Query 018591
Match_columns 353
No_of_seqs 813 out of 1312
Neff 12.2
Searched_HMMs 29240
Date Mon Mar 25 03:00:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 3.4E-51 1.2E-55 343.9 37.3 281 8-337 100-410 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 1.5E-50 5.2E-55 331.9 39.5 287 6-335 45-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 5.8E-50 2E-54 325.3 36.9 284 5-337 21-320 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 3.2E-49 1.1E-53 325.4 39.0 289 6-335 54-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 6.8E-50 2.3E-54 333.0 33.1 304 4-341 54-378 (380)
6 2ynn_A Coatomer subunit beta'; 100.0 2.2E-48 7.6E-53 314.1 39.7 285 6-339 3-303 (304)
7 2hes_X YDR267CP; beta-propelle 100.0 5.8E-48 2E-52 315.2 38.0 303 4-339 2-329 (330)
8 4ery_A WD repeat-containing pr 100.0 2.8E-47 9.6E-52 309.3 40.0 285 5-337 12-311 (312)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-47 8.8E-52 313.3 37.8 304 5-346 4-343 (345)
10 3frx_A Guanine nucleotide-bind 100.0 2.4E-47 8.4E-52 310.0 36.6 286 5-339 6-318 (319)
11 4g56_B MGC81050 protein; prote 100.0 1.3E-47 4.3E-52 316.2 33.4 287 10-342 36-347 (357)
12 4gqb_B Methylosome protein 50; 100.0 2.5E-47 8.4E-52 311.9 33.6 283 13-341 27-334 (344)
13 2xzm_R RACK1; ribosome, transl 100.0 3.5E-46 1.2E-50 306.5 36.3 286 6-339 11-341 (343)
14 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.4E-45 8.1E-50 312.5 39.4 290 6-345 108-398 (445)
15 4aow_A Guanine nucleotide-bind 100.0 4.5E-45 1.5E-49 300.1 37.6 289 5-340 27-339 (340)
16 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-45 3.9E-50 313.4 33.5 287 10-346 127-422 (435)
17 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-44 5.3E-49 307.5 40.4 289 3-339 146-443 (445)
18 1erj_A Transcriptional repress 100.0 1.5E-44 5E-49 302.2 38.0 283 14-339 62-390 (393)
19 1nr0_A Actin interacting prote 100.0 4.7E-44 1.6E-48 315.4 43.1 322 4-341 178-570 (611)
20 1nr0_A Actin interacting prote 100.0 1.2E-44 4.3E-49 319.1 37.3 292 4-343 47-360 (611)
21 1sq9_A Antiviral protein SKI8; 100.0 8.2E-45 2.8E-49 304.9 33.1 296 1-340 1-397 (397)
22 3odt_A Protein DOA1; ubiquitin 100.0 8.6E-44 2.9E-48 289.1 37.9 293 3-347 5-305 (313)
23 3v7d_B Cell division control p 100.0 1.2E-43 4E-48 303.8 40.6 287 7-344 112-427 (464)
24 3dm0_A Maltose-binding peripla 100.0 1.6E-42 5.4E-47 310.5 39.2 284 7-338 373-693 (694)
25 2ymu_A WD-40 repeat protein; u 100.0 1.5E-42 5.2E-47 304.9 38.3 276 5-335 292-577 (577)
26 2ynn_A Coatomer subunit beta'; 100.0 6.6E-43 2.3E-47 282.1 33.0 253 47-346 4-267 (304)
27 3zwl_B Eukaryotic translation 100.0 3.2E-42 1.1E-46 286.2 36.6 287 7-343 23-351 (369)
28 3ei3_B DNA damage-binding prot 100.0 8.9E-43 3.1E-47 291.0 33.0 291 4-338 61-382 (383)
29 2ymu_A WD-40 repeat protein; u 100.0 2.5E-41 8.6E-46 297.2 39.2 284 5-344 251-544 (577)
30 4e54_B DNA damage-binding prot 100.0 6.4E-43 2.2E-47 296.3 28.0 296 4-341 107-433 (435)
31 1k8k_C P40, ARP2/3 complex 41 100.0 5.1E-42 1.7E-46 285.4 32.9 293 11-342 3-365 (372)
32 1vyh_C Platelet-activating fac 100.0 3.7E-42 1.3E-46 289.1 32.3 249 49-346 101-377 (410)
33 3ow8_A WD repeat-containing pr 100.0 7.6E-42 2.6E-46 277.6 32.3 254 46-346 22-287 (321)
34 4aez_A CDC20, WD repeat-contai 100.0 4.2E-41 1.4E-45 282.3 37.2 287 11-345 86-387 (401)
35 3k26_A Polycomb protein EED; W 100.0 1.2E-41 4.1E-46 282.5 32.2 289 11-338 13-366 (366)
36 4a11_B DNA excision repair pro 100.0 2E-41 6.7E-46 285.3 33.2 302 4-346 31-373 (408)
37 3i2n_A WD repeat-containing pr 100.0 1.1E-41 3.9E-46 281.7 31.1 290 10-341 12-356 (357)
38 1r5m_A SIR4-interacting protei 100.0 1.8E-41 6.2E-46 287.0 32.6 277 13-340 42-363 (425)
39 1gxr_A ESG1, transducin-like e 100.0 1.4E-40 4.9E-45 272.9 37.0 277 10-337 45-336 (337)
40 4gga_A P55CDC, cell division c 100.0 2.2E-40 7.5E-45 279.6 37.8 281 18-345 107-402 (420)
41 3gre_A Serine/threonine-protei 100.0 2.7E-41 9.1E-46 287.0 30.8 301 4-335 50-437 (437)
42 1r5m_A SIR4-interacting protei 100.0 7.8E-41 2.7E-45 283.1 33.1 290 15-337 107-424 (425)
43 4gqb_B Methylosome protein 50; 100.0 1.2E-40 4E-45 272.4 32.4 236 13-291 79-333 (344)
44 4h5i_A Guanine nucleotide-exch 100.0 4.6E-40 1.6E-44 271.8 36.2 288 17-340 15-345 (365)
45 4ggc_A P55CDC, cell division c 100.0 9E-40 3.1E-44 266.0 37.0 277 19-340 28-317 (318)
46 2j04_B YDR362CP, TAU91; beta p 100.0 2.5E-41 8.6E-46 289.5 27.1 301 7-339 125-518 (524)
47 2pm9_A Protein WEB1, protein t 100.0 1.5E-41 5.3E-46 286.7 25.5 290 14-339 65-415 (416)
48 3vl1_A 26S proteasome regulato 100.0 9.7E-40 3.3E-44 276.1 35.9 288 5-338 87-419 (420)
49 1got_B GT-beta; complex (GTP-b 100.0 1.1E-39 3.8E-44 267.5 34.9 254 46-346 45-309 (340)
50 1pgu_A Actin interacting prote 100.0 1.2E-39 4.2E-44 288.6 37.7 318 3-338 190-614 (615)
51 3dwl_C Actin-related protein 2 100.0 1.5E-41 5.2E-46 283.0 23.9 295 10-336 5-377 (377)
52 3v7d_B Cell division control p 100.0 6E-39 2.1E-43 274.6 39.9 304 3-335 149-460 (464)
53 1yfq_A Cell cycle arrest prote 100.0 6.6E-40 2.2E-44 269.5 32.1 281 9-336 4-322 (342)
54 2pm7_B Protein transport prote 100.0 1.4E-39 4.7E-44 261.8 33.1 252 9-292 2-288 (297)
55 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-39 9.7E-44 295.1 38.8 287 7-342 4-306 (814)
56 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-39 6.5E-44 308.5 38.9 294 8-345 607-1041(1249)
57 2pm7_B Protein transport prote 100.0 2E-39 6.8E-44 260.8 32.9 253 49-339 2-286 (297)
58 2pm9_A Protein WEB1, protein t 100.0 1.2E-40 3.9E-45 281.4 26.4 286 15-344 11-343 (416)
59 4g56_B MGC81050 protein; prote 100.0 1.1E-40 3.9E-45 274.7 24.8 276 26-347 16-310 (357)
60 3mmy_A MRNA export factor; mRN 100.0 1.4E-39 4.7E-44 270.2 30.8 290 4-339 27-347 (368)
61 3frx_A Guanine nucleotide-bind 100.0 6.5E-39 2.2E-43 260.4 33.7 244 6-290 55-318 (319)
62 3vl1_A 26S proteasome regulato 100.0 2.5E-40 8.6E-45 279.6 26.1 276 18-341 58-368 (420)
63 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-39 6.3E-44 275.3 31.3 252 3-291 160-416 (435)
64 3bg1_A Protein SEC13 homolog; 100.0 4.3E-40 1.5E-44 267.0 26.2 257 10-299 7-303 (316)
65 2hes_X YDR267CP; beta-propelle 100.0 7E-39 2.4E-43 261.5 33.3 259 44-339 2-281 (330)
66 3dw8_B Serine/threonine-protei 100.0 1.2E-38 4.2E-43 271.5 34.2 308 15-337 27-445 (447)
67 3f3f_A Nucleoporin SEH1; struc 100.0 4E-39 1.4E-43 265.5 29.5 298 9-344 4-343 (351)
68 1gxr_A ESG1, transducin-like e 100.0 1.2E-38 4E-43 261.5 31.7 284 15-345 8-303 (337)
69 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-38 8.9E-43 259.7 33.4 258 45-340 4-285 (345)
70 1pgu_A Actin interacting prote 100.0 2E-37 7E-42 274.4 39.2 293 5-345 149-580 (615)
71 3iz6_a 40S ribosomal protein R 100.0 2.2E-39 7.6E-44 269.6 24.6 264 36-344 46-335 (380)
72 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-37 5.4E-42 295.3 39.8 330 3-346 644-1124(1249)
73 1erj_A Transcriptional repress 100.0 1.4E-37 4.8E-42 259.9 33.3 234 18-289 125-389 (393)
74 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-37 4.4E-42 283.9 35.4 197 11-247 12-244 (902)
75 4ery_A WD repeat-containing pr 100.0 6.5E-37 2.2E-41 248.3 35.7 253 46-346 13-276 (312)
76 2pbi_B Guanine nucleotide-bind 100.0 2.1E-37 7.3E-42 255.0 33.2 252 47-345 55-322 (354)
77 3bg1_A Protein SEC13 homolog; 100.0 2.2E-38 7.6E-43 257.0 26.8 251 51-339 8-294 (316)
78 2oaj_A Protein SNI1; WD40 repe 100.0 3E-37 1E-41 281.5 36.2 331 10-344 145-670 (902)
79 2xzm_R RACK1; ribosome, transl 100.0 5.5E-37 1.9E-41 251.8 33.3 247 6-290 66-341 (343)
80 3jrp_A Fusion protein of prote 100.0 1.3E-36 4.6E-41 253.3 35.5 253 6-290 1-288 (379)
81 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-36 4.4E-41 250.5 32.8 290 4-342 7-340 (355)
82 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-37 6E-42 260.6 27.3 284 18-340 36-344 (402)
83 3jrp_A Fusion protein of prote 100.0 7.1E-37 2.4E-41 254.9 30.3 256 46-339 1-288 (379)
84 4aez_A CDC20, WD repeat-contai 100.0 7.6E-36 2.6E-40 250.4 34.9 250 3-292 120-383 (401)
85 4gga_A P55CDC, cell division c 100.0 1.5E-35 5E-40 250.1 35.0 247 3-291 132-397 (420)
86 3gre_A Serine/threonine-protei 100.0 1.3E-36 4.4E-41 258.2 26.4 264 40-346 47-367 (437)
87 3k26_A Polycomb protein EED; W 100.0 1.9E-36 6.6E-41 251.1 26.7 254 5-288 53-365 (366)
88 3mkq_A Coatomer beta'-subunit; 100.0 5.5E-35 1.9E-39 266.8 37.2 290 3-339 42-387 (814)
89 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-34 3.8E-39 235.3 33.3 247 45-346 7-263 (313)
90 4aow_A Guanine nucleotide-bind 100.0 6.9E-35 2.4E-39 239.4 32.2 257 43-344 25-292 (340)
91 3dm0_A Maltose-binding peripla 100.0 4.1E-35 1.4E-39 262.6 31.0 254 48-344 374-638 (694)
92 1sq9_A Antiviral protein SKI8; 100.0 3.3E-35 1.1E-39 246.5 28.0 260 48-346 8-330 (397)
93 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-35 3.7E-40 254.8 24.6 228 68-339 175-429 (524)
94 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.2E-34 2.5E-38 241.9 35.2 280 17-339 5-392 (450)
95 2w18_A PALB2, fancn, partner a 100.0 2E-34 6.7E-39 227.1 28.4 291 5-336 24-355 (356)
96 3jro_A Fusion protein of prote 100.0 2.9E-35 1E-39 264.9 27.1 250 9-290 2-286 (753)
97 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-34 7.6E-39 239.3 30.3 249 8-291 44-363 (372)
98 3ei3_B DNA damage-binding prot 100.0 1.2E-34 4.2E-39 241.8 28.6 259 40-346 57-347 (383)
99 3dwl_C Actin-related protein 2 100.0 4.2E-35 1.4E-39 244.1 24.2 247 52-337 7-280 (377)
100 4ggc_A P55CDC, cell division c 100.0 3.8E-33 1.3E-37 226.8 35.1 246 3-290 52-316 (318)
101 3zwl_B Eukaryotic translation 100.0 7.7E-33 2.6E-37 229.7 36.3 256 3-291 61-348 (369)
102 3jro_A Fusion protein of prote 100.0 2.2E-34 7.7E-39 259.2 28.2 254 49-340 2-287 (753)
103 3lrv_A PRE-mRNA-splicing facto 100.0 3.2E-34 1.1E-38 235.4 26.6 269 25-337 47-332 (343)
104 4gq1_A NUP37; propeller, trans 100.0 1.9E-34 6.6E-39 240.8 24.4 232 66-337 101-388 (393)
105 3mmy_A MRNA export factor; mRN 100.0 1.3E-33 4.4E-38 234.3 28.7 264 39-346 22-312 (368)
106 1yfq_A Cell cycle arrest prote 100.0 9.1E-34 3.1E-38 232.9 26.8 249 50-346 5-290 (342)
107 2j04_A TAU60, YPL007P, hypothe 100.0 3.2E-34 1.1E-38 240.3 24.0 264 14-337 13-296 (588)
108 2xyi_A Probable histone-bindin 100.0 2E-33 7E-38 237.6 29.0 258 50-339 122-411 (430)
109 2xyi_A Probable histone-bindin 100.0 2.8E-33 9.6E-38 236.7 29.0 251 10-290 122-411 (430)
110 3i2n_A WD repeat-containing pr 100.0 5.8E-33 2E-37 229.4 27.8 249 50-342 12-295 (357)
111 4e54_B DNA damage-binding prot 100.0 2.2E-33 7.5E-38 237.8 25.7 242 7-291 155-432 (435)
112 3dw8_B Serine/threonine-protei 100.0 2.7E-33 9.3E-38 238.5 25.8 253 55-342 27-377 (447)
113 2aq5_A Coronin-1A; WD40 repeat 100.0 6.6E-33 2.3E-37 232.7 27.0 246 8-291 73-344 (402)
114 4a11_B DNA excision repair pro 100.0 3.2E-32 1.1E-36 229.0 31.2 278 14-338 97-405 (408)
115 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-33 4.4E-38 236.6 20.2 259 6-327 74-350 (588)
116 3vu4_A KMHSV2; beta-propeller 100.0 6.8E-32 2.3E-36 222.3 29.9 246 40-340 3-273 (355)
117 3lrv_A PRE-mRNA-splicing facto 100.0 7.7E-33 2.6E-37 227.2 22.0 230 65-342 47-296 (343)
118 3bws_A Protein LP49; two-domai 100.0 7.2E-31 2.5E-35 222.6 34.7 278 7-338 114-432 (433)
119 1l0q_A Surface layer protein; 100.0 2.4E-30 8.2E-35 216.5 36.3 264 27-345 3-282 (391)
120 4h5i_A Guanine nucleotide-exch 100.0 3.4E-31 1.2E-35 218.8 29.5 239 11-289 68-343 (365)
121 1l0q_A Surface layer protein; 100.0 6E-29 2E-33 208.0 36.2 288 3-341 19-345 (391)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.8E-30 2.3E-34 217.5 27.9 204 126-339 100-342 (450)
123 4gq1_A NUP37; propeller, trans 100.0 1.8E-30 6.1E-35 216.8 23.3 220 26-288 101-388 (393)
124 3f3f_A Nucleoporin SEH1; struc 100.0 1.8E-29 6.2E-34 207.7 27.9 266 7-302 48-350 (351)
125 2w18_A PALB2, fancn, partner a 100.0 3.7E-29 1.3E-33 197.2 24.9 175 35-243 156-355 (356)
126 3bws_A Protein LP49; two-domai 100.0 3.9E-27 1.3E-31 199.7 31.1 262 37-346 102-398 (433)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.1E-27 1.7E-31 197.0 28.4 269 17-340 63-389 (415)
128 1nir_A Nitrite reductase; hemo 100.0 2.6E-26 8.7E-31 198.4 30.1 275 25-342 148-462 (543)
129 1nir_A Nitrite reductase; hemo 100.0 1.3E-25 4.4E-30 194.0 32.5 310 3-348 166-524 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.8E-26 2.3E-30 190.2 26.8 260 4-314 103-408 (415)
131 3u4y_A Uncharacterized protein 99.9 5.9E-23 2E-27 167.7 31.6 275 26-341 10-307 (331)
132 1ri6_A Putative isomerase YBHE 99.9 2.6E-23 8.8E-28 170.6 29.1 269 28-337 7-307 (343)
133 1pby_B Quinohemoprotein amine 99.9 4.2E-23 1.4E-27 168.9 26.1 270 27-346 2-318 (337)
134 2ecf_A Dipeptidyl peptidase IV 99.9 5.4E-23 1.8E-27 185.9 27.8 274 16-338 36-413 (741)
135 3vgz_A Uncharacterized protein 99.9 7.7E-22 2.6E-26 162.5 31.0 273 15-329 39-335 (353)
136 3hfq_A Uncharacterized protein 99.9 5.9E-21 2E-25 156.9 32.0 269 35-341 15-322 (347)
137 2ojh_A Uncharacterized protein 99.9 1.8E-22 6.1E-27 162.0 22.5 250 31-329 17-293 (297)
138 1k32_A Tricorn protease; prote 99.9 4.7E-21 1.6E-25 179.0 33.1 309 8-340 44-463 (1045)
139 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-21 3.6E-26 177.4 25.2 286 18-339 110-460 (741)
140 2z3z_A Dipeptidyl aminopeptida 99.9 1.6E-21 5.5E-26 175.3 26.1 287 17-340 82-437 (706)
141 2z3z_A Dipeptidyl aminopeptida 99.9 7.3E-22 2.5E-26 177.5 22.4 272 19-340 28-393 (706)
142 1k32_A Tricorn protease; prote 99.9 2.5E-21 8.6E-26 180.8 26.7 285 9-338 196-502 (1045)
143 1xfd_A DIP, dipeptidyl aminope 99.9 2.8E-22 9.5E-27 180.8 19.6 281 18-339 18-394 (723)
144 3o4h_A Acylamino-acid-releasin 99.9 8.6E-22 2.9E-26 173.0 21.5 274 6-338 10-315 (582)
145 2oit_A Nucleoporin 214KDA; NH2 99.9 1.8E-20 6E-25 157.8 27.6 203 16-246 36-279 (434)
146 3u4y_A Uncharacterized protein 99.9 1.1E-19 3.7E-24 148.3 29.9 250 3-290 27-305 (331)
147 1ri6_A Putative isomerase YBHE 99.9 1.7E-19 5.8E-24 147.8 30.2 268 14-314 35-333 (343)
148 2oit_A Nucleoporin 214KDA; NH2 99.9 3.5E-20 1.2E-24 156.0 26.3 223 36-290 23-279 (434)
149 1jmx_B Amine dehydrogenase; ox 99.9 3.5E-20 1.2E-24 152.3 25.0 266 26-346 11-333 (349)
150 1xfd_A DIP, dipeptidyl aminope 99.9 3.6E-20 1.2E-24 167.0 25.9 286 3-325 44-427 (723)
151 2ojh_A Uncharacterized protein 99.9 4.3E-20 1.5E-24 148.1 22.1 219 71-341 17-261 (297)
152 3scy_A Hypothetical bacterial 99.9 2E-18 7E-23 142.5 32.5 281 27-341 14-342 (361)
153 3pe7_A Oligogalacturonate lyas 99.9 3.1E-19 1.1E-23 148.9 27.4 289 3-339 17-383 (388)
154 3vgz_A Uncharacterized protein 99.9 4.2E-19 1.4E-23 146.1 26.7 241 57-345 41-310 (353)
155 3scy_A Hypothetical bacterial 99.9 4.2E-18 1.4E-22 140.6 31.7 276 15-312 48-360 (361)
156 1pby_B Quinohemoprotein amine 99.8 1.1E-18 3.9E-23 142.5 23.9 242 3-293 18-314 (337)
157 3hfq_A Uncharacterized protein 99.8 2.4E-17 8.1E-22 135.4 30.8 256 13-291 36-321 (347)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.9E-18 2E-22 139.8 25.4 271 28-339 4-342 (365)
159 3o4h_A Acylamino-acid-releasin 99.8 1.1E-18 3.8E-23 153.3 19.8 226 56-336 21-274 (582)
160 1z68_A Fibroblast activation p 99.8 7.7E-19 2.6E-23 158.2 18.0 273 21-338 20-391 (719)
161 1z68_A Fibroblast activation p 99.8 3E-18 1E-22 154.4 21.3 297 3-342 43-447 (719)
162 3c5m_A Oligogalacturonate lyas 99.8 7.4E-18 2.5E-22 140.9 20.9 304 2-337 16-381 (396)
163 2oiz_A Aromatic amine dehydrog 99.8 4.2E-17 1.4E-21 134.1 24.9 270 34-345 29-343 (361)
164 3fvz_A Peptidyl-glycine alpha- 99.8 7.3E-16 2.5E-20 125.3 28.1 264 16-339 23-323 (329)
165 3dsm_A Uncharacterized protein 99.8 5.4E-16 1.8E-20 125.9 26.8 264 34-346 15-309 (328)
166 3azo_A Aminopeptidase; POP fam 99.8 2.7E-16 9.2E-21 140.4 25.6 288 9-341 16-372 (662)
167 2oiz_A Aromatic amine dehydrog 99.8 1E-15 3.5E-20 125.8 26.4 264 3-314 38-358 (361)
168 1q7f_A NHL, brain tumor CG1071 99.8 4.2E-15 1.4E-19 118.5 28.2 238 55-341 28-283 (286)
169 1jmx_B Amine dehydrogenase; ox 99.8 6.1E-16 2.1E-20 126.9 23.7 248 3-292 28-328 (349)
170 1q7f_A NHL, brain tumor CG1071 99.7 1.5E-14 5.3E-19 115.2 30.5 232 14-290 27-281 (286)
171 2dg1_A DRP35, lactonase; beta 99.7 5.4E-15 1.8E-19 120.6 27.1 264 17-328 6-300 (333)
172 1jof_A Carboxy-CIS,CIS-muconat 99.7 8.6E-15 2.9E-19 120.9 27.3 247 15-290 38-342 (365)
173 3fvz_A Peptidyl-glycine alpha- 99.7 2E-14 6.9E-19 116.8 27.6 226 34-289 67-322 (329)
174 4a5s_A Dipeptidyl peptidase 4 99.7 2.3E-15 7.8E-20 135.8 22.7 275 16-337 16-397 (740)
175 3azo_A Aminopeptidase; POP fam 99.7 2.2E-14 7.7E-19 128.0 27.6 277 9-337 60-410 (662)
176 2z2n_A Virginiamycin B lyase; 99.7 4.5E-12 1.5E-16 101.5 38.0 275 11-339 9-296 (299)
177 3pe7_A Oligogalacturonate lyas 99.7 3.4E-15 1.2E-19 124.5 19.4 255 39-341 13-332 (388)
178 1qks_A Cytochrome CD1 nitrite 99.7 4.3E-13 1.5E-17 115.9 32.2 271 26-339 167-478 (567)
179 3q7m_A Lipoprotein YFGL, BAMB; 99.7 2.2E-13 7.5E-18 112.9 29.3 284 3-335 70-375 (376)
180 2gop_A Trilobed protease; beta 99.7 1.2E-13 4.3E-18 113.1 27.6 252 17-337 15-330 (347)
181 3dsm_A Uncharacterized protein 99.7 2.7E-13 9.3E-18 110.0 28.5 238 17-292 44-304 (328)
182 3q7m_A Lipoprotein YFGL, BAMB; 99.7 3.2E-13 1.1E-17 111.9 29.2 272 22-346 49-345 (376)
183 4a5s_A Dipeptidyl peptidase 4 99.7 2.4E-14 8.1E-19 129.2 23.8 306 3-342 43-453 (740)
184 3e5z_A Putative gluconolactona 99.7 3.1E-13 1.1E-17 108.1 27.4 239 46-340 17-288 (296)
185 1rwi_B Serine/threonine-protei 99.7 1.9E-13 6.6E-18 107.8 25.1 236 58-342 25-268 (270)
186 2mad_H Methylamine dehydrogena 99.6 7E-12 2.4E-16 103.1 32.1 281 25-344 31-356 (373)
187 3no2_A Uncharacterized protein 99.6 2.3E-13 7.8E-18 107.3 21.8 210 66-325 5-230 (276)
188 1qks_A Cytochrome CD1 nitrite 99.6 1.2E-11 4.2E-16 106.8 34.3 309 3-347 184-547 (567)
189 2bkl_A Prolyl endopeptidase; m 99.6 6.6E-13 2.3E-17 119.0 27.2 271 22-341 75-400 (695)
190 3e5z_A Putative gluconolactona 99.6 1.9E-12 6.6E-17 103.5 27.1 242 5-290 16-287 (296)
191 2qc5_A Streptogramin B lactona 99.6 9.2E-11 3.2E-15 93.8 36.1 269 14-336 17-298 (300)
192 1rwi_B Serine/threonine-protei 99.6 1.4E-12 4.8E-17 102.8 25.0 231 18-291 25-266 (270)
193 2dg1_A DRP35, lactonase; beta 99.6 5.9E-12 2E-16 102.5 29.3 207 6-245 34-263 (333)
194 3no2_A Uncharacterized protein 99.6 2.3E-13 7.8E-18 107.3 19.8 191 139-346 6-203 (276)
195 2xdw_A Prolyl endopeptidase; a 99.6 3.6E-12 1.2E-16 114.5 29.6 242 14-291 122-416 (710)
196 2xdw_A Prolyl endopeptidase; a 99.6 9.2E-12 3.2E-16 111.9 31.4 268 24-340 81-416 (710)
197 2gop_A Trilobed protease; beta 99.6 1.2E-12 4.2E-17 107.2 23.5 182 130-340 60-293 (347)
198 2bkl_A Prolyl endopeptidase; m 99.6 4.8E-13 1.6E-17 119.9 21.8 241 14-291 118-399 (695)
199 3sjl_D Methylamine dehydrogena 99.6 5.3E-12 1.8E-16 102.6 25.4 283 25-347 43-372 (386)
200 3c5m_A Oligogalacturonate lyas 99.5 1.8E-13 6E-18 114.3 16.2 249 39-341 13-332 (396)
201 1xip_A Nucleoporin NUP159; bet 99.5 7.4E-13 2.5E-17 108.0 17.6 170 18-231 39-230 (388)
202 3c75_H MADH, methylamine dehyd 99.5 9.8E-12 3.4E-16 102.9 24.4 283 25-345 83-409 (426)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.2E-10 4.2E-15 93.8 29.5 239 58-340 19-301 (314)
204 1kb0_A Quinohemoprotein alcoho 99.5 7.3E-11 2.5E-15 104.8 30.0 320 3-338 94-567 (677)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.2E-10 4.2E-15 93.8 28.7 244 11-290 12-300 (314)
206 2z2n_A Virginiamycin B lyase; 99.5 6E-10 2E-14 89.0 31.9 233 54-337 12-254 (299)
207 1yiq_A Quinohemoprotein alcoho 99.5 1.9E-11 6.5E-16 108.7 25.0 283 25-346 69-513 (689)
208 1kb0_A Quinohemoprotein alcoho 99.5 1.7E-11 5.7E-16 108.9 24.2 281 25-346 76-515 (677)
209 3hxj_A Pyrrolo-quinoline quino 99.5 4.2E-12 1.4E-16 103.2 18.2 308 5-340 8-326 (330)
210 1yr2_A Prolyl oligopeptidase; 99.5 6.3E-11 2.2E-15 106.9 27.2 271 23-340 115-443 (741)
211 3hxj_A Pyrrolo-quinoline quino 99.5 2.2E-12 7.5E-17 104.9 15.4 181 136-342 105-287 (330)
212 1yiq_A Quinohemoprotein alcoho 99.5 2.3E-10 7.8E-15 101.8 29.3 303 3-314 87-528 (689)
213 1xip_A Nucleoporin NUP159; bet 99.5 9E-12 3.1E-16 101.6 18.6 171 130-324 39-230 (388)
214 3hrp_A Uncharacterized protein 99.4 4.4E-10 1.5E-14 93.7 28.7 231 58-337 132-409 (409)
215 3g4e_A Regucalcin; six bladed 99.4 1.2E-09 4E-14 87.3 29.7 220 58-325 14-259 (297)
216 3hrp_A Uncharacterized protein 99.4 2.1E-09 7.2E-14 89.7 30.8 232 17-287 131-408 (409)
217 1yr2_A Prolyl oligopeptidase; 99.4 1.5E-10 5.1E-15 104.5 25.1 241 14-291 160-443 (741)
218 3sjl_D Methylamine dehydrogena 99.4 3.3E-10 1.1E-14 92.1 24.0 267 3-314 66-384 (386)
219 2mad_H Methylamine dehydrogena 99.4 6.3E-09 2.2E-13 85.6 31.4 245 3-292 54-353 (373)
220 2qc5_A Streptogramin B lactona 99.4 1.2E-08 4.1E-13 81.5 31.7 232 55-337 18-259 (300)
221 3g4e_A Regucalcin; six bladed 99.3 7.9E-09 2.7E-13 82.5 28.1 220 12-269 8-249 (297)
222 3dr2_A Exported gluconolactona 99.3 4.4E-09 1.5E-13 84.3 25.8 228 49-330 37-299 (305)
223 2hz6_A Endoplasmic reticulum t 99.3 1.3E-12 4.4E-17 107.6 5.1 189 23-252 6-199 (369)
224 2hz6_A Endoplasmic reticulum t 99.3 4.4E-13 1.5E-17 110.4 2.2 190 137-346 8-200 (369)
225 2ghs_A AGR_C_1268P; regucalcin 99.3 1.4E-08 4.7E-13 82.2 28.6 217 60-328 52-293 (326)
226 1kv9_A Type II quinohemoprotei 99.3 1.9E-09 6.6E-14 95.6 24.5 282 25-346 65-496 (668)
227 3iuj_A Prolyl endopeptidase; h 99.2 1.5E-08 5.2E-13 90.7 28.4 239 14-291 126-407 (693)
228 2qe8_A Uncharacterized protein 99.2 2E-09 7E-14 87.8 20.9 262 17-331 17-314 (343)
229 1mda_H Methylamine dehydrogena 99.2 1.5E-09 5E-14 88.5 19.8 274 26-346 32-354 (368)
230 1kv9_A Type II quinohemoprotei 99.2 5.7E-08 2E-12 86.3 30.1 285 3-296 83-495 (668)
231 4a2l_A BT_4663, two-component 99.2 2.3E-07 7.7E-12 84.6 33.9 286 16-340 214-528 (795)
232 3c75_H MADH, methylamine dehyd 99.2 1.9E-08 6.4E-13 83.4 24.0 250 3-293 106-406 (426)
233 2ad6_A Methanol dehydrogenase 99.2 3.6E-08 1.2E-12 85.7 27.0 281 25-346 61-502 (571)
234 3dr2_A Exported gluconolactona 99.2 4.1E-08 1.4E-12 78.6 25.3 229 8-281 36-299 (305)
235 4a2l_A BT_4663, two-component 99.2 3.8E-07 1.3E-11 83.1 33.8 288 19-340 175-482 (795)
236 2ghs_A AGR_C_1268P; regucalcin 99.2 1.2E-07 4.1E-12 76.7 26.9 211 19-269 51-279 (326)
237 1flg_A Protein (quinoprotein e 99.2 8.2E-08 2.8E-12 83.6 27.3 279 3-296 85-523 (582)
238 2ad6_A Methanol dehydrogenase 99.1 3.5E-07 1.2E-11 79.6 30.6 264 22-296 111-501 (571)
239 3nok_A Glutaminyl cyclase; bet 99.1 6.6E-08 2.3E-12 73.6 22.5 187 7-233 44-253 (268)
240 1w6s_A Methanol dehydrogenase 99.1 4.7E-07 1.6E-11 78.8 30.8 288 4-296 82-510 (599)
241 3mbr_X Glutamine cyclotransfer 99.1 1.4E-07 4.8E-12 71.2 24.0 191 5-234 8-223 (243)
242 3nol_A Glutamine cyclotransfer 99.1 8.2E-08 2.8E-12 73.1 22.3 190 6-234 31-244 (262)
243 1w6s_A Methanol dehydrogenase 99.1 1.4E-07 4.9E-12 82.0 27.0 281 25-346 61-511 (599)
244 3v9f_A Two-component system se 99.1 8.4E-07 2.9E-11 80.7 32.8 289 16-340 257-570 (781)
245 3iuj_A Prolyl endopeptidase; h 99.1 5.5E-08 1.9E-12 87.1 24.0 237 55-340 127-407 (693)
246 2iwa_A Glutamine cyclotransfer 99.0 5.9E-07 2E-11 69.2 25.0 204 5-246 8-238 (266)
247 2iwa_A Glutamine cyclotransfer 99.0 6.6E-07 2.2E-11 69.0 25.2 200 130-340 22-239 (266)
248 3v9f_A Two-component system se 99.0 4.7E-06 1.6E-10 75.9 34.8 289 17-340 163-480 (781)
249 3nol_A Glutamine cyclotransfer 99.0 3.6E-07 1.2E-11 69.6 22.6 185 131-328 45-245 (262)
250 1mda_H Methylamine dehydrogena 99.0 5E-08 1.7E-12 79.5 19.0 257 3-313 53-366 (368)
251 1flg_A Protein (quinoprotein e 99.0 6.4E-07 2.2E-11 78.1 26.3 64 25-88 67-139 (582)
252 1npe_A Nidogen, entactin; glyc 99.0 4.2E-06 1.4E-10 65.5 31.0 242 26-314 1-261 (267)
253 2qe8_A Uncharacterized protein 99.0 3.7E-08 1.3E-12 80.3 17.0 190 126-340 64-280 (343)
254 2ece_A 462AA long hypothetical 99.0 7.9E-07 2.7E-11 73.2 24.1 170 148-326 164-399 (462)
255 3mbr_X Glutamine cyclotransfer 98.9 2.5E-06 8.5E-11 64.4 23.6 186 129-327 21-223 (243)
256 3nok_A Glutaminyl cyclase; bet 98.9 1E-06 3.5E-11 67.1 21.5 182 131-325 57-253 (268)
257 1k3i_A Galactose oxidase precu 98.9 6.5E-06 2.2E-10 73.3 29.2 263 25-327 197-530 (656)
258 1npe_A Nidogen, entactin; glyc 98.9 6.4E-06 2.2E-10 64.4 26.0 200 130-346 37-246 (267)
259 1fwx_A Nitrous oxide reductase 98.8 2.2E-06 7.7E-11 73.1 22.7 142 189-340 255-433 (595)
260 2fp8_A Strictosidine synthase; 98.8 9.6E-06 3.3E-10 65.4 25.7 253 59-339 21-314 (322)
261 2ece_A 462AA long hypothetical 98.8 1.2E-06 4E-11 72.2 19.9 187 139-339 97-353 (462)
262 3v65_B Low-density lipoprotein 98.5 0.00026 8.7E-09 58.5 28.3 233 19-295 79-324 (386)
263 2fp8_A Strictosidine synthase; 98.5 0.00021 7.2E-09 57.5 25.9 241 12-289 14-313 (322)
264 1fwx_A Nitrous oxide reductase 98.5 3.7E-05 1.3E-09 65.7 20.9 187 139-338 102-361 (595)
265 3v65_B Low-density lipoprotein 98.5 0.00035 1.2E-08 57.7 28.1 199 129-343 116-323 (386)
266 2xbg_A YCF48-like protein; pho 98.5 0.00031 1E-08 56.6 35.2 272 16-335 35-319 (327)
267 3v64_C Agrin; beta propeller, 98.5 0.00035 1.2E-08 56.8 30.0 234 17-293 34-279 (349)
268 2vpj_A Kelch-like protein 12; 98.4 0.00036 1.2E-08 55.5 24.3 232 24-290 13-279 (301)
269 2vpj_A Kelch-like protein 12; 98.4 0.00041 1.4E-08 55.2 24.7 189 137-340 62-280 (301)
270 3v64_C Agrin; beta propeller, 98.4 0.00052 1.8E-08 55.8 29.1 199 129-343 73-280 (349)
271 1ijq_A LDL receptor, low-densi 98.4 0.00057 2E-08 54.7 30.0 201 129-343 30-243 (316)
272 2xn4_A Kelch-like protein 2; s 98.3 0.00065 2.2E-08 54.0 24.0 189 137-340 61-278 (302)
273 3p5b_L Low density lipoprotein 98.3 0.00089 3E-08 55.6 30.5 227 27-293 84-324 (400)
274 2xn4_A Kelch-like protein 2; s 98.3 0.00064 2.2E-08 54.0 22.9 229 24-290 14-277 (302)
275 1k3i_A Galactose oxidase precu 98.3 0.0002 6.9E-09 63.7 21.6 234 21-278 247-530 (656)
276 3ii7_A Kelch-like protein 7; p 98.3 0.0009 3.1E-08 53.3 24.5 189 136-339 54-273 (306)
277 3p5b_L Low density lipoprotein 98.2 0.0015 5E-08 54.3 29.7 204 127-344 110-326 (400)
278 2xzh_A Clathrin heavy chain 1; 98.2 0.001 3.4E-08 52.3 25.7 185 146-345 85-297 (365)
279 3ii7_A Kelch-like protein 7; p 98.2 0.0012 4E-08 52.6 25.3 227 26-290 12-273 (306)
280 2p4o_A Hypothetical protein; p 98.2 0.0013 4.5E-08 52.4 28.9 237 45-327 21-277 (306)
281 3ei3_A DNA damage-binding prot 98.2 0.0048 1.7E-07 58.3 34.4 70 16-85 553-636 (1158)
282 3qqz_A Putative uncharacterize 98.2 0.0011 3.9E-08 50.7 22.0 202 126-335 24-250 (255)
283 3tc9_A Hypothetical hydrolase; 98.2 0.0023 7.8E-08 53.7 24.7 196 129-337 179-429 (430)
284 1zgk_A Kelch-like ECH-associat 98.2 0.0017 5.7E-08 51.8 22.6 187 139-340 72-289 (308)
285 1zgk_A Kelch-like ECH-associat 98.1 0.0018 6.1E-08 51.6 23.2 231 22-290 21-288 (308)
286 3amr_A 3-phytase; beta-propell 98.1 0.002 7E-08 51.4 24.3 186 139-337 41-262 (355)
287 2uvk_A YJHT; unknown function, 98.1 0.0022 7.4E-08 52.4 22.7 140 148-293 168-346 (357)
288 1bpo_A Protein (clathrin); cla 98.1 0.0028 9.5E-08 51.9 26.1 184 146-344 84-295 (494)
289 1ijq_A LDL receptor, low-densi 98.0 0.0029 1E-07 50.6 30.7 226 29-293 4-242 (316)
290 4hw6_A Hypothetical protein, I 98.0 0.0041 1.4E-07 52.1 25.6 196 129-337 182-432 (433)
291 3sov_A LRP-6, low-density lipo 98.0 0.0031 1.1E-07 50.4 29.8 220 35-296 12-245 (318)
292 3m0c_C LDL receptor, low-densi 98.0 0.0083 2.8E-07 54.3 29.6 203 127-343 422-637 (791)
293 3m0c_C LDL receptor, low-densi 98.0 0.0086 2.9E-07 54.2 31.3 235 19-293 387-636 (791)
294 2p4o_A Hypothetical protein; p 98.0 0.0036 1.2E-07 49.8 30.6 202 4-244 20-241 (306)
295 1n7d_A LDL receptor, low-densi 98.0 0.0002 6.9E-09 63.9 14.8 200 130-343 407-619 (699)
296 3sov_A LRP-6, low-density lipo 98.0 0.0042 1.4E-07 49.7 27.5 198 130-343 36-243 (318)
297 2uvk_A YJHT; unknown function, 97.9 0.0049 1.7E-07 50.3 21.6 147 188-346 168-350 (357)
298 4asc_A Kelch repeat and BTB do 97.8 0.0069 2.3E-07 48.4 21.1 146 137-290 98-278 (315)
299 1n7d_A LDL receptor, low-densi 97.8 0.00033 1.1E-08 62.6 13.9 221 35-292 385-617 (699)
300 4hw6_A Hypothetical protein, I 97.8 0.0084 2.9E-07 50.3 21.6 196 130-336 140-372 (433)
301 4asc_A Kelch repeat and BTB do 97.8 0.0071 2.4E-07 48.3 22.1 175 150-339 69-278 (315)
302 3qqz_A Putative uncharacterize 97.8 0.0056 1.9E-07 46.9 26.1 200 11-242 21-250 (255)
303 2p9w_A MAL S 1 allergenic prot 97.7 0.011 3.7E-07 46.9 24.1 147 147-296 99-272 (334)
304 2xbg_A YCF48-like protein; pho 97.7 0.012 4.2E-07 47.2 29.0 195 128-340 79-280 (327)
305 2be1_A Serine/threonine-protei 97.7 0.0027 9.3E-08 50.8 15.4 194 26-250 10-236 (339)
306 3amr_A 3-phytase; beta-propell 97.7 0.015 5E-07 46.6 22.0 189 26-244 40-262 (355)
307 2p9w_A MAL S 1 allergenic prot 97.6 0.009 3.1E-07 47.3 17.3 162 168-339 12-216 (334)
308 2xe4_A Oligopeptidase B; hydro 97.6 0.012 4E-07 53.3 20.4 192 130-335 175-395 (751)
309 2woz_A Kelch repeat and BTB do 97.6 0.019 6.5E-07 45.9 22.4 175 150-339 80-288 (318)
310 3ott_A Two-component system se 97.6 0.045 1.5E-06 49.7 32.2 269 16-334 21-303 (758)
311 3tc9_A Hypothetical hydrolase; 97.6 0.01 3.4E-07 49.8 17.9 154 170-338 138-301 (430)
312 2woz_A Kelch repeat and BTB do 97.4 0.031 1.1E-06 44.6 21.6 146 137-290 109-288 (318)
313 3kya_A Putative phosphatase; s 97.3 0.056 1.9E-06 45.8 26.5 210 130-346 187-483 (496)
314 2xe4_A Oligopeptidase B; hydro 97.3 0.0098 3.4E-07 53.8 16.2 155 170-338 175-354 (751)
315 4a0p_A LRP6, LRP-6, low-densit 97.3 0.087 3E-06 46.5 27.9 197 129-343 37-242 (628)
316 3ott_A Two-component system se 97.2 0.12 4.2E-06 46.9 33.0 286 18-339 192-503 (758)
317 1xi4_A Clathrin heavy chain; a 97.2 0.023 8E-07 53.9 16.9 195 136-345 73-296 (1630)
318 2be1_A Serine/threonine-protei 97.2 0.0012 4E-08 52.9 7.6 143 139-286 11-181 (339)
319 3qhy_B Beta-lactamase inhibito 97.1 0.066 2.3E-06 41.9 22.9 227 58-343 25-251 (282)
320 1bpo_A Protein (clathrin); cla 96.9 0.14 4.9E-06 42.2 27.1 222 35-291 85-333 (494)
321 2xzh_A Clathrin heavy chain 1; 96.9 0.12 3.9E-06 41.0 26.9 229 27-291 79-334 (365)
322 3pbp_A Nucleoporin NUP82; beta 96.9 0.15 5.1E-06 42.0 17.0 144 180-334 34-208 (452)
323 2zwa_A Leucine carboxyl methyl 96.6 0.4 1.4E-05 43.0 21.7 191 138-340 398-637 (695)
324 3sre_A PON1, serum paraoxonase 96.5 0.24 8.1E-06 40.1 18.1 141 186-339 81-253 (355)
325 3qhy_B Beta-lactamase inhibito 96.5 0.22 7.5E-06 38.9 24.3 240 18-314 25-264 (282)
326 2zwa_A Leucine carboxyl methyl 96.5 0.46 1.6E-05 42.6 22.0 152 139-291 453-637 (695)
327 3kya_A Putative phosphatase; s 96.4 0.36 1.2E-05 41.0 17.8 155 170-337 140-340 (496)
328 3ei3_A DNA damage-binding prot 96.3 0.78 2.7E-05 43.7 36.5 258 20-288 330-635 (1158)
329 3sre_A PON1, serum paraoxonase 96.3 0.33 1.1E-05 39.3 20.6 172 146-328 81-287 (355)
330 3s94_A LRP-6, low-density lipo 96.2 0.59 2E-05 41.2 33.9 191 17-246 40-244 (619)
331 3s94_A LRP-6, low-density lipo 96.1 0.66 2.3E-05 40.9 33.1 282 17-339 84-424 (619)
332 1xi4_A Clathrin heavy chain; a 96.1 0.54 1.8E-05 45.2 17.4 178 35-247 85-291 (1630)
333 2ism_A Putative oxidoreductase 95.7 0.69 2.3E-05 37.5 26.6 55 268-326 276-333 (352)
334 3kci_A Probable E3 ubiquitin-p 95.6 0.81 2.8E-05 37.7 34.7 283 25-341 9-348 (389)
335 3a9g_A Putative uncharacterize 95.2 0.99 3.4E-05 36.6 15.6 103 169-277 29-153 (354)
336 4a0p_A LRP6, LRP-6, low-densit 95.1 1.6 5.6E-05 38.5 39.3 197 130-342 341-553 (628)
337 3mvd_K Regulator of chromosome 94.8 1.5 5.1E-05 36.5 33.3 292 19-341 26-377 (423)
338 1tl2_A L10, protein (tachylect 94.6 0.98 3.3E-05 33.6 12.7 106 217-332 43-157 (236)
339 1tl2_A L10, protein (tachylect 94.1 1.3 4.5E-05 32.9 12.9 106 129-239 41-157 (236)
340 3pbp_A Nucleoporin NUP82; beta 93.8 2.4 8.3E-05 35.1 18.4 153 25-194 31-209 (452)
341 4d9s_A UVB-resistance protein 93.5 2.8 9.6E-05 34.7 39.2 297 15-341 14-360 (406)
342 3das_A Putative oxidoreductase 93.4 2.6 8.9E-05 33.9 15.9 151 168-325 31-219 (347)
343 2ism_A Putative oxidoreductase 92.8 3.2 0.00011 33.5 21.2 103 129-232 31-152 (352)
344 4d9s_A UVB-resistance protein 92.7 3.7 0.00013 33.9 31.7 251 18-290 69-358 (406)
345 2g8s_A Glucose/sorbosone dehyd 91.1 5.1 0.00018 32.3 26.0 62 269-336 288-350 (353)
346 2g8s_A Glucose/sorbosone dehyd 90.9 5.4 0.00019 32.2 14.1 107 170-277 19-148 (353)
347 3f7f_A Nucleoporin NUP120; nuc 90.8 1.6 5.4E-05 38.8 9.4 71 17-87 222-307 (729)
348 3a9g_A Putative uncharacterize 90.6 5.8 0.0002 32.0 30.3 54 269-326 276-330 (354)
349 1cru_A Protein (soluble quinop 90.5 7.2 0.00025 32.8 15.6 105 169-277 27-162 (454)
350 3of7_A Regulator of chromosome 90.1 7.9 0.00027 32.8 29.5 254 17-289 67-405 (473)
351 1cru_A Protein (soluble quinop 88.0 11 0.00038 31.7 13.4 107 214-327 27-163 (454)
352 3sbq_A Nitrous-oxide reductase 85.3 17 0.00058 31.5 11.7 72 218-289 326-408 (638)
353 1a12_A RCC1, regulator of chro 83.8 17 0.00059 30.0 34.5 252 57-340 59-367 (413)
354 1a12_A RCC1, regulator of chro 83.8 17 0.00059 30.0 30.0 248 17-289 59-365 (413)
355 4gq2_M Nucleoporin NUP120; bet 82.0 34 0.0012 32.1 17.3 37 305-345 237-273 (950)
356 3b7f_A Glycosyl hydrolase, BNR 80.9 21 0.00073 29.1 14.6 129 178-314 22-187 (394)
357 3kci_A Probable E3 ubiquitin-p 80.1 23 0.00078 29.0 32.4 251 18-290 54-346 (389)
358 2wg3_C Hedgehog-interacting pr 79.9 26 0.0009 29.5 12.5 27 218-244 17-44 (463)
359 4gq2_M Nucleoporin NUP120; bet 79.3 29 0.00098 32.6 12.2 35 130-164 237-273 (950)
360 3f7f_A Nucleoporin NUP120; nuc 77.5 10 0.00035 33.8 8.2 38 129-166 222-259 (729)
361 4fhn_B Nucleoporin NUP120; pro 77.3 53 0.0018 31.6 14.9 37 305-345 239-275 (1139)
362 3of7_A Regulator of chromosome 72.4 43 0.0015 28.2 31.1 201 128-339 147-406 (473)
363 3q6k_A 43.2 kDa salivary prote 67.4 50 0.0017 27.0 20.6 171 148-325 123-341 (381)
364 4fhn_B Nucleoporin NUP120; pro 64.4 34 0.0012 32.9 9.3 33 132-164 241-275 (1139)
365 3das_A Putative oxidoreductase 62.2 60 0.0021 26.1 29.7 60 263-326 265-326 (347)
366 2z5e_A Proteasome assembling c 59.7 8.8 0.0003 25.3 3.1 40 2-41 6-45 (122)
367 4a9v_A PHOX; hydrolase, beta-p 59.4 61 0.0021 28.2 8.9 39 189-232 510-548 (592)
368 3sbq_A Nitrous-oxide reductase 51.1 1.3E+02 0.0043 26.4 10.0 65 180-246 337-409 (638)
369 2wg3_C Hedgehog-interacting pr 46.1 1.3E+02 0.0046 25.3 12.0 28 169-196 14-44 (463)
370 3mvd_K Regulator of chromosome 42.9 1.4E+02 0.0048 24.6 38.4 247 18-290 76-375 (423)
371 3zwu_A Alkaline phosphatase PH 42.7 1.1E+02 0.0037 26.9 8.0 39 189-232 510-548 (592)
372 3b7f_A Glycosyl hydrolase, BNR 41.4 1.4E+02 0.0048 24.2 25.9 50 26-76 22-77 (394)
373 1q47_A Semaphorin 3A; beta pro 40.3 88 0.003 26.7 7.0 58 272-333 423-487 (495)
374 3no0_A DNA gyrase subunit A; D 40.1 1.3E+02 0.0043 23.2 17.1 205 10-245 14-246 (276)
375 1olz_A Semaphorin 4D; developm 37.7 1.3E+02 0.0046 26.8 8.0 57 272-333 417-477 (663)
376 3nvq_A Semaphorin-7A; beta-pro 34.8 1.4E+02 0.0048 26.1 7.4 59 271-333 381-444 (590)
377 3al9_A Plexin-A2; beta-propell 34.7 71 0.0024 27.6 5.7 59 271-333 414-476 (539)
378 4gz8_A Semaphorin-3A; multi-do 34.0 1.3E+02 0.0044 26.9 7.2 59 271-333 430-495 (667)
379 3no0_A DNA gyrase subunit A; D 29.5 1.9E+02 0.0066 22.2 21.9 192 139-339 36-247 (276)
380 3oky_B Putative uncharacterize 24.2 2.7E+02 0.0091 24.3 7.3 59 271-333 421-495 (565)
381 3al9_A Plexin-A2; beta-propell 23.8 2.4E+02 0.0081 24.4 7.0 69 171-240 402-476 (539)
382 1q47_A Semaphorin 3A; beta pro 22.9 3.1E+02 0.011 23.4 7.4 61 180-240 423-487 (495)
383 1zvt_A Topoisomerase IV subuni 22.3 2.6E+02 0.0088 21.2 14.6 149 140-289 4-163 (256)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-51 Score=343.94 Aligned_cols=281 Identities=22% Similarity=0.365 Sum_probs=251.7
Q ss_pred eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEc
Q 018591 8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~ 83 (353)
....+.+|.++|++++|+ +++|++|+.||+|++||+.+++....+.+|...|.+++|+ +++|++|+.||+|++||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 356789999999999997 7899999999999999999999999999999999999998 789999999999999999
Q ss_pred ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceee
Q 018591 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCL 161 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~ 161 (353)
.+.. .+.. +.+|...|.+++|+| +++++|+.|+.|++||+++++++
T Consensus 180 ~~~~-----~~~~---------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 180 QGFE-----CIRT---------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp TSSC-----EEEC---------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCc-----eeEE---------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 8765 3222 237999999999998 78999999999999999999999
Q ss_pred eeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC--------------
Q 018591 162 ESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-------------- 225 (353)
Q Consensus 162 ~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------- 225 (353)
..+.+|...|.++.+++ ..+++++.|+.|++||+++++ ....+..|...+ .+++|+|+
T Consensus 228 ~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~~~~ 301 (410)
T 1vyh_C 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHRHVV-ECISWAPESSYSSISEATGSET 301 (410)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE-EEEEECCSCGGGGGGGCCSCC-
T ss_pred EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----eeeEecCCCceE-EEEEEcCcccccchhhhccccc
Confidence 99999999999999943 389999999999999999887 667778888766 99999996
Q ss_pred ------CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEec
Q 018591 226 ------GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVG 297 (353)
Q Consensus 226 ------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 297 (353)
+.+|++|+.|+.|++||++++ .....+.+|...+.++.++ +++|++|+.||.|++||+.+++ .+.
T Consensus 302 ~~~~~~g~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---~~~ 374 (410)
T 1vyh_C 302 KKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---CMK 374 (410)
T ss_dssp ------CCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---CCE
T ss_pred cccCCCCCEEEEEeCCCeEEEEECCCC----ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eEE
Confidence 678999999999999999988 5666777888888888775 8899999999999999998877 566
Q ss_pred cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 298 ~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
.+.+|...|++++|+|+ +.+|++|+.||+|++|+++
T Consensus 375 ~~~~h~~~v~~l~~~~~----~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 375 TLNAHEHFVTSLDFHKT----APYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCSSCEEEEEECSS----SSCEEEEETTSEEEEEC--
T ss_pred EEcCCCCcEEEEEEcCC----CCEEEEEeCCCcEEEEeCC
Confidence 77899999999999999 9999999999999999863
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-50 Score=331.94 Aligned_cols=287 Identities=21% Similarity=0.361 Sum_probs=248.6
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
.+...+|++|.++|++++|+ +++|++|+.||+|++||..+++.+..+..|...|.+++|+ +++|++++.|+.+++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999996 8899999999999999999999999999999999999998 8899999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCcee
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
++.+..... .. ...+.+|...|.++.|.+ +.+++++.|+.|++||++++++
T Consensus 125 ~~~~~~~~~-~~---------------------------~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~ 176 (340)
T 1got_B 125 NLKTREGNV-RV---------------------------SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176 (340)
T ss_dssp ETTTCSBSC-EE---------------------------EEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEE
T ss_pred ECccCCCcc-ee---------------------------EEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcE
Confidence 997654110 11 122348999999999998 8899999999999999999999
Q ss_pred eeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcE
Q 018591 161 LESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV 238 (353)
Q Consensus 161 ~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 238 (353)
+..+.+|...|.+++|+++ .+++++.|+.|++||++++. ....+.+|...+ .+++|+|++++|++++.||.|
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-----~~~~~~~h~~~v-~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-----CRQTFTGHESDI-NAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSCE
T ss_pred EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-----eEEEEcCCcCCE-EEEEEcCCCCEEEEEcCCCcE
Confidence 9999999999999999443 89999999999999999887 677788888776 999999999999999999999
Q ss_pred EEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591 239 MGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV 316 (353)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (353)
++||++........ ....+...+.++++ ++++|++|+.||.|++||+.+++ .+..+.+|.++|++++|+|+
T Consensus 251 ~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~s~d-- 323 (340)
T 1got_B 251 RLFDLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDD-- 323 (340)
T ss_dssp EEEETTTTEEEEEE--CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTT--
T ss_pred EEEECCCCcEEEEE--ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc---EeeEeecCCCcEEEEEEcCC--
Confidence 99999887322211 11223335666655 58999999999999999998877 66678899999999999999
Q ss_pred CCCeEEEEccCCCeEEEEE
Q 018591 317 GGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 317 ~~~~~l~s~~~dg~i~iw~ 335 (353)
+.+|++|+.||.|++||
T Consensus 324 --g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 324 --GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --SSCEEEEETTSCEEEEC
T ss_pred --CCEEEEEcCCccEEecC
Confidence 99999999999999996
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-50 Score=325.28 Aligned_cols=284 Identities=20% Similarity=0.217 Sum_probs=249.9
Q ss_pred CCceeeeeeCccCceEEEEEC------CcEEEEEeCCCcEEEEeCCCcee--eEEeccCceeeEEEEEe--CCEEEEecC
Q 018591 5 SHRSLAVLSGHVGSVSSLALC------GEFILSASQGKDIIVWQQPDLRM--FTKFGHGDGSVKAVVTV--GNKVFTAHQ 74 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~------~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~ 74 (353)
.+...+.+++|.++|++++|+ +++|+||+.|++|++||+.+++. ...+.+|...|.++.++ +..+++++.
T Consensus 21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence 455667788999999999995 45899999999999999877654 45688999999999998 779999999
Q ss_pred CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591 75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV 152 (353)
Q Consensus 75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i 152 (353)
|++|++||+++++ .+. .+..|...+.+++|+| ++|++|+.||.|++
T Consensus 101 D~~i~lWd~~~~~-----~~~---------------------------~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i 148 (321)
T 3ow8_A 101 DAHIRLWDLENGK-----QIK---------------------------SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148 (321)
T ss_dssp TSEEEEEETTTTE-----EEE---------------------------EEECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred CCcEEEEECCCCC-----EEE---------------------------EEeCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence 9999999998775 221 2225777888999999 89999999999999
Q ss_pred EEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591 153 WRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY 230 (353)
Q Consensus 153 wd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 230 (353)
||+++++....+..|...|.+++|++ .++++++.||.|++||+++++ ....+.+|...+ .+++|+|++++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v-~~l~~spd~~~l~ 222 (321)
T 3ow8_A 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-----LLHTLEGHAMPI-RSLTFSPDSQLLV 222 (321)
T ss_dssp EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCC-CEEEECTTSCEEE
T ss_pred EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEEcccCCce-eEEEEcCCCCEEE
Confidence 99999999999989999999999944 389999999999999999887 677788888766 9999999999999
Q ss_pred eecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEE
Q 018591 231 GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC 308 (353)
Q Consensus 231 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~ 308 (353)
+++.|+.|++||++.. .....+.+|...+.+++++ +.+|++++.|+.|++||+.+++ .+..+.+|...|.+
T Consensus 223 s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~h~~~v~~ 295 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHA----NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---CVHTFFDHQDQVWG 295 (321)
T ss_dssp EECTTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEE
T ss_pred EEcCCCeEEEEECCCc----ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE---EEEEEcCCCCcEEE
Confidence 9999999999999887 5566778899888888774 8899999999999999999877 67778899999999
Q ss_pred EEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 309 LQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 309 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
++|+|+ +++|++++.||.|++||..
T Consensus 296 v~~s~~----g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 296 VKYNGN----GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECTT----SSEEEEEETTCCEEEEECC
T ss_pred EEECCC----CCEEEEEeCCCeEEEEeCC
Confidence 999999 9999999999999999964
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-49 Score=325.45 Aligned_cols=289 Identities=25% Similarity=0.307 Sum_probs=246.8
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
.+...+|+||.++|++++|+ +++|+||+.||+|++||..+++....+..|...|.+++|+ +..+++++.|+.+++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 45678899999999999996 8899999999999999999999999999999999999998 8899999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~ 159 (353)
++........ ......+.+|...|.++.|++ ..+++++.|++|++||+++++
T Consensus 134 ~~~~~~~~~~--------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~ 187 (354)
T 2pbi_B 134 PLTFDKNENM--------------------------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187 (354)
T ss_dssp ECCCCTTCCS--------------------------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred EEeccccccc--------------------------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe
Confidence 9865431100 011233447999999999999 689999999999999999999
Q ss_pred eeeeccccCcceEEEEEeC----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591 160 CLESIKAHDDAVNGLVASK----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD 235 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 235 (353)
++..+.+|...|.++++.+ +.+++++.||.|++||+++++ ....+..|...+ .+++|+|++.+|++++.|
T Consensus 188 ~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-----~~~~~~~h~~~v-~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-----CVQAFETHESDV-NSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE-EEEEECTTSSEEEEEETT
T ss_pred EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecCCCCCe-EEEEEeCCCCEEEEEeCC
Confidence 9999999999999999832 489999999999999999987 677788888776 999999999999999999
Q ss_pred CcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 313 (353)
+.|++||++........ ....+...+.++. +++++|++|+.|+.|++||+.+++ .+..+.+|.+.|++++|+|
T Consensus 262 ~~v~lwd~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIY--SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS---RVSILFGHENRVSTLRVSP 336 (354)
T ss_dssp SCEEEEETTTTEEEEEE--CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---EEEEECCCSSCEEEEEECT
T ss_pred CeEEEEECCCCcEEEEE--cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc---eEEEEECCCCcEEEEEECC
Confidence 99999999876322111 1112223444554 469999999999999999998877 5667889999999999999
Q ss_pred CCCCCCeEEEEccCCCeEEEEE
Q 018591 314 NAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 314 ~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
+ +++|++|+.||+|++|+
T Consensus 337 d----g~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 D----GTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp T----SSCEEEEETTSEEEEEC
T ss_pred C----CCEEEEEcCCCCEEecC
Confidence 9 99999999999999995
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.8e-50 Score=332.97 Aligned_cols=304 Identities=23% Similarity=0.304 Sum_probs=249.0
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
....+.++|+||.++|++++|+ +++|+||+.||+|++||+.+++....+..|...|.+++|+ +++|++++.|+.++
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence 3556778999999999999996 8899999999999999999999999999999999999998 88999999999999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~ 156 (353)
+|++........ .......+.+|.+.|.++.|.| ..|++|+.|+.|++||++
T Consensus 134 iw~~~~~~~~~~-------------------------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~ 188 (380)
T 3iz6_a 134 IFNLSSQADRDG-------------------------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT 188 (380)
T ss_dssp EEECCCCSSCCC-------------------------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT
T ss_pred EEECCCCccccC-------------------------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC
Confidence 999976431100 0011233448999999999988 579999999999999999
Q ss_pred Cceeeeec-----cccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591 157 DLKCLESI-----KAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 157 ~~~~~~~~-----~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
+++.+..+ .+|...|.++++. ++.+++|+.|++|++||++... .....+.+|...+ .+++|+|++++
T Consensus 189 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~~~~~h~~~v-~~v~~~p~~~~ 263 (380)
T 3iz6_a 189 TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVRTYHGHEGDI-NSVKFFPDGQR 263 (380)
T ss_dssp TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCEEECCCSSCC-CEEEECTTSSE
T ss_pred CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceEEECCcCCCe-EEEEEecCCCe
Confidence 99888776 6789999999993 3599999999999999998543 2567788888876 99999999999
Q ss_pred EEeecCCCcEEEeeccccccceeeeeec---cccceeE--EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc-cCC
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRWKLACET---KAHEMAV--LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI-TGH 302 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~h 302 (353)
|++++.||.|++||++++.......... ..+...+ .++++++++|++|+.||.|++||...++....+..+ .+|
T Consensus 264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 9999999999999999874322211111 1111224 445557999999999999999999887744333222 689
Q ss_pred CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
.+.|++++|+|+ +.+|++|+.||+|++|++...+.
T Consensus 344 ~~~v~~l~~s~d----g~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 344 EGRISCLGLSSD----GSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp CCCCCEEEECSS----SSEEEEECTTSCEEEEECCSSSS
T ss_pred CCceEEEEECCC----CCEEEEeeCCCCEEEEecCCCcc
Confidence 999999999999 99999999999999999987643
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-48 Score=314.09 Aligned_cols=285 Identities=17% Similarity=0.229 Sum_probs=242.9
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
.+..++|.+|.+.|++++|+ +++|++|+.||+|++||+++++.+..+..|..+|.++.|. +++|++|+.|++|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 35678899999999999996 8899999999999999999999999999999999999998 8899999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc-
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL- 158 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~- 158 (353)
|+++++ . ...+.+|...|.+++|+| .++++|+.|+.|++||++++
T Consensus 83 d~~~~~-----~---------------------------~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~ 130 (304)
T 2ynn_A 83 NYNTGE-----K---------------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130 (304)
T ss_dssp ETTTCC-----E---------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT
T ss_pred ECCCCc-----E---------------------------EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc
Confidence 998876 2 223347999999999999 79999999999999999877
Q ss_pred eeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC--CCCeEEeec
Q 018591 159 KCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD--DGKWVYGGG 233 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~ 233 (353)
.....+.+|...|.+++|++ ..+++++.|++|++||++... ....+..+....+..+.|+| ++.+|++++
T Consensus 131 ~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS-----CSEEEECCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----ccceeccCCcCcEEEEEEEEcCCCCEEEEEc
Confidence 55677889999999999954 389999999999999998776 33344433333348889886 678999999
Q ss_pred CCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591 234 SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA 311 (353)
Q Consensus 234 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~ 311 (353)
.|+.|++||++++ .....+.+|...+.++.++ +++|++|+.||.|++||+.+++ .+..+..|...+.+++|
T Consensus 206 ~D~~i~iWd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~---~~~~~~~~~~~~~~~~~ 278 (304)
T 2ynn_A 206 DDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---VEKTLNVGLERSWCIAT 278 (304)
T ss_dssp TTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---EEEEECCSSSSEEEEEE
T ss_pred CCCeEEEEeCCCC----ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---eeeeccCCCccEEEEEE
Confidence 9999999999987 5667778898888877765 7899999999999999999887 66777889999999999
Q ss_pred ecCCCCCCe--EEEEccCCCeEEEEEcCCC
Q 018591 312 SPNAVGGGF--LLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 312 ~~~~~~~~~--~l~s~~~dg~i~iw~~~~~ 339 (353)
+|+ +. ++++|+.|| +.+|++.+.
T Consensus 279 ~~~----~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 279 HPT----GRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp CTT----CGGGCEEEEETTE-EEEEECC--
T ss_pred CCC----CCceEEEEecCCc-eEEEEeccC
Confidence 998 43 688887665 778887653
No 7
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-48 Score=315.18 Aligned_cols=303 Identities=15% Similarity=0.202 Sum_probs=233.3
Q ss_pred CCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCc--eeeEEe-cc-CceeeEEEEEe--CCEEEEecCCCc
Q 018591 4 KSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDL--RMFTKF-GH-GDGSVKAVVTV--GNKVFTAHQDSR 77 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~--~~~l~s~~~dg~ 77 (353)
++.+++.+|++|.++|++++|++++|++|+.|++|++||+.++ +....+ .. |...|.+++|+ +++|++++.|++
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4677899999999999999999779999999999999999875 455556 44 89999999998 789999999999
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~ 155 (353)
|++|+++....... .......+.+|...|.+++|+| .+|++|+.|+.|++||+
T Consensus 82 v~iw~~~~~~~~~~-------------------------~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 82 VSIWAKEESADRTF-------------------------EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp EEEEEC-------C-------------------------CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred EEEEEcccCcCccc-------------------------cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 99999864321000 0011233458999999999999 89999999999999999
Q ss_pred CC----ceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC--CC
Q 018591 156 AD----LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD--GK 227 (353)
Q Consensus 156 ~~----~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~ 227 (353)
+. .+++..+.+|...|.+++|++ .+|++++.|++|++||...+. ..+...+.+|...+ .+++|+|+ +.
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~~v-~~~~~~~~~~~~ 212 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEGTV-WSSDFDKTEGVF 212 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCE-EEEEECCSSSSC
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCCcE-EEEEecCCCCee
Confidence 43 356778889999999999944 389999999999999987652 12566778888776 99999998 67
Q ss_pred eEEeecCCCcEEEeecccccc----ceeeeeeccc-cceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591 228 WVYGGGSDGFVMGWEGNVEIV----RWKLACETKA-HEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301 (353)
Q Consensus 228 ~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~-~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 301 (353)
+|++++.|+.|++||+..... .+.....+.. |...+.+++++ +.+|++++.||.|++||..+++.........+
T Consensus 213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 292 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC 292 (330)
T ss_dssp EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence 899999999999999876421 1123333443 78889999886 66899999999999999886532112223467
Q ss_pred CCc-CeEEEEeec--CCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 302 HEG-PVKCLQASP--NAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 302 h~~-~v~~~~~~~--~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
|.. .|.+++|+| + +++|++|+.||+|++|++++.
T Consensus 293 h~~~~v~~v~~~~~~~----~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 293 HGVYEINVVKWLELNG----KTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp TTTSCEEEEEEC---------CCEEEEETTSEEEEEEC---
T ss_pred cccceEEEEEEecCCC----ceEEEEecCCCcEEEEEeccC
Confidence 887 899999999 6 789999999999999998753
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.8e-47 Score=309.32 Aligned_cols=285 Identities=24% Similarity=0.410 Sum_probs=245.3
Q ss_pred CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591 5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV 80 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~ 80 (353)
..++..++.+|.++|++++|+ +++|++|+.||.|++|++.+++....+.+|...|.+++|+ +++|++++.||.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 456778899999999999996 8899999999999999999999999999999999999998 789999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~ 158 (353)
||+++++ . ...+.+|...|.++.|+| +++++|+.|+.|++||++++
T Consensus 92 wd~~~~~-----~---------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 139 (312)
T 4ery_A 92 WDVSSGK-----C---------------------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139 (312)
T ss_dssp EETTTCC-----E---------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCc-----E---------------------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 9998765 2 222337999999999999 89999999999999999999
Q ss_pred eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
+++..+..|..+|.+++|++ ..+++++.||.|++||+++++ ....+..+....+..++|+|+++++++++.|+
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 99999999999999999943 489999999999999999886 44444444444559999999999999999999
Q ss_pred cEEEeeccccccceeeeeeccccceeE----EEEE-EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAV----LCVC-LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA 311 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v----~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~ 311 (353)
.|++||++++ +....+.+|.... ..+. .++.+|++|+.||.|++||+.+++ .+..+.+|...|.+++|
T Consensus 215 ~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~ 287 (312)
T 4ery_A 215 TLKLWDYSKG----KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTAC 287 (312)
T ss_dssp EEEEEETTTT----EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC---EEEEECCCSSCEEEEEE
T ss_pred eEEEEECCCC----cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch---hhhhhhccCCcEEEEee
Confidence 9999999987 3444444444322 2233 348899999999999999999877 67778899999999999
Q ss_pred ecCCCCCCeEEEEcc--CCCeEEEEEcC
Q 018591 312 SPNAVGGGFLLYSGS--LDKSLRVWWVS 337 (353)
Q Consensus 312 ~~~~~~~~~~l~s~~--~dg~i~iw~~~ 337 (353)
+|+ +.+|++++ .|+.|++|+..
T Consensus 288 ~p~----~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 288 HPT----ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSS----SSEEEEEECTTTCCEEEEECC
T ss_pred cCc----CCceEEEEccCCccEEEecCC
Confidence 999 99999986 69999999864
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-47 Score=313.28 Aligned_cols=304 Identities=20% Similarity=0.283 Sum_probs=240.6
Q ss_pred CCceeeeeeCccC-ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeE---EeccCceeeEEEEEe--CCEEEEecCCC
Q 018591 5 SHRSLAVLSGHVG-SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFT---KFGHGDGSVKAVVTV--GNKVFTAHQDS 76 (353)
Q Consensus 5 ~~~~~~~l~~h~~-~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~--~~~l~s~~~dg 76 (353)
..+++.++++|.+ .|++++|+ |++||+|+.|++|++||+.++.... ...+|...|.+++|+ +++|++++.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4577899999998 99999996 8999999999999999998876432 236899999999998 78999999999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd 154 (353)
++++|+++.+... . ...+.+|...|.+++|+| ++|++|+.|+.|++||
T Consensus 84 ~v~iw~~~~~~~~---~---------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 84 TTCIWKKNQDDFE---C---------------------------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133 (345)
T ss_dssp CEEEEEECCC-EE---E---------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEccCCCeE---E---------------------------EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEE
Confidence 9999998765411 1 122337999999999999 8999999999999999
Q ss_pred cCCc---eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591 155 VADL---KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV 229 (353)
Q Consensus 155 ~~~~---~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 229 (353)
++++ +++..+.+|...|.+++|++ .+|++++.|+.|++||.+.++. .....+.+|...+ .+++|+|++++|
T Consensus 134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~~v-~~l~~sp~g~~l 209 (345)
T 3fm0_A 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHESTV-WSLAFDPSGQRL 209 (345)
T ss_dssp ECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCE-EEEEECTTSSEE
T ss_pred CCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCCce-EEEEECCCCCEE
Confidence 9765 45667888999999999944 3899999999999999987641 1345677888776 999999999999
Q ss_pred EeecCCCcEEEeecccccc-----------ceeeeeeccc-cceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcce--
Q 018591 230 YGGGSDGFVMGWEGNVEIV-----------RWKLACETKA-HEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKL-- 293 (353)
Q Consensus 230 ~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~-- 293 (353)
++++.|+.|++|+...... .+.....+.+ |...+.+++++ +..|++++.|+.|++|+.......
T Consensus 210 ~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~ 289 (345)
T 3fm0_A 210 ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ 289 (345)
T ss_dssp EEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS
T ss_pred EEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce
Confidence 9999999999999743211 1122233333 67778888775 789999999999999998764311
Q ss_pred ----EEeccccCCCcCeEEEEeecCCCCCC-eEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 294 ----CRVGAITGHEGPVKCLQASPNAVGGG-FLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 294 ----~~~~~~~~h~~~v~~~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
.......+|...|++++|+|+ + .+|++|+.||+|++|++.+++.+...+
T Consensus 290 ~~~~~~~~~~~~h~~~V~~v~~~p~----~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 290 PTFSLTAHLHQAHSQDVNCVAWNPK----EPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp CCEEEEEEETTSSSSCEEEEEECSS----STTEEEEEETTSCEEEEEECC--------
T ss_pred eeEEEEeeecccccCcEeEeEEeCC----CceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 112234689999999999998 6 599999999999999999988765543
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-47 Score=310.01 Aligned_cols=286 Identities=25% Similarity=0.393 Sum_probs=237.1
Q ss_pred CCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC-----ceeeEEeccCceeeEEEEEe--CCEEEEecC
Q 018591 5 SHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD-----LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ 74 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 74 (353)
...+..+|.||.++|++++|+ +++|++|+.|++|++||+.. +..+..+.+|...|.+++|+ +++|++++.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 456778899999999999996 47999999999999999753 34577889999999999998 789999999
Q ss_pred CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591 75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV 152 (353)
Q Consensus 75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i 152 (353)
|++|++||+++++ . ...+.+|...|.+++|++ .++++|+.|+.|++
T Consensus 86 D~~v~~wd~~~~~-----~---------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v 133 (319)
T 3frx_A 86 DKTLRLWDVATGE-----T---------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133 (319)
T ss_dssp TSEEEEEETTTTE-----E---------------------------EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCEEEEEECCCCC-----e---------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 9999999998875 2 223348999999999999 79999999999999
Q ss_pred EEcCCceeeeeccccCcceEEEEEeCC--------eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591 153 WRVADLKCLESIKAHDDAVNGLVASKG--------IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD 224 (353)
Q Consensus 153 wd~~~~~~~~~~~~~~~~v~~i~~~~~--------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (353)
||++ ++++..+.+|...|.++.+.+. .+++++.|+.|++||+++.+ ....+.+|...+ .+++|+|
T Consensus 134 wd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~h~~~v-~~~~~sp 206 (319)
T 3frx_A 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-----IEADFIGHNSNI-NTLTASP 206 (319)
T ss_dssp EETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-----EEEEECCCCSCE-EEEEECT
T ss_pred EECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-----hheeecCCCCcE-EEEEEcC
Confidence 9986 5677888899999999999432 79999999999999999876 667778888776 9999999
Q ss_pred CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEecc----
Q 018591 225 DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGA---- 298 (353)
Q Consensus 225 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---- 298 (353)
++++|++++.||.|++||+...+ ....+.. ...+.++++ ++.+|++++.+ .+++|+++.......+..
T Consensus 207 ~g~~l~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~ 280 (319)
T 3frx_A 207 DGTLIASAGKDGEIMLWNLAAKK----AMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG 280 (319)
T ss_dssp TSSEEEEEETTCEEEEEETTTTE----EEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT
T ss_pred CCCEEEEEeCCCeEEEEECCCCc----EEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc
Confidence 99999999999999999999873 3333333 345666655 57888887765 599999987653222211
Q ss_pred -ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 299 -ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 299 -~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
...|...+.+++|+|+ |++|++|+.||.|++|++.+.
T Consensus 281 ~~~~~~~~v~~~~~spd----g~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 281 YSKAAEPHAVSLAWSAD----GQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCGGGCCCEEEEEECTT----SSEEEEEETTSCEEEEEEEEC
T ss_pred cccCcCcceeEEEECCC----CCEEEEeecCceEEEEEEeec
Confidence 1245678999999999 999999999999999998764
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-47 Score=316.19 Aligned_cols=287 Identities=20% Similarity=0.231 Sum_probs=224.5
Q ss_pred eeeeCccCceEEEEEC--CcEEEEEeC------CCcEEEEeCCCceee----EEeccCceeeEEEEEe-CCEEEEecCCC
Q 018591 10 AVLSGHVGSVSSLALC--GEFILSASQ------GKDIIVWQQPDLRMF----TKFGHGDGSVKAVVTV-GNKVFTAHQDS 76 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~--~~~l~s~~~------dg~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~-~~~l~s~~~dg 76 (353)
....+|.+.|++++|+ |++|++|+. |+.|++|+..++... .....|...|.+++|+ .+.+++++.||
T Consensus 36 ~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg 115 (357)
T 4g56_B 36 TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSG 115 (357)
T ss_dssp ----CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTS
T ss_pred CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCC
Confidence 3445799999999996 999999997 788999998776533 3345678889999998 67788899999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd 154 (353)
+|++||+.+++..... .....+|...|++++|+| ++|++|+.|+.|++||
T Consensus 116 ~v~lWd~~~~~~~~~~----------------------------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 116 AVELWEILEKESLLVN----------------------------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp CEEEC--------CCC----------------------------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EEEEeeccccceeEEE----------------------------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999876521110 111227999999999999 7999999999999999
Q ss_pred cCCceeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeee--eccCCceeeEEEEcCC-CCe
Q 018591 155 VADLKCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGIL--EGHKDVSLNSVVVSDD-GKW 228 (353)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~ 228 (353)
+++++++..+.+|...|++++|.+ ..+++++.||.|++||+++++ ....+ ..+.. .+.+++|+|+ +.+
T Consensus 168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-----~~~~~~~~~~~~-~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-----PATRIDFCASDT-IPTSVTWHPEKDDT 241 (357)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-----CBCBCCCTTCCS-CEEEEEECTTSTTE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc-----eeeeeeeccccc-cccchhhhhcccce
Confidence 999999999999999999999932 378999999999999999876 33322 23333 3599999997 568
Q ss_pred EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C-cEEEEecCCCeEEEEecCCCcceEEeccccCCCcC
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G-EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGP 305 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~ 305 (353)
|++|+.|+.|++||++++ +....+..|...+.+++++ + ++|++|+.|++|+|||+++++ .+. ..+|.+.
T Consensus 242 la~g~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~---~~~-~~~H~~~ 313 (357)
T 4g56_B 242 FACGDETGNVSLVNIKNP----DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE---VFR-DLSHRDF 313 (357)
T ss_dssp EEEEESSSCEEEEESSCG----GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE---EEE-ECCCSSC
T ss_pred EEEeecccceeEEECCCC----cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc---EeE-ECCCCCC
Confidence 889999999999999987 4556677888889888875 4 689999999999999999876 333 3479999
Q ss_pred eEEEEeec-CCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 306 VKCLQASP-NAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 306 v~~~~~~~-~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
|++++|+| + +.+|++++.||+|++|++.+....
T Consensus 314 V~~vafsP~d----~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 314 VTGVAWSPLD----HSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEEEEECSSS----TTEEEEEETTSCEEEEECC-----
T ss_pred EEEEEEeCCC----CCEEEEEcCCCeEEEEECCCCCcc
Confidence 99999999 5 889999999999999999765443
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-47 Score=311.95 Aligned_cols=283 Identities=20% Similarity=0.208 Sum_probs=225.0
Q ss_pred eCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC-----------ceeeEEeccCceeeEEEEEe-CCEEEEecCCCcE
Q 018591 13 SGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD-----------LRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRI 78 (353)
Q Consensus 13 ~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i 78 (353)
..|...|.+++|+ |++|++++ |+++++||... .........+...|.+++|+ .+.|++++.||+|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 4578889999996 88888887 77888887321 11111222345679999998 7789999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~ 156 (353)
++||+++++..... .....+|...|++++|+| ++|++|+.|+.|++||++
T Consensus 106 ~lWd~~~~~~~~~~----------------------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 106 ELWELDENETLIVS----------------------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEEEECTTSSCEEE----------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEeccCCCceeEe----------------------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 99999887632111 112237999999999999 899999999999999999
Q ss_pred CceeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcCC-CCeEEe
Q 018591 157 DLKCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSDD-GKWVYG 231 (353)
Q Consensus 157 ~~~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~ 231 (353)
+++++..+.+|...|++++|++ ..+++++.|++|++||+++++ ....+.. .....+.+++|+|+ ++++++
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-----PASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-----CEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-----eeeeeecceeeccceeeeecCCCCcceEE
Confidence 9999999999999999999933 378999999999999999887 4444332 22333589999995 568899
Q ss_pred ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C-cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEE
Q 018591 232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G-EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC 308 (353)
Q Consensus 232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~ 308 (353)
|+.||.|++||++++ +....+.+|...|.++.++ + ++|++|+.|++|++||+.+++ +..+.+|.+.|++
T Consensus 233 g~~dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----~~~~~~H~~~V~~ 304 (344)
T 4gqb_B 233 GDENGTVSLVDTKST----SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----LFRSQAHRDFVRD 304 (344)
T ss_dssp EETTSEEEEEESCC------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----EEEECCCSSCEEE
T ss_pred eccCCcEEEEECCCC----cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----EEEEcCCCCCEEE
Confidence 999999999999987 5666778899999988875 4 589999999999999998865 3356899999999
Q ss_pred EEeecCCCCCC-eEEEEccCCCeEEEEEcCCCCC
Q 018591 309 LQASPNAVGGG-FLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 309 ~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
++|+|+ + .+|++++.||+|++|++.+...
T Consensus 305 v~~sp~----~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 305 ATWSPL----NHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECSS----STTEEEEEETTSCEEEEECCC---
T ss_pred EEEeCC----CCeEEEEEcCCCeEEEEECCCCCC
Confidence 999998 5 4788999999999999987643
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.5e-46 Score=306.51 Aligned_cols=286 Identities=17% Similarity=0.274 Sum_probs=227.3
Q ss_pred CceeeeeeCccCceEEEEE--------CCcEEEEEeCCCcEEEEeCCC-------ceeeEEeccCceeeEEEEEe--CCE
Q 018591 6 HRSLAVLSGHVGSVSSLAL--------CGEFILSASQGKDIIVWQQPD-------LRMFTKFGHGDGSVKAVVTV--GNK 68 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~--------~~~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~--~~~ 68 (353)
.++..+|+||.+.|++++| ++++|++|+.|++|++||+.+ +.....+.+|...|.+++|+ +.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4567889999999999999 478999999999999999864 34667889999999999998 789
Q ss_pred EEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC
Q 018591 69 VFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW 146 (353)
Q Consensus 69 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~ 146 (353)
+++++.|++|++||+++++ . ...+.+|...|.+++|+| .+|++++.
T Consensus 91 l~s~s~D~~v~lwd~~~~~-----~---------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 138 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGT-----T---------------------------YKRFVGHQSEVYSVAFSPDNRQILSAGA 138 (343)
T ss_dssp EEEEETTSEEEEEETTSSC-----E---------------------------EEEEECCCSCEEEEEECSSTTEEEEEET
T ss_pred EEEEcCCCcEEEEECCCCc-----E---------------------------EEEEcCCCCcEEEEEECCCCCEEEEEcC
Confidence 9999999999999998775 2 222347999999999999 79999999
Q ss_pred CCcEEEEEcCCceeeee--ccccCcceEEEEEeC------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeecc
Q 018591 147 DKTLKVWRVADLKCLES--IKAHDDAVNGLVASK------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGH 212 (353)
Q Consensus 147 dg~v~iwd~~~~~~~~~--~~~~~~~v~~i~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 212 (353)
|+.|++||+........ ...|...|.+++|++ .++++++.|+.|++||.. .+ ....+.+|
T Consensus 139 d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~-----~~~~~~~h 212 (343)
T 2xzm_R 139 EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQ-----IRYTFKAH 212 (343)
T ss_dssp TSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TE-----EEEEEECC
T ss_pred CCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cc-----eeEEEcCc
Confidence 99999999974333222 237889999999943 479999999999999943 32 45667788
Q ss_pred CCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591 213 KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 213 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
...+ .+++|+|++++|++++.||.|++||+...... ...+ .+...+.++++ ++.++++ +.|+.|++||+.++
T Consensus 213 ~~~v-~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~---~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 213 ESNV-NHLSISPNGKYIATGGKDKKLLIWDILNLTYP---QREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQ 286 (343)
T ss_dssp SSCE-EEEEECTTSSEEEEEETTCEEEEEESSCCSSC---SEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSC
T ss_pred cccc-eEEEECCCCCEEEEEcCCCeEEEEECCCCccc---ceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCC
Confidence 8766 99999999999999999999999999543211 1111 12334666665 4666654 56788999999876
Q ss_pred cceE--Eec--------cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 291 GKLC--RVG--------AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 291 ~~~~--~~~--------~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
+... .+. ...+|...|.+++|+|+ +++|++|+.||.|++|+++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 287 SKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL----GKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS----SCCEEEEETTSEEEEEEEEEE
T ss_pred CCCceEEeecCcchhhhhhcCCCCceEEEEECCC----CCeEEEecCCceEEEEEEEcc
Confidence 5321 111 12378889999999999 999999999999999998764
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.4e-45 Score=312.46 Aligned_cols=290 Identities=23% Similarity=0.385 Sum_probs=257.0
Q ss_pred CceeeeeeCccCc-eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591 6 HRSLAVLSGHVGS-VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 6 ~~~~~~l~~h~~~-v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~ 84 (353)
.+....+.+|.+. +.++.+++++|++|+.||.|++||+.+++.+..+.+|...|.++.++++.+++++.||+|++||++
T Consensus 108 ~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred cceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECC
Confidence 3456789999986 588889999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeec
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 164 (353)
+++ .+. .+.+|...|.++.++++.+++|+.||.|++||+++++.+..+
T Consensus 188 ~~~-----~~~---------------------------~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 188 TGE-----CIH---------------------------TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp TTE-----EEE---------------------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred cCc-----EEE---------------------------EECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 775 222 223799999999999999999999999999999999999999
Q ss_pred cccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591 165 KAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244 (353)
Q Consensus 165 ~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 244 (353)
.+|...|.++.+.++.+++++.||.|++||+++++ ....+.+|...+ .++.| ++.++++++.||.|++||++
T Consensus 236 ~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v-~~~~~--~~~~l~~~~~d~~i~i~d~~ 307 (445)
T 2ovr_B 236 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-----CLHTLQGHTNRV-YSLQF--DGIHVVSGSLDTSIRVWDVE 307 (445)
T ss_dssp ECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-----EEEEECCCSSCE-EEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred cCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-----EeEEecCCCCce-EEEEE--CCCEEEEEeCCCeEEEEECC
Confidence 99999999999988899999999999999999887 677778887765 88888 78899999999999999999
Q ss_pred ccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591 245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS 324 (353)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s 324 (353)
++ +....+.+|...+.++.++++++++|+.||.|++||+++++....+.....|...|++++|++ ++|++
T Consensus 308 ~~----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~s 377 (445)
T 2ovr_B 308 TG----NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK------NFVIT 377 (445)
T ss_dssp TC----CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS------SEEEE
T ss_pred CC----CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC------CEEEE
Confidence 87 556667788999999999999999999999999999998874433333334889999999964 59999
Q ss_pred ccCCCeEEEEEcCCCCCcccc
Q 018591 325 GSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 325 ~~~dg~i~iw~~~~~~~~~~~ 345 (353)
|+.||.|++||+.+++.+...
T Consensus 378 ~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 378 SSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCeEEEEECCCCceeeee
Confidence 999999999999998877654
No 15
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.5e-45 Score=300.09 Aligned_cols=289 Identities=26% Similarity=0.368 Sum_probs=234.1
Q ss_pred CCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCc-----eeeEEeccCceeeEEEEEe--CCEEEEecC
Q 018591 5 SHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDL-----RMFTKFGHGDGSVKAVVTV--GNKVFTAHQ 74 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 74 (353)
+.++..+|+||+++|++|+|+ +++|+||+.||+|+|||+.+. .+...+.+|...|.+++|+ +++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 445667899999999999996 579999999999999998754 3567789999999999998 789999999
Q ss_pred CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591 75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV 152 (353)
Q Consensus 75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i 152 (353)
|+.|++|+....... .....+...+..+.+.+ ..+++++.|+.+++
T Consensus 107 d~~i~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~ 154 (340)
T 4aow_A 107 DGTLRLWDLTTGTTT--------------------------------RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 154 (340)
T ss_dssp TSEEEEEETTTTEEE--------------------------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cccceEEeeccccee--------------------------------eeecCCCCceeEEEEeecCccceeecCCCeEEE
Confidence 999999998876521 11125667777888887 89999999999999
Q ss_pred EEcCCcee-eeeccccCcceEEEEEeC----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591 153 WRVADLKC-LESIKAHDDAVNGLVASK----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK 227 (353)
Q Consensus 153 wd~~~~~~-~~~~~~~~~~v~~i~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (353)
||...... .....+|...+..+++.+ ..+++++.|+.|++||+++.+ ....+.+|...+ .+++|+|+++
T Consensus 155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----~~~~~~~h~~~v-~~~~~s~~~~ 228 (340)
T 4aow_A 155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-----LKTNHIGHTGYL-NTVTVSPDGS 228 (340)
T ss_dssp ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-EEEEECTTSS
T ss_pred EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----eeeEecCCCCcE-EEEEECCCCC
Confidence 99876543 455678899999999932 278899999999999999887 677788888776 9999999999
Q ss_pred eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEe------cccc
Q 018591 228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRV------GAIT 300 (353)
Q Consensus 228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~ 300 (353)
+|++++.||.|++||++... ....+.. ...+.++.++ +..+++++.|+.|++||+++......+ ....
T Consensus 229 ~l~s~s~Dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 303 (340)
T 4aow_A 229 LCASGGKDGQAMLWDLNEGK----HLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSK 303 (340)
T ss_dssp EEEEEETTCEEEEEETTTTE----EEEEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------
T ss_pred EEEEEeCCCeEEEEEeccCc----eeeeecC-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeecc
Confidence 99999999999999999873 3333333 3456666665 456677778999999999876532222 2345
Q ss_pred CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 301 ~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+|...|++++|+|+ +++|++|+.||.|+|||+++|.
T Consensus 304 ~h~~~v~~l~~s~d----g~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 304 AEPPQCTSLAWSAD----GQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCCCEEEEEECTT----SSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCCEEEEEECCC----CCEEEEEeCCCEEEEEeCCCcC
Confidence 78999999999999 9999999999999999999875
No 16
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-45 Score=313.37 Aligned_cols=287 Identities=24% Similarity=0.348 Sum_probs=244.7
Q ss_pred eeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccc
Q 018591 10 AVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSEN 89 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~ 89 (353)
....+|...|+++++++++|++|+.||.|++||+.+++....+.+|...|.++.+++++|++|+.||.|++||+++++
T Consensus 127 ~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~-- 204 (435)
T 1p22_A 127 HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE-- 204 (435)
T ss_dssp ECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC--
T ss_pred ecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCc--
Confidence 344567788999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceee---eeccc
Q 018591 90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCL---ESIKA 166 (353)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~ 166 (353)
.+. .+.+|...|.++.|+++.+++|+.||.|++||+++++.. ..+.+
T Consensus 205 ---~~~---------------------------~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 254 (435)
T 1p22_A 205 ---MLN---------------------------TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 254 (435)
T ss_dssp ---EEE---------------------------EECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred ---EEE---------------------------EEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecC
Confidence 222 223789999999999999999999999999999887655 66788
Q ss_pred cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591 167 HDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 167 ~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 246 (353)
|...|.++.+.++.+++++.||.|++||+++++ ....+.+|...+ .++.++ ++++++|+.||.|++||++++
T Consensus 255 ~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v-~~~~~~--~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 255 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----FVRTLNGHKRGI-ACLQYR--DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCE-EEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred CCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----EEEEEcCCCCcE-EEEEeC--CCEEEEEeCCCeEEEEECCCC
Confidence 999999999988899999999999999999987 777888888766 888884 679999999999999999987
Q ss_pred ccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce------EEeccccCCCcCeEEEEeecCCCCCCe
Q 018591 247 IVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL------CRVGAITGHEGPVKCLQASPNAVGGGF 320 (353)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~ 320 (353)
.....+.+|...+.++.+++.+|++|+.||.|++||+.+++.. ..+..+.+|.+.|++++| + +.
T Consensus 327 ----~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~----~~ 396 (435)
T 1p22_A 327 ----ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D----EF 396 (435)
T ss_dssp ----CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C----SS
T ss_pred ----CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C----CC
Confidence 5666778899999999999999999999999999998765421 145567899999999999 4 67
Q ss_pred EEEEccCCCeEEEEEcCCCCCccccc
Q 018591 321 LLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 321 ~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
+|++++.||.|++||+.+........
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~~~~~~ 422 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPAAQAEP 422 (435)
T ss_dssp CEEECCSSSEEEEEC-----------
T ss_pred EEEEEeCCCEEEEEECCCCCCcccCC
Confidence 89999999999999999877655444
No 17
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-44 Score=307.47 Aligned_cols=289 Identities=22% Similarity=0.375 Sum_probs=255.5
Q ss_pred CCCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~ 82 (353)
..+++++..+.+|.++|++++|++++|++|+.||+|++||+.+++.+..+.+|...|.++.++++.+++++.||.|++||
T Consensus 146 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd 225 (445)
T 2ovr_B 146 AVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 225 (445)
T ss_dssp TTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEE
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeee
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLE 162 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 162 (353)
+++++ . ...+.+|...|.++.+.++.+++|+.||.|++||+++++++.
T Consensus 226 ~~~~~-----~---------------------------~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 226 IETGQ-----C---------------------------LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp SSSCC-----E---------------------------EEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred CCCCc-----E---------------------------EEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 98765 2 122337999999999988999999999999999999999999
Q ss_pred eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591 163 SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 163 ~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 242 (353)
.+.+|...|.++.+.+..+++++.||.|++||+++++ ....+.+|...+ .++.+ +++++++++.||.|++||
T Consensus 274 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v-~~~~~--~~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 274 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-----CIHTLTGHQSLT-SGMEL--KDNILVSGNADSTVKIWD 345 (445)
T ss_dssp EECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC-----EEEEECCCCSCE-EEEEE--ETTEEEEEETTSCEEEEE
T ss_pred EecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC-----EEEEEcCCcccE-EEEEE--eCCEEEEEeCCCeEEEEE
Confidence 9999999999999988899999999999999999987 677777887755 66666 467999999999999999
Q ss_pred ccccccceeeeeecc---ccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc--cCCCcCeEEEEeecCCCC
Q 018591 243 GNVEIVRWKLACETK---AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI--TGHEGPVKCLQASPNAVG 317 (353)
Q Consensus 243 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~ 317 (353)
++++. ....+. .|...+.++.+++++|++|+.||.|++||+.+++....+... .+|.+.|++++|+|+
T Consensus 346 ~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--- 418 (445)
T 2ovr_B 346 IKTGQ----CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT--- 418 (445)
T ss_dssp TTTCC----EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS---
T ss_pred CCCCc----EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC---
Confidence 98873 334444 378899999999999999999999999999998844433211 478889999999999
Q ss_pred CCeEEEEccCCCe----EEEEEcCCC
Q 018591 318 GGFLLYSGSLDKS----LRVWWVSKQ 339 (353)
Q Consensus 318 ~~~~l~s~~~dg~----i~iw~~~~~ 339 (353)
+.+|++|+.||+ |.+||+...
T Consensus 419 -~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 419 -KLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp -EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred -EEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999997 999999864
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-44 Score=302.17 Aligned_cols=283 Identities=24% Similarity=0.395 Sum_probs=231.3
Q ss_pred CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCce------------------eeEEEEEe--CCEEEE
Q 018591 14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG------------------SVKAVVTV--GNKVFT 71 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~------------------~v~~~~~~--~~~l~s 71 (353)
+|.+.|++++|+ |++||+|+ |+.+++|++.+++.+..+..|.. .|.+++|+ +++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 699999999996 88999976 68999999999998888765532 38999998 789999
Q ss_pred ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCc
Q 018591 72 AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKT 149 (353)
Q Consensus 72 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~ 149 (353)
++.|+.|++||+++++ . ...+.+|...|.+++|+| ..|++++.|+.
T Consensus 141 ~~~d~~i~iwd~~~~~-----~---------------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~ 188 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-----I---------------------------VMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188 (393)
T ss_dssp EETTSCEEEEETTTTE-----E---------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EcCCCeEEEEECCCCc-----E---------------------------EEEEccCCCCEEEEEEcCCCCEEEEecCCCc
Confidence 9999999999998765 2 222347999999999998 79999999999
Q ss_pred EEEEEcCCceeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeee-------eccCCceeeE
Q 018591 150 LKVWRVADLKCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGIL-------EGHKDVSLNS 219 (353)
Q Consensus 150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~v~~ 219 (353)
|++||++++++...+. +...+.++++.+ .++++++.|+.|++||++++. ....+ .+|...+ .+
T Consensus 189 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~h~~~v-~~ 261 (393)
T 1erj_A 189 VRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-----LVERLDSENESGTGHKDSV-YS 261 (393)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-----EEEEEC------CCCSSCE-EE
T ss_pred EEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----EEEeecccccCCCCCCCCE-EE
Confidence 9999999999887775 567899999943 389999999999999999876 33333 4566655 99
Q ss_pred EEEcCCCCeEEeecCCCcEEEeeccccccc--------eeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591 220 VVVSDDGKWVYGGGSDGFVMGWEGNVEIVR--------WKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 220 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~ 289 (353)
++|+|++++|++++.|+.|++||++..... ......+.+|...+.++.++ +.+|++|+.|+.|++||..+
T Consensus 262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999999999999999999764221 12334566788888888774 88999999999999999998
Q ss_pred CcceEEeccccCCCcCeEEEEeecCCC--CCCeEEEEccCCCeEEEEEcCCC
Q 018591 290 FGKLCRVGAITGHEGPVKCLQASPNAV--GGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
++ .+..+.+|...|.+++|+|+.. .++.+|++|+.||+|++|++.+.
T Consensus 342 ~~---~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 342 GN---PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CC---EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred Ce---EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 87 6677889999999999986210 01789999999999999998754
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.7e-44 Score=315.40 Aligned_cols=322 Identities=20% Similarity=0.266 Sum_probs=247.5
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEec-------cCceeeEEEEEe--CCEEEEe
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFG-------HGDGSVKAVVTV--GNKVFTA 72 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~--~~~l~s~ 72 (353)
++++++.++.+|.+.|++++|+ +++|++|+.|++|++||+.+++.+..+. +|.+.|.+++|+ +++|+++
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~ 257 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence 4567788999999999999996 8899999999999999999999988884 799999999998 7899999
Q ss_pred cCCCcEEEEEcccCccceeEEeeccccc-------------cceeeeecccce--eEe-ecccceeeeeecCCceEEEEE
Q 018591 73 HQDSRIRVWKVSRSSENVFRLVDTLPTT-------------KDYLGKFMKQSN--YVQ-TRRHHKRLWIEHADSISCLTV 136 (353)
Q Consensus 73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~i~~~~~ 136 (353)
+.|++|++||+++++. +..++.. ...+........ ... ........+.+|...|++++|
T Consensus 258 s~D~~v~lWd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~ 332 (611)
T 1nr0_A 258 SADKTIKIWNVATLKV-----EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS 332 (611)
T ss_dssp ETTSEEEEEETTTTEE-----EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred eCCCeEEEEeCCCCce-----eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE
Confidence 9999999999987652 2211110 000000000000 000 011123455689999999999
Q ss_pred eC--CeEEEecCCCcEEEEEcCCceeeeec-cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCccccc--------
Q 018591 137 YN--GLIYSGSWDKTLKVWRVADLKCLESI-KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHS-------- 204 (353)
Q Consensus 137 ~~--~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------- 204 (353)
+| ++|++++.|+.|++||+.+++....+ ..|...|.++++ +++.+++++.|+.+++|+..........
T Consensus 333 spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 333 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 99 89999999999999999998887766 679999999999 5569999999999999998754311000
Q ss_pred -c---------------------------eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec
Q 018591 205 -L---------------------------KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET 256 (353)
Q Consensus 205 -~---------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 256 (353)
. ...+ .+... +.+++|+|++++|++|+.|+.|++||+..+.. .....
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~-v~~va~spdg~~lasgs~D~~v~lwd~~~~~~--~~~~~- 487 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYN-SSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--SEVKT- 487 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSC-EEEEEECTTSCEEEEEETTSEEEEEEEETTEE--EEEEE-
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCC-ceEEEEeCCCCEEEEeCCCCeEEEEEccCCce--eeeec-
Confidence 0 0001 12222 48999999999999999999999999987521 11222
Q ss_pred cccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEec--cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591 257 KAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVG--AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR 332 (353)
Q Consensus 257 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~ 332 (353)
..|...|.++++ ++++|++++.|++|++|++.+... .+. .+.+|...|++++|+|+ +++|++|+.|++|+
T Consensus 488 ~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~--~~~~~~~~~H~~~V~~v~fspd----g~~lasgs~D~~v~ 561 (611)
T 1nr0_A 488 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE--LAHTNSWTFHTAKVACVSWSPD----NVRLATGSLDNSVI 561 (611)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE--ESCCCCCCCCSSCEEEEEECTT----SSEEEEEETTSCEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc--eeeeeeeeecccceeEEEECCC----CCEEEEEECCCcEE
Confidence 567778877776 589999999999999999987332 222 23459999999999999 99999999999999
Q ss_pred EEEcCCCCC
Q 018591 333 VWWVSKQSS 341 (353)
Q Consensus 333 iw~~~~~~~ 341 (353)
+|+++++..
T Consensus 562 lW~~~~~~~ 570 (611)
T 1nr0_A 562 VWNMNKPSD 570 (611)
T ss_dssp EEETTCTTS
T ss_pred EEECCCccc
Confidence 999988653
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-44 Score=319.07 Aligned_cols=292 Identities=17% Similarity=0.204 Sum_probs=243.2
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc--eeeEEeccCceeeEEEEEe--CCEEEEecCC--
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL--RMFTKFGHGDGSVKAVVTV--GNKVFTAHQD-- 75 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d-- 75 (353)
.+++....|.+|.+.|++++|+ |++||+|+.||+|+|||+.++ .....+.+|.+.|.+++|+ ++.|++++.+
T Consensus 47 ~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 47 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred CCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence 4567888999999999999996 899999999999999998754 3456788899999999998 7888888765
Q ss_pred --CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcE
Q 018591 76 --SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTL 150 (353)
Q Consensus 76 --g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v 150 (353)
+.|++||. +. .. ..+.+|...|.+++|+| . .|++|+.|+.|
T Consensus 127 ~~~~v~~wd~--~~-----~~---------------------------~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v 172 (611)
T 1nr0_A 127 RFGHVFLFDT--GT-----SN---------------------------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 172 (611)
T ss_dssp CSEEEEETTT--CC-----BC---------------------------BCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred ceeEEEEeeC--CC-----Cc---------------------------ceecCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence 46777774 22 11 11238999999999999 3 59999999999
Q ss_pred EEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeee-------ccCCceeeEEE
Q 018591 151 KVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILE-------GHKDVSLNSVV 221 (353)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~v~~~~ 221 (353)
++||..++++...+.+|...|.+++|+++ +|++++.|++|++||+.+++ ....+. +|...+ .+++
T Consensus 173 ~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~-----~~~~~~~~~~~~~~h~~~V-~~v~ 246 (611)
T 1nr0_A 173 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT-----KTGVFEDDSLKNVAHSGSV-FGLT 246 (611)
T ss_dssp EEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEECBCTTSSSCSSSSCE-EEEE
T ss_pred EEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc-----EeeeeccccccccccCCCE-EEEE
Confidence 99999999999999999999999999443 89999999999999998876 444442 577665 9999
Q ss_pred EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591 222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301 (353)
Q Consensus 222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 301 (353)
|+|++++|++++.|++|++||+.+++....+.. ...+......+.++++.+++++.|+.+++||...++ ....+.+
T Consensus 247 ~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~~~g 322 (611)
T 1nr0_A 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS---IDQVRYG 322 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEEECC
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC-CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceEEcC
Confidence 999999999999999999999988743222211 122344566777899999999999999999998765 5566789
Q ss_pred CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 302 HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 302 h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
|...|++++|+|+ +++|++++.|++|++||+.+++...
T Consensus 323 h~~~v~~l~~spd----g~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 323 HNKAITALSSSAD----GKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp CSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCCEEEEEEeCC----CCEEEEEeCCCcEEEEECCCCceee
Confidence 9999999999999 9999999999999999999876544
No 21
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.2e-45 Score=304.88 Aligned_cols=296 Identities=16% Similarity=0.154 Sum_probs=245.6
Q ss_pred CCCCCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCce------eeEEeccCceeeEEEEEe------C--
Q 018591 1 MPCKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLR------MFTKFGHGDGSVKAVVTV------G-- 66 (353)
Q Consensus 1 m~~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~------~-- 66 (353)
|+..-.+....+.+|.++|++++|++++|++|+.||.|++||+.+++ .+..+..|...|.+++|+ +
T Consensus 1 m~~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 1 MSKVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp --CEEEEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred CchhhhhhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcc
Confidence 44444566788999999999999999999999999999999999887 788888999999999997 4
Q ss_pred -CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec-----CCceEEEEEe---
Q 018591 67 -NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH-----ADSISCLTVY--- 137 (353)
Q Consensus 67 -~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~--- 137 (353)
.+|++++.||.|++|+++++........ ..+..| ...|.+++|+
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIF---------------------------EKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEE---------------------------EEECCSCTTGGGSCEEEEEEECCC
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccc---------------------------eeecccccccCCCcEEEEEEeecc
Confidence 6899999999999999987763111111 122256 5899999999
Q ss_pred -C--Ce-EEEecCCCcEEEEEcCC------ceeee-----ec-------cccCcceEEEEEeCC-eEEEEcCCCcEEEEe
Q 018591 138 -N--GL-IYSGSWDKTLKVWRVAD------LKCLE-----SI-------KAHDDAVNGLVASKG-IVYSASADGKIKAWG 194 (353)
Q Consensus 138 -~--~~-l~~~~~dg~v~iwd~~~------~~~~~-----~~-------~~~~~~v~~i~~~~~-~l~~~~~dg~i~iwd 194 (353)
+ .. |++++.||.|++||+++ ++.+. .+ ..|...|.+++|+++ .+++++.||.|++||
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 213 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEE
Confidence 7 77 99999999999999988 66666 66 448899999999433 999999999999999
Q ss_pred CCCCCcccccceeeeec---c---CCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccceeeeeeccc-------
Q 018591 195 KELGKSHCHSLKGILEG---H---KDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETKA------- 258 (353)
Q Consensus 195 ~~~~~~~~~~~~~~~~~---~---~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~------- 258 (353)
+++.+ ....+.. | ...+ .+++|+|++++|++++.| |.|++||++++ +....+..
T Consensus 214 ~~~~~-----~~~~~~~~~~h~~~~~~i-~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 214 LSTLR-----PLYNFESQHSMINNSNSI-RSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----ERIGSLSVPTHSSQA 283 (397)
T ss_dssp TTTTE-----EEEEEECCC---CCCCCE-EEEEECSSTTEEEEEEEETTEEEEEEEETTTC----CEEEEECBC------
T ss_pred CCCCc-----eeEEEeccccccccCCcc-ceEEECCCCCEEEEEecCCCCceEEEEECCCC----cccceeccCcccccc
Confidence 99876 6667776 6 5555 999999999999999999 99999999987 44455555
Q ss_pred ------cceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEecccc------CC---------------CcCeEEE
Q 018591 259 ------HEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAIT------GH---------------EGPVKCL 309 (353)
Q Consensus 259 ------~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~h---------------~~~v~~~ 309 (353)
|...+.++.++ +++|++++.||.|++||+.+++ .+..+. +| ...|+++
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 78888888775 8899999999999999999877 555566 67 9999999
Q ss_pred EeecCCCCCC----------eEEEEccCCCeEEEEEcCCCC
Q 018591 310 QASPNAVGGG----------FLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 310 ~~~~~~~~~~----------~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+|+|+ + ++|++++.||.|++|++++++
T Consensus 361 ~~~~~----g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 361 KFLKK----GWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECT----TTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred Eeccc----cccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999 7 799999999999999998763
No 22
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-44 Score=289.06 Aligned_cols=293 Identities=25% Similarity=0.354 Sum_probs=248.5
Q ss_pred CCCCceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
....++++++.+|.++|++++|. +++|++|+.||.|++||+.+++....+..|...|.+++|+ ++++++++.||.++
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 34568899999999999999995 8899999999999999999999999999999999999998 88999999999999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 159 (353)
+|++....... ....+.+|...|.++.|+++.+++++.||.|++|| .++
T Consensus 85 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~ 133 (313)
T 3odt_A 85 GVPLFATSGED-----------------------------PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGS 133 (313)
T ss_dssp EEETTCCTTSC-----------------------------C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTE
T ss_pred EEEeeecCCCC-----------------------------cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCc
Confidence 99997653110 12223379999999999889999999999999999 677
Q ss_pred eeeeccccCcceEEEEE-e--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcCCCCeEEeecCC
Q 018591 160 CLESIKAHDDAVNGLVA-S--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSDDGKWVYGGGSD 235 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~-~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 235 (353)
....+..|...+.++.+ + ++.+++++.||.|++||.. + ....+.. +... +.+++|+|++. +++++.|
T Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~-----~~~~~~~~~~~~-i~~~~~~~~~~-~~~~~~d 204 (313)
T 3odt_A 134 LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--K-----VIKTFSGIHNDV-VRHLAVVDDGH-FISCSND 204 (313)
T ss_dssp EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--E-----EEEEECSSCSSC-EEEEEEEETTE-EEEEETT
T ss_pred EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--c-----eEEEEeccCccc-EEEEEEcCCCe-EEEccCC
Confidence 88888899999999998 3 4599999999999999933 2 4455565 4444 59999999998 9999999
Q ss_pred CcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
|.|++||++++ +....+..|...+.++.++ ...|++++.||.|++||+.+++ .+..+..|...|.+++|+|+
T Consensus 205 g~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~ 277 (313)
T 3odt_A 205 GLIKLVDMHTG----DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS---LKQVITLPAISIWSVDCMSN 277 (313)
T ss_dssp SEEEEEETTTC----CEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC---EEEEEECSSSCEEEEEECTT
T ss_pred CeEEEEECCch----hhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc---eeEEEeccCceEEEEEEccC
Confidence 99999999987 5566677888899998886 2279999999999999999887 66677889999999999999
Q ss_pred CCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591 315 AVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
++ +++++.||.|++|++++++.....+.
T Consensus 278 ----~~-~~~~~~dg~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 278 ----GD-IIVGSSDNLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp ----SC-EEEEETTSCEEEEESCGGGCCC----
T ss_pred ----CC-EEEEeCCCcEEEEeCCCCceeehhhh
Confidence 77 66789999999999998887766553
No 23
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-43 Score=303.83 Aligned_cols=287 Identities=22% Similarity=0.368 Sum_probs=252.3
Q ss_pred ceeeeeeCccCc-eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcc
Q 018591 7 RSLAVLSGHVGS-VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 7 ~~~~~l~~h~~~-v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~ 84 (353)
.....+.+|.+. +.++.+++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+ +..+++|+.||+|++||++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred cceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence 356789999988 57889999999999999999999999999999999999999999998 5699999999999999998
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCcee
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
++. .+ ..+.+|...|.++++.+ .++++|+.||.|++||++++..
T Consensus 192 ~~~-----~~---------------------------~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 192 KGC-----CT---------------------------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp TTE-----EE---------------------------EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred CCc-----EE---------------------------EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 765 22 22337999999999984 7899999999999999987652
Q ss_pred -----------------------eeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCcee
Q 018591 161 -----------------------LESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSL 217 (353)
Q Consensus 161 -----------------------~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (353)
+..+.+|...+.++...++.+++++.||.|++||+++++ ....+.+|...+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v- 313 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-----CLYILSGHTDRI- 313 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecCCCCCE-
Confidence 456678899999998888999999999999999999887 677788888776
Q ss_pred eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEec
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG 297 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 297 (353)
.+++|+|+++++++++.||.|++||++++ +....+.+|...+.++.+++++|++++.||.|++||+.++... .
T Consensus 314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~---~ 386 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK---F 386 (464)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE---E
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCcee---e
Confidence 99999999999999999999999999988 5667778899999999999999999999999999999987632 2
Q ss_pred cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 298 ~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
.. .|...+..++|+|+ +++|++++ ||.|++||+++++.+..
T Consensus 387 ~~-~~~~~~~~~~~~~~----~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 387 SY-HHTNLSAITTFYVS----DNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp EE-ECTTCCCEEEEEEC----SSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred ee-cCCCCccEEEEEeC----CCEEEEec-CCeEEEEECCCCcEEeh
Confidence 22 36677888999999 99999998 89999999999988764
No 24
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-42 Score=310.45 Aligned_cols=284 Identities=25% Similarity=0.386 Sum_probs=226.8
Q ss_pred ceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC-----ceeeEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591 7 RSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD-----LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS 76 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 76 (353)
+....+++|++.|++|+|+ +++|+||+.||+|++||+.+ +.....+.+|...|.+++|+ +++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4456799999999999996 57999999999999999875 34567789999999999998 78999999999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd 154 (353)
+|++||+.++. . .+.+.+|...|.+++|++ .+|++|+.|+.|++||
T Consensus 453 ~v~vwd~~~~~-----~---------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 453 ELRLWDLAAGV-----S---------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEEETTTTE-----E---------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cEEEEECCCCc-----c---------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 99999998765 1 223348999999999999 7999999999999999
Q ss_pred cCCceeeee---ccccCcceEEEEEeCC----eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591 155 VADLKCLES---IKAHDDAVNGLVASKG----IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK 227 (353)
Q Consensus 155 ~~~~~~~~~---~~~~~~~v~~i~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (353)
......... ..+|...|.+++|+++ .+++++.|++|++||+++.+ +...+.+|...+ .+++|+|+++
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-----~~~~~~~h~~~v-~~v~~spdg~ 574 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-----LRSTLAGHTGYV-STVAVSPDGS 574 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE-EEEEECTTSS
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-----EEEEEcCCCCCE-EEEEEeCCCC
Confidence 865433322 2568899999999443 79999999999999999887 677888888776 9999999999
Q ss_pred eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEecc-------
Q 018591 228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGA------- 298 (353)
Q Consensus 228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------- 298 (353)
+|++++.||.|++||+.++. ....+.. ...+.++.+ ++.++++++ ++.|++||+++++....+..
T Consensus 575 ~l~sg~~Dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 648 (694)
T 3dm0_A 575 LCASGGKDGVVLLWDLAEGK----KLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAE 648 (694)
T ss_dssp EEEEEETTSBCEEEETTTTE----EEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----
T ss_pred EEEEEeCCCeEEEEECCCCc----eEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccc
Confidence 99999999999999999873 3333332 344656655 466666654 56699999998763322211
Q ss_pred ---------ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 299 ---------ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 299 ---------~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
...+...+++++|+|+ +++|++|+.||.|++|++..
T Consensus 649 ~~~~~~~~~~~~~~~~~~~l~~spd----g~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 649 KADNSGPAATKRKVIYCTSLNWSAD----GSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ------------CCCCEEEEEECTT----SSEEEEEETTSEEEEEEC--
T ss_pred cccccccccCCceeEEeeeEEEcCC----CCEEEEEcCCCeEEEEeccC
Confidence 0011224789999999 99999999999999999863
No 25
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-42 Score=304.92 Aligned_cols=276 Identities=28% Similarity=0.430 Sum_probs=239.1
Q ss_pred CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591 5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV 80 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~ 80 (353)
+++.+..+.+|..+|++++|+ +++|++++.||.|++||.. ++.+..+..|...|.+++|+ +++|++++.||.|++
T Consensus 292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 467788899999999999996 8899999999999999975 45567788899999999998 789999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~ 158 (353)
|+..... + ..+.+|...|.+++|+| .+|++++.|+.|++||. ++
T Consensus 371 ~~~~~~~------~---------------------------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~ 416 (577)
T 2ymu_A 371 WNRNGQL------L---------------------------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 416 (577)
T ss_dssp EETTCCE------E---------------------------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TC
T ss_pred EcCCCCE------E---------------------------EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CC
Confidence 9964321 1 12237899999999998 78999999999999995 67
Q ss_pred eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
+.+..+.+|...|++++|++ ..+++++.|+.|++||... + ....+.+|...+ .+++|+|++++|++++.|+
T Consensus 417 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~~~v-~~~~~spd~~~las~~~d~ 489 (577)
T 2ymu_A 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSSSV-RGVAFSPDGQTIASASDDK 489 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCSSCE-EEEEECTTSCEEEEEETTS
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCCCCE-EEEEEcCCCCEEEEEeCCC
Confidence 88888999999999999943 3899999999999999753 3 566778888776 9999999999999999999
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
.|++||... +....+.+|...|.++++ ++++|++++.||.|++||.. ++ .+..+.+|.+.|++++|+||
T Consensus 490 ~i~iw~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~---~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 490 TVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---LLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp EEEEEETTS-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC---EEEEEECCSSCEEEEEECTT
T ss_pred EEEEEcCCC-----CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CC---EEEEEcCCCCCEEEEEEcCC
Confidence 999999643 455667788888888877 48899999999999999964 44 67778899999999999999
Q ss_pred CCCCCeEEEEccCCCeEEEEE
Q 018591 315 AVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~ 335 (353)
+++|+|++.|++|++||
T Consensus 561 ----g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 ----GQTIASASSDKTVKLWN 577 (577)
T ss_dssp ----SSCEEEEETTSCEEEEC
T ss_pred ----CCEEEEEeCCCEEEEeC
Confidence 99999999999999997
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.6e-43 Score=282.08 Aligned_cols=253 Identities=22% Similarity=0.267 Sum_probs=214.9
Q ss_pred eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591 47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124 (353)
Q Consensus 47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (353)
+..+++.+|...|.+++|+ +.+|++++.||+|++||++++. . ...+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----~---------------------------~~~~ 51 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----E---------------------------VRSI 51 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----E---------------------------EEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----e---------------------------eEEe
Confidence 4567788999999999998 8899999999999999998765 2 1223
Q ss_pred eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCc
Q 018591 125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKS 200 (353)
Q Consensus 125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~ 200 (353)
..|..+|.++.|++ ++|++|+.|+.|++||+++++++..+.+|...|.+++|+++ ++++++.|++|++||++++.
T Consensus 52 ~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~- 130 (304)
T 2ynn_A 52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW- 130 (304)
T ss_dssp ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-
T ss_pred eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-
Confidence 37889999999998 89999999999999999999999999999999999999443 89999999999999998764
Q ss_pred ccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE----cCcEEEE
Q 018591 201 HCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL----VGEFLCS 275 (353)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~ 275 (353)
.+...+.+|...+ .+++|+| ++.+|++|+.|+.|++||++........ ...+...+..+.+ ++.+|++
T Consensus 131 ---~~~~~~~~h~~~v-~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s 203 (304)
T 2ynn_A 131 ---ALEQTFEGHEHFV-MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPDKPYMIT 203 (304)
T ss_dssp ---EEEEEECCCCSCE-EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCEEEEEECCSTTCCEEEE
T ss_pred ---chhhhhcccCCcE-EEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---ccCCcCcEEEEEEEEcCCCCEEEE
Confidence 2456677888776 9999999 6789999999999999999876432222 2234445555544 4679999
Q ss_pred ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 276 GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 276 ~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
|+.|+.|++||+++++ .+..+.+|...|.+++|+|+ +.+|++|+.||+|++||+.+++......
T Consensus 204 ~s~D~~i~iWd~~~~~---~~~~~~~h~~~v~~~~~~p~----~~~l~s~s~Dg~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPT----LPIIISGSEDGTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp EETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSS----SSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EcCCCeEEEEeCCCCc---cceeeCCCCCCEEEEEECCC----CCEEEEEcCCCeEEEEECCCCceeeecc
Confidence 9999999999999877 67788999999999999999 9999999999999999999988766554
No 27
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-42 Score=286.17 Aligned_cols=287 Identities=16% Similarity=0.218 Sum_probs=239.9
Q ss_pred ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591 7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~ 82 (353)
.....|.+|.++|++++|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+ +++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 3445689999999999996 8899999999999999999999999999999999999998 78999999999999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC-----CcEEEEEc
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD-----KTLKVWRV 155 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d-----g~v~iwd~ 155 (353)
+++++ .+..+ .+...+.++.|++ ..+++++.+ +.|++||+
T Consensus 103 ~~~~~-----~~~~~----------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 103 VSNGQ-----CVATW----------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp TTTCC-----EEEEE----------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred CCCCc-----EEEEe----------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence 98775 22111 3778899999999 889999988 99999999
Q ss_pred CCce-----------eeeeccccCc--ceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591 156 ADLK-----------CLESIKAHDD--AVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV 220 (353)
Q Consensus 156 ~~~~-----------~~~~~~~~~~--~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (353)
.... ....+..|.. .+.+++|++ ..+++++.||.|++||+++.. .....+..|...+ .++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v-~~~ 224 (369)
T 3zwl_B 150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVDSIDLHEKSI-SDM 224 (369)
T ss_dssp EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEEEEECCSSCE-EEE
T ss_pred cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEEEEecCCCce-eEE
Confidence 7653 2334445555 899999933 489999999999999999832 2667777777766 999
Q ss_pred EEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEEEEecCCC--------------eEEE
Q 018591 221 VVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADK--------------SIGI 284 (353)
Q Consensus 221 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg--------------~i~i 284 (353)
+|+|++++|++++.|+.|++||+++... ...+. +...+.++ .++++++++++.++ .+++
T Consensus 225 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDTNSFLVDVSTLQV----LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF 299 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCE----EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEE
T ss_pred EECCCCCEEEEecCCceEEEEECCCCce----eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence 9999999999999999999999998743 22222 34445444 45689999999888 8999
Q ss_pred EecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 285 WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 285 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
||..+++ .+..+.+|...|++++|+|+ +++|++++.||.|++|+++++....
T Consensus 300 ~d~~~~~---~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 300 YHKIFEE---EIGRVQGHFGPLNTVAISPQ----GTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp EETTTCC---EEEEEECCSSCEEEEEECTT----SSEEEEEETTSEEEEEEECHHHHTC
T ss_pred EecCCCc---chhheecccCcEEEEEECCC----CCEEEEEcCCCeEEEEECccccchh
Confidence 9999887 66677899999999999999 9999999999999999998765433
No 28
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.9e-43 Score=291.02 Aligned_cols=291 Identities=16% Similarity=0.141 Sum_probs=230.1
Q ss_pred CCCceeeeeeCccCceEEEEEC--C-cEEEEEeCCCcEEEEeCCCceeeEEec--cCceeeEEEEEe---CCEEEEecCC
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--G-EFILSASQGKDIIVWQQPDLRMFTKFG--HGDGSVKAVVTV---GNKVFTAHQD 75 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~-~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~---~~~l~s~~~d 75 (353)
++.+....+.+|.+.|++++|+ + ++|++|+.||.|++||+.+++....+. +|...|.+++|+ +++|++++.|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 4567788999999999999996 5 799999999999999999888887775 699999999997 4789999999
Q ss_pred CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEE
Q 018591 76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVW 153 (353)
Q Consensus 76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iw 153 (353)
+.|++||++... ....... .+|...|.+++|++ ..+++|+.|+.|++|
T Consensus 141 ~~i~iwd~~~~~---~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 141 GATTLRDFSGSV---IQVFAKT---------------------------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 190 (383)
T ss_dssp TEEEEEETTSCE---EEEEECC---------------------------CCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred CEEEEEECCCCc---eEEEecc---------------------------CCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence 999999998532 1111100 14668899999999 899999999999999
Q ss_pred EcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeE
Q 018591 154 RVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWV 229 (353)
Q Consensus 154 d~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 229 (353)
|+ +++++..+..|...|.+++|+++ .+++++.|+.|++||+++.+.. ..+...+ .|...+ .+++|+| ++++|
T Consensus 191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-~~~~~v-~~~~~s~~~~~~l 266 (383)
T 3ei3_B 191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEM-PHEKPV-NAAYFNPTDSTKL 266 (383)
T ss_dssp ET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEEEE-ECSSCE-EEEEECTTTSCEE
T ss_pred EC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEEEe-cCCCce-EEEEEcCCCCCEE
Confidence 99 57888889999999999999443 7999999999999999974311 1133333 466655 9999999 99999
Q ss_pred EeecCCCcEEEeeccccccceeeeeec---cccc----------eeE--EEEEEcCcEEEEecCCCeEEEEecCCCcceE
Q 018591 230 YGGGSDGFVMGWEGNVEIVRWKLACET---KAHE----------MAV--LCVCLVGEFLCSGSADKSIGIWKREAFGKLC 294 (353)
Q Consensus 230 ~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~----------~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 294 (353)
++++.|+.|++||+++........... ..|. ..+ .++++++++ +|+.||.|++||+.+++
T Consensus 267 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~--- 341 (383)
T 3ei3_B 267 LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG--- 341 (383)
T ss_dssp EEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC---
T ss_pred EEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc---
Confidence 999999999999998874332222111 0111 122 333445666 88899999999999887
Q ss_pred EeccccC--CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 295 RVGAITG--HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 295 ~~~~~~~--h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
.+..+.+ |...+..++|+|+ +++|++++ ||.|++|++++
T Consensus 342 ~~~~l~~~~~~~~~~~~~~s~~----g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 342 LVHQLRDPNAAGIISLNKFSPT----GDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEECBTTBCSCCCEEEECTT----SSEEEEEE-TTEEEEEECC-
T ss_pred eeeeecCCCCCceEEEEEEecC----ccEEEEec-CCcEEEEecCC
Confidence 4555555 5677888899999 99999997 99999999875
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.5e-41 Score=297.17 Aligned_cols=284 Identities=27% Similarity=0.428 Sum_probs=244.5
Q ss_pred CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591 5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV 80 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~ 80 (353)
+++.+..+.+|..+|++++|+ +++|++++.|+.|++||. +++.+..+.+|...|.+++|+ +..+++++.||.|++
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 567888999999999999996 889999999999999996 567888899999999999998 789999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~ 158 (353)
||..... ...+.+|...|.+++|+| ..+++++.|+.|++||. ++
T Consensus 330 w~~~~~~---------------------------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~ 375 (577)
T 2ymu_A 330 WNRNGQH---------------------------------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NG 375 (577)
T ss_dssp EETTSCE---------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TC
T ss_pred EeCCCCe---------------------------------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CC
Confidence 9986543 112237889999999999 79999999999999995 67
Q ss_pred eeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 159 KCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
+.+..+.+|...|.+++|+++ ++++++.|+.|++||.. ++ ....+.+|...+ .+++|+|++++|++++.|+
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~-----~~~~~~~~~~~v-~~~~~s~d~~~l~~~~~d~ 448 (577)
T 2ymu_A 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-----LLQTLTGHSSSV-WGVAFSPDDQTIASASDDK 448 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CC-----EEEEEECCSSCE-EEEEECTTSSEEEEEETTS
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CC-----EEEEecCCCCCe-EEEEECCCCCEEEEEcCCC
Confidence 888889999999999999443 89999999999999964 33 567778888776 9999999999999999999
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
.|++||... +....+.+|...+.++++ ++++|++++.|+.|++||.. ++ .+..+.+|...|++++|+|+
T Consensus 449 ~v~~w~~~~-----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~---~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 449 TVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---LLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp EEEEEETTS-----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC---EEEEEECCSSCEEEEEECTT
T ss_pred EEEEEECCC-----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC---EEEEEeCCCCCEEEEEEcCC
Confidence 999999754 345566778888887776 58899999999999999964 44 56778899999999999999
Q ss_pred CCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 315 AVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
+++|++++.||.|++||. +++.+..
T Consensus 520 ----g~~l~s~~~dg~v~lwd~-~~~~~~~ 544 (577)
T 2ymu_A 520 ----GQTIASASDDKTVKLWNR-NGQLLQT 544 (577)
T ss_dssp ----SSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred ----CCEEEEEECcCEEEEEeC-CCCEEEE
Confidence 999999999999999996 4444443
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.4e-43 Score=296.27 Aligned_cols=296 Identities=15% Similarity=0.126 Sum_probs=219.1
Q ss_pred CCCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceee--EEeccCceeeEEEEEe---CCEEEEecCC
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMF--TKFGHGDGSVKAVVTV---GNKVFTAHQD 75 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~---~~~l~s~~~d 75 (353)
...+......+|...|+||+|+ +++||+|+.||.|+|||+.+++.. ..+.+|.+.|.+|+|+ +++|++++.|
T Consensus 107 ~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp TTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred cceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 4456667788999999999996 579999999999999999877644 4456899999999996 6799999999
Q ss_pred CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEE
Q 018591 76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVW 153 (353)
Q Consensus 76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iw 153 (353)
|+|++||++++.. ...... ..+...+.+++|++ .+|++|+.||.|++|
T Consensus 187 ~~v~iwd~~~~~~---~~~~~~---------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 187 GTTRLQDFKGNIL---RVFASS---------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp SCEEEEETTSCEE---EEEECC---------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred CEEEEeeccCCce---eEEecc---------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 9999999976531 111100 03445678899998 899999999999999
Q ss_pred EcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591 154 RVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY 230 (353)
Q Consensus 154 d~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 230 (353)
|++ ++.+..+.+|...|++++|++. ++++++.|+.|++||+++.+.. .......+|...+ .+++|+|++++|+
T Consensus 237 d~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~--~~~~~~~~h~~~v-~~~~~spdg~~l~ 312 (435)
T 4e54_B 237 NMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK--ASFLYSLPHRHPV-NAACFSPDGARLL 312 (435)
T ss_dssp ESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS--SCCSBCCBCSSCE-EECCBCTTSSEEE
T ss_pred ccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc--ceEEEeeeccccc-cceeECCCCCeeE
Confidence 985 5677888999999999999432 7889999999999999876521 1122334566655 9999999999999
Q ss_pred eecCCCcEEEeeccccccceeeeeeccccc--eeE--EEEEEcCcEEEEe------------cCCCeEEEEecCCCcceE
Q 018591 231 GGGSDGFVMGWEGNVEIVRWKLACETKAHE--MAV--LCVCLVGEFLCSG------------SADKSIGIWKREAFGKLC 294 (353)
Q Consensus 231 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~v--~~~~~~~~~l~~~------------~~dg~i~iw~~~~~~~~~ 294 (353)
+++.||.|++||+..+............+. ... ..+.+++.+++++ ..++.|++||..+++.
T Consensus 313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~-- 390 (435)
T 4e54_B 313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM-- 390 (435)
T ss_dssp EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--
T ss_pred EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--
Confidence 999999999999988643322221111100 001 1122223333333 3456899999999873
Q ss_pred Eecc-ccCCCcCeEEE-EeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 295 RVGA-ITGHEGPVKCL-QASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 295 ~~~~-~~~h~~~v~~~-~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
+.. ..+|...|.++ +|+|+ +++|++|+ |+.|+||++++++.
T Consensus 391 -~~~l~~~~~~~v~s~~~fspd----g~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 391 -MCQLYDPESSGISSLNEFNPM----GDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp -EEEECCSSCCCCCCEEEECTT----SSCEEEEC-SSEEEECCCC----
T ss_pred -EEEEeCCCCCcEEEEEEECCC----CCEEEEEc-CCcEEEEECCcCee
Confidence 333 35788889887 69999 99999886 78999999998764
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.1e-42 Score=285.38 Aligned_cols=293 Identities=13% Similarity=0.120 Sum_probs=233.8
Q ss_pred eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcc
Q 018591 11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~ 84 (353)
.+..|.++|++++|+ +++|++|+.||.|++||+.+++ .+..+..|...|.+++|+ +++|++++.||.|++||++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 456699999999996 8899999999999999999987 888999999999999998 8899999999999999997
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee--
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC-- 160 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~-- 160 (353)
+++... ...+..|...|.+++|++ .++++++.|+.|++||++.++.
T Consensus 83 ~~~~~~------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 83 GRTWKP------------------------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp TTEEEE------------------------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred CCeeee------------------------------eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 764110 011126889999999998 7999999999999999987652
Q ss_pred --eeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCc-------------ccccceeeeeccCCceeeEEEEc
Q 018591 161 --LESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKS-------------HCHSLKGILEGHKDVSLNSVVVS 223 (353)
Q Consensus 161 --~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~ 223 (353)
......|...|.+++|.+ ..+++++.||.|++||++.... ........+..|...+ .+++|+
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~ 211 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV-HGVCFS 211 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE-EEEEEC
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE-EEEEEC
Confidence 333467899999999943 3899999999999999752210 0112556666777665 999999
Q ss_pred CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCC--Ccc-------
Q 018591 224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREA--FGK------- 292 (353)
Q Consensus 224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~--~~~------- 292 (353)
|++++|++++.|+.|++||++++ +....+..|...+.++.+ ++.++++| .|+.|++|++.+ ++-
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~ 286 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADADKK----MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLD 286 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCC
T ss_pred CCCCEEEEEeCCCEEEEEECCCC----ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccC
Confidence 99999999999999999999987 455556677777776665 57777777 999999999987 310
Q ss_pred ----------------------eEEe------ccc-cCCCcCeEEEEeecCCCCCC---eEEEEccCCCeEEEEEcCCCC
Q 018591 293 ----------------------LCRV------GAI-TGHEGPVKCLQASPNAVGGG---FLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 293 ----------------------~~~~------~~~-~~h~~~v~~~~~~~~~~~~~---~~l~s~~~dg~i~iw~~~~~~ 340 (353)
.... ..+ .+|..+|++++|.+.. + .+|++++.||.|++|++.+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 287 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG---KAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEEST---TTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCC---CcceeeEEEecCCCceEEEEecChh
Confidence 0000 223 4899999999977541 5 899999999999999998765
Q ss_pred Cc
Q 018591 341 ST 342 (353)
Q Consensus 341 ~~ 342 (353)
.+
T Consensus 364 ~~ 365 (372)
T 1k8k_C 364 SA 365 (372)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-42 Score=289.05 Aligned_cols=249 Identities=25% Similarity=0.396 Sum_probs=221.7
Q ss_pred eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591 49 FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE 126 (353)
Q Consensus 49 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (353)
...+.+|..+|++++|+ +.+|++|+.||+|++||+.++.. ...+.+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--------------------------------~~~l~~ 148 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------------------------------ERTLKG 148 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--------------------------------CEEECC
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------------------------------EEEEec
Confidence 45677899999999998 78999999999999999987751 223348
Q ss_pred cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccc
Q 018591 127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHC 202 (353)
Q Consensus 127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 202 (353)
|...|.+++|++ .+|++|+.|+.|++||+.+++++..+.+|...|.+++|.+ +.+++++.|++|++||++++.
T Consensus 149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~--- 225 (410)
T 1vyh_C 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY--- 225 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---
Confidence 999999999998 7999999999999999999999999999999999999943 489999999999999999987
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-------------
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV------------- 269 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~------------- 269 (353)
....+.+|...+ .++.++|++.++++++.|+.|++||+.++ .....+..|...+.++.++
T Consensus 226 --~~~~~~~h~~~v-~~~~~~~~g~~l~s~s~D~~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 298 (410)
T 1vyh_C 226 --CVKTFTGHREWV-RMVRPNQDGTLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATG 298 (410)
T ss_dssp --EEEEEECCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred --EEEEEeCCCccE-EEEEECCCCCEEEEEcCCCeEEEEECCCC----ceeeEecCCCceEEEEEEcCcccccchhhhcc
Confidence 677888888876 99999999999999999999999999887 4556677888888888775
Q ss_pred ---------CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 270 ---------GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 270 ---------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+.+|++|+.|+.|++||+++++ .+..+.+|...|++++|+|+ +++|++|+.||.|++||+.+++
T Consensus 299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~----g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGM---CLMTLVGHDNWVRGVLFHSG----GKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSS----SSCEEEEETTTEEEEECCTTSC
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCCc---eEEEEECCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCc
Confidence 4589999999999999999877 67778899999999999999 9999999999999999999888
Q ss_pred Cccccc
Q 018591 341 STSDSE 346 (353)
Q Consensus 341 ~~~~~~ 346 (353)
++....
T Consensus 372 ~~~~~~ 377 (410)
T 1vyh_C 372 CMKTLN 377 (410)
T ss_dssp CCEEEE
T ss_pred eEEEEc
Confidence 776654
No 33
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.6e-42 Score=277.58 Aligned_cols=254 Identities=23% Similarity=0.302 Sum_probs=218.8
Q ss_pred ceeeEEeccCceeeEEEEEe------CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccc
Q 018591 46 LRMFTKFGHGDGSVKAVVTV------GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRH 119 (353)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (353)
+.......+|.+.|.+++|+ +.+|++|+.|++|++|+++.+... .
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---~-------------------------- 72 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---L-------------------------- 72 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---E--------------------------
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---e--------------------------
Confidence 34456678899999999995 458999999999999999765411 1
Q ss_pred ceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeC
Q 018591 120 HKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGK 195 (353)
Q Consensus 120 ~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~ 195 (353)
...+.+|...|.++++++ ..+++++.|+.|++||+.+++++..+..|...+.+++|++ ..+++++.||.|++||+
T Consensus 73 -~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 73 -QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp -EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred -eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 112338999999999999 7899999999999999999999999999999999999944 39999999999999999
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFL 273 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l 273 (353)
++++ ....+..+...+ .+++|+|++++|++++.||.|++||++++ +....+.+|...+.++.+ ++++|
T Consensus 152 ~~~~-----~~~~~~~~~~~v-~~~~~spdg~~lasg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spd~~~l 221 (321)
T 3ow8_A 152 ESGK-----KEYSLDTRGKFI-LSIAYSPDGKYLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFSPDSQLL 221 (321)
T ss_dssp TTCS-----EEEEEECSSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCCCEEEECTTSCEE
T ss_pred CCCc-----eeEEecCCCceE-EEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEcCCCCEE
Confidence 9887 555666666655 99999999999999999999999999987 566667788888877776 48899
Q ss_pred EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
++|+.|+.|++||+++++ .+..+.+|...|.+++|+|+ +.+|++++.||+|++||+.+++++.+..
T Consensus 222 ~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~sp~----~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 287 (321)
T 3ow8_A 222 VTASDDGYIKIYDVQHAN---LAGTLSGHASWVLNVAFCPD----DTHFVSSSSDKSVKVWDVGTRTCVHTFF 287 (321)
T ss_dssp EEECTTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEcCCCeEEEEECCCcc---eeEEEcCCCCceEEEEECCC----CCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence 999999999999999877 56678899999999999999 9999999999999999999988776553
No 34
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-41 Score=282.34 Aligned_cols=287 Identities=17% Similarity=0.240 Sum_probs=232.3
Q ss_pred eeeCccCc--eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEecc-CceeeEEEEEe--CCEEEEecCCCcEEEEEccc
Q 018591 11 VLSGHVGS--VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGH-GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR 85 (353)
Q Consensus 11 ~l~~h~~~--v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~ 85 (353)
...+|.+. +.+++|+++.+++++.||.|++||+.+++....+.. |...|.+++|+ +++|++++.||.|++||+++
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 33467655 556778888889999999999999999998887765 78999999998 78999999999999999987
Q ss_pred CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcC-Cceeeeec
Q 018591 86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVA-DLKCLESI 164 (353)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~ 164 (353)
++ .+ ..+.+|...|.++.|+++.+++++.||.|++||++ ....+..+
T Consensus 166 ~~-----~~---------------------------~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 166 QT-----KL---------------------------RTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp CC-----EE---------------------------EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred Ce-----EE---------------------------EEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEE
Confidence 65 22 22237999999999999999999999999999998 56678888
Q ss_pred cccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEeec--CCCcEE
Q 018591 165 KAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYGGG--SDGFVM 239 (353)
Q Consensus 165 ~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~ 239 (353)
.+|...|.+++|++ ..+++++.|+.|++||+++.+ ....+..|...+ .+++|+|++. ++++++ .|+.|+
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~~~v-~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-----PKFTKTNHNAAV-KAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-----EEEEECCCSSCC-CEEEECTTSTTEEEEECCTTTCEEE
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-----ccEEecCCcceE-EEEEECCCCCCEEEEecCCCCCEEE
Confidence 89999999999943 389999999999999999876 666677777765 9999999765 555544 799999
Q ss_pred EeeccccccceeeeeeccccceeEEEEEE--cCcEEEE--ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCS--GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA 315 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 315 (353)
+||+.++. ....+. +...+.++.+ +++++++ |+.||.|++||+.+++. .....+.+|...|.+++|+|+
T Consensus 288 i~d~~~~~----~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~d- 360 (401)
T 4aez_A 288 FWNAATGA----RVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPD- 360 (401)
T ss_dssp EEETTTCC----EEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTT-
T ss_pred EEECCCCC----EEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCC-
Confidence 99999873 333332 3455666666 5888888 55899999999988542 244557789999999999999
Q ss_pred CCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 316 VGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 316 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
+.+|++++.||.|++|++.+++.+...
T Consensus 361 ---g~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 361 ---GRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp ---SSEEEEECTTSEEEEEECCC-------
T ss_pred ---CCEEEEEeCCCcEEEEECCCCcccccc
Confidence 999999999999999999998877654
No 35
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-41 Score=282.49 Aligned_cols=289 Identities=12% Similarity=0.164 Sum_probs=227.7
Q ss_pred eeeCccCceEEEEEC------CcEEEEEeCCCcEEEEeCCCceeeEEecc-----CceeeEEEEEeC------CEEEEec
Q 018591 11 VLSGHVGSVSSLALC------GEFILSASQGKDIIVWQQPDLRMFTKFGH-----GDGSVKAVVTVG------NKVFTAH 73 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~------~~l~s~~ 73 (353)
...+|.++|++++|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+. .+|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 344899999999997 34677777778999999998887776654 457899999982 3899999
Q ss_pred CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcE
Q 018591 74 QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTL 150 (353)
Q Consensus 74 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v 150 (353)
.||.|++||+++++ .+ ..+.+|...|.+++|+| .+|++++.||.|
T Consensus 93 ~dg~i~v~d~~~~~-----~~---------------------------~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 93 SRGIIRIINPITMQ-----CI---------------------------KHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp TTCEEEEECTTTCC-----EE---------------------------EEEESCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CCCEEEEEEchhce-----Ee---------------------------eeecCCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999998765 21 22237999999999987 789999999999
Q ss_pred EEEEcCCceeeeec---cccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccc----------------------
Q 018591 151 KVWRVADLKCLESI---KAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCH---------------------- 203 (353)
Q Consensus 151 ~iwd~~~~~~~~~~---~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~---------------------- 203 (353)
++||+++++.+..+ ..|...|.+++|++ ..+++++.||.|++||+++++....
T Consensus 141 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T 3k26_A 141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH 220 (366)
T ss_dssp EEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred EEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence 99999999988887 78999999999943 4899999999999999987652100
Q ss_pred -cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc----------eeeeeeccccceeEEE--EEEc-
Q 018591 204 -SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR----------WKLACETKAHEMAVLC--VCLV- 269 (353)
Q Consensus 204 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~--~~~~- 269 (353)
........|...+ .+++|+ ++++++++.|+.|++||+...... ......+..|...+.+ ++++
T Consensus 221 ~~~~~~~~~~~~~v-~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 297 (366)
T 3k26_A 221 FPDFSTRDIHRNYV-DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 297 (366)
T ss_dssp CCSEEECSSCSSCC-CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT
T ss_pred cCccccccCCcceE-EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC
Confidence 0011222365555 999998 679999999999999999876331 1234445555555544 4556
Q ss_pred -CcEEEEecCCCeEEEEecCCCcceE-EeccccCC--CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 270 -GEFLCSGSADKSIGIWKREAFGKLC-RVGAITGH--EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 270 -~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~h--~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
+++|++|+.||.|++||+.+++... ....+.+| ...|++++|+|+ +++|++++.||.|++||+.+
T Consensus 298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD----SSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT----SSEEEEEETTSEEEEEEC--
T ss_pred CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC----CCeEEEEeCCCEEEEEEecC
Confidence 8999999999999999999876332 33356666 789999999999 99999999999999999863
No 36
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2e-41 Score=285.28 Aligned_cols=302 Identities=17% Similarity=0.234 Sum_probs=234.0
Q ss_pred CCCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEec-------------cCceeeEEEEEe--
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFG-------------HGDGSVKAVVTV-- 65 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~-- 65 (353)
...+....+.+|.++|++++|+ +++|++|+.||.|++||+.+++....+. +|...|.+++|+
T Consensus 31 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 31 ELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp EECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred ccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence 3456778899999999999995 6899999999999999998876554442 589999999997
Q ss_pred -CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-----C
Q 018591 66 -GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-----G 139 (353)
Q Consensus 66 -~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~ 139 (353)
+.+|++++.||.|++||++++. ....+ .+...+.++.+.+ .
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 157 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQ-----TADVF----------------------------NFEETVYSHHMSPVSTKHC 157 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTE-----EEEEE----------------------------ECSSCEEEEEECSSCSSCC
T ss_pred CCcEEEEEeCCCeEEEeeCCCCc-----cceec----------------------------cCCCceeeeEeecCCCCCc
Confidence 5689999999999999998765 11111 4677888999987 3
Q ss_pred eEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCccc-----------ccc
Q 018591 140 LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHC-----------HSL 205 (353)
Q Consensus 140 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~-----------~~~ 205 (353)
++++++.||.|++||+++++.+..+..|...|.+++|.++ .+++++.||.|++||++...... ...
T Consensus 158 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceee
Confidence 8999999999999999999999999999999999999443 58899999999999998765110 011
Q ss_pred eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc--ceeEEEEEE-cCcEEEEecCCCeE
Q 018591 206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH--EMAVLCVCL-VGEFLCSGSADKSI 282 (353)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~-~~~~l~~~~~dg~i 282 (353)
......|...+ .+++|+|++++|++++.||.|++||+.++............. ......... .+..+++++.++.|
T Consensus 238 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 238 ESANTAHNGKV-NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp TTSSCSCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred ccccccccCce-eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE
Confidence 11224555555 999999999999999999999999999874332221111111 111122222 25677777889999
Q ss_pred EEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 283 GIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 283 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
++||+.+++ .+..+.+|...|++++|+|+ +++|++++.||.|++|++.+.+.+...+
T Consensus 317 ~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 317 AVYTVYSGE---QITMLKGHYKTVDCCVFQSN----FQELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp EEEETTTCC---EEEEECCCSSCEEEEEEETT----TTEEEEEETTSCEEEEEECC--------
T ss_pred EEEECcCCc---ceeeeccCCCeEEEEEEcCC----CCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 999999887 67778899999999999999 9999999999999999999988776443
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=281.67 Aligned_cols=290 Identities=16% Similarity=0.141 Sum_probs=230.3
Q ss_pred eeeeCccCceEEEEEC--C-cEEEEEeC---CCcEEEEeCCCceeeEEe-ccCceeeEEEEEe-----CCEEEEecCCCc
Q 018591 10 AVLSGHVGSVSSLALC--G-EFILSASQ---GKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV-----GNKVFTAHQDSR 77 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~--~-~~l~s~~~---dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~-----~~~l~s~~~dg~ 77 (353)
..+++|.++|++++|+ + .++++|+. ||.|++||+.+++..... ..|...|.+++|+ +++|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4567899999999997 4 46667776 999999999988776543 3678899999997 288999999999
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE------eC--CeEEEecCCCc
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV------YN--GLIYSGSWDKT 149 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~--~~l~~~~~dg~ 149 (353)
|++||++++.. ....+.+|...|.++.| ++ +.|++++.||.
T Consensus 92 i~iwd~~~~~~-------------------------------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 92 LHIWNLEAPEM-------------------------------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEEECTTSCSS-------------------------------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred EEEEeCCCCCc-------------------------------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 99999987641 12223379999999966 44 69999999999
Q ss_pred EEEEEcCCce-eeeeccccCc----ceEEEE----E--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591 150 LKVWRVADLK-CLESIKAHDD----AVNGLV----A--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN 218 (353)
Q Consensus 150 v~iwd~~~~~-~~~~~~~~~~----~v~~i~----~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (353)
|++||+++++ ++..+..|.+ .+.+++ | .+..+++++.||.|++||+++++ . .....+...+ .
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~-~~~~~~~~~v-~ 213 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-----L-RWETNIKNGV-C 213 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----E-EEEEECSSCE-E
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----e-eeecCCCCce-E
Confidence 9999999876 6777765544 889998 4 33489999999999999999886 3 2334455554 9
Q ss_pred EEEEcC---CCCeEEeecCCCcEEEeeccccccceee-eeeccccceeEEEEEEc--Cc-EEEEecCCCeEEEEecCCCc
Q 018591 219 SVVVSD---DGKWVYGGGSDGFVMGWEGNVEIVRWKL-ACETKAHEMAVLCVCLV--GE-FLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 219 ~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~iw~~~~~~ 291 (353)
+++|+| ++.++++++.||.|++||++........ ......|...+.++.++ ++ +|++++.||.|++||++.+.
T Consensus 214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 999999 9999999999999999999887433222 11334788888888775 55 89999999999999998654
Q ss_pred ce----------------EEeccccCCCcCeEEEEeecCCCCCCeEEE-EccCCCeEEEEEcCCCCC
Q 018591 292 KL----------------CRVGAITGHEGPVKCLQASPNAVGGGFLLY-SGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 292 ~~----------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~ 341 (353)
.. ..+..+.+|..+|++++|+|+ +++|+ +++.||.|++|++.+.+.
T Consensus 294 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 294 QRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD----KRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS----STTEEEEEETTSEEEEEEECC---
T ss_pred ccccccCCCCccccccccceeeccccCCCCeeEEEEcCC----CCeEEEEecCCCcEEEEECCCccc
Confidence 32 467778899999999999999 88888 899999999999987654
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=286.98 Aligned_cols=277 Identities=15% Similarity=0.189 Sum_probs=233.5
Q ss_pred eCccCceEEEEEC--Cc-EEEEEeCCCcEEEEeC----CCce------eeEEecc----------CceeeEEEEEe--CC
Q 018591 13 SGHVGSVSSLALC--GE-FILSASQGKDIIVWQQ----PDLR------MFTKFGH----------GDGSVKAVVTV--GN 67 (353)
Q Consensus 13 ~~h~~~v~~~~~~--~~-~l~s~~~dg~v~vwd~----~~~~------~~~~~~~----------~~~~v~~~~~~--~~ 67 (353)
..|.++|++++|+ ++ +|++|+.||.|++||+ .+++ ....+.. |...|.+++|+ ++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 3466999999997 77 9999999999999999 8888 4555555 78899999998 78
Q ss_pred EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec
Q 018591 68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS 145 (353)
Q Consensus 68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~ 145 (353)
+|++++.||.|++||.. +. . ...+.+|...|.+++|+| .+|++++
T Consensus 122 ~l~~~~~dg~i~i~~~~-~~-----~---------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKT-GA-----L---------------------------LNVLNFHRAPIVSVKWNKDGTHIISMD 168 (425)
T ss_dssp EEEEEETTSCEEEEETT-SC-----E---------------------------EEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEeCCCeEEEEeCC-CC-----e---------------------------eeeccCCCccEEEEEECCCCCEEEEEe
Confidence 99999999999999933 22 1 122237899999999998 7899999
Q ss_pred CCCcEEEEEcCCceeeeeccccCcc---------------eEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeee
Q 018591 146 WDKTLKVWRVADLKCLESIKAHDDA---------------VNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGIL 209 (353)
Q Consensus 146 ~dg~v~iwd~~~~~~~~~~~~~~~~---------------v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 209 (353)
.|+.|++||+.+++.+..+..+... +.++.| +++.+++++.+|.|++||+++++ ....+
T Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-----~~~~~ 243 (425)
T 1r5m_A 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-----PTGKL 243 (425)
T ss_dssp TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-----CSEEE
T ss_pred cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-----eeeee
Confidence 9999999999999999888877766 889999 66799999999999999999886 66677
Q ss_pred eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEec
Q 018591 210 EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~ 287 (353)
..|...+ .+++|+|++++|++++.|+.|++||++.+ .....+..|...+.++.++ + ++++++.|+.|++||+
T Consensus 244 ~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 244 IGHHGPI-SVLEFNDTNKLLLSASDDGTLRIWHGGNG----NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp CCCSSCE-EEEEEETTTTEEEEEETTSCEEEECSSSB----SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred ccCCCce-EEEEECCCCCEEEEEcCCCEEEEEECCCC----ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence 7777765 99999999999999999999999999987 4455556778888888875 5 9999999999999999
Q ss_pred CCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 288 EAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 288 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
.+++ .+..+..|...|.+++|+|+ +++|++++.||.|++|++.+++
T Consensus 318 ~~~~---~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 318 KQNT---LLALSIVDGVPIFAGRISQD----GQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TTTE---EEEEEECTTCCEEEEEECTT----SSEEEEEETTSCEEEEECHHHH
T ss_pred CCCc---EeEecccCCccEEEEEEcCC----CCEEEEEECCCeEEEEECCCCc
Confidence 9877 56667789999999999999 9999999999999999998766
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-40 Score=272.85 Aligned_cols=277 Identities=16% Similarity=0.262 Sum_probs=231.6
Q ss_pred eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCcee---eEEec--cCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591 10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRM---FTKFG--HGDGSVKAVVTV--GNKVFTAHQDSRIRV 80 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~---~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~~ 80 (353)
....+|.++|++++|+ +++|++++ ||.|++||+.+++. +..+. .|...|.+++|+ +++|++++.||.|++
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 3445799999999996 88999998 99999999987653 33333 788999999998 789999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~ 158 (353)
||++++.... ...+..|...|.+++|++ +++++++.||.|++||++++
T Consensus 124 ~d~~~~~~~~------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 173 (337)
T 1gxr_A 124 WDLAAPTPRI------------------------------KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173 (337)
T ss_dssp EECCCC--EE------------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EECCCCCcce------------------------------eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 9998765211 112236888999999998 78999999999999999999
Q ss_pred eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
+.+..+..|...+.+++|++ ..+++++.||.|++||+++++ ....+. +... +.+++|+|+++++++++.++
T Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~~~~-~~~~-v~~~~~s~~~~~l~~~~~~~ 246 (337)
T 1gxr_A 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----QLQQHD-FTSQ-IFSLGYCPTGEWLAVGMESS 246 (337)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEE-CSSC-EEEEEECTTSSEEEEEETTS
T ss_pred ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-----eEeeec-CCCc-eEEEEECCCCCEEEEEcCCC
Confidence 99999999999999999943 389999999999999999886 344433 3344 49999999999999999999
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
.|++||++... ......|...+.++.++ +++|++++.||.|++||+.+++.. . ...|...|.+++|+|+
T Consensus 247 ~i~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~---~-~~~~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 247 NVEVLHVNKPD-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI---F-QSKESSSVLSCDISVD 317 (337)
T ss_dssp CEEEEETTSSC-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---E-EEECSSCEEEEEECTT
T ss_pred cEEEEECCCCC-----eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE---E-EecCCCcEEEEEECCC
Confidence 99999998873 23456677888888775 889999999999999999987743 2 2457889999999999
Q ss_pred CCCCCeEEEEccCCCeEEEEEcC
Q 018591 315 AVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
+++|++++.||.|++|++.
T Consensus 318 ----~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 318 ----DKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ----SCEEEEEETTSCEEEEEEE
T ss_pred ----CCEEEEecCCCeEEEEEEe
Confidence 9999999999999999973
No 40
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.2e-40 Score=279.57 Aligned_cols=281 Identities=19% Similarity=0.294 Sum_probs=224.1
Q ss_pred ceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEec--cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591 18 SVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFG--HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR 92 (353)
Q Consensus 18 ~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~ 92 (353)
.++.|+|+ +++||+|. |++|+|||..+++....+. .|...|++++|+ +++|++|+.||.|++||+++++
T Consensus 107 y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~----- 180 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----- 180 (420)
T ss_dssp TCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----
T ss_pred cceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----
Confidence 35678997 67777765 8999999999999887664 677889999998 8899999999999999998875
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCC-ceeeeeccccCcce
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVAD-LKCLESIKAHDDAV 171 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v 171 (353)
.+ ..+.+|...+.++.+++..+++|+.|+.+++||... ...+..+.+|...+
T Consensus 181 ~~---------------------------~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~ 233 (420)
T 4gga_A 181 RL---------------------------RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 233 (420)
T ss_dssp EE---------------------------EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EE---------------------------EEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccce
Confidence 22 223379999999999999999999999999999876 44567788999999
Q ss_pred EEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEe--ecCCCcEEEeecccc
Q 018591 172 NGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYG--GGSDGFVMGWEGNVE 246 (353)
Q Consensus 172 ~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~ 246 (353)
..+.+. +..+++++.|+.+++||...++.. .........|...+ .+++|+|++. .+++ |+.|+.|++||+.++
T Consensus 234 ~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~-~~~~~~~~~~~~~V-~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQTFTQHQGAV-KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESSCCSSC-SCCSEEECCCSSCE-EEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred eeeeecCCCCeeeeeeccccceEEeecccccc-ceeeeeecccCCce-eeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence 999993 349999999999999999877521 12334555666655 9999999765 4443 568999999999988
Q ss_pred ccceeeeeeccccceeEEEEEE--cCcEEEEec--CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591 247 IVRWKLACETKAHEMAVLCVCL--VGEFLCSGS--ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL 322 (353)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l 322 (353)
. ....+..+. .+.++.+ +++.+++++ .|+.|++||+.+++ ++..+.+|.+.|++++|+|+ +++|
T Consensus 312 ~----~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~---~v~~l~gH~~~V~~l~~spd----g~~l 379 (420)
T 4gga_A 312 A----CLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPD----GATV 379 (420)
T ss_dssp E----EEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTT----SSCE
T ss_pred c----cceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCC----CCEE
Confidence 3 333333333 3444444 567666543 79999999999887 67788999999999999999 9999
Q ss_pred EEccCCCeEEEEEcCCCCCcccc
Q 018591 323 YSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 323 ~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
+||+.||+|++||+.+..+....
T Consensus 380 ~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 380 ASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp EEEETTTEEEEECCSCSSCC---
T ss_pred EEEecCCeEEEEECCCCCccchh
Confidence 99999999999999876555443
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-41 Score=287.02 Aligned_cols=301 Identities=16% Similarity=0.214 Sum_probs=227.8
Q ss_pred CCCceeeee-eCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC---ce---eeEEeccCceeeEEEEEe--CCEEEE
Q 018591 4 KSHRSLAVL-SGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD---LR---MFTKFGHGDGSVKAVVTV--GNKVFT 71 (353)
Q Consensus 4 ~~~~~~~~l-~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~---~~---~~~~~~~~~~~v~~~~~~--~~~l~s 71 (353)
++++++..+ .+|.++|++++|+ +++|++|+.||+|++||+.+ +. ....+ .|...|.+++|+ +++|++
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 467888899 8999999999995 57999999999999999876 33 23333 488999999998 789999
Q ss_pred ecCCCcEEEEEcc---cCccceeEEeeccccccceeeeecccceeEeecccceeeeee--cCCceEEEEEe--C--CeEE
Q 018591 72 AHQDSRIRVWKVS---RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE--HADSISCLTVY--N--GLIY 142 (353)
Q Consensus 72 ~~~dg~i~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~--~~l~ 142 (353)
++.||.|++||++ .+.. ....... .+ ....+.. +...+.++.+. + .+++
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~-----~~~~~~~--~i---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESE-----VKFLNCE--CI---------------RKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp EETTSEEEEEEEEEEEETTE-----EEEEEEE--EE---------------EEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred EeCCCEEEEEEeccccCCce-----eeccccc--ee---------------EEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 9999999999996 3321 1110000 00 0000011 66778888854 4 7999
Q ss_pred EecCCCcEEEEEcCCceeeeeccc--cCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeee-ccCCcee
Q 018591 143 SGSWDKTLKVWRVADLKCLESIKA--HDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSL 217 (353)
Q Consensus 143 ~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v 217 (353)
+|+.||.|++||+++++++..+.. |...|++++|++ ..+++++.||.|++||+++++ +...+. .|.. .|
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~-~v 260 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-----LIRSWSFGDHA-PI 260 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-----EEEEEBCTTCE-EE
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-----EEEEEecCCCC-ce
Confidence 999999999999999999999987 889999999943 389999999999999999876 555554 4444 45
Q ss_pred eEEEEcC----CCCeEEeecCCCcEEEeeccccccceeeee--------------------eccc--cceeEEEEEEc-C
Q 018591 218 NSVVVSD----DGKWVYGGGSDGFVMGWEGNVEIVRWKLAC--------------------ETKA--HEMAVLCVCLV-G 270 (353)
Q Consensus 218 ~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------~~~~--~~~~v~~~~~~-~ 270 (353)
.+++++| ++.+|++++.||.|++||++++.....+.. .+.+ |...+.+++++ +
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~ 340 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSND 340 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETT
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCc
Confidence 9996654 678999999999999999987743222211 0111 55567666665 6
Q ss_pred cEEEEecCCCeEEEEecCCCcceEEecc----------------------------------ccCCCcCeEEEEeecCCC
Q 018591 271 EFLCSGSADKSIGIWKREAFGKLCRVGA----------------------------------ITGHEGPVKCLQASPNAV 316 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~----------------------------------~~~h~~~v~~~~~~~~~~ 316 (353)
++|++|+.||.|++||+.+++....+.. ...|...|++++|+++.+
T Consensus 341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~ 420 (437)
T 3gre_A 341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE 420 (437)
T ss_dssp EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence 7999999999999999998774433321 123899999999998732
Q ss_pred CCCeEEEEccCCCeEEEEE
Q 018591 317 GGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 317 ~~~~~l~s~~~dg~i~iw~ 335 (353)
+.+|++|+.||.|+||+
T Consensus 421 --~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 421 --TPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --SEEEEEEETTSCEEEEC
T ss_pred --ceEEEEEcCCceEEEeC
Confidence 67999999999999995
No 42
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-41 Score=283.08 Aligned_cols=290 Identities=12% Similarity=0.148 Sum_probs=236.2
Q ss_pred ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccce
Q 018591 15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENV 90 (353)
Q Consensus 15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~ 90 (353)
|.+.|++++|+ +++|++|+.||.|++|| .+++.+..+..|...|.+++|+ +++|++++.||.|++||+.++.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--- 182 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT--- 182 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE---
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc---
Confidence 78899999996 88999999999999999 7888899999999999999998 7899999999999999998765
Q ss_pred eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591 91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDD 169 (353)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 169 (353)
.+..+......... ............+.++.|++ +.+++++.||.|++||+++++.+..+..|..
T Consensus 183 --~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 248 (425)
T 1r5m_A 183 --VMQHFELKETGGSS------------INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG 248 (425)
T ss_dssp --EEEEECCC---------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred --EEEEeeccccCccc------------eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence 22222111000000 00000112233388899988 8999999999999999999999999999999
Q ss_pred ceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591 170 AVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI 247 (353)
Q Consensus 170 ~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 247 (353)
.|.+++|++ ..+++++.|+.|++||+++++ ....+..|...+ .+++|+|++ ++++++.|+.|++||++++
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~i-~~~~~~~~~-~l~~~~~d~~i~i~d~~~~- 320 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-----SQNCFYGHSQSI-VSASWVGDD-KVISCSMDGSVRLWSLKQN- 320 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBS-----CSEEECCCSSCE-EEEEEETTT-EEEEEETTSEEEEEETTTT-
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----cceEecCCCccE-EEEEECCCC-EEEEEeCCCcEEEEECCCC-
Confidence 999999943 389999999999999999876 666777777765 999999999 9999999999999999887
Q ss_pred cceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcc-----------------eEEeccccCCCc--Ce
Q 018591 248 VRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGK-----------------LCRVGAITGHEG--PV 306 (353)
Q Consensus 248 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~-----------------~~~~~~~~~h~~--~v 306 (353)
.....+..|...+.++.++ +++|++++.||.|++||+.+++. ...+..+.+|.. .|
T Consensus 321 ---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 397 (425)
T 1r5m_A 321 ---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI 397 (425)
T ss_dssp ---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred ---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence 4555666777788777765 88999999999999999987651 114566788876 99
Q ss_pred EEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 307 KCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 307 ~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
++++|+|+ +++|++++.||.|++|+++
T Consensus 398 ~~~~~s~~----~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 398 FDLSWNCA----GNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEECTT----SSEEEEEESSSCCEEEECC
T ss_pred EEEEccCC----CceEEEEecCceEEEEeec
Confidence 99999999 9999999999999999986
No 43
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=272.43 Aligned_cols=236 Identities=16% Similarity=0.170 Sum_probs=197.2
Q ss_pred eCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEE----eccCceeeEEEEEe--CCEEEEecCCCcEEEEEccc
Q 018591 13 SGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTK----FGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR 85 (353)
Q Consensus 13 ~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~----~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~ 85 (353)
..|..+|++++|+ .+.|++|+.||+|+|||+.+++.+.. ..+|...|.+++|+ +++|++|+.||+|++||+++
T Consensus 79 ~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 79 VQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 3467789999997 67899999999999999998876544 35799999999998 88999999999999999988
Q ss_pred CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeee
Q 018591 86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLE 162 (353)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~ 162 (353)
++ .+ ..+.+|...|.+++|++ .++++++.|+.|++||++++++..
T Consensus 159 ~~-----~~---------------------------~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 206 (344)
T 4gqb_B 159 QV-----VL---------------------------SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS 206 (344)
T ss_dssp TE-----EE---------------------------EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE
T ss_pred Cc-----EE---------------------------EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee
Confidence 75 22 23348999999999998 478999999999999999998887
Q ss_pred ecc--ccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-CeEEeecCCC
Q 018591 163 SIK--AHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KWVYGGGSDG 236 (353)
Q Consensus 163 ~~~--~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 236 (353)
.+. .+...+.+++|.+ .++++|+.||.|++||+++++ +...+.+|...+ .+++|+|++ ++|++|+.|+
T Consensus 207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-----~~~~~~~h~~~v-~~v~fsp~g~~~lasgs~D~ 280 (344)
T 4gqb_B 207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-----CVLSSAVHSQCV-TGLVFSPHSVPFLASLSEDC 280 (344)
T ss_dssp ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------CCEEEECCSSCE-EEEEECSSSSCCEEEEETTS
T ss_pred eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-----EEEEEcCCCCCE-EEEEEccCCCeEEEEEeCCC
Confidence 774 4556789999943 278899999999999999887 778888998876 999999997 5799999999
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEEc--C-cEEEEecCCCeEEEEecCCCc
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G-EFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~iw~~~~~~ 291 (353)
.|++||+++++ + ..+.+|...|.+++|+ + .+|++++.|++|++|++.+..
T Consensus 281 ~i~vwd~~~~~----~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 281 SLAVLDSSLSE----L-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CEEEECTTCCE----E-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred eEEEEECCCCc----E-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99999998872 2 3467899999999885 4 467899999999999998743
No 44
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.6e-40 Score=271.78 Aligned_cols=288 Identities=11% Similarity=0.085 Sum_probs=216.4
Q ss_pred CceEEEEEC--CcEEEEEeCCC-------cEEEEeCCCcee----------eEEeccCceeeEEEEEeCCEEEEec----
Q 018591 17 GSVSSLALC--GEFILSASQGK-------DIIVWQQPDLRM----------FTKFGHGDGSVKAVVTVGNKVFTAH---- 73 (353)
Q Consensus 17 ~~v~~~~~~--~~~l~s~~~dg-------~v~vwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~l~s~~---- 73 (353)
-||++++|+ +++|++|+.|. .|++|++..... ...+..|...+.+++++++.++++.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~ 94 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS 94 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence 589999995 88999987643 599999865431 1345678889999999988887764
Q ss_pred -------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE--
Q 018591 74 -------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-- 142 (353)
Q Consensus 74 -------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-- 142 (353)
.|+.+++|+++....... ....... .....+...+.+++|+| ++++
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~-~~~~~~~----------------------~~~~~~~~~~~~v~fSpDg~~la~a 151 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLE-FLTSVDF----------------------DASTNADDYTKLVYISREGTVAAIA 151 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEE-EEEEECS----------------------SCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEE-Eeeeece----------------------eecCCcccCEEEEEEcCCCCEEEEE
Confidence 567899999876543211 1111000 00114556788999999 5554
Q ss_pred EecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591 143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV 220 (353)
Q Consensus 143 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (353)
+++.|+.|++||+++++++..+. |...|.+++|++ + ++++++ ++.+++|+..+++. ........|... +.++
T Consensus 152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~---~~~~~~~~~~~~-v~~v 225 (365)
T 4h5i_A 152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSC---IARKTDFDKNWS-LSKI 225 (365)
T ss_dssp ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCE---EEEECCCCTTEE-EEEE
T ss_pred ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcc---eeeeecCCCCCC-EEEE
Confidence 45579999999999999998885 778899999944 3 666666 55677777766651 111233345444 5999
Q ss_pred EEcCCCCeEEeecCCC----cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceE
Q 018591 221 VVSDDGKWVYGGGSDG----FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLC 294 (353)
Q Consensus 221 ~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~ 294 (353)
+|+|+++++++++.|+ .+++|++............+.+|...|.++++ +|++||+|+.|++|+|||+++++
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~--- 302 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS--- 302 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE---
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc---
Confidence 9999999999998887 68888887765444445567778888887766 58999999999999999999887
Q ss_pred Eecc-ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 295 RVGA-ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 295 ~~~~-~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
.+.. +.+|..+|++++|+|| +++|+|||.|++|+||++++..
T Consensus 303 ~~~~~~~gH~~~V~~v~fSpd----g~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISPD----STYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEEETTSSSSCEEEEEECTT----SCEEEEEETTSEEEEEECCTTT
T ss_pred EEEEecCcccCCEEEEEECCC----CCEEEEEeCCCeEEEEEcCCCC
Confidence 5554 5789999999999999 9999999999999999997553
No 45
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9e-40 Score=265.98 Aligned_cols=277 Identities=18% Similarity=0.285 Sum_probs=218.7
Q ss_pred eEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEec--cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEE
Q 018591 19 VSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFG--HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 19 v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 93 (353)
.++|+|+ +++||+| .|++|+|||+.+++++..+. +|...|.+++|+ +++|++|+.||+|++|++++++ .
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----~ 101 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----R 101 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----E
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----e
Confidence 5789998 6677665 58999999999999888764 678889999998 8899999999999999998876 2
Q ss_pred eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCc-eeeeeccccCcceE
Q 018591 94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADL-KCLESIKAHDDAVN 172 (353)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~ 172 (353)
+ ..+.+|...+.++.+.+..+++++.++.+++|+.... ..+..+.+|...+.
T Consensus 102 ~---------------------------~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 102 L---------------------------RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154 (318)
T ss_dssp E---------------------------EEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred E---------------------------EEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence 2 2233799999999999999999999999999998765 45677788999999
Q ss_pred EEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE---EeecCCCcEEEeeccccc
Q 018591 173 GLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV---YGGGSDGFVMGWEGNVEI 247 (353)
Q Consensus 173 ~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~ 247 (353)
.+.+ .+..+++++.|+.|++||+++++.. .........+...+ ..++++|++..+ ++++.++.|++||.....
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~ 232 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQTFTQHQGAV-KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 232 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTB-SCCSEEECCCCSCE-EEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCccc-ccceeeecccCCce-EEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence 9999 4448999999999999999877522 12233344444544 899999976543 467889999999998863
Q ss_pred cceeeeeeccccceeEEEEEEcCcEEEE--ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 248 VRWKLACETKAHEMAVLCVCLVGEFLCS--GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 248 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
... ...........++.++++.+++ |+.|+.|++||+++++ .+..+.+|.+.|++++|+|+ +++|+||
T Consensus 233 ~~~---~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---~~~~l~gH~~~V~~l~~spd----g~~l~S~ 302 (318)
T 4ggc_A 233 CLS---AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPD----GATVASA 302 (318)
T ss_dssp EEE---EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTT----SSCEEEE
T ss_pred ccc---cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCC----CCEEEEE
Confidence 221 1112222333444455666654 4479999999999887 67788999999999999999 9999999
Q ss_pred cCCCeEEEEEcCCCC
Q 018591 326 SLDKSLRVWWVSKQS 340 (353)
Q Consensus 326 ~~dg~i~iw~~~~~~ 340 (353)
+.||+|+|||+.+..
T Consensus 303 s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 303 AADETLRLWRCFELD 317 (318)
T ss_dssp ETTTEEEEECCSCCC
T ss_pred ecCCeEEEEECCCCC
Confidence 999999999997654
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-41 Score=289.55 Aligned_cols=301 Identities=12% Similarity=0.068 Sum_probs=221.8
Q ss_pred ceeeeeeCccCceEEEEEC--C---------cEEEE-------------------EeCCCcEEEEeCCCceee----EEe
Q 018591 7 RSLAVLSGHVGSVSSLALC--G---------EFILS-------------------ASQGKDIIVWQQPDLRMF----TKF 52 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~---------~~l~s-------------------~~~dg~v~vwd~~~~~~~----~~~ 52 (353)
+...++. +.+.|++|+|+ + ++||+ ++.|++|+|||+.+++.. ..+
T Consensus 125 r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l 203 (524)
T 2j04_B 125 RRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI 203 (524)
T ss_dssp SCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE
T ss_pred cceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE
Confidence 3344444 57788888885 3 56666 557889999999877642 446
Q ss_pred ccCceeeEEEEEeC--------CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591 53 GHGDGSVKAVVTVG--------NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124 (353)
Q Consensus 53 ~~~~~~v~~~~~~~--------~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (353)
.+|.+.|.+++|+. .+|++++.||+|++||+..+........ ....+...+
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~---------------------~~~~p~~~l 262 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK---------------------MCEKPSLTL 262 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE---------------------CCCSCSEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce---------------------eecCceEEE
Confidence 77888999999983 5899999999999999976542100000 001122344
Q ss_pred eecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCce-eeeeccccCcceEEE--EEeC---CeEEEEcCCCcEEEEeCCC
Q 018591 125 IEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLK-CLESIKAHDDAVNGL--VASK---GIVYSASADGKIKAWGKEL 197 (353)
Q Consensus 125 ~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i--~~~~---~~l~~~~~dg~i~iwd~~~ 197 (353)
.+|...|++++|++ +.|++|+.||+|++||++++. +...+.+|...|.++ .+++ .+|++++.|++|++||+++
T Consensus 263 ~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~ 342 (524)
T 2j04_B 263 SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342 (524)
T ss_dssp CCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred EcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence 58999999999988 899999999999999998764 455678999999999 4543 4789999999999999988
Q ss_pred CCcccccceeeeeccCC-ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEE
Q 018591 198 GKSHCHSLKGILEGHKD-VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLC 274 (353)
Q Consensus 198 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 274 (353)
++ ....+.+|.. ..+.+++|+|+++.+++++.|+.|++||++.. .....+.+|...|.+++++ +++|+
T Consensus 343 ~~-----~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~----~~~~~l~gH~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 343 IA-----TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA----FAVHPLVSRETTITAIGVSRLHPMVL 413 (524)
T ss_dssp HH-----HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT----TCCEEEEECSSCEEEEECCSSCCBCE
T ss_pred CC-----cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc----ccceeeecCCCceEEEEeCCCCCeEE
Confidence 76 4445555543 22488999999999999999999999999887 3444566788899888875 88999
Q ss_pred EecCCCeEEEEecCCC-----c---------c---------------------------eEEeccccCCCcCeEEEEeec
Q 018591 275 SGSADKSIGIWKREAF-----G---------K---------------------------LCRVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 275 ~~~~dg~i~iw~~~~~-----~---------~---------------------------~~~~~~~~~h~~~v~~~~~~~ 313 (353)
+|+.||+|++||+... + . ...+..+.+|..+|.+++|+|
T Consensus 414 Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 414 AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp EEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred EEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence 9999999999985321 0 0 012334567889999999999
Q ss_pred CCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 314 NAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 314 ~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
+.+. +..+++|+.||.|+||++.-.
T Consensus 494 ~~~~-~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 494 TSAG-GKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp STTT-TTEEEEECTTSEEEEEECSCC
T ss_pred CCCc-cHHHHhhccCceEEEEEcccc
Confidence 8211 349999999999999998754
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-41 Score=286.71 Aligned_cols=290 Identities=14% Similarity=0.150 Sum_probs=236.7
Q ss_pred CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC----ceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcc
Q 018591 14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPD----LRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~ 84 (353)
.|...|++++|+ +++|++|+.||.|++||+.+ .+.+..+..|...|.+++|+ +++|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 588999999996 88999999999999999987 45888899999999999997 6789999999999999998
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceee
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCL 161 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~ 161 (353)
+......... . .....+..|...|.+++|++ .++++++.||.|++||+++++.+
T Consensus 145 ~~~~~~~~~~-~----------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 145 KCTESPSNYT-P----------------------LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp TTSSCTTTCC-C----------------------BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred CCcccccccc-c----------------------cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence 7651000000 0 00011126889999999998 58999999999999999999998
Q ss_pred eecccc------CcceEEEEEeC---CeEEEEcCCC---cEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcC-CCC
Q 018591 162 ESIKAH------DDAVNGLVASK---GIVYSASADG---KIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSD-DGK 227 (353)
Q Consensus 162 ~~~~~~------~~~v~~i~~~~---~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~ 227 (353)
..+..+ ...|.+++|++ ..+++++.|+ .|++||+++.. .+...+. +|...+ .+++|+| +++
T Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----~~~~~~~~~~~~~v-~~~~~s~~~~~ 276 (416)
T 2pm9_A 202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----TPLQTLNQGHQKGI-LSLDWCHQDEH 276 (416)
T ss_dssp EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----SCSBCCCSCCSSCE-EEEEECSSCSS
T ss_pred eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----CCcEEeecCccCce-eEEEeCCCCCC
Confidence 888776 78999999943 3799999998 99999999863 1455666 677665 9999999 899
Q ss_pred eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C-cEEEEecCCCeEEEEecCCCcceEEe--------
Q 018591 228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G-EFLCSGSADKSIGIWKREAFGKLCRV-------- 296 (353)
Q Consensus 228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~iw~~~~~~~~~~~-------- 296 (353)
+|++++.||.|++||++++ +....+..|...+.++.++ + .+|++++.||.|++||+.+.+.....
T Consensus 277 ~l~s~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 352 (416)
T 2pm9_A 277 LLLSSGRDNTVLLWNPESA----EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQ 352 (416)
T ss_dssp CEEEEESSSEEEEECSSSC----CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------
T ss_pred eEEEEeCCCCEEEeeCCCC----ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccccc
Confidence 9999999999999999987 5566667788888777775 5 79999999999999999876532111
Q ss_pred ------------------------ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 297 ------------------------GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 297 ------------------------~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
.....|..++.+++|+|+ |++|++++.||.|+||++.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----g~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 353 ESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG----GKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp --------------CCSCCCSSCCCCCSTTCCCSCCCEEETT----TEEECBCTTSSCBCCBCCCCC
T ss_pred CCcccccccccccccccccccccccCCccccCCccceEEeeC----CeEEEEeCCCCeEEEEEeccC
Confidence 011126778889999999 999999999999999999864
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.7e-40 Score=276.06 Aligned_cols=288 Identities=14% Similarity=0.154 Sum_probs=227.0
Q ss_pred CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591 5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV 80 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~ 80 (353)
+++....+.+| ..+....|+ +++|++|+.||.|++||+.+++....+..|...|.+++|+ +++|++++.||.|++
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 165 (420)
T 3vl1_A 87 IRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKI 165 (420)
T ss_dssp SEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEE
Confidence 34444555555 333333554 8899999999999999999999999889999999999998 779999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~ 158 (353)
||+++++. ...+.+|...|.+++|+| .+|++++.||.|++||++++
T Consensus 166 wd~~~~~~--------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 213 (420)
T 3vl1_A 166 WSVKDGSN--------------------------------PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213 (420)
T ss_dssp EETTTCCC--------------------------------CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred EeCCCCcC--------------------------------ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence 99987651 222347999999999998 78999999999999999999
Q ss_pred eeeeeccc---cCcceEEEEE---------------------eC--CeEEEEcCCCcEEEEeCCCCCcccccceeeee-c
Q 018591 159 KCLESIKA---HDDAVNGLVA---------------------SK--GIVYSASADGKIKAWGKELGKSHCHSLKGILE-G 211 (353)
Q Consensus 159 ~~~~~~~~---~~~~v~~i~~---------------------~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~ 211 (353)
+.+..+.. +...+.++++ ++ ..+++++.||.|++||+++++ ....+. .
T Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~ 288 (420)
T 3vl1_A 214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-----QTIQLPSK 288 (420)
T ss_dssp EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC-----EEEEECCT
T ss_pred ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc-----eeEEcccc
Confidence 99888864 4556666655 12 289999999999999999887 344443 4
Q ss_pred cCCceeeEEEEcCCCC-eEEeecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEE-cCcEEEEecCCCeEEEEecC
Q 018591 212 HKDVSLNSVVVSDDGK-WVYGGGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCL-VGEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 212 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~l~~~~~dg~i~iw~~~ 288 (353)
|... +.+++|+|++. +|++++.||.|++||++++.. ....+.. |...+.++.+ ++++|++++.||.|++|++.
T Consensus 289 ~~~~-v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 289 FTCS-CNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp TSSC-EEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred cCCC-ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEecc
Confidence 5544 59999999998 999999999999999988632 2233333 5556666655 58899999999999999998
Q ss_pred CCcceEE------eccccCCCcCeEEEEeecCCCCCCe---EEEEccCCCeEEEEEcCC
Q 018591 289 AFGKLCR------VGAITGHEGPVKCLQASPNAVGGGF---LLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 289 ~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~~---~l~s~~~dg~i~iw~~~~ 338 (353)
..+.+.. ...+.+|.+.|.+++|+|+ +. .|++++.+|.+.+|++++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 365 DPESERPAIEFETPTFLVSNDDAVSQFCYVSD----DESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CTTCCSCEECTTSCEEECCSSCCCCEEEEECC----SSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCCCccceeccCccEEccCCcceEEEEEccC----CCCcceEEEEcCCceEEEEeccC
Confidence 7533211 1234578889999999999 66 666667789999999875
No 49
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-39 Score=267.46 Aligned_cols=254 Identities=16% Similarity=0.216 Sum_probs=215.7
Q ss_pred ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591 46 LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123 (353)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (353)
.+....+.+|.+.|.+++|+ +++|++++.||+|++||+.++. .+. .
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----~~~---------------------------~ 92 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVH---------------------------A 92 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----EEE---------------------------E
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----cce---------------------------E
Confidence 45677889999999999998 7899999999999999998765 222 2
Q ss_pred eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc----eeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCC
Q 018591 124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL----KCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKE 196 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~ 196 (353)
+..|...|.+++|+| +++++|+.|+.|++||+.+. .....+.+|...|.++.| +++.+++++.|++|++||++
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~ 172 (340)
T 1got_B 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172 (340)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred eecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECC
Confidence 236888999999999 89999999999999999765 356677899999999999 66799999999999999999
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEE
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLC 274 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 274 (353)
+++ ....+.+|...+ .+++|+|+++++++|+.|+.|++||++++ .....+.+|...+.++.++ +++|+
T Consensus 173 ~~~-----~~~~~~~h~~~v-~~~~~~~~~~~l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~ 242 (340)
T 1got_B 173 TGQ-----QTTTFTGHTGDV-MSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFA 242 (340)
T ss_dssp TTE-----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCc-----EEEEEcCCCCce-EEEEECCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCCCEEE
Confidence 887 677788888776 99999999999999999999999999987 4556677888888887774 88999
Q ss_pred EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
+|+.||.|++||+++++..... ....+...|++++|+|+ +++|++|+.||.|++||+.+++.+....
T Consensus 243 s~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~----g~~l~~g~~d~~i~vwd~~~~~~~~~~~ 309 (340)
T 1got_B 243 TGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKS----GRLLLAGYDDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTT----SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEE-ccCCcccceEEEEECCC----CCEEEEECCCCeEEEEEcccCcEeeEee
Confidence 9999999999999987633221 12334457999999999 9999999999999999998887665443
No 50
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-39 Score=288.58 Aligned_cols=318 Identities=17% Similarity=0.204 Sum_probs=237.0
Q ss_pred CCCCceeeeeeCccC---ceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEe-c---cCceeeEEEEEe-CCEEEE
Q 018591 3 CKSHRSLAVLSGHVG---SVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKF-G---HGDGSVKAVVTV-GNKVFT 71 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~---~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~-~---~~~~~v~~~~~~-~~~l~s 71 (353)
.++++++..+.+|.. .|++++|+ +++|++++.||.|++||+.+++.+..+ . .|...|.++.|+ +.+|++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 269 (615)
T 1pgu_A 190 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT 269 (615)
T ss_dssp TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred CCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEE
Confidence 356788899999999 99999995 679999999999999999999999999 6 899999999995 889999
Q ss_pred ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEee-------------cccceeee--------------
Q 018591 72 AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT-------------RRHHKRLW-------------- 124 (353)
Q Consensus 72 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-------------- 124 (353)
++.||.|++||+++++..........+...............+.. .......+
T Consensus 270 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 349 (615)
T 1pgu_A 270 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349 (615)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTT
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecC
Confidence 999999999999876521111100000000000000001100000 01111222
Q ss_pred -------------------eecCCceEEEEEeC-CeEEEecCCCcEEEEEcCC---------------------------
Q 018591 125 -------------------IEHADSISCLTVYN-GLIYSGSWDKTLKVWRVAD--------------------------- 157 (353)
Q Consensus 125 -------------------~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~--------------------------- 157 (353)
.+|...|.+++|.+ +.+++++.|+.|++||+.+
T Consensus 350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 429 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL 429 (615)
T ss_dssp TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEE
T ss_pred cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCce
Confidence 24556666666654 6777777777777777653
Q ss_pred -------ceeeeeccccCcceEEEEEeCCeEEEEcC-CCcEEEEeCCCCCcccccce-eeeeccCCceeeEEEEcCCCCe
Q 018591 158 -------LKCLESIKAHDDAVNGLVASKGIVYSASA-DGKIKAWGKELGKSHCHSLK-GILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 158 -------~~~~~~~~~~~~~v~~i~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
++.+..+ .+...+.++++++..+++++. |+.|++||+.+++ .. ..+..|...+ .+++|+|++++
T Consensus 430 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~-----~~~~~~~~~~~~v-~~~~~s~~g~~ 502 (615)
T 1pgu_A 430 LILQSFTGDIIKSV-RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE-----VSFDLKTPLRAKP-SYISISPSETY 502 (615)
T ss_dssp EEEETTTCCEEEEE-ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE-----EEEECSSCCSSCE-EEEEECTTSSE
T ss_pred EEEeccCCceeeec-ccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcc-----ccccccCCccCce-EEEEECCCCCE
Confidence 2223333 256778888888778888888 9999999998765 22 5556676665 99999999999
Q ss_pred EEeecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEE------------cCcEEEEecCCCeEEEEecCCCcceEE
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCL------------VGEFLCSGSADKSIGIWKREAFGKLCR 295 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~------------~~~~l~~~~~dg~i~iw~~~~~~~~~~ 295 (353)
|++++.||.|++||+.++ +....+.+ |...+.++.+ ++++|++++.||.|++||+.++.. .
T Consensus 503 l~~~~~dg~i~iw~~~~~----~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~ 576 (615)
T 1pgu_A 503 IAAGDVMGKILLYDLQSR----EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--I 576 (615)
T ss_dssp EEEEETTSCEEEEETTTT----EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--C
T ss_pred EEEcCCCCeEEEeeCCCC----cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce--e
Confidence 999999999999999987 45555666 8888887776 678999999999999999998732 5
Q ss_pred eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
+..+.+|...|++++|+|+ ++ |++++.||.|++|+++.
T Consensus 577 ~~~~~~h~~~v~~l~~s~~----~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 577 IKALNAHKDGVNNLLWETP----ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEETTSSTTCEEEEEEEET----TE-EEEEETTSCEEEEEEC-
T ss_pred chhhhcCccceEEEEEcCC----CC-eEEecCCceEEEEeeec
Confidence 6668899999999999999 99 99999999999999875
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-41 Score=283.01 Aligned_cols=295 Identities=13% Similarity=0.089 Sum_probs=220.3
Q ss_pred eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc--eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEc
Q 018591 10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL--RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~ 83 (353)
..++.|.++|++++|+ +++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+ +++|++++.||.|++||+
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 3455678899999996 889999999999999999988 7888899999999999998 789999999999999999
Q ss_pred ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce--
Q 018591 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK-- 159 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~-- 159 (353)
+++... .....+.+|...|.+++|+| ++|++++.|+.|++||+++++
T Consensus 85 ~~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 85 RPDGTW-----------------------------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp ----CC-----------------------------CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred CCCCce-----------------------------eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 876400 01122237999999999998 799999999999999998877
Q ss_pred -eeeeccc-cCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcc-------------cccceeeeeccCCceeeEEEE
Q 018591 160 -CLESIKA-HDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSH-------------CHSLKGILEGHKDVSLNSVVV 222 (353)
Q Consensus 160 -~~~~~~~-~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~ 222 (353)
....+.. |...|.+++|+++ ++++++.|+.|++||++..... ...+...+ .|...+ .+++|
T Consensus 136 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~ 213 (377)
T 3dwl_C 136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV-HAVGF 213 (377)
T ss_dssp CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE-EEEEE
T ss_pred eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE-EEEEE
Confidence 3667777 9999999999443 8999999999999998643210 11233444 666655 99999
Q ss_pred cCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc-c-------
Q 018591 223 SDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG-K------- 292 (353)
Q Consensus 223 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~-~------- 292 (353)
+|++++|++++.||.|++||+.++.........+..|...+.++.+ ++++|++|+.++.+ +|+..... .
T Consensus 214 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 292 (377)
T 3dwl_C 214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDA 292 (377)
T ss_dssp CTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCS
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecc
Confidence 9999999999999999999999885443446677788887877766 58899999877766 66554211 0
Q ss_pred -------------------e---------EEe-------------ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591 293 -------------------L---------CRV-------------GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL 331 (353)
Q Consensus 293 -------------------~---------~~~-------------~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i 331 (353)
. ... .....|...|+++.+.+....+...|+|++.||.|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i 372 (377)
T 3dwl_C 293 GTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRV 372 (377)
T ss_dssp CCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEE
T ss_pred cccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcE
Confidence 0 000 01123999999999877521111279999999999
Q ss_pred EEEEc
Q 018591 332 RVWWV 336 (353)
Q Consensus 332 ~iw~~ 336 (353)
++||+
T Consensus 373 ~iWdl 377 (377)
T 3dwl_C 373 VLWTL 377 (377)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6e-39 Score=274.63 Aligned_cols=304 Identities=24% Similarity=0.335 Sum_probs=244.0
Q ss_pred CCCCceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecCCCc
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSR 77 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~ 77 (353)
..+++++..+.+|.++|++++|+ +.+|++|+.||+|++||+.+++.+..+.+|...|.++++. +.++++++.||.
T Consensus 149 ~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 149 SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred CCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence 46788999999999999999997 5599999999999999999999999999999999999986 478999999999
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCC
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~ 157 (353)
|++||+++......... ..........+. ........+.+|...+.++...++++++|+.||.|++||+++
T Consensus 229 i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~ 299 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGE-----EHDYPLVFHTPE----ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 299 (464)
T ss_dssp EEEEECCCCCCC-----------CCSSEEESCGG----GCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred EEEeeCCCCcccccccc-----cCCcceEeeccC----CCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 99999987652211100 000000000000 001123455689999999988889999999999999999999
Q ss_pred ceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591 158 LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD 235 (353)
Q Consensus 158 ~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 235 (353)
++++..+.+|...|.++++++ ..+++++.||.|++||+++++ ....+.+|...+ .+++++ ++++++++.|
T Consensus 300 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v-~~~~~~--~~~l~s~s~d 371 (464)
T 3v7d_B 300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-----LMYTLQGHTALV-GLLRLS--DKFLVSAAAD 371 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-EEEEEC--SSEEEEEETT
T ss_pred CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----EEEEEeCCCCcE-EEEEEc--CCEEEEEeCC
Confidence 999999999999999999944 499999999999999999887 777888888776 999997 5799999999
Q ss_pred CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEecc-ccCCCcCeEEEEeecC
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGA-ITGHEGPVKCLQASPN 314 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~ 314 (353)
|.|++||+.+...... ....+...+.++.++++++++|+ ||.|++||+++++ .+.. +.+|...|.+++|++
T Consensus 372 g~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~---~~~~~~~~~~~~v~~v~~~~- 443 (464)
T 3v7d_B 372 GSIRGWDANDYSRKFS---YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK---LVHANILKDADQIWSVNFKG- 443 (464)
T ss_dssp SEEEEEETTTCCEEEE---EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC---EEESCTTTTCSEEEEEEEET-
T ss_pred CcEEEEECCCCceeee---ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc---EEehhhccCCCcEEEEEecC-
Confidence 9999999998642222 22344566788888999999998 8999999999987 4443 567899999999984
Q ss_pred CCCCCeEEEEccCCCeEEEEE
Q 018591 315 AVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~ 335 (353)
..++++++.||.+.+|-
T Consensus 444 ----~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 444 ----KTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp ----TEEEEEEEETTEEEEEE
T ss_pred ----CEEEEEEEeCCeEEEEE
Confidence 57777778888766554
No 53
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.6e-40 Score=269.54 Aligned_cols=281 Identities=11% Similarity=0.078 Sum_probs=229.6
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce---eeEEeccCceeeEEEEEe--CC-EEEEecCCCcEEE
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR---MFTKFGHGDGSVKAVVTV--GN-KVFTAHQDSRIRV 80 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~~ 80 (353)
+....+|.+.|++++|+ +++|++++.||.|++||+.+++ ....+..|...|.+++|+ ++ +|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 44556899999999996 8899999999999999998776 344556889999999998 78 8999999999999
Q ss_pred EEc-ccCccceeEEeeccccccceeeeecccceeEeecccceeeeee--cCCceEEEEEeC-CeEEEecCCCcEEEEEcC
Q 018591 81 WKV-SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE--HADSISCLTVYN-GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 81 w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~ 156 (353)
||+ +++.. ..+.+ |...|.+++|++ +.+++++.|+.|++||++
T Consensus 84 wd~~~~~~~---------------------------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 84 VDLIGSPSF---------------------------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp ECSSSSSSE---------------------------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred EEeccCCce---------------------------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccc
Confidence 999 77651 11226 999999999997 999999999999999998
Q ss_pred C---------ceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCC-CCcccccceeeeeccCCceeeEEEEcC-C
Q 018591 157 D---------LKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKEL-GKSHCHSLKGILEGHKDVSLNSVVVSD-D 225 (353)
Q Consensus 157 ~---------~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 225 (353)
+ ++++..+. |...|.++++.++.+++++.|+.|++||+++ ... ........+... +.+++|+| +
T Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~-i~~i~~~~~~ 205 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---NGTIEESGLKYQ-IRDVALLPKE 205 (342)
T ss_dssp HHTTBCEEEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---CCEEEECSCSSC-EEEEEECSGG
T ss_pred ccccccccccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---cceeeecCCCCc-eeEEEECCCC
Confidence 8 77777776 8899999999777799999999999999988 441 122233344444 59999999 9
Q ss_pred CCeEEeecCCCcEEEeecccc--ccceeeeeeccccc---------eeEEEEEE--cCcEEEEecCCCeEEEEecCCCcc
Q 018591 226 GKWVYGGGSDGFVMGWEGNVE--IVRWKLACETKAHE---------MAVLCVCL--VGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 226 ~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~---------~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
++++++++.||.|++|+++.. .........+..|. ..+.++.+ ++++|++++.||.|++||+.+++
T Consensus 206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~- 284 (342)
T 1yfq_A 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK- 284 (342)
T ss_dssp GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-
T ss_pred CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh-
Confidence 999999999999999999775 11112333344443 37777776 58899999999999999999877
Q ss_pred eEEeccccCC-CcCeEEEEeecCCCCCCeEEEEccCCCe-EEEEEc
Q 018591 293 LCRVGAITGH-EGPVKCLQASPNAVGGGFLLYSGSLDKS-LRVWWV 336 (353)
Q Consensus 293 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~l~s~~~dg~-i~iw~~ 336 (353)
.+..+.+| ..+|++++ |+ +++|++++.||. .+.|..
T Consensus 285 --~~~~~~~~h~~~v~~~~--~~----~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 285 --KIKNFAKFNEDSVVKIA--CS----DNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp --EEEECCCCSSSEEEEEE--EC----SSEEEEEEECTHHHHCSSS
T ss_pred --HhhhhhcccCCCceEec--CC----CCeEEEEecCCcccccccc
Confidence 56678888 99999999 88 999999999998 555543
No 54
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-39 Score=261.81 Aligned_cols=252 Identities=18% Similarity=0.256 Sum_probs=202.4
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC--ceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEE
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD--LRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRV 80 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~ 80 (353)
+..+.+|.+.|++++|+ |++||+|+.|++|++||+.+ .+.+..+.+|.+.|.+++|+ +++|++++.||+|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 45788999999999996 89999999999999999874 46788999999999999995 679999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcC
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~ 156 (353)
||++++.... ...+.+|...|.+++|+| .+|++++.|+.|++||++
T Consensus 82 Wd~~~~~~~~------------------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 82 WKEENGRWSQ------------------------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp EEBSSSCBCC------------------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred EEcCCCceEE------------------------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 9998653111 112236899999999997 489999999999999998
Q ss_pred Cce--eeeeccccCcceEEEEEeC---------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591 157 DLK--CLESIKAHDDAVNGLVASK---------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS 219 (353)
Q Consensus 157 ~~~--~~~~~~~~~~~v~~i~~~~---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (353)
++. ....+.+|...|.+++|++ ..|++++.|++|++||+++++. .......+.+|...+ .+
T Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V-~~ 209 (297)
T 2pm7_B 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWV-RD 209 (297)
T ss_dssp SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCE-EE
T ss_pred CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-eEEEEEEecCCCCce-EE
Confidence 753 2356678999999999954 3899999999999999987541 112345677888776 99
Q ss_pred EEEcCCC---CeEEeecCCCcEEEeecccccccee-eeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcc
Q 018591 220 VVVSDDG---KWVYGGGSDGFVMGWEGNVEIVRWK-LACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 220 ~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
++|+|++ .+|++++.|+.|++||++....... .......|...+.++++ ++++|++++.||.|++|+......
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~ 288 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCc
Confidence 9999984 8999999999999999987432111 11112456667777666 589999999999999999875443
No 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-39 Score=295.12 Aligned_cols=287 Identities=18% Similarity=0.251 Sum_probs=246.8
Q ss_pred ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591 7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~ 82 (353)
+..+.+.+|.+.|++++|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+ +++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 4678899999999999997 8999999999999999999999999999999999999998 88999999999999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc-e
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL-K 159 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~-~ 159 (353)
+.++. . ...+.+|...|.+++|+| ..+++++.||.|++||++++ .
T Consensus 84 ~~~~~-----~---------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 84 YNTGE-----K---------------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (814)
T ss_dssp TTTCC-----E---------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred CCCCc-----E---------------------------EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence 98775 2 122237999999999999 78999999999999999886 7
Q ss_pred eeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC--CCCeEEeecC
Q 018591 160 CLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD--DGKWVYGGGS 234 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~ 234 (353)
....+.+|...|.+++|++ +.+++++.||.|++||+.++. ....+..+....+..++|+| ++.++++++.
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----CSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 7788889999999999965 389999999999999998876 45555555544459999999 9999999999
Q ss_pred CCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee
Q 018591 235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS 312 (353)
Q Consensus 235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~ 312 (353)
||.|++||+.++ .....+..|...+.++.++ ++++++++.||.|++||+.+++ .+..+..|...+.+++|+
T Consensus 207 dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~ 279 (814)
T 3mkq_A 207 DLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---VEKTLNVGLERSWCIATH 279 (814)
T ss_dssp TSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS---EEEEECCSSSSEEEEEEC
T ss_pred CCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEeecCCCcEEEEEEc
Confidence 999999999887 4556667788888777764 7899999999999999999877 666778889999999999
Q ss_pred cCCCCCCe--EEEEccCCCeEEEEEcCCCCCc
Q 018591 313 PNAVGGGF--LLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 313 ~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
|+ +. +++++ .|+.+.+|++......
T Consensus 280 ~~----~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 280 PT----GRKNYIASG-FDNGFTVLSLGNDEPT 306 (814)
T ss_dssp TT----CGGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred cC----CCceEEEEE-eCCCEEEEEcCCCCce
Confidence 99 65 45555 4667889998765543
No 56
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-39 Score=308.48 Aligned_cols=294 Identities=21% Similarity=0.308 Sum_probs=243.6
Q ss_pred eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEc
Q 018591 8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~ 83 (353)
....+.+|.+.|++++|+ +++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +++|++++.||.|++||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 345678999999999996 8999999999999999999999999999999999999998 789999999999999999
Q ss_pred ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCce
Q 018591 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~ 159 (353)
.++. . ...+.+|...|.++.|++ ..+++|+.|+.|++||+++++
T Consensus 687 ~~~~-----~---------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 687 ATGK-----L---------------------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp TTCC-----E---------------------------EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred CCCc-----e---------------------------EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 8875 2 222337999999999987 479999999999999999999
Q ss_pred eeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccc----------------------------------
Q 018591 160 CLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCH---------------------------------- 203 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------- 203 (353)
++..+.+|...|++++|++ ..+++++.||.|++||+++++....
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 9999999999999999943 3899999999999999876541100
Q ss_pred ---------------cceeee-eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE
Q 018591 204 ---------------SLKGIL-EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC 267 (353)
Q Consensus 204 ---------------~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (353)
.....+ .+|... +.+++|+|+++++++++.||.|++||+.++ .....+.+|...+.++.
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~ 889 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHST-IQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVM 889 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSC-CCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEE
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCc-eEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceEEEE
Confidence 000111 144444 489999999999999999999999999987 45556677777777777
Q ss_pred Ec--CcEEEEecCCCeEEEEecCC--------------------------------------------------------
Q 018591 268 LV--GEFLCSGSADKSIGIWKREA-------------------------------------------------------- 289 (353)
Q Consensus 268 ~~--~~~l~~~~~dg~i~iw~~~~-------------------------------------------------------- 289 (353)
++ +++|++++.||.|++|++.+
T Consensus 890 ~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 969 (1249)
T 3sfz_A 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence 64 67888888888888887532
Q ss_pred -----------------------CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 290 -----------------------FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 290 -----------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
++ .+..+.+|...|++++|+|+ +++|++++.||.|++|++.+++.....
T Consensus 970 sp~g~~l~~g~~~g~i~i~d~~~~~---~~~~~~~h~~~v~~l~~s~d----g~~l~s~~~dg~i~vwd~~~~~~~~~~ 1041 (1249)
T 3sfz_A 970 SPHLEYVAFGDEDGAIKIIELPNNR---VFSSGVGHKKAVRHIQFTAD----GKTLISSSEDSVIQVWNWQTGDYVFLQ 1041 (1249)
T ss_dssp CTTSSEEEEEETTSCCEEEETTTTS---CEEECCCCSSCCCCEEECSS----SSCEEEECSSSBEEEEETTTTEEECCB
T ss_pred cCCCCEEEEEcCCCCEEEEEcCCCc---eeeecccCCCceEEEEECCC----CCEEEEEcCCCEEEEEECCCCceEEEe
Confidence 11 23345679999999999999 999999999999999999988765433
No 57
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2e-39 Score=260.85 Aligned_cols=253 Identities=17% Similarity=0.202 Sum_probs=206.1
Q ss_pred eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591 49 FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE 126 (353)
Q Consensus 49 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (353)
+..+.+|...|.+++|+ +++|++|+.|++|++||++..... ....+.+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------------------------------~~~~l~g 51 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------------------------------LIDTLTG 51 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------------------------------CCEEECC
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------------------------------EEEEEcc
Confidence 34567899999999998 889999999999999999754211 1223348
Q ss_pred cCCceEEEEEeC----CeEEEecCCCcEEEEEcCCce--eeeeccccCcceEEEEEeC----CeEEEEcCCCcEEEEeCC
Q 018591 127 HADSISCLTVYN----GLIYSGSWDKTLKVWRVADLK--CLESIKAHDDAVNGLVASK----GIVYSASADGKIKAWGKE 196 (353)
Q Consensus 127 ~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~----~~l~~~~~dg~i~iwd~~ 196 (353)
|..+|.+++|++ ++|++|+.|++|++||+++++ .+..+..|...|.+++|.+ .++++++.|+.|++||++
T Consensus 52 H~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 52 HEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred ccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 999999999974 689999999999999998764 5566778999999999943 489999999999999998
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcCC-------------CCeEEeecCCCcEEEeeccccccceeeeeeccccceeE
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSDD-------------GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV 263 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 263 (353)
..... ....+.+|...+ .+++|+|+ +++|++|+.|+.|++||++.+.........+.+|...|
T Consensus 132 ~~~~~---~~~~~~~h~~~v-~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V 207 (297)
T 2pm7_B 132 ENGTT---SPIIIDAHAIGV-NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (297)
T ss_dssp SSSCB---CCEEEECCSSCE-EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred CCCce---eeeeeecccCcc-ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence 76311 134566777765 99999997 57999999999999999987654445666788899999
Q ss_pred EEEEEcC-----cEEEEecCCCeEEEEecCCCcce--EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 264 LCVCLVG-----EFLCSGSADKSIGIWKREAFGKL--CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 264 ~~~~~~~-----~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
.++++++ .+|++++.|++|++||+++.... ..+....+|...|.+++|+|+ +++|++++.||.|++|+.
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS----SCCEEEEETTSCEEEEEE
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC----CCEEEEEcCCCcEEEEEE
Confidence 9998863 68999999999999999875321 122222578899999999999 999999999999999998
Q ss_pred CCC
Q 018591 337 SKQ 339 (353)
Q Consensus 337 ~~~ 339 (353)
...
T Consensus 284 ~~~ 286 (297)
T 2pm7_B 284 NLE 286 (297)
T ss_dssp CTT
T ss_pred CCC
Confidence 743
No 58
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-40 Score=281.37 Aligned_cols=286 Identities=13% Similarity=0.171 Sum_probs=233.9
Q ss_pred ccCceEEEEEC--Cc-EEEEE----------eCCCcEEEEeCCCce---eeEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591 15 HVGSVSSLALC--GE-FILSA----------SQGKDIIVWQQPDLR---MFTKFGHGDGSVKAVVTV--GNKVFTAHQDS 76 (353)
Q Consensus 15 h~~~v~~~~~~--~~-~l~s~----------~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 76 (353)
+...|.+++|+ ++ +|++| +.||.|++||+.+++ .+..+ .|...|.+++|+ +.+|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 45679999996 55 99999 899999999998876 33334 478899999997 78999999999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVW 153 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iw 153 (353)
.|++|++....... .. ...+.+|...|.+++|+| .+|++++.||.|++|
T Consensus 90 ~v~vw~~~~~~~~~-~~---------------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 90 SLELYSTNEANNAI-NS---------------------------MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CEEEECCSSTTSCC-CE---------------------------EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred eEEEeecccccccc-cc---------------------------hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 99999998732100 01 222337999999999997 689999999999999
Q ss_pred EcCCce------eee---eccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC-----Cce
Q 018591 154 RVADLK------CLE---SIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK-----DVS 216 (353)
Q Consensus 154 d~~~~~------~~~---~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~ 216 (353)
|+++++ ... .+..|...|.+++|++ ..+++++.||.|++||+++++ ....+..+. ...
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~ 216 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-----EVIHLSYTSPNSGIKQQ 216 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-----EEEEECCCCCSSCCCCC
T ss_pred ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-----cceEEeccccccccCCc
Confidence 998876 332 3467899999999943 489999999999999999886 555555552 334
Q ss_pred eeEEEEcCCC-CeEEeecCCC---cEEEeeccccccceeeeeecc-ccceeEEEEEE---cCcEEEEecCCCeEEEEecC
Q 018591 217 LNSVVVSDDG-KWVYGGGSDG---FVMGWEGNVEIVRWKLACETK-AHEMAVLCVCL---VGEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 217 v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~---~~~~l~~~~~dg~i~iw~~~ 288 (353)
+.+++|+|++ .++++++.|+ .|++||++... .....+. +|...+.++.+ ++++|++++.||.|++||++
T Consensus 217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN---TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT---SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC---CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence 5999999997 6899999998 99999998853 2344455 78888888877 47899999999999999999
Q ss_pred CCcceEEeccccCCCcCeEEEEeecCCCCCC-eEEEEccCCCeEEEEEcCCCCCccc
Q 018591 289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGG-FLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 289 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
+++ .+..+.+|...|++++|+|+ + .+|++++.||.|++|++.+......
T Consensus 294 ~~~---~~~~~~~~~~~v~~~~~s~~----~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 294 SAE---QLSQFPARGNWCFKTKFAPE----APDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp SCC---EEEEEECSSSCCCCEEECTT----CTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred CCc---cceeecCCCCceEEEEECCC----CCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 887 67778899999999999999 7 8999999999999999998776544
No 59
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-40 Score=274.70 Aligned_cols=276 Identities=16% Similarity=0.148 Sum_probs=196.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC------CCcEEEEEcccCccceeEEeecc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ------DSRIRVWKVSRSSENVFRLVDTL 97 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~------dg~i~~w~~~~~~~~~~~~~~~~ 97 (353)
.++++.++.+.....|+++... ...|...|.+++|+ |++|++++. |+.|++|+..++.... .+
T Consensus 16 ~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~-----~~ 86 (357)
T 4g56_B 16 ENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE-----SL 86 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-----GG
T ss_pred cceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-----eE
Confidence 3455666667888999976443 34689999999998 899999997 6778888876554110 00
Q ss_pred ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeee----ccccCcceE
Q 018591 98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLES----IKAHDDAVN 172 (353)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v~ 172 (353)
.....+|...|.+++|+| +.+++++.||.|++||+.+++.... ..+|...|+
T Consensus 87 -----------------------~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~ 143 (357)
T 4g56_B 87 -----------------------CTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVK 143 (357)
T ss_dssp -----------------------CSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEE
T ss_pred -----------------------ecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEE
Confidence 111227889999999999 8888999999999999988765433 347899999
Q ss_pred EEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEeecCCCcEEEeeccccccc
Q 018591 173 GLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYGGGSDGFVMGWEGNVEIVR 249 (353)
Q Consensus 173 ~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~ 249 (353)
+++|++ .+|++++.|+.|++||+++++ ....+.+|...+ .+++|+|++. ++++++.||.|++||+++++..
T Consensus 144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~h~~~v-~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~ 217 (357)
T 4g56_B 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKA-----VLKSYNAHSSEV-NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA 217 (357)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-EEEEECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEcCCCCCE-EEEEEccCCCceeeeeccCCceEEEECCCCcee
Confidence 999943 389999999999999999887 777888888876 9999999874 7899999999999999887432
Q ss_pred eeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591 250 WKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS 326 (353)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~ 326 (353)
.. .....+...+.++.++ +.+|++|+.|+.|++||+++++ .+..+.+|...|++++|+|+ ++++|++|+
T Consensus 218 ~~--~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~l~~sp~---~~~~lasgs 289 (357)
T 4g56_B 218 TR--IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD---SAQTSAVHSQNITGLAYSYH---SSPFLASIS 289 (357)
T ss_dssp CB--CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG---GCEEECCCSSCEEEEEECSS---SSCCEEEEE
T ss_pred ee--eeeccccccccchhhhhcccceEEEeecccceeEEECCCCc---EeEEEeccceeEEEEEEcCC---CCCEEEEEe
Confidence 22 2334556667777764 5689999999999999999887 56677899999999999998 136899999
Q ss_pred CCCeEEEEEcCCCCCcccccC
Q 018591 327 LDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 327 ~dg~i~iw~~~~~~~~~~~~~ 347 (353)
.||+|+|||+++++.+.....
T Consensus 290 ~D~~i~iwd~~~~~~~~~~~H 310 (357)
T 4g56_B 290 EDCTVAVLDADFSEVFRDLSH 310 (357)
T ss_dssp TTSCEEEECTTSCEEEEECCC
T ss_pred CCCEEEEEECCCCcEeEECCC
Confidence 999999999999887765543
No 60
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=270.23 Aligned_cols=290 Identities=19% Similarity=0.231 Sum_probs=232.6
Q ss_pred CCCceeeeeeCccCceEEEEEC-----CcEEEEEeCCCcEEEEeCCC-ceee-EEeccCceeeEEEEEe--CCEEEEecC
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC-----GEFILSASQGKDIIVWQQPD-LRMF-TKFGHGDGSVKAVVTV--GNKVFTAHQ 74 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~-----~~~l~s~~~dg~v~vwd~~~-~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~ 74 (353)
...+.+..+.+|.+.|++++|+ |++|++|+.||.|++||+.+ ++.+ ..+.+|...|.+++|+ +++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 3456788899999999999996 38999999999999999987 5554 7788999999999998 789999999
Q ss_pred CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE--eC--CeEEEecCCCcE
Q 018591 75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV--YN--GLIYSGSWDKTL 150 (353)
Q Consensus 75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~l~~~~~dg~v 150 (353)
||.|++||++++.. .. ..+|...|.++.| ++ .++++++.||.|
T Consensus 107 dg~v~iwd~~~~~~-----~~----------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 107 DKTAKMWDLSSNQA-----IQ----------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp TSEEEEEETTTTEE-----EE----------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred CCcEEEEEcCCCCc-----ee----------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence 99999999987651 11 1279999999999 66 679999999999
Q ss_pred EEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe--
Q 018591 151 KVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW-- 228 (353)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 228 (353)
++||+++++++..+..+ ..+.++.+.+..+++++.++.+++|+++.... ..............++++.++...
T Consensus 154 ~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T 3mmy_A 154 KFWDTRSSNPMMVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLENQPS----EFRRIESPLKHQHRCVAIFKDKQNKP 228 (368)
T ss_dssp EEECSSCSSCSEEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----EEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred EEEECCCCcEEEEEecC-CCceEEEecCCeeEEEeCCCcEEEEEeccccc----hhhhccccccCCCceEEEcccCCCCC
Confidence 99999999988888765 47778888888999999999999999987652 222222222222366776665554
Q ss_pred --EEeecCCCcEEEeeccccccceeeeeeccccce------------eEEEEEEc--CcEEEEecCCCeEEEEecCCCcc
Q 018591 229 --VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM------------AVLCVCLV--GEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 229 --l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
+++++.||.|++|+++..... .....+..|.. .+.++.++ +++|++|+.||.|++||+.+++
T Consensus 229 ~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~- 306 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART- 306 (368)
T ss_dssp EEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-
T ss_pred CeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc-
Confidence 999999999999999876321 22233444443 57777764 8899999999999999999877
Q ss_pred eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
.+..+.+|..+|++++|+|+ +++|++++.|+..+.|++...
T Consensus 307 --~~~~~~~~~~~v~~~~~s~~----g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 307 --KLKTSEQLDQPISACCFNHN----GNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp --EEEECCCCSSCEEEEEECTT----SSCEEEEECCCSTTCGGGCCT
T ss_pred --EEEEecCCCCCceEEEECCC----CCeEEEEecccccccccccCC
Confidence 67778899999999999999 999999999986666665443
No 61
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.5e-39 Score=260.44 Aligned_cols=244 Identities=23% Similarity=0.357 Sum_probs=203.2
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
+.++..+++|...|++++|+ +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+ +.+|++++.|++|++|
T Consensus 55 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999996 8899999999999999999999999999999999999998 7899999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCC--------eEEEecCCCcEEEE
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNG--------LIYSGSWDKTLKVW 153 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~l~~~~~dg~v~iw 153 (353)
|++... ...+.+|...|.++.+.|. .+++++.|+.|++|
T Consensus 135 d~~~~~---------------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w 181 (319)
T 3frx_A 135 TIKGQC---------------------------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181 (319)
T ss_dssp ETTSCE---------------------------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEE
T ss_pred ECCCCe---------------------------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEE
Confidence 986432 1122379999999999872 79999999999999
Q ss_pred EcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe
Q 018591 154 RVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG 231 (353)
Q Consensus 154 d~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 231 (353)
|+++.+....+.+|...|.+++|+++ +|++++.||.|++||+++++ ....+..+. . +.+++|+|++.++++
T Consensus 182 d~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~-~-v~~~~~sp~~~~la~ 254 (319)
T 3frx_A 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-----AMYTLSAQD-E-VFSLAFSPNRYWLAA 254 (319)
T ss_dssp ETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----EEEEEECCS-C-EEEEEECSSSSEEEE
T ss_pred ECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecCCC-c-EEEEEEcCCCCEEEE
Confidence 99999999999999999999999443 89999999999999999886 555555543 3 599999999999998
Q ss_pred ecCCCcEEEeeccccccceeeeee----ccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591 232 GGSDGFVMGWEGNVEIVRWKLACE----TKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 232 ~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
++.++ +++|++............ ...+...+.++++ +|++|++|+.||.|++||+.+.
T Consensus 255 ~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 255 ATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 87655 999999876322222111 1234455655555 6999999999999999998753
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.5e-40 Score=279.65 Aligned_cols=276 Identities=16% Similarity=0.193 Sum_probs=220.3
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEE
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 93 (353)
.+++++|+ +++|++|+.||.|++||+.+++....+..| ..+....++ +++|++++.||.|++||++++. .
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----Q 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----E
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----e
Confidence 34578885 889999999999999999988877766666 333333444 8899999999999999988664 2
Q ss_pred eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591 94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV 171 (353)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v 171 (353)
.. .+.+|...|.+++|+| ++|++|+.|+.|++||+++++.+..+.+|...|
T Consensus 132 ~~---------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 184 (420)
T 3vl1_A 132 RE---------------------------IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 184 (420)
T ss_dssp EE---------------------------ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE
T ss_pred ee---------------------------ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE
Confidence 21 2227999999999998 799999999999999999999999999999999
Q ss_pred EEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC---C--------------------ceeeEEEEcCCC
Q 018591 172 NGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK---D--------------------VSLNSVVVSDDG 226 (353)
Q Consensus 172 ~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~--------------------~~v~~~~~~~~~ 226 (353)
.+++|++ ..+++++.|+.|++||+++++ ....+..+. . ..+.+++|+|++
T Consensus 185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (420)
T 3vl1_A 185 TDIAIIDRGRNVLSASLDGTIRLWECGTGT-----TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259 (420)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTE-----EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEeECCCCc-----eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence 9999944 389999999999999999886 444444321 1 223556678999
Q ss_pred CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--Cc-EEEEecCCCeEEEEecCCCcceEEeccccC-C
Q 018591 227 KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GE-FLCSGSADKSIGIWKREAFGKLCRVGAITG-H 302 (353)
Q Consensus 227 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h 302 (353)
+++++++.||.|++||++++.. .......|...+.++.++ +. +|++|+.||.|++||+++++. .+..+.+ |
T Consensus 260 ~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~ 334 (420)
T 3vl1_A 260 KYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--PVGEFLINE 334 (420)
T ss_dssp EEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEEEST
T ss_pred CEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--chhhhhccC
Confidence 9999999999999999988742 222234567788888775 55 999999999999999998753 2444554 6
Q ss_pred CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
...|.++.+ |+ +.+|++++.||.|++|++..+..
T Consensus 335 ~~~v~~~~~-~~----~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 335 GTPINNVYF-AA----GALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp TSCEEEEEE-ET----TEEEEEETTTEEEEEEEECCTTC
T ss_pred CCCceEEEe-CC----CCEEEEecCCccEEEEeccCCCC
Confidence 778888855 56 78999999999999999987543
No 63
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.8e-39 Score=275.27 Aligned_cols=252 Identities=23% Similarity=0.353 Sum_probs=220.9
Q ss_pred CCCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~ 82 (353)
..+++.+..+.+|.++|++++|++++|++|+.||.|++||+.+++.+..+.+|...|.++.|+++.+++++.||.|++||
T Consensus 160 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 160 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 239 (435)
T ss_dssp SSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEE
T ss_pred CCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEe
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeee
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLE 162 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 162 (353)
++++..... ...+.+|...|.++.+.++++++|+.||.|++||+++++++.
T Consensus 240 ~~~~~~~~~-----------------------------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 240 MASPTDITL-----------------------------RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp CSSSSCCEE-----------------------------EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCCCCcee-----------------------------eeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEE
Confidence 987652111 122337999999999988999999999999999999999999
Q ss_pred eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591 163 SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 163 ~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 242 (353)
.+.+|...|.++.++++.+++++.||.|++||+++++ ....+.+|...+ .+++| ++.++++|+.||.|++||
T Consensus 291 ~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~v-~~~~~--~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 291 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA-----CLRVLEGHEELV-RCIRF--DNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE-EEEEC--CSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC-----EEEEEeCCcCcE-EEEEe--cCCEEEEEeCCCcEEEEE
Confidence 9999999999999998999999999999999999887 777888888766 88888 688999999999999999
Q ss_pred ccccccce-----eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc
Q 018591 243 GNVEIVRW-----KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 243 ~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
+..+.... .....+.+|...+.++.+++.+|++|+.||.|++||+.+..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 363 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp HHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred CCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 98763111 14566778999999999999999999999999999998765
No 64
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.3e-40 Score=267.05 Aligned_cols=257 Identities=16% Similarity=0.195 Sum_probs=197.0
Q ss_pred eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe----CCEEEEecCCCcEEEE
Q 018591 10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~w 81 (353)
..+.+|.++|++++|+ |++||+|+.|++|++||+.+++ .+..+.+|...|.+++|+ +++|++++.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3567999999999996 8999999999999999998764 567889999999999995 6899999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~ 157 (353)
|++++.... ...+.+|...|.+++|+| .+|++|+.|+.|++||++.
T Consensus 87 d~~~~~~~~------------------------------~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 87 REENGTWEK------------------------------SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp CCSSSCCCE------------------------------EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred ECCCCcceE------------------------------EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 998653111 112237999999999998 3799999999999999986
Q ss_pred ce---eeeeccccCcceEEEEEeC-------------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc
Q 018591 158 LK---CLESIKAHDDAVNGLVASK-------------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV 215 (353)
Q Consensus 158 ~~---~~~~~~~~~~~v~~i~~~~-------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (353)
+. ....+.+|...|.+++|++ .+|++++.|+.|++||++... .......+.+|...
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~l~~h~~~ 214 (316)
T 3bg1_A 137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG--QWKEEQKLEAHSDW 214 (316)
T ss_dssp SSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS--CEEEEECCBCCSSC
T ss_pred CCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC--ccceeeecccCCCc
Confidence 53 2456678999999999943 379999999999999997542 01145567788877
Q ss_pred eeeEEEEcCCC----CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591 216 SLNSVVVSDDG----KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 216 ~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~ 289 (353)
+ .+++|+|++ ++|++++.|++|++|++............+..|...+.+++++ +++|++++.|+.|++|+...
T Consensus 215 V-~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 215 V-RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp E-EEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred e-EEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 6 999999986 7899999999999999876311101112234567778777764 88999999999999999764
Q ss_pred CcceEEeccc
Q 018591 290 FGKLCRVGAI 299 (353)
Q Consensus 290 ~~~~~~~~~~ 299 (353)
.....++..+
T Consensus 294 ~g~~~~~~~~ 303 (316)
T 3bg1_A 294 DGQWVCISDV 303 (316)
T ss_dssp TSCEEEEEEC
T ss_pred CCcEEEeeec
Confidence 4333344333
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-39 Score=261.52 Aligned_cols=259 Identities=20% Similarity=0.272 Sum_probs=202.7
Q ss_pred CCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591 44 PDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123 (353)
Q Consensus 44 ~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (353)
.+.+++..+.+|...|.++.|++++|++++.|++|++||++.+... ....+..
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~---~~~~~~~------------------------ 54 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFT---LIDVLDE------------------------ 54 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCE---EEEEECT------------------------
T ss_pred cccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeE---EEEEEec------------------------
Confidence 3566788899999999999999889999999999999999765311 1111100
Q ss_pred eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC-------ceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEE
Q 018591 124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD-------LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKA 192 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~i 192 (353)
.+|...|.+++|+| ++|++|+.|+.|++||++. .+++..+.+|...|.+++|++ .+|++++.|++|++
T Consensus 55 -~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~i 133 (330)
T 2hes_X 55 -TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI 133 (330)
T ss_dssp -TCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEE
T ss_pred -CCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence 04999999999999 8899999999999999853 356777889999999999944 38999999999999
Q ss_pred EeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---
Q 018591 193 WGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--- 269 (353)
Q Consensus 193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 269 (353)
||++.... .......+.+|...+ .+++|+|++.+|++++.|+.|++||...+. ......+.+|...|.++.++
T Consensus 134 wd~~~~~~-~~~~~~~~~~h~~~v-~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 134 WETDESGE-EYECISVLQEHSQDV-KHVIWHPSEALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTE 209 (330)
T ss_dssp EECCTTCC-CCEEEEEECCCSSCE-EEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSS
T ss_pred EeccCCCC-CeEEEEEeccCCCce-EEEEECCCCCEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCC
Confidence 99954320 112455677887766 999999999999999999999999987642 24556778899999888875
Q ss_pred -CcEEEEecCCCeEEEEecCCCcc-----eEEeccccC-CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 270 -GEFLCSGSADKSIGIWKREAFGK-----LCRVGAITG-HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 270 -~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
+.+|++|+.|++|++||+..+.. ......+.+ |...|.+++|+++ + +|++++.||.|++|+..++
T Consensus 210 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN----G-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT----S-CEEEEETTSCEEEEEEETT
T ss_pred CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC----C-EEEEEeCCCEEEEEEcCCC
Confidence 45899999999999999875421 123344544 9999999999975 4 8999999999999998765
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=271.46 Aligned_cols=308 Identities=13% Similarity=0.245 Sum_probs=221.2
Q ss_pred ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce-----------eeEEeccCc------------eeeEEEEEe--C-
Q 018591 15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR-----------MFTKFGHGD------------GSVKAVVTV--G- 66 (353)
Q Consensus 15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~--~- 66 (353)
|.+.|++++|+ +++||+|+.||.|++||+.+++ ....+.+|. ..|.+++|+ +
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999996 8999999999999999998877 577888998 889999998 3
Q ss_pred -CEEEEecCCCcEEEEEcccCccceeEEeeccccccc----------eeeeecccceeEeecccceee-eeecCCceEEE
Q 018591 67 -NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD----------YLGKFMKQSNYVQTRRHHKRL-WIEHADSISCL 134 (353)
Q Consensus 67 -~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 134 (353)
..|++++.||.|++||+..+.... ....+..... .......+.... ......+. ..+|...|.++
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRP--EGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLM-VEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEE--ECCSCC--------CCCCCSCCCCEEEEEEEE-EEEEEEEEECSCCSSCCCEE
T ss_pred cceEEEeCCCCeEEEEecccccCCc--ceecccCccccccCcccccceEeccccchhee-eeccceEEeccCCCcceEEE
Confidence 689999999999999998654210 0000000000 000000000111 11111222 35899999999
Q ss_pred EEeC--CeEEEecCCCcEEEEEcCC-ceeee-------eccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcc
Q 018591 135 TVYN--GLIYSGSWDKTLKVWRVAD-LKCLE-------SIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSH 201 (353)
Q Consensus 135 ~~~~--~~l~~~~~dg~v~iwd~~~-~~~~~-------~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~ 201 (353)
+|+| .+|++| .|+.|++||+++ ++.+. .+.+|...|.+++|++ ..+++++.||.|++||+++++.
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~- 261 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL- 261 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS-
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc-
Confidence 9999 788888 799999999984 44444 3678999999999943 5899999999999999998761
Q ss_pred cccceeeeeccCC-----------ceeeEEEEcCCCCeEEeecCCCcEEEeeccc-cccceeeeeecccccee-------
Q 018591 202 CHSLKGILEGHKD-----------VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV-EIVRWKLACETKAHEMA------- 262 (353)
Q Consensus 202 ~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~------- 262 (353)
.......+..|.. ..|.+++|+|++++|++++. +.|++||++. + .....+..|...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~----~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN----RPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS----SCSCCEESCGGGTTTHHHH
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc----cccceeecccccccccccc
Confidence 0011456666665 14599999999999999998 9999999987 4 333444444321
Q ss_pred ----------EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEecc-----------------------------ccCCC
Q 018591 263 ----------VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGA-----------------------------ITGHE 303 (353)
Q Consensus 263 ----------v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------------------------~~~h~ 303 (353)
..++++++++|++|+.||.|++||+.+++....... ...+.
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN 416 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccC
Confidence 156777899999999999999999998764321100 11345
Q ss_pred cCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 304 ~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
..|.+++|+|+ +++|++++.|+ +.+|.-+
T Consensus 417 ~~i~~~~~~p~----~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 417 KKILHTAWHPK----ENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SCCCEEEECSS----SSEEEEECSSC-EEEEECC
T ss_pred CceeEEEECCC----CCEEEEEecce-eeeeccc
Confidence 67999999999 99999998886 7788643
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4e-39 Score=265.47 Aligned_cols=298 Identities=15% Similarity=0.123 Sum_probs=216.7
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc----eeeEEeccCceeeEEEEEe----CCEEEEecCCCcE
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL----RMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRI 78 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i 78 (353)
...+.+|.++|++++|+ +++|++|+.||.|++||+.++ +....+.+|...|.+++|+ +++|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 45678999999999996 889999999999999999876 4677788999999999996 6799999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEE
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd 154 (353)
++||++.+...... ........+.+|...|.+++|+| .++++++.||.|++||
T Consensus 84 ~vwd~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 84 KLWEEDPDQEECSG-----------------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD 140 (351)
T ss_dssp EEEEECTTSCTTSS-----------------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred EEEecCCCcccccc-----------------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence 99999876421000 00011223347999999999997 4899999999999999
Q ss_pred cCCceeeeecc-------------ccCcceEEEEEe-----CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce
Q 018591 155 VADLKCLESIK-------------AHDDAVNGLVAS-----KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS 216 (353)
Q Consensus 155 ~~~~~~~~~~~-------------~~~~~v~~i~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 216 (353)
+++++.+..+. .|...+.+++|. +..+++++.++.+.+|+...++. .....+.+|...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~i 217 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL---HVAAKLPGHKSLI 217 (351)
T ss_dssp CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE---EEEEECCCCCSCE
T ss_pred CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce---eeeeecCCCCcce
Confidence 98876554443 577889999993 45999999999998888776651 1355666777765
Q ss_pred eeEEEEcCCC----CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEE----EecCCCeEEEEe
Q 018591 217 LNSVVVSDDG----KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLC----SGSADKSIGIWK 286 (353)
Q Consensus 217 v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~----~~~~dg~i~iw~ 286 (353)
.+++|+|++ ++|++++.||.|++||++........ ..+........ .....+. .+.....+.+|+
T Consensus 218 -~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (351)
T 3f3f_A 218 -RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS----EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292 (351)
T ss_dssp -EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------------CC
T ss_pred -eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc----CCcccceeccCCCcccccccccccccccceeeeecc
Confidence 999999998 89999999999999999876322221 11111111111 1122222 233344555555
Q ss_pred cCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 287 REAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 287 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
.... ..+..+.+|...|++++|+|+ +++|++++.||.|++|++.+++....
T Consensus 293 ~~~~---~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 293 NLQV---ELLSEHDDHNGEVWSVSWNLT----GTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp SEEE---EEEEEECTTSSCEEEEEECSS----SCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cccc---cEEEEEecccccEEEEEEcCC----CCEEEEecCCCcEEEEecCcCcchhh
Confidence 4443 377788899999999999999 99999999999999999998876554
No 68
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-38 Score=261.46 Aligned_cols=284 Identities=19% Similarity=0.243 Sum_probs=232.4
Q ss_pred ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccce
Q 018591 15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENV 90 (353)
Q Consensus 15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~ 90 (353)
|.++|.+++|+ |++++++..++.+..|+...........+|...|.+++|+ ++++++++ ||.|++||++++....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 56789999996 8999999888888888766655555556789999999998 77888888 9999999998764211
Q ss_pred eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce--eeeeccc
Q 018591 91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK--CLESIKA 166 (353)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~--~~~~~~~ 166 (353)
.... ....+|...|.+++|+| +++++++.||.|++||+++++ ....+..
T Consensus 87 ~~~~---------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 87 PVSQ---------------------------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp CSEE---------------------------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred eeec---------------------------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence 1000 00116889999999999 789999999999999998877 5667788
Q ss_pred cCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591 167 HDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244 (353)
Q Consensus 167 ~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 244 (353)
|...|.+++|.+ ..+++++.||.|++||+++++ ....+..|...+ .+++|+|+++++++++.||.|++||++
T Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----LVRQFQGHTDGA-SCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----eeeeeecccCce-EEEEECCCCCEEEEEecCCcEEEEECC
Confidence 999999999943 489999999999999999886 667777777766 999999999999999999999999999
Q ss_pred ccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591 245 VEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL 322 (353)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l 322 (353)
++... ... .+...+.++.+ +++++++++.++.|++||+.+++. ..+..|...|.+++|+|+ +++|
T Consensus 214 ~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~~~v~~~~~~~~----~~~l 280 (337)
T 1gxr_A 214 EGRQL----QQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK----YQLHLHESCVLSLKFAYC----GKWF 280 (337)
T ss_dssp TTEEE----EEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE----EEECCCSSCEEEEEECTT----SSEE
T ss_pred CCceE----eee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe----EEEcCCccceeEEEECCC----CCEE
Confidence 87422 222 24455666665 588999999999999999998752 346789999999999999 9999
Q ss_pred EEccCCCeEEEEEcCCCCCcccc
Q 018591 323 YSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 323 ~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
++++.||.|++|++.+++.+...
T Consensus 281 ~~~~~dg~i~~~~~~~~~~~~~~ 303 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp EEEETTSEEEEEETTTCCEEEEE
T ss_pred EEecCCCcEEEEECCCCeEEEEe
Confidence 99999999999999998776543
No 69
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=259.73 Aligned_cols=258 Identities=18% Similarity=0.267 Sum_probs=209.7
Q ss_pred CceeeEEeccCce-eeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccce
Q 018591 45 DLRMFTKFGHGDG-SVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK 121 (353)
Q Consensus 45 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (353)
..+++..+.+|.. .|.+++|+ +++|++|+.|++|++||++++......
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~----------------------------- 54 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS----------------------------- 54 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE-----------------------------
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee-----------------------------
Confidence 3456778888877 99999998 889999999999999999876411000
Q ss_pred eeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc--eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeC
Q 018591 122 RLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL--KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGK 195 (353)
Q Consensus 122 ~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~ 195 (353)
....+|...|.+++|+| ++|++|+.|+.+++||+.++ +++..+.+|...|.+++|++ ++|++++.|++|++||+
T Consensus 55 ~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~ 134 (345)
T 3fm0_A 55 VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134 (345)
T ss_dssp EECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred eeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence 01127999999999999 89999999999999998765 46788899999999999943 49999999999999999
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFL 273 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 273 (353)
+.... ......+..|...+ .+++|+|++++|++++.|+.|++||.+.+. ......+.+|...|.+++++ +++|
T Consensus 135 ~~~~~--~~~~~~~~~h~~~v-~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l 209 (345)
T 3fm0_A 135 DEEDE--YECVSVLNSHTQDV-KHVVWHPSQELLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSGQRL 209 (345)
T ss_dssp CTTSC--EEEEEEECCCCSCE-EEEEECSSSSCEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCCCC--eEEEEEecCcCCCe-EEEEECCCCCEEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCCCEE
Confidence 87641 12345667777765 999999999999999999999999988752 23445677889999888875 8899
Q ss_pred EEecCCCeEEEEecCCCcc------------eEEeccccC-CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 274 CSGSADKSIGIWKREAFGK------------LCRVGAITG-HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 274 ~~~~~dg~i~iw~~~~~~~------------~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
++|+.|++|++|+...... ...+..+.+ |...|.+++|+|+ +..|++++.|+.|++|+.....
T Consensus 210 ~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~----~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 210 ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL----TGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT----TCCEEEEETTSCEEEEEECTTS
T ss_pred EEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC----CCEEEEEeCCCeEEEEEeCCCC
Confidence 9999999999999743221 123334444 8899999999999 9999999999999999987654
No 70
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2e-37 Score=274.35 Aligned_cols=293 Identities=16% Similarity=0.196 Sum_probs=230.0
Q ss_pred CCceeeeeeCccCceEEEEEC--Cc-EEEEEeCCCcEEEEeCCCceeeEEeccCce---eeEEEEEe---CCEEEEecCC
Q 018591 5 SHRSLAVLSGHVGSVSSLALC--GE-FILSASQGKDIIVWQQPDLRMFTKFGHGDG---SVKAVVTV---GNKVFTAHQD 75 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~---~~~l~s~~~d 75 (353)
+++++..+.+|...|++++|+ ++ ++++++.||.|++||+.+++.+..+..|.. .|.+++|+ +++|++++.|
T Consensus 149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 456788899999999999997 44 899999999999999999999999999999 99999997 5689999999
Q ss_pred CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee---ecCCceEEEEEeC-CeEEEecCCCcEE
Q 018591 76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI---EHADSISCLTVYN-GLIYSGSWDKTLK 151 (353)
Q Consensus 76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~l~~~~~dg~v~ 151 (353)
|.|++||+++++ .+..+. . .|...|.++.|+. .++++++.|+.|+
T Consensus 229 g~i~vwd~~~~~-----~~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~ 277 (615)
T 1pgu_A 229 RKISCFDGKSGE-----FLKYIE--------------------------DDQEPVQGGIFALSWLDSQKFATVGADATIR 277 (615)
T ss_dssp CCEEEEETTTCC-----EEEECC--------------------------BTTBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred CeEEEEECCCCC-----EeEEec--------------------------ccccccCCceEEEEEcCCCEEEEEcCCCcEE
Confidence 999999998765 222210 1 5888999999965 8999999999999
Q ss_pred EEEcCCceeeeecccc----CcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce----------
Q 018591 152 VWRVADLKCLESIKAH----DDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS---------- 216 (353)
Q Consensus 152 iwd~~~~~~~~~~~~~----~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------- 216 (353)
+||+++++.+..+..+ ...+.++.+ .++.+++++.||.|++||+.+++ ....+.+|...+
T Consensus 278 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~~~l~~ 352 (615)
T 1pgu_A 278 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE-----VLKTISGHNKGITALTVNPLIS 352 (615)
T ss_dssp EEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE-----EEEEECCCSSCEEEEETTTTEE
T ss_pred EEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc-----EEEEEeCCCCCEEEEEecCcEE
Confidence 9999999998888766 467788888 66699999999999999988654 223333322211
Q ss_pred ----------------------eeEEEEcCCCCeEEeecCCC--------------------------------------
Q 018591 217 ----------------------LNSVVVSDDGKWVYGGGSDG-------------------------------------- 236 (353)
Q Consensus 217 ----------------------v~~~~~~~~~~~l~~~~~dg-------------------------------------- 236 (353)
|.+++| +++..+++++.|+
T Consensus 353 ~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (615)
T 1pgu_A 353 GSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431 (615)
T ss_dssp EETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred ECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence 133333 2234444444444
Q ss_pred ------------------------------------cEEEeeccccccceeee-eeccccceeEEEEEE--cCcEEEEec
Q 018591 237 ------------------------------------FVMGWEGNVEIVRWKLA-CETKAHEMAVLCVCL--VGEFLCSGS 277 (353)
Q Consensus 237 ------------------------------------~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~--~~~~l~~~~ 277 (353)
.|++||+..+. .. ..+..|...+.++.+ ++++|++++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 507 (615)
T 1pgu_A 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE----VSFDLKTPLRAKPSYISISPSETYIAAGD 507 (615)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE----EEEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred EeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcc----ccccccCCccCceEEEEECCCCCEEEEcC
Confidence 44444444431 11 445667788888877 589999999
Q ss_pred CCCeEEEEecCCCcceEEeccccC-CCcCeEEEEeec----------CCCCCCeEEEEccCCCeEEEEEcCCC-CCcccc
Q 018591 278 ADKSIGIWKREAFGKLCRVGAITG-HEGPVKCLQASP----------NAVGGGFLLYSGSLDKSLRVWWVSKQ-SSTSDS 345 (353)
Q Consensus 278 ~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~----------~~~~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~ 345 (353)
.||.|++||+.+++ .+..+.+ |...|++++|+| + +++|++++.||.|++|++.++ +.+...
T Consensus 508 ~dg~i~iw~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 580 (615)
T 1pgu_A 508 VMGKILLYDLQSRE---VKTSRWAFRTSKINAISWKPAEKGANEEEIE----EDLVATGSLDTNIFIYSVKRPMKIIKAL 580 (615)
T ss_dssp TTSCEEEEETTTTE---EEECCSCCCSSCEEEEEECCCC------CCS----CCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred CCCeEEEeeCCCCc---ceeEeecCCCCceeEEEEcCccccccccccC----CCEEEEEcCCCcEEEEECCCCceechhh
Confidence 99999999999877 5666777 999999999999 8 999999999999999999987 454443
No 71
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-39 Score=269.64 Aligned_cols=264 Identities=17% Similarity=0.202 Sum_probs=214.6
Q ss_pred CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccccee
Q 018591 36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY 113 (353)
Q Consensus 36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
..+..|+..+..+...+.+|.+.|.+++|+ +++|++|+.||+|++||+.++. .
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----~-------------------- 100 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----K-------------------- 100 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----E--------------------
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----c--------------------
Confidence 456678888888999999999999999998 7899999999999999998765 1
Q ss_pred EeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce-------eeeeccccCcceEEEEEeC---CeE
Q 018591 114 VQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK-------CLESIKAHDDAVNGLVASK---GIV 181 (353)
Q Consensus 114 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~---~~l 181 (353)
...+..|...|.+++|+| .++++|+.|+.+++||+.+.. ....+.+|.+.|.++.|.+ ..+
T Consensus 101 -------~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l 173 (380)
T 3iz6_a 101 -------THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173 (380)
T ss_dssp -------EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCE
T ss_pred -------ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEE
Confidence 222337889999999999 899999999999999986532 3456788999999999933 379
Q ss_pred EEEcCCCcEEEEeCCCCCcccccceeee-----eccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeee
Q 018591 182 YSASADGKIKAWGKELGKSHCHSLKGIL-----EGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACE 255 (353)
Q Consensus 182 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 255 (353)
++++.|++|++||+++++ ....+ .+|...+ .++++++ +++++++|+.|+.|++||++... .....
T Consensus 174 ~s~s~D~~i~~wd~~~~~-----~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---~~~~~ 244 (380)
T 3iz6_a 174 ITGSGDQTCVLWDVTTGQ-----RISIFGSEFPSGHTADV-LSLSINSLNANMFISGSCDTTVRLWDLRITS---RAVRT 244 (380)
T ss_dssp EEECTTSCEEEECTTTCC-----EEEEECCCSSSSCCSCE-EEEEECSSSCCEEEEEETTSCEEEEETTTTC---CCCEE
T ss_pred EEECCCCcEEEEEcCCCc-----EEEEeecccCCCCccCe-EEEEeecCCCCEEEEEECCCeEEEEECCCCC---cceEE
Confidence 999999999999999887 33333 4566655 9999977 78999999999999999997432 34556
Q ss_pred ccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccc----cCCCcCeEEEEeecCCCCCCeEEEEccCCC
Q 018591 256 TKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAI----TGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329 (353)
Q Consensus 256 ~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg 329 (353)
+.+|...|.++.+ ++++|++|+.||+|++||+++++....+... ..+...|++++|+|+ +++|++|+.||
T Consensus 245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~g~~dg 320 (380)
T 3iz6_a 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS----GRLLFAGYSNG 320 (380)
T ss_dssp ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS----SSEEEEECTTS
T ss_pred ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC----CCEEEEEECCC
Confidence 6788888888777 4889999999999999999987743222111 112335899999999 99999999999
Q ss_pred eEEEEEcCCCCCccc
Q 018591 330 SLRVWWVSKQSSTSD 344 (353)
Q Consensus 330 ~i~iw~~~~~~~~~~ 344 (353)
.|++||+..++....
T Consensus 321 ~i~vwd~~~~~~~~~ 335 (380)
T 3iz6_a 321 DCYVWDTLLAEMVLN 335 (380)
T ss_dssp CEEEEETTTCCEEEE
T ss_pred CEEEEECCCCceEEE
Confidence 999999988776543
No 72
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-37 Score=295.33 Aligned_cols=330 Identities=17% Similarity=0.229 Sum_probs=255.6
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecCCC
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDS 76 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg 76 (353)
..+++.+..+.+|.+.|++++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +..+++++.||
T Consensus 644 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~ 723 (1249)
T 3sfz_A 644 AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723 (1249)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred CCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence 46788899999999999999996 8899999999999999999999999999999999999997 34799999999
Q ss_pred cEEEEEcccCccce--------eEEeeccccccceeeeeccc--------------------------------------
Q 018591 77 RIRVWKVSRSSENV--------FRLVDTLPTTKDYLGKFMKQ-------------------------------------- 110 (353)
Q Consensus 77 ~i~~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-------------------------------------- 110 (353)
.|++||++++.... ...+...+... .+......
T Consensus 724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1249)
T 3sfz_A 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802 (1249)
T ss_dssp CEEEEETTSSSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC
T ss_pred eEEEEECCCcchhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEE
Confidence 99999998765211 11111111111 11000000
Q ss_pred -------ceeEe-ecccce------------eeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccC
Q 018591 111 -------SNYVQ-TRRHHK------------RLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHD 168 (353)
Q Consensus 111 -------~~~~~-~~~~~~------------~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 168 (353)
...+. ...... ....+|...|.+++|+| ..+++++.||.|++||+.++..+..+.+|.
T Consensus 803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~ 882 (1249)
T 3sfz_A 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL 882 (1249)
T ss_dssp CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence 00000 000001 11127788899999998 889999999999999999999999999999
Q ss_pred cceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCc----------------------------------------------
Q 018591 169 DAVNGLVASKG--IVYSASADGKIKAWGKELGKS---------------------------------------------- 200 (353)
Q Consensus 169 ~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~---------------------------------------------- 200 (353)
..|.+++|+++ .+++++.||.|++||+.....
T Consensus 883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence 99999999433 899999999999998542100
Q ss_pred ----------------------------ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceee
Q 018591 201 ----------------------------HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKL 252 (353)
Q Consensus 201 ----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 252 (353)
........+.+|...+ .+++|+|+++++++++.||.|++||+.++. .
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~----~ 1037 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV-RHIQFTADGKTLISSSEDSVIQVWNWQTGD----Y 1037 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC-CCEEECSSSSCEEEECSSSBEEEEETTTTE----E
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce-EEEEECCCCCEEEEEcCCCEEEEEECCCCc----e
Confidence 0011223344566655 999999999999999999999999999873 2
Q ss_pred eeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591 253 ACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL 331 (353)
Q Consensus 253 ~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i 331 (353)
. ....|...+.++.+. +..+++++.||.|++||+.+++ .+..+.+|.+.|++++|+|+ +++|++++.||+|
T Consensus 1038 ~-~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~s~d----~~~l~s~s~d~~v 1109 (1249)
T 3sfz_A 1038 V-FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR---IERDFTCHQGTVLSCAISSD----ATKFSSTSADKTA 1109 (1249)
T ss_dssp E-CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC---CCEEEECCSSCCCCEEECSS----SSSCEEECCSSCC
T ss_pred E-EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc---eeEEEcccCCcEEEEEECCC----CCEEEEEcCCCcE
Confidence 2 345778888888886 6678999999999999999887 56667889999999999999 9999999999999
Q ss_pred EEEEcCCCCCccccc
Q 018591 332 RVWWVSKQSSTSDSE 346 (353)
Q Consensus 332 ~iw~~~~~~~~~~~~ 346 (353)
++||+.+++.+....
T Consensus 1110 ~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A 1110 KIWSFDLLSPLHELK 1124 (1249)
T ss_dssp CEECSSSSSCSBCCC
T ss_pred EEEECCCcceeeeec
Confidence 999999988776655
No 73
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-37 Score=259.94 Aligned_cols=234 Identities=21% Similarity=0.405 Sum_probs=197.0
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEE
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 93 (353)
.|++++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++|++++.|++|++||+++++ .
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-----~ 199 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-----C 199 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----E
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-----e
Confidence 49999996 8999999999999999999999999999999999999997 7899999999999999998765 1
Q ss_pred eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeec------
Q 018591 94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESI------ 164 (353)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~------ 164 (353)
...+ .+...+.+++++| .++++|+.|+.|++||+++++.+..+
T Consensus 200 ~~~~----------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~ 251 (393)
T 1erj_A 200 SLTL----------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 251 (393)
T ss_dssp EEEE----------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred EEEE----------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC
Confidence 1111 4566799999987 78999999999999999998877766
Q ss_pred -cccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcc-------cccceeeeeccCCceeeEEEEcCCCCeEEeecC
Q 018591 165 -KAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSH-------CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS 234 (353)
Q Consensus 165 -~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 234 (353)
.+|...|.+++|++ ..+++++.|+.|++||+++.... .......+.+|...+ .+++|+|++.+|++|+.
T Consensus 252 ~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~sgs~ 330 (393)
T 1erj_A 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV-LSVATTQNDEYILSGSK 330 (393)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCE-EEEEECGGGCEEEEEET
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcE-EEEEECCCCCEEEEEeC
Confidence 57899999999943 38999999999999999864311 112345667787766 99999999999999999
Q ss_pred CCcEEEeeccccccceeeeeeccccceeEEEEEEc--------CcEEEEecCCCeEEEEecCC
Q 018591 235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--------GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~dg~i~iw~~~~ 289 (353)
|+.|++||..++ .....+.+|...+.++.+. +++|++|+.||+|++|++..
T Consensus 331 D~~v~iwd~~~~----~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 331 DRGVLFWDKKSG----NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCeEEEEECCCC----eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999999987 4566778899999988864 57999999999999999864
No 74
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=283.88 Aligned_cols=197 Identities=10% Similarity=0.098 Sum_probs=165.4
Q ss_pred eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCc
Q 018591 11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
...||.+.|++++|+ +++||+|+.||+|++|+..+.+....+. |...|.+++|+ +++|++++.|++|++||+++++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEETTTEEEEEETTCEEEEEETTTCS
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc
Confidence 345899999999996 8899999999999999998887766654 67899999999 7789999999999999998765
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceee----
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCL---- 161 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~---- 161 (353)
.+..+ .|...|++++|+| +++++|+.||.|++||+++++..
T Consensus 91 -----~~~~~----------------------------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 91 -----VLTTV----------------------------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp -----EEEEE----------------------------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred -----EEEEE----------------------------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence 22211 3667899999999 89999999999999999987754
Q ss_pred -------eeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeecc-----------------CC
Q 018591 162 -------ESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGH-----------------KD 214 (353)
Q Consensus 162 -------~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~ 214 (353)
..+.+|.++|++++|++ +.+++++.||.| +||+++++ ....+..| ..
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE-----IKQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE-----EEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc-----eEEEEecccCCcCCCcccccccccccC
Confidence 34467899999999965 389999999999 99999876 44444443 11
Q ss_pred ceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591 215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI 247 (353)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 247 (353)
..|.+++|+|++++|++++.||.|++||+++++
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 335999999999999999999999999998764
No 75
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.5e-37 Score=248.33 Aligned_cols=253 Identities=22% Similarity=0.340 Sum_probs=208.8
Q ss_pred ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591 46 LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123 (353)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (353)
......+.+|...|.+++|+ +++|++++.||.|++|++.++. . ...
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----~---------------------------~~~ 60 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----F---------------------------EKT 60 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----E---------------------------EEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----c---------------------------chh
Confidence 45667788999999999998 7899999999999999997765 1 122
Q ss_pred eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCC
Q 018591 124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~ 199 (353)
+.+|...|.+++|+| ++|++++.|+.|++||+++++++..+.+|...|.++.|++ +.+++++.|+.|++||+++++
T Consensus 61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 140 (312)
T 4ery_A 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE
Confidence 237999999999999 8999999999999999999999999999999999999943 499999999999999999887
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEec
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGS 277 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~ 277 (353)
....+..|...+ .+++|+|+++++++++.||.|++||++++..... ....+...+.++. +++++|++++
T Consensus 141 -----~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 141 -----CLKTLPAHSDPV-SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT---LIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp -----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred -----EEEEecCCCCcE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE---EeccCCCceEEEEECCCCCEEEEEc
Confidence 667777777765 9999999999999999999999999988732211 1233444555554 4689999999
Q ss_pred CCCeEEEEecCCCcceEEeccccCCCcCeEE--EEee-cCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 278 ADKSIGIWKREAFGKLCRVGAITGHEGPVKC--LQAS-PNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~--~~~~-~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
.||.|++||+.+++ .+..+.+|...+.. ..++ ++ +.+|++|+.||.|++||+.+++.+....
T Consensus 212 ~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 212 LDNTLKLWDYSKGK---CLKTYTGHKNEKYCIFANFSVTG----GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp TTTEEEEEETTTTE---EEEEECSSCCSSSCCCEEEECSS----SCEEEECCTTSCEEEEETTTCCEEEEEC
T ss_pred CCCeEEEEECCCCc---EEEEEEecCCceEEEEEEEEeCC----CcEEEEECCCCEEEEEECCCchhhhhhh
Confidence 99999999999877 55666777665432 2344 45 8899999999999999999988776554
No 76
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-37 Score=254.99 Aligned_cols=252 Identities=19% Similarity=0.223 Sum_probs=210.3
Q ss_pred eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591 47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124 (353)
Q Consensus 47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (353)
+....+.+|...|.+++|+ +.+|++|+.||+|++||..+... . ..+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----~---------------------------~~~ 102 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----E---------------------------HAV 102 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----E---------------------------EEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----c---------------------------eEE
Confidence 5667889999999999998 78999999999999999877651 1 122
Q ss_pred eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc------eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEe
Q 018591 125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL------KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWG 194 (353)
Q Consensus 125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd 194 (353)
..|...|.+++|+| ..+++|+.|+.+++|++... .....+..|...|.++.|.+ ..+++++.|++|++||
T Consensus 103 ~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd 182 (354)
T 2pbi_B 103 TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD 182 (354)
T ss_dssp ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEe
Confidence 25778899999999 89999999999999998643 33456678999999999943 3899999999999999
Q ss_pred CCCCCcccccceeeeeccCCceeeEEEEcC--CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C
Q 018591 195 KELGKSHCHSLKGILEGHKDVSLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G 270 (353)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 270 (353)
+++++ ....+.+|...+ .+++++| ++++|++|+.||.|++||++++ .....+..|...+.++.++ +
T Consensus 183 ~~~~~-----~~~~~~~h~~~v-~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~ 252 (354)
T 2pbi_B 183 VESGQ-----LLQSFHGHGADV-LCLDLAPSETGNTFVSGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPSG 252 (354)
T ss_dssp TTTCC-----EEEEEECCSSCE-EEEEECCCSSCCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTS
T ss_pred CCCCe-----EEEEEcCCCCCe-EEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCeEEEEEeCCC
Confidence 99987 778888888776 8999987 5689999999999999999987 4566677888889888774 8
Q ss_pred cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 271 EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
++|++|+.|++|++||++..+..... ....+...+.+++|+|+ +.+|++|+.|+.|++||+.+++.+...
T Consensus 253 ~~l~s~s~D~~v~lwd~~~~~~~~~~-~~~~~~~~~~~~~~s~~----g~~l~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 253 DAFASGSDDATCRLYDLRADREVAIY-SKESIIFGASSVDFSLS----GRLLFAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEE-cCCCcccceeEEEEeCC----CCEEEEEECCCcEEEEECCCCceEEEE
Confidence 89999999999999999886532221 22234457899999999 999999999999999999888766544
No 77
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.2e-38 Score=256.96 Aligned_cols=251 Identities=19% Similarity=0.205 Sum_probs=197.0
Q ss_pred EeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591 51 KFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA 128 (353)
Q Consensus 51 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (353)
.+.+|...|.+++|+ +++|++|+.|++|++||++++... . ...+.+|.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~---~---------------------------~~~l~gH~ 57 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI---L---------------------------IADLRGHE 57 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---E---------------------------EEEEECCS
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---E---------------------------EEEEcCCC
Confidence 456899999999998 899999999999999999765311 1 12234899
Q ss_pred CceEEEEEeC----CeEEEecCCCcEEEEEcCCc--eeeeeccccCcceEEEEEeC----CeEEEEcCCCcEEEEeCCCC
Q 018591 129 DSISCLTVYN----GLIYSGSWDKTLKVWRVADL--KCLESIKAHDDAVNGLVASK----GIVYSASADGKIKAWGKELG 198 (353)
Q Consensus 129 ~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~i~~~~----~~l~~~~~dg~i~iwd~~~~ 198 (353)
..|.+++|++ ++|++|+.|++|++||++++ +....+.+|...|.+++|++ .++++++.|+.|++||++..
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 9999999963 78999999999999999876 45667788999999999943 38999999999999999875
Q ss_pred CcccccceeeeeccCCceeeEEEEcCC-----------------CCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSDD-----------------GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM 261 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (353)
.. ......+.+|...+ .+++|+|+ +++|++|+.|+.|++||++... .+.....+.+|..
T Consensus 138 ~~--~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 138 GQ--WEVKKINNAHTIGC-NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSD 213 (316)
T ss_dssp SC--EEECCBTTSSSSCB-CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSS
T ss_pred CC--cceeeeeccccCCc-ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCC
Confidence 31 11234455676655 89999997 4789999999999999996531 2234556788999
Q ss_pred eEEEEEEc--C----cEEEEecCCCeEEEEecCCCcc-eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591 262 AVLCVCLV--G----EFLCSGSADKSIGIWKREAFGK-LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 262 ~v~~~~~~--~----~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw 334 (353)
.|.+++++ + .+|++|+.|++|++|++.+... ......+.+|...|.+++|+|+ +++|++++.||+|++|
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~----g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT----ANILAVSGGDNKVTLW 289 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT----TCCEEEEESSSCEEEE
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC----CCEEEEEcCCCeEEEE
Confidence 99999885 3 6899999999999999986321 1112234568899999999999 9999999999999999
Q ss_pred EcCCC
Q 018591 335 WVSKQ 339 (353)
Q Consensus 335 ~~~~~ 339 (353)
+....
T Consensus 290 ~~~~~ 294 (316)
T 3bg1_A 290 KESVD 294 (316)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 98643
No 78
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=281.50 Aligned_cols=331 Identities=10% Similarity=0.094 Sum_probs=228.8
Q ss_pred eeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccC------------------ceeeEEEEEe--C
Q 018591 10 AVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHG------------------DGSVKAVVTV--G 66 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~--~ 66 (353)
..+++|.++|++++|+ +..|++|+.||.| +||+.+++.+..+..| ...|.+++|+ +
T Consensus 145 ~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg 223 (902)
T 2oaj_A 145 FFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS 223 (902)
T ss_dssp TCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred cccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence 3457899999999997 3689999999999 9999999999888765 5779999998 7
Q ss_pred CEEEEecCCCcEEEEEcccCccceeEEeecccc-------------cccee--eeec---cc--ceeEeec-c------c
Q 018591 67 NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPT-------------TKDYL--GKFM---KQ--SNYVQTR-R------H 119 (353)
Q Consensus 67 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~-------------~~~~~--~~~~---~~--~~~~~~~-~------~ 119 (353)
.+|++++.||.|++||+++++....+.+..... ....+ ..+. .+ ...+... . .
T Consensus 224 ~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~ 303 (902)
T 2oaj_A 224 LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ 303 (902)
T ss_dssp SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCc
Confidence 899999999999999998765211101100000 00001 0110 00 0111111 0 0
Q ss_pred c-----------------------------eeeee-ecCCceEEEEEeC------------CeEEEecCCCcEEEEEcCC
Q 018591 120 H-----------------------------KRLWI-EHADSISCLTVYN------------GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 120 ~-----------------------------~~~~~-~~~~~i~~~~~~~------------~~l~~~~~dg~v~iwd~~~ 157 (353)
. .+.+. .+...|..+.+.+ ..+++++.||.|++||+.+
T Consensus 304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~ 383 (902)
T 2oaj_A 304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS 383 (902)
T ss_dssp CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred eEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence 1 11221 3566777777633 2688889999999999977
Q ss_pred ceeeee-------ccccCcceEEEEE----------------------------------eC--CeEEEEcCCCcEEEEe
Q 018591 158 LKCLES-------IKAHDDAVNGLVA----------------------------------SK--GIVYSASADGKIKAWG 194 (353)
Q Consensus 158 ~~~~~~-------~~~~~~~v~~i~~----------------------------------~~--~~l~~~~~dg~i~iwd 194 (353)
+..... +..|...|+++++ ++ +.+++|+.|++|++||
T Consensus 384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd 463 (902)
T 2oaj_A 384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD 463 (902)
T ss_dssp CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE
T ss_pred CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEE
Confidence 643322 3334455555444 22 3899999999999999
Q ss_pred CCCCCccccccee-ee-----eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc-------------------
Q 018591 195 KELGKSHCHSLKG-IL-----EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR------------------- 249 (353)
Q Consensus 195 ~~~~~~~~~~~~~-~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------- 249 (353)
+.++......... .+ .+|...+ .+++|+|++++|++|+.||+|++||+.+++..
T Consensus 464 ~~~g~~~~~~~~~~~l~~~~~~~h~~~V-~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (902)
T 2oaj_A 464 ASHGDIQDNASFEVNLSRTLNKAKELAV-DKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFS 542 (902)
T ss_dssp SSCCTTTTTBCEEEEHHHHTTCSSSCCE-EEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCC
T ss_pred CCCccccCCceEEeechhhcCCCCCCce-eEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecc
Confidence 9887521100111 01 1566555 99999999999999999999999999865210
Q ss_pred ----------------------eeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceE--Eecccc-CC
Q 018591 250 ----------------------WKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLC--RVGAIT-GH 302 (353)
Q Consensus 250 ----------------------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~-~h 302 (353)
+.+...+.+|...|.+++++ | +||+|+.|++|++||+++..... .+..+. +|
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 543 LNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred ccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 12345667788888887764 8 99999999999999998765321 223554 89
Q ss_pred CcCeEEEEee-----cCCCCCCeEEEEccCCCeEEEEEc---CCCCCccc
Q 018591 303 EGPVKCLQAS-----PNAVGGGFLLYSGSLDKSLRVWWV---SKQSSTSD 344 (353)
Q Consensus 303 ~~~v~~~~~~-----~~~~~~~~~l~s~~~dg~i~iw~~---~~~~~~~~ 344 (353)
.+.|++++|+ ||... +.+|++|+.|++|++||+ .+++...+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~-~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYS-SILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSE-EEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred ccceEEEEEEEEecCCCCCc-ceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 9999999999 87110 489999999999999999 56554433
No 79
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.5e-37 Score=251.83 Aligned_cols=247 Identities=21% Similarity=0.292 Sum_probs=196.4
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
+++...+.+|...|++++|+ +.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+ +++|++++.|++|++|
T Consensus 66 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w 145 (343)
T 2xzm_R 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145 (343)
T ss_dssp EEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred ccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence 45678899999999999996 8899999999999999999999999999999999999998 7899999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC------------CeEEEecCCCc
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN------------GLIYSGSWDKT 149 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~l~~~~~dg~ 149 (353)
|+.... ...... ..+|...|.++.|+| .++++++.||.
T Consensus 146 d~~~~~-----~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 195 (343)
T 2xzm_R 146 NILGEC-----KFSSAE-------------------------KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195 (343)
T ss_dssp ESSSCE-----EEECCT-------------------------TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE
T ss_pred eccCCc-----eeeeec-------------------------ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE
Confidence 987432 110000 016888999999988 26999999999
Q ss_pred EEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591 150 LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK 227 (353)
Q Consensus 150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (353)
|++|| .+.+....+.+|...|.+++|+++ +|++++.||.|++||+..... ....+. +... |.+++|+|++.
T Consensus 196 i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~----~~~~~~-~~~~-v~~v~~sp~~~ 268 (343)
T 2xzm_R 196 LKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY----PQREFD-AGST-INQIAFNPKLQ 268 (343)
T ss_dssp EEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS----CSEEEE-CSSC-EEEEEECSSSC
T ss_pred EEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc----cceeec-CCCc-EEEEEECCCCC
Confidence 99999 456777888899999999999443 899999999999999954431 222332 2223 59999999998
Q ss_pred eEEeecCCCcEEEeeccccccceeeee---------eccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCC
Q 018591 228 WVYGGGSDGFVMGWEGNVEIVRWKLAC---------ETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~ 290 (353)
+++++ .|+.|++|++.+......... ...+|...+.+++++ +++|++|+.||.|++|+++++
T Consensus 269 ~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 269 WVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 77655 577899999987643221111 112566777777764 889999999999999998764
No 80
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=253.26 Aligned_cols=253 Identities=18% Similarity=0.243 Sum_probs=205.2
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCC--CceeeEEeccCceeeEEEEEe----CCEEEEecCCCc
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQP--DLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSR 77 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~ 77 (353)
|+++..+.+|.++|++++|+ +++|++|+.||.|++||+. +++.+..+..|...|.+++|+ +++|++++.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 46788999999999999996 8899999999999999997 667888899999999999996 789999999999
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEE
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVW 153 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iw 153 (353)
|++||++++... . ...+..|...|.+++|+| .++++++.|+.|++|
T Consensus 81 v~iwd~~~~~~~---~---------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~ 130 (379)
T 3jrp_A 81 VLIWKEENGRWS---Q---------------------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 130 (379)
T ss_dssp EEEEEEETTEEE---E---------------------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred EEEEEcCCCcee---E---------------------------eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEE
Confidence 999999876411 1 122236899999999997 489999999999999
Q ss_pred EcCCce--eeeeccccCcceEEEEEeC---------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce
Q 018591 154 RVADLK--CLESIKAHDDAVNGLVASK---------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS 216 (353)
Q Consensus 154 d~~~~~--~~~~~~~~~~~v~~i~~~~---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 216 (353)
|+++.. ....+..|...|.+++|.+ ..+++++.||.|++||++.... ...+...+.+|...+
T Consensus 131 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 131 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWV 209 (379)
T ss_dssp ECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCE
T ss_pred ecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-ceeeEEEEecccCcE
Confidence 998763 3445678999999999943 4899999999999999987651 122445667777765
Q ss_pred eeEEEEcCC---CCeEEeecCCCcEEEeeccccccce-eeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591 217 LNSVVVSDD---GKWVYGGGSDGFVMGWEGNVEIVRW-KLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 217 v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
.+++|+|+ +++|++++.||.|++||++.+.... ........|...+.++.+ ++++|++++.||.|++|++...
T Consensus 210 -~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 210 -RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp -EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred -eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99999999 8999999999999999998863221 223333446777777766 5889999999999999998743
No 81
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.3e-36 Score=250.48 Aligned_cols=290 Identities=10% Similarity=0.050 Sum_probs=207.8
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE-EEecCCCcE
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRI 78 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i 78 (353)
.+.+++..+.+|.++|++++|+ |++|++|+.|| +++||+.+++.......+. +..+.+. ++.+ ++++.|++|
T Consensus 7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp ------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSC--CCEEEECTTSSEEEEECSSTTEE
T ss_pred cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCC--eEEEEEcCCCCEEEEEECCccEE
Confidence 4566777889999999999996 88999988775 7899999888776655443 4445554 6665 578888999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCc
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~ 158 (353)
++||..+++ .+..+ .+...|.++.++++.++++. |+.|++||+.++
T Consensus 84 ~iWd~~~~~-----~~~~~----------------------------~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~ 129 (355)
T 3vu4_A 84 HIWDDVKKQ-----DVSRI----------------------------KVDAPVKDLFLSREFIVVSY-GDVISVFKFGNP 129 (355)
T ss_dssp EEEETTTTE-----EEEEE----------------------------ECSSCEEEEEECSSEEEEEE-TTEEEEEESSTT
T ss_pred EEEECCCCc-----EEEEE----------------------------ECCCceEEEEEcCCEEEEEE-cCEEEEEECCCC
Confidence 999998775 22221 46678999999997766654 789999999988
Q ss_pred -eeeeeccccCcceEEEEEeCCeEEE--EcCCCcEEEEeCCCCCcc----------cccc-eeeeeccCCceeeEEEEcC
Q 018591 159 -KCLESIKAHDDAVNGLVASKGIVYS--ASADGKIKAWGKELGKSH----------CHSL-KGILEGHKDVSLNSVVVSD 224 (353)
Q Consensus 159 -~~~~~~~~~~~~v~~i~~~~~~l~~--~~~dg~i~iwd~~~~~~~----------~~~~-~~~~~~~~~~~v~~~~~~~ 224 (353)
+.+..+.. +...+++.++.++. ++.||.|++||++++... ...+ ...+.+|...+ .+++|+|
T Consensus 130 ~~~~~~~~~---~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v-~~~~~s~ 205 (355)
T 3vu4_A 130 WKRITDDIR---FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI-KMVRLNR 205 (355)
T ss_dssp CCBSSCCEE---EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCE-EEEEECT
T ss_pred ceeeEEecc---CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce-EEEEECC
Confidence 77776655 33344455576666 588999999999875310 0011 56778888876 9999999
Q ss_pred CCCeEEeecCCCc-EEEeeccccccceeeeeecc-c-cceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceE--Eec
Q 018591 225 DGKWVYGGGSDGF-VMGWEGNVEIVRWKLACETK-A-HEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLC--RVG 297 (353)
Q Consensus 225 ~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~-~-~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~--~~~ 297 (353)
++++|++++.|++ |++||++++ +....+. + |...+.+++++ +++|++++.|++|++||++...... .+.
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~~----~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~ 281 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTEDG----VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK 281 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTTC----CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETT
T ss_pred CCCEEEEEeCCCCEEEEEECCCC----cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccc
Confidence 9999999999998 999999987 4455555 4 78888888775 8899999999999999997653110 100
Q ss_pred c------------------ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 298 A------------------ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 298 ~------------------~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
. ...+......++|+|+ +++|++++.||.+++|++..++..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d----~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 282 GWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE----SSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp TTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS----SEEEEEETTTTEEEEEEEEEETTT
T ss_pred ceeeccccccccceeEEEeccCCCCCceEEEEeCC----CCEEEEEeCCCeEEEEEEEcCCCC
Confidence 0 0112233477999999 999999999999999998875543
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.7e-37 Score=260.56 Aligned_cols=284 Identities=15% Similarity=0.185 Sum_probs=220.0
Q ss_pred ceEEEEECCc---EEEEEeCCCcEEEEeCCCc----eeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCc
Q 018591 18 SVSSLALCGE---FILSASQGKDIIVWQQPDL----RMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 18 ~v~~~~~~~~---~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
....++++++ ++++++.||.|+||++... +.+..+.+|.+.|.+++|+ +++|++++.||.|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3445677644 4445788999999998654 2345677899999999996 6799999999999999998764
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeec
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~ 164 (353)
... . .......+.+|...|.+++|+| .+|++++.||.|++||+++++.+..+
T Consensus 116 ~~~-----~--------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 116 LVL-----P--------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp CSS-----C--------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred Ccc-----c--------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence 110 0 0012334458999999999998 48999999999999999999999998
Q ss_pred --cccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeee-eccCCceeeEEEEcCCCCeEEee---cCCC
Q 018591 165 --KAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGIL-EGHKDVSLNSVVVSDDGKWVYGG---GSDG 236 (353)
Q Consensus 165 --~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg 236 (353)
..|...|.+++|++ ..+++++.||.|++||+++++ ....+ ..|....+..++|+|+++++++| +.|+
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-----VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence 78999999999943 489999999999999999887 55666 67777655999999999999999 8999
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEE-EecCCCeEEEEecCCCcc-eEEeccccCCCcCeEEEEee
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLC-SGSADKSIGIWKREAFGK-LCRVGAITGHEGPVKCLQAS 312 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-~~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~ 312 (353)
.|++||++......... ...+...+.++.+ ++++|+ +|+.||.|++||+.+++. ...+..+. |..+|.+++|+
T Consensus 246 ~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~s 322 (402)
T 2aq5_A 246 QVALWDTKHLEEPLSLQ--ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYM 322 (402)
T ss_dssp EEEEEETTBCSSCSEEE--ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEEC
T ss_pred eEEEEcCccccCCceEE--eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEe
Confidence 99999998864321111 1234444555554 577775 566899999999998774 33343333 67899999999
Q ss_pred cCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 313 PNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 313 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
|+ +.++++ .|+.+++|++.++.
T Consensus 323 p~----~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 323 PK----RGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CG----GGSCGG--GTEEEEEEEEETTE
T ss_pred cc----ccccee--cceeEEEEEcCCCc
Confidence 99 887764 56799999998754
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-37 Score=254.93 Aligned_cols=256 Identities=18% Similarity=0.213 Sum_probs=210.7
Q ss_pred ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591 46 LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123 (353)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (353)
|+++..+.+|...|.+++|+ +++|++++.||.|++||++..... . ...
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~---------------------------~~~ 50 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK---L---------------------------IDT 50 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE---E---------------------------EEE
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce---e---------------------------eeE
Confidence 34566788999999999998 889999999999999999744311 1 222
Q ss_pred eeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCce--eeeeccccCcceEEEEEe----CCeEEEEcCCCcEEEE
Q 018591 124 WIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLK--CLESIKAHDDAVNGLVAS----KGIVYSASADGKIKAW 193 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~----~~~l~~~~~dg~i~iw 193 (353)
+.+|...|++++|++ .+|++++.||.|++||+++++ .+..+..|...|.+++|. +..+++++.|+.|++|
T Consensus 51 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~ 130 (379)
T 3jrp_A 51 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 130 (379)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred ecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEE
Confidence 337999999999973 799999999999999999887 777888899999999993 4589999999999999
Q ss_pred eCCCCCcccccceeeeeccCCceeeEEEEcC-------------CCCeEEeecCCCcEEEeeccccccceeeeeeccccc
Q 018591 194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSD-------------DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE 260 (353)
Q Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 260 (353)
|++.... .....+..|...+ .+++|+| ++.++++++.||.|++||++.+.........+..|.
T Consensus 131 d~~~~~~---~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~ 206 (379)
T 3jrp_A 131 EFKENGT---TSPIIIDAHAIGV-NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 206 (379)
T ss_dssp ECCTTSC---CCEEEEECCTTCE-EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred ecCCCCc---eeeEEecCCCCce-EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence 9988741 1233455666665 9999999 699999999999999999988766666777788888
Q ss_pred eeEEEEEEc-----CcEEEEecCCCeEEEEecCCCcce--EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEE
Q 018591 261 MAVLCVCLV-----GEFLCSGSADKSIGIWKREAFGKL--CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV 333 (353)
Q Consensus 261 ~~v~~~~~~-----~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~i 333 (353)
..+.++.++ +++|++++.||.|++||+.+++.. ..+.....|...|++++|+|+ +++|++++.||.|++
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~dg~i~i 282 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGGDNKVTL 282 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS----SCCEEEEESSSSEEE
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC----CCEEEEecCCCcEEE
Confidence 888888775 679999999999999999986422 233344568899999999999 999999999999999
Q ss_pred EEcCCC
Q 018591 334 WWVSKQ 339 (353)
Q Consensus 334 w~~~~~ 339 (353)
|++...
T Consensus 283 w~~~~~ 288 (379)
T 3jrp_A 283 WKENLE 288 (379)
T ss_dssp EEEEET
T ss_pred EeCCCC
Confidence 999854
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.6e-36 Score=250.39 Aligned_cols=250 Identities=15% Similarity=0.198 Sum_probs=209.3
Q ss_pred CCCCceeeeeeC-ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEE
Q 018591 3 CKSHRSLAVLSG-HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIR 79 (353)
Q Consensus 3 ~~~~~~~~~l~~-h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 79 (353)
..+++....+.. |...|++++|+ +++|++|+.||.|++||+.+++.+..+..|...|.++.|+++.+++++.||.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 199 (401)
T 4aez_A 120 ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIH 199 (401)
T ss_dssp TTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred CCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEE
Confidence 356677777776 89999999996 889999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~ 157 (353)
+||++.... ....+.+|...|.+++|++ .++++|+.||.|++||+++
T Consensus 200 i~d~~~~~~-------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 200 HHDVRIANH-------------------------------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp EEETTSSSC-------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred EEecccCcc-------------------------------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 999985431 1223347999999999998 7999999999999999999
Q ss_pred ceeeeeccccCcceEEEEEeC---CeEEEEc--CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-
Q 018591 158 LKCLESIKAHDDAVNGLVASK---GIVYSAS--ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG- 231 (353)
Q Consensus 158 ~~~~~~~~~~~~~v~~i~~~~---~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 231 (353)
++++..+..|...|.+++|++ ..+++++ .|+.|++||+++++ ....+.. ... +.+++|+|+++++++
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-----~~~~~~~-~~~-v~~~~~s~~~~~l~~~ 321 (401)
T 4aez_A 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-----RVNTVDA-GSQ-VTSLIWSPHSKEIMST 321 (401)
T ss_dssp SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-----EEEEEEC-SSC-EEEEEECSSSSEEEEE
T ss_pred CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-----EEEEEeC-CCc-EEEEEECCCCCeEEEE
Confidence 999999999999999999944 2666655 79999999999887 5555543 333 599999999999999
Q ss_pred -ecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcc
Q 018591 232 -GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 232 -~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
|+.||.|++||+..+.. .....+.+|...+.++.+ ++.+|++++.||.|++|++.+++.
T Consensus 322 ~g~~dg~i~v~~~~~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 322 HGFPDNNLSIWSYSSSGL--TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp ECTTTCEEEEEEEETTEE--EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred eecCCCcEEEEecCCccc--eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 66899999999987532 233345678888877766 488999999999999999998774
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-35 Score=250.09 Aligned_cols=247 Identities=17% Similarity=0.281 Sum_probs=208.3
Q ss_pred CCCCceeeeee--CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcE
Q 018591 3 CKSHRSLAVLS--GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRI 78 (353)
Q Consensus 3 ~~~~~~~~~l~--~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 78 (353)
..+++.++.+. +|.+.|++|+|+ |++|++|+.||+|++||+++++.+..+.+|...+.++.+++..|++|+.|+.+
T Consensus 132 ~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i 211 (420)
T 4gga_A 132 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI 211 (420)
T ss_dssp TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred CCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCce
Confidence 35677776654 678899999996 89999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~ 156 (353)
++||....... ...+.+|...+..+.+.+ .++++++.|+.+++||..
T Consensus 212 ~~~d~~~~~~~-------------------------------~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 212 HHHDVRVAEHH-------------------------------VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp EEEETTSSSCE-------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred eEeeeccccee-------------------------------eEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 99998765421 223347999999999998 899999999999999998
Q ss_pred Cce----eeeeccccCcceEEEEEeC---CeEEE--EcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591 157 DLK----CLESIKAHDDAVNGLVASK---GIVYS--ASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK 227 (353)
Q Consensus 157 ~~~----~~~~~~~~~~~v~~i~~~~---~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (353)
+++ .+.....|...|.+++|.+ +.+++ |+.|++|++||+.++. ....+..+.. +.++.|+|+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-----~~~~~~~~~~--v~~~~~~~~~~ 333 (420)
T 4gga_A 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----CLSAVDAHSQ--VCSILWSPHYK 333 (420)
T ss_dssp CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-----EEEEEECSSC--EEEEEEETTTT
T ss_pred cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-----cceeeccccc--eeeeeecCCCC
Confidence 765 3455677899999999933 35554 5679999999999987 5555555543 48999999999
Q ss_pred eEEeec--CCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCc
Q 018591 228 WVYGGG--SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 228 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
.+++++ .|+.|++||+.++ +....+.+|...|.+++++ |++|++|+.|++|++||+....
T Consensus 334 ~lv~~sg~~d~~I~iwd~~~~----~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYPTM----AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEEECTTTCCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred eEEEEEecCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 887754 7999999999987 5677788999999988874 8899999999999999998755
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=258.25 Aligned_cols=264 Identities=12% Similarity=0.160 Sum_probs=205.5
Q ss_pred EEeCCCceeeEEe-ccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEe
Q 018591 40 VWQQPDLRMFTKF-GHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQ 115 (353)
Q Consensus 40 vwd~~~~~~~~~~-~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
.|+ .+++.+..+ .+|.+.|.+++|+ +++|++|+.||+|++||+.+..... ..
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~--------------------- 102 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--VY--------------------- 102 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--CC---------------------
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--cc---------------------
Confidence 488 567888888 8999999999997 4699999999999999997722100 00
Q ss_pred ecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC---Cceeeeecc----------c--cCcceEEEEE--
Q 018591 116 TRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA---DLKCLESIK----------A--HDDAVNGLVA-- 176 (353)
Q Consensus 116 ~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~---~~~~~~~~~----------~--~~~~v~~i~~-- 176 (353)
......+|...|.+++|++ ++|++|+.||.|++||++ +++....+. . +...+.++.+
T Consensus 103 ----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 178 (437)
T 3gre_A 103 ----SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV 178 (437)
T ss_dssp ----SCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE
T ss_pred ----ceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE
Confidence 0001116899999999999 889999999999999995 444333322 1 4556677764
Q ss_pred e--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeec--cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceee
Q 018591 177 S--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEG--HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKL 252 (353)
Q Consensus 177 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 252 (353)
. +..+++++.|+.|++||+++++ ....+.. |...+ .+++|+|++++|++++.||.|++||++.+ ..
T Consensus 179 ~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~ 248 (437)
T 3gre_A 179 NEEKSLLVALTNLSRVIIFDIRTLE-----RLQIIENSPRHGAV-SSICIDEECCVLILGTTRGIIDIWDIRFN----VL 248 (437)
T ss_dssp CSSCEEEEEEETTSEEEEEETTTCC-----EEEEEECCGGGCCE-EEEEECTTSCEEEEEETTSCEEEEETTTT----EE
T ss_pred cCCCCEEEEEeCCCeEEEEeCCCCe-----eeEEEccCCCCCce-EEEEECCCCCEEEEEcCCCeEEEEEcCCc----cE
Confidence 2 4499999999999999999987 6677776 55654 99999999999999999999999999987 44
Q ss_pred eeecc-ccceeEEEEEEc------CcEEEEecCCCeEEEEecCCCcceEEec---------------------cccC--C
Q 018591 253 ACETK-AHEMAVLCVCLV------GEFLCSGSADKSIGIWKREAFGKLCRVG---------------------AITG--H 302 (353)
Q Consensus 253 ~~~~~-~~~~~v~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~---------------------~~~~--h 302 (353)
...+. .|...+.++.+. +.+|++|+.||.|++||+++++....+. .+.+ |
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 44443 667788888543 5699999999999999999876333222 1122 7
Q ss_pred CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
...|++++|+ + +++|++|+.||.|++||+.+++......
T Consensus 329 ~~~v~~l~~~-~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 329 LNALSTISVS-N----DKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp GGGGCCEEEE-T----TEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred CCceEEEEEC-C----ceEEEecCCCCeEEEEECCCcccceEEe
Confidence 7789999999 6 7999999999999999999988776544
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-36 Score=251.12 Aligned_cols=254 Identities=18% Similarity=0.218 Sum_probs=208.1
Q ss_pred CCceeeeeeC-----ccCceEEEEEC------CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEE
Q 018591 5 SHRSLAVLSG-----HVGSVSSLALC------GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVF 70 (353)
Q Consensus 5 ~~~~~~~l~~-----h~~~v~~~~~~------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~ 70 (353)
+++.+..+.. |...|++++|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+ +++|+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 132 (366)
T 3k26_A 53 SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 132 (366)
T ss_dssp GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEE
T ss_pred CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEE
Confidence 4555556654 55789999995 4699999999999999999999999999999999999996 67999
Q ss_pred EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC
Q 018591 71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK 148 (353)
Q Consensus 71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg 148 (353)
+++.||.|++||+++++ .+..+.. +.+|...|.+++|+| +++++++.||
T Consensus 133 s~~~dg~i~iwd~~~~~-----~~~~~~~------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg 183 (366)
T 3k26_A 133 SVSKDHALRLWNIQTDT-----LVAIFGG------------------------VEGHRDEVLSADYDLLGEKIMSCGMDH 183 (366)
T ss_dssp EEETTSCEEEEETTTTE-----EEEEECS------------------------TTSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEeCCCeEEEEEeecCe-----EEEEecc------------------------cccccCceeEEEECCCCCEEEEecCCC
Confidence 99999999999998765 2211100 026899999999998 7999999999
Q ss_pred cEEEEEcCCceeeeeccc----------------------------cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCc
Q 018591 149 TLKVWRVADLKCLESIKA----------------------------HDDAVNGLVASKGIVYSASADGKIKAWGKELGKS 200 (353)
Q Consensus 149 ~v~iwd~~~~~~~~~~~~----------------------------~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~ 200 (353)
.|++||+++++....+.. |...|.+++|.++.+++++.|+.|++||+++...
T Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTC
T ss_pred CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccc
Confidence 999999998766555443 8999999999988999999999999999987652
Q ss_pred c---------cccceeeeeccCCceeeEEEEcCC--CCeEEeecCCCcEEEeeccccccceeeeeecccc--ceeEEEEE
Q 018591 201 H---------CHSLKGILEGHKDVSLNSVVVSDD--GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH--EMAVLCVC 267 (353)
Q Consensus 201 ~---------~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~ 267 (353)
. .......+..|...+ .+++|+|+ +++|++++.||.|++||+..+.........+..| ...+.++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 342 (366)
T 3k26_A 264 DIDKIKPSESNVTILGRFDYSQCDI-WYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTS 342 (366)
T ss_dssp CGGGCCTTCCCEEEEEEEECSSCCS-SCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEE
T ss_pred cccccccCCcchheeccccccCCcE-EEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEE
Confidence 1 112355666777665 99999999 9999999999999999999875544444556666 67888887
Q ss_pred Ec--CcEEEEecCCCeEEEEecC
Q 018591 268 LV--GEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 268 ~~--~~~l~~~~~dg~i~iw~~~ 288 (353)
++ +++|++++.||.|++||+.
T Consensus 343 ~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 343 FSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC-
T ss_pred eCCCCCeEEEEeCCCEEEEEEec
Confidence 74 8899999999999999975
No 88
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.5e-35 Score=266.85 Aligned_cols=290 Identities=17% Similarity=0.225 Sum_probs=236.5
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRI 78 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i 78 (353)
..+++.+..+.+|.++|++++|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+ +.+|++++.||.|
T Consensus 42 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 121 (814)
T 3mkq_A 42 YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121 (814)
T ss_dssp TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred CCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEE
Confidence 45788899999999999999996 8899999999999999999999999999999999999998 7799999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEc
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~ 155 (353)
++||++++.. . ...+.+|...|.+++|+| ..+++++.||.|++||+
T Consensus 122 ~vw~~~~~~~----~---------------------------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 122 KLWNWENNWA----L---------------------------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp EEEEGGGTSE----E---------------------------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred EEEECCCCce----E---------------------------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 9999987631 1 222337999999999998 68999999999999999
Q ss_pred CCceeeeeccccC-cceEEEEEeC----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591 156 ADLKCLESIKAHD-DAVNGLVASK----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY 230 (353)
Q Consensus 156 ~~~~~~~~~~~~~-~~v~~i~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 230 (353)
.+++....+..+. ..+.+++|.+ ..+++++.||.|++||+++++ ....+.+|...+ .+++|+|++++++
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~~~~~~~~~v-~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVATLEGHMSNV-SFAVFHPTLPIII 244 (814)
T ss_dssp TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----EEEEEECCSSCE-EEEEECSSSSEEE
T ss_pred CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----EEEEEcCCCCCE-EEEEEcCCCCEEE
Confidence 8888777776554 8899999943 389999999999999999887 677777887765 9999999999999
Q ss_pred eecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--Cc--EEEEecCCCeEEEEecCCCcceEEe----------
Q 018591 231 GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GE--FLCSGSADKSIGIWKREAFGKLCRV---------- 296 (353)
Q Consensus 231 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~iw~~~~~~~~~~~---------- 296 (353)
+++.||.|++||+.++ .....+..+...+.+++++ +. +++++ .++.+.+|++........+
T Consensus 245 ~~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 319 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSG 319 (814)
T ss_dssp EEETTSCEEEEETTTC----SEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEEC
T ss_pred EEeCCCeEEEEECCCC----cEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEEC
Confidence 9999999999999887 4555666677778888775 44 35554 5666888887643211000
Q ss_pred ------------------------------ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 297 ------------------------------GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 297 ------------------------------~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
..+..+...+.+++|+|+ +++|++++ ||.+.+|++...
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~la~~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 320 GKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPN----GRFVTVVG-DGEYVIYTALAW 387 (814)
T ss_dssp CTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTT----SSEEEEEE-TTEEEEEETTTT
T ss_pred cccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCC----CCEEEEec-CCEEEEEECccc
Confidence 111334556889999998 88888887 888999987543
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=235.33 Aligned_cols=247 Identities=21% Similarity=0.276 Sum_probs=206.9
Q ss_pred CceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591 45 DLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123 (353)
Q Consensus 45 ~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (353)
..+....+.+|.+.|.+++|. +++|++++.||.|++||++++. . ...
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-----~---------------------------~~~ 54 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQW-----L---------------------------GTV 54 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSE-----E---------------------------EEE
T ss_pred cHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCE-----E---------------------------EEE
Confidence 347788899999999999987 8899999999999999997654 1 222
Q ss_pred eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc---eeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCC
Q 018591 124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL---KCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELG 198 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~ 198 (353)
+..|...|.+++|+| .++++++.||.|++|++... +.+..+..|...|.++.+.++.+++++.||.|++|| ..
T Consensus 55 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~ 132 (313)
T 3odt_A 55 VYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG 132 (313)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT
T ss_pred eecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC
Confidence 337899999999999 89999999999999998654 567778899999999999888999999999999999 33
Q ss_pred CcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEEc--CcEEE
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLV--GEFLC 274 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~ 274 (353)
+ ....+..|...+ .++++.| +++++++++.||.|++||... ....+.. +...+.++.++ +. ++
T Consensus 133 ~-----~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~i~~~~~~~~~~-~~ 199 (313)
T 3odt_A 133 S-----LVYNLQAHNASV-WDAKVVSFSENKFLTASADKTIKLWQNDK------VIKTFSGIHNDVVRHLAVVDDGH-FI 199 (313)
T ss_dssp E-----EEEEEECCSSCE-EEEEEEETTTTEEEEEETTSCEEEEETTE------EEEEECSSCSSCEEEEEEEETTE-EE
T ss_pred c-----EEEecccCCCce-eEEEEccCCCCEEEEEECCCCEEEEecCc------eEEEEeccCcccEEEEEEcCCCe-EE
Confidence 3 566777777766 8999988 899999999999999999443 2233333 66677777664 55 99
Q ss_pred EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
+++.||.|++||+++++ .+..+.+|...|++++|+|+ + .|++++.||.|++||+.+++......
T Consensus 200 ~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~----~-~l~~~~~dg~v~iwd~~~~~~~~~~~ 263 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTGD---VLRTYEGHESFVYCIKLLPN----G-DIVSCGEDRTVRIWSKENGSLKQVIT 263 (313)
T ss_dssp EEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTT----S-CEEEEETTSEEEEECTTTCCEEEEEE
T ss_pred EccCCCeEEEEECCchh---hhhhhhcCCceEEEEEEecC----C-CEEEEecCCEEEEEECCCCceeEEEe
Confidence 99999999999999887 66777899999999999999 7 68999999999999999988766554
No 90
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.9e-35 Score=239.37 Aligned_cols=257 Identities=21% Similarity=0.304 Sum_probs=208.0
Q ss_pred CCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccc
Q 018591 43 QPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRH 119 (353)
Q Consensus 43 ~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (353)
.++.++..++.+|.+.|++++|+ +++|+||+.||+|++||+...+......
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~-------------------------- 78 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP-------------------------- 78 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEE--------------------------
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccee--------------------------
Confidence 34456677899999999999997 5789999999999999998765322222
Q ss_pred ceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeC
Q 018591 120 HKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGK 195 (353)
Q Consensus 120 ~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~ 195 (353)
...+.+|...|.++.|+| .+|++++.|+.|++|+............+...+..+.+ .+..+++++.|+.+++||.
T Consensus 79 -~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~ 157 (340)
T 4aow_A 79 -QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157 (340)
T ss_dssp -EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred -eEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence 233448999999999999 89999999999999999998888888888888888888 3448999999999999998
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCC--CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--Cc
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDG--KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GE 271 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 271 (353)
.... .......+|...+ ..++|++++ .++++++.|+.|++||++.. .....+.+|...|.+++++ ++
T Consensus 158 ~~~~----~~~~~~~~~~~~v-~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 158 LGVC----KYTVQDESHSEWV-SCVRFSPNSSNPIIVSCGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGS 228 (340)
T ss_dssp TSCE----EEEECSSSCSSCE-EEEEECSCSSSCEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCc----eEEEEeccccCcc-cceEEccCCCCcEEEEEcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCCC
Confidence 8665 1334445566655 899998864 57889999999999999988 5666777888889888774 88
Q ss_pred EEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 272 FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 272 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
+|++|+.||.|++||+++.+ .+..+.. ...|.++.|+|+ +. +++++.|+.|++||++.+..+..
T Consensus 229 ~l~s~s~Dg~i~iwd~~~~~---~~~~~~~-~~~v~~~~~~~~----~~-~~~~~~d~~i~iwd~~~~~~~~~ 292 (340)
T 4aow_A 229 LCASGGKDGQAMLWDLNEGK---HLYTLDG-GDIINALCFSPN----RY-WLCAATGPSIKIWDLEGKIIVDE 292 (340)
T ss_dssp EEEEEETTCEEEEEETTTTE---EEEEEEC-SSCEEEEEECSS----SS-EEEEEETTEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCeEEEEEeccCc---eeeeecC-CceEEeeecCCC----Cc-eeeccCCCEEEEEECCCCeEEEe
Confidence 99999999999999999876 4444554 468999999997 55 55666799999999987765443
No 91
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.1e-35 Score=262.56 Aligned_cols=254 Identities=22% Similarity=0.316 Sum_probs=206.3
Q ss_pred eeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591 48 MFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124 (353)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (353)
....+.+|...|++++++ +++|++|+.||+|++|++......... ..+.+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~---------------------------~~~~~ 426 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV---------------------------AQRRL 426 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE---------------------------EEEEE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc---------------------------cccee
Confidence 445688999999999997 468999999999999999765421111 12334
Q ss_pred eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCc
Q 018591 125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKS 200 (353)
Q Consensus 125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~ 200 (353)
.+|...|.+++|++ ++|++|+.||.|++||+.+++.+..+.+|...|.+++|++ ..+++++.|++|++||......
T Consensus 427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence 58999999999999 8999999999999999999999999999999999999943 3899999999999999865431
Q ss_pred ccccceeeeeccCCceeeEEEEcCCC--CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEe
Q 018591 201 HCHSLKGILEGHKDVSLNSVVVSDDG--KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSG 276 (353)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 276 (353)
........+|...+ .+++|+|++ ..+++++.|+.|++||++.. .....+.+|...+.+++++ +++|++|
T Consensus 507 --~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~sg 579 (694)
T 3dm0_A 507 --YTISEGGEGHRDWV-SCVRFSPNTLQPTIVSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPDGSLCASG 579 (694)
T ss_dssp --EEECSSTTSCSSCE-EEEEECSCSSSCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred --eeeccCCCCCCCcE-EEEEEeCCCCcceEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 01111223566655 999999986 57999999999999999887 5566778899888888775 8899999
Q ss_pred cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 277 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
+.||.|++||+.+++ .+..+. +...|.+++|+|+ +.+|++++ |+.|++||+++++.+..
T Consensus 580 ~~Dg~i~iwd~~~~~---~~~~~~-~~~~v~~~~~sp~----~~~l~~~~-~~~i~iwd~~~~~~~~~ 638 (694)
T 3dm0_A 580 GKDGVVLLWDLAEGK---KLYSLE-ANSVIHALCFSPN----RYWLCAAT-EHGIKIWDLESKSIVED 638 (694)
T ss_dssp ETTSBCEEEETTTTE---EEECCB-CSSCEEEEEECSS----SSEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred eCCCeEEEEECCCCc---eEEEec-CCCcEEEEEEcCC----CcEEEEEc-CCCEEEEECCCCCChhh
Confidence 999999999999877 444454 4567999999999 88887775 55699999998876543
No 92
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.3e-35 Score=246.51 Aligned_cols=260 Identities=17% Similarity=0.187 Sum_probs=210.1
Q ss_pred eeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591 48 MFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127 (353)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
....+.+|...|.+++|++++|++++.||.|++|++++..... . ......+.+|
T Consensus 8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-----~---------------------~~~~~~~~~h 61 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNEN-----P---------------------KDKSYSHFVH 61 (397)
T ss_dssp EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCC-----G---------------------GGGEEEEECC
T ss_pred hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccccc-----C---------------------CCcceEEecC
Confidence 4556789999999999999999999999999999998765100 0 0112333479
Q ss_pred CCceEEEEEeC---------CeEEEecCCCcEEEEEcCCcee-----eeecccc-----CcceEEEEEe----CC--e-E
Q 018591 128 ADSISCLTVYN---------GLIYSGSWDKTLKVWRVADLKC-----LESIKAH-----DDAVNGLVAS----KG--I-V 181 (353)
Q Consensus 128 ~~~i~~~~~~~---------~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~-----~~~v~~i~~~----~~--~-l 181 (353)
...|.+++|++ .+|++++.||.|++||+.+++. ...+..| ...|.+++|. ++ . +
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 141 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 141 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEE
Confidence 99999999985 4799999999999999998876 7888888 5899999997 44 7 9
Q ss_pred EEEcCCCcEEEEeCCC------CCcccccceeeee-------ccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc
Q 018591 182 YSASADGKIKAWGKEL------GKSHCHSLKGILE-------GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV 248 (353)
Q Consensus 182 ~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 248 (353)
++++.||.|++||++. .+.........+. .|... +.+++|+|++ ++++++.||.|++||+++.
T Consensus 142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-- 217 (397)
T 1sq9_A 142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF-ATSVDISERG-LIATGFNNGTVQISELSTL-- 217 (397)
T ss_dssp EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC-CCEEEECTTS-EEEEECTTSEEEEEETTTT--
T ss_pred EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC-ceEEEECCCc-eEEEEeCCCcEEEEECCCC--
Confidence 9999999999999988 4421111111442 34554 4999999999 9999999999999999987
Q ss_pred ceeeeeeccc---c---ceeEEEEEE--cCcEEEEecCC---CeEEEEecCCCcceEEeccccC-------------CCc
Q 018591 249 RWKLACETKA---H---EMAVLCVCL--VGEFLCSGSAD---KSIGIWKREAFGKLCRVGAITG-------------HEG 304 (353)
Q Consensus 249 ~~~~~~~~~~---~---~~~v~~~~~--~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~-------------h~~ 304 (353)
.....+.. | ...+.++.+ ++++|++++.| |.|++||+.+++ .+..+.+ |..
T Consensus 218 --~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 218 --RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE---RIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp --EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC---EEEEECBC--------CCBSBSS
T ss_pred --ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc---ccceeccCcccccccccccccCC
Confidence 45555555 7 778888777 48899999999 999999999877 5566677 999
Q ss_pred CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 305 ~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
.|.+++|+|+ +++|++++.||.|++||+.+++.+....
T Consensus 293 ~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 293 WVMSLSFNDS----GETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp CEEEEEECSS----SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred cEEEEEECCC----CCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 9999999999 9999999999999999999887776654
No 93
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=254.80 Aligned_cols=228 Identities=14% Similarity=0.055 Sum_probs=176.0
Q ss_pred EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCC--------
Q 018591 68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNG-------- 139 (353)
Q Consensus 68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------- 139 (353)
.+++++.|++|++|++++++.... . ...+.+|.+.|.+++|+|.
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~-~---------------------------~~~l~~~~~~V~~v~wsp~~~~~~~~~ 226 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCV-K---------------------------VQTIVHSFGEVWDLKWHEGCHAPHLVG 226 (524)
T ss_dssp -------CEEEEEEEEETTTCCEE-E---------------------------EEEEEECCCSEEEEEECSSCCCSSSSC
T ss_pred hhccCCCCceEEEEEccCCCCCce-E---------------------------EEEEEecCCcEEEEEECCCCCCCCCCc
Confidence 456677899999999987652110 0 1112367889999999973
Q ss_pred eEEEecCCCcEEEEEcCCcee-----------eeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591 140 LIYSGSWDKTLKVWRVADLKC-----------LESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 140 ~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
+|++++.||+|++||+.+++. ...+.+|...|++++| +++.|++|+.||+|++||++++. .+..
T Consensus 227 ~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~----~~~~ 302 (524)
T 2j04_B 227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE----VPSF 302 (524)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS----SCSE
T ss_pred eEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC----CceE
Confidence 899999999999999976532 2356789999999999 55699999999999999998764 1445
Q ss_pred eeeccCCceeeEE--EEcCCC-CeEEeecCCCcEEEeeccccccceeeeeeccccce--eE--EEEEEcCcEEEEecCCC
Q 018591 208 ILEGHKDVSLNSV--VVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM--AV--LCVCLVGEFLCSGSADK 280 (353)
Q Consensus 208 ~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v--~~~~~~~~~l~~~~~dg 280 (353)
.+.+|...+ .++ +|+|++ .+|++++.|++|++||+++..... .+.+|.. .+ .+++|+++.+++++.|+
T Consensus 303 ~~~~H~~~V-~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~----~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~ 377 (524)
T 2j04_B 303 YDQVHDSYI-LSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK----TTVSRFRGSNLVPVVYCPQIYSYIYSDGAS 377 (524)
T ss_dssp EEECSSSCE-EEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC----EEEEECSCCSCCCEEEETTTTEEEEECSSS
T ss_pred EeecccccE-EEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc----ccccccccCcccceEeCCCcCeEEEeCCCC
Confidence 677888776 888 578887 899999999999999998874332 2223321 23 45666688999999999
Q ss_pred eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 281 SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 281 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
+|++||++++. .+..+.+|.+.|++++|+|+ +++|++|+.||+|++|++...
T Consensus 378 tv~lwd~~~~~---~~~~l~gH~~~V~sva~Sp~----g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 378 SLRAVPSRAAF---AVHPLVSRETTITAIGVSRL----HPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEEEETTCTT---CCEEEEECSSCEEEEECCSS----CCBCEEEETTTEEECCBSCSS
T ss_pred cEEEEECcccc---cceeeecCCCceEEEEeCCC----CCeEEEEECCCEEEEEechHh
Confidence 99999999876 45567789999999999999 999999999999999998653
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-34 Score=241.94 Aligned_cols=280 Identities=14% Similarity=0.123 Sum_probs=214.2
Q ss_pred CceEEEEEC--CcEEEEEeCCCcEEEEeCCCce---eeEEeccC------------------------------------
Q 018591 17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLR---MFTKFGHG------------------------------------ 55 (353)
Q Consensus 17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~------------------------------------ 55 (353)
.++.+++|+ |++|+++ .++.|++||+.+++ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999996 7766655 57899999999998 66555433
Q ss_pred ------------------ceeeEEEEEe--CCEE-EEecCCCcEEEEEcc--cCccceeEEeeccccccceeeeecccce
Q 018591 56 ------------------DGSVKAVVTV--GNKV-FTAHQDSRIRVWKVS--RSSENVFRLVDTLPTTKDYLGKFMKQSN 112 (353)
Q Consensus 56 ------------------~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (353)
.+.|.+++|+ +++| ++++.||.|++||+. ++.. ...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~--~~~~~~---------------- 145 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--LKLRKR---------------- 145 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC--EEEEEE----------------
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce--eeeeec----------------
Confidence 2369999998 6775 899999999999998 5431 111110
Q ss_pred eEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee----eccccCcceEEEEE-eC---C-eE
Q 018591 113 YVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE----SIKAHDDAVNGLVA-SK---G-IV 181 (353)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~i~~-~~---~-~l 181 (353)
..|...|.+++|+| .+|++|+.+|.|++|++.+++... .+.+|...|++++| ++ + ++
T Consensus 146 ------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 213 (450)
T 2vdu_B 146 ------------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFI 213 (450)
T ss_dssp ------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEE
T ss_pred ------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEE
Confidence 15778999999999 799999999999999998877554 77889999999999 33 3 89
Q ss_pred EEEcCCCcEEEEeCCCCCcccccceee-eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec----
Q 018591 182 YSASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET---- 256 (353)
Q Consensus 182 ~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 256 (353)
++++.|+.|++||+++++ .... +.+|...+ .+++|+ ++++|++++.|+.|++||+.++..........
T Consensus 214 ~s~~~d~~i~vwd~~~~~-----~~~~~~~~h~~~v-~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 286 (450)
T 2vdu_B 214 ITSDRDEHIKISHYPQCF-----IVDKWLFGHKHFV-SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP 286 (450)
T ss_dssp EEEETTSCEEEEEESCTT-----CEEEECCCCSSCE-EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGG
T ss_pred EEEcCCCcEEEEECCCCc-----eeeeeecCCCCce-EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhh
Confidence 999999999999999876 4444 55777665 999999 99999999999999999999874332221100
Q ss_pred -----------------cccceeEEEEEE--cCcEEEEec-CCCeEEEEec--CCCcceEEeccccCCCcCeEEEEeecC
Q 018591 257 -----------------KAHEMAVLCVCL--VGEFLCSGS-ADKSIGIWKR--EAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 257 -----------------~~~~~~v~~~~~--~~~~l~~~~-~dg~i~iw~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
......+.++.+ ++++|++++ .++.|++|++ ..+..+..+..+..| +.|.+++|+|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp GCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred hhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 012234555555 588999888 8999999999 555445567777777 88999999997
Q ss_pred CCCCCeEEEEccC------CCeEEEEEcCCC
Q 018591 315 AVGGGFLLYSGSL------DKSLRVWWVSKQ 339 (353)
Q Consensus 315 ~~~~~~~l~s~~~------dg~i~iw~~~~~ 339 (353)
+.++++++. +..|.+|.+...
T Consensus 366 ----~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 366 ----EFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp ----EEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred ----cEEEEEecccCCCCCCcceEEEEEEcC
Confidence 666666554 556899987643
No 95
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2e-34 Score=227.10 Aligned_cols=291 Identities=15% Similarity=0.083 Sum_probs=198.1
Q ss_pred CCceeeeeeCccC----ceEEEEEC----Cc-EEEEEeCCCcEEEEeCCCc---eeeEEeccCceeeEEEEEeC---CEE
Q 018591 5 SHRSLAVLSGHVG----SVSSLALC----GE-FILSASQGKDIIVWQQPDL---RMFTKFGHGDGSVKAVVTVG---NKV 69 (353)
Q Consensus 5 ~~~~~~~l~~h~~----~v~~~~~~----~~-~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~---~~l 69 (353)
..+++..|+...+ .+.++-|. .+ -+++++. ..|++|+..++ +.+.++..|+.+|..+.+.+ +.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence 3456677776544 34555553 22 5666665 69999999998 89999999999999999873 333
Q ss_pred EEecCCCcE-EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec---
Q 018591 70 FTAHQDSRI-RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS--- 145 (353)
Q Consensus 70 ~s~~~dg~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~--- 145 (353)
..+-.+=.+ .++.+.-... ...+ . ....-.+|...|..+ ....++..+
T Consensus 103 ~~~~~~~~~~~v~sla~spd-----------~~~~-------~--------~~l~s~g~~~~v~~l--~~g~lv~ss~~g 154 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSD-----------DESE-------K--------QVLLKSGNIKAVLGL--TKRRLVSSSGTL 154 (356)
T ss_dssp EEEECSSSEEEEEEECC-----------------C-------C--------EEEEEEEEEEEEEEE--TTTEEEEEESSS
T ss_pred eeeeccccccceEEEEECCC-----------cccc-------c--------cEEEeCCCeEEEEec--CCCcEEEecccC
Confidence 222211111 1121111100 0000 0 000001344444443 335555553
Q ss_pred CCCcEEEEEc-CCceeeeeccccCcceEEEEEeC-----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC--cee
Q 018591 146 WDKTLKVWRV-ADLKCLESIKAHDDAVNGLVASK-----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD--VSL 217 (353)
Q Consensus 146 ~dg~v~iwd~-~~~~~~~~~~~~~~~v~~i~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~v 217 (353)
.|+.|++|++ .+++.+..+..|...+..++|++ ..|++++.|++|++||+++++ +...+.+|.. ..+
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-----~l~tL~g~~~~v~~v 229 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-----LLKKMHIDDSYQASV 229 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-----EEEEEECCC---CCC
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-----EEEEEcCCCcceeee
Confidence 5999999999 55888888888998888888833 499999999999999999998 7777776543 234
Q ss_pred eEEEEcCCCCeE------------EeecCCCcEEEeeccccccceeeeee-ccccceeEEEEEEcCcEEEEecCCCeEEE
Q 018591 218 NSVVVSDDGKWV------------YGGGSDGFVMGWEGNVEIVRWKLACE-TKAHEMAVLCVCLVGEFLCSGSADKSIGI 284 (353)
Q Consensus 218 ~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~~~~~dg~i~i 284 (353)
.+++|+|++.++ ++|+.|++|++||..++......... ..+|.....+.++++.++++|+.|++|+|
T Consensus 230 ~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkI 309 (356)
T 2w18_A 230 CHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAI 309 (356)
T ss_dssp EEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEE
T ss_pred EEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEE
Confidence 678999999876 56788999999999987432221111 23566566677777899999999999999
Q ss_pred EecCCCcceEEeccccCCCcCeE-EEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 285 WKREAFGKLCRVGAITGHEGPVK-CLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 285 w~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
||+.+++ .+.++.+|...+. .++|+|+ |++|++|+.|++|+|||+
T Consensus 310 WDl~tGk---~l~tL~gH~~~vvs~vafSPD----G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 310 WDLLLGQ---CTALLPPVSDQHWSFVKWSGT----DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EETTTCS---EEEEECCC--CCCCEEEECSS----SSEEEEECTTSCEEEEEE
T ss_pred EECCCCc---EEEEecCCCCCeEEEEEECCC----CCEEEEEECCCcEEEecC
Confidence 9999988 7778888987655 6899999 999999999999999986
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=264.89 Aligned_cols=250 Identities=18% Similarity=0.250 Sum_probs=200.2
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCC--CceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEE
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQP--DLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRV 80 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~ 80 (353)
+..+.+|.++|++++|+ +++|++|+.||.|++||+. +++.+..+.+|.+.|.+++|+ +++|++++.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 46789999999999996 8899999999999999987 667888899999999999996 679999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcC
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~ 156 (353)
||+.++... . ...+.+|...|.+++|+| ..+++|+.||.|++||++
T Consensus 82 wd~~~~~~~---~---------------------------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 82 WKEENGRWS---Q---------------------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEETTEEE---E---------------------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EECCCCccc---c---------------------------cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 999876411 1 122237999999999997 489999999999999998
Q ss_pred Cce--eeeeccccCcceEEEEEeC---------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591 157 DLK--CLESIKAHDDAVNGLVASK---------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS 219 (353)
Q Consensus 157 ~~~--~~~~~~~~~~~v~~i~~~~---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (353)
++. ....+.+|...|.+++|.+ ..+++++.||.|++||++++.. ...+...+.+|...+ .+
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~h~~~V-~~ 209 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWV-RD 209 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCE-EE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-cceeeeeecCCCCcE-EE
Confidence 763 3455678999999999943 4899999999999999987741 123455667787766 99
Q ss_pred EEEcCC---CCeEEeecCCCcEEEeeccccccce-eeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591 220 VVVSDD---GKWVYGGGSDGFVMGWEGNVEIVRW-KLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 220 ~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
++|+|+ ++++++++.||.|++||+..+.... ........|...+.++.+ +++++++|+.||.|++|++...
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 999999 8999999999999999998863221 123333456667766655 5889999999999999999853
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-34 Score=239.31 Aligned_cols=249 Identities=13% Similarity=0.119 Sum_probs=205.4
Q ss_pred eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEE--eccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTK--FGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
++..+.+|...|++++|+ +++|++++.||.|++||+.+++.... +..|...|.+++|+ +++|++++.||.|++|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 788999999999999996 88999999999999999988875544 36788999999998 7899999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc----
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV---- 155 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~---- 155 (353)
|++....... .. ....+|...|.+++|+| .++++++.||.|++||+
T Consensus 124 d~~~~~~~~~--~~--------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 175 (372)
T 1k8k_C 124 YFEQENDWWV--CK--------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 175 (372)
T ss_dssp EEETTTTEEE--EE--------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred EecCCCccee--ee--------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc
Confidence 9987652111 11 11126889999999998 78999999999999995
Q ss_pred --------------CCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591 156 --------------ADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS 219 (353)
Q Consensus 156 --------------~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (353)
..++++..+..|...|.+++|++ ..+++++.|+.|++||+++++ ....+..|...+ .+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v-~~ 249 (372)
T 1k8k_C 176 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM-----AVATLASETLPL-LA 249 (372)
T ss_dssp TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-----EEEEEECSSCCE-EE
T ss_pred ccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----eeEEEccCCCCe-EE
Confidence 36788888989999999999943 399999999999999999887 677777777665 99
Q ss_pred EEEcCCCCeEEeecCCCcEEEeeccc--cccc----------------------------eeee------eec-ccccee
Q 018591 220 VVVSDDGKWVYGGGSDGFVMGWEGNV--EIVR----------------------------WKLA------CET-KAHEMA 262 (353)
Q Consensus 220 ~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~----------------------------~~~~------~~~-~~~~~~ 262 (353)
++|+|++.+++++ .|+.|++|++.. +... .... ..+ .+|...
T Consensus 250 ~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 250 VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp EEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred EEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 9999999988888 899999999987 3100 0000 222 478889
Q ss_pred EEEEEE---cC---cEEEEecCCCeEEEEecCCCc
Q 018591 263 VLCVCL---VG---EFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 263 v~~~~~---~~---~~l~~~~~dg~i~iw~~~~~~ 291 (353)
|.++++ ++ .+|++|+.||.|++||+.+++
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 999874 35 899999999999999998755
No 98
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-34 Score=241.77 Aligned_cols=259 Identities=12% Similarity=0.098 Sum_probs=203.1
Q ss_pred EEeCCCceeeEEeccCceeeEEEEEe--C-CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEee
Q 018591 40 VWQQPDLRMFTKFGHGDGSVKAVVTV--G-NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT 116 (353)
Q Consensus 40 vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (353)
+|++...+....+.+|...|.+++|+ + ++|++++.||.|++||+.++..... +
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~------------------- 112 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----I------------------- 112 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----E-------------------
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----e-------------------
Confidence 34445667788899999999999998 4 7999999999999999987652110 0
Q ss_pred cccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccc---cCcceEEEEEeC--CeEEEEcCCC
Q 018591 117 RRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKA---HDDAVNGLVASK--GIVYSASADG 188 (353)
Q Consensus 117 ~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~i~~~~--~~l~~~~~dg 188 (353)
...+|...|.+++|+| .+|++++.|+.|++||++. ..+..+.. |...|.+++|++ ..+++++.|+
T Consensus 113 ------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 185 (383)
T 3ei3_B 113 ------QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG 185 (383)
T ss_dssp ------CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS
T ss_pred ------ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC
Confidence 0116999999999998 6999999999999999985 44555543 448899999943 4999999999
Q ss_pred cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE
Q 018591 189 KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC 267 (353)
Q Consensus 189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (353)
.|++||++ ++ ....+..|...+ .+++|+|+++ ++++++.|+.|++||++...........+ .|...+.++.
T Consensus 186 ~i~i~d~~-~~-----~~~~~~~h~~~v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~ 257 (383)
T 3ei3_B 186 RLLLLGLD-GH-----EIFKEKLHKAKV-THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAY 257 (383)
T ss_dssp EEEEEETT-SC-----EEEEEECSSSCE-EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEE
T ss_pred CEEEEECC-CC-----EEEEeccCCCcE-EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEE
Confidence 99999995 33 567777888776 9999999998 89999999999999999843322343333 5777888877
Q ss_pred E---cCcEEEEecCCCeEEEEecCCCcceEEeccccCC-------C----------cCeEEEEeecCCCCCCeEEEEccC
Q 018591 268 L---VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH-------E----------GPVKCLQASPNAVGGGFLLYSGSL 327 (353)
Q Consensus 268 ~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h-------~----------~~v~~~~~~~~~~~~~~~l~s~~~ 327 (353)
+ ++++|++++.|+.|++||+++++.. ..+.+| . +.+..++|+|+ +++ +++.
T Consensus 258 ~s~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d----g~~--s~s~ 328 (383)
T 3ei3_B 258 FNPTDSTKLLTTDQRNEIRVYSSYDWSKP---DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD----DQL--LLND 328 (383)
T ss_dssp ECTTTSCEEEEEESSSEEEEEETTBTTSC---SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC----TTT--CTTC
T ss_pred EcCCCCCEEEEEcCCCcEEEEECCCCccc---cccccccccccccccceEEeccCCCCceEEEecCC----ccc--ccCC
Confidence 6 4689999999999999999987643 223322 2 34455777777 666 8889
Q ss_pred CCeEEEEEcCCCCCccccc
Q 018591 328 DKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 328 dg~i~iw~~~~~~~~~~~~ 346 (353)
||.|++||+.+++.+....
T Consensus 329 d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 329 KRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp CCCEEEEETTTCCEEEEEC
T ss_pred CCeEEEEecCCCceeeeec
Confidence 9999999999998876655
No 99
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-35 Score=244.13 Aligned_cols=247 Identities=12% Similarity=0.017 Sum_probs=190.8
Q ss_pred eccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCC
Q 018591 52 FGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD 129 (353)
Q Consensus 52 ~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (353)
+..+.++|.+++|+ +++|++++.||.|++||+.++. ..... .+.+|..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~---~~~~~---------------------------~~~~h~~ 56 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG---WKHAR---------------------------TFSDHDK 56 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE---EEECC---------------------------CBCCCSS
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc---eEEEE---------------------------EEecCCc
Confidence 44466789999998 8899999999999999998752 01222 2237999
Q ss_pred ceEEEEEeC--CeEEEecCCCcEEEEEcCCce---eeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccc
Q 018591 130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLK---CLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHC 202 (353)
Q Consensus 130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 202 (353)
.|.+++|+| ++|++++.|+.|++||+.+++ +...+..|...|.+++|++ ..+++++.|+.|++||++.++.
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-- 134 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND-- 134 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc--
Confidence 999999999 799999999999999999877 6777788999999999943 4899999999999999987751
Q ss_pred ccceeeeec-cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc--------------cceeeeeeccccceeEEEEE
Q 018591 203 HSLKGILEG-HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI--------------VRWKLACETKAHEMAVLCVC 267 (353)
Q Consensus 203 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~~~~v~~~~ 267 (353)
......+.. |...+ .+++|+|++++|++++.|+.|++||+.... ........+ .|...+.++.
T Consensus 135 ~~~~~~~~~~h~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTI-LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp CCCCEEECSSCCSCE-EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred ceeeeEeecccCCCe-EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 112455565 66655 999999999999999999999999986321 112344445 7888888887
Q ss_pred E--cCcEEEEecCCCeEEEEecCCCcce-EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 268 L--VGEFLCSGSADKSIGIWKREAFGKL-CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 268 ~--~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
+ ++++|++++.||.|++||+.+++.+ ..+..+.+|..+|.+++|+|+ +++|++++.|+.+ +|+..
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE----SAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET----TEEEEEESSSSEE-EECCC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC----CCEEEEEcCCcEE-EEEeC
Confidence 7 4889999999999999999988742 226778899999999999999 9999999877766 66655
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=226.84 Aligned_cols=246 Identities=17% Similarity=0.240 Sum_probs=203.6
Q ss_pred CCCCceeeeee--CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcE
Q 018591 3 CKSHRSLAVLS--GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRI 78 (353)
Q Consensus 3 ~~~~~~~~~l~--~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 78 (353)
..++++++.++ +|...|++++|+ +++|++|+.||+|++||+++++.+..+.+|...+.++.+.+..+++++.++.+
T Consensus 52 ~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~ 131 (318)
T 4ggc_A 52 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI 131 (318)
T ss_dssp TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEE
T ss_pred CCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCce
Confidence 45778777765 678899999996 89999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~ 156 (353)
++|+....... ...+.+|...+.++.+.+ .++++++.||.|++||++
T Consensus 132 ~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 132 HHHDVRVAEHH-------------------------------VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp EEEETTSSSCE-------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EeeecCCCcee-------------------------------EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 99998776421 222337999999999998 899999999999999998
Q ss_pred Ccee----eeeccccCcceEEEEEeCC-----eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591 157 DLKC----LESIKAHDDAVNGLVASKG-----IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK 227 (353)
Q Consensus 157 ~~~~----~~~~~~~~~~v~~i~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (353)
+++. ......+...|.++.+.+. .+++++.++.|++||.+... .... ..+... +..+.|+|++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-----~~~~-~~~~~~-v~~~~~~~~~~ 253 (318)
T 4ggc_A 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----CLSA-VDAHSQ-VCSILWSPHYK 253 (318)
T ss_dssp CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-----EEEE-EECSSC-EEEEEEETTTT
T ss_pred CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-----cccc-ccceee-eeeeeeccccc
Confidence 7653 3344567888999998332 34577889999999998876 3333 333333 48999999998
Q ss_pred eEEee--cCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCC
Q 018591 228 WVYGG--GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 228 ~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~ 290 (353)
.++++ +.|+.|++||++++ +....+.+|...|.+++++ +++|++|+.||+|++||+.+.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~----~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTM----AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ceEEEEEcCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 87764 47999999999988 5667788999999998875 889999999999999998754
No 101
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-33 Score=229.66 Aligned_cols=256 Identities=17% Similarity=0.198 Sum_probs=214.5
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD--- 75 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d--- 75 (353)
..+++.+..+.+|.+.|++++|+ +++|++++.||.|++||+.+++.+..+. +...|.++.|+ +.++++++.+
T Consensus 61 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~ 139 (369)
T 3zwl_B 61 SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMK 139 (369)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTT
T ss_pred CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccC
Confidence 46788899999999999999996 8899999999999999999999998888 78899999998 7899999998
Q ss_pred --CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCC--ceEEEEEeC--CeEEEecCCCc
Q 018591 76 --SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD--SISCLTVYN--GLIYSGSWDKT 149 (353)
Q Consensus 76 --g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~--~~l~~~~~dg~ 149 (353)
|.|++||+............ .......+..|.. .+.+++|++ +.+++++.||.
T Consensus 140 ~~g~i~~~d~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 198 (369)
T 3zwl_B 140 NPGSINIYEIERDSATHELTKV---------------------SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198 (369)
T ss_dssp BCCEEEEEEEEECTTTCCEEEE---------------------CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCEEEEEEecCCccceeeccc---------------------ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE
Confidence 99999999876532111110 1112233335666 999999999 89999999999
Q ss_pred EEEEEcCC-ceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC
Q 018591 150 LKVWRVAD-LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG 226 (353)
Q Consensus 150 v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (353)
|++||+++ .+.+..+..|...|.+++|++ ..+++++.|+.|++||+++.+ ....+. +... +..++|+|++
T Consensus 199 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~-~~~~-~~~~~~~~~~ 271 (369)
T 3zwl_B 199 ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ-----VLKKYE-TDCP-LNTAVITPLK 271 (369)
T ss_dssp EEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EEEEEE-CSSC-EEEEEECSSS
T ss_pred EEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc-----eeeeec-CCCC-ceeEEecCCC
Confidence 99999998 788899999999999999943 389999999999999999887 555555 3333 4999999999
Q ss_pred CeEEeecCCC--------------cEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCC
Q 018591 227 KWVYGGGSDG--------------FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 227 ~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~ 290 (353)
+++++++.++ .+++||...+ .....+.+|...+.++.++ +++|++++.||.|++|+++.+
T Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 272 EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE----EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp SEEEEEECCC-------------CEEEEEETTTC----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ceEEEeecCCCceEEEEecCCCcceeEEEecCCC----cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 9999999988 8999999887 5566677888889888874 889999999999999999865
Q ss_pred c
Q 018591 291 G 291 (353)
Q Consensus 291 ~ 291 (353)
.
T Consensus 348 ~ 348 (369)
T 3zwl_B 348 Y 348 (369)
T ss_dssp H
T ss_pred c
Confidence 4
No 102
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=259.18 Aligned_cols=254 Identities=18% Similarity=0.216 Sum_probs=207.3
Q ss_pred eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591 49 FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE 126 (353)
Q Consensus 49 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (353)
+..+.+|.+.|.+++|+ +++|++|+.||.|++||+..+... . ...+.+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~---~---------------------------~~~l~~ 51 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK---L---------------------------IDTLTG 51 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE---E---------------------------EEEECC
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc---c---------------------------ceeccC
Confidence 34678999999999998 789999999999999999754311 1 222337
Q ss_pred cCCceEEEEEeC----CeEEEecCCCcEEEEEcCCce--eeeeccccCcceEEEEEe----CCeEEEEcCCCcEEEEeCC
Q 018591 127 HADSISCLTVYN----GLIYSGSWDKTLKVWRVADLK--CLESIKAHDDAVNGLVAS----KGIVYSASADGKIKAWGKE 196 (353)
Q Consensus 127 ~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~----~~~l~~~~~dg~i~iwd~~ 196 (353)
|...|.+++|++ +.+++|+.||.|++||+.+++ .+..+..|...|.+++|+ +..+++++.||.|++||++
T Consensus 52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 999999999975 689999999999999999886 777888899999999993 4599999999999999998
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcC-------------CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSD-------------DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV 263 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 263 (353)
.... .....+..|...+ .+++|+| ++.++++|+.||.|++||++.+.........+.+|...+
T Consensus 132 ~~~~---~~~~~~~~~~~~v-~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 132 ENGT---TSPIIIDAHAIGV-NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (753)
T ss_dssp SSSC---CCCEEEECCSSCE-EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred cCCC---cceeEeecCCCce-EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence 7741 1234456666665 9999999 589999999999999999998766666777788899999
Q ss_pred EEEEEc-----CcEEEEecCCCeEEEEecCCCcce--EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 264 LCVCLV-----GEFLCSGSADKSIGIWKREAFGKL--CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 264 ~~~~~~-----~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
.++.++ +.+|++|+.||.|++||+.+++.. ..+....+|...|++++|+|+ +++|++++.||.|++|++
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd----g~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTT----TCCEEEECSSSCEECCBC
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCC----CCEEEEEcCCCEEEEEec
Confidence 888775 679999999999999999886421 123344568899999999999 999999999999999999
Q ss_pred CCCC
Q 018591 337 SKQS 340 (353)
Q Consensus 337 ~~~~ 340 (353)
..+.
T Consensus 284 ~~~~ 287 (753)
T 3jro_A 284 NLEG 287 (753)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 8654
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-34 Score=235.43 Aligned_cols=269 Identities=12% Similarity=0.019 Sum_probs=198.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeecccccccee
Q 018591 25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYL 104 (353)
Q Consensus 25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 104 (353)
++.+|++|+.||.|++||+.+++.+..+. ...|.++.+... +++++.|++|++|+.+... .+..+....
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~-----~~~~~~~~~--- 115 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQI-----TILDSKTNK--- 115 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEE-----EEEETTTCC---
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCce-----EEeecCCcc---
Confidence 37899999999999999999999888876 467777777766 9999999999999986421 000000000
Q ss_pred eeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCceeeeecc-ccCcceEEEEEeCC
Q 018591 105 GKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVASKG 179 (353)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~ 179 (353)
.......+|...|.+++|+| +++++++.||.|++||++++++..... .+...+.+++|+++
T Consensus 116 --------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd 181 (343)
T 3lrv_A 116 --------------VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD 181 (343)
T ss_dssp --------------EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT
T ss_pred --------------eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC
Confidence 00111126778999999987 689999999999999999998876663 34568999999443
Q ss_pred --eEEEEcCCCcEEEEeCCCCCcccccce-eeeec-cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeee
Q 018591 180 --IVYSASADGKIKAWGKELGKSHCHSLK-GILEG-HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACE 255 (353)
Q Consensus 180 --~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 255 (353)
++++|+.||.|++||+++++ .. ..+.. |...+ .+++|+|++.+|++++ ++.|++||++........ ..
T Consensus 182 g~~lasg~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v-~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~-~~ 253 (343)
T 3lrv_A 182 SLLLALYSPDGILDVYNLSSPD-----QASSRFPVDEEAKI-KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY-PT 253 (343)
T ss_dssp SCEEEEECTTSCEEEEESSCTT-----SCCEECCCCTTSCE-EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS-CC
T ss_pred CCEEEEEcCCCEEEEEECCCCC-----CCccEEeccCCCCE-EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee-cc
Confidence 88899999999999999887 33 55666 77665 9999999999999999 559999999987432211 11
Q ss_pred cccccee----EEEEEEcCcEEEEecC-CCeEEEEecCCCcceEEeccccCCCcCeEEEEeec---CCCCCCeEEEEccC
Q 018591 256 TKAHEMA----VLCVCLVGEFLCSGSA-DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP---NAVGGGFLLYSGSL 327 (353)
Q Consensus 256 ~~~~~~~----v~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~~l~s~~~ 327 (353)
+..+... ..++++++++|++++. |+.+++|++......... .++..+.|.| + ...+++++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~l~~~~~ 322 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-------DEESALCLQSDTAD----FTDMDVVCG 322 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-------EEEEECCC----CC----CCEEEEEEE
T ss_pred cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-------cCceeEecCccccc----cceeEEEec
Confidence 1112222 3555667999999988 999999999765432221 5677888888 6 778888888
Q ss_pred CCeEEEEEcC
Q 018591 328 DKSLRVWWVS 337 (353)
Q Consensus 328 dg~i~iw~~~ 337 (353)
||.+.++-..
T Consensus 323 d~~~~~~~~~ 332 (343)
T 3lrv_A 323 DGGIAAILKT 332 (343)
T ss_dssp TTEEEEEEEC
T ss_pred CCceEEEEec
Confidence 9988887543
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.9e-34 Score=240.78 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=168.5
Q ss_pred CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-------
Q 018591 66 GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN------- 138 (353)
Q Consensus 66 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------- 138 (353)
+.+|++++.|++|++||.+.+.......+..+. +|.+.|++++|+|
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~---------------------------gH~~~v~~v~~~p~~~~~~~ 153 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKS---------------------------GHHNFVNDIDIADVYSADNR 153 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTT---------------------------SCSSCEEEEEEEEEECTTCS
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccC---------------------------CCCCceEEEEEccccccccC
Confidence 457999999999999999887643333333332 8999999999975
Q ss_pred ---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCccccc--------
Q 018591 139 ---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHS-------- 204 (353)
Q Consensus 139 ---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~-------- 204 (353)
++|++|+.|++|++||++++.++..+..|..++.+++|+++ ++++++.|++|++||+++++.....
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 58999999999999999988888888889999999999543 7999999999999999877521100
Q ss_pred ------------ceeeeeccCCceeeEEEEc-CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE-------
Q 018591 205 ------------LKGILEGHKDVSLNSVVVS-DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL------- 264 (353)
Q Consensus 205 ------------~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~------- 264 (353)
......+|...+ .++.|+ |+++.+++++.|+.+++||+..+... ..+..+...+.
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v-~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSL-ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp CCSEEEESGGGC------CCSSSC-SEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCS
T ss_pred ceEEecccccceeeeecccccccc-eeeeeecCCCCEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEccc
Confidence 001123444444 788876 79999999999999999999876321 11122211111
Q ss_pred -------------EEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC
Q 018591 265 -------------CVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329 (353)
Q Consensus 265 -------------~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg 329 (353)
.+.+ ++.++++|+.||.|++||+.+++ .+..+.+|..+|++++|+|+ |++||+++.||
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~---~~~~~~~~~~~V~svafspd----G~~LA~as~~G 381 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD---SNSIPIQLGMPIVDFCWHQD----GSHLAIATEGS 381 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT---CCEEEEECSSCEEEEEECTT----SSEEEEEESSE
T ss_pred cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc---EEEEecCCCCcEEEEEEcCC----CCEEEEEeCCC
Confidence 1111 24577889999999999999887 44556678899999999999 99999999776
Q ss_pred eEEEEEcC
Q 018591 330 SLRVWWVS 337 (353)
Q Consensus 330 ~i~iw~~~ 337 (353)
+.+|++.
T Consensus 382 -v~lvrL~ 388 (393)
T 4gq1_A 382 -VLLTRLM 388 (393)
T ss_dssp -EEEEEEG
T ss_pred -eEEEEEe
Confidence 5566553
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=234.28 Aligned_cols=264 Identities=14% Similarity=0.153 Sum_probs=212.1
Q ss_pred EEEeCCCceeeEEeccCceeeEEEEEe-C----CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccccee
Q 018591 39 IVWQQPDLRMFTKFGHGDGSVKAVVTV-G----NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY 113 (353)
Q Consensus 39 ~vwd~~~~~~~~~~~~~~~~v~~~~~~-~----~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
..|+....+.+..+.+|...|.+++|+ . ++|++++.||.|++||+++.....
T Consensus 22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~----------------------- 78 (368)
T 3mmy_A 22 TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI----------------------- 78 (368)
T ss_dssp -CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----------------------
T ss_pred ccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----------------------
Confidence 345667778888899999999999998 2 689999999999999998733111
Q ss_pred EeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCC--eEEEEcCC
Q 018591 114 VQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKG--IVYSASAD 187 (353)
Q Consensus 114 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~--~l~~~~~d 187 (353)
...+.+|...|.+++|+| ++|++++.||.|++||+++++.+. +..|...|.+++| .++ .+++++.|
T Consensus 79 -------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d 150 (368)
T 3mmy_A 79 -------PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWD 150 (368)
T ss_dssp -------EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETT
T ss_pred -------EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCC
Confidence 123347999999999998 799999999999999999988776 4579999999999 444 79999999
Q ss_pred CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE
Q 018591 188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC 267 (353)
Q Consensus 188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (353)
|.|++||+++++ ....+..+.. +.++.+. ...+++++.++.+++|+++..............+...+.++.
T Consensus 151 g~i~vwd~~~~~-----~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (368)
T 3mmy_A 151 KTLKFWDTRSSN-----PMMVLQLPER--CYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF 221 (368)
T ss_dssp SEEEEECSSCSS-----CSEEEECSSC--EEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE
T ss_pred CcEEEEECCCCc-----EEEEEecCCC--ceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc
Confidence 999999999887 5566665542 2555555 458888999999999999887555555555555667777777
Q ss_pred EcCcE----EEEecCCCeEEEEecCCCcceEEeccccCCCc------------CeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591 268 LVGEF----LCSGSADKSIGIWKREAFGKLCRVGAITGHEG------------PVKCLQASPNAVGGGFLLYSGSLDKSL 331 (353)
Q Consensus 268 ~~~~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~------------~v~~~~~~~~~~~~~~~l~s~~~dg~i 331 (353)
++... +++++.||.|++|+++.......+..+.+|.. +|++++|+|+ +++|++++.||.|
T Consensus 222 ~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~s~~~dg~i 297 (368)
T 3mmy_A 222 KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV----HGTLATVGSDGRF 297 (368)
T ss_dssp ECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT----TCCEEEEETTSCE
T ss_pred ccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC----CCEEEEEccCCeE
Confidence 76544 99999999999999998743234556667766 7999999999 9999999999999
Q ss_pred EEEEcCCCCCccccc
Q 018591 332 RVWWVSKQSSTSDSE 346 (353)
Q Consensus 332 ~iw~~~~~~~~~~~~ 346 (353)
++||+.+++.+....
T Consensus 298 ~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 298 SFWDKDARTKLKTSE 312 (368)
T ss_dssp EEEETTTTEEEEECC
T ss_pred EEEECCCCcEEEEec
Confidence 999999988776654
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.1e-34 Score=232.92 Aligned_cols=249 Identities=14% Similarity=0.118 Sum_probs=198.7
Q ss_pred EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591 50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127 (353)
Q Consensus 50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
....+|.+.|.+++|+ +++|++++.||.|++|++..+..... .....+|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~-----------------------------~~~~~~~ 55 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-----------------------------LLQSLRY 55 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-----------------------------EEEEEEC
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc-----------------------------ceeeeec
Confidence 3446799999999998 78999999999999999987641110 1122279
Q ss_pred CCceEEEEEeC--C-eEEEecCCCcEEEEEc-CCceeeeeccc--cCcceEEEEEe-CCeEEEEcCCCcEEEEeCCC---
Q 018591 128 ADSISCLTVYN--G-LIYSGSWDKTLKVWRV-ADLKCLESIKA--HDDAVNGLVAS-KGIVYSASADGKIKAWGKEL--- 197 (353)
Q Consensus 128 ~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~-~~~~~~~~~~~--~~~~v~~i~~~-~~~l~~~~~dg~i~iwd~~~--- 197 (353)
...|.+++|++ . ++++|+.||.|++||+ .+++. ..+.. |...|.+++|. ++.+++++.|+.|++||+++
T Consensus 56 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred CCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc
Confidence 99999999998 6 8999999999999999 77654 66778 99999999995 56999999999999999986
Q ss_pred ------CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc-cccceeeeeeccccceeEEEEEE--
Q 018591 198 ------GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV-EIVRWKLACETKAHEMAVLCVCL-- 268 (353)
Q Consensus 198 ------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~-- 268 (353)
.+ +...+. +...+ .+++|+|++ +++++.|+.|++||++. .... .......+...+.++.+
T Consensus 135 ~~~~~~~~-----~~~~~~-~~~~v-~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~i~~i~~~~ 203 (342)
T 1yfq_A 135 GVIAVKNL-----NSNNTK-VKNKI-FTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN--GTIEESGLKYQIRDVALLP 203 (342)
T ss_dssp BCEEEEES-----CSSSSS-SCCCE-EEEEECSSE--EEEEESTTEEEEEESSCCTTCC--CEEEECSCSSCEEEEEECS
T ss_pred ccccccCC-----eeeEEe-eCCce-EEEEecCCc--EEEEeCCCeEEEEECCcccccc--ceeeecCCCCceeEEEECC
Confidence 44 333444 55544 999999987 99999999999999987 4322 22223345556666655
Q ss_pred -cCcEEEEecCCCeEEEEecCCC------cceEEeccccCCCc---------CeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591 269 -VGEFLCSGSADKSIGIWKREAF------GKLCRVGAITGHEG---------PVKCLQASPNAVGGGFLLYSGSLDKSLR 332 (353)
Q Consensus 269 -~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~l~s~~~dg~i~ 332 (353)
+++++++++.||.|++|+++.. + ....+..|.. .|++++|+|+ +++|++++.||.|+
T Consensus 204 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSS---KRFAFRCHRLNLKDTNLAYPVNSIEFSPR----HKFLYTAGSDGIIS 276 (342)
T ss_dssp GGGCEEEEEETTSEEEEEECCTTCCSTTCT---TCEEEECCCCCTTCCSSCCCEEEEEECTT----TCCEEEEETTSCEE
T ss_pred CCCCEEEEEecCCcEEEEEEcCCCcccccc---cceeeecccccccccccceeEEEEEEcCC----CCEEEEecCCceEE
Confidence 5789999999999999999876 3 3444566654 9999999999 99999999999999
Q ss_pred EEEcCCCCCccccc
Q 018591 333 VWWVSKQSSTSDSE 346 (353)
Q Consensus 333 iw~~~~~~~~~~~~ 346 (353)
+||+.+++.+....
T Consensus 277 vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 277 CWNLQTRKKIKNFA 290 (342)
T ss_dssp EEETTTTEEEEECC
T ss_pred EEcCccHhHhhhhh
Confidence 99999988776654
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-34 Score=240.27 Aligned_cols=264 Identities=9% Similarity=0.035 Sum_probs=203.4
Q ss_pred CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCcccee
Q 018591 14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVF 91 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~ 91 (353)
.-...|.+|+|+ |+++||++.|++|+ |.+.++ .+.+|...|.+++|++.- .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~~~---- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-----FENKLDFELAQQNG---- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-----CCCTTTTSCCCSSC----
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-----CcceEEEEeCCCce----
Confidence 345789999996 99999999999999 755554 447999999999998432 45555555543222
Q ss_pred EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591 92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDD 169 (353)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 169 (353)
...+ .|...|.+++|+| ..|++++.||.|++||... ++..+. |..
T Consensus 79 --~~~~----------------------------~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~ 125 (588)
T 2j04_A 79 --LLNS----------------------------QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG 125 (588)
T ss_dssp --SSTT----------------------------SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS
T ss_pred --Eeec----------------------------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC
Confidence 0000 4678899999999 8899999999999999544 666676 665
Q ss_pred -----ceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccc--cceeee----eccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 170 -----AVNGLVASKG--IVYSASADGKIKAWGKELGKSHCH--SLKGIL----EGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 170 -----~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
.+.+++|+++ +|++|+.||+|++||+.++..... .....+ .+|...+ .+++|+|+| +++++.|+
T Consensus 126 ~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V-~sVawSPdg--Laass~D~ 202 (588)
T 2j04_A 126 NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWV-THIVWYEDV--LVAALSNN 202 (588)
T ss_dssp CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCE-EEEEEETTE--EEEEETTC
T ss_pred ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccE-EEEEEcCCc--EEEEeCCC
Confidence 4999999444 999999999999999998751000 023444 5566555 999999999 88888999
Q ss_pred cEEEeeccccccceeeeeec-cccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe--ec
Q 018591 237 FVMGWEGNVEIVRWKLACET-KAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA--SP 313 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~--~~ 313 (353)
.|++||+..+... .....+ .+|...|.+++|+++.||+++ ++.|++||+.+++ ......+|.+.|.+++| +|
T Consensus 203 tVrlWd~~~~~~~-~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~---~~~~~~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 203 SVFSMTVSASSHQ-PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS---ISSLKTGSLENFHIIPLNHEK 277 (588)
T ss_dssp CEEEECCCSSSSC-CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE---EEEEECSCCSCCCEEEETTCS
T ss_pred eEEEEECCCCccc-cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe---EEEEEcCCCceEEEEEeeeCC
Confidence 9999999887311 112234 367788888888888999887 6999999999865 21223379999999999 99
Q ss_pred CCCCCCeEEEEccCCCeEEEEEcC
Q 018591 314 NAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 314 ~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
+ +..|+++++||+ ++|...
T Consensus 278 d----~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 278 E----STILLMSNKTSY-KVLLED 296 (588)
T ss_dssp S----CEEEEECSSCEE-EEEESS
T ss_pred C----CCEEEEEcCCCC-EEEeec
Confidence 9 999999999999 999986
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2e-33 Score=237.59 Aligned_cols=258 Identities=16% Similarity=0.200 Sum_probs=202.5
Q ss_pred EEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591 50 TKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE 126 (353)
Q Consensus 50 ~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (353)
.....|.+.|.+++|+ +.+|++++.||.|++|++........ + .........+.+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------~----------------~~~~~~~~~~~~ 179 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------P----------------SGECQPDLRLRG 179 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------T----------------TCCCCCSEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------c----------------cccCCCcEEecC
Confidence 3445678999999998 35899999999999999986421100 0 000112334458
Q ss_pred cCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCcee-------eeeccccCcceEEEEEeC---CeEEEEcCCCcEEEE
Q 018591 127 HADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKC-------LESIKAHDDAVNGLVASK---GIVYSASADGKIKAW 193 (353)
Q Consensus 127 ~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iw 193 (353)
|...|.+++|++ . +|++|+.||.|++||+.++.. ...+..|...|.+++|.+ ..+++++.||.|++|
T Consensus 180 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 999999999998 3 899999999999999987322 455678999999999943 388999999999999
Q ss_pred eCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C
Q 018591 194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G 270 (353)
Q Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 270 (353)
|+++... ......+..|...+ ++++|+|++. ++++|+.||.|++||++... .....+..|...+.++.++ +
T Consensus 260 d~~~~~~--~~~~~~~~~~~~~v-~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~h~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 260 DTRNNNT--SKPSHTVDAHTAEV-NCLSFNPYSEFILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHN 333 (430)
T ss_dssp ETTCSCS--SSCSEEEECCSSCE-EEEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEECCSSCEEEEEECSSC
T ss_pred ECCCCCC--CcceeEeecCCCCe-EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---CCeEEeecCCCCEEEEEECCCC
Confidence 9997631 11445566777765 9999999987 68899999999999998742 3455666788889888886 4
Q ss_pred -cEEEEecCCCeEEEEecCCCcc-----------eEEeccccCCCcCeEEEEeecCCCCCCe-EEEEccCCCeEEEEEcC
Q 018591 271 -EFLCSGSADKSIGIWKREAFGK-----------LCRVGAITGHEGPVKCLQASPNAVGGGF-LLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 271 -~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~ 337 (353)
.+|++++.||.|++||+..... ...+..+.+|...|++++|+|+ +. +|++++.||.|++|++.
T Consensus 334 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~----~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN----EPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSS----STTEEEEEETTSEEEEEEEC
T ss_pred CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCC----CCCEEEEEECCCCEEEeEcc
Confidence 4799999999999999987321 1256667889999999999999 77 99999999999999987
Q ss_pred CC
Q 018591 338 KQ 339 (353)
Q Consensus 338 ~~ 339 (353)
+.
T Consensus 410 ~~ 411 (430)
T 2xyi_A 410 EN 411 (430)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.8e-33 Score=236.73 Aligned_cols=251 Identities=18% Similarity=0.209 Sum_probs=205.1
Q ss_pred eeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC----------ceeeEEeccCceeeEEEEEe--CC-EEEEec
Q 018591 10 AVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD----------LRMFTKFGHGDGSVKAVVTV--GN-KVFTAH 73 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~----------~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~ 73 (353)
..+.+|.+.|++++|+ +.+|++++.||.|++||+.+ .+.+..+.+|...|.+++|+ +. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 4566899999999996 46999999999999999876 67788899999999999998 44 999999
Q ss_pred CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcE
Q 018591 74 QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTL 150 (353)
Q Consensus 74 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v 150 (353)
.||.|++|++.......... .....+.+|...|.+++|+| ..+++++.||.|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVI-------------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEE-------------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred CCCeEEEEeCCCCCCCCcee-------------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence 99999999998743110000 01223347999999999987 689999999999
Q ss_pred EEEEcCCc---eeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591 151 KVWRVADL---KCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD 224 (353)
Q Consensus 151 ~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (353)
++||++++ +.+..+..|...|++++|+++ .+++++.||.|++||++... .+...+..|...+ .+++|+|
T Consensus 257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~~~~~h~~~v-~~i~~sp 331 (430)
T 2xyi_A 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLHSFESHKDEI-FQVQWSP 331 (430)
T ss_dssp EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSEEEECCSSCE-EEEEECS
T ss_pred EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeEEeecCCCCE-EEEEECC
Confidence 99999987 567777889999999999442 68899999999999999754 2566777787766 9999999
Q ss_pred CCC-eEEeecCCCcEEEeeccccccc----------eeeeeeccccceeEEEEEEc--Cc-EEEEecCCCeEEEEecCCC
Q 018591 225 DGK-WVYGGGSDGFVMGWEGNVEIVR----------WKLACETKAHEMAVLCVCLV--GE-FLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 225 ~~~-~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~iw~~~~~ 290 (353)
+++ ++++++.|+.|++||+...... ........+|...+.++.++ +. +|++++.||.|++|++...
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 985 6899999999999999873211 14555667788889888886 55 8999999999999998753
No 110
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=229.42 Aligned_cols=249 Identities=14% Similarity=0.158 Sum_probs=195.0
Q ss_pred EEeccCceeeEEEEEe--CC-EEEEecC---CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591 50 TKFGHGDGSVKAVVTV--GN-KVFTAHQ---DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123 (353)
Q Consensus 50 ~~~~~~~~~v~~~~~~--~~-~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (353)
..+.+|...|.+++|+ +. ++++++. ||.|++||+++++.... .
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-------------------------------~ 60 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-------------------------------R 60 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-------------------------------E
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce-------------------------------e
Confidence 3457799999999998 43 4556665 99999999987652111 1
Q ss_pred eeecCCceEEEEEeC-----CeEEEecCCCcEEEEEcCCce-eeeeccccCcceEEEEEe--------CCeEEEEcCCCc
Q 018591 124 WIEHADSISCLTVYN-----GLIYSGSWDKTLKVWRVADLK-CLESIKAHDDAVNGLVAS--------KGIVYSASADGK 189 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~-----~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~--------~~~l~~~~~dg~ 189 (353)
..+|...|.+++|+| .++++|+.||.|++||+.+++ ++..+.+|...|.++.|. +..+++++.||.
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 127899999999987 679999999999999999888 888899999999999662 339999999999
Q ss_pred EEEEeCCCCCcccccceeeeeccC---CceeeEEE----EcCCCCeEEeecCCCcEEEeeccccccceeeeeecccccee
Q 018591 190 IKAWGKELGKSHCHSLKGILEGHK---DVSLNSVV----VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMA 262 (353)
Q Consensus 190 i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 262 (353)
|++||+++++. ....+..+. ...+.+++ |+|+++++++++.||.|++||++.+.. .....|...
T Consensus 141 i~vwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~ 211 (357)
T 3i2n_A 141 VKVWDPRQKDD----PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNG 211 (357)
T ss_dssp EEEECTTSCSS----CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSC
T ss_pred EEEEeCCCCCC----cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCc
Confidence 99999988751 334443333 33458888 788999999999999999999998742 222455667
Q ss_pred EEEEEE-----cCcEEEEecCCCeEEEEecCCCcceEEe--ccccCCCcCeEEEEeecCCCCCCe-EEEEccCCCeEEEE
Q 018591 263 VLCVCL-----VGEFLCSGSADKSIGIWKREAFGKLCRV--GAITGHEGPVKCLQASPNAVGGGF-LLYSGSLDKSLRVW 334 (353)
Q Consensus 263 v~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~dg~i~iw 334 (353)
+.++.+ ++.+|++++.||.|++||+++++....+ ..+.+|...|++++|+|+ +. +|++++.||.|++|
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ----NRELFLTAGGAGGLHLW 287 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT----EEEEEEEEETTSEEEEE
T ss_pred eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC----CCcEEEEEeCCCcEEEe
Confidence 777776 4689999999999999999876532221 133489999999999999 77 89999999999999
Q ss_pred EcCCCCCc
Q 018591 335 WVSKQSST 342 (353)
Q Consensus 335 ~~~~~~~~ 342 (353)
|+..+...
T Consensus 288 d~~~~~~~ 295 (357)
T 3i2n_A 288 KYEYPIQR 295 (357)
T ss_dssp EEECCSCC
T ss_pred ecCCCccc
Confidence 99876544
No 111
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.2e-33 Score=237.85 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=177.8
Q ss_pred ceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccC--ceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 7 RSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHG--DGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
.....+.+|.++|++|+|+ +++|+||+.||+|++||++++........+ ...+.+++|+ +.+|++|+.||.|+
T Consensus 155 ~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 155 PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVI 234 (435)
T ss_dssp CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence 3455677999999999995 679999999999999999876555444433 4457788887 78999999999999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~ 156 (353)
+||++... ...+.+|...|.+++|+| .++++|+.|+.|++||++
T Consensus 235 ~wd~~~~~---------------------------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 235 LLNMDGKE---------------------------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281 (435)
T ss_dssp EEESSSCB---------------------------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred eeccCcce---------------------------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence 99986543 111237999999999998 478899999999999998
Q ss_pred Cceeeee---ccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc-----eeeEEEEcCCC
Q 018591 157 DLKCLES---IKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV-----SLNSVVVSDDG 226 (353)
Q Consensus 157 ~~~~~~~---~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~ 226 (353)
+.+.... ..+|...|++++|++ .+|++++.||.|++||+.++. ....+..|... .+....|+|++
T Consensus 282 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
T 4e54_B 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD-----CPLGLIPHPHRHFQHLTPIKAAWHPRY 356 (435)
T ss_dssp TCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS-----SEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred cccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc-----cceEEecccccccccceeEEEEEcCCC
Confidence 8765443 357899999999944 399999999999999999876 33333322211 11344566655
Q ss_pred CeEEeec------------CCCcEEEeeccccccceeeeeec-cccceeEE---EEEEcCcEEEEecCCCeEEEEecCCC
Q 018591 227 KWVYGGG------------SDGFVMGWEGNVEIVRWKLACET-KAHEMAVL---CVCLVGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 227 ~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~v~---~~~~~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
..++++. .++.|++||..++. ....+ ..|...+. .++++|++|++|+ |+.|+||+++++
T Consensus 357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~----~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK----MMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC----EEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc----EEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 5555443 34679999999874 33332 34555554 4556789998876 789999999886
Q ss_pred c
Q 018591 291 G 291 (353)
Q Consensus 291 ~ 291 (353)
+
T Consensus 432 k 432 (435)
T 4e54_B 432 R 432 (435)
T ss_dssp -
T ss_pred e
Confidence 5
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=238.51 Aligned_cols=253 Identities=14% Similarity=0.144 Sum_probs=189.2
Q ss_pred CceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC----
Q 018591 55 GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA---- 128 (353)
Q Consensus 55 ~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 128 (353)
+.+.|.+++|+ +++|++|+.||.|++|++.++....... . ........+.+|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-----~----------------~~~~~~~~~~~h~~~~~ 85 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS-----R----------------GEYNVYSTFQSHEPEFD 85 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC-----C----------------CCEEEEEEEECCCCEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc-----c----------------cceeEeccccccccccc
Confidence 57899999998 8899999999999999998765210000 0 0000122334676
Q ss_pred --------CceEEEEEeC----CeEEEecCCCcEEEEEcCCceee-----------------------------------
Q 018591 129 --------DSISCLTVYN----GLIYSGSWDKTLKVWRVADLKCL----------------------------------- 161 (353)
Q Consensus 129 --------~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~----------------------------------- 161 (353)
..|++++|+| ..+++++.|+.|++||+.+++..
T Consensus 86 ~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (447)
T 3dw8_B 86 YLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165 (447)
T ss_dssp GGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence 8899999998 27999999999999999765432
Q ss_pred ----ee-ccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccccccee-------eeeccCCceeeEEEEcCCC-
Q 018591 162 ----ES-IKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKG-------ILEGHKDVSLNSVVVSDDG- 226 (353)
Q Consensus 162 ----~~-~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~- 226 (353)
.. ..+|...|.+++|++ ..++++ .|+.|++||++.... ... .+..|...+ .+++|+|++
T Consensus 166 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~ 239 (447)
T 3dw8_B 166 ASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR----SFNIVDIKPANMEELTEVI-TAAEFHPNSC 239 (447)
T ss_dssp EEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE----EEEEEECCCSSGGGCCCCE-EEEEECSSCT
T ss_pred ccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc----eeeeeecccccccccCcce-EEEEECCCCC
Confidence 12 367999999999943 377887 899999999984331 222 245666665 999999998
Q ss_pred CeEEeecCCCcEEEeeccccccceeeeeeccccce------------eEEEEEEc--CcEEEEecCCCeEEEEecCC-Cc
Q 018591 227 KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM------------AVLCVCLV--GEFLCSGSADKSIGIWKREA-FG 291 (353)
Q Consensus 227 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~v~~~~~~--~~~l~~~~~dg~i~iw~~~~-~~ 291 (353)
++|++++.||.|++||++.+.........+..|.. .+.++.++ +++|++++. +.|++||+++ ++
T Consensus 240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~ 318 (447)
T 3dw8_B 240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR 318 (447)
T ss_dssp TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS
T ss_pred cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc
Confidence 99999999999999999987432222444555554 77777775 889999999 9999999987 55
Q ss_pred ceEEeccccCCCcC---------------eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 292 KLCRVGAITGHEGP---------------VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 292 ~~~~~~~~~~h~~~---------------v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
.+..+.+|... +..++|+|+ +++|++|+.||.|++||+.+++.+
T Consensus 319 ---~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~----~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 319 ---PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS----DSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp ---CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTT----SSEEEEECSTTEEEEEETTTCCEE
T ss_pred ---ccceeeccccccccccccccccccccceEEEECCC----CCEEEEeccCCEEEEEEcCCCcce
Confidence 56667777542 334999999 999999999999999999988764
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.6e-33 Score=232.72 Aligned_cols=246 Identities=19% Similarity=0.221 Sum_probs=193.4
Q ss_pred eeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCc-------eeeEEeccCceeeEEEEEe--C-CEEEEecC
Q 018591 8 SLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDL-------RMFTKFGHGDGSVKAVVTV--G-NKVFTAHQ 74 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~ 74 (353)
.+..+.+|.++|++++|+ +++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+ + ++|++++.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 456788999999999995 689999999999999999987 6788899999999999998 3 68999999
Q ss_pred CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591 75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV 152 (353)
Q Consensus 75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i 152 (353)
||.|++||+++++ .+..+.. .+|...|.+++|+| .+|++++.||.|++
T Consensus 153 dg~i~iwd~~~~~-----~~~~~~~-------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 202 (402)
T 2aq5_A 153 DNVILVWDVGTGA-----AVLTLGP-------------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRV 202 (402)
T ss_dssp TSCEEEEETTTTE-----EEEEECT-------------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCEEEEEECCCCC-----ccEEEec-------------------------CCCCCceEEEEECCCCCEEEEEecCCcEEE
Confidence 9999999998765 2222210 26899999999998 79999999999999
Q ss_pred EEcCCceeeeec-cccCcc-eEEEEEe-CC-eEEEE---cCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcC
Q 018591 153 WRVADLKCLESI-KAHDDA-VNGLVAS-KG-IVYSA---SADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSD 224 (353)
Q Consensus 153 wd~~~~~~~~~~-~~~~~~-v~~i~~~-~~-~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 224 (353)
||+++++.+..+ ..|.+. +.++.|. ++ +++++ +.|+.|++||+++.+. ...... .+... +.+++|+|
T Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~-v~~~~~s~ 277 (402)
T 2aq5_A 203 IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE----PLSLQELDTSSG-VLLPFFDP 277 (402)
T ss_dssp EETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS----CSEEEECCCCSS-CEEEEEET
T ss_pred EeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC----CceEEeccCCCc-eeEEEEcC
Confidence 999999999888 678765 8999993 33 66677 6899999999988651 222333 33344 59999999
Q ss_pred CCCeEE-eecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCc
Q 018591 225 DGKWVY-GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 225 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
++++++ +++.||.|++||+..+........... +...+.++.++ +.+++ +.++.+++|++.+++
T Consensus 278 ~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~--s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 278 DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEV--NKCEIARFYKLHERK 344 (402)
T ss_dssp TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCG--GGTEEEEEEEEETTE
T ss_pred CCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecccccce--ecceeEEEEEcCCCc
Confidence 999986 566899999999998743222222222 44666666665 55555 456799999998754
No 114
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=229.04 Aligned_cols=278 Identities=18% Similarity=0.199 Sum_probs=185.7
Q ss_pred CccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-----CCEEEEecCCCcEEEEEccc
Q 018591 14 GHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-----GNKVFTAHQDSRIRVWKVSR 85 (353)
Q Consensus 14 ~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~~w~~~~ 85 (353)
+|...|++++|+ +++|++++.||.|++||+.+++....+. +...+.++.+. +.++++++.||.|++||+++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 699999999995 5699999999999999999999988887 46778888886 34899999999999999987
Q ss_pred CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCce-ee
Q 018591 86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLK-CL 161 (353)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~-~~ 161 (353)
+.. ...+.+|...|.+++|+| . ++++++.||.|++||++++. ++
T Consensus 176 ~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~ 223 (408)
T 4a11_B 176 GSC--------------------------------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL 223 (408)
T ss_dssp SCC--------------------------------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred cce--------------------------------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence 651 122337899999999999 4 58999999999999998754 33
Q ss_pred eec---------------cccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591 162 ESI---------------KAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD 224 (353)
Q Consensus 162 ~~~---------------~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (353)
..+ ..|...|.+++|+++ .+++++.||.|++||+++++................. .......
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 302 (408)
T 4a11_B 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL-KFTVSCG 302 (408)
T ss_dssp EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCC-CCEECCS
T ss_pred ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccc-eeEEecC
Confidence 333 568899999999443 8999999999999999987621111111111111111 2222333
Q ss_pred CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCC
Q 018591 225 DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGH 302 (353)
Q Consensus 225 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h 302 (353)
.+..+++++.++.|++||+.++ .....+.+|...+.++.++ +++|++|+.||.|++||+.+.+. +.....+
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~ 375 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSG----EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP---VPDDDET 375 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTC----CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------
T ss_pred CCceEEEEecCCEEEEEECcCC----cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc---cCCCCce
Confidence 4556777788999999999987 5666777888888887774 88999999999999999998763 3322222
Q ss_pred CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
. ....+.|.. ...+.+.+.|+.+++|+...
T Consensus 376 ~---~~~~~~~~~---~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 376 T---TKSQLNPAF---EDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ------------------------------------
T ss_pred E---ecccccccc---ceeecccCccCceeecCCcc
Confidence 2 223344431 45667778899999998764
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=236.60 Aligned_cols=259 Identities=10% Similarity=0.121 Sum_probs=201.1
Q ss_pred Cceeeeee-CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCce-----eeEEEEEe--CCEEEEecCC
Q 018591 6 HRSLAVLS-GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG-----SVKAVVTV--GNKVFTAHQD 75 (353)
Q Consensus 6 ~~~~~~l~-~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~s~~~d 75 (353)
++....+. +|.+.|++++|+ |++||+++.||.|++||.+. ++..+. |.. .|.+++|+ |++|++|+.|
T Consensus 74 ~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D 150 (588)
T 2j04_A 74 AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED 150 (588)
T ss_dssp CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence 33333444 568999999997 99999999999999999644 666667 555 59999998 8999999999
Q ss_pred CcEEEEEcccCcc--ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEE
Q 018591 76 SRIRVWKVSRSSE--NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVW 153 (353)
Q Consensus 76 g~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iw 153 (353)
|+|++||+.++.. ..+-.+.+++... .+|...|.+++|+|+-+++++.|+.|++|
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~-----------------------~gh~~~V~sVawSPdgLaass~D~tVrlW 207 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSD-----------------------AGSKDWVTHIVWYEDVLVAALSNNSVFSM 207 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSC-----------------------TTCCCCEEEEEEETTEEEEEETTCCEEEE
T ss_pred CEEEEEECCCCccccccceeeeeeeccc-----------------------ccccccEEEEEEcCCcEEEEeCCCeEEEE
Confidence 9999999987642 1111222221100 16889999999999339999999999999
Q ss_pred EcCCcee---eeec-cccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEE--cCCCC
Q 018591 154 RVADLKC---LESI-KAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV--SDDGK 227 (353)
Q Consensus 154 d~~~~~~---~~~~-~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~ 227 (353)
|+..++. ..++ .+|...|.+++|+++.+++++ +++|++||+.+++ ......+|...+ ..++| +|++.
T Consensus 208 d~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~-----~~~~~~gh~~~V-~~va~~~s~d~~ 280 (588)
T 2j04_A 208 TVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS-----ISSLKTGSLENF-HIIPLNHEKEST 280 (588)
T ss_dssp CCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE-----EEEEECSCCSCC-CEEEETTCSSCE
T ss_pred ECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe-----EEEEEcCCCceE-EEEEeeeCCCCC
Confidence 9987763 3456 478899999999867888887 6999999999876 323333777766 99999 99999
Q ss_pred eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE
Q 018591 228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307 (353)
Q Consensus 228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~ 307 (353)
.+++++.||+ ++|.... ..+.+++..+++. |+++++|+..... +..+.+ ...|.
T Consensus 281 ~La~a~edG~-klw~~d~------------------~~~spd~~l~a~~--d~~v~lW~~~g~~----l~~~~~-~~~I~ 334 (588)
T 2j04_A 281 ILLMSNKTSY-KVLLEDE------------------LHVTADNIIAPYL--EKKFKKWSTIWNE----FNNYET-TLVIH 334 (588)
T ss_dssp EEEECSSCEE-EEEESSS------------------EEEECCCSSHHHH--HHHHHHTTTTTTS----SSSSCC-EEEEE
T ss_pred EEEEEcCCCC-EEEeecc------------------EEECCCceEEEEc--CCEEEEEECCCCc----eeeecc-ceEEE
Confidence 9999999999 9998761 3366777766664 9999999976543 334444 67799
Q ss_pred EEEeecCCCCCCeEEEEccC
Q 018591 308 CLQASPNAVGGGFLLYSGSL 327 (353)
Q Consensus 308 ~~~~~~~~~~~~~~l~s~~~ 327 (353)
+++|+|+ |+.+|+++.
T Consensus 335 ~va~SPd----G~~lA~~~~ 350 (588)
T 2j04_A 335 GISLSPD----GYSIAIVYD 350 (588)
T ss_dssp EEEECTT----SSEEEEEEE
T ss_pred EEEECCC----CCEEEEEEe
Confidence 9999999 999998863
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.8e-32 Score=222.30 Aligned_cols=246 Identities=14% Similarity=0.061 Sum_probs=177.0
Q ss_pred EEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeec
Q 018591 40 VWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR 117 (353)
Q Consensus 40 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (353)
+|++.+.+.+.....|...|.+++|+ +++|++|+.+| +++|+++.... ...
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----~~~--------------------- 55 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----IMS--------------------- 55 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----EEE---------------------
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----eee---------------------
Confidence 56777777887888999999999998 78888888775 78999875431 110
Q ss_pred ccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEe
Q 018591 118 RHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWG 194 (353)
Q Consensus 118 ~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd 194 (353)
.+...+..+.+.+ +.+ ++++.|+.|++||..+++++..+. +...|.++.++++.++++ .|+.|++||
T Consensus 56 --------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~-~~~~i~i~d 125 (355)
T 3vu4_A 56 --------QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS-YGDVISVFK 125 (355)
T ss_dssp --------EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE-ETTEEEEEE
T ss_pred --------eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE-EcCEEEEEE
Confidence 1112355556655 555 678889999999999999998886 677999999987766665 478999999
Q ss_pred CCCC-CcccccceeeeeccCCceeeEEEEcCCCCeEEe--ecCCCcEEEeeccccccc-----------eee-eeecccc
Q 018591 195 KELG-KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG--GGSDGFVMGWEGNVEIVR-----------WKL-ACETKAH 259 (353)
Q Consensus 195 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~-----------~~~-~~~~~~~ 259 (353)
+.+. + ....+.. ....+++++ .+++. |+.||.|++||+..+... ..+ ...+.+|
T Consensus 126 ~~~~~~-----~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h 194 (355)
T 3vu4_A 126 FGNPWK-----RITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH 194 (355)
T ss_dssp SSTTCC-----BSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC
T ss_pred CCCCce-----eeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc
Confidence 9987 4 3333333 225567777 55665 689999999999875310 011 5567889
Q ss_pred ceeEEEEEEc--CcEEEEecCCCe-EEEEecCCCcceEEecccc-C-CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591 260 EMAVLCVCLV--GEFLCSGSADKS-IGIWKREAFGKLCRVGAIT-G-HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 260 ~~~v~~~~~~--~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw 334 (353)
...|.+++++ +++|++|+.|++ |++||+++++ .+..+. + |...|++++|+|+ +++|++++.|++|++|
T Consensus 195 ~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~---~~~~~~~g~h~~~v~~~~~s~~----~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV---LVREFRRGLDRADVVDMKWSTD----GSKLAVVSDKWTLHVF 267 (355)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC---EEEEEECTTCCSCEEEEEECTT----SCEEEEEETTCEEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc---EEEEEEcCCCCCcEEEEEECCC----CCEEEEEECCCEEEEE
Confidence 9999888875 889999999998 9999999887 566666 5 9999999999999 9999999999999999
Q ss_pred EcCCCC
Q 018591 335 WVSKQS 340 (353)
Q Consensus 335 ~~~~~~ 340 (353)
|++.+.
T Consensus 268 ~~~~~~ 273 (355)
T 3vu4_A 268 EIFNDQ 273 (355)
T ss_dssp ESSCCS
T ss_pred EccCCC
Confidence 998764
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-33 Score=227.23 Aligned_cols=230 Identities=13% Similarity=0.037 Sum_probs=173.2
Q ss_pred eCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEe
Q 018591 65 VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSG 144 (353)
Q Consensus 65 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 144 (353)
++..+++|+.||.|++||+++++. +..+ ....|.++.++|. ++++
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~-----~~~~-----------------------------~~~~v~~~~~~~~-~~s~ 91 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKT-----ITTI-----------------------------TTPNPRTGGEHPA-IISR 91 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSC-----EEEE-----------------------------EEECCCTTCCCCS-EEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcE-----EEEE-----------------------------ecCCceeeeeCCc-eEEe
Confidence 478899999999999999988762 1111 0234555666666 9999
Q ss_pred cCCCcEEEEEcC---------Cceeeeecc-ccCcceEEEEEeC----CeEEEEcCCCcEEEEeCCCCCcccccceeeee
Q 018591 145 SWDKTLKVWRVA---------DLKCLESIK-AHDDAVNGLVASK----GIVYSASADGKIKAWGKELGKSHCHSLKGILE 210 (353)
Q Consensus 145 ~~dg~v~iwd~~---------~~~~~~~~~-~~~~~v~~i~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 210 (353)
+.|+.|++|+.. +++.+..+. .|..+|.++++++ +++++++.||+|++||+++++ ......
T Consensus 92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----~~~~~~ 166 (343)
T 3lrv_A 92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----QYIVHS 166 (343)
T ss_dssp CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----EEEEEC
T ss_pred cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----EEEEEe
Confidence 999999999765 344344433 5668899999954 389999999999999999887 444444
Q ss_pred ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEEc--CcEEEEecCCCeEEEEec
Q 018591 211 GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLV--GEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~ 287 (353)
.+....+.+++|+|++.+|++|+.||.|++||++++... ...+.. |...|.++.++ +.+|++++ |+.|++||+
T Consensus 167 ~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 167 AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA---SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC---CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEET
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC---ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEc
Confidence 444444699999999999999999999999999987422 134455 88899888875 78999999 559999999
Q ss_pred CCCcceEEeccccCCCcCeE--EEEeecCCCCCCeEEEEccC-CCeEEEEEcCCCCCc
Q 018591 288 EAFGKLCRVGAITGHEGPVK--CLQASPNAVGGGFLLYSGSL-DKSLRVWWVSKQSST 342 (353)
Q Consensus 288 ~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~ 342 (353)
++.+....+..+..|...+. +++|+|+ +++|++++. |+.|++|++.+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 243 RKDVGTLAYPTYTIPEFKTGTVTYDIDDS----GKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp TSSTTCBSSCCCBC-----CCEEEEECTT----SSEEEEEETTTTEEEEEEECTTTCS
T ss_pred CCCCcceeecccccccccccceEEEECCC----CCEEEEecCCCCcEEEEEEcccccc
Confidence 98874433433334555555 6999999 999999888 999999999766543
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.2e-31 Score=222.63 Aligned_cols=278 Identities=13% Similarity=0.092 Sum_probs=211.1
Q ss_pred ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeE-----EeccCceeeEEEEEe--CCEEEEecCCCc
Q 018591 7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFT-----KFGHGDGSVKAVVTV--GNKVFTAHQDSR 77 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~-----~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 77 (353)
+.+..+..|. .+.+++|+ +.++++++.|+.|++||+.+++... .+.+|...|.+++|+ +..+++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 5556666554 45689996 6788888889999999999998887 345788899999996 778999999999
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEEE
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVWR 154 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd 154 (353)
|++||+++++ .+. .+..|...+.+++|++ +.+ ++++.|+.|++||
T Consensus 193 v~~~d~~~~~-----~~~---------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 193 VHVFDLKTLA-----YKA---------------------------TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID 240 (433)
T ss_dssp EEEEETTTCC-----EEE---------------------------EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEECCCce-----EEE---------------------------EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence 9999998765 211 1225788899999998 455 5666899999999
Q ss_pred cCCceeeeeccccCcceEEEEEe-CC-eEEEEc--------CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591 155 VADLKCLESIKAHDDAVNGLVAS-KG-IVYSAS--------ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD 224 (353)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~~i~~~-~~-~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (353)
+++++.+..+..+ ..+.+++++ ++ .+++++ .|+.|++||+++++ ..... .+...+ ..++|+|
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-----~~~~~-~~~~~~-~~~~~~~ 312 (433)
T 3bws_A 241 RKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-----LIDTI-GPPGNK-RHIVSGN 312 (433)
T ss_dssp TTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-----EEEEE-EEEECE-EEEEECS
T ss_pred CCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-----EEeec-cCCCCc-ceEEECC
Confidence 9999988888664 558999994 33 777777 48899999999876 33333 233344 8999999
Q ss_pred CCCeE-EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecC---------------CCeEEEEe
Q 018591 225 DGKWV-YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSA---------------DKSIGIWK 286 (353)
Q Consensus 225 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---------------dg~i~iw~ 286 (353)
+++.+ ++++.++.|++||+.++.. ...+. +...+.++.+ +++++++++. ||.|++||
T Consensus 313 ~g~~l~~~~~~~~~v~v~d~~~~~~----~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d 387 (433)
T 3bws_A 313 TENKIYVSDMCCSKIEVYDLKEKKV----QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID 387 (433)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEE----EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred CCCEEEEEecCCCEEEEEECCCCcE----EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence 99755 6668999999999987732 22222 3344555555 5778887766 57999999
Q ss_pred cCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEcCC
Q 018591 287 REAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWVSK 338 (353)
Q Consensus 287 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~ 338 (353)
+.+++ .+..+.. ...+.+++|+|+ +++|++++ .|+.|++|+++.
T Consensus 388 ~~~~~---~~~~~~~-~~~~~~~~~s~d----g~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 388 TTTDT---VKEFWEA-GNQPTGLDVSPD----NRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTTTE---EEEEEEC-SSSEEEEEECTT----SCEEEEEETTTTEEEEEEETT
T ss_pred CCCCc---EEEEecC-CCCCceEEEcCC----CCEEEEEECCCCeEEEEEecC
Confidence 99876 3444444 457999999999 88888776 499999999864
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.4e-30 Score=216.47 Aligned_cols=264 Identities=13% Similarity=0.102 Sum_probs=203.9
Q ss_pred cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591 27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY 103 (353)
Q Consensus 27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 103 (353)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+ ++++ ++++.|+.|++||+.+++ .+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-----~~~~~------ 70 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-----VIATV------ 70 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-----EEEEE------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe-----EEEEE------
Confidence 468889999999999999999999998875 47899998 6665 677799999999998775 22221
Q ss_pred eeeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC-
Q 018591 104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG- 179 (353)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~- 179 (353)
.+...+.+++|+| +.+ ++++.++.|++||+.+++.+..+.. ...+.+++|+++
T Consensus 71 ----------------------~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg 127 (391)
T 1l0q_A 71 ----------------------PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDG 127 (391)
T ss_dssp ----------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS
T ss_pred ----------------------ECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCC
Confidence 2334899999998 555 5566779999999999998888765 456899999433
Q ss_pred -eE-EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE-EeecCCCcEEEeeccccccceeeeeec
Q 018591 180 -IV-YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIVRWKLACET 256 (353)
Q Consensus 180 -~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~ 256 (353)
.+ ++++.++.|++||+.+++ ....+..+.. + ..++|+|+++++ ++++.++.|++||++++. ....+
T Consensus 128 ~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~~~~-~-~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~ 196 (391)
T 1l0q_A 128 KKLYVTNNGDKTVSVINTVTKA-----VINTVSVGRS-P-KGIAVTPDGTKVYVANFDSMSISVIDTVTNS----VIDTV 196 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTE-----EEEEEECCSS-E-EEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCc-----EEEEEecCCC-c-ceEEECCCCCEEEEEeCCCCEEEEEECCCCe----EEEEE
Confidence 45 788889999999999886 5555555433 3 899999999887 677889999999998873 22222
Q ss_pred cccceeEEEEEE--cCcEEEEec---CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE-EEccCCCe
Q 018591 257 KAHEMAVLCVCL--VGEFLCSGS---ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL-YSGSLDKS 330 (353)
Q Consensus 257 ~~~~~~v~~~~~--~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l-~s~~~dg~ 330 (353)
. +...+.++.+ ++++|++++ .++.|++||+.+++ .+..+..|. .+.+++|+|+ +++| ++++.|+.
T Consensus 197 ~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~~-~~~~~~~s~d----g~~l~~s~~~d~~ 267 (391)
T 1l0q_A 197 K-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK---ITARIPVGP-DPAGIAVTPD----GKKVYVALSFXNT 267 (391)
T ss_dssp E-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE---EEEEEECCS-SEEEEEECTT----SSEEEEEETTTTE
T ss_pred e-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe---EEEEEecCC-CccEEEEccC----CCEEEEEcCCCCE
Confidence 2 2334555544 588888887 68999999999876 444555554 5799999999 7766 77789999
Q ss_pred EEEEEcCCCCCcccc
Q 018591 331 LRVWWVSKQSSTSDS 345 (353)
Q Consensus 331 i~iw~~~~~~~~~~~ 345 (353)
|++||+.+++.+...
T Consensus 268 v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 268 VSVIDTATNTITATM 282 (391)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEEE
Confidence 999999988765543
No 120
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.4e-31 Score=218.78 Aligned_cols=239 Identities=14% Similarity=0.103 Sum_probs=181.1
Q ss_pred eeeCccCceEEEEECCcEEEEEe-----------CCCcEEEEeCCCceee----EEe-----ccCceeeEEEEEe--CCE
Q 018591 11 VLSGHVGSVSSLALCGEFILSAS-----------QGKDIIVWQQPDLRMF----TKF-----GHGDGSVKAVVTV--GNK 68 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~~~~l~s~~-----------~dg~v~vwd~~~~~~~----~~~-----~~~~~~v~~~~~~--~~~ 68 (353)
.|.+|.+.|.+++++++.+++|. .|+.+|+|++.+.... ... ..+...+.+++|+ |++
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence 57789999999999988887764 4678999987654322 111 1234568888998 777
Q ss_pred EE--EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe
Q 018591 69 VF--TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG 144 (353)
Q Consensus 69 l~--s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~ 144 (353)
++ +++.|++|++||+++.. .+..+ .|...|.+++|+| .+++++
T Consensus 148 la~as~~~d~~i~iwd~~~~~-----~~~~~----------------------------~~~~~V~~v~fspdg~~l~s~ 194 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLT-----EKFEI----------------------------ETRGEVKDLHFSTDGKVVAYI 194 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTE-----EEEEE----------------------------ECSSCCCEEEECTTSSEEEEE
T ss_pred EEEEECCCCCEEEEeECCCCc-----EEEEe----------------------------CCCCceEEEEEccCCceEEec
Confidence 65 45579999999998875 21111 5778899999999 677777
Q ss_pred cCCCcEEEEEcCCceeee--eccccCcceEEEEE-eCC-eEEEEcCCC----cEEEEeCCCCCcccccceeeeeccCCce
Q 018591 145 SWDKTLKVWRVADLKCLE--SIKAHDDAVNGLVA-SKG-IVYSASADG----KIKAWGKELGKSHCHSLKGILEGHKDVS 216 (353)
Q Consensus 145 ~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~i~~-~~~-~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 216 (353)
+ ++.+++|+..+++.+. ....|...|.+++| +++ .+++++.|+ .++.||+...... ......+.+|...+
T Consensus 195 s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V 272 (365)
T 4h5i_A 195 T-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGI 272 (365)
T ss_dssp C-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCE
T ss_pred c-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec-ceeeeeecCCCCCe
Confidence 6 4567777777766543 34568889999999 333 788888777 6888998766411 11234556676665
Q ss_pred eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeee-ccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591 217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACE-TKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~ 289 (353)
++++|+|++++|++|+.|+.|++||++++ ++... +.+|...|++++|+ +++|++|+.|++|+|||+..
T Consensus 273 -~~~~~Spdg~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 273 -TSMDVDMKGELAVLASNDNSIALVKLKDL----SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp -EEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred -EeEEECCCCCceEEEcCCCEEEEEECCCC----cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999999999999999987 45544 57899999888774 89999999999999999964
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=6e-29 Score=208.01 Aligned_cols=288 Identities=12% Similarity=0.127 Sum_probs=210.1
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE-EecCCC
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF-TAHQDS 76 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg 76 (353)
..+++.+..+.+|.. +.+++|+ ++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+ +++|+ +++.++
T Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~ 96 (391)
T 1l0q_A 19 VTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASS 96 (391)
T ss_dssp TTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTT
T ss_pred CCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCC
Confidence 457788888888764 8999996 6665 777799999999999999999888765 89999998 66664 556779
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVW 153 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iw 153 (353)
.|++||+.+++ .+..+ .+...+.+++|++ +.+ ++++.|+.|++|
T Consensus 97 ~v~v~d~~~~~-----~~~~~----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 97 TLSVIDTTSNT-----VAGTV----------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp EEEEEETTTTE-----EEEEE----------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCe-----EEEEE----------------------------eCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 99999998765 21111 2445688999998 455 788889999999
Q ss_pred EcCCceeeeeccccCcceEEEEEeCC--eE-EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591 154 RVADLKCLESIKAHDDAVNGLVASKG--IV-YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY 230 (353)
Q Consensus 154 d~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 230 (353)
|+.+++.+..+..+ ..+.+++|+++ .+ ++++.++.|++||+++++ ....+.. ... +.+++|+|++++++
T Consensus 144 d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~-~~~-~~~~~~~~~g~~l~ 215 (391)
T 1l0q_A 144 NTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-----VIDTVKV-EAA-PSGIAVNPEGTKAY 215 (391)
T ss_dssp ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEEC-SSE-EEEEEECTTSSEEE
T ss_pred ECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-----EEEEEec-CCC-ccceEECCCCCEEE
Confidence 99999988888765 45689999433 45 677889999999999876 4444443 333 48999999999999
Q ss_pred eec---CCCcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEE-EEecCCCeEEEEecCCCcceEEeccccCCCc
Q 018591 231 GGG---SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFL-CSGSADKSIGIWKREAFGKLCRVGAITGHEG 304 (353)
Q Consensus 231 ~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~ 304 (353)
+++ .++.|++||+.++. ....+..+.. +.++ +++++++ ++++.|+.|++||+.+++ .+..+..|..
T Consensus 216 ~~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~---~~~~~~~~~~ 287 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGTNK----ITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNT---ITATMAVGKN 287 (391)
T ss_dssp EEEECSSCCEEEEEETTTTE----EEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEECSSS
T ss_pred EEecCcCCCcEEEEECCCCe----EEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCc---EEEEEECCcC
Confidence 887 68999999998873 3333333333 3444 4557766 677899999999999876 3434444433
Q ss_pred CeE---EEE------------eecCCCC------CCeEEEEccCCCeEEEEEcCCCCC
Q 018591 305 PVK---CLQ------------ASPNAVG------GGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 305 ~v~---~~~------------~~~~~~~------~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
+.. .+. |+.+... +...+...+.|..+++|++.++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 288 PYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 211 112 2222100 014577778899999999987764
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.8e-30 Score=217.45 Aligned_cols=204 Identities=16% Similarity=0.083 Sum_probs=164.4
Q ss_pred ecCCceEEEEEeC--CeE-EEecCCCcEEEEEcC--Cceeeeecc--ccCcceEEEEEeC--CeEEEEcCCCcEEEEeCC
Q 018591 126 EHADSISCLTVYN--GLI-YSGSWDKTLKVWRVA--DLKCLESIK--AHDDAVNGLVASK--GIVYSASADGKIKAWGKE 196 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~--~~~~~~~~~--~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~ 196 (353)
+|...|.+++|+| .+| ++++.||.|++||+. +++.+..+. .|...|.+++|++ ..|++++.+|.+++|++.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 6777899999999 564 899999999999999 888888876 5678999999944 389999999999999998
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcCC---CCeEEeecCCCcEEEeeccccccceeeeee-ccccceeEEEEEE-cCc
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSDD---GKWVYGGGSDGFVMGWEGNVEIVRWKLACE-TKAHEMAVLCVCL-VGE 271 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~ 271 (353)
+..... .....+.+|...+ .+++|+|+ +++|++++.|+.|++||+.++. .... ..+|...+.++.+ +++
T Consensus 180 ~~~~~~-~~~~~~~~h~~~v-~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~~sd~~ 253 (450)
T 2vdu_B 180 SIPEEK-FTQEPILGHVSML-TDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF----IVDKWLFGHKHFVSSICCGKDY 253 (450)
T ss_dssp SCCCSS-CCCCCSEECSSCE-EEEEEEECTTSCEEEEEEETTSCEEEEEESCTT----CEEEECCCCSSCEEEEEECSTT
T ss_pred Cccccc-ccceeeecccCce-EEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc----eeeeeecCCCCceEEEEECCCC
Confidence 776110 0223566777665 99999999 9999999999999999998873 3333 4578888888888 589
Q ss_pred EEEEecCCCeEEEEecCCCcceEEecccc----------------------CCCcCeEEEEeecCCCCCCeEEEEcc-CC
Q 018591 272 FLCSGSADKSIGIWKREAFGKLCRVGAIT----------------------GHEGPVKCLQASPNAVGGGFLLYSGS-LD 328 (353)
Q Consensus 272 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------------------~h~~~v~~~~~~~~~~~~~~~l~s~~-~d 328 (353)
+|++++.|+.|++||+.+++....+.... .+...|.+++|+|+ +++|++++ .|
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~~~~~d 329 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN----LPFVAFFVEAT 329 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS----SSEEEEEETTC
T ss_pred EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC----CCEEEEEECCC
Confidence 99999999999999999887433322100 23457999999999 89999988 89
Q ss_pred CeEEEEEc--CCC
Q 018591 329 KSLRVWWV--SKQ 339 (353)
Q Consensus 329 g~i~iw~~--~~~ 339 (353)
+.|++|++ .++
T Consensus 330 ~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 330 KCIIILEMSEKQK 342 (450)
T ss_dssp SEEEEEEECSSST
T ss_pred CeEEEEEeccCCC
Confidence 99999999 444
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=1.8e-30 Score=216.81 Aligned_cols=220 Identities=7% Similarity=0.046 Sum_probs=158.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeE-----EeccCceeeEEEEEe----------CCEEEEecCCCcEEEEEcccCccce
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFT-----KFGHGDGSVKAVVTV----------GNKVFTAHQDSRIRVWKVSRSSENV 90 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~-----~~~~~~~~v~~~~~~----------~~~l~s~~~dg~i~~w~~~~~~~~~ 90 (353)
+.+|++|+.|++|++||..+++... .+.+|.+.|.+++|+ +++|++++.|++|++||+.++..
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-- 178 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-- 178 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE--
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce--
Confidence 5689999999999999998876543 357899999999995 57899999999999999987651
Q ss_pred eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeec---
Q 018591 91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESI--- 164 (353)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~--- 164 (353)
.....+|...+.+++|+| .+|++|+.|+.|++||+++++.....
T Consensus 179 ------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 179 ------------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp ------------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--------
T ss_pred ------------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccccc
Confidence 112237889999999998 47999999999999999876543221
Q ss_pred ----------------------cccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC------
Q 018591 165 ----------------------KAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK------ 213 (353)
Q Consensus 165 ----------------------~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------ 213 (353)
.+|...+.++.|. +..+++++.|+++++||+...+. ...+..+.
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-----~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-----YNEISDSTMKLGPK 303 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------
T ss_pred CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-----CceEeeecCccccE
Confidence 3567788899882 34899999999999999987652 11111111
Q ss_pred ------------CceeeEEEEcC--CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEec
Q 018591 214 ------------DVSLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGS 277 (353)
Q Consensus 214 ------------~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 277 (353)
... ....++| ++.++++|+.||.|++||..++. .......|..+|.+++| +|++||+++
T Consensus 304 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~----~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 304 NLLPNVQGISLFPSL-LGACPHPRYMDYFATAHSQHGLIQLINTYEKD----SNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp CCSCSEEEECSSCCS-SCCEECSSCTTEEEEEETTTTEEEEEETTCTT----CCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred EEccccccccccCcc-eeEEEccCCCCEEEEEECCCCEEEEEECCCCc----EEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 112 2233443 34467788999999999999873 33444567778887776 499999998
Q ss_pred CCCeEEEEecC
Q 018591 278 ADKSIGIWKRE 288 (353)
Q Consensus 278 ~dg~i~iw~~~ 288 (353)
.+| +.+|.+.
T Consensus 379 ~~G-v~lvrL~ 388 (393)
T 4gq1_A 379 EGS-VLLTRLM 388 (393)
T ss_dssp SSE-EEEEEEG
T ss_pred CCC-eEEEEEe
Confidence 776 6666654
No 124
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.8e-29 Score=207.69 Aligned_cols=266 Identities=18% Similarity=0.177 Sum_probs=184.1
Q ss_pred ceeeeeeCccCceEEEEEC----CcEEEEEeCCCcEEEEeCCCc---------eeeEEeccCceeeEEEEEe----CCEE
Q 018591 7 RSLAVLSGHVGSVSSLALC----GEFILSASQGKDIIVWQQPDL---------RMFTKFGHGDGSVKAVVTV----GNKV 69 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~----~~~l~s~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~----~~~l 69 (353)
+.+..+.+|..+|++++|+ +++|++|+.||.|++||+.++ +.+..+..|...|.+++|+ +.++
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 5678889999999999995 789999999999999999877 6678888999999999997 5689
Q ss_pred EEecCCCcEEEEEcccCccceeEEe-eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-----CeEEE
Q 018591 70 FTAHQDSRIRVWKVSRSSENVFRLV-DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-----GLIYS 143 (353)
Q Consensus 70 ~s~~~dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~ 143 (353)
++++.||.|++||++++........ ..... .......|...+.++.|+| ..+++
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 187 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKV--------------------LSIPPANHLQSDFCLSWCPSRFSPEKLAV 187 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEES--------------------CSCCCSSCSCCCEEEEECCCSSSCCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccc--------------------cccccCCcccceeEEEeccCCCCCcEEEE
Confidence 9999999999999987652111000 00000 0000116788999999986 78999
Q ss_pred ecCCCcEEEEEcCCcee--eeeccccCcceEEEEE-eC-----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc
Q 018591 144 GSWDKTLKVWRVADLKC--LESIKAHDDAVNGLVA-SK-----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV 215 (353)
Q Consensus 144 ~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i~~-~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (353)
++.|+.+.+|+...++. +..+.+|...|++++| ++ .++++++.||.|++||++... ...........
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~ 262 (351)
T 3f3f_A 188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL-----SPLASEESLTN 262 (351)
T ss_dssp EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc-----CccccCCcccc
Confidence 99999998888777654 7778899999999999 33 379999999999999998765 11111111111
Q ss_pred eeeEEEEcCCCCeEEee----cCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591 216 SLNSVVVSDDGKWVYGG----GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 216 ~v~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~ 289 (353)
. .....++....+..+ .....+.+|+.... .....+.+|...+.++.++ +++|++|+.||.|++|++.+
T Consensus 263 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 263 S-NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV----ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp -----------------------------CCSEEE----EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred e-eccCCCcccccccccccccccceeeeecccccc----cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 1 333333333333333 33344555555444 5667778898999888885 88999999999999999999
Q ss_pred CcceEEeccccCC
Q 018591 290 FGKLCRVGAITGH 302 (353)
Q Consensus 290 ~~~~~~~~~~~~h 302 (353)
++....+..+..|
T Consensus 338 ~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 338 SNEFKCMSVITAQ 350 (351)
T ss_dssp TSCEEEEEEEC--
T ss_pred Ccchhheeehccc
Confidence 8877676665544
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=3.7e-29 Score=197.22 Aligned_cols=175 Identities=13% Similarity=0.050 Sum_probs=133.7
Q ss_pred CCcEEEEeC-CCceeeEEeccCceeeEEEEEe-----CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeec
Q 018591 35 GKDIIVWQQ-PDLRMFTKFGHGDGSVKAVVTV-----GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFM 108 (353)
Q Consensus 35 dg~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (353)
|+.|++|++ ++++.+..+..|...+..++|+ +..|++++.|++|++||+++++ ++.++....
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-----~l~tL~g~~------- 223 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-----LLKKMHIDD------- 223 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-----EEEEEECCC-------
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-----EEEEEcCCC-------
Confidence 889999998 5588888888887777777665 4899999999999999999887 433332100
Q ss_pred ccceeEeecccceeeeeecCCceEEEEEeC--Ce------------EEEecCCCcEEEEEcCCceeeeec-----cccCc
Q 018591 109 KQSNYVQTRRHHKRLWIEHADSISCLTVYN--GL------------IYSGSWDKTLKVWRVADLKCLESI-----KAHDD 169 (353)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~------------l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~ 169 (353)
.+...+.+++|+| .+ +++|+.|++|++||..+++.+..+ .+|..
T Consensus 224 -----------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~ 286 (356)
T 2w18_A 224 -----------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG 286 (356)
T ss_dssp --------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC
T ss_pred -----------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc
Confidence 1223566666666 22 477899999999999999887665 36666
Q ss_pred ceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeec
Q 018591 170 AVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG 243 (353)
Q Consensus 170 ~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 243 (353)
.+.+..+++..+++++.|++|++||+.+++ +...+.+|...++..++|+|+|++|++|+.|++|++||+
T Consensus 287 ~~lsg~~sg~~lASgS~DgTIkIWDl~tGk-----~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 287 RFLEGDVKDHCAAAILTSGTIAIWDLLLGQ-----CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCS-----EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eeEccccCCCEEEEEcCCCcEEEEECCCCc-----EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 666666677789999999999999999998 788888888877567999999999999999999999985
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.9e-27 Score=199.68 Aligned_cols=262 Identities=13% Similarity=0.110 Sum_probs=192.9
Q ss_pred cEEEEeCCCc--eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccce
Q 018591 37 DIIVWQQPDL--RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN 112 (353)
Q Consensus 37 ~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (353)
.|..||..++ +.+..+..+. .+.+++|+ +..+++++.++.|++||+++++. ....+.
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~-----~~~~~~------------- 162 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT-----VRLSPP------------- 162 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCE-----EEECCC-------------
T ss_pred EEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE-----eeecCc-------------
Confidence 4444555434 5666666554 45578887 55677788889999999988762 111110
Q ss_pred eEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eE-EEEcCC
Q 018591 113 YVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IV-YSASAD 187 (353)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~~~~~d 187 (353)
..+.+|...|.+++|++ ..+++++.|+.|++||+++++.+..+..|...+.+++|+++ .+ ++++.|
T Consensus 163 ---------~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 163 ---------EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp ---------HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTT
T ss_pred ---------ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCC
Confidence 01126888999999987 78889999999999999999999999889999999999443 45 566689
Q ss_pred CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec--------CCCcEEEeeccccccceeeeeecccc
Q 018591 188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG--------SDGFVMGWEGNVEIVRWKLACETKAH 259 (353)
Q Consensus 188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~ 259 (353)
+.|++||+++++ ....+..+. . +..++|+|+++++++++ .|+.|++||+.++.. .... .+
T Consensus 234 ~~i~~~d~~~~~-----~~~~~~~~~-~-~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~----~~~~-~~ 301 (433)
T 3bws_A 234 EDISVIDRKTKL-----EIRKTDKIG-L-PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL----IDTI-GP 301 (433)
T ss_dssp TEEEEEETTTTE-----EEEECCCCS-E-EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE----EEEE-EE
T ss_pred CcEEEEECCCCc-----EEEEecCCC-C-ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE----Eeec-cC
Confidence 999999999876 444444433 2 49999999999999887 588999999988732 2222 23
Q ss_pred ceeEEEEEE--cCc-EEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC---------
Q 018591 260 EMAVLCVCL--VGE-FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL--------- 327 (353)
Q Consensus 260 ~~~v~~~~~--~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~--------- 327 (353)
...+.++.+ +++ ++++++.++.|++||+.+++ .+..+. +...+.+++|+|+ +++|++++.
T Consensus 302 ~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~---~~~~~~-~~~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~ 373 (433)
T 3bws_A 302 PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK---VQKSIP-VFDKPNTIALSPD----GKYLYVSCRGPNHPTEGY 373 (433)
T ss_dssp EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE---EEEEEE-CSSSEEEEEECTT----SSEEEEEECCCCCTTTCT
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc---EEEEec-CCCCCCeEEEcCC----CCEEEEEecCCCcccccc
Confidence 334445554 565 55777899999999999876 333333 6678999999999 888887776
Q ss_pred ------CCeEEEEEcCCCCCccccc
Q 018591 328 ------DKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 328 ------dg~i~iw~~~~~~~~~~~~ 346 (353)
||.|++||+.+++.+....
T Consensus 374 ~~~g~~dg~v~~~d~~~~~~~~~~~ 398 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTTDTVKEFWE 398 (433)
T ss_dssp TSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred ccccccceEEEEEECCCCcEEEEec
Confidence 5799999999887665443
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=5.1e-27 Score=197.02 Aligned_cols=269 Identities=10% Similarity=0.008 Sum_probs=196.9
Q ss_pred CceEEEEEC---CcEEEEEe----CCC----cEEEEeC--CCceee--EEeccCceeeEEEEEe----------------
Q 018591 17 GSVSSLALC---GEFILSAS----QGK----DIIVWQQ--PDLRMF--TKFGHGDGSVKAVVTV---------------- 65 (353)
Q Consensus 17 ~~v~~~~~~---~~~l~s~~----~dg----~v~vwd~--~~~~~~--~~~~~~~~~v~~~~~~---------------- 65 (353)
..+...+|+ .+++++|+ .|| .|++||+ .+++.+ ..+.+|...+..+++.
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 456666664 45777886 467 9999999 888877 4577787777666553
Q ss_pred CCEEEEecCC------CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-
Q 018591 66 GNKVFTAHQD------SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN- 138 (353)
Q Consensus 66 ~~~l~s~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 138 (353)
+..++.++.+ +.|++||++... .+.+.+|...+.+++|+|
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~---------------------------------~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN---------------------------------QFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS---------------------------------CEEEEEESSCEEEEEECTT
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC---------------------------------CEEEeCCCCcceeeEEcCC
Confidence 5677766654 799999997543 222337888999999999
Q ss_pred -CeEEEecCCC---cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCCc--EEEEeCCCCCcccccceeee
Q 018591 139 -GLIYSGSWDK---TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADGK--IKAWGKELGKSHCHSLKGIL 209 (353)
Q Consensus 139 -~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~ 209 (353)
+.|++++.++ .|++||+.+++.. .+..|...+.+++|+++ .|+ +++.++. |++||+.+++ . ..+
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-----~-~~l 262 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----I-RQV 262 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----E-EEC
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-----E-EeC
Confidence 7888888875 9999999988775 45667889999999443 455 6666655 9999998876 2 445
Q ss_pred eccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEE--EEEEcCcEEEEecCC---Ce
Q 018591 210 EGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVL--CVCLVGEFLCSGSAD---KS 281 (353)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~d---g~ 281 (353)
..+.... .+++|+|+|++|++++. ++ .|.+||+.++.. ..+..+...+. +++++|++|++++.+ ..
T Consensus 263 ~~~~~~~-~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~ 336 (415)
T 2hqs_A 263 TDGRSNN-TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH 336 (415)
T ss_dssp CCCSSCE-EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred cCCCCcc-cceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECCCCCEEEEEECcCCceE
Confidence 5555544 89999999998888775 45 577778877631 12222333444 445568888887764 68
Q ss_pred EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC---eEEEEEcCCCC
Q 018591 282 IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK---SLRVWWVSKQS 340 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~~~ 340 (353)
|++||+.+++. ..+..|. .+.+++|+|+ +++|++++.|+ .|++||+..+.
T Consensus 337 i~~~d~~~~~~----~~l~~~~-~~~~~~~spd----g~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 337 IAKQDLATGGV----QVLSSTF-LDETPSLAPN----GTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEETTTCCE----EECCCSS-SCEEEEECTT----SSEEEEEEEETTEEEEEEEETTSCC
T ss_pred EEEEECCCCCE----EEecCCC-CcCCeEEcCC----CCEEEEEEcCCCccEEEEEECCCCc
Confidence 99999998763 2344454 8999999999 99999988877 89999987544
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=2.6e-26 Score=198.40 Aligned_cols=275 Identities=12% Similarity=0.144 Sum_probs=203.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEc--ccCccceeEEeeccccc
Q 018591 25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKV--SRSSENVFRLVDTLPTT 100 (353)
Q Consensus 25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~--~~~~~~~~~~~~~~~~~ 100 (353)
++.++++++.|++|.+||..+++++..+..+.. +..+.++ +++|++++.|+.|++||+ .+.+ .+..+
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----~~~~i--- 218 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----KVAEI--- 218 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----EEEEE---
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----EEEEE---
Confidence 378899999999999999999999999984333 7788887 889999999999999999 4443 22222
Q ss_pred cceeeeecccceeEeecccceeeeeecCCceEEEEEeC------CeEEEec-CCCcEEEEEcCCceeeeeccc-------
Q 018591 101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN------GLIYSGS-WDKTLKVWRVADLKCLESIKA------- 166 (353)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l~~~~-~dg~v~iwd~~~~~~~~~~~~------- 166 (353)
.+......++|+| +++++++ .+++|.+||..+++++..+..
T Consensus 219 -------------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 219 -------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp -------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred -------------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 2344578888985 5677776 489999999999998888754
Q ss_pred ---cC-cceEEEEEeC-C--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcE
Q 018591 167 ---HD-DAVNGLVASK-G--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFV 238 (353)
Q Consensus 167 ---~~-~~v~~i~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i 238 (353)
|. ..+.++.+++ + .+++...++.|.+||..+.+.. ....+. +...+ ..++|+|++++++++ ..+++|
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l---~~~~i~-~~~~~-~~~~~spdg~~l~va~~~~~~v 348 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL---TVTSIG-AAPFL-HDGGWDSSHRYFMTAANNSNKV 348 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC---EEEEEE-CCSSC-CCEEECTTSCEEEEEEGGGTEE
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc---eeEEec-cCcCc-cCceECCCCCEEEEEecCCCeE
Confidence 22 2688888843 2 6778888999999999876511 011222 33334 889999999977654 568899
Q ss_pred EEeeccccccceeeeeeccccceeEEEE-EEc-CcEEEEec-CCCeEEEEecCCCcc----eEEeccccCCCcCeEEEEe
Q 018591 239 MGWEGNVEIVRWKLACETKAHEMAVLCV-CLV-GEFLCSGS-ADKSIGIWKREAFGK----LCRVGAITGHEGPVKCLQA 311 (353)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~l~~~~-~dg~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~ 311 (353)
.+||..+++...........|......+ .++ +..++++. .|++|.+||..+.+. ...+.++.+|.+.+..+++
T Consensus 349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~ 428 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT 428 (543)
T ss_dssp EEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred EEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc
Confidence 9999998843322221112244333333 455 56677765 689999999988211 2377888889888999999
Q ss_pred ecCCCCCCeEEEEcc-------CCCeEEEEEcCCCCCc
Q 018591 312 SPNAVGGGFLLYSGS-------LDKSLRVWWVSKQSST 342 (353)
Q Consensus 312 ~~~~~~~~~~l~s~~-------~dg~i~iw~~~~~~~~ 342 (353)
+|+ +++|++++ .+++|.+||+.+.+..
T Consensus 429 ~pd----g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 429 HPK----SSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CTT----CCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCC----CCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 999 99999987 2779999999998876
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=1.3e-25 Score=194.04 Aligned_cols=310 Identities=10% Similarity=0.075 Sum_probs=219.5
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeC--CCceeeEEeccCceeeEEEEEe------CCEEEEe
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQ--PDLRMFTKFGHGDGSVKAVVTV------GNKVFTA 72 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~------~~~l~s~ 72 (353)
..+++++.++..+.. +.+++|+ |++|++++.|++|++||+ .+++.+..+..+ .....++|+ +++++++
T Consensus 166 ~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~~p~~va~sp~~~~dg~~l~v~ 243 (543)
T 1nir_A 166 GDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-IEARSVESSKFKGYEDRYTIAG 243 (543)
T ss_dssp TTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-SEEEEEEECCSTTCTTTEEEEE
T ss_pred CCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-CCcceEEeCCCcCCCCCEEEEE
Confidence 467888899984333 8899996 899999999999999999 889999888854 456778775 5688888
Q ss_pred c-CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC-CceEEEEEeC---CeEEEecCC
Q 018591 73 H-QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA-DSISCLTVYN---GLIYSGSWD 147 (353)
Q Consensus 73 ~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~---~~l~~~~~d 147 (353)
+ .+++|.+||..+.+ .+..++...... ... ..|. ..+..+.+++ ..+++...+
T Consensus 244 ~~~~~~v~v~D~~t~~-----~~~~i~~~g~~~---------------~~~--~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 244 AYWPPQFAIMDGETLE-----PKQIVSTRGMTV---------------DTQ--TYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp EEESSEEEEEETTTCC-----EEEEEECCEECS---------------SSC--CEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred EccCCeEEEEeccccc-----cceeecccCccc---------------Ccc--ccccCCceEEEEECCCCCEEEEEECCC
Confidence 7 48999999988765 222222100000 000 0133 3788899987 567788889
Q ss_pred CcEEEEEcCCceeee--eccccCcceEEEEEeCC--eEE-EEcCCCcEEEEeCCCCCcccccceeeeec----cCCceee
Q 018591 148 KTLKVWRVADLKCLE--SIKAHDDAVNGLVASKG--IVY-SASADGKIKAWGKELGKSHCHSLKGILEG----HKDVSLN 218 (353)
Q Consensus 148 g~v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~--~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~v~ 218 (353)
+.|.+||+.+.+.+. .+ .+...+.++.|+++ +++ ++..+++|.+||..+++ +...+.. |.... .
T Consensus 302 g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~-----l~~~i~~g~~ph~g~g-~ 374 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR-----LSALVDVGKTPHPGRG-A 374 (543)
T ss_dssp TEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE-----EEEEEECSSSBCCTTC-E
T ss_pred CeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe-----EEEeeccCCCCCCCCC-c
Confidence 999999998765443 33 35667788999443 444 55668999999999987 5555543 33322 2
Q ss_pred EEEEcCC-CCeEEeec-CCCcEEEeeccccc---cceeeeeeccccceeE--EEEEEcCcEEEEec-------CCCeEEE
Q 018591 219 SVVVSDD-GKWVYGGG-SDGFVMGWEGNVEI---VRWKLACETKAHEMAV--LCVCLVGEFLCSGS-------ADKSIGI 284 (353)
Q Consensus 219 ~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~-------~dg~i~i 284 (353)
.+ ++|+ +..++++. .|++|.+||+.+.. ..++....+..+...+ ..+++++++|++++ .+++|.+
T Consensus 375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence 22 4677 66666665 68999999998721 1246667777665544 44566799999987 2679999
Q ss_pred EecCCCcce-EEec--c---ccCCCcCeEEEEeecCCCCCCeEEEEc-----cCCCeEEEEEcCCCCCcccccCC
Q 018591 285 WKREAFGKL-CRVG--A---ITGHEGPVKCLQASPNAVGGGFLLYSG-----SLDKSLRVWWVSKQSSTSDSEEK 348 (353)
Q Consensus 285 w~~~~~~~~-~~~~--~---~~~h~~~v~~~~~~~~~~~~~~~l~s~-----~~dg~i~iw~~~~~~~~~~~~~~ 348 (353)
||+.+++.. ..+. . +..+...+..+.|+|+ |+.|+++ +.|+.|.|||.++++++...+..
T Consensus 454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR----GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS----SSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EECCCCCCCeEEeechhhcccCCCCCceEeccCCCC----CCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 999988754 2221 1 2456778999999999 8888765 35899999999999988877643
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=6.8e-26 Score=190.18 Aligned_cols=260 Identities=11% Similarity=-0.025 Sum_probs=192.4
Q ss_pred CCCcee--eeeeCccCceEEEEEC----------------CcEEEEEeCC------CcEEEEeCCCceeeEEeccCceee
Q 018591 4 KSHRSL--AVLSGHVGSVSSLALC----------------GEFILSASQG------KDIIVWQQPDLRMFTKFGHGDGSV 59 (353)
Q Consensus 4 ~~~~~~--~~l~~h~~~v~~~~~~----------------~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~v 59 (353)
.+++++ ..+.+|...+..++++ +..++.++.+ +.|++||+. +.....+..|...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v 181 (415)
T 2hqs_A 103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPL 181 (415)
T ss_dssp STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCE
T ss_pred CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcc
Confidence 466666 5588998888887764 5677776654 799999987 45566777788899
Q ss_pred EEEEEe--CCEEEEecCCC---cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE
Q 018591 60 KAVVTV--GNKVFTAHQDS---RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL 134 (353)
Q Consensus 60 ~~~~~~--~~~l~s~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 134 (353)
.+++|+ +++|++++.++ .|++||+++++.. .+..|...+.++
T Consensus 182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------------------------------~l~~~~~~~~~~ 228 (415)
T 2hqs_A 182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------------------------------QVASFPRHNGAP 228 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------------------------------EEECCSSCEEEE
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------------------------------EeecCCCcccCE
Confidence 999998 78899998875 9999999877521 122577789999
Q ss_pred EEeC--CeEE-EecCCCc--EEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcC-CC--cEEEEeCCCCCccccc
Q 018591 135 TVYN--GLIY-SGSWDKT--LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASA-DG--KIKAWGKELGKSHCHS 204 (353)
Q Consensus 135 ~~~~--~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~-dg--~i~iwd~~~~~~~~~~ 204 (353)
+|+| +.|+ +++.++. |++||+.+++. ..+..|...+.+++|+++ .|++++. ++ .|.+||+.+++
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----- 302 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----- 302 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-----
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-----
Confidence 9999 5566 6666654 99999988766 566678889999999443 5766665 45 67778888765
Q ss_pred ceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccceeeeeecccc-ceeEEEEEEcCcEEEEecCCC
Q 018591 205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETKAH-EMAVLCVCLVGEFLCSGSADK 280 (353)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~dg 280 (353)
. ..+..+... +..++|+|+|++|++++.+ ..|.+||+.++.. . .+..+ .....+++++|++|++++.++
T Consensus 303 ~-~~l~~~~~~-~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----~-~l~~~~~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 303 P-QRITWEGSQ-NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----Q-VLSSTFLDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp C-EECCCSSSE-EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----E-ECCCSSSCEEEEECTTSSEEEEEEEET
T ss_pred E-EEEecCCCc-ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE----E-EecCCCCcCCeEEcCCCCEEEEEEcCC
Confidence 2 233334443 4889999999999888764 5899999988732 1 12222 333445556789888888776
Q ss_pred ---eEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 281 ---SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 281 ---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
.|++||+... ....+.+|.+.|.+++|+|.
T Consensus 376 ~~~~l~~~d~~g~----~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 376 MGSVLNLVSTDGR----FKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp TEEEEEEEETTSC----CEEECCCSSSEEEEEEECCC
T ss_pred CccEEEEEECCCC----cEEEeeCCCCCCcCCccccc
Confidence 8999998754 34557889999999999997
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=5.9e-23 Score=167.69 Aligned_cols=275 Identities=9% Similarity=0.037 Sum_probs=183.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC-CCcEEEEEcccCccceeEEeeccccccc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ-DSRIRVWKVSRSSENVFRLVDTLPTTKD 102 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 102 (353)
+..+++++.++.|++||..+++....+..+.... .++++ ++++++++. ++.|.+||+.++... ..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----~~------- 77 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----VV------- 77 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----EE-------
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----EE-------
Confidence 5568888899999999999999988887766666 88887 666666554 889999999877620 11
Q ss_pred eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC---cEEEEEcCCceeeeeccccCcceEEEEEe
Q 018591 103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK---TLKVWRVADLKCLESIKAHDDAVNGLVAS 177 (353)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~i~~~ 177 (353)
.+..+..+..+++|+| ++++++..++ .|.+||+.+++.+..+.. .....+++|+
T Consensus 78 --------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s 136 (331)
T 3u4y_A 78 --------------------AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS 136 (331)
T ss_dssp --------------------EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC
T ss_pred --------------------ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC
Confidence 1113444554589998 6677555553 899999999998887765 4456899994
Q ss_pred CC--eEE-EEcCCCc-EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCCCcEEEeeccccccceee
Q 018591 178 KG--IVY-SASADGK-IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSDGFVMGWEGNVEIVRWKL 252 (353)
Q Consensus 178 ~~--~l~-~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~ 252 (353)
++ .++ +...++. +.+|++.............+ .....+ ..++|+|++++++ ++..++.|.+||+.++.... .
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~-~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~ 213 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRP-FNITFTPDGNFAFVANLIGNSIGILETQNPENIT-L 213 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSE-EEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-E
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCc-cceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-e
Confidence 43 444 4455688 99999986441111111122 222334 8999999999654 55578999999998774310 0
Q ss_pred eeeccc-cceeEEEEEEcCcEEEEe-cCCCeEEEEecCCCcceEEeccccCC----Cc---CeEEEEeecCCCCCCeEEE
Q 018591 253 ACETKA-HEMAVLCVCLVGEFLCSG-SADKSIGIWKREAFGKLCRVGAITGH----EG---PVKCLQASPNAVGGGFLLY 323 (353)
Q Consensus 253 ~~~~~~-~~~~v~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~h----~~---~v~~~~~~~~~~~~~~~l~ 323 (353)
...+.. ....-.+++++|++++++ ..++.|.+||..+++.. .+..+..+ .. ....++|+|+ +++|+
T Consensus 214 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~ 288 (331)
T 3u4y_A 214 LNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS-FVKSFGHGLLIDPRPLFGANQMALNKT----ETKLF 288 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE-EEEEEECCCCCCCGGGTTCCCEEECTT----SSEEE
T ss_pred eeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee-eecccccccccCCCCcccccceEECCC----CCEEE
Confidence 222222 222335566778866554 46888999999886531 12222211 22 2356899999 87775
Q ss_pred E-ccCCCeEEEEEcCCCCC
Q 018591 324 S-GSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 324 s-~~~dg~i~iw~~~~~~~ 341 (353)
+ +..++.|.+|++.....
T Consensus 289 v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 289 ISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEETTTTEEEEEETTSCEE
T ss_pred EecCCCCcEEEEEecCCcc
Confidence 4 55567999999987653
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=2.6e-23 Score=170.60 Aligned_cols=269 Identities=10% Similarity=0.158 Sum_probs=173.8
Q ss_pred EEEEEeCCCcEEEEeCC-Cc--eeeEEeccCceeeEEEEEe--CCEEEEecCC-CcEEEEEcc--cCccceeEEeecccc
Q 018591 28 FILSASQGKDIIVWQQP-DL--RMFTKFGHGDGSVKAVVTV--GNKVFTAHQD-SRIRVWKVS--RSSENVFRLVDTLPT 99 (353)
Q Consensus 28 ~l~s~~~dg~v~vwd~~-~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d-g~i~~w~~~--~~~~~~~~~~~~~~~ 99 (353)
++++++.|+.|++||+. ++ +.+..+ .+...+..++|+ +++|++++.+ +.|++|+++ ++.. ..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---~~~~~~-- 80 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---TFAAES-- 80 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---EEEEEE--
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---eecccc--
Confidence 44455789999999985 33 333333 356678889997 7778888776 999999997 3331 111111
Q ss_pred ccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEEEc---CCceeeeeccccCcceEE
Q 018591 100 TKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVWRV---ADLKCLESIKAHDDAVNG 173 (353)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~---~~~~~~~~~~~~~~~v~~ 173 (353)
.....+..++|+| +.++++ ..++.|.+||+ ...+.+..+.. ...+.+
T Consensus 81 --------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~ 133 (343)
T 1ri6_A 81 --------------------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHS 133 (343)
T ss_dssp --------------------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCC
T ss_pred --------------------------ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceE
Confidence 1122677899998 556555 45889999999 44455555544 345788
Q ss_pred EEEeCC--eEEEEc-CCCcEEEEeCCC-CCccccccee--eeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeecccc
Q 018591 174 LVASKG--IVYSAS-ADGKIKAWGKEL-GKSHCHSLKG--ILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGNVE 246 (353)
Q Consensus 174 i~~~~~--~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~ 246 (353)
++|+++ .+++++ .++.|.+||+.+ ++.. ... ....+....+..++|+|+++++++ +..++.|.+|++...
T Consensus 134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~ 210 (343)
T 1ri6_A 134 ANISPDNRTLWVPALKQDRICLFTVSDDGHLV---AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 210 (343)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEE---EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred EEECCCCCEEEEecCCCCEEEEEEecCCCcee---eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 889433 566665 899999999987 4310 111 223333333488999999997654 458899999999642
Q ss_pred ccceeeeee---cccc---ceeE--EEEEEcCcEEE-EecCCCeEEEEecCC-CcceEEeccccCCCcCeEEEEeecCCC
Q 018591 247 IVRWKLACE---TKAH---EMAV--LCVCLVGEFLC-SGSADKSIGIWKREA-FGKLCRVGAITGHEGPVKCLQASPNAV 316 (353)
Q Consensus 247 ~~~~~~~~~---~~~~---~~~v--~~~~~~~~~l~-~~~~dg~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (353)
......... .... ...+ .++++++++|+ ++..++.|++||+.. ......+..+..+.. +.+++|+|+
T Consensus 211 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~d-- 287 (343)
T 1ri6_A 211 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHS-- 287 (343)
T ss_dssp TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTT--
T ss_pred CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCC--
Confidence 211111111 1111 1223 44555677666 555899999999983 122334444544444 899999999
Q ss_pred CCCeEEEEcc-CCCeEEEEEcC
Q 018591 317 GGGFLLYSGS-LDKSLRVWWVS 337 (353)
Q Consensus 317 ~~~~~l~s~~-~dg~i~iw~~~ 337 (353)
+++|++++ .|+.|.+|++.
T Consensus 288 --g~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 288 --GKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp --SSEEEEECTTTCEEEEEEEE
T ss_pred --CCEEEEecCCCCeEEEEEEc
Confidence 88777776 68999999655
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=4.2e-23 Score=168.90 Aligned_cols=270 Identities=9% Similarity=0.072 Sum_probs=187.6
Q ss_pred cEEEEEeCCCcEEEEeCCCceeeEEeccCce--eeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591 27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDG--SVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK 101 (353)
Q Consensus 27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 101 (353)
++|++++.++.|++||+.+++.+..+..... .+..++++ ++.+ +++..++.|.+||+.+++ .+..++...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-----~~~~~~~~~ 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-----TLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-----EEEEEECCB
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-----eEeeEEcCC
Confidence 5899999999999999999999888764332 46778887 5555 566678899999998775 221111100
Q ss_pred ceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec------------CCCcEEEEEcCCceeeeecccc
Q 018591 102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS------------WDKTLKVWRVADLKCLESIKAH 167 (353)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~ 167 (353)
. ..|...+..++|++ +.++++. .++.|.+||+.+++.+..+..
T Consensus 77 ~----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 77 P----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp T----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred c----------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 0 00122455788888 5777775 579999999999888877754
Q ss_pred CcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC---------
Q 018591 168 DDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG--------- 236 (353)
Q Consensus 168 ~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------- 236 (353)
...+.++++++ + .++++ ++.|.+||+.+++ ....+..+... ..+.|+|+++.++..+..+
T Consensus 134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~-----~~~~~~~~~~~--~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT-----LVEDKPIQSWE--AETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE-----EEEEECSTTTT--TTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc-----EeeeeeccccC--CCceeCCCccEEeeeccCCCceeeeeec
Confidence 45677888843 3 56666 6899999999876 44444433311 2337899988776655433
Q ss_pred ---------------cEEEeeccccccceeeeeeccccceeE--EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc
Q 018591 237 ---------------FVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299 (353)
Q Consensus 237 ---------------~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 299 (353)
.|.+||+.+++.. ......+...+ .++++++++++++ ++.|++||+.+++. +..+
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~---~~~~ 276 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS---IKRV 276 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE---EEEE
T ss_pred cccccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC---ccee
Confidence 3688998887432 12222333334 4455568888888 79999999988763 3333
Q ss_pred cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 300 ~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
.. ...+.+++|+|+ +++|++++.|+.|++||+.+++.+....
T Consensus 277 ~~-~~~~~~~~~s~d----g~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 277 PL-PHSYYSVNVSTD----GSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EC-SSCCCEEEECTT----SCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred cC-CCceeeEEECCC----CCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 32 346789999999 9999989999999999999988766543
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=5.4e-23 Score=185.88 Aligned_cols=274 Identities=10% Similarity=0.009 Sum_probs=194.6
Q ss_pred cCceEEEEEC--CcEEEEEeC-CC-----cEEEEeCCCceeeEEeccCc------------------------eeeEEEE
Q 018591 16 VGSVSSLALC--GEFILSASQ-GK-----DIIVWQQPDLRMFTKFGHGD------------------------GSVKAVV 63 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~-dg-----~v~vwd~~~~~~~~~~~~~~------------------------~~v~~~~ 63 (353)
...|.+++|+ |++|++++. |+ .|++||+.+++....+..+. ..+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 4579999996 899999998 88 99999999998877775543 3478888
Q ss_pred Ee--CCEEEEecCCCcEEEEEcccC---ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591 64 TV--GNKVFTAHQDSRIRVWKVSRS---SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN 138 (353)
Q Consensus 64 ~~--~~~l~s~~~dg~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 138 (353)
|+ +++|++++. +.|++||+.++ .. ..+..|...+..++|+|
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~---------------------------------~~l~~~~~~~~~~~~SP 161 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV---------------------------------RQLTHGEGFATDAKLSP 161 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC---------------------------------CBCCCSSSCEEEEEECT
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE---------------------------------EEcccCCcccccccCCC
Confidence 88 788888876 89999999876 31 11125677899999999
Q ss_pred --CeEEEecCCCcEEEEEcCCceeeeeccccCcc----------------eEEEEEeCC--eEEEEcCCC----------
Q 018591 139 --GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA----------------VNGLVASKG--IVYSASADG---------- 188 (353)
Q Consensus 139 --~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------------v~~i~~~~~--~l~~~~~dg---------- 188 (353)
+.|+.++ ++.|++||+.+++.......+... +.++.|+++ .|++++.|+
T Consensus 162 DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~ 240 (741)
T 2ecf_A 162 KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE 240 (741)
T ss_dssp TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence 6677766 569999999988776655444332 477889443 677776665
Q ss_pred -----------------------cEEEEeCCC-CCcccccceeeee--ccCCceeeEEEEcCCCCeEEeecC-----CCc
Q 018591 189 -----------------------KIKAWGKEL-GKSHCHSLKGILE--GHKDVSLNSVVVSDDGKWVYGGGS-----DGF 237 (353)
Q Consensus 189 -----------------------~i~iwd~~~-~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-----dg~ 237 (353)
.|.+||+.+ ++ ...... .+... +..++| |||++|++++. +..
T Consensus 241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~~~-~~~~~~-pDg~~l~~~~~~~~~~~~~ 313 (741)
T 2ecf_A 241 VYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-----TQWIDLGKEQDIY-LARVNW-RDPQHLSFQRQSRDQKKLD 313 (741)
T ss_dssp ECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-----CEEECCCSCSSEE-EEEEEE-EETTEEEEEEEETTSSEEE
T ss_pred CCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-----eEEecCCCCcceE-EEEEEe-CCCCEEEEEEecccCCeEE
Confidence 789999988 75 222222 23333 489999 99999987653 568
Q ss_pred EEEeeccccccceeeeeecccc--ceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEE-EeecC
Q 018591 238 VMGWEGNVEIVRWKLACETKAH--EMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCL-QASPN 314 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~ 314 (353)
|++||+.++............. ......++++|+++++++.||.++||.++.... ...+..|...|..+ .|+|+
T Consensus 314 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~d 390 (741)
T 2ecf_A 314 LVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVDEK 390 (741)
T ss_dssp EEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEETT
T ss_pred EEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEeCC
Confidence 9999998874322111111000 112345667788999999999888887763222 34456677888887 59999
Q ss_pred CCCCCeEE-EEccCCC--eEEEEEcCC
Q 018591 315 AVGGGFLL-YSGSLDK--SLRVWWVSK 338 (353)
Q Consensus 315 ~~~~~~~l-~s~~~dg--~i~iw~~~~ 338 (353)
++.| ++++.|+ .+++|++..
T Consensus 391 ----g~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 391 ----AGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ----TTEEEEEECSSCTTCBEEEEEET
T ss_pred ----CCEEEEEEeCCCCceEEEEEEEc
Confidence 7655 5566565 899999864
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=7.7e-22 Score=162.52 Aligned_cols=273 Identities=11% Similarity=0.068 Sum_probs=188.1
Q ss_pred ccCceEEEEEC--CcEEEEEeC-------CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE-EEecCCCcEEEEE
Q 018591 15 HVGSVSSLALC--GEFILSASQ-------GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRIRVWK 82 (353)
Q Consensus 15 h~~~v~~~~~~--~~~l~s~~~-------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~~w~ 82 (353)
....+..++|+ ++++++++. ++.|.+||..+++.+..+... ..+..+.++ ++++ ++...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 34568889996 677777764 568999999999988888653 346677777 6644 5556679999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec--CCCcEEEEEcCCc
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS--WDKTLKVWRVADL 158 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~--~dg~v~iwd~~~~ 158 (353)
.++++ .+..++..... ..-......+.++.+++ +.+++++ .++.|.+||..++
T Consensus 118 ~~~~~-----~~~~~~~~~~~------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 118 AKTGE-----VKGRLVLDDRK------------------RTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp TTTCC-----EEEEEESCCCC------------------CCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred CCCCe-----eEEEEecCCCc------------------cccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 98876 22222110000 00000112367899988 5566654 5789999999999
Q ss_pred eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeec----cCCceeeEEEEcCCCCeEEee
Q 018591 159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEG----HKDVSLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~ 232 (353)
+.+..+..+...+.++++++ +.+++++.++.|.+||..+++ ....+.. +...+ ..++|+|++++++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK-----ILSRKKLLDDGKEHFF-INISLDTARQRAFIT 248 (353)
T ss_dssp EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-----EEEEEECCCSSSCCCE-EEEEEETTTTEEEEE
T ss_pred ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe-----EEEEEEcCCCCCCccc-ceEEECCCCCEEEEE
Confidence 99888875666688888843 478888889999999999886 4433332 23333 789999999977666
Q ss_pred cC-CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE-EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591 233 GS-DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC-SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ 310 (353)
Q Consensus 233 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~ 310 (353)
+. ++.|.+||..+++.. ............+++++++++ +...++.|.+||..+++. +..+.. ...+.+++
T Consensus 249 ~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---~~~~~~-~~~~~~~~ 320 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNIL----AKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV---VKTFDT-PTHPNSLA 320 (353)
T ss_dssp ESSSSEEEEEETTTCCEE----EEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE---EEEEEC-CSEEEEEE
T ss_pred eCCCCEEEEEECCCCcEE----EEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE---EEEEec-CCCCCeEE
Confidence 54 589999999887432 222223334466777888555 455799999999998763 333333 34689999
Q ss_pred eecCCCCCCeEEEEccCCC
Q 018591 311 ASPNAVGGGFLLYSGSLDK 329 (353)
Q Consensus 311 ~~~~~~~~~~~l~s~~~dg 329 (353)
|+|+ +++|+.+..++
T Consensus 321 ~s~d----g~~l~v~~~~~ 335 (353)
T 3vgz_A 321 LSAD----GKTLYVSVKQK 335 (353)
T ss_dssp ECTT----SCEEEEEEECC
T ss_pred EcCC----CCEEEEEEccc
Confidence 9999 88777666553
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=5.9e-21 Score=156.88 Aligned_cols=269 Identities=12% Similarity=0.170 Sum_probs=170.1
Q ss_pred CCcEEEEeC--CCceeeE-EeccCceeeEEEEEe--CCEEEEecC---CCcEEEEEcccCccceeEEeeccccccceeee
Q 018591 35 GKDIIVWQQ--PDLRMFT-KFGHGDGSVKAVVTV--GNKVFTAHQ---DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGK 106 (353)
Q Consensus 35 dg~v~vwd~--~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (353)
++.|.+|++ .+++... ....+......++|+ ++ |++++. ++.|++|+++++... .+..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---~~~~---------- 80 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---KLNT---------- 80 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---EEEE----------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---Eeee----------
Confidence 456777765 4565443 223334566778887 45 666554 689999999765421 1111
Q ss_pred ecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCC---ceeeeeccc---------cCcce
Q 018591 107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVAD---LKCLESIKA---------HDDAV 171 (353)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~---~~~~~~~~~---------~~~~v 171 (353)
+..+...+..++|+| ++|++++ .++.|.+|++.. .+.+..+.. +...+
T Consensus 81 -----------------~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~ 143 (347)
T 3hfq_A 81 -----------------VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHI 143 (347)
T ss_dssp -----------------EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCE
T ss_pred -----------------eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCc
Confidence 114566778899998 6677766 789999999962 233333321 12347
Q ss_pred EEEEEeC-C-eEEEEcCCCcEEEEeCC-CCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeeccccc
Q 018591 172 NGLVASK-G-IVYSASADGKIKAWGKE-LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGNVEI 247 (353)
Q Consensus 172 ~~i~~~~-~-~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~ 247 (353)
.++++++ + .+++...++.|.+||+. +++. ................++|+|+|+++++ ...++.+.+|++....
T Consensus 144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~---~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 220 (347)
T 3hfq_A 144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL---SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT 220 (347)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECTTSCE---EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eEEEECCCCcEEEEeCCCCEEEEEEECCCCcE---EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 8899933 3 56666678899999998 3431 1112222222222378999999996655 5678899999987522
Q ss_pred cceeeeeeccccc------eeE--EEEEEcCcEE-EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC
Q 018591 248 VRWKLACETKAHE------MAV--LCVCLVGEFL-CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG 318 (353)
Q Consensus 248 ~~~~~~~~~~~~~------~~v--~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 318 (353)
............. ..+ .+++++|++| ++...++.|.+|++........+..+..+...+..++|+|+
T Consensus 221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spd---- 296 (347)
T 3hfq_A 221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPT---- 296 (347)
T ss_dssp TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTT----
T ss_pred CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCC----
Confidence 1222222211111 223 4455678877 55667899999999754344466666666777899999999
Q ss_pred CeEEEEccC-CCeEEEEEc--CCCCC
Q 018591 319 GFLLYSGSL-DKSLRVWWV--SKQSS 341 (353)
Q Consensus 319 ~~~l~s~~~-dg~i~iw~~--~~~~~ 341 (353)
+++|++++. ++.|.+|++ ++++.
T Consensus 297 g~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 297 EAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 888877765 589999955 44443
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.8e-22 Score=161.98 Aligned_cols=250 Identities=10% Similarity=0.018 Sum_probs=172.4
Q ss_pred EEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEccc-CccceeEEeeccccccceeeee
Q 018591 31 SASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR-SSENVFRLVDTLPTTKDYLGKF 107 (353)
Q Consensus 31 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~ 107 (353)
+++.|+.|++||+.+++... +..|...|.+++|+ +++|++++ ++.|++||+++ +... ...
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-----~~~---------- 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-----KVD---------- 79 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----ECC----------
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----Eec----------
Confidence 35678999999999988764 44468889999998 77888876 78999999987 5421 111
Q ss_pred cccceeEeecccceeeeeec-CCceEEEEEeC--CeEEEec--CCCcEEEE--EcCCceeeeeccccCcceEEEEEeCC-
Q 018591 108 MKQSNYVQTRRHHKRLWIEH-ADSISCLTVYN--GLIYSGS--WDKTLKVW--RVADLKCLESIKAHDDAVNGLVASKG- 179 (353)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~--~~l~~~~--~dg~v~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~- 179 (353)
..+ ...+.++.|+| ..+++++ .++...+| +..+++ ...+..+ ..+..++|+++
T Consensus 80 -----------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg 140 (297)
T 2ojh_A 80 -----------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDG 140 (297)
T ss_dssp -----------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTS
T ss_pred -----------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCC
Confidence 123 46788899998 6788877 33445555 444444 3444333 34888899433
Q ss_pred -eEE-EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeeccccccceeeeeec
Q 018591 180 -IVY-SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIVRWKLACET 256 (353)
Q Consensus 180 -~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~ 256 (353)
.++ ++..++.+++|+++.... ....+..+...+ ..++|+|++++++.++ .++.+++|++.... .....+
T Consensus 141 ~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---~~~~~~ 212 (297)
T 2ojh_A 141 KSFTYCGIRDQVFDIYSMDIDSG----VETRLTHGEGRN-DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---SSVERI 212 (297)
T ss_dssp SEEEEEEEETTEEEEEEEETTTC----CEEECCCSSSCE-EEEEECTTSSEEEEEECTTSSCEEEEEETTS---SCEEEC
T ss_pred CEEEEEECCCCceEEEEEECCCC----cceEcccCCCcc-ccceECCCCCEEEEEecCCCCccEEEECCCC---CCcEEE
Confidence 454 788899999998643221 223444444444 9999999999887665 58999999986322 222334
Q ss_pred cccceeEEEEEE--cCcEEEEecCC-----------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE
Q 018591 257 KAHEMAVLCVCL--VGEFLCSGSAD-----------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY 323 (353)
Q Consensus 257 ~~~~~~v~~~~~--~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~ 323 (353)
..+...+..+.+ ++++|++++.+ +.|++||+.+++. ..+..+.+|...+.+++|+|+ +++|+
T Consensus 213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spd----g~~l~ 287 (297)
T 2ojh_A 213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPD----GDEFA 287 (297)
T ss_dssp CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTTTSCSCCBCTT----SSEEE
T ss_pred ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCcccccceECCC----CCEEE
Confidence 445555655554 68888887765 5799999988653 244455578889999999999 88888
Q ss_pred EccCCC
Q 018591 324 SGSLDK 329 (353)
Q Consensus 324 s~~~dg 329 (353)
+++.|.
T Consensus 288 ~~~~~~ 293 (297)
T 2ojh_A 288 YVRYFP 293 (297)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 887654
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=4.7e-21 Score=178.97 Aligned_cols=309 Identities=10% Similarity=0.005 Sum_probs=190.9
Q ss_pred eeeeeeCccCceEEEEEC--CcEEEEEeCC------CcEEEEeCCCceeeEEeccCceee-------EEEEEe--CCEEE
Q 018591 8 SLAVLSGHVGSVSSLALC--GEFILSASQG------KDIIVWQQPDLRMFTKFGHGDGSV-------KAVVTV--GNKVF 70 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~v-------~~~~~~--~~~l~ 70 (353)
....+.+|...+.+++|+ |++||+++.+ ..|++||+.+++ ...+..|...+ ..++|+ ++.++
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence 356788999999999996 8999988653 479999998877 56778888888 899998 66677
Q ss_pred EecCC------CcEEEEEcccCccceeEEeecccccc-----ceeeeec--------------ccce-eEeecccceeee
Q 018591 71 TAHQD------SRIRVWKVSRSSENVFRLVDTLPTTK-----DYLGKFM--------------KQSN-YVQTRRHHKRLW 124 (353)
Q Consensus 71 s~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------------~~~~-~~~~~~~~~~~~ 124 (353)
+++.+ ..|..|++.++..... ...+... ..+.... .... +..........+
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l---~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l 199 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI 199 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred EECCcCCCcccceEEEEECCCCCeEEe---cCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence 77654 3577777766542111 0000000 0000000 0000 000000111222
Q ss_pred eecCCceEEEEEeC-CeEEEecCCCcEEEEEcCC----------------------------------------ceeeee
Q 018591 125 IEHADSISCLTVYN-GLIYSGSWDKTLKVWRVAD----------------------------------------LKCLES 163 (353)
Q Consensus 125 ~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~----------------------------------------~~~~~~ 163 (353)
.+|...+.++.|++ ..+++++.|+.+.+|.+.. ...+..
T Consensus 200 ~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~ 279 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEK 279 (1045)
T ss_dssp ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEE
T ss_pred cCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeee
Confidence 34555555555555 2333444444445554321 111112
Q ss_pred ccc-----------cCcceEEEEEe-CC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591 164 IKA-----------HDDAVNGLVAS-KG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV 229 (353)
Q Consensus 164 ~~~-----------~~~~v~~i~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 229 (353)
+.. |...+.+++|+ ++ .+++++ ++.+.+|+...+. ...+..+....+..++|+ +++.+
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY------VLKVPEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB------EEECSCCSCEEEEEECSS-SEEEE
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc------eEEccCCCcceEEeeeEc-CCCeE
Confidence 222 22246666666 54 455444 6677777776554 222344444234889999 99999
Q ss_pred EeecCCCcEE-EeeccccccceeeeeeccccceeEEEE--EEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCe
Q 018591 230 YGGGSDGFVM-GWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPV 306 (353)
Q Consensus 230 ~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v 306 (353)
+.++.++.+. +|+...+. .. .+..+...+..+ +++|++|++++.++.|++||+.+++ ......+|.+.+
T Consensus 352 ~~~s~~~~l~~~~d~~~~~----~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~---~~~~~~~~~~~v 423 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGK----AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK---PTVIERSREAMI 423 (1045)
T ss_dssp EEEETTEEEEEEEETTTCC----EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECSSSCC
T ss_pred EEEECCCceEEEEECCCCC----ce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc---eEEeccCCCCCc
Confidence 9888888888 88987762 11 122444445444 5569999999999999999999876 333445788999
Q ss_pred EEEEeecCCCCCCeEEEEccCCC----------eEEEEEcCCCC
Q 018591 307 KCLQASPNAVGGGFLLYSGSLDK----------SLRVWWVSKQS 340 (353)
Q Consensus 307 ~~~~~~~~~~~~~~~l~s~~~dg----------~i~iw~~~~~~ 340 (353)
.+++|+|| |++|++++.++ .|++||+.+++
T Consensus 424 ~~~~~SpD----G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 424 TDFTISDN----SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CCEEECTT----SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred cceEECCC----CCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99999999 99998887654 99999998875
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.1e-21 Score=177.45 Aligned_cols=286 Identities=10% Similarity=0.045 Sum_probs=188.7
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcccee
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVF 91 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~ 91 (353)
.|.+++|+ |++|++++. +.|++||+.+++ ....+..|...+..+.|+ |++|+.++. +.|++||+.++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~-- 185 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQM-- 185 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEE--
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEE--
Confidence 38899996 889999887 999999998873 344566677889999998 788888874 69999999876521
Q ss_pred EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC---------------------
Q 018591 92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK--------------------- 148 (353)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg--------------------- 148 (353)
.........+. . ....-+.......+..+.|+| +.|++++.|+
T Consensus 186 ---~~~~~~~~~~~----------~-g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 186 ---QLTADGSTTIG----------N-GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp ---ECCCCCCSSEE----------E-SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred ---EeccCCcccee----------c-cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 11100000000 0 000000000112356788998 6788777665
Q ss_pred ------------cEEEEEcCC-ceeeeecc--ccCcceEEEEEeCC--eEEEEcC-----CCcEEEEeCCCCCcccccce
Q 018591 149 ------------TLKVWRVAD-LKCLESIK--AHDDAVNGLVASKG--IVYSASA-----DGKIKAWGKELGKSHCHSLK 206 (353)
Q Consensus 149 ------------~v~iwd~~~-~~~~~~~~--~~~~~v~~i~~~~~--~l~~~~~-----dg~i~iwd~~~~~~~~~~~~ 206 (353)
.|.+||+.+ ++...... .|...+..++| ++ .|+.++. +..|++||+.+++ ..
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-----~~ 325 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-----QR 325 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-----EE
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-----eE
Confidence 789999988 77654432 46778899999 54 5665543 5679999999887 44
Q ss_pred eeeeccCCc---eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE---EEEEcCcEEE-EecCC
Q 018591 207 GILEGHKDV---SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL---CVCLVGEFLC-SGSAD 279 (353)
Q Consensus 207 ~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~l~-~~~~d 279 (353)
..+..+... .+..++|+|||+++++++.+|.+++|.+.... . ...+..+...+. .++++++.|+ +++.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 326 VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG---K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS---C-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC---C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence 444444332 23688999999999999999988888776321 1 233444444443 4566787664 55555
Q ss_pred C--eEEEEecCC-CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC----CeEEEEEcCCC
Q 018591 280 K--SIGIWKREA-FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD----KSLRVWWVSKQ 339 (353)
Q Consensus 280 g--~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~ 339 (353)
+ .+++|++.. ++. ...+.. ...+.+++|+|+ +++|+....+ +.+.+|+....
T Consensus 402 ~~~~~~l~~~~~~g~~---~~~l~~-~~~~~~~~~spd----g~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 402 SARESQIYAVPLQGGQ---PQRLSK-APGMHSASFARN----ASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CTTCBEEEEEETTCCC---CEECCC-SCSEEEEEECTT----SSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCceEEEEEEEcCCCC---eeeccc-CCCceEEEECCC----CCEEEEEecCCCCCCeEEEEEcCCC
Confidence 5 899999864 332 233333 566889999999 8877766443 57889987543
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=1.6e-21 Score=175.29 Aligned_cols=287 Identities=11% Similarity=0.071 Sum_probs=187.4
Q ss_pred CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEccc-----Ccc
Q 018591 17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR-----SSE 88 (353)
Q Consensus 17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~-----~~~ 88 (353)
..|.+++|+ .+.++.+ .|+.|++||+.+++..... .+...+..++|+ ++.|+.+ .++.|++|++.+ ++.
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 569999997 3455444 4599999999988766544 345678888887 7788885 679999999987 542
Q ss_pred ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec---------------------
Q 018591 89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS--------------------- 145 (353)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~--------------------- 145 (353)
... .......+ .... . +...+...+.++.|+| +.|++++
T Consensus 159 ~~~-----~~~~~~~~----------~~g~-~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 159 IAV-----TIDGTETL----------VYGQ-A--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp EES-----CSCCBTTE----------EESS-C--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred EEe-----ccCCCCCe----------Eccc-c--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence 110 00000000 0000 0 1112334467889998 6777776
Q ss_pred ------------CCCcEEEEEcCCceeeeecc--ccCcceEEEEEeCC--eEEEEcCCC-----cEEEEeCCCCCccccc
Q 018591 146 ------------WDKTLKVWRVADLKCLESIK--AHDDAVNGLVASKG--IVYSASADG-----KIKAWGKELGKSHCHS 204 (353)
Q Consensus 146 ------------~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~--~l~~~~~dg-----~i~iwd~~~~~~~~~~ 204 (353)
.+..|++||+.+++...... .|...+.+++|+++ .+++++.++ .|++||+.+++.
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~---- 296 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF---- 296 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE----
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce----
Confidence 44679999999887655442 46678999999443 677777665 899999998731
Q ss_pred ceeeeeccCCc---eeeEEEEcC--CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE---EEEEEcCcEEEE-
Q 018591 205 LKGILEGHKDV---SLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV---LCVCLVGEFLCS- 275 (353)
Q Consensus 205 ~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~~- 275 (353)
........... .+..++|+| +|++++++..++.+++|.+.... .....+..+...+ ..++++++.|+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 297 VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEE
T ss_pred eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEE
Confidence 22222111111 136789999 99999999999999999886221 2233334444444 345556776654
Q ss_pred ecCCC----eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC----CeEEEEEcCCCC
Q 018591 276 GSADK----SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD----KSLRVWWVSKQS 340 (353)
Q Consensus 276 ~~~dg----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~ 340 (353)
+..++ .|+.||..+++ ... + .|...+.+++|+|+ +++++....+ +.|.+||+.+++
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~-~~~---l-~~~~~~~~~~~spd----g~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGK-TKD---L-TPESGMHRTQLSPD----GSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCC-CEE---S-CCSSSEEEEEECTT----SSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ecCCCCceEEEEEEEcCCCC-cee---c-cCCCceEEEEECCC----CCEEEEEecCCCCCcEEEEEECCCCe
Confidence 44444 67777777654 222 2 25677999999999 8887766443 569999998775
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=7.3e-22 Score=177.52 Aligned_cols=272 Identities=12% Similarity=0.082 Sum_probs=179.4
Q ss_pred eEEEEECCcEEEEEeCCCcEEEEeCCCcee--eEEeccCc----------------eeeEEEEEe-CCEEEEecCCCcEE
Q 018591 19 VSSLALCGEFILSASQGKDIIVWQQPDLRM--FTKFGHGD----------------GSVKAVVTV-GNKVFTAHQDSRIR 79 (353)
Q Consensus 19 v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~----------------~~v~~~~~~-~~~l~s~~~dg~i~ 79 (353)
+..+.|.|+.+++++.|+ | +||+.+++. ...+..+. ..|.+++|+ .+.++.+ .++.|+
T Consensus 28 ~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~ 104 (706)
T 2z3z_A 28 VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLV 104 (706)
T ss_dssp CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEE
T ss_pred CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEE
Confidence 444556577788888888 8 999999987 33333221 468999998 4444444 459999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~ 157 (353)
+||+.+++.. .+..+...+.+++|+| +.|++ ..++.|++||+.+
T Consensus 105 ~~d~~~~~~~---------------------------------~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~ 150 (706)
T 2z3z_A 105 GFDMLARKVT---------------------------------YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGK 150 (706)
T ss_dssp EEETTTTEEE---------------------------------EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBC
T ss_pred EEECCCCceE---------------------------------EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCc
Confidence 9999876411 1113556677889999 56766 4789999999988
Q ss_pred -----ceeeeeccccCcc--------------eEEEEEeCC--eEEEEc-------------------------------
Q 018591 158 -----LKCLESIKAHDDA--------------VNGLVASKG--IVYSAS------------------------------- 185 (353)
Q Consensus 158 -----~~~~~~~~~~~~~--------------v~~i~~~~~--~l~~~~------------------------------- 185 (353)
++.......+... +.++.|+++ .|++++
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 7766554443332 478899443 677776
Q ss_pred --CCCcEEEEeCCCCCcccccceeeee--ccCCceeeEEEEcCCCCeEEeecCCC-----cEEEeeccccccceeeeeec
Q 018591 186 --ADGKIKAWGKELGKSHCHSLKGILE--GHKDVSLNSVVVSDDGKWVYGGGSDG-----FVMGWEGNVEIVRWKLACET 256 (353)
Q Consensus 186 --~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~ 256 (353)
.+..|++||+.+++ ...... .+... +..++|+|||++|++++.++ .|.+||+.++..........
T Consensus 231 ~~~~~~l~~~d~~~~~-----~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~ 304 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGK-----TVYLQTGEPKEKF-LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET 304 (706)
T ss_dssp CCCEEEEEEEETTTTE-----EEECCCCSCTTCE-EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred CCCeeEEEEEECCCCc-----eEeeccCCCCcee-EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc
Confidence 44679999998876 222222 23333 48999999999999877665 89999998862111111111
Q ss_pred cc-cc--eeEEEEEE--cCcEEEEecCCCeEEEEecC-CCcceEEeccccCCCcCeEE-EEeecCCCCCCeEEEE-ccCC
Q 018591 257 KA-HE--MAVLCVCL--VGEFLCSGSADKSIGIWKRE-AFGKLCRVGAITGHEGPVKC-LQASPNAVGGGFLLYS-GSLD 328 (353)
Q Consensus 257 ~~-~~--~~v~~~~~--~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~l~s-~~~d 328 (353)
.. .. .....+++ +|++++++..|+.+++|+++ +++ .+..+..|...+.. ++|+|+ ++.|+. ++.+
T Consensus 305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---~~~~l~~~~~~v~~~~~~spd----g~~l~~~~~~~ 377 (706)
T 2z3z_A 305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---LIRQVTKGEWEVTNFAGFDPK----GTRLYFESTEA 377 (706)
T ss_dssp CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---EEEECCCSSSCEEEEEEECTT----SSEEEEEESSS
T ss_pred CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC---EEEecCCCCeEEEeeeEEcCC----CCEEEEEecCC
Confidence 10 00 12246777 88999999999999999886 444 44556677777877 799999 766654 4455
Q ss_pred C----eEEEEEcCCCC
Q 018591 329 K----SLRVWWVSKQS 340 (353)
Q Consensus 329 g----~i~iw~~~~~~ 340 (353)
+ .|..|++.+++
T Consensus 378 ~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGK 393 (706)
T ss_dssp CTTCBEEEEEETTCCC
T ss_pred CCceEEEEEEEcCCCC
Confidence 4 67777776654
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=2.5e-21 Score=180.76 Aligned_cols=285 Identities=11% Similarity=0.007 Sum_probs=203.7
Q ss_pred eeeeeCccCceEEEEECC-cEEEEEeCCCcEEEEeCCC-ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcc
Q 018591 9 LAVLSGHVGSVSSLALCG-EFILSASQGKDIIVWQQPD-LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~~-~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~ 84 (353)
...+.+|...+.++.|++ .++++++.|+.+++|.+.. +.....+..|. .+...+|+ ++.|+.+ .++.|.+|++.
T Consensus 196 ~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~ 273 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD 273 (1045)
T ss_dssp EEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred eEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence 455689999999999984 4566778889999998643 44455555554 34445565 7778877 48899999984
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEe-C--CeEEEecCCCcEEEEEcCCceee
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY-N--GLIYSGSWDKTLKVWRVADLKCL 161 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~--~~l~~~~~dg~v~iwd~~~~~~~ 161 (353)
... .. .+.... ......+..|...+.+++|+ | ..+++++ ++.|.+|+...++..
T Consensus 274 ~~~-----l~-~l~~~~----------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~ 330 (1045)
T 1k32_A 274 TEK-----IE-KIEIGD----------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL 330 (1045)
T ss_dssp TCC-----EE-ECCCCC----------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred ceE-----ee-eeccCc----------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence 332 11 111100 00011122466788999999 8 5677766 789999999877654
Q ss_pred eeccccCc-ceEEEEEeCC-eEEEEcCCCcEE-EEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcE
Q 018591 162 ESIKAHDD-AVNGLVASKG-IVYSASADGKIK-AWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV 238 (353)
Q Consensus 162 ~~~~~~~~-~v~~i~~~~~-~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 238 (353)
. +..|.. .+..++|+++ .++.++.++.+. +||+..++ .. .+..+...+ ..++|+|+|++|++++.++.|
T Consensus 331 ~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~-----~~-~l~~~~~~~-~~~~~SpDG~~la~~~~~~~v 402 (1045)
T 1k32_A 331 K-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-----AE-KFEENLGNV-FAMGVDRNGKFAVVANDRFEI 402 (1045)
T ss_dssp E-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-----EE-ECCCCCCSE-EEEEECTTSSEEEEEETTSEE
T ss_pred E-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCC-----ce-EecCCccce-eeeEECCCCCEEEEECCCCeE
Confidence 4 556666 8889999722 677777788888 89988765 22 233554444 899999999999999999999
Q ss_pred EEeeccccccceeeeeeccccceeE--EEEEEcCcEEEEecCC----------CeEEEEecCCCcceEEeccccCCCcCe
Q 018591 239 MGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSAD----------KSIGIWKREAFGKLCRVGAITGHEGPV 306 (353)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~h~~~v 306 (353)
++||+.++. .......|...+ .+++++|++|++++.+ +.|++||+.+++ +..+..|...+
T Consensus 403 ~~~d~~tg~----~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----~~~l~~~~~~~ 474 (1045)
T 1k32_A 403 MTVDLETGK----PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHD 474 (1045)
T ss_dssp EEEETTTCC----EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEECSCSSSBE
T ss_pred EEEECCCCc----eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc----EEEeeCCCccc
Confidence 999998873 333333455444 4555678988887764 499999998764 34566788889
Q ss_pred EEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 307 KCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 307 ~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
.+++|+|+ |++|++++.++...+|+...
T Consensus 475 ~~~~~spd----G~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 475 YAPAFDAD----SKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EEEEECTT----SCEEEEEESCCCCCEECSSS
T ss_pred CCceEcCC----CCEEEEEecccCCcCcchhc
Confidence 99999999 99999999988888887653
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=2.8e-22 Score=180.76 Aligned_cols=281 Identities=9% Similarity=-0.035 Sum_probs=185.5
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCce---eeEEEEEe--CCEEEEecCC---------CcEEEE
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG---SVKAVVTV--GNKVFTAHQD---------SRIRVW 81 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~--~~~l~s~~~d---------g~i~~w 81 (353)
.+.+++|+ |+++++ +.||+|++||+.+++....+.+|.. .|.+++|+ +++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 46788886 776665 7899999999999998888877765 48899998 8889988764 788899
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~ 159 (353)
|+++++. ..+... .+|...+..++|+| +.|+.++. +.|++||+.+++
T Consensus 97 d~~~~~~---~~l~~~---------------------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~ 145 (723)
T 1xfd_A 97 KIPHGDP---QSLDPP---------------------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ 145 (723)
T ss_dssp ESSSCCC---EECCCT---------------------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC
T ss_pred ECCCCce---EeccCC---------------------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc
Confidence 9988762 111111 04555688899999 67777775 799999998887
Q ss_pred eeeeccccCcce------------------EEEEEeCC--eEEEEcCCC-------------------------------
Q 018591 160 CLESIKAHDDAV------------------NGLVASKG--IVYSASADG------------------------------- 188 (353)
Q Consensus 160 ~~~~~~~~~~~v------------------~~i~~~~~--~l~~~~~dg------------------------------- 188 (353)
.......+...+ .+++|+++ .|++++.++
T Consensus 146 ~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 225 (723)
T 1xfd_A 146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN 225 (723)
T ss_dssp CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence 766554433333 78999443 677776543
Q ss_pred ---cEEEEeCCCCCcccccceeeeecc-----CCceeeEEEEcCCCCeEEeecC----CCcEEEeeccccccceeeeeec
Q 018591 189 ---KIKAWGKELGKSHCHSLKGILEGH-----KDVSLNSVVVSDDGKWVYGGGS----DGFVMGWEGNVEIVRWKLACET 256 (353)
Q Consensus 189 ---~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~ 256 (353)
.|++||+.+++ ....+..+ ....+..++|+|||+++++... +..|++||+.++..........
T Consensus 226 ~~~~l~~~d~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 300 (723)
T 1xfd_A 226 PSISLHVIGLNGPT-----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES 300 (723)
T ss_dssp CEEEEEEEESSSSC-----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred CeeEEEEEECCCCc-----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc
Confidence 79999998776 22333332 1334589999999998876543 3579999998874221111110
Q ss_pred cccce---eEEEEEEcCcEEEE--ecCCC------eEEEEecCCCcceEEeccccCCCcCeEE-EEeecCCCCCCeEEEE
Q 018591 257 KAHEM---AVLCVCLVGEFLCS--GSADK------SIGIWKREAFGKLCRVGAITGHEGPVKC-LQASPNAVGGGFLLYS 324 (353)
Q Consensus 257 ~~~~~---~v~~~~~~~~~l~~--~~~dg------~i~iw~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~l~s 324 (353)
..... ....++++|+.|+. +..++ .|++||...+........+..+...+.. ++|+|+ ++.|+.
T Consensus 301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd----g~~l~~ 376 (723)
T 1xfd_A 301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK----GNKIYF 376 (723)
T ss_dssp SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT----TTEEEE
T ss_pred CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC----CCEEEE
Confidence 01000 13466778886664 45667 5667773233320002334433344554 699999 888875
Q ss_pred ccCC---CeEEEEEcCCC
Q 018591 325 GSLD---KSLRVWWVSKQ 339 (353)
Q Consensus 325 ~~~d---g~i~iw~~~~~ 339 (353)
.+.+ +.+++|++...
T Consensus 377 ~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EESSSCTTCCEEEEECSS
T ss_pred EEcCCCCcceEEEEEeCC
Confidence 5544 78999998653
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=8.6e-22 Score=173.05 Aligned_cols=274 Identities=11% Similarity=0.035 Sum_probs=184.8
Q ss_pred CceeeeeeC-ccCceEEEEEC--CcEEEEEeC-CCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecC---CCc
Q 018591 6 HRSLAVLSG-HVGSVSSLALC--GEFILSASQ-GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQ---DSR 77 (353)
Q Consensus 6 ~~~~~~l~~-h~~~v~~~~~~--~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~---dg~ 77 (353)
.+.++.++. +..+|++++|+ |++||+++. ||+++||++.+++..+...++...+..+.|+ ++.+++++. +..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~ 89 (582)
T 3o4h_A 10 SRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQ 89 (582)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCC
T ss_pred HHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcc
Confidence 344444543 36689999985 899999887 9999999997776655444444689999998 434555554 456
Q ss_pred EEEEEccc--CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEE
Q 018591 78 IRVWKVSR--SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 78 i~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd 154 (353)
.++|.++. ..... .+.. .+...+.++++++ ..+++.+.++.+.+||
T Consensus 90 ~~l~~~~~~~~g~~~--~l~~-----------------------------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d 138 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ--RLEA-----------------------------VKPMRILSGVDTGEAVVFTGATEDRVALYA 138 (582)
T ss_dssp EEEEEEETTSTTCCE--ECTT-----------------------------SCSBEEEEEEECSSCEEEEEECSSCEEEEE
T ss_pred eEEEEEeccCCCccc--cccC-----------------------------CCCceeeeeCCCCCeEEEEecCCCCceEEE
Confidence 67777655 22111 1110 1111234455555 4455555555666999
Q ss_pred cCCceeeeeccccCcceEEEEE--eCCeEEEEcCC----CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591 155 VADLKCLESIKAHDDAVNGLVA--SKGIVYSASAD----GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
+.+++.......+. .+++| .+..+++++.+ +.|++||+.+++ . ..+..+.... ..++|+|||+.
T Consensus 139 ~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-----~-~~l~~~~~~~-~~~~~SpDG~~ 208 (582)
T 3o4h_A 139 LDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-----L-RVFDSGEGSF-SSASISPGMKV 208 (582)
T ss_dssp EETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-----C-EEECCSSCEE-EEEEECTTSCE
T ss_pred ccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-----c-eEeecCCCcc-ccceECCCCCE
Confidence 98887665554333 67777 33377777766 789999998876 2 3455665554 99999999999
Q ss_pred EEeecCCC--cEEEeeccccccceeeeeeccccceeE----------EEEEEcCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591 229 VYGGGSDG--FVMGWEGNVEIVRWKLACETKAHEMAV----------LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 229 l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v----------~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
|+++..++ .|++||+.++... .+..+...+ .+++++|.++++++.++.+++|++ ++ ..
T Consensus 209 l~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~---~~ 278 (582)
T 3o4h_A 209 TAGLETAREARLVTVDPRDGSVE-----DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE---RV 278 (582)
T ss_dssp EEEEECSSCEEEEEECTTTCCEE-----ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE---EE
T ss_pred EEEccCCCeeEEEEEcCCCCcEE-----EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC---ee
Confidence 99888888 8999999887432 223332222 226778988999999999999999 44 22
Q ss_pred ccccCCCcCeEEEEeecCCCCCCeEEEEccCCC---eEEEEEcCC
Q 018591 297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK---SLRVWWVSK 338 (353)
Q Consensus 297 ~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~ 338 (353)
. .+.+.+.+++|+ + ++++++++.+. .+.+|+...
T Consensus 279 ~---~~~~~v~~~~~s-d----g~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 279 E---APQGNHGRVVLW-R----GKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp C---CCSSEEEEEEEE-T----TEEEEEEEETTEEEEEEEETTCC
T ss_pred c---cCCCceEEEEec-C----CEEEEEEcCCCCCCeEEEEcCCC
Confidence 2 234678999999 8 89999888774 466666543
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.8e-20 Score=157.82 Aligned_cols=203 Identities=11% Similarity=0.036 Sum_probs=143.0
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc----------eeeEE-----eccCceeeEEEEEe--CCEEE----Ee
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDL----------RMFTK-----FGHGDGSVKAVVTV--GNKVF----TA 72 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~----------~~~~~-----~~~~~~~v~~~~~~--~~~l~----s~ 72 (353)
...++.++++ +.++++++.|+ +++|+.... ..+.. ...+...|.+++|+ +++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 3468888885 78999999888 899874311 01111 11245679999998 78888 88
Q ss_pred cCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCc
Q 018591 73 HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKT 149 (353)
Q Consensus 73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~ 149 (353)
+.|+.|++||+++........... ......+.+|...|.+++|+| .+|++++.||.
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~---------------------~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRP---------------------FAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCC---------------------SEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred CCCceEEEEEccccccCCcCCcce---------------------eeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 999999999997641000000000 001122337999999999998 58999999999
Q ss_pred EEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC------CceeeEEE
Q 018591 150 LKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK------DVSLNSVV 221 (353)
Q Consensus 150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~ 221 (353)
|++||++++..+....+|...|.+++|++ .+|++|+.||.|++||.+ ++ ....+..+. ...+.+++
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-----~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-----EKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-----EEEEECCCTTCCTTSCEEEEEEE
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-----ccccccCCcccCCCCceeEEEEE
Confidence 99999999877766777899999999943 399999999999999998 33 222222221 12458999
Q ss_pred EcCCCCeEEe-ecCCC------cEEEeecccc
Q 018591 222 VSDDGKWVYG-GGSDG------FVMGWEGNVE 246 (353)
Q Consensus 222 ~~~~~~~l~~-~~~dg------~i~i~d~~~~ 246 (353)
|++++.++++ ...+| .+++|++...
T Consensus 248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9998877754 33343 3889999865
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.1e-19 Score=148.30 Aligned_cols=250 Identities=9% Similarity=0.085 Sum_probs=166.7
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeC-CCcEEEEeCCCcee-eEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQ-GKDIIVWQQPDLRM-FTKFGHGDGSVKAVVTV--GNKVFTAHQDS 76 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~-dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 76 (353)
..+++.+..+..+...+ +++|+ ++++++++. ++.|.+||+.+++. ...+..+..+..+++++ +++++++..++
T Consensus 27 ~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 105 (331)
T 3u4y_A 27 TDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLN 105 (331)
T ss_dssp TTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSS
T ss_pred CcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCC
Confidence 46778888888777777 99996 776666555 89999999999988 77777776666658887 77888655553
Q ss_pred ---cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCc-
Q 018591 77 ---RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKT- 149 (353)
Q Consensus 77 ---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~- 149 (353)
.|.+||+++++ .+..+ .......+++|+| ++++ +...++.
T Consensus 106 ~~~~i~v~d~~~~~-----~~~~~----------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~ 152 (331)
T 3u4y_A 106 HPFNMQSYSFLKNK-----FISTI----------------------------PIPYDAVGIAISPNGNGLILIDRSSANT 152 (331)
T ss_dssp SSCEEEEEETTTTE-----EEEEE----------------------------ECCTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred CcccEEEEECCCCC-----eEEEE----------------------------ECCCCccceEECCCCCEEEEEecCCCce
Confidence 89999998765 22211 2334557999999 4454 4455688
Q ss_pred EEEEEcCCceee----eeccccCcceEEEEEeC-C--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEE
Q 018591 150 LKVWRVADLKCL----ESIKAHDDAVNGLVASK-G--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV 222 (353)
Q Consensus 150 v~iwd~~~~~~~----~~~~~~~~~v~~i~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (353)
|.+|++.....+ ............++|++ + .++++..++.|.+||+.+++. ......+... ..+ ..++|
T Consensus 153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~--~~~~~~~~~~-~~~-~~~~~ 228 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN--ITLLNAVGTN-NLP-GTIVV 228 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS--CEEEEEEECS-SCC-CCEEE
T ss_pred EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc--cceeeeccCC-CCC-ceEEE
Confidence 999998753322 11113345678899943 3 345556789999999988761 0004444433 333 88999
Q ss_pred cCCCCeEEeec-CCCcEEEeeccccccce--eeeeecc--ccce---eEEEEEEcCcEEEE-ecCCCeEEEEecCCC
Q 018591 223 SDDGKWVYGGG-SDGFVMGWEGNVEIVRW--KLACETK--AHEM---AVLCVCLVGEFLCS-GSADKSIGIWKREAF 290 (353)
Q Consensus 223 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~--~~~~~~~--~~~~---~v~~~~~~~~~l~~-~~~dg~i~iw~~~~~ 290 (353)
+|++++++++. .++.|.+||..+++... ....... .... ...++++++++|++ +..++.|.+||+...
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 99999776554 57889999998874311 1111110 1111 12577778887755 555779999999864
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.7e-19 Score=147.84 Aligned_cols=268 Identities=10% Similarity=0.150 Sum_probs=168.5
Q ss_pred CccCceEEEEEC--CcEEEEEeCC-CcEEEEeCC--Cce--eeEEeccCceeeEEEEEe--CCEEEEec-CCCcEEEEEc
Q 018591 14 GHVGSVSSLALC--GEFILSASQG-KDIIVWQQP--DLR--MFTKFGHGDGSVKAVVTV--GNKVFTAH-QDSRIRVWKV 83 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~d-g~v~vwd~~--~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~~w~~ 83 (353)
.|...+.+++|+ +++|++++.+ +.|++|++. +++ .+..+..+. .+..++|+ ++++++++ .++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 477789999996 8888888876 999999987 444 344555444 77888887 66676555 5889999999
Q ss_pred ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCC-ce
Q 018591 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVAD-LK 159 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~-~~ 159 (353)
+.+. .......+ .....+.+++|+| +.+++++ .++.|.+||+.+ ++
T Consensus 114 ~~~~--~~~~~~~~----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 114 EDGL--PVGVVDVV----------------------------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp ETTE--EEEEEEEE----------------------------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCCc--cccccccc----------------------------cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 6222 11111111 2233577889998 5666666 899999999987 54
Q ss_pred eee----eccc-cCcceEEEEEeC-C-eE-EEEcCCCcEEEEeCCC--CCcccccceeeeecc-C-CceeeEEEEcCCCC
Q 018591 160 CLE----SIKA-HDDAVNGLVASK-G-IV-YSASADGKIKAWGKEL--GKSHCHSLKGILEGH-K-DVSLNSVVVSDDGK 227 (353)
Q Consensus 160 ~~~----~~~~-~~~~v~~i~~~~-~-~l-~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~ 227 (353)
... .+.. ....+.+++|++ + .+ +++..++.|.+||+.. ++.........+... . ...+..++|+|+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 432 2222 245778899943 3 45 4555889999999964 321101111111111 1 11236899999998
Q ss_pred eEE-eecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEEcCcEEEEec-CCCeEEEEecC--CCcceEEeccccCC
Q 018591 228 WVY-GGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCLVGEFLCSGS-ADKSIGIWKRE--AFGKLCRVGAITGH 302 (353)
Q Consensus 228 ~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~~~~~~h 302 (353)
+++ +...++.|.+||+.......+.......+. ....++++++++|++++ .++.|.+|+++ +++ ...+..+..
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~-~~~~~~~~~- 321 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL-LHEKGRYAV- 321 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE-EEEEEEEEC-
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce-eeEcccccc-
Confidence 877 555789999999983211223333332222 22345555688777777 68999999654 432 334444443
Q ss_pred CcCeEEEEeecC
Q 018591 303 EGPVKCLQASPN 314 (353)
Q Consensus 303 ~~~v~~~~~~~~ 314 (353)
.....+++|.|+
T Consensus 322 g~~p~~i~~~~~ 333 (343)
T 1ri6_A 322 GQGPMWVVVNAH 333 (343)
T ss_dssp SSSCCEEEEEEE
T ss_pred CCCCeeEEEEcc
Confidence 245678888886
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=3.5e-20 Score=155.98 Aligned_cols=223 Identities=14% Similarity=0.122 Sum_probs=148.3
Q ss_pred CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccccee
Q 018591 36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY 113 (353)
Q Consensus 36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
+.+++|+... . + +...+..++++ +.++++++.++ +++|+....... ...........
T Consensus 23 ~~vri~~~~~-~----~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~-----~~~~~~~~~~~-------- 81 (434)
T 2oit_A 23 KKVRIFDSPE-E----L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ-----NKPGDDPNKIV-------- 81 (434)
T ss_dssp CEEECSCCCS-S----C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC-----CCTTCCTTCEE--------
T ss_pred eeEEecCCcc-c----c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh-----cccccCccccc--------
Confidence 5788887532 1 1 23346667776 78899998887 999987542100 00000000000
Q ss_pred EeecccceeeeeecCCceEEEEEeC--CeEE----EecCCCcEEEEEcCCc--------e---eeeeccccCcceEEEEE
Q 018591 114 VQTRRHHKRLWIEHADSISCLTVYN--GLIY----SGSWDKTLKVWRVADL--------K---CLESIKAHDDAVNGLVA 176 (353)
Q Consensus 114 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~----~~~~dg~v~iwd~~~~--------~---~~~~~~~~~~~v~~i~~ 176 (353)
. ........+...|.+++|++ ++|+ +|+.|+.|++||++++ + .+..+.+|...|.+++|
T Consensus 82 -~---~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 157 (434)
T 2oit_A 82 -D---KVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKW 157 (434)
T ss_dssp -E---CCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEE
T ss_pred -c---cCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEE
Confidence 0 00001124677899999999 7788 7899999999998765 1 24566779999999999
Q ss_pred eC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeee
Q 018591 177 SK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLA 253 (353)
Q Consensus 177 ~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 253 (353)
++ ..+++++.||+|++||++++. .......|...+ .+++|+|+|++|++|+.||.|++||.+ +.......
T Consensus 158 ~p~~~~~las~s~Dg~v~iwD~~~~~-----~~~~~~~~~~~v-~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 158 NPTVPSMVAVCLADGSIAVLQVTETV-----KVCATLPSTVAV-TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp CSSCTTEEEEEETTSCEEEEEESSSE-----EEEEEECGGGCE-EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred CCCCCCEEEEEECCCeEEEEEcCCCc-----ceeeccCCCCce-eEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 43 489999999999999999875 334445565555 999999999999999999999999998 32111111
Q ss_pred eecc---ccceeEEEEEEc--CcEEEE-ecCCC------eEEEEecCCC
Q 018591 254 CETK---AHEMAVLCVCLV--GEFLCS-GSADK------SIGIWKREAF 290 (353)
Q Consensus 254 ~~~~---~~~~~v~~~~~~--~~~l~~-~~~dg------~i~iw~~~~~ 290 (353)
.... .|...+.++.|+ +.++++ ...+| .+++|++...
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 1111 234578888886 344433 33443 3899999864
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=3.5e-20 Score=152.33 Aligned_cols=266 Identities=12% Similarity=0.035 Sum_probs=171.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCc-eeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGD-GSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK 101 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 101 (353)
+.++++++.++.|++||..+++.+..+..+. ..+..++++ ++++ ++...++.|.+||+.+++. ...+....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-----~~~~~~~~ 85 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-----TFHANLSS 85 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----EEEEESCC
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-----EEEEEccc
Confidence 7789999999999999999999988886543 246778887 5555 4566789999999987652 11111000
Q ss_pred ceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC------------CcEEEEEcCCceee---eec
Q 018591 102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD------------KTLKVWRVADLKCL---ESI 164 (353)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d------------g~v~iwd~~~~~~~---~~~ 164 (353)
. . ......+..++|+| +++++++.+ +.|.+||+.+++.. ..+
T Consensus 86 ~-----------------~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 144 (349)
T 1jmx_B 86 V-----------------P----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 144 (349)
T ss_dssp S-----------------T----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred c-----------------c----ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence 0 0 00022356788988 678887755 89999999885433 333
Q ss_pred cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC--------------------c---eeeEE
Q 018591 165 KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD--------------------V---SLNSV 220 (353)
Q Consensus 165 ~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--------------------~---~v~~~ 220 (353)
. +...+.++++ +++.+++++ +.|.+||..+++ ....+..... . ....+
T Consensus 145 ~-~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 145 P-MPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGK-----YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp E-CCSSCCCEEECTTSCEEEES--SSEEEECTTTCC-----EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred c-CCCcccceeECCCCcEEEcc--CcEEEEeCCCCc-----eeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 3 3446888889 444555554 349999998876 3333322210 0 12456
Q ss_pred EEcCCCC-----------eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE-cCcEEEEecCCCeEEEEecC
Q 018591 221 VVSDDGK-----------WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL-VGEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 221 ~~~~~~~-----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iw~~~ 288 (353)
++++++. ++.....++.+.+|++.. ........++++ ++++++++ ++.|++||+.
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~ 283 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-----------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLK 283 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-----------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETT
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEeccccc-----------CCCcceeeEecCCCCCEEEEE--cCeEEEEECc
Confidence 6665542 112333344455554421 122233456677 88888888 8899999999
Q ss_pred CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 289 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
+++. +..+. ....+.+++|+|+ +++|++++.++.|++||+++++.+...+
T Consensus 284 ~~~~---~~~~~-~~~~~~~~~~s~d----g~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 284 QRKL---IKAAN-LDHTYYCVAFDKK----GDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TTEE---EEEEE-CSSCCCEEEECSS----SSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred cCeE---EEEEc-CCCCccceEECCC----CCEEEEecCCCeEEEEeccccceeeeee
Confidence 8763 33333 2345789999999 8888888889999999999887766543
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=3.6e-20 Score=167.03 Aligned_cols=286 Identities=8% Similarity=-0.014 Sum_probs=180.3
Q ss_pred CCCCceeeeeeCccC---ceEEEEEC--CcEEEEEeCC---------CcEEEEeCCCceeeEEec---cCceeeEEEEEe
Q 018591 3 CKSHRSLAVLSGHVG---SVSSLALC--GEFILSASQG---------KDIIVWQQPDLRMFTKFG---HGDGSVKAVVTV 65 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~---~v~~~~~~--~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~ 65 (353)
..+++....+.+|.. .|.+++|+ |++|++++.+ +.+++||+.+++. ..+. .|...+..++|+
T Consensus 44 ~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~S 122 (723)
T 1xfd_A 44 VETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWG 122 (723)
T ss_dssp GGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBC
T ss_pred CCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEEC
Confidence 456677777877775 49999996 8899999875 7888999998876 3333 344457888887
Q ss_pred --CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC---------CceEEE
Q 018591 66 --GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA---------DSISCL 134 (353)
Q Consensus 66 --~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~ 134 (353)
|+.|+.++. +.|++||+.++...... ..... ..++.++. ..+.++
T Consensus 123 PdG~~la~~~~-~~i~~~~~~~g~~~~~~---~~~~~--------------------~~~~~g~~~~v~~ee~~~~~~~~ 178 (723)
T 1xfd_A 123 PKGQQLIFIFE-NNIYYCAHVGKQAIRVV---STGKE--------------------GVIYNGLSDWLYEEEILKTHIAH 178 (723)
T ss_dssp SSTTCEEEEET-TEEEEESSSSSCCEEEE---CCCBT--------------------TTEEEEECCHHHHHTTSSSSEEE
T ss_pred CCCCEEEEEEC-CeEEEEECCCCceEEEe---cCCCC--------------------CceECcccceeEEEEeccCcceE
Confidence 788888876 79999999876532111 00000 00001111 133678
Q ss_pred EEeC--CeEEEecCCC----------------------------------cEEEEEcCCceeeeecccc------CcceE
Q 018591 135 TVYN--GLIYSGSWDK----------------------------------TLKVWRVADLKCLESIKAH------DDAVN 172 (353)
Q Consensus 135 ~~~~--~~l~~~~~dg----------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~ 172 (353)
.|+| +.|++++.|+ .|++||+.+++....+..+ ...+.
T Consensus 179 ~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~ 258 (723)
T 1xfd_A 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT 258 (723)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred EECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeE
Confidence 8888 5677665442 7999999888765555543 56789
Q ss_pred EEEEeC-C-eEEEEcC----CCcEEEEeCCCCCcccccceeeeeccCCcee----eEEEEcCCCCeEEe--ecCCC----
Q 018591 173 GLVASK-G-IVYSASA----DGKIKAWGKELGKSHCHSLKGILEGHKDVSL----NSVVVSDDGKWVYG--GGSDG---- 236 (353)
Q Consensus 173 ~i~~~~-~-~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~dg---- 236 (353)
.++|++ + .+++.+. +..|++||+.+++ ....+..+....+ ..++|+|||+.|+. +..++
T Consensus 259 ~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-----CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp EEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-----EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred EEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-----ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 999944 4 4444432 3579999998886 3333333222111 37899999997775 45666
Q ss_pred --cEEEee-ccccccceeeeeeccc-cce--eEEEEEEcCcEEEEecCC---CeEEEEecCCCcceEEeccccC---CCc
Q 018591 237 --FVMGWE-GNVEIVRWKLACETKA-HEM--AVLCVCLVGEFLCSGSAD---KSIGIWKREAFGKLCRVGAITG---HEG 304 (353)
Q Consensus 237 --~i~i~d-~~~~~~~~~~~~~~~~-~~~--~v~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~---h~~ 304 (353)
.|.+|| ...+.. .....+.. +.. .+.+++++++.|+..+.+ +.+++|++...... ....+.. |..
T Consensus 334 ~~~l~~~d~~~~~~~--~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~ 410 (723)
T 1xfd_A 334 FYHITVSSSQPNSSN--DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-NRQCLSCDLVENC 410 (723)
T ss_dssp EEEEEEECSSCCSSS--CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC-CCBCSSTTSSSSC
T ss_pred eeEEEEEeccCCCCc--cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC-CcceecccccCCC
Confidence 466677 333310 00112222 221 234677788888765544 78999998754311 1222332 677
Q ss_pred CeEEEEeecCCCCCCeEEEEc
Q 018591 305 PVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 305 ~v~~~~~~~~~~~~~~~l~s~ 325 (353)
.+..++|+|+ +++|+..
T Consensus 411 ~~~~~~~spd----g~~l~~~ 427 (723)
T 1xfd_A 411 TYFSASFSHS----MDFFLLK 427 (723)
T ss_dssp CCCEEEECTT----SSEEEEE
T ss_pred CeEEEEECCC----CCEEEEE
Confidence 7999999999 7777654
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=4.3e-20 Score=148.07 Aligned_cols=219 Identities=14% Similarity=0.019 Sum_probs=154.8
Q ss_pred EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC
Q 018591 71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK 148 (353)
Q Consensus 71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg 148 (353)
.++.|+.|++||+.+++. ..+..|...+.+++|+| +++++++ ++
T Consensus 17 ~~~~~~~i~~~d~~~~~~---------------------------------~~~~~~~~~v~~~~~spdg~~l~~~~-~~ 62 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM---------------------------------RVVWQTPELFEAPNWSPDGKYLLLNS-EG 62 (297)
T ss_dssp -CCCCEEEEEEETTTTEE---------------------------------EEEEEESSCCEEEEECTTSSEEEEEE-TT
T ss_pred CCCcceeEEEEeCCCCce---------------------------------eeeccCCcceEeeEECCCCCEEEEEc-CC
Confidence 356789999999987651 12226788999999999 6677765 78
Q ss_pred cEEEEEcCC-ceeeeecccc-CcceEEEEEeCC--eEEEEc--CCCcEEEEeC--CCCCcccccceeeeeccCCceeeEE
Q 018591 149 TLKVWRVAD-LKCLESIKAH-DDAVNGLVASKG--IVYSAS--ADGKIKAWGK--ELGKSHCHSLKGILEGHKDVSLNSV 220 (353)
Q Consensus 149 ~v~iwd~~~-~~~~~~~~~~-~~~v~~i~~~~~--~l~~~~--~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (353)
.|++||+.+ ++.......+ ...+.+++|+++ .+++++ .++...+|.+ .++. ...+..+.. +..+
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~--~~~~ 134 (297)
T 2ojh_A 63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT------PRLMTKNLP--SYWH 134 (297)
T ss_dssp EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC------CEECCSSSS--EEEE
T ss_pred eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc------eEEeecCCC--ccce
Confidence 999999998 8777766555 467889999433 777777 3345555544 4443 223333332 4889
Q ss_pred EEcCCCCeEE-eecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEec-CCCeEEEEecC-CCcceEE
Q 018591 221 VVSDDGKWVY-GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGS-ADKSIGIWKRE-AFGKLCR 295 (353)
Q Consensus 221 ~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~dg~i~iw~~~-~~~~~~~ 295 (353)
+|+|++++++ ++..++.+++|++..... ....+..+...+.++.+ ++++|+.++ .++.+++|++. .+. .
T Consensus 135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---~ 208 (297)
T 2ojh_A 135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---S 208 (297)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---C
T ss_pred EECCCCCEEEEEECCCCceEEEEEECCCC---cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---C
Confidence 9999999877 777899999998654321 12233444555566555 577777655 58999999986 333 3
Q ss_pred eccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----------CeEEEEEcCCCCC
Q 018591 296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----------KSLRVWWVSKQSS 341 (353)
Q Consensus 296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----------g~i~iw~~~~~~~ 341 (353)
+..+..|...+.+++|+|+ +++|++++.+ +.|.+||+.+++.
T Consensus 209 ~~~~~~~~~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 209 VERITDSAYGDWFPHPSPS----GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEECCCCSEEEEEEEECTT----SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred cEEEecCCcccCCeEECCC----CCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 4456677888999999999 9999888776 5799999988765
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2e-18 Score=142.49 Aligned_cols=281 Identities=12% Similarity=0.152 Sum_probs=170.3
Q ss_pred cEEEEEe----CCCcEEEEeC--CCceeeEEeccCceeeEEEEEe--CCEEEEecCC----CcEEEEEcccCccceeEEe
Q 018591 27 EFILSAS----QGKDIIVWQQ--PDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD----SRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 27 ~~l~s~~----~dg~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d----g~i~~w~~~~~~~~~~~~~ 94 (353)
.+++.|+ .++.|.+|++ .+++.......+......++|+ +++|++++.+ +.|.+|+++..... ...+
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~-~~~~ 92 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT-LHLL 92 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE-EEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc-EEEe
Confidence 3555564 4578999975 4565443322255667778887 7788888875 79999998764211 1111
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec-CCCcEEEEEcCCceeeeec------c--
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS-WDKTLKVWRVADLKCLESI------K-- 165 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~------~-- 165 (353)
...+ .+......+++..+.+++++ .++.|.+|++.....+..+ .
T Consensus 93 ~~~~---------------------------~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 93 NTQK---------------------------TMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp EEEE---------------------------CSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred eEec---------------------------cCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 1111 23445666777446555554 6889999999754332221 1
Q ss_pred ------ccCcceEEEEEeC-C-eEE-EEcCCCcEEEEeCCCCCc----c-cccc---eeeeeccCCceeeEEEEcCCCCe
Q 018591 166 ------AHDDAVNGLVASK-G-IVY-SASADGKIKAWGKELGKS----H-CHSL---KGILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 166 ------~~~~~v~~i~~~~-~-~l~-~~~~dg~i~iwd~~~~~~----~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
.+...+.+++|++ + .++ +...++.|.+|++..... . .... ..........+ ..++|+|++++
T Consensus 146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~spdg~~ 224 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGP-RHLIFNSDGKF 224 (361)
T ss_dssp CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCE-EEEEECTTSSE
T ss_pred CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCC-eEEEEcCCCCE
Confidence 1123457889943 3 454 445588999999875541 0 0000 11112223334 89999999998
Q ss_pred EEeec-CCCcEEEeeccccccceee-eeeccccce--eEEEEEEcCcEEEEecC--CCeEEEEecCC-CcceEEeccccC
Q 018591 229 VYGGG-SDGFVMGWEGNVEIVRWKL-ACETKAHEM--AVLCVCLVGEFLCSGSA--DKSIGIWKREA-FGKLCRVGAITG 301 (353)
Q Consensus 229 l~~~~-~dg~i~i~d~~~~~~~~~~-~~~~~~~~~--~v~~~~~~~~~l~~~~~--dg~i~iw~~~~-~~~~~~~~~~~~ 301 (353)
+++++ .++.|.+|++.++...... ......+.. .-.+++++|++|+++.. ++.|.+|++.. ......+..+..
T Consensus 225 l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~ 304 (361)
T 3scy_A 225 AYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT 304 (361)
T ss_dssp EEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred EEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC
Confidence 87766 6899999999865321111 111122112 23455667888866655 48999999962 223334444444
Q ss_pred CCcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEcC--CCCC
Q 018591 302 HEGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWVS--KQSS 341 (353)
Q Consensus 302 h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~--~~~~ 341 (353)
...+.+++|+|+ +++|++++ .++.|.+|++. +++.
T Consensus 305 -g~~~~~~~~spd----g~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 305 -GIHPRNFIITPN----GKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp -SSCCCEEEECTT----SCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred -CCCCceEEECCC----CCEEEEEECCCCCEEEEEEECCCCcE
Confidence 457889999999 88888776 67899997654 4543
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=3.1e-19 Score=148.87 Aligned_cols=289 Identities=8% Similarity=-0.027 Sum_probs=185.4
Q ss_pred CCCCceeeeeeCccCceEE-----EEEC--CcEEEEEeC-CC--cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE
Q 018591 3 CKSHRSLAVLSGHVGSVSS-----LALC--GEFILSASQ-GK--DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF 70 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~-----~~~~--~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 70 (353)
..++..+..+..|...... .+|+ |++|+.++. +| .|.+||+.+++......++...+..+.|+ ++.|+
T Consensus 17 ~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 17 ASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALF 96 (388)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEE
T ss_pred CCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEE
Confidence 3567788889888877766 7785 888888887 66 48889999998887777776666556676 88999
Q ss_pred EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE--EeC--CeEE----
Q 018591 71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT--VYN--GLIY---- 142 (353)
Q Consensus 71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~--~~l~---- 142 (353)
.++.++.|++||+.+++.... .. .+...+.... +++ ..++
T Consensus 97 ~~~~~~~l~~~d~~~g~~~~~---~~-----------------------------~~~~~~~~~~~~~~~dg~~l~~~~~ 144 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLEENVV---YQ-----------------------------VPAEWVGYGTWVANSDCTKLVGIEI 144 (388)
T ss_dssp EEETTTEEEEEETTTCCEEEE---EE-----------------------------CCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred EEeCCCeEEEEECCCCcceee---ee-----------------------------chhhcccccceeECCCCCeeccccc
Confidence 999999999999988763211 11 1122221121 233 2222
Q ss_pred ------------------EecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC-C--eEEEEcC------CCcEEEEeC
Q 018591 143 ------------------SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G--IVYSASA------DGKIKAWGK 195 (353)
Q Consensus 143 ------------------~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~--~l~~~~~------dg~i~iwd~ 195 (353)
....+..|.+||+.+++.... ..+...+..+.|++ + .++.... ...|.++|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred cCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 123457899999988865443 35567788999966 4 5555544 337888887
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC----cEEEeeccccccceeeeeecccccee-----EEE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG----FVMGWEGNVEIVRWKLACETKAHEMA-----VLC 265 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~-----v~~ 265 (353)
.... ............+...+|+|||+.|+..+. ++ .|++||+.+++.. .......+... -..
T Consensus 224 ~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 224 DGTN-----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR--QLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp TSCC-----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE--EEEEECCEEEEEECTTSSE
T ss_pred CCCc-----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE--EEEcCCCceeeeecCCCCe
Confidence 7654 222222222233478899999997765432 22 3999999887422 22222221111 125
Q ss_pred EEEcCcEEEEe---------cCCCeEEEEecCCCcceEEeccccCCCc-----------CeEEEEeecCCCCCCeEEEEc
Q 018591 266 VCLVGEFLCSG---------SADKSIGIWKREAFGKLCRVGAITGHEG-----------PVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 266 ~~~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~~l~s~ 325 (353)
++++|+.|+.. ..+..|++||+.+++. ..+..|.. .+.+++|+|| |+.|+..
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~spD----g~~l~~~ 368 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ----HRVARHDTSWKVFEGDRQVTHPHPSFTPD----DKQILFT 368 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTTEE----EEEEECCCCCCCBTTBSSTTCCCCEECTT----SSEEEEE
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCCce----EEeccccCcccccccccccCCCCccCCCC----CCEEEEE
Confidence 78888877643 4567899999988642 23334444 5788999999 8766655
Q ss_pred c-CCCeEEEEEcCCC
Q 018591 326 S-LDKSLRVWWVSKQ 339 (353)
Q Consensus 326 ~-~dg~i~iw~~~~~ 339 (353)
+ .+|...+|.+.-.
T Consensus 369 s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 369 SDVHGKPALYLATLP 383 (388)
T ss_dssp ECTTSSCEEEEEECC
T ss_pred ecCCCceeEEEEECC
Confidence 4 5787778866543
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=4.2e-19 Score=146.14 Aligned_cols=241 Identities=11% Similarity=0.063 Sum_probs=166.3
Q ss_pred eeeEEEEEe--CCEEEEecC-------CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591 57 GSVKAVVTV--GNKVFTAHQ-------DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127 (353)
Q Consensus 57 ~~v~~~~~~--~~~l~s~~~-------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
..+..++++ ++++++++. ++.|.+||..+++ ....+ ..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-----~~~~~----------------------------~~ 87 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-----VTQAI----------------------------HN 87 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-----EEEEE----------------------------EE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-----EEEEE----------------------------ec
Confidence 456778887 677777763 5689999998775 22211 12
Q ss_pred CCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeeccccCc---------ceEEEEEeC--CeEEEEc--CCCcEE
Q 018591 128 ADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAHDD---------AVNGLVASK--GIVYSAS--ADGKIK 191 (353)
Q Consensus 128 ~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~v~~i~~~~--~~l~~~~--~dg~i~ 191 (353)
...+..+.+++ + .+++...++.|.+||..+++.+..+..+.. .+.++++++ +.+++++ .++.|.
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 23456778888 5 455566689999999999988887765432 268888843 3555554 478999
Q ss_pred EEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE--EEEEEc
Q 018591 192 AWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLV 269 (353)
Q Consensus 192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~ 269 (353)
+||..+++ ....+..+...+ ..++|+|+++++++++.++.+.+||..++...........++...+ .+++++
T Consensus 168 ~~d~~~~~-----~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 168 VVDGGNIK-----LKTAIQNTGKMS-TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp EEETTTTE-----EEEEECCCCTTC-CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred EEcCCCCc-----eEEEecCCCCcc-ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence 99999886 455555344444 8899999999999999999999999988743332222112233334 455666
Q ss_pred CcEEEEec-CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeE-EEEccCCCeEEEEEcCCCCCcccc
Q 018591 270 GEFLCSGS-ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL-LYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 270 ~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
++++++++ .++.|.+||..+++.... +.... ...++|+|+ +++ +++...++.|.+||+.+++.+...
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~~~~~~~---~~~~~--~~~~~~s~d----g~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRNGNILAK---VAAPE--SLAVLFNPA----RNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEE---EECSS--CCCEEEETT----TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEE---EEcCC--CceEEECCC----CCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 87666555 459999999998874333 33222 256999999 774 455557999999999988766544
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=4.2e-18 Score=140.62 Aligned_cols=276 Identities=12% Similarity=0.094 Sum_probs=164.8
Q ss_pred ccCceEEEEEC--CcEEEEEeCC----CcEEEEeCCC--cee--eEEeccCceeeEEEEEeCCEEEEec-CCCcEEEEEc
Q 018591 15 HVGSVSSLALC--GEFILSASQG----KDIIVWQQPD--LRM--FTKFGHGDGSVKAVVTVGNKVFTAH-QDSRIRVWKV 83 (353)
Q Consensus 15 h~~~v~~~~~~--~~~l~s~~~d----g~v~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~~w~~ 83 (353)
|......++|+ +++|++++.+ +.|.+|++.. ++. +.....+......+++++++|++++ .++.+.+|++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence 66778888996 8889998886 7999998765 443 3344444555666777877777665 6789999999
Q ss_pred ccCccc-eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEE-ecCCCcEEEEEcCCce
Q 018591 84 SRSSEN-VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYS-GSWDKTLKVWRVADLK 159 (353)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~-~~~dg~v~iwd~~~~~ 159 (353)
...... ............ ......+...+.+++|+| +++++ ...++.|.+|++....
T Consensus 128 ~~~g~~~~~~~~~~~~g~~-------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSG-------------------PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp CTTSCBCSCSEEEECCCCC-------------------SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC
T ss_pred CCCCcCcccceeEEccCCC-------------------CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC
Confidence 754310 000000000000 000002344578899999 54544 4558899999987533
Q ss_pred e------e-------eeccccCcceEEEEEeCC--eEEEEc-CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc
Q 018591 160 C------L-------ESIKAHDDAVNGLVASKG--IVYSAS-ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS 223 (353)
Q Consensus 160 ~------~-------~~~~~~~~~v~~i~~~~~--~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (353)
. + .....+...+..++|+++ .+++++ .++.|.+||+.++.............+...+ ..++|+
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~-~~i~~s 267 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS-GDIHLS 267 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE-EEEEEC
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc-ccEEEC
Confidence 1 1 111233456788999443 565555 6899999999866421111111122222334 799999
Q ss_pred CCCCeEEeecC--CCcEEEeeccccccceeeeeecc-ccceeEEEEEEcCcEEEEec-CCCeEEEEecC--CCcceEEec
Q 018591 224 DDGKWVYGGGS--DGFVMGWEGNVEIVRWKLACETK-AHEMAVLCVCLVGEFLCSGS-ADKSIGIWKRE--AFGKLCRVG 297 (353)
Q Consensus 224 ~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~~ 297 (353)
|+|++|+++.. ++.|.+|++.............. +....-.+++++|++|++++ .++.|.+|+++ +++. ..+.
T Consensus 268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~-~~~~ 346 (361)
T 3scy_A 268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL-TDIK 346 (361)
T ss_dssp TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE-EECS
T ss_pred CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE-eecc
Confidence 99998876665 48999999963211222222222 22223455666788887776 67999997554 4442 1111
Q ss_pred cccCCCcCeEEEEee
Q 018591 298 AITGHEGPVKCLQAS 312 (353)
Q Consensus 298 ~~~~h~~~v~~~~~~ 312 (353)
-..+...+.|+.|.
T Consensus 347 -~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 347 -KDIKVDKPVCLKFV 360 (361)
T ss_dssp -CCEECSSEEEEEEE
T ss_pred -eeeeCCCCeEEEEc
Confidence 12244568888886
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=1.1e-18 Score=142.53 Aligned_cols=242 Identities=12% Similarity=0.103 Sum_probs=163.4
Q ss_pred CCCCceeeeeeCcc-C-ceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccC-----ceeeEEEEEe--CCEEE
Q 018591 3 CKSHRSLAVLSGHV-G-SVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHG-----DGSVKAVVTV--GNKVF 70 (353)
Q Consensus 3 ~~~~~~~~~l~~h~-~-~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~-----~~~v~~~~~~--~~~l~ 70 (353)
..+++.+..+.... . .+.+++|+ ++++ ++++.++.|.+||+.+++.+..+... ...+..++++ +++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 97 (337)
T 1pby_B 18 TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred CCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEE
Confidence 45677777776332 2 48889996 6554 56667899999999999988776532 2356778887 67888
Q ss_pred Eec------------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591 71 TAH------------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN 138 (353)
Q Consensus 71 s~~------------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 138 (353)
+++ .++.|.+||+.+++ ....+ .....+.++.|+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~~~~----------------------------~~~~~~~~~~~s~ 144 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYDAETLS-----RRKAF----------------------------EAPRQITMLAWAR 144 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTE-----EEEEE----------------------------ECCSSCCCEEECT
T ss_pred EEecccccccccccccCceEEEEECCCCc-----EEEEE----------------------------eCCCCcceeEECC
Confidence 875 57999999997764 11111 1223466788988
Q ss_pred --CeEEEecCCCcEEEEEcCCceeeeeccccC--cceEEEEEeC--CeEEEEc-CCC-----------------------
Q 018591 139 --GLIYSGSWDKTLKVWRVADLKCLESIKAHD--DAVNGLVASK--GIVYSAS-ADG----------------------- 188 (353)
Q Consensus 139 --~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~i~~~~--~~l~~~~-~dg----------------------- 188 (353)
+.++++ ++.|.+||+.+++.+..+..+. .++ .+++ ..++..+ .++
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT 219 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence 567776 6899999999998877665433 222 3322 2232222 222
Q ss_pred cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc-ccceeEEEEE
Q 018591 189 KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK-AHEMAVLCVC 267 (353)
Q Consensus 189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~ 267 (353)
.|.+||+.+++.. ...+..+...+ ..++|+|++++++++ ++.|.+||+.+++.. ..+. .+.....+++
T Consensus 220 ~v~~~d~~~~~~~----~~~~~~~~~~~-~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~s 288 (337)
T 1pby_B 220 GLLTMDLETGEMA----MREVRIMDVFY-FSTAVNPAKTRAFGA--YNVLESFDLEKNASI----KRVPLPHSYYSVNVS 288 (337)
T ss_dssp EEEEEETTTCCEE----EEEEEECSSCE-EEEEECTTSSEEEEE--ESEEEEEETTTTEEE----EEEECSSCCCEEEEC
T ss_pred ceEEEeCCCCCce----EeecCCCCCce-eeEEECCCCCEEEEe--CCeEEEEECCCCcCc----ceecCCCceeeEEEC
Confidence 4789999987621 22233333444 789999999999988 799999999887322 2222 2223344556
Q ss_pred EcCcEEEEecCCCeEEEEecCCCcce
Q 018591 268 LVGEFLCSGSADKSIGIWKREAFGKL 293 (353)
Q Consensus 268 ~~~~~l~~~~~dg~i~iw~~~~~~~~ 293 (353)
+++++|++++.++.|++||+.+++..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 67888888899999999999988743
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=2.4e-17 Score=135.36 Aligned_cols=256 Identities=13% Similarity=0.110 Sum_probs=156.1
Q ss_pred eCccCceEEEEEC--CcEEEEEeC---CCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEec-CCCcEEEEE
Q 018591 13 SGHVGSVSSLALC--GEFILSASQ---GKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAH-QDSRIRVWK 82 (353)
Q Consensus 13 ~~h~~~v~~~~~~--~~~l~s~~~---dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~~w~ 82 (353)
..+...+..++|+ |+ |++++. ++.|++||+.+++ .+..+..+...+..++|+ +++|++++ .++.+.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 4456777889996 67 555544 6899999997766 444444556678888887 77788777 778999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC-Cce
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA-DLK 159 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~-~~~ 159 (353)
++.... ...+..+..... .+. ...+...+.+++|+| +++++...++.|.+||+. +++
T Consensus 115 ~~~~g~--~~~~~~~~~~~~----------------~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 115 IAADGA--LTLTDTVQHSGH----------------GPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp ECTTSC--EEEEEEEECCCC----------------CSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred eCCCCC--eeecceeecCCC----------------CCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 964321 111111110000 000 002344688999998 655666678899999998 444
Q ss_pred ee--eecccc-CcceEEEEEeCC--eE-EEEcCCCcEEEEeCCCCCcccccceeeeeccCC-----ceeeEEEEcCCCCe
Q 018591 160 CL--ESIKAH-DDAVNGLVASKG--IV-YSASADGKIKAWGKELGKSHCHSLKGILEGHKD-----VSLNSVVVSDDGKW 228 (353)
Q Consensus 160 ~~--~~~~~~-~~~v~~i~~~~~--~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~ 228 (353)
.. ..+..+ ...+..++|+++ ++ ++...++.+.+|++....... ........... ..+..++|+|+|++
T Consensus 175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF-TQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-EEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce-EEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 32 222222 336778999443 34 446678999999987522110 11112222111 22488999999998
Q ss_pred EE-eecCCCcEEEeeccccccceeeeeeccccc--eeEEEEEEcCcEEEEecC-CCeEEEEec--CCCc
Q 018591 229 VY-GGGSDGFVMGWEGNVEIVRWKLACETKAHE--MAVLCVCLVGEFLCSGSA-DKSIGIWKR--EAFG 291 (353)
Q Consensus 229 l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~-dg~i~iw~~--~~~~ 291 (353)
|+ +...++.|.+|++.... ..........+. ..-.++++++++|++++. ++.|.+|++ .+++
T Consensus 254 l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADG-HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp EEEEEETTTEEEEEEECGGG-CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEEeCCCCEEEEEEECCCC-cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 74 55568999999997431 223333333322 233455667888877765 589999955 4444
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=5.9e-18 Score=139.81 Aligned_cols=271 Identities=13% Similarity=0.118 Sum_probs=165.1
Q ss_pred EEEEEeCC--CcEEEEeC--CCceeeEE--ec-cCceeeEEEEEe--CCEEEEecCCCcEEEEEcc-cCccceeEEeecc
Q 018591 28 FILSASQG--KDIIVWQQ--PDLRMFTK--FG-HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS-RSSENVFRLVDTL 97 (353)
Q Consensus 28 ~l~s~~~d--g~v~vwd~--~~~~~~~~--~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~-~~~~~~~~~~~~~ 97 (353)
+++.|+.. +.|.+|++ .++++... .. .....+..++++ +++|++++.+ .|.+|+++ +++.. .....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~---~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV---HEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE---EEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE---EeeEe
Confidence 45666653 56888764 56654322 21 233467778887 7788888887 99999997 44311 00000
Q ss_pred ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C--eEEEec-------------CCCcEEEEEcC-Cce
Q 018591 98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G--LIYSGS-------------WDKTLKVWRVA-DLK 159 (353)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~l~~~~-------------~dg~v~iwd~~-~~~ 159 (353)
+ .+ +....++++| + +++++. .+|.+.+|++. +++
T Consensus 80 ~---------------------------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~ 131 (365)
T 1jof_A 80 P---------------------------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK 131 (365)
T ss_dssp E---------------------------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC
T ss_pred e---------------------------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc
Confidence 0 00 1123366666 3 244543 68999999997 455
Q ss_pred eeeecc----ccCcceEEEEEeC-C-eEEEEc-CCCcEEEEeCC-CCCcccccceeeeec--cCCceeeEEEEcCCCCeE
Q 018591 160 CLESIK----AHDDAVNGLVASK-G-IVYSAS-ADGKIKAWGKE-LGKSHCHSLKGILEG--HKDVSLNSVVVSDDGKWV 229 (353)
Q Consensus 160 ~~~~~~----~~~~~v~~i~~~~-~-~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l 229 (353)
....+. .+...+.+++|++ + +++++. .++.|++||+. +++. .....+.. +...+ ..++|+|+|+++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~---~~~~~~~~~~~g~~p-~~~~~spdg~~l 207 (365)
T 1jof_A 132 LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV---ELVGSVDAPDPGDHP-RWVAMHPTGNYL 207 (365)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE---EEEEEEECSSTTCCE-EEEEECTTSSEE
T ss_pred CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE---EEeeeEecCCCCCCC-CEeEECCCCCEE
Confidence 544333 2456789999944 3 566554 46899999998 5541 11122221 23344 899999999998
Q ss_pred EeecC-CCcEEEeeccc--cccce--eeeeecc----ccc--------eeEEE-EEEcCcEEEEecCC-C-----eEEEE
Q 018591 230 YGGGS-DGFVMGWEGNV--EIVRW--KLACETK----AHE--------MAVLC-VCLVGEFLCSGSAD-K-----SIGIW 285 (353)
Q Consensus 230 ~~~~~-dg~i~i~d~~~--~~~~~--~~~~~~~----~~~--------~~v~~-~~~~~~~l~~~~~d-g-----~i~iw 285 (353)
++++. ++.|.+|++.. +.... .....+. ++. ..-.+ ++++|++|+++..+ + .|.+|
T Consensus 208 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~ 287 (365)
T 1jof_A 208 YALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF 287 (365)
T ss_dssp EEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred EEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEE
Confidence 87664 78999998753 32111 1111121 222 22344 55678888776543 2 89999
Q ss_pred ecC-CCcceEEec-cccCCCcCeEEEEeec---CCCCCCeEEEEccCC-CeEEEEEcCCC
Q 018591 286 KRE-AFGKLCRVG-AITGHEGPVKCLQASP---NAVGGGFLLYSGSLD-KSLRVWWVSKQ 339 (353)
Q Consensus 286 ~~~-~~~~~~~~~-~~~~h~~~v~~~~~~~---~~~~~~~~l~s~~~d-g~i~iw~~~~~ 339 (353)
++. +++ ...+. ....+...+..++|+| + +++|++++.+ +.|.+|++...
T Consensus 288 ~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~d----g~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 288 KLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWS----DEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECTTSC-EEEEEEEEECSSCCTTCCCEEECTTC----TTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCC-EEEeeeeeecCCCCcccceecCCCcC----CCEEEEEEcCCCeEEEEEEchh
Confidence 996 443 22221 1333455677899999 8 8888888764 89999998765
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.1e-18 Score=153.26 Aligned_cols=226 Identities=9% Similarity=0.003 Sum_probs=154.1
Q ss_pred ceeeEEEEEe--CCEEEEecC-CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC-Cce
Q 018591 56 DGSVKAVVTV--GNKVFTAHQ-DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA-DSI 131 (353)
Q Consensus 56 ~~~v~~~~~~--~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i 131 (353)
..+|.+++|+ |+.|+.++. ||++++|+++++.. . .+..|. ..+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------~---------------------------~lt~~~~~~~ 67 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------V---------------------------KLNREPINSV 67 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------E---------------------------ECCSSCCSEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------E---------------------------eeeccccccc
Confidence 5578888887 889998877 99999999865541 1 111333 578
Q ss_pred EEEEEeC-CeEEEecC---CCcEEEEEcCC---ceeeeeccccCcceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCcccc
Q 018591 132 SCLTVYN-GLIYSGSW---DKTLKVWRVAD---LKCLESIKAHDDAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 132 ~~~~~~~-~~l~~~~~---dg~v~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
..+.|+| ..+++++. +....+|.+.. +........+...+.+++++++ .+++.+.++.+.+||+.+++
T Consensus 68 ~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~---- 143 (582)
T 3o4h_A 68 LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG---- 143 (582)
T ss_dssp CEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE----
T ss_pred ccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc----
Confidence 8899998 45555554 45556655432 2222222222222334444443 44555555566699998876
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCC----CcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEEEEec
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----GFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGS 277 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~ 277 (353)
....... .. .+++|+|||+++++++.+ +.|++||+.++... .+..+...+... +++|+.|+++.
T Consensus 144 -~~~l~~~-~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~~~~~~~~SpDG~~l~~~~ 213 (582)
T 3o4h_A 144 -LRELARL-PG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEGSFSSASISPGMKVTAGLE 213 (582)
T ss_dssp -EEEEEEE-SS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSCEEEEEEECTTSCEEEEEE
T ss_pred -EEEeecC-CC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCCccccceECCCCCEEEEcc
Confidence 3333322 22 688999999999988776 78999999877321 334455555444 55699999888
Q ss_pred CCC--eEEEEecCCCcceEEeccccCCCcCeEEEE--------eecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 278 ADK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQ--------ASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 278 ~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
.++ .|++||+.+++. . .+.+|...+..++ |+|| |.++++++.||.+++|++
T Consensus 214 ~~~~~~i~~~d~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~spd----g~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 214 TAREARLVTVDPRDGSV---E-DLELPSKDFSSYRPTAITWLGYLPD----GRLAVVARREGRSAVFID 274 (582)
T ss_dssp CSSCEEEEEECTTTCCE---E-ECCCSCSHHHHHCCSEEEEEEECTT----SCEEEEEEETTEEEEEET
T ss_pred CCCeeEEEEEcCCCCcE---E-EccCCCcChhhhhhccccceeEcCC----CcEEEEEEcCCcEEEEEE
Confidence 888 899999998763 3 4567777777777 9999 899999999999999999
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=7.7e-19 Score=158.20 Aligned_cols=273 Identities=9% Similarity=-0.029 Sum_probs=171.9
Q ss_pred EEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCce---eeEEEEEe--CCEEEEecC---------CCcEEEEEcc
Q 018591 21 SLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG---SVKAVVTV--GNKVFTAHQ---------DSRIRVWKVS 84 (353)
Q Consensus 21 ~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~--~~~l~s~~~---------dg~i~~w~~~ 84 (353)
+++|+ +++++ .+.|+.|++||+.+++....+.+|.. .+.+++|+ |++|++++. ++.|++||++
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67785 65555 45699999999999998887776654 38889998 888888876 7899999998
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE 162 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~ 162 (353)
+++. +... .....+..++|+| +.|+.+. ++.|++||+.+++...
T Consensus 99 ~g~~-----~~~~----------------------------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~ 144 (719)
T 1z68_A 99 NGEF-----VRGN----------------------------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ 144 (719)
T ss_dssp TTEE-----CCSS----------------------------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred CCcc-----ccce----------------------------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE
Confidence 8751 0000 0123577899999 6677764 7899999998877654
Q ss_pred ec-cccCcce-----------------EEEEEeCC--eEEEEcCCC----------------------------------
Q 018591 163 SI-KAHDDAV-----------------NGLVASKG--IVYSASADG---------------------------------- 188 (353)
Q Consensus 163 ~~-~~~~~~v-----------------~~i~~~~~--~l~~~~~dg---------------------------------- 188 (353)
.. .++...+ .+++|+++ .|++++.|.
T Consensus 145 l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~ 224 (719)
T 1z68_A 145 ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV 224 (719)
T ss_dssp CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEE
T ss_pred EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCee
Confidence 33 2222222 47899444 777776542
Q ss_pred cEEEEeCCCCCcc---cccceeeeeccCCceeeEEEEcCCCCeEEeecCC----CcEEEee----ccccccceeeeeecc
Q 018591 189 KIKAWGKELGKSH---CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----GFVMGWE----GNVEIVRWKLACETK 257 (353)
Q Consensus 189 ~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~~~ 257 (353)
.|++||+.+++.. .......+..+... +..++|+||++++++.... ..|.+|| ..++...........
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~ 303 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYY-FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEE 303 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHHTSCEE-EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEE
T ss_pred EEEEEECCCCCccceeEccCCccCCCCcce-EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccc
Confidence 7889999876510 00000122344444 4899999998777764322 2488888 666532211100002
Q ss_pred cccee-------EEEEEEcCcEEE--EecCCC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE-EEc
Q 018591 258 AHEMA-------VLCVCLVGEFLC--SGSADK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL-YSG 325 (353)
Q Consensus 258 ~~~~~-------v~~~~~~~~~l~--~~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l-~s~ 325 (353)
.+... ...++++|+.++ +...+| .|.+||+.+++ ...+..+...+..+.++ + ++.| +++
T Consensus 304 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d----~~~i~~~~ 374 (719)
T 1z68_A 304 SRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-T----QDSLFYSS 374 (719)
T ss_dssp CSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-C----SSEEEEEE
T ss_pred cCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-e----CCEEEEEE
Confidence 23322 335667787544 344555 57777876654 22344556668887777 5 4444 444
Q ss_pred cC----CCeEEEEEcCC
Q 018591 326 SL----DKSLRVWWVSK 338 (353)
Q Consensus 326 ~~----dg~i~iw~~~~ 338 (353)
.. ++..++|.+..
T Consensus 375 ~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 375 NEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SCGGGCTTCBEEEEEEC
T ss_pred ecCCCCCceEEEEEEeC
Confidence 44 48899998764
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=3e-18 Score=154.38 Aligned_cols=297 Identities=10% Similarity=0.025 Sum_probs=184.3
Q ss_pred CCCCceeeeeeCccC---ceEEEEEC--CcEEEEEeC---------CCcEEEEeCCCceee--EEeccCceeeEEEEEe-
Q 018591 3 CKSHRSLAVLSGHVG---SVSSLALC--GEFILSASQ---------GKDIIVWQQPDLRMF--TKFGHGDGSVKAVVTV- 65 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~---~v~~~~~~--~~~l~s~~~---------dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~- 65 (353)
..++++...+.+|.. .|.+++|+ |++|++++. |+.|++||+.+++.+ ..+ ...+..++|+
T Consensus 43 ~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SP 119 (719)
T 1z68_A 43 IETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSP 119 (719)
T ss_dssp SSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECS
T ss_pred cCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECC
Confidence 456676666766654 49999996 889998876 789999999998873 122 2457788887
Q ss_pred -CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCc---------eEEEE
Q 018591 66 -GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS---------ISCLT 135 (353)
Q Consensus 66 -~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i~~~~ 135 (353)
|+.|+.+. ++.|++|++.++..... .. .. ....++.++... ..++.
T Consensus 120 DG~~la~~~-~~~i~~~~~~~g~~~~l---~~-~~-------------------~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 120 VGSKLAYVY-QNNIYLKQRPGDPPFQI---TF-NG-------------------RENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp STTCEEEEE-TTEEEEESSTTSCCEEC---CC-CC-------------------BTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCEEEEEE-CCeEEEEeCCCCCcEEE---ec-CC-------------------CcCCeEcccccceeeeecccCcccEE
Confidence 78888875 67999999987753111 00 00 000111233222 25788
Q ss_pred EeC--CeEEEecCCC----------------------------------cEEEEEcCCceee--------eeccccCcce
Q 018591 136 VYN--GLIYSGSWDK----------------------------------TLKVWRVADLKCL--------ESIKAHDDAV 171 (353)
Q Consensus 136 ~~~--~~l~~~~~dg----------------------------------~v~iwd~~~~~~~--------~~~~~~~~~v 171 (353)
|+| +.|++++.|. .|++||+.+++.. ..+.+|...+
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF 255 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence 998 6787776542 7889999887653 2234678889
Q ss_pred EEEEEeC-CeE-EEEcCC----CcEEEEe----CCCCCcccccceeee----eccCCceee-----EEEEcCCCCeEEe-
Q 018591 172 NGLVASK-GIV-YSASAD----GKIKAWG----KELGKSHCHSLKGIL----EGHKDVSLN-----SVVVSDDGKWVYG- 231 (353)
Q Consensus 172 ~~i~~~~-~~l-~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~----~~~~~~~v~-----~~~~~~~~~~l~~- 231 (353)
..++|++ +.+ ++.... ..|.+|| ..+++ ..... ..+...+ . .+.|+|||+.++.
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD-----CPKTQEHIEESRTGWA-GGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE-----CCGGGEEEEECSSSCS-SSSSCCCCEECTTSSCEEEE
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc-----eEEEEecccccCCceE-ccccCCccEECCCCCeEEEE
Confidence 9999944 444 342222 2488899 76665 23333 3444433 4 7899999986554
Q ss_pred -ecCCC--cEEEeeccccccceeeeeeccccceeEEE--EEEcCcEEEEecC-----CCeEEEEecCC--Cc-ceEEecc
Q 018591 232 -GGSDG--FVMGWEGNVEIVRWKLACETKAHEMAVLC--VCLVGEFLCSGSA-----DKSIGIWKREA--FG-KLCRVGA 298 (353)
Q Consensus 232 -~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~-----dg~i~iw~~~~--~~-~~~~~~~ 298 (353)
...+| .|.+||+..+. ...+..+...+.. .. +++.|+..+. ++..++|.+.. +. ....+..
T Consensus 330 ~~~~~g~~~l~~~~~~~~~-----~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~ 403 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVEN-----AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC 403 (719)
T ss_dssp EECTTSCEEEEEESSCSTT-----CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST
T ss_pred EEccCCceEEEEEECCCCc-----eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC
Confidence 44555 46666766552 1122222222222 22 6666555544 47888998764 21 1223321
Q ss_pred -ccCCCcCeEEEEeecCCCCCCeEEE-EccCC--CeEEEEEcCCCCCc
Q 018591 299 -ITGHEGPVKCLQASPNAVGGGFLLY-SGSLD--KSLRVWWVSKQSST 342 (353)
Q Consensus 299 -~~~h~~~v~~~~~~~~~~~~~~~l~-s~~~d--g~i~iw~~~~~~~~ 342 (353)
+.+|...+..+.|+|+ +++++ +++.+ ..+.+|++.+++..
T Consensus 404 ~~~~~~~~~~~~~~s~d----g~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 404 HLRKERCQYYTASFSDY----AKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp TTTTTTBCBEEEEECGG----GSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred ccCCCCCceEEEEECCC----CCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 3346778889999998 66655 44443 47889998877644
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=7.4e-18 Score=140.93 Aligned_cols=304 Identities=8% Similarity=-0.055 Sum_probs=178.5
Q ss_pred CCCCCceeeeeeCccCc-----eEEEEEC--CcEEEEEeCC---CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE
Q 018591 2 PCKSHRSLAVLSGHVGS-----VSSLALC--GEFILSASQG---KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV 69 (353)
Q Consensus 2 ~~~~~~~~~~l~~h~~~-----v~~~~~~--~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l 69 (353)
...+++.+..+..+... +.+++|+ |++|+....+ ..|.+||+.+++......++......+.|+ ++.|
T Consensus 16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l 95 (396)
T 3c5m_A 16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAF 95 (396)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEE
T ss_pred cCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEE
Confidence 34567777777766544 7778886 8887766543 478889998887665544433323335666 7889
Q ss_pred EEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe---
Q 018591 70 FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG--- 144 (353)
Q Consensus 70 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~--- 144 (353)
+.++.++.|++|++.+++... +...+.. .......+.........- .......++| +.++..
T Consensus 96 ~~~~~~~~l~~~d~~~~~~~~---~~~~~~~------~~~~g~~l~~~~~~~~~~----~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 96 FYVKNELNLMKVDLETLEEQV---IYTVDEE------WKGYGTWVANSDCTKLVG----IEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp EEEETTTEEEEEETTTCCEEE---EEECCTT------EEEEEEEEECTTSSEEEE----EEEEGGGCCCCCSHHHHHHHH
T ss_pred EEEEcCCcEEEEECCCCCcEE---EEecccc------cCCCCCEEEeccCCcccc----ccccccccCCCCcceeeeeec
Confidence 999888899999998765321 1111111 000011111000000000 0000123344 334333
Q ss_pred --cCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--C-eEEEEcCC------CcEEEEeCCCCCcccccceeeeeccC
Q 018591 145 --SWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--G-IVYSASAD------GKIKAWGKELGKSHCHSLKGILEGHK 213 (353)
Q Consensus 145 --~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~-~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~ 213 (353)
..+..|.+||+.+++..... .+...+..+.|++ + .++..+.+ ..|.+||+..++ .........
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~ 236 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAE 236 (396)
T ss_dssp HTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCT
T ss_pred cCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCC
Confidence 35678999999887765544 4567788899955 3 45554433 468888887654 222222111
Q ss_pred CceeeEEEEcCCCCeEEeecCC-----CcEEEeeccccccceeeeeeccccceeEEEEEE-cCcEEEEec----------
Q 018591 214 DVSLNSVVVSDDGKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL-VGEFLCSGS---------- 277 (353)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~---------- 277 (353)
...+..++|+|++++|+..+.+ +.|++||+.++... ........ . ..+++ ++++++.++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~--~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE--EVMVMPPC--S-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE--EEEECCSE--E-EEEECSSSSEEEEEECCC-------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE--EeeeCCCC--C-CCccCCCCceEEEecCCcceeeccc
Confidence 3335789999999987766443 34999999876322 11222222 2 56777 888887654
Q ss_pred ------CCCeEEEEecCCCcceEEeccccCCCc-----------CeEEEEeecCCCCCCeEEEEccC-CCeEEEEEcC
Q 018591 278 ------ADKSIGIWKREAFGKLCRVGAITGHEG-----------PVKCLQASPNAVGGGFLLYSGSL-DKSLRVWWVS 337 (353)
Q Consensus 278 ------~dg~i~iw~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~ 337 (353)
.++.|++||+.+++. ..+..+.. .+..+.|+|+ ++.|+.++. ++...+|.+.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSA----QKLCKHSTSWDVLDGDRQITHPHPSFTPN----DDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBC----CEEEECCCCCCCBTTBSSTTCCCCEECTT----SSEEEEEECTTSSCEEEEEE
T ss_pred cccccCCCCcEEEEecccCce----EEccCCCCccccccccccCCCCCceEccC----CCeEEEEecCCCCceEEEEE
Confidence 347899999987652 22333333 2567889999 877766654 5665666544
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=4.2e-17 Score=134.07 Aligned_cols=270 Identities=10% Similarity=0.074 Sum_probs=175.7
Q ss_pred CCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec----------CCCcEEEEEcccCccceeEEeecccccc
Q 018591 34 QGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH----------QDSRIRVWKVSRSSENVFRLVDTLPTTK 101 (353)
Q Consensus 34 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 101 (353)
.|+.|.+||..+++.+..+..+..+ .++++ +++++++. .++.|.+||..+.+ .+..++...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-----~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-----FEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-----EEEEEEECT
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-----EEEEEEcCc
Confidence 4789999999999999888877666 78887 77888875 36789999987665 222221100
Q ss_pred ceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeee-ccccCcceEEEEE
Q 018591 102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLES-IKAHDDAVNGLVA 176 (353)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~v~~i~~ 176 (353)
. . ..+......++++| ++|+++.. ++.|.+||+.+++.+.. +... .. ..+.+
T Consensus 102 ~-------------------~--~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~-~~v~~ 158 (361)
T 2oiz_A 102 K-------------------R--VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GC-WSVIP 158 (361)
T ss_dssp T-------------------B--CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TE-EEEEE
T ss_pred c-------------------c--cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-Cc-ceeEE
Confidence 0 0 01223445688888 67777753 68999999999998887 6532 22 22333
Q ss_pred -eC--CeEEEEcCCCcEEEEeCCCCCcccccce--eeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccccee
Q 018591 177 -SK--GIVYSASADGKIKAWGKELGKSHCHSLK--GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK 251 (353)
Q Consensus 177 -~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 251 (353)
+. ..+++.+.||.+.+|+............ ..+..... + ..+.++|++..++..+.++.+.++|+........
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~ 236 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD-P-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD 236 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS-C-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC-c-eEEEecccCCEEEEEeCCCeEEEEEecCCCceec
Confidence 32 3788889999999999865321000000 11111111 1 2334467777777777889999999875421111
Q ss_pred eeeec----------cccceeEEEEEEcCcEEEEecC-----------CCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591 252 LACET----------KAHEMAVLCVCLVGEFLCSGSA-----------DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ 310 (353)
Q Consensus 252 ~~~~~----------~~~~~~v~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~ 310 (353)
..... .........++++++.++++.. .+.|.+||+.+.+ .+..+..+. +.+++
T Consensus 237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---~v~~i~~~~--p~~ia 311 (361)
T 2oiz_A 237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---RVARIPGRD--ALSMT 311 (361)
T ss_dssp EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE---EEEEEECTT--CCEEE
T ss_pred ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc---EEEEEecCC--eeEEE
Confidence 00000 0011112567778776665432 4589999999887 566666665 99999
Q ss_pred eecCCCCCCeEEEEccCCCeEEEEEcCCC--CCcccc
Q 018591 311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQ--SSTSDS 345 (353)
Q Consensus 311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~ 345 (353)
|+|+ |++|++++. +.|.+||.+++ +.+.+.
T Consensus 312 ~spd----g~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 312 IDQQ----RNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EETT----TTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred ECCC----CCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 9999 999998887 99999999999 776653
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=7.3e-16 Score=125.33 Aligned_cols=264 Identities=9% Similarity=0.036 Sum_probs=169.6
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEE
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 93 (353)
-+.+.+|+++ |+++++...++.+.+++..... .+..+.... -.++.|.+||.++++ .
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~i~~~d~~~g~-----~ 81 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKF---VYQQRGLGP-------------IEEDTILVIDPNNAE-----I 81 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTS---CBSCGGGCS-------------CCSCCEEEECTTTCC-----E
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcce---eeccccccc-------------ccCCcEEEEECCCCe-----E
Confidence 4678889999 7788877777765554433221 121111100 146789999987665 1
Q ss_pred eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce-eeeec------
Q 018591 94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK-CLESI------ 164 (353)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~-~~~~~------ 164 (353)
...... ++......+++++ +++++...++.|++||..... .+..+
T Consensus 82 ~~~~~~--------------------------~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 82 LQSSGK--------------------------NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp EEEECT--------------------------TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC
T ss_pred EeccCC--------------------------CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC
Confidence 111110 2345678899988 677777788999999975432 44444
Q ss_pred ---cccCcceEEEEEe--CC-eEEEEc-CCCcEEEEeCCCCCcccccceeeeec----------cCCceeeEEEEcCC-C
Q 018591 165 ---KAHDDAVNGLVAS--KG-IVYSAS-ADGKIKAWGKELGKSHCHSLKGILEG----------HKDVSLNSVVVSDD-G 226 (353)
Q Consensus 165 ---~~~~~~v~~i~~~--~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~-~ 226 (353)
..+-.....+++. ++ .+++.+ .++.|++||. ++. ....+.. +...+ ..++++|+ +
T Consensus 136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~-----~~~~~~~~g~~~~~~~~~~~~p-~gia~d~~~g 208 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGK-----FVTQWGEESSGSSPRPGQFSVP-HSLALVPHLD 208 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSC-----EEEEECEECCSSSCCTTEESCE-EEEEEETTTT
T ss_pred CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCC-----EEEEeccCCCCCCCCCcccCCC-cEEEEECCCC
Confidence 2334468899994 34 445554 5899999994 443 3333321 22235 89999998 7
Q ss_pred CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--------cCcEEEEecCCCeEEEEecCCCcceEEecc
Q 018591 227 KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--------VGEFLCSGSADKSIGIWKREAFGKLCRVGA 298 (353)
Q Consensus 227 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 298 (353)
.++++...++.|++|+..+++....... ..+...+..+.+ +++..++...+..|++|+..+++....+..
T Consensus 209 ~l~v~d~~~~~I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~ 286 (329)
T 3fvz_A 209 QLCVADRENGRIQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP 286 (329)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC
Confidence 7778888899999999986532222111 122223333333 344444455567999999998874433322
Q ss_pred ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 299 ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 299 ~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
..++...+..++++|+ |.++++...++.|++|++...
T Consensus 287 ~~~~~~~p~~ia~~~d----G~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 287 VRKHFDMPHDIVASED----GTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SSSCCSSEEEEEECTT----SEEEEEESSSCCEEEEEEEEC
T ss_pred CCCccCCeeEEEECCC----CCEEEEECCCCEEEEEeCCcc
Confidence 2467778999999999 999999999999999998754
No 165
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.78 E-value=5.4e-16 Score=125.90 Aligned_cols=264 Identities=11% Similarity=0.008 Sum_probs=176.4
Q ss_pred CCCcEEEEeCCCceeeEEec------cCceeeEEEEEeCCEE-EEecCCCcEEEEEcccCccceeEEeeccccccceeee
Q 018591 34 QGKDIIVWQQPDLRMFTKFG------HGDGSVKAVVTVGNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGK 106 (353)
Q Consensus 34 ~dg~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (353)
.++.|.++|.++++....+. ........+.++++.+ ++...++.|.+||..+.+ .+..+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~-----~~~~i--------- 80 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFK-----EVGRI--------- 80 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCC-----EEEEE---------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccE-----EEEEc---------
Confidence 37899999999998765542 1123456777885554 455567899999998876 22222
Q ss_pred ecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEec-CCCcEEEEEcCCceeeeeccccC-----cceEEEEEeCC
Q 018591 107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGS-WDKTLKVWRVADLKCLESIKAHD-----DAVNGLVASKG 179 (353)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~~ 179 (353)
........+++++ +.++++. .++.|.+||..+++....+.... .....+++.++
T Consensus 81 -------------------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~ 141 (328)
T 3dsm_A 81 -------------------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGK 141 (328)
T ss_dssp -------------------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETT
T ss_pred -------------------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECC
Confidence 1224566788855 5666665 78999999999998877665322 14556777677
Q ss_pred eEEEEc--CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC----------CcEEEeeccccc
Q 018591 180 IVYSAS--ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----------GFVMGWEGNVEI 247 (353)
Q Consensus 180 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~ 247 (353)
.++++. .++.|.++|..+++ ....+.... .+ ..++++|+|+++++...+ +.|.++|..+.+
T Consensus 142 ~lyv~~~~~~~~v~viD~~t~~-----~~~~i~~g~-~p-~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~ 214 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTETDK-----VVDELTIGI-QP-TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT 214 (328)
T ss_dssp EEEEEECTTCCEEEEEETTTTE-----EEEEEECSS-CB-CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred EEEEEcCCCCCEEEEEECCCCe-----EEEEEEcCC-Cc-cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe
Confidence 666665 48899999999886 444444322 33 789999999877777655 789999998773
Q ss_pred cceeeeeecc-ccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc-
Q 018591 248 VRWKLACETK-AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG- 325 (353)
Q Consensus 248 ~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~- 325 (353)
..... ... +....-.++++++++|+++.. .|.+||..+++.. ....+..+......++++|+ ++.++++.
T Consensus 215 v~~~~--~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~-~~~~~~~~~~~p~gi~vdp~---~g~lyva~~ 286 (328)
T 3dsm_A 215 VEKQF--KFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP-VRPFLEFRDTKYYGLTVNPN---NGEVYVADA 286 (328)
T ss_dssp EEEEE--ECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC-SSCSBCCCSSCEEEEEECTT---TCCEEEEEC
T ss_pred EEEEE--ecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee-eeeeecCCCCceEEEEEcCC---CCeEEEEcc
Confidence 22111 111 222334455556788877655 8999999876631 11112222457899999995 16677776
Q ss_pred ---cCCCeEEEEEcCCCCCccccc
Q 018591 326 ---SLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 326 ---~~dg~i~iw~~~~~~~~~~~~ 346 (353)
..++.|.+|+.. ++.+.+.+
T Consensus 287 ~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 287 IDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp TTSSSEEEEEEECTT-CCEEEEEE
T ss_pred cccccCCEEEEECCC-CCEEEEEE
Confidence 678999999998 77665543
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=2.7e-16 Score=140.36 Aligned_cols=288 Identities=10% Similarity=0.042 Sum_probs=175.7
Q ss_pred eeeeeCccCceEEEEECCcEE--EEE--eCCCcEEEEeCCCceeeEEeccCceeeE---------EEEEe----CCE-EE
Q 018591 9 LAVLSGHVGSVSSLALCGEFI--LSA--SQGKDIIVWQQPDLRMFTKFGHGDGSVK---------AVVTV----GNK-VF 70 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~~~~l--~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~---------~~~~~----~~~-l~ 70 (353)
...+.+|...|..++++++.+ ++. +.++...||....+.....+..+...+. ...|+ ++. |+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 345778999999999986543 334 3478999999655555566666655544 44343 676 66
Q ss_pred EecC-CCcEEEEEcc--c-CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe
Q 018591 71 TAHQ-DSRIRVWKVS--R-SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG 144 (353)
Q Consensus 71 s~~~-dg~i~~w~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~ 144 (353)
.++. +..|.+|++. . +.. ..+...+. ..|...+..++|+| +.|+++
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~---~~l~~~~~-------------------------~~~~~~~~~~~~spDg~~l~~~ 147 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVP---RPLTPVSA-------------------------VGGGLRWADPVLLPERGEVWCM 147 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCC---EECSCCCC-------------------------STTCEEEEEEEEETTTTEEEEE
T ss_pred EEECCCCeEEEEcCCCCCCCCC---EeccCCcc-------------------------CCCCccccCcEECCCCCEEEEE
Confidence 5443 5566666654 2 221 11110000 01556788999999 678888
Q ss_pred cCC----------CcEEEEEcCC------ceeeeecc-ccCcceEEEEEeCC--eEEEEcCC--------CcEEEEeCC-
Q 018591 145 SWD----------KTLKVWRVAD------LKCLESIK-AHDDAVNGLVASKG--IVYSASAD--------GKIKAWGKE- 196 (353)
Q Consensus 145 ~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~v~~i~~~~~--~l~~~~~d--------g~i~iwd~~- 196 (353)
+.+ ..|++||+.+ ++.. .+. .+...+..++|+++ .|+.++.+ ..|++||+.
T Consensus 148 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 148 AEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE 226 (662)
T ss_dssp EEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred EecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC
Confidence 776 5899999987 5543 444 55567788888443 67766644 379999998
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC--cEEEeeccccccceeeeeeccccc----------eeEE
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG--FVMGWEGNVEIVRWKLACETKAHE----------MAVL 264 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~----------~~v~ 264 (353)
++.. .........+.... ..++|+|||++++++..++ .|.+||..++.. . .....+. ....
T Consensus 227 ~g~~--~~~~~l~~~~~~~~-~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--~--~l~~~~~~~~~p~w~~~~~~~ 299 (662)
T 3azo_A 227 DGRF--ADTRTLLGGPEEAI-AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--T--QLCRREEEFAGPLWTPGMRWF 299 (662)
T ss_dssp TSCE--EEEEEEEEETTBCE-EEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--E--ESSCCSSBSSCCCCSTTCCSE
T ss_pred CCcc--cccEEeCCCCCceE-cceEECCCCeEEEEECCCCCeEEEEEECCCCce--e--ecccccccccCccccccCceE
Confidence 4510 01333333334444 8999999999888888888 555566544421 1 1111111 1123
Q ss_pred EEEEcCcEEEEecCCCeEEEEe--cCCCcceEEeccccCCCcCeEEE-EeecCCCCCCeEEEEccCCCe--EEEEEcCCC
Q 018591 265 CVCLVGEFLCSGSADKSIGIWK--REAFGKLCRVGAITGHEGPVKCL-QASPNAVGGGFLLYSGSLDKS--LRVWWVSKQ 339 (353)
Q Consensus 265 ~~~~~~~~l~~~~~dg~i~iw~--~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~ 339 (353)
.+.+++++++++.. +.++||. ..+++ +..+..|...+..+ +++++ .-++++++.+.. |.+|++.++
T Consensus 300 ~~~~~~~~~~~~~~-~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 300 APLANGLIAVVHGK-GAAVLGILDPESGE----LVDAAGPWTEWAATLTVSGT----RAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EECTTSCEEEEEBS-SSCEEEEEETTTTE----EEECCSSCCEEEEEEEEETT----EEEEEEEETTEEEEEEEEETTTC
T ss_pred eEeCCCEEEEEEEc-CccEEEEEECCCCc----EEEecCCCCeEEEEEecCCC----EEEEEEcCCCCCCEEEEEECCCC
Confidence 34446888999988 9999994 44432 44566677778777 55544 445555666654 555566565
Q ss_pred CC
Q 018591 340 SS 341 (353)
Q Consensus 340 ~~ 341 (353)
+.
T Consensus 371 ~~ 372 (662)
T 3azo_A 371 RA 372 (662)
T ss_dssp CE
T ss_pred ce
Confidence 43
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=1e-15 Score=125.85 Aligned_cols=264 Identities=11% Similarity=0.068 Sum_probs=173.4
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccC------ceeeEEEEE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHG------DGSVKAVVT 64 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~------~~~v~~~~~ 64 (353)
..+++.+.++..+..+ .++|+ +++++++. .++.|.+||..+++.+..+... ......+++
T Consensus 38 ~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~ 115 (361)
T 2oiz_A 38 YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQ 115 (361)
T ss_dssp TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEE
T ss_pred CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEE
Confidence 4577888888887776 88996 88888876 3678999999999988887532 234456777
Q ss_pred e--CCEEEEecC--CCcEEEEEcccCccceeEEeec-cccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-
Q 018591 65 V--GNKVFTAHQ--DSRIRVWKVSRSSENVFRLVDT-LPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN- 138 (353)
Q Consensus 65 ~--~~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 138 (353)
+ +++|+++.. ++.|.+||+++++ .+.. ++. .. ...+.+.|
T Consensus 116 spdg~~l~v~n~~~~~~v~v~d~~~~~-----~~~~~i~~----------------------------~~-~~~v~~~p~ 161 (361)
T 2oiz_A 116 TTDGKFIVLQNASPATSIGIVDVAKGD-----YVEDVTAA----------------------------AG-CWSVIPQPN 161 (361)
T ss_dssp CTTSSEEEEEEESSSEEEEEEETTTTE-----EEEEEGGG----------------------------TT-EEEEEECTT
T ss_pred CCCCCEEEEECCCCCCeEEEEECCCCc-----EEEEEecC----------------------------CC-cceeEEcCC
Confidence 6 888888763 5799999998875 3333 221 11 11133444
Q ss_pred --CeEEEecCCCcEEEEEcCC-ceee------eeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceee
Q 018591 139 --GLIYSGSWDKTLKVWRVAD-LKCL------ESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGI 208 (353)
Q Consensus 139 --~~l~~~~~dg~v~iwd~~~-~~~~------~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 208 (353)
..+++.+.||.+.+|++.. ++.. ..+.....++....- .+..++..+.++.+.++|+...... ....
T Consensus 162 ~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~---~~~~ 238 (361)
T 2oiz_A 162 RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK---VDGP 238 (361)
T ss_dssp SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE---EEEE
T ss_pred CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCce---eccc
Confidence 4677888899999999864 4443 122222222211111 2346666678899999998765411 1111
Q ss_pred eec------cC----CceeeEEEEcCCCCeEEeecC-----------CCcEEEeeccccccceeeeeeccccceeEEEEE
Q 018591 209 LEG------HK----DVSLNSVVVSDDGKWVYGGGS-----------DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC 267 (353)
Q Consensus 209 ~~~------~~----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (353)
+.. .. ... ..++++|+++.++++.. .+.|.+||+.+. +....+..+...-..++
T Consensus 239 ~~~~~~~~~~~~~~p~g~-~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~----~~v~~i~~~~p~~ia~s 313 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGY-NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK----QRVARIPGRDALSMTID 313 (361)
T ss_dssp EESCCHHHHHTTCEECCS-SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT----EEEEEEECTTCCEEEEE
T ss_pred ccccCccccccccccCCe-eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC----cEEEEEecCCeeEEEEC
Confidence 110 00 111 34789999888777543 347999999988 34444444334455667
Q ss_pred EcCcEEEEecCCCeEEEEecCCC--cceEEeccccCCCcCeEEEEeecC
Q 018591 268 LVGEFLCSGSADKSIGIWKREAF--GKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 268 ~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
++|++|++++. +.|.+||..++ + .+..+..+......++++|+
T Consensus 314 pdg~~l~v~n~-~~v~v~D~~t~~l~---~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 314 QQRNLMLTLDG-GNVNVYDISQPEPK---LLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp TTTTEEEEECS-SCEEEEECSSSSCE---EEEEETTSCSSEEEEEECCC
T ss_pred CCCCEEEEeCC-CeEEEEECCCCcce---eeEEeccCCCCcEEEEecCC
Confidence 78999998887 99999999997 6 55665566677889999998
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=4.2e-15 Score=118.47 Aligned_cols=238 Identities=12% Similarity=0.115 Sum_probs=154.3
Q ss_pred CceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceE
Q 018591 55 GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS 132 (353)
Q Consensus 55 ~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 132 (353)
+-....+++++ +..+++...++.|.+||.+... +..+..... -.++...+.
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~------~~~~~~~~~---------------------~~~~~~~p~ 80 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF------KFQFGECGK---------------------RDSQLLYPN 80 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE------EEEECCBSS---------------------STTCBSSEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE------EEEecccCC---------------------CcccccCce
Confidence 34567778887 6666777788899999976321 111110000 003445678
Q ss_pred EEEEe-C-CeEEEecC--CCcEEEEEcCCceeeeeccc-cCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccc
Q 018591 133 CLTVY-N-GLIYSGSW--DKTLKVWRVADLKCLESIKA-HDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSL 205 (353)
Q Consensus 133 ~~~~~-~-~~l~~~~~--dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 205 (353)
.+++. + +.++++.. ++.|.+|| .+++.+..+.. +...+.++++ +++ .+++...++.|.+||.... .
T Consensus 81 ~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~ 153 (286)
T 1q7f_A 81 RVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------V 153 (286)
T ss_dssp EEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------E
T ss_pred EEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------E
Confidence 88984 4 55555553 78999999 56776666532 3456889999 333 5556667889999996533 2
Q ss_pred eeeee--ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec--cccceeEEEEE--EcCcEEEEecCC
Q 018591 206 KGILE--GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET--KAHEMAVLCVC--LVGEFLCSGSAD 279 (353)
Q Consensus 206 ~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~--~~~~~l~~~~~d 279 (353)
...+. .+...+ ..++++|+++++++...++.|++||.... ....+ .++......++ ++|+++++...+
T Consensus 154 ~~~~~~~~~~~~p-~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~ 227 (286)
T 1q7f_A 154 LHKFGCSKHLEFP-NGVVVNDKQEIFISDNRAHCVKVFNYEGQ-----YLRQIGGEGITNYPIGVGINSNGEILIADNHN 227 (286)
T ss_dssp EEEEECTTTCSSE-EEEEECSSSEEEEEEGGGTEEEEEETTCC-----EEEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred EEEeCCCCccCCc-EEEEECCCCCEEEEECCCCEEEEEcCCCC-----EEEEEccCCccCCCcEEEECCCCCEEEEeCCC
Confidence 33332 233344 89999999998888888999999997543 11222 12123344444 458888888777
Q ss_pred C-eEEEEecCCCcceEEeccccCC--CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 280 K-SIGIWKREAFGKLCRVGAITGH--EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 280 g-~i~iw~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
+ .|.+||.. ++. +..+..+ ...+.+++++|+ ++++++ +.|+.|++|++....+
T Consensus 228 ~~~i~~~~~~-g~~---~~~~~~~~~~~~~~~i~~~~~----g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 228 NFNLTIFTQD-GQL---ISALESKVKHAQCFDVALMDD----GSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp SCEEEEECTT-SCE---EEEEEESSCCSCEEEEEEETT----TEEEEE-ETTTEEEEEECSCCCC
T ss_pred CEEEEEECCC-CCE---EEEEcccCCCCcceeEEECCC----CcEEEE-CCCCeEEEEEcccccc
Confidence 6 99999964 342 3333323 234789999999 888777 5699999999876543
No 169
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=6.1e-16 Score=126.93 Aligned_cols=248 Identities=12% Similarity=0.060 Sum_probs=154.7
Q ss_pred CCCCceeeeeeCcc-CceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccC------ceeeEEEEEe--CCEEE
Q 018591 3 CKSHRSLAVLSGHV-GSVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHG------DGSVKAVVTV--GNKVF 70 (353)
Q Consensus 3 ~~~~~~~~~l~~h~-~~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~--~~~l~ 70 (353)
..+++.+..+..+. ..+..++|+ ++++ +++..++.|.+||+.+++....+..+ ...+..++|+ +++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 107 (349)
T 1jmx_B 28 VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 107 (349)
T ss_dssp TTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred CCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEE
Confidence 45677777777553 257888896 6654 55667899999999999988777532 2336788887 77888
Q ss_pred EecCC------------CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591 71 TAHQD------------SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN 138 (353)
Q Consensus 71 s~~~d------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 138 (353)
+++.+ +.|.+||+.+++.... +.. + .+...+.+++|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~---------------------------~-~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 108 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRT---------------------------F-PMPRQVYLMRAAD 157 (349)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEE---------------------------E-ECCSSCCCEEECT
T ss_pred EEcccccccccccccCCCeEEEEECCCccccce--eee---------------------------c-cCCCcccceeECC
Confidence 88865 8999999987542110 000 0 2334578889998
Q ss_pred -CeEEEecCCCcEEEEEcCCceeeeeccccCc------------------------ceEEEEEeCC---eEEEEcCCCcE
Q 018591 139 -GLIYSGSWDKTLKVWRVADLKCLESIKAHDD------------------------AVNGLVASKG---IVYSASADGKI 190 (353)
Q Consensus 139 -~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------------------------~v~~i~~~~~---~l~~~~~dg~i 190 (353)
..+++++. .|.+||+.+++.+..+..+.. ....+++.++ ..........+
T Consensus 158 dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 158 DGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp TSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred CCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 33666543 499999999887776643320 1223333211 00000000112
Q ss_pred EEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc
Q 018591 191 KAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV 269 (353)
Q Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 269 (353)
..+|..+++.. .......... +..++++| ++++++++ ++.|.+||+.+++...... ..+.....+++++
T Consensus 236 ~~~~~~~~~~~----~~~~~~~~~~-~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~s~d 305 (349)
T 1jmx_B 236 LSVDLKTGKTH----TQEFADLTEL-YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN---LDHTYYCVAFDKK 305 (349)
T ss_dssp EEEETTTCCEE----EEEEEECSSC-EEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEECSS
T ss_pred EEEeccCCcEE----ecccccCCCc-ceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc---CCCCccceEECCC
Confidence 22444444310 1111112233 38999999 99999988 8899999998873222211 1223334556667
Q ss_pred CcEEEEecCCCeEEEEecCCCcc
Q 018591 270 GEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 270 ~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
+++|++++.++.|++||..+++.
T Consensus 306 g~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp SSCEEEESBSSEEEEEETTTTEE
T ss_pred CCEEEEecCCCeEEEEeccccce
Confidence 88888888899999999998763
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=1.5e-14 Score=115.19 Aligned_cols=232 Identities=15% Similarity=0.197 Sum_probs=152.7
Q ss_pred CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc------CceeeEEEEEe--CCEEEEecC--CCcEEEE
Q 018591 14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH------GDGSVKAVVTV--GNKVFTAHQ--DSRIRVW 81 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~------~~~~v~~~~~~--~~~l~s~~~--dg~i~~w 81 (353)
+|-....+++++ ++++++...++.|.+||.. ++.+..+.. +...+..++++ +..++.+.. ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455689999996 7788888889999999976 666666632 34567888884 445555443 7899999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~ 159 (353)
+.+ +. .+..+.. .+...+.++++++ +++++...++.|.+||. +++
T Consensus 106 d~~-g~-----~~~~~~~--------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 152 (286)
T 1q7f_A 106 NQY-GQ-----FVRKFGA--------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGN 152 (286)
T ss_dssp CTT-SC-----EEEEECT--------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSC
T ss_pred CCC-Cc-----EEEEecC--------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCC
Confidence 943 33 1111110 2334678899988 56666667889999996 455
Q ss_pred eeeecc--ccCcceEEEEEe-CC-eEEEEcCCCcEEEEeCCCCCcccccceeeeecc--CCceeeEEEEcCCCCeEEeec
Q 018591 160 CLESIK--AHDDAVNGLVAS-KG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGH--KDVSLNSVVVSDDGKWVYGGG 233 (353)
Q Consensus 160 ~~~~~~--~~~~~v~~i~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~ 233 (353)
.+..+. .+...+.++++. ++ .+++...++.|++||.... ....+... ...+ ..++++++++++++..
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~g~~~~p-~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGITNYP-IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTSCSE-EEEEECTTCCEEEEEC
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEccCCccCCC-cEEEECCCCCEEEEeC
Confidence 555553 344568899994 34 5555567899999997543 23333322 2344 8999999999888887
Q ss_pred CCC-cEEEeeccccccceeeeeeccccceeE--EEEEEcCcEEEEecCCCeEEEEecCCC
Q 018591 234 SDG-FVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 234 ~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
.++ .|.+||.... ....... ......+ .++.++|+++++ +.++.|++|++...
T Consensus 226 ~~~~~i~~~~~~g~-~~~~~~~--~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 226 HNNFNLTIFTQDGQ-LISALES--KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SSSCEEEEECTTSC-EEEEEEE--SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCEEEEEECCCCC-EEEEEcc--cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 776 9999996543 1111111 1111123 444556877666 57999999998653
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=5.4e-15 Score=120.56 Aligned_cols=264 Identities=10% Similarity=0.052 Sum_probs=164.5
Q ss_pred CceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591 17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR 92 (353)
Q Consensus 17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~ 92 (353)
..|.+++|+ +..++..+.++.++.| .++....+..+...+.+++|+ ++.++++..++.|.+||.++++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~- 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP- 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-
Confidence 457778886 5566666788999999 455666666666677889997 66666788889999999877652111
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC----CcEEEEEcCCceeeeecc-
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD----KTLKVWRVADLKCLESIK- 165 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d----g~v~iwd~~~~~~~~~~~- 165 (353)
...+...+.++++++ .++++...+ +.|.+||..+++....+.
T Consensus 82 -------------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 130 (333)
T 2dg1_A 82 -------------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED 130 (333)
T ss_dssp -------------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred -------------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc
Confidence 013446789999988 445554454 589999988766543332
Q ss_pred -ccCcceEEEEE-eCCeEEEEcC-------CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCC
Q 018591 166 -AHDDAVNGLVA-SKGIVYSASA-------DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSD 235 (353)
Q Consensus 166 -~~~~~v~~i~~-~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d 235 (353)
.+...+.++++ +++.++.+.. .+.|..+|...++ ... +......+ ..++|+|+++.++ +...+
T Consensus 131 ~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~-----~~~-~~~~~~~~-~~i~~~~dg~~l~v~~~~~ 203 (333)
T 2dg1_A 131 LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-----VTP-IIQNISVA-NGIALSTDEKVLWVTETTA 203 (333)
T ss_dssp SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-----EEE-EEEEESSE-EEEEECTTSSEEEEEEGGG
T ss_pred CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE-----EEE-eecCCCcc-cceEECCCCCEEEEEeCCC
Confidence 23457889999 4444444443 3556667765544 222 21222233 8899999998654 45567
Q ss_pred CcEEEeecccc-cccee----eeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccc---cCCCcC
Q 018591 236 GFVMGWEGNVE-IVRWK----LACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAI---TGHEGP 305 (353)
Q Consensus 236 g~i~i~d~~~~-~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~h~~~ 305 (353)
+.|.+|+.... ..... ......++ ..+..+.+ +|+++++...++.|.+||.. ++....+... .+|...
T Consensus 204 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~ 281 (333)
T 2dg1_A 204 NRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLR 281 (333)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCB
T ss_pred CeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccC
Confidence 89999998642 11111 11111121 23344444 57877777778999999984 4432222111 122236
Q ss_pred eEEEEeecCCCCCCeEEEEccCC
Q 018591 306 VKCLQASPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 306 v~~~~~~~~~~~~~~~l~s~~~d 328 (353)
+.+++|+|+ +..|+.++.+
T Consensus 282 ~~~~~~~~d----g~~L~v~~~~ 300 (333)
T 2dg1_A 282 STHPQFIPG----TNQLIICSND 300 (333)
T ss_dssp CCEEEECTT----SCEEEEEEEC
T ss_pred cceEEECCC----CCEEEEEeCc
Confidence 899999998 7666655544
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=8.6e-15 Score=120.86 Aligned_cols=247 Identities=13% Similarity=0.135 Sum_probs=151.3
Q ss_pred ccCceEEEEEC--CcEEEEEeCCCcEEEEeCC-CceeeEEeccC-ceeeEEEEEe--CCE--EEEec-------------
Q 018591 15 HVGSVSSLALC--GEFILSASQGKDIIVWQQP-DLRMFTKFGHG-DGSVKAVVTV--GNK--VFTAH------------- 73 (353)
Q Consensus 15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~-~~~v~~~~~~--~~~--l~s~~------------- 73 (353)
+...+..++|+ +++|++++.+ .|.+|++. +++........ .+....++++ +++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 34468889996 8889999888 99999987 77765433211 1223445665 553 44553
Q ss_pred CCCcEEEEEccc-CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCc
Q 018591 74 QDSRIRVWKVSR-SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKT 149 (353)
Q Consensus 74 ~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~ 149 (353)
.+|.+.+|+++. ++.. ..+...+ ..+...+.+++|+| ++++++. .++.
T Consensus 117 ~~g~v~v~~~~~~g~~~--~~~~~~~--------------------------~~~~~~~~~~~~spdG~~l~~~~~~~~~ 168 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLE--KNVQNYE--------------------------YQENTGIHGMVFDPTETYLYSADLTANK 168 (365)
T ss_dssp SCCEEEEEEECTTCCEE--EEEEEEE--------------------------CCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCceEEEEccCCCCcCc--ceEeeEE--------------------------eCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence 688999999974 3210 1111000 02456788999999 5666654 4689
Q ss_pred EEEEEcC-Cceee--eecc--ccCcceEEEEEeC-C-eEEEEc-CCCcEEEEeCC--CCCccc-ccceeeeec----cCC
Q 018591 150 LKVWRVA-DLKCL--ESIK--AHDDAVNGLVASK-G-IVYSAS-ADGKIKAWGKE--LGKSHC-HSLKGILEG----HKD 214 (353)
Q Consensus 150 v~iwd~~-~~~~~--~~~~--~~~~~v~~i~~~~-~-~l~~~~-~dg~i~iwd~~--~~~~~~-~~~~~~~~~----~~~ 214 (353)
|++||+. +++.. ..+. .|...+..++|++ + .+++++ .++.|.+|++. +++... ......+.. +..
T Consensus 169 v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 248 (365)
T 1jof_A 169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP 248 (365)
T ss_dssp EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence 9999998 66543 3333 2356789999944 3 566555 47899999875 343100 000111111 111
Q ss_pred -----ceeeEEE-EcCCCCeEEeecCCC------cEEEeecc-ccccceee-eeeccccceeEEEEEE---cCcEEEEec
Q 018591 215 -----VSLNSVV-VSDDGKWVYGGGSDG------FVMGWEGN-VEIVRWKL-ACETKAHEMAVLCVCL---VGEFLCSGS 277 (353)
Q Consensus 215 -----~~v~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~-~~~~~~~~~~v~~~~~---~~~~l~~~~ 277 (353)
..+..++ |+|+|++|+++..+. .|.+|++. ++...... ..........-.++++ +|++|++++
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 0248899 999999988765432 79999986 34211100 0111111233456788 799999887
Q ss_pred C-CCeEEEEecCCC
Q 018591 278 A-DKSIGIWKREAF 290 (353)
Q Consensus 278 ~-dg~i~iw~~~~~ 290 (353)
. ++.|.+|+++..
T Consensus 329 ~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEGWLEIYRWKDE 342 (365)
T ss_dssp SSSCEEEEEEEETT
T ss_pred cCCCeEEEEEEchh
Confidence 6 489999998764
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=2e-14 Score=116.80 Aligned_cols=226 Identities=8% Similarity=0.003 Sum_probs=146.1
Q ss_pred CCCcEEEEeCCCceeeEEec-cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591 34 QGKDIIVWQQPDLRMFTKFG-HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ 110 (353)
Q Consensus 34 ~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
.++.|.+||..+++.+..+. .+-.....++++ ++.+++...++.|++|+.+...... ..+.......
T Consensus 67 ~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~-~~~~~~~~~g--------- 136 (329)
T 3fvz_A 67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPL-LILGRSMQPG--------- 136 (329)
T ss_dssp CSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCS-EEESBTTBCC---------
T ss_pred cCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEE-EEecccCCCC---------
Confidence 35789999999899887765 334567888887 7777888888999999986542111 1111000000
Q ss_pred ceeEeecccceeeeeecCCceEEEEEeC---CeEEEec-CCCcEEEEEcCCceeeeecccc----------CcceEEEEE
Q 018591 111 SNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGS-WDKTLKVWRVADLKCLESIKAH----------DDAVNGLVA 176 (353)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~----------~~~v~~i~~ 176 (353)
.-.++......+++++ .++++.+ .++.|++|| .+++.+..+... -.....+++
T Consensus 137 ------------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~ 203 (329)
T 3fvz_A 137 ------------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLAL 203 (329)
T ss_dssp ------------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEE
T ss_pred ------------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEE
Confidence 0003445678999987 4455554 589999999 567777666422 234788999
Q ss_pred e-C-C-eEEEEcCCCcEEEEeCCCCCcccccceeeee--ccCCceeeEEEEcC------CCCeEEeecCCCcEEEeeccc
Q 018591 177 S-K-G-IVYSASADGKIKAWGKELGKSHCHSLKGILE--GHKDVSLNSVVVSD------DGKWVYGGGSDGFVMGWEGNV 245 (353)
Q Consensus 177 ~-~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~ 245 (353)
. + + .+++...++.|++||..+++ ....+. .+...+ ..++++| +++..++...+..|++|+..+
T Consensus 204 d~~~g~l~v~d~~~~~I~~~~~~~G~-----~~~~~~~~~~~~~~-~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 204 VPHLDQLCVADRENGRIQCFKTDTKE-----FVREIKHASFGRNV-FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCC-----EEEEECCTTTTTCE-EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCc-----EEEEEeccccCCCc-ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 3 3 4 66666778899999998776 444442 233334 7888988 454444555566899999888
Q ss_pred cccceeeeeeccccceeEEEE--EEcCcEEEEecCCCeEEEEecCC
Q 018591 246 EIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 246 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg~i~iw~~~~ 289 (353)
+.....+. ....+......+ +++|.++++...++.|++|++..
T Consensus 278 g~~~~~~~-~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 278 GEIIDVFK-PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCEEEEEC-CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CeEEEEEc-CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 73222211 112333334444 44587888888999999999764
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=2.3e-15 Score=135.78 Aligned_cols=275 Identities=11% Similarity=0.042 Sum_probs=166.4
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCcee-----eEEEEEe--CCEEEEecCC---------Cc
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS-----VKAVVTV--GNKVFTAHQD---------SR 77 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~--~~~l~s~~~d---------g~ 77 (353)
.....+++|+ +++++++ ||+|++||+.+++....+.+|... ...+.|+ +++|+.++.+ +.
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3446688995 7788886 899999999999988888777532 2235666 8888888876 56
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~ 155 (353)
+.+||+.+++.. . +..|...+...+|+| +.|+.+ .++.|++||+
T Consensus 94 ~~~~d~~~~~~~------~---------------------------l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~ 139 (740)
T 4a5s_A 94 YDIYDLNKRQLI------T---------------------------EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIE 139 (740)
T ss_dssp EEEEETTTTEEC------C---------------------------SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESS
T ss_pred EEEEECCCCcEE------E---------------------------cccCCCcceeeEECCCCCEEEEE-ECCeEEEEEC
Confidence 779999887511 1 114667899999999 667666 5789999999
Q ss_pred CCceeeee-ccccCcce-----------------EEEEEeCC--eEEEEcCCC---------------------------
Q 018591 156 ADLKCLES-IKAHDDAV-----------------NGLVASKG--IVYSASADG--------------------------- 188 (353)
Q Consensus 156 ~~~~~~~~-~~~~~~~v-----------------~~i~~~~~--~l~~~~~dg--------------------------- 188 (353)
.+++..+. ..++...+ ..+.|+++ .|+.++.|.
T Consensus 140 ~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp 219 (740)
T 4a5s_A 140 PNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219 (740)
T ss_dssp TTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred CCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence 88765442 22222222 24778443 566654221
Q ss_pred ---------cEEEEeCCC---CCcccccceeeee-----ccCCceeeEEEEcCCCCeEEeec----CCCcEEEeeccccc
Q 018591 189 ---------KIKAWGKEL---GKSHCHSLKGILE-----GHKDVSLNSVVVSDDGKWVYGGG----SDGFVMGWEGNVEI 247 (353)
Q Consensus 189 ---------~i~iwd~~~---~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~ 247 (353)
+|++||+.+ ++.. ....... ++... +..++|+|||+.++... .+..|.+||+.++.
T Consensus 220 ~~G~~~~~~~l~v~d~~~~~~~~~~--~~~~l~~~~~~~~~~~~-~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 220 KAGAVNPTVKFFVVNTDSLSSVTNA--TSIQITAPASMLIGDHY-LCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp BTTSCCCEEEEEEEETTSCCSSSCC--CEEEECCCHHHHTSCEE-EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCcCcCCeeEEEEEECCCCCCCCcc--eEEEecCCccCCCCCeE-EEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 477788877 5200 0111111 23333 48999999999666543 33479999998874
Q ss_pred cceeee--eec--ccccee-------EEEEEEcCcEEE-Eec-CC--CeEEEEecCCCcceEEeccccCCCcCeEEEEee
Q 018591 248 VRWKLA--CET--KAHEMA-------VLCVCLVGEFLC-SGS-AD--KSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS 312 (353)
Q Consensus 248 ~~~~~~--~~~--~~~~~~-------v~~~~~~~~~l~-~~~-~d--g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~ 312 (353)
..+.+. ..+ ..+... -..++++|+.|+ ..+ .+ ..|++||..+++. ..+......+..+..
T Consensus 297 ~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~----~~lT~g~~~v~~~~~- 371 (740)
T 4a5s_A 297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC----TFITKGTWEVIGIEA- 371 (740)
T ss_dssp TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC----EESCCSSSCEEEEEE-
T ss_pred cccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce----EecccCCEEEEEEEE-
Confidence 110011 111 122211 235677888766 554 33 4688888876542 223333445665542
Q ss_pred cCCCCCCeEEEEccC----CCeEEEEEcC
Q 018591 313 PNAVGGGFLLYSGSL----DKSLRVWWVS 337 (353)
Q Consensus 313 ~~~~~~~~~l~s~~~----dg~i~iw~~~ 337 (353)
++ ++.++++++. .+...||.+.
T Consensus 372 ~d---~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 372 LT---SDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp EC---SSEEEEEESCGGGCTTCBEEEEEE
T ss_pred Ee---CCEEEEEEecCCCCCceeEEEEEE
Confidence 44 1556666655 2445555443
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=2.2e-14 Score=127.99 Aligned_cols=277 Identities=10% Similarity=0.038 Sum_probs=169.8
Q ss_pred eeeeeCccCceE---------EEEEC----CcE-EEEEeC-CCcEEEEeCC--C-ceeeEEecc-----CceeeEEEEEe
Q 018591 9 LAVLSGHVGSVS---------SLALC----GEF-ILSASQ-GKDIIVWQQP--D-LRMFTKFGH-----GDGSVKAVVTV 65 (353)
Q Consensus 9 ~~~l~~h~~~v~---------~~~~~----~~~-l~s~~~-dg~v~vwd~~--~-~~~~~~~~~-----~~~~v~~~~~~ 65 (353)
...+..|...+. ...|+ |+. |+.++. +..|.+|++. . ++ ...+.. |...+..++|+
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s 138 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL 138 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC
Confidence 455666665655 45443 777 665543 5677777765 2 44 444544 67788899998
Q ss_pred --CCEEEEecCC----------CcEEEEEccc------CccceeEEeeccccccceeeeecccceeEeecccceeeee-e
Q 018591 66 --GNKVFTAHQD----------SRIRVWKVSR------SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI-E 126 (353)
Q Consensus 66 --~~~l~s~~~d----------g~i~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 126 (353)
++.|+.++.+ ..|++||+++ +.. ..+. .
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------------------------~~l~~~ 185 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV---------------------------------RELSDD 185 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS---------------------------------EESSCS
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce---------------------------------eEEEec
Confidence 7889888876 5899999877 331 1111 2
Q ss_pred cCCceEEEEEeC--CeEEEecCC--------CcEEEEEcC-Cc---eeeeeccccCcceEEEEEeC-C-eEEEEcCCC--
Q 018591 127 HADSISCLTVYN--GLIYSGSWD--------KTLKVWRVA-DL---KCLESIKAHDDAVNGLVASK-G-IVYSASADG-- 188 (353)
Q Consensus 127 ~~~~i~~~~~~~--~~l~~~~~d--------g~v~iwd~~-~~---~~~~~~~~~~~~v~~i~~~~-~-~l~~~~~dg-- 188 (353)
+...+..+.|+| +.|+.++.+ ..|++||+. ++ +.......+...+..+.|++ + +++++..++
T Consensus 186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~ 265 (662)
T 3azo_A 186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWW 265 (662)
T ss_dssp CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCe
Confidence 334667788998 677776644 379999998 56 44444445578899999943 3 667777778
Q ss_pred cEEEEeCCCCCcccccceeeeeccCCc-------eeeEEEEcCCCCeEEeecCCCcEEEee--ccccccceeeeeecccc
Q 018591 189 KIKAWGKELGKSHCHSLKGILEGHKDV-------SLNSVVVSDDGKWVYGGGSDGFVMGWE--GNVEIVRWKLACETKAH 259 (353)
Q Consensus 189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~ 259 (353)
.|.+||..+++ .......+... .+..++|+|++++++++.. +.+++|. ...+. ...+..+
T Consensus 266 ~l~~~~~~~~~-----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-----~~~l~~~ 334 (662)
T 3azo_A 266 NLHRVDPATGA-----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-----LVDAAGP 334 (662)
T ss_dssp EEEEECTTTCC-----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-----EEECCSS
T ss_pred EEEEEECCCCc-----eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-----EEEecCC
Confidence 66677765554 22222222211 0367899999999999998 9999994 44441 2334455
Q ss_pred ceeEEEE-EEcCcEE--EEecCCC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591 260 EMAVLCV-CLVGEFL--CSGSADK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 260 ~~~v~~~-~~~~~~l--~~~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw 334 (353)
...+..+ +++++.+ ++++.+. .|.++|+.+++. ..+ ...+...+....+.+. ..+.+.+..+..|..|
T Consensus 335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~l--~~~~~~~~~~~~~~~~----~~~~~~~~dg~~i~~~ 407 (662)
T 3azo_A 335 WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA-RTI--GARHTDPVDPAYYPEP----QIRTFTAPDGREIHAH 407 (662)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE-EEE--ESCCCCSSCGGGSCCC----EEEEEECTTSCEEEEE
T ss_pred CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce-EEe--ecCCcccCCccccCcc----eEEEEEcCCCCEEEEE
Confidence 5666677 7776533 3444454 455556666542 122 2233333444444444 4455555445567776
Q ss_pred EcC
Q 018591 335 WVS 337 (353)
Q Consensus 335 ~~~ 337 (353)
-..
T Consensus 408 ~~~ 410 (662)
T 3azo_A 408 IYP 410 (662)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=4.5e-12 Score=101.48 Aligned_cols=275 Identities=8% Similarity=0.018 Sum_probs=174.3
Q ss_pred eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe--CCEEEEecCCCcEEEEEccc
Q 018591 11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR 85 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~ 85 (353)
.+..+...+.+++++ |+++++...++.|.+||.. ++..... ..+...+.+++++ +...++...++.|..|+.+
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 344566789999996 6666666667899999987 5543322 3345678889887 5666666667889999875
Q ss_pred CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee-
Q 018591 86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE- 162 (353)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~- 162 (353)
+. ..... ++ .....+.++.+.+ .++++...++.|..||. +++...
T Consensus 87 g~---~~~~~-~~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~ 134 (299)
T 2z2n_A 87 GI---IKEYT-LP---------------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY 134 (299)
T ss_dssp SC---EEEEE-CS---------------------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE
T ss_pred Cc---EEEEe-CC---------------------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe
Confidence 22 11111 10 1334677888887 44555556789999998 544432
Q ss_pred eccccCcceEEEEEe-CC-eEEEEcCCCcEEEEeCCCCCcccccceee-eeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 163 SIKAHDDAVNGLVAS-KG-IVYSASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 163 ~~~~~~~~v~~i~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
........+..+++. ++ .+++...++.|..||. +++ .... .......+ ..+++++++++.++...++.|.
T Consensus 135 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~-~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 135 ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD-----ITEFKIPTPASGP-VGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCE-EEEEECTTSSEEEEETTTTEEE
T ss_pred cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc-----EEEeeCCCCCCcc-eeEEECCCCCEEEEccCCceEE
Confidence 223344568889883 44 4444555789999998 554 2221 22223334 8999999998777777788999
Q ss_pred EeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG 317 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (353)
+||. ++... . .....+...+.++.. +|++.++...++.|..||.. ++ ...+ .+..+...+.++++ ++
T Consensus 208 ~~~~-~g~~~--~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~-~~~~~~~~~~~i~~-~~--- 276 (299)
T 2z2n_A 208 RITT-SGEIT--E-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEY-PIQIKSAEPHGICF-DG--- 276 (299)
T ss_dssp EECT-TCCEE--E-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEE-ECSSSSCCEEEEEE-CS---
T ss_pred EECC-CCcEE--E-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEE-eCCCCCCccceEEe-cC---
Confidence 9998 54211 1 112223344556655 46766666678899999983 32 2222 23345567999999 77
Q ss_pred CCeEEEEccCCCeEEEEEcCCC
Q 018591 318 GGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 318 ~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
+.+.++.+ .+.+..++.++.
T Consensus 277 -g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 277 -ETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp -SCEEEEET-TTEEEEEEEC--
T ss_pred -CCEEEEec-CCcEEEEEcCcc
Confidence 77777765 456777776654
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=3.4e-15 Score=124.45 Aligned_cols=255 Identities=9% Similarity=-0.061 Sum_probs=157.5
Q ss_pred EEEeCCCceeeEEeccCceeeEE-----EEEe--CCEEEEecC-CCc--EEEEEcccCccceeEEeeccccccceeeeec
Q 018591 39 IVWQQPDLRMFTKFGHGDGSVKA-----VVTV--GNKVFTAHQ-DSR--IRVWKVSRSSENVFRLVDTLPTTKDYLGKFM 108 (353)
Q Consensus 39 ~vwd~~~~~~~~~~~~~~~~v~~-----~~~~--~~~l~s~~~-dg~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (353)
..+|..++..+..+..|...... .+|+ +++|+.++. +|. |.+||+.+++. ...
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----~~l------------ 75 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----TQL------------ 75 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----EEC------------
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----EEe------------
Confidence 34577788888888877665555 5666 788888776 674 77778776641 111
Q ss_pred ccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE---eCC-eEE
Q 018591 109 KQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA---SKG-IVY 182 (353)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~---~~~-~l~ 182 (353)
..++...+....|+| +.|+.++.++.|++||+.+++....+..+...+....+ +++ .++
T Consensus 76 ---------------t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~ 140 (388)
T 3pe7_A 76 ---------------TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV 140 (388)
T ss_dssp ---------------CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred ---------------eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeec
Confidence 113333444567888 78999988899999999998877666655555544443 333 333
Q ss_pred E----------------------EcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCC----
Q 018591 183 S----------------------ASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSD---- 235 (353)
Q Consensus 183 ~----------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d---- 235 (353)
. ...+..|.+||+.+++ .. .+..+.... ..+.|+| +++.|+....+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----~~-~l~~~~~~~-~~~~~sp~dg~~l~~~~~~~~~~ 213 (388)
T 3pe7_A 141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----ST-VILQENQWL-GHPIYRPYDDSTVAFCHEGPHDL 213 (388)
T ss_dssp EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----EE-EEEEESSCE-EEEEEETTEEEEEEEEECSCTTT
T ss_pred cccccCcccccccccchhhhhhccCCcceEEEEECCCCc-----eE-EeecCCccc-cccEECCCCCCEEEEEEecCCCC
Confidence 2 2244789999999876 22 233333333 8899999 99988776653
Q ss_pred --CcEEEeeccccccceeeeeeccccc-eeEE--EEEEcCcEEEEecC-C----CeEEEEecCCCcceEEeccccCCCcC
Q 018591 236 --GFVMGWEGNVEIVRWKLACETKAHE-MAVL--CVCLVGEFLCSGSA-D----KSIGIWKREAFGKLCRVGAITGHEGP 305 (353)
Q Consensus 236 --g~i~i~d~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~h~~~ 305 (353)
..|.++|...... ........ ..+. .++++|+.|+..+. + +.|++||+.+++.. .+..+.++...
T Consensus 214 ~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~ 288 (388)
T 3pe7_A 214 VDARMWLINEDGTNM----RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR-QLTSMPACSHL 288 (388)
T ss_dssp SSCSEEEEETTSCCC----EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE-EEEEECCEEEE
T ss_pred CcceEEEEeCCCCce----EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE-EEEcCCCceee
Confidence 3677777765421 11111111 2333 45567886655332 2 24999999987632 33333331111
Q ss_pred ---eEEEEeecCCCCCCeEEEEc---------cCCCeEEEEEcCCCCC
Q 018591 306 ---VKCLQASPNAVGGGFLLYSG---------SLDKSLRVWWVSKQSS 341 (353)
Q Consensus 306 ---v~~~~~~~~~~~~~~~l~s~---------~~dg~i~iw~~~~~~~ 341 (353)
...+.|+|+ |+.|+.. ..+..|++||+.+++.
T Consensus 289 ~~~~~~~~~spd----g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 289 MSNYDGSLMVGD----GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EECTTSSEEEEE----ECCC------------CCCCEEEEEETTTTEE
T ss_pred eecCCCCeEccC----CCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 122379999 8877754 4567899999987654
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=4.3e-13 Score=115.90 Aligned_cols=271 Identities=12% Similarity=0.139 Sum_probs=179.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcc--cCccceeEEeecccccc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS--RSSENVFRLVDTLPTTK 101 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~--~~~~~~~~~~~~~~~~~ 101 (353)
+.++++...+++|.++|..+++.+..+.... .+..+.++ ++++++++.|+.|.+||+. +.+ .+..++
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-----~v~~i~--- 237 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-----TVAEIK--- 237 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-----EEEEEE---
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-----EeEEEe---
Confidence 4577777889999999999999998887543 45577787 8899999999999999995 433 222221
Q ss_pred ceeeeecccceeEeecccceeeeeecCCceEEEEEe----C--CeEEEe-cCCCcEEEEEcCCceeeeeccc--------
Q 018591 102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY----N--GLIYSG-SWDKTLKVWRVADLKCLESIKA-------- 166 (353)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~-------- 166 (353)
.......+.++ | ++++++ ..++.|.++|..+.+.+..+..
T Consensus 238 -------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~ 292 (567)
T 1qks_A 238 -------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 292 (567)
T ss_dssp -------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred -------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccc
Confidence 11234578888 4 455554 4569999999999888877642
Q ss_pred --cCc-ceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEE
Q 018591 167 --HDD-AVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVM 239 (353)
Q Consensus 167 --~~~-~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~ 239 (353)
|.. .+..+..++ ..++....+|.|.++|..+.+.. ....+. .... ...+.|+|++++++++. .++.|.
T Consensus 293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~---~v~~i~-~~~~-~~d~~~~pdgr~~~va~~~sn~V~ 367 (567)
T 1qks_A 293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL---KTTEIS-AERF-LHDGGLDGSHRYFITAANARNKLV 367 (567)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE---EEEEEE-CCSS-EEEEEECTTSCEEEEEEGGGTEEE
T ss_pred cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc---eeeeee-cccc-ccCceECCCCCEEEEEeCCCCeEE
Confidence 112 566676633 26667777899999998775410 111111 1222 37889999999886654 678999
Q ss_pred Eeeccccccceeeee-eccccce-eEEEEEEc-CcEEEEec-CCCeEEEEecCCCcc----eEEeccccCCCcCeEEEEe
Q 018591 240 GWEGNVEIVRWKLAC-ETKAHEM-AVLCVCLV-GEFLCSGS-ADKSIGIWKREAFGK----LCRVGAITGHEGPVKCLQA 311 (353)
Q Consensus 240 i~d~~~~~~~~~~~~-~~~~~~~-~v~~~~~~-~~~l~~~~-~dg~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~ 311 (353)
++|..+++....... ....|.. ...-+.++ +...+++. .++.|.++|..+.+. +..+..+......-..+..
T Consensus 368 ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~ 447 (567)
T 1qks_A 368 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT 447 (567)
T ss_dssp EEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred EEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe
Confidence 999998853333222 1223432 22224555 44444543 568999999987221 2244555544333345778
Q ss_pred ecCCCCCCeEEEEccC-------CCeEEEEEcCCC
Q 018591 312 SPNAVGGGFLLYSGSL-------DKSLRVWWVSKQ 339 (353)
Q Consensus 312 ~~~~~~~~~~l~s~~~-------dg~i~iw~~~~~ 339 (353)
+|+ +++|.+... .++|.++|+.+.
T Consensus 448 ~p~----~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 448 HPN----SQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTT----CSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCC----CCeEEEecCCCCCcccCceEEEEECCcc
Confidence 999 888887653 359999999876
No 179
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.68 E-value=2.2e-13 Score=112.95 Aligned_cols=284 Identities=12% Similarity=0.070 Sum_probs=178.0
Q ss_pred CCCCceeeeeeCcc---------Cce-EEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEe
Q 018591 3 CKSHRSLAVLSGHV---------GSV-SSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTA 72 (353)
Q Consensus 3 ~~~~~~~~~l~~h~---------~~v-~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 72 (353)
.++++.+..+.... ..+ ..+..++..++.++.++.|..+|..+++.+................++.++.+
T Consensus 70 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~ 149 (376)
T 3q7m_A 70 ADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIH 149 (376)
T ss_dssp TTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEE
T ss_pred ccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEE
Confidence 34666665555421 222 34455678888899999999999999999887765433333334457889999
Q ss_pred cCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEE
Q 018591 73 HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKV 152 (353)
Q Consensus 73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~i 152 (353)
+.++.|..+|..+++......... . ........ ......+.+++++.++.+..
T Consensus 150 ~~~g~l~~~d~~tG~~~W~~~~~~-----~------------------~~~~~~~~----~~~~~~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 150 TSNGQLQALNEADGAVKWTVNLDM-----P------------------SLSLRGES----APTTAFGAAVVGGDNGRVSA 202 (376)
T ss_dssp CTTSEEEEEETTTCCEEEEEECCC----------------------------CCCC----CCEEETTEEEECCTTTEEEE
T ss_pred cCCCeEEEEECCCCcEEEEEeCCC-----C------------------ceeecCCC----CcEEECCEEEEEcCCCEEEE
Confidence 999999999998876221111000 0 00000011 11223477888999999999
Q ss_pred EEcCCceeeeeccccCcc----------e-EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591 153 WRVADLKCLESIKAHDDA----------V-NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV 221 (353)
Q Consensus 153 wd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 221 (353)
+|..+++.+......... + ......++.++.++.++.+..+|.++++ ....... ... ..+.
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~-----~~w~~~~--~~~-~~~~ 274 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ-----IMWKREL--GSV-NDFI 274 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-----EEEEECC--CCE-EEEE
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-----EEeeccC--CCC-CCce
Confidence 999999887766432110 1 1122356788888999999999999887 3322221 112 3333
Q ss_pred EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591 222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301 (353)
Q Consensus 222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 301 (353)
. ++..++.++.++.+..+|..+++..+.... . ...........+..|++++.+|.|+.+|..+++.... ...
T Consensus 275 ~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~-~--~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~---~~~ 346 (376)
T 3q7m_A 275 V--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD-L--LHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQ---QKV 346 (376)
T ss_dssp E--ETTEEEEEETTCCEEEEETTTCCEEEEECT-T--TTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE---EEC
T ss_pred E--ECCEEEEEcCCCeEEEEECCCCcEEEeecc-c--CCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEE---Eec
Confidence 3 356788888899999999998865544321 1 1111222233467888999999999999999874332 222
Q ss_pred CCcCeEE-EEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 302 HEGPVKC-LQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 302 h~~~v~~-~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
....+.+ .... +..|+.++.||.|..|+
T Consensus 347 ~~~~~~~~~~~~------~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 347 DSSGFQTEPVAA------DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CTTCBCSCCEEE------TTEEEEEBTTSCEEEEE
T ss_pred CCCcceeCCEEE------CCEEEEEeCCCEEEEEe
Confidence 2222222 2222 34778888999999886
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=1.2e-13 Score=113.14 Aligned_cols=252 Identities=11% Similarity=0.040 Sum_probs=156.5
Q ss_pred CceEEEEECCcEEEEEe---------CCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---C--cEEE
Q 018591 17 GSVSSLALCGEFILSAS---------QGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---S--RIRV 80 (353)
Q Consensus 17 ~~v~~~~~~~~~l~s~~---------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g--~i~~ 80 (353)
..+...+++|++++... .++.|.+||+.+++.... ..+..+.|+ +++|+.++.+ + .|.+
T Consensus 15 ~~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 15 AYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp CEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EEcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 45666667888776642 267899999988875433 467778887 7788877654 3 3677
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC------------
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW------------ 146 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~------------ 146 (353)
|++.+++... +..+.. +..+.|+| +.|+.++.
T Consensus 90 ~~~~~g~~~~---------------------------------l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 90 ADLETLSSKK---------------------------------ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp EETTTTEEEE---------------------------------EEEESE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred EECCCCceEE---------------------------------EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 7776654111 012223 78889988 56666653
Q ss_pred ---------------CCcEEEEEcCCceeeeeccccCcceEEEEEeCC-eEEEEcCCC-------cEEEEeCCCCCcccc
Q 018591 147 ---------------DKTLKVWRVADLKCLESIKAHDDAVNGLVASKG-IVYSASADG-------KIKAWGKELGKSHCH 203 (353)
Q Consensus 147 ---------------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~l~~~~~dg-------~i~iwd~~~~~~~~~ 203 (353)
...|.+||+.+++.+..+.. . .+..+.|+++ .++++..++ ...+|.+.+++
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~---- 209 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK---- 209 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE----
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc----
Confidence 25799999988877455544 3 7788889444 555554432 34454444333
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCC--------CcEEEeeccccccceeeeeeccccceeEEE-EEE-cCcEE
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD--------GFVMGWEGNVEIVRWKLACETKAHEMAVLC-VCL-VGEFL 273 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~-~~~~l 273 (353)
. ..+..+ ... .. ++|+|++|+.++.+ ..|.+|| ++ ........+...+.. +.+ ++ ++
T Consensus 210 -~-~~l~~~-~~~-~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----~~~~l~~~~~~~~~~~~~~sdg-~~ 276 (347)
T 2gop_A 210 -E-EKMFEK-VSF-YA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GK----EVMGILDEVDRGVGQAKIKDGK-VY 276 (347)
T ss_dssp -E-EEEEEE-ESE-EE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SS----CEEESSTTCCSEEEEEEEETTE-EE
T ss_pred -e-EEeccC-cce-ee--ECCCCCEEEEEEccccCCccccceEEEEC--CC----ceEeccccCCcccCCccEEcCc-EE
Confidence 2 222222 222 33 39999988776644 3677777 33 122222334444543 445 45 88
Q ss_pred EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE-EEEEcC
Q 018591 274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL-RVWWVS 337 (353)
Q Consensus 274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i-~iw~~~ 337 (353)
++++.++.+++| +.+++ . ..+..+...|.+++|+| .++++++.++.. .+|.+.
T Consensus 277 ~~~~~~~~~~l~-~~~g~-~---~~~~~~~~~v~~~~~s~------~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGE-I---KPIAKGRHWIMGFDVDE------IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEETTEEEEE-EESSS-E---EEEECSSSEEEEEEESS------SEEEEEECSSSCCEEEEES
T ss_pred EEEecCCcEEEE-EcCCc-e---EEEecCCCeEEeeeeeC------cEEEEEcCCCChHHheEeC
Confidence 889999999999 87543 2 22334577899999987 266777666654 777776
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=2.7e-13 Score=110.00 Aligned_cols=238 Identities=10% Similarity=0.054 Sum_probs=153.4
Q ss_pred CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEec-CCCcEEEEEcccCccceeEE
Q 018591 17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAH-QDSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~-~dg~i~~w~~~~~~~~~~~~ 93 (353)
.....++++ +++.++...++.|.+||..+++.+..+.. ......++++ +..++.+. .++.|.+||..+.+ .
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~-----~ 117 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE-----I 117 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE-----E
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe-----E
Confidence 346778887 55556666679999999999999888854 3567788884 44666665 78999999998775 2
Q ss_pred eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec--CCCcEEEEEcCCceeeeeccccCcce
Q 018591 94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS--WDKTLKVWRVADLKCLESIKAHDDAV 171 (353)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v 171 (353)
...++.... .+.......+++..+.++++. .++.|.++|+.+++.+..+.. ....
T Consensus 118 ~~~i~~g~~----------------------~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p 174 (328)
T 3dsm_A 118 TGYIECPDM----------------------DMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQP 174 (328)
T ss_dssp EEEEECTTC----------------------CTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCB
T ss_pred EEEEEcCCc----------------------cccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCc
Confidence 222111000 001113334555555665555 488999999999988877754 3344
Q ss_pred EEEEE-eCCeEEEEcC-C----------CcEEEEeCCCCCcccccceeeeeccC-CceeeEEEEcCCCCeEEeecCCCcE
Q 018591 172 NGLVA-SKGIVYSASA-D----------GKIKAWGKELGKSHCHSLKGILEGHK-DVSLNSVVVSDDGKWVYGGGSDGFV 238 (353)
Q Consensus 172 ~~i~~-~~~~l~~~~~-d----------g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i 238 (353)
..+.+ +++.++.++. + +.|.++|..+.+ ....+.... ..+ ..++++|+++.++++.. .|
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-----v~~~~~~~~g~~p-~~la~~~d~~~lyv~~~--~v 246 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-----VEKQFKFKLGDWP-SEVQLNGTRDTLYWINN--DI 246 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-----EEEEEECCTTCCC-EEEEECTTSCEEEEESS--SE
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe-----EEEEEecCCCCCc-eeEEEecCCCEEEEEcc--EE
Confidence 67777 4454444443 3 689999998876 444443322 234 89999999999888765 89
Q ss_pred EEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEe----cCCCeEEEEecCCCcc
Q 018591 239 MGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSG----SADKSIGIWKREAFGK 292 (353)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~----~~dg~i~iw~~~~~~~ 292 (353)
.+||..++................-.++.++ +.++++. ..++.|.+||.. ++.
T Consensus 247 ~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 247 WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 9999987643211111110122233445553 5566666 678999999988 663
No 182
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.67 E-value=3.2e-13 Score=111.94 Aligned_cols=272 Identities=12% Similarity=0.062 Sum_probs=177.9
Q ss_pred EEECCcEEEEEeCCCcEEEEeCCCceeeEEeccC----------ceeeEEEEEeCCEEEEecCCCcEEEEEcccCcccee
Q 018591 22 LALCGEFILSASQGKDIIVWQQPDLRMFTKFGHG----------DGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVF 91 (353)
Q Consensus 22 ~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~ 91 (353)
....+..++.++.++.|..+|..+++.+..+... ......+...++.++.++.++.|..+|.++++....
T Consensus 49 p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 3445778888888999999999999988776552 122234455688999999999999999988763211
Q ss_pred EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591 92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV 171 (353)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v 171 (353)
.. .. ...........+.+++++.++.|..+|..+++.+..........
T Consensus 129 ~~---~~-----------------------------~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 129 TK---VA-----------------------------GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp EE---CS-----------------------------SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred Ee---CC-----------------------------CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 11 00 00011112335788889999999999999999887765432211
Q ss_pred -----EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc----------eeeEEEEcCCCCeEEeecCCC
Q 018591 172 -----NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV----------SLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 172 -----~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~dg 236 (353)
......++.++.++.++.+..+|..+++ ........... ....... .+..++.++.++
T Consensus 177 ~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~-----~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g 249 (376)
T 3q7m_A 177 SLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQ-----MIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNG 249 (376)
T ss_dssp --CCCCCCEEETTEEEECCTTTEEEEEETTTCC-----EEEEEECCC-----------CCCCCCEE--ETTEEEEECTTS
T ss_pred eecCCCCcEEECCEEEEEcCCCEEEEEECCCCc-----EEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCc
Confidence 2233457788889999999999999887 32222211100 0001111 245778888899
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV 316 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (353)
.+..+|..+++..+.... ........++..++.++.++.|..+|..+++.......+ ....+......
T Consensus 250 ~l~~~d~~tG~~~w~~~~------~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~---- 317 (376)
T 3q7m_A 250 NLTALDLRSGQIMWKREL------GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDL--LHRLLTSPVLY---- 317 (376)
T ss_dssp CEEEEETTTCCEEEEECC------CCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTT--TTSCCCCCEEE----
T ss_pred EEEEEECCCCcEEeeccC------CCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeeccc--CCCcccCCEEE----
Confidence 999999998865544321 123345556788888889999999999998854333211 11223333333
Q ss_pred CCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 317 GGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 317 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
+..|+.++.+|.|.++|..+++.+....
T Consensus 318 --~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 318 --NGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp --TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 4478888899999999999988765443
No 183
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.66 E-value=2.4e-14 Score=129.20 Aligned_cols=306 Identities=9% Similarity=0.021 Sum_probs=171.3
Q ss_pred CCCCceeeeeeCccCce-----EEEEEC--CcEEEEEeCC---------CcEEEEeCCCceeeEEeccCceeeEEEEEe-
Q 018591 3 CKSHRSLAVLSGHVGSV-----SSLALC--GEFILSASQG---------KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV- 65 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v-----~~~~~~--~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~- 65 (353)
..+++....+.+|.... ..++|+ |++|+.++.+ +.+.+||+.+++... +..|...+...+|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SP 121 (740)
T 4a5s_A 43 AEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSP 121 (740)
T ss_dssp TTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECS
T ss_pred CCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECC
Confidence 45677777788887532 336665 8899998876 566799999988654 55667788999998
Q ss_pred -CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC---------CceEEEE
Q 018591 66 -GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA---------DSISCLT 135 (353)
Q Consensus 66 -~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~ 135 (353)
|+.|+.+. ++.|++|++.++...... ...... .++.++. +....+.
T Consensus 122 dG~~la~~~-~~~i~~~~~~~~~~~~lt----~~g~~~-------------------~~~~g~~~~v~~ee~~~~~~~~~ 177 (740)
T 4a5s_A 122 VGHKLAYVW-NNDIYVKIEPNLPSYRIT----WTGKED-------------------IIYNGITDWVYEEEVFSAYSALW 177 (740)
T ss_dssp STTCEEEEE-TTEEEEESSTTSCCEECC----SCCBTT-------------------TEEESBCCHHHHHHTSSSSBCEE
T ss_pred CCCEEEEEE-CCeEEEEECCCCceEEEc----CCCCcc-------------------ceecCcccccccchhcCCCcceE
Confidence 78888874 679999999876532111 000000 0000111 1111234
Q ss_pred EeC--CeEEEecC----------------------------------C--CcEEEEEcCC---ce--eeeecc------c
Q 018591 136 VYN--GLIYSGSW----------------------------------D--KTLKVWRVAD---LK--CLESIK------A 166 (353)
Q Consensus 136 ~~~--~~l~~~~~----------------------------------d--g~v~iwd~~~---~~--~~~~~~------~ 166 (353)
|+| +.|+.++. + ..|++||+.+ ++ ....+. +
T Consensus 178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~ 257 (740)
T 4a5s_A 178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI 257 (740)
T ss_dssp ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence 444 33333221 1 2588899988 63 222332 3
Q ss_pred cCcceEEEEE-eCCe-EEEEc----CCCcEEEEeCCCCCcc--cccceee-eeccCCce----eeEEEEcCCCCeEE-ee
Q 018591 167 HDDAVNGLVA-SKGI-VYSAS----ADGKIKAWGKELGKSH--CHSLKGI-LEGHKDVS----LNSVVVSDDGKWVY-GG 232 (353)
Q Consensus 167 ~~~~v~~i~~-~~~~-l~~~~----~dg~i~iwd~~~~~~~--~~~~~~~-~~~~~~~~----v~~~~~~~~~~~l~-~~ 232 (353)
|...+..++| +++. ++... .+..|.+||+.+++.. +...... ...+...+ .....|+|||+.++ ..
T Consensus 258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~ 337 (740)
T 4a5s_A 258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII 337 (740)
T ss_dssp SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEE
T ss_pred CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEE
Confidence 7778999999 4453 33332 2346999999887510 0001111 13333322 13678999999776 44
Q ss_pred c-CCC--cEEEeeccccccceeeeeeccccceeEEE-EEEcCcEEE-EecC----CC--eEEEEecCCCcceEEec-ccc
Q 018591 233 G-SDG--FVMGWEGNVEIVRWKLACETKAHEMAVLC-VCLVGEFLC-SGSA----DK--SIGIWKREAFGKLCRVG-AIT 300 (353)
Q Consensus 233 ~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~-~~~~----dg--~i~iw~~~~~~~~~~~~-~~~ 300 (353)
+ .+| .|.+||...+. ... +......+.. +.++++.|+ ++.. .+ .|+..++..++...++. .+.
T Consensus 338 s~~~G~~~l~~~~~~~~~----~~~-lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~ 412 (740)
T 4a5s_A 338 SNEEGYRHICYFQIDKKD----CTF-ITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELN 412 (740)
T ss_dssp ECTTSCEEEEEEETTCSS----CEE-SCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTS
T ss_pred EcCCCceEEEEEECCCCc----eEe-cccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccC
Confidence 4 444 57778877652 221 2222223332 346665444 4443 23 44444554433211221 112
Q ss_pred CCCcCeEEEEeecCCCCCCeEEEEccCC---CeEEEEEcCCCCCc
Q 018591 301 GHEGPVKCLQASPNAVGGGFLLYSGSLD---KSLRVWWVSKQSST 342 (353)
Q Consensus 301 ~h~~~v~~~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~ 342 (353)
+.........|+|+ +++++..... ..+.+++..+++..
T Consensus 413 ~~~~~~~~~~~S~d----g~~~~~~~s~~~~p~~~l~~~~~~~~~ 453 (740)
T 4a5s_A 413 PERCQYYSVSFSKE----AKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (740)
T ss_dssp TTTBCBEEEEECTT----SSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred CCCCceEEEEECCC----CCEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 23467889999999 7766544332 46788887766543
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.66 E-value=3.1e-13 Score=108.14 Aligned_cols=239 Identities=12% Similarity=0.055 Sum_probs=149.9
Q ss_pred ceeeEEeccCceeeEEEEEe--CC-EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccccee
Q 018591 46 LRMFTKFGHGDGSVKAVVTV--GN-KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR 122 (353)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (353)
+..+..+..+.....+++|+ ++ .++++..++.|..|+.+++ .. ..
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~---~~---------------------------- 64 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS---PE---------------------------- 64 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---EE----------------------------
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---EE----------------------------
Confidence 34445555555667788888 65 6788888999999998765 11 11
Q ss_pred eeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeecccc----CcceEEEEE-eCCe-EEE----Ec-----
Q 018591 123 LWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAH----DDAVNGLVA-SKGI-VYS----AS----- 185 (353)
Q Consensus 123 ~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~i~~-~~~~-l~~----~~----- 185 (353)
..+...+.++++++ .++++...++.|.+||..+++........ ...+..+++ +++. +++ ++
T Consensus 65 --~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~ 142 (296)
T 3e5z_A 65 --MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEE 142 (296)
T ss_dssp --ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGG
T ss_pred --ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccc
Confidence 13445688999988 45555555689999998777654433221 234567888 4444 444 32
Q ss_pred --------CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc-cccc-ceeeeee
Q 018591 186 --------ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN-VEIV-RWKLACE 255 (353)
Q Consensus 186 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-~~~~~~~ 255 (353)
..+.|..++.. ++ ...+..+...+ ..++|+|+++.+++.+.++.|.+|++. .+.. .....
T Consensus 143 ~~~~~~~~~~~~l~~~~~~-g~------~~~~~~~~~~~-~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~-- 212 (296)
T 3e5z_A 143 GYGGEMELPGRWVFRLAPD-GT------LSAPIRDRVKP-NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH-- 212 (296)
T ss_dssp SSCCCCCSSSCEEEEECTT-SC------EEEEECCCSSE-EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE--
T ss_pred cccccccCCCcEEEEECCC-CC------EEEeecCCCCC-ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE--
Confidence 13456666655 33 22333444444 899999999988888888999999987 3321 00111
Q ss_pred ccccceeE--EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee-cCCCCCCeEEEEccCCCeEE
Q 018591 256 TKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS-PNAVGGGFLLYSGSLDKSLR 332 (353)
Q Consensus 256 ~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~l~s~~~dg~i~ 332 (353)
+..+...+ .++.++|++.++. ++.|.+||.. ++ .+..+..+.. +++++|. |+ ++.|++++.++ +.
T Consensus 213 ~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~---~~~~~~~~~~-~~~~~f~~~d----~~~L~v~t~~~-l~ 280 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD---ELGRVLTPQT-TSNLCFGGPE----GRTLYMTVSTE-FW 280 (296)
T ss_dssp ECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC---EEEEEECSSC-CCEEEEESTT----SCEEEEEETTE-EE
T ss_pred eeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC---EEEEEECCCC-ceeEEEECCC----CCEEEEEcCCe-EE
Confidence 11122222 3444557766655 7889999986 45 3444555666 9999994 77 88888887764 44
Q ss_pred EEEcCCCC
Q 018591 333 VWWVSKQS 340 (353)
Q Consensus 333 iw~~~~~~ 340 (353)
-++..+.+
T Consensus 281 ~~~~~~~~ 288 (296)
T 3e5z_A 281 SIETNVRG 288 (296)
T ss_dssp EEECSCCB
T ss_pred EEEccccc
Confidence 44554443
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=1.9e-13 Score=107.83 Aligned_cols=236 Identities=9% Similarity=0.027 Sum_probs=148.7
Q ss_pred eeEEEEEe--CCEEE-EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE
Q 018591 58 SVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL 134 (353)
Q Consensus 58 ~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 134 (353)
...+++++ ++.++ +...++.|.+|+..+.... . .. ..+...+.++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~---~~--------------------------~~~~~~p~~i 72 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---V---LP--------------------------FNGLYQPQGL 72 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---E---CC--------------------------CCSCCSCCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---e---Ee--------------------------eCCcCCccee
Confidence 56677776 55455 4367788998886544310 0 00 0222356678
Q ss_pred EEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe-CC-eEEEEcCCCcEEEEeCCCCCcccccceeeeec
Q 018591 135 TVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS-KG-IVYSASADGKIKAWGKELGKSHCHSLKGILEG 211 (353)
Q Consensus 135 ~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 211 (353)
++++ +.++.+..++.|..||................+.++++. ++ .+++...++.|.+|+..+.. .......
T Consensus 73 ~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-----~~~~~~~ 147 (270)
T 1rwi_B 73 AVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-----QTVLPFT 147 (270)
T ss_dssp EECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-----CEECCCC
T ss_pred EECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-----eEeeccc
Confidence 8887 445555448899999986554332222223568899983 44 55555667899999765543 1111112
Q ss_pred cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCC
Q 018591 212 HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 212 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~ 289 (353)
....+ ..++++++++++++...++.|.+||....... .....+......+.. +|.++++...++.|.+|+...
T Consensus 148 ~~~~p-~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 148 GLNDP-DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV----VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp SCCSC-CCEEECTTCCEEEEEGGGTEEEEECTTTCCEE----ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred cCCCc-eeEEEeCCCCEEEEECCCCEEEEEecCCCceE----eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 22234 88999999997777777889999998765321 111112233445555 477777777788999999876
Q ss_pred CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
... ......+...+.+++++|+ |+++++...++.|+++++...+..
T Consensus 223 ~~~---~~~~~~~~~~p~~i~~~~~----g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 223 TTS---TVLPFTGLNTPLAVAVDSD----RTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp SCC---EECCCCSCSCEEEEEECTT----CCEEEEEGGGTEEEEECCCGGGSC
T ss_pred Ccc---eeeccCCCCCceeEEECCC----CCEEEEECCCCEEEEEcCCCcccc
Confidence 432 1112233457899999999 889999999999999998876543
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.62 E-value=7e-12 Score=103.13 Aligned_cols=281 Identities=9% Similarity=-0.003 Sum_probs=172.5
Q ss_pred CCcEEEEEeC--CC---cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec----------CCCcEEEEEcccCc
Q 018591 25 CGEFILSASQ--GK---DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH----------QDSRIRVWKVSRSS 87 (353)
Q Consensus 25 ~~~~l~s~~~--dg---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~~w~~~~~~ 87 (353)
++++++.... .. .|.++|..+++.+..+.....+ .+.++ +++++.+. .++.|.+||..+.+
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~ 108 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence 4666666553 22 8899999999999888765444 66666 78888775 36789999997665
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeee
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLES 163 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~ 163 (353)
.+..++... ..+. .+...-..+.++| ++|+++.. ++.|.++| .+++.+..
T Consensus 109 -----~~~~i~~~~------------------~~~~--~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 109 -----PIADIELPD------------------APRF--DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred -----EEEEEECCC------------------cccc--ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 222221100 0000 0112234678888 77777764 57899999 99988877
Q ss_pred -ccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccce-eeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEe
Q 018591 164 -IKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLK-GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGW 241 (353)
Q Consensus 164 -~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 241 (353)
+.. ...+......+..+++.+.||.+.++|. +++....... ..+ ...........+.+++..++..+.++.+.+.
T Consensus 163 ~i~~-~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vi 239 (373)
T 2mad_H 163 LLSS-PTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQA 239 (373)
T ss_pred EcCC-CceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEE
Confidence 643 2222211123446778888999999999 6652100000 001 1111122334566666555544577889999
Q ss_pred eccccccceeeeeec----------cccceeEEEEEEcCcEEEEecC----------CCeEEEEecCCCcceEEeccccC
Q 018591 242 EGNVEIVRWKLACET----------KAHEMAVLCVCLVGEFLCSGSA----------DKSIGIWKREAFGKLCRVGAITG 301 (353)
Q Consensus 242 d~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~ 301 (353)
|+............. .........++++++.+++... ++.|.++|..+.+. +..+.
T Consensus 240 d~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v---v~~i~- 315 (373)
T 2mad_H 240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT---SSQIS- 315 (373)
T ss_pred eccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE---EEEEE-
Confidence 986542111000000 0111223556777777666543 36899999998874 33343
Q ss_pred CCcCeEEEEeecCCCCCCe-EEEEcc-CCCeEEEEEcCCCCCccc
Q 018591 302 HEGPVKCLQASPNAVGGGF-LLYSGS-LDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 302 h~~~v~~~~~~~~~~~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~ 344 (353)
-......++|+|| ++ +++++. .++.|.++|+.+.+.+.+
T Consensus 316 ~g~~p~~i~~s~D----g~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 316 LGHDVDAISVAQD----GGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCCCcCeEEECCC----CCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 2335899999999 88 777777 589999999999988876
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=2.3e-13 Score=107.26 Aligned_cols=210 Identities=14% Similarity=0.037 Sum_probs=142.4
Q ss_pred CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC-CceEEEEEeC--CeEE
Q 018591 66 GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA-DSISCLTVYN--GLIY 142 (353)
Q Consensus 66 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~l~ 142 (353)
++.|++++.|+.|.+||.++++ .+-.++ .+. ..+.++.+.| +.++
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~-----~~w~~~---------------------------~~~~~~~~~~~~~pdG~ilv 52 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKE-----IVWEYP---------------------------LEKGWECNSVAATKAGEILF 52 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTE-----EEEEEE---------------------------CCTTCCCCEEEECTTSCEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCe-----EEEEeC---------------------------CCccCCCcCeEECCCCCEEE
Confidence 5788999999999999997876 222221 122 3567788888 4555
Q ss_pred EecCCCcEEEEEcCCceeeeeccccC-cceEEEEE-eCC-eEEEEcC-CCcEEEEeCCCCCcccccceeeee------cc
Q 018591 143 SGSWDKTLKVWRVADLKCLESIKAHD-DAVNGLVA-SKG-IVYSASA-DGKIKAWGKELGKSHCHSLKGILE------GH 212 (353)
Q Consensus 143 ~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~-~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~------~~ 212 (353)
+.++.|..||. +++.+.++..+. ..+.++.+ +++ .+++.+. ++.+..+|. +++ ....+. .+
T Consensus 53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk-----~l~~~~~~~~~~~~ 123 (276)
T 3no2_A 53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGE-----VLSKTEFETGIERP 123 (276)
T ss_dssp --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSC-----EEEEEEECCSCSSG
T ss_pred --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCC-----EEEEEeccCCCCcc
Confidence 45788999998 899998887643 46777777 333 6666665 777888876 444 222221 11
Q ss_pred CCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591 213 KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 213 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
...+ ..+++.++|+++++...++.|..||.. ++..++.... . ........+++++++++..++.|..+|..+++.
T Consensus 124 ~~~~-~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~--~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 124 HAQF-RQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS--G-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp GGSC-SCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS--S-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred cccc-cCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC--C-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 1222 567889999999999999999999998 7555544332 1 111233345688999999899999999998885
Q ss_pred eEEeccc--cC-CCcCeEEEEeecCCCCCCeEEEEc
Q 018591 293 LCRVGAI--TG-HEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 293 ~~~~~~~--~~-h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
...+... .+ ....+..+...++ |.++++.
T Consensus 199 ~w~~~~~~~~~~~l~~~~~~~~~~~----G~i~v~~ 230 (276)
T 3no2_A 199 VRRVNANDIEGVQLFFVAQLFPLQN----GGLYICN 230 (276)
T ss_dssp EEEEEGGGSBSCCCSEEEEEEECTT----SCEEEEE
T ss_pred EEEecCCCCCCccccccccceEcCC----CCEEEEe
Confidence 5444321 11 1223778888888 8888776
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=1.2e-11 Score=106.85 Aligned_cols=309 Identities=12% Similarity=0.055 Sum_probs=192.7
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCC--CceeeEEeccCceeeEEEEEe------CCEEEEe
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQP--DLRMFTKFGHGDGSVKAVVTV------GNKVFTA 72 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~------~~~l~s~ 72 (353)
..+++.+.++.... .+..+.|+ |+++++++.|+.|.+||+. +++.+..+..... ...++++ +++++++
T Consensus 184 ~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~ 261 (567)
T 1qks_A 184 GSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAG 261 (567)
T ss_dssp TTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEE
T ss_pred CCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEE
Confidence 45677777776443 56688886 8899999999999999995 8888888876444 3566665 6677766
Q ss_pred c-CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCC-ceEEEEEeC---CeEEEecCC
Q 018591 73 H-QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD-SISCLTVYN---GLIYSGSWD 147 (353)
Q Consensus 73 ~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~---~~l~~~~~d 147 (353)
. .++++.++|..+.+ .+..++...... . ....|.. .+..+..++ ..++....+
T Consensus 262 n~~~~~v~ViD~~t~~-----~~~~i~~~~~~~----~-------------~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 262 AYWPPQYVIMDGETLE-----PKKIQSTRGMTY----D-------------EQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp EEETTEEEEEETTTCC-----EEEEEECCEECT----T-------------TCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred EccCCeEEEEECCCCc-----EEEEEecccccc----c-------------cccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 5 45899999987765 222222110000 0 0001222 455666665 456666778
Q ss_pred CcEEEEEcCCcee--eeeccccCcceEEEEEeC-C-e-EEEEcCCCcEEEEeCCCCCcccccceeeeec-----cCCcee
Q 018591 148 KTLKVWRVADLKC--LESIKAHDDAVNGLVASK-G-I-VYSASADGKIKAWGKELGKSHCHSLKGILEG-----HKDVSL 217 (353)
Q Consensus 148 g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~-~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~v 217 (353)
|.|.++|..+.+. +..+. .......+.|++ + + +++...++.|.++|..+++ +...... |.+..
T Consensus 320 g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k-----l~~~i~vgg~~Phpg~g- 392 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-----LVAIEDTGGQTPHPGRG- 392 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-----EEEEEECSSSSBCCTTC-
T ss_pred CeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-----EEEEEeccCcCCCCccc-
Confidence 9999999876432 22222 234566778843 3 4 4455578899999999886 3333322 22211
Q ss_pred eEEEEcCCCCeE-Eeec-CCCcEEEeecccccc---ceeeeeeccccc--eeEEEEEEcCcEEEEecC-------CCeEE
Q 018591 218 NSVVVSDDGKWV-YGGG-SDGFVMGWEGNVEIV---RWKLACETKAHE--MAVLCVCLVGEFLCSGSA-------DKSIG 283 (353)
Q Consensus 218 ~~~~~~~~~~~l-~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~-------dg~i~ 283 (353)
.. .++|++..+ +++. .++.|.++|...... .++....+.... .......++++++.+... .+.|.
T Consensus 393 ~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~ 471 (567)
T 1qks_A 393 AN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA 471 (567)
T ss_dssp EE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred ee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence 11 257875444 4443 568999999887321 134444444322 223456778888887653 45999
Q ss_pred EEecCCC-----cce-EEe--cc---ccCCCcCeEEEEeecCCCCCCeEEEEcc-----CCCeEEEEEcCCCCCcccccC
Q 018591 284 IWKREAF-----GKL-CRV--GA---ITGHEGPVKCLQASPNAVGGGFLLYSGS-----LDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 284 iw~~~~~-----~~~-~~~--~~---~~~h~~~v~~~~~~~~~~~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~ 347 (353)
++|+.+. ... ..+ .+ +..-...+..+.|+|+ |+.+..+. .++.|.|+|.++.+.......
T Consensus 472 v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 472 VFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD----GTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT----SSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC----CCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 9999876 211 122 11 1112346899999999 77666552 378999999999987776654
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=6.6e-13 Score=118.95 Aligned_cols=271 Identities=13% Similarity=0.022 Sum_probs=165.2
Q ss_pred EEECCcEEEEEeCCC---c--EEEEeCCCceeeEEec------cCceeeEEEEEe--CCEEE-----EecCCCcEEEEEc
Q 018591 22 LALCGEFILSASQGK---D--IIVWQQPDLRMFTKFG------HGDGSVKAVVTV--GNKVF-----TAHQDSRIRVWKV 83 (353)
Q Consensus 22 ~~~~~~~l~s~~~dg---~--v~vwd~~~~~~~~~~~------~~~~~v~~~~~~--~~~l~-----s~~~dg~i~~w~~ 83 (353)
...+|++++....++ . |.+.+...++....+. +|...+..+.|+ +++|+ .|+.+.+|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 345677777665543 3 3444444554433332 355678888998 77877 4555678999999
Q ss_pred ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCc------------
Q 018591 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKT------------ 149 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~------------ 149 (353)
++++... ...+ .. .....++|+| +.|+.++.|..
T Consensus 155 ~tg~~~~---~~~~----------------------------~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~ 202 (695)
T 2bkl_A 155 DSGEWSK---VDVI----------------------------EG-GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT 202 (695)
T ss_dssp TTCCBCS---SCCB----------------------------SC-CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred CCCCCcC---Cccc----------------------------Cc-ccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence 9876210 0000 00 1115688998 67888877765
Q ss_pred -EEEEEcCCce----eeeeccccCcceEEEEEeCC--eEEEEcCCC----cEEEEeCCCCCcccccceeeeeccCCceee
Q 018591 150 -LKVWRVADLK----CLESIKAHDDAVNGLVASKG--IVYSASADG----KIKAWGKELGKSHCHSLKGILEGHKDVSLN 218 (353)
Q Consensus 150 -v~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (353)
|++|++.++. .+.....+...+..+.++++ .++..+.++ .|.+||..+++ . ..+..+.... .
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-----~-~~l~~~~~~~-~ 275 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-----F-RLLVKGVGAK-Y 275 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-----C-EEEEECSSCC-E
T ss_pred EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-----e-EEeecCCCce-E
Confidence 9999998765 33344445567888899443 666665555 67777655443 2 2333333333 4
Q ss_pred EEEEcCCCCeEEeec---CCCcEEEeeccccccc-eeeeeecccc-ceeEEEEEEc-CcEEEEecCCCeEEEEecC-CCc
Q 018591 219 SVVVSDDGKWVYGGG---SDGFVMGWEGNVEIVR-WKLACETKAH-EMAVLCVCLV-GEFLCSGSADKSIGIWKRE-AFG 291 (353)
Q Consensus 219 ~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~-~~~~~~~~~~-~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~-~~~ 291 (353)
...+ +++.+++... .++.|.+||+.++... +.. ....+ ...+..+.+. +.++++...|+..++|.+. +++
T Consensus 276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKE--IVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEE--EECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeE--EecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC
Confidence 4455 5566444444 2578999998775321 111 11222 3345555554 6678888889988888665 333
Q ss_pred ceEEeccccCC-CcCeEEEEeecCCCCCCeEEE----EccCCCeEEEEEcCCCCC
Q 018591 292 KLCRVGAITGH-EGPVKCLQASPNAVGGGFLLY----SGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 292 ~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~l~----s~~~dg~i~iw~~~~~~~ 341 (353)
....+..+ .+.+..+.++|+ ++.++ +....++|++||+.+++.
T Consensus 353 ---~~~~l~~~~~~~v~~~~~s~d----~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 353 ---PVRTVQLPGVGAASNLMGLED----LDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ---EEEECCCSSSSEECCCBSCTT----CSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ---eeEEecCCCCeEEEEeecCCC----CCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 23334433 567888899998 76666 444568999999987653
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=1.9e-12 Score=103.54 Aligned_cols=242 Identities=11% Similarity=0.045 Sum_probs=154.1
Q ss_pred CCceeeeeeCccCceEEEEEC--Cc-EEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 5 SHRSLAVLSGHVGSVSSLALC--GE-FILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
.+..+..+..+.....+++|+ ++ +++++..++.|..||..++ ...+..+...+.+++++ ++.+++...++.|.
T Consensus 16 ~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 16 AGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred CCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 345566777777888999996 65 7888888999999998877 56666677788999997 66666666678999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEE----ec--------
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYS----GS-------- 145 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~----~~-------- 145 (353)
+||..+++.... ...... .....+..+++++ .++++ |+
T Consensus 94 ~~d~~~g~~~~~--~~~~~~--------------------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~ 145 (296)
T 3e5z_A 94 RQREPGGEWESI--ADSFEG--------------------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG 145 (296)
T ss_dssp EECSTTCCEEEE--ECEETT--------------------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred EEcCCCCcEEEE--eeccCC--------------------------CCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence 999876652111 000000 1223456788888 44444 33
Q ss_pred -----CCCcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEEEEcCCCcEEEEeCC-CCCcccccceeeeeccCCcee
Q 018591 146 -----WDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVYSASADGKIKAWGKE-LGKSHCHSLKGILEGHKDVSL 217 (353)
Q Consensus 146 -----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v 217 (353)
..+.|..++.. ++. ..+..+......+++++ + .+++.+.++.|.+||+. ++... .....+..+...+
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~--~~~~~~~~~~~~p- 220 (296)
T 3e5z_A 146 GEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE--YQGVHFTVEPGKT- 220 (296)
T ss_dssp CCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE--EEEEEECCSSSCC-
T ss_pred ccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc--CCCeEeeCCCCCC-
Confidence 13456666654 433 33445566778999943 3 56777788999999987 33310 0022222233334
Q ss_pred eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE---cCcEEEEecCCCeEEEEecCCC
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL---VGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
..++++++|++.++. ++.|.+|+.... ....+..+.. +.++.+ +++.|++++.++ +.-++..+.
T Consensus 221 ~~i~~d~~G~l~v~~--~~~v~~~~~~g~-----~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 221 DGLRVDAGGLIWASA--GDGVHVLTPDGD-----ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp CSEEEBTTSCEEEEE--TTEEEEECTTSC-----EEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred CeEEECCCCCEEEEc--CCeEEEECCCCC-----EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 789999999866666 788999998733 2223333333 444444 467788887764 555565543
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.60 E-value=9.2e-11 Score=93.83 Aligned_cols=269 Identities=10% Similarity=0.072 Sum_probs=169.3
Q ss_pred CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeE-EeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcc
Q 018591 14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFT-KFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSE 88 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~ 88 (353)
.....+.+++++ |++.++...++.|.+||.. ++... .+..+...+.+++++ +...++...++.|..+|.. +..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 445688999996 7777766678999999987 55443 223334678888887 5555555557889999876 431
Q ss_pred ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee-ecc
Q 018591 89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE-SIK 165 (353)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~-~~~ 165 (353)
. .. ..+ .....+.++++.+ .++++...++.|..+|.. ++... .+.
T Consensus 95 ~---~~-~~~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 95 T---EY-PLP---------------------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp E---EE-ECS---------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred E---Ee-cCC---------------------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence 1 10 000 1234577888887 455555557889999987 55442 233
Q ss_pred ccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceee-eeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591 166 AHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 166 ~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 242 (353)
.....+.++++ +++ .+++...++.|..+|. +++ .... .......+ ..+++++++++.++....+.|.+|+
T Consensus 143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~-~~i~~d~~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 143 NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK-----LEEYPLPTNAAAP-VGITSGNDGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCE-EEEEECTTSSEEEEETTTTEEEEEC
T ss_pred CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc-----EEEeeCCCCCCCc-ceEEECCCCCEEEEccCCCEEEEEc
Confidence 33467788888 434 4445555788999998 444 2221 12223334 8999999998777777778899999
Q ss_pred ccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591 243 GNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF 320 (353)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 320 (353)
.... .. ..........+.++.. +|++.++...++.|..|+.. ++. ... .+......+.+++++++ |.
T Consensus 216 ~~g~-~~---~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-~~~-~~~~~~~~~~~i~~~~~----g~ 284 (300)
T 2qc5_A 216 TTGE-IS---EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTI-QEY-QLQTENAEPHGITFGKD----GS 284 (300)
T ss_dssp TTCC-EE---EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-EEE-ECCSTTCCCCCEEECTT----SC
T ss_pred CCCc-EE---EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcE-EEE-ECCccCCccceeEeCCC----CC
Confidence 8322 11 1112222334555555 47766666677899999984 332 111 22334456889999998 88
Q ss_pred EEEEccCCCeEEEEEc
Q 018591 321 LLYSGSLDKSLRVWWV 336 (353)
Q Consensus 321 ~l~s~~~dg~i~iw~~ 336 (353)
+.++.. . .|..++.
T Consensus 285 l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 285 VWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEECS-S-EEEEEEE
T ss_pred EEEEcc-C-ceEEeCC
Confidence 777665 4 6666664
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=1.4e-12 Score=102.84 Aligned_cols=231 Identities=10% Similarity=0.025 Sum_probs=145.9
Q ss_pred ceEEEEEC--CcEEE-EEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591 18 SVSSLALC--GEFIL-SASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR 92 (353)
Q Consensus 18 ~v~~~~~~--~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~ 92 (353)
...+++++ |++++ +...++.|.+||..+.........+...+.+++++ ++.+++.. ++.|.+||.+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-- 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-- 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee--
Confidence 67889996 67666 44678999999976554332222333467788887 55444444 8899999976653110
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcc
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA 170 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 170 (353)
+.. .....+..+++++ .++++...++.|.+|+..+.............
T Consensus 102 ----~~~--------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 151 (270)
T 1rwi_B 102 ----LPF--------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLND 151 (270)
T ss_dssp ----CCC--------------------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCS
T ss_pred ----eec--------------------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCC
Confidence 000 1224577888987 45555566789999986654433322233346
Q ss_pred eEEEEEe-CC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc
Q 018591 171 VNGLVAS-KG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV 248 (353)
Q Consensus 171 v~~i~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 248 (353)
+.++++. ++ .+++...++.|.+||..... ...........+ ..++++++|.++++...++.|.+|+......
T Consensus 152 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~p-~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 152 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-----QVVLPFTDITAP-WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CCCEEECTTCCEEEEEGGGTEEEEECTTTCC-----EEECCCSSCCSE-EEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred ceeEEEeCCCCEEEEECCCCEEEEEecCCCc-----eEeecccCCCCc-eEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 7788883 34 55555667899999987665 222222222344 8999999998888877888999999876521
Q ss_pred ceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc
Q 018591 249 RWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 249 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
. .....+...+.++.+ +|+++++...++.|+++++...+
T Consensus 226 ~----~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 226 T----VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp E----ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred e----eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 1 111122233445544 58888888899999999987644
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=5.9e-12 Score=102.51 Aligned_cols=207 Identities=13% Similarity=0.082 Sum_probs=134.0
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC----Cc
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD----SR 77 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d----g~ 77 (353)
++....+.++...+.+++|+ +++++++..++.|.+||..+++.......+...+.+++++ ++.+++...+ +.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence 34556677777788999996 7777788889999999998887766554556789999997 5566665555 58
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecC-------CCc
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSW-------DKT 149 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~-------dg~ 149 (353)
|.+||.+++.... .+... .+...+.++.+++ ..++.++. .+.
T Consensus 114 i~~~d~~~~~~~~--~~~~~----------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 114 IFAATENGDNLQD--IIEDL----------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp EEEECTTSCSCEE--EECSS----------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred EEEEeCCCCEEEE--EEccC----------------------------ccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 9999987665210 11000 2335688899998 44444443 255
Q ss_pred EEEEEcCCceeeeeccccCcceEEEEEeC-C-eE-EEEcCCCcEEEEeCCCC-Cccc-c--cceeeeeccCCceeeEEEE
Q 018591 150 LKVWRVADLKCLESIKAHDDAVNGLVASK-G-IV-YSASADGKIKAWGKELG-KSHC-H--SLKGILEGHKDVSLNSVVV 222 (353)
Q Consensus 150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l-~~~~~dg~i~iwd~~~~-~~~~-~--~~~~~~~~~~~~~v~~~~~ 222 (353)
|..+|..+++... +......+..+++++ + .+ ++.+.++.|.+||.... .... . .....+.++ .. +..+++
T Consensus 164 l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~-~~~i~~ 240 (333)
T 2dg1_A 164 VYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EG-PDSCCI 240 (333)
T ss_dssp EEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SE-EEEEEE
T ss_pred EEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CC-CCceEE
Confidence 6666665544333 222334578888843 3 34 45566889999998642 2100 0 000011111 23 388999
Q ss_pred cCCCCeEEeecCCCcEEEeeccc
Q 018591 223 SDDGKWVYGGGSDGFVMGWEGNV 245 (353)
Q Consensus 223 ~~~~~~l~~~~~dg~i~i~d~~~ 245 (353)
++++++.++...++.|.+||...
T Consensus 241 d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 241 DSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp BTTCCEEEEEETTTEEEEECTTS
T ss_pred CCCCCEEEEEcCCCEEEEECCCC
Confidence 99999888877788999999853
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=2.3e-13 Score=107.25 Aligned_cols=191 Identities=12% Similarity=-0.002 Sum_probs=138.7
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeeccccC-cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHD-DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS 216 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 216 (353)
+.|++++.|+.|.+||.++++.+.++..+. ..+.++.+ +++.++. +.++.|..||. +++ ....+..+....
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~-----~~W~~~~~~~~~ 78 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGR-----ELWNIAAPAGCE 78 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSC-----EEEEEECCTTCE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCC-----EEEEEcCCCCcc
Confidence 678999999999999998999999998765 46788888 4444444 45788999999 676 555565543334
Q ss_pred eeEEEEcCCCCeEEeecC-CCcEEEeeccccccceeeeeec--cccc--eeEEEEEEcCcEEEEecCCCeEEEEecCCCc
Q 018591 217 LNSVVVSDDGKWVYGGGS-DGFVMGWEGNVEIVRWKLACET--KAHE--MAVLCVCLVGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--~~~~--~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
+.++.+.|+|+++++.+. ++.+..+|. .++..++..... ..+. ....+..++|+++++...++.|..||.+ ++
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 588999999999999877 777888876 343333322111 1111 1122445579999999999999999988 77
Q ss_pred ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 292 KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 292 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
. +.++... ..+.++...++ ++++++++.++.|..+|..+++.+.+..
T Consensus 157 ~---~w~~~~~-~~~~~~~~~~~----g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 157 L---LNSVKLS-GTPFSSAFLDN----GDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp E---EEEEECS-SCCCEEEECTT----SCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred E---EEEEECC-CCccceeEcCC----CCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 4 3334333 35667788888 9999999999999999999888866553
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=3.6e-12 Score=114.52 Aligned_cols=242 Identities=7% Similarity=-0.062 Sum_probs=152.2
Q ss_pred CccCceEEEEEC--CcEEEEEeCCC-----cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCc-------
Q 018591 14 GHVGSVSSLALC--GEFILSASQGK-----DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSR------- 77 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~------- 77 (353)
+|...+..++|+ |++||.++.++ .|++||+.+++....... ...+..++|+ ++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 354568889996 88888766543 899999999988764322 2236678887 778888877765
Q ss_pred ---------EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC
Q 018591 78 ---------IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW 146 (353)
Q Consensus 78 ---------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~ 146 (353)
|++|++.++..... .+...+ .|...+..+.|+| ++|+.++.
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~-~v~~~~---------------------------~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDI-LCAEFP---------------------------DEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCE-EEECCT---------------------------TCTTCEEEEEECTTSCEEEEEEE
T ss_pred ccccCCCCEEEEEECCCCcccce-EEeccC---------------------------CCCeEEEEEEEcCCCCEEEEEEE
Confidence 99999876642111 111100 2445577889998 66666554
Q ss_pred -----CCcEEEEEcCC------ce-eeeeccccCcceEEEEE-eCCeEEEEcC----CCcEEEEeCCCCCcccccceeee
Q 018591 147 -----DKTLKVWRVAD------LK-CLESIKAHDDAVNGLVA-SKGIVYSASA----DGKIKAWGKELGKSHCHSLKGIL 209 (353)
Q Consensus 147 -----dg~v~iwd~~~------~~-~~~~~~~~~~~v~~i~~-~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~ 209 (353)
+..|++||+.+ +. ....+..+...+..... .++.++..+. .+.|.+||+.++... ....+
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l 329 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVL 329 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEE
T ss_pred ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cceec
Confidence 67899999976 43 34555555555554323 4455554443 236999999876410 11233
Q ss_pred eccCC-ceeeEEEEcCCCCeEEeecCCCc--EEEeeccccccceeeeeeccccceeEEEEEE--cCcEEE-Ee---cCCC
Q 018591 210 EGHKD-VSLNSVVVSDDGKWVYGGGSDGF--VMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLC-SG---SADK 280 (353)
Q Consensus 210 ~~~~~-~~v~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-~~---~~dg 280 (353)
..+.. ..+..++|++++.++++...++. |.+|++.++. ....+..+...+..+++ ++..++ +. ...+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~----~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 405 (710)
T 2xdw_A 330 VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA----LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPG 405 (710)
T ss_dssp ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC----EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCC
T ss_pred cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC----EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCC
Confidence 33333 34578899888888888888885 5556664552 22333344556666655 455544 22 2457
Q ss_pred eEEEEecCCCc
Q 018591 281 SIGIWKREAFG 291 (353)
Q Consensus 281 ~i~iw~~~~~~ 291 (353)
.|+.||+.+++
T Consensus 406 ~i~~~d~~tg~ 416 (710)
T 2xdw_A 406 IIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTSSS
T ss_pred EEEEEECCCCc
Confidence 89999998765
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=9.2e-12 Score=111.90 Aligned_cols=268 Identities=11% Similarity=0.005 Sum_probs=163.0
Q ss_pred ECCcEEEEEeCC-C----cEEEEeCCCceeeEEe------ccCceeeEEEEEe--CCEEEEecCCC-----cEEEEEccc
Q 018591 24 LCGEFILSASQG-K----DIIVWQQPDLRMFTKF------GHGDGSVKAVVTV--GNKVFTAHQDS-----RIRVWKVSR 85 (353)
Q Consensus 24 ~~~~~l~s~~~d-g----~v~vwd~~~~~~~~~~------~~~~~~v~~~~~~--~~~l~s~~~dg-----~i~~w~~~~ 85 (353)
.+|++++-...+ + .+.+.+...++....+ ..|...+..+.|+ +++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 567666544432 2 3444454445443332 2244568888888 77887655433 899999988
Q ss_pred CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCc--------------
Q 018591 86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKT-------------- 149 (353)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~-------------- 149 (353)
++..... + .+ ..+..++|+| +.|+.++.++.
T Consensus 161 g~~~~~~----~----------------------------~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (710)
T 2xdw_A 161 AKELPDV----L----------------------------ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (710)
T ss_dssp TEEEEEE----E----------------------------EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred CCCCccc----c----------------------------cC-cccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence 7621110 0 11 1255788998 67888777765
Q ss_pred --EEEEEcCCce----eeeeccccCcceEEEEEeCC--eEEEEcC-----CCcEEEEeCCC------CCcccccceeeee
Q 018591 150 --LKVWRVADLK----CLESIKAHDDAVNGLVASKG--IVYSASA-----DGKIKAWGKEL------GKSHCHSLKGILE 210 (353)
Q Consensus 150 --v~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~--~l~~~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~ 210 (353)
|++|++.+++ .+.....+...+..+.|+++ .++..+. +..|++||+.+ +.. ....+.
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~l~ 283 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL----KWVKLI 283 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC----CCEEEE
T ss_pred CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc----ceEEee
Confidence 9999998765 22233334556778888443 5555543 56899999976 320 123344
Q ss_pred ccCCceeeEEEEcCCCCeEEeecCC----CcEEEeecccccc-ceeeeeeccccc--eeEEEEEEc--CcEEEEecCCCe
Q 018591 211 GHKDVSLNSVVVSDDGKWVYGGGSD----GFVMGWEGNVEIV-RWKLACETKAHE--MAVLCVCLV--GEFLCSGSADKS 281 (353)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~-~~~~~~~~~~~~--~~v~~~~~~--~~~l~~~~~dg~ 281 (353)
.+.... .. .|+|+|+.|+..+.. +.|.+||+.++.. .++. +..+. ..+..+.+. +.++++...++.
T Consensus 284 ~~~~~~-~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~ 358 (710)
T 2xdw_A 284 DNFEGE-YD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV---LVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (710)
T ss_dssp CSSSSC-EE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred CCCCcE-EE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee---ccCCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence 444433 33 588888877765543 3699999877531 1111 12222 245555553 567777777875
Q ss_pred --EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE-Ec---cCCCeEEEEEcCCCC
Q 018591 282 --IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY-SG---SLDKSLRVWWVSKQS 340 (353)
Q Consensus 282 --i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~-s~---~~dg~i~iw~~~~~~ 340 (353)
|++|++.+++ .+..+..+.+.+..+.++|+ +..++ +. ...++|..||+.+++
T Consensus 359 ~~l~~~~~~~g~---~~~~l~~~~~~v~~~~~s~d----~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 359 NTLQLHDLATGA---LLKIFPLEVGSVVGYSGQKK----DTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEETTTCC---EEEEECCCSSEEEEEECCTT----CSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEECCCCC---EEEecCCCCceEEEEecCCC----CCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 5666765665 33445556778999999998 65544 32 345799999998876
No 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=1.2e-12 Score=107.23 Aligned_cols=182 Identities=10% Similarity=0.004 Sum_probs=118.6
Q ss_pred ceEEEEEeC--CeEEEecCC---C--cEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEEEEcC--------------
Q 018591 130 SISCLTVYN--GLIYSGSWD---K--TLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVYSASA-------------- 186 (353)
Q Consensus 130 ~i~~~~~~~--~~l~~~~~d---g--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~~~~-------------- 186 (353)
.+..+.|+| +.|+..+.+ + .|.+||+.+++....... .. +..+.|++ + .|+.++.
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 467789998 567766543 2 488889888776555443 34 89999943 3 5666553
Q ss_pred -------------CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-------cEEEeecccc
Q 018591 187 -------------DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-------FVMGWEGNVE 246 (353)
Q Consensus 187 -------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~ 246 (353)
...|.+||+.+++ ....+.. . . +..++|+|++ +++++..++ ...+|.+.++
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~-----~~~~l~~-~-~-~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~ 208 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEE-----VIEEFEK-P-R-FSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG 208 (347)
T ss_dssp CCC---------CEEEEEEEETTTTE-----EEEEEEE-E-T-TCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred ceeecCcccccCccceEEEEECCCCe-----EEeeecC-C-C-cccccCCCCe-EEEEEecccccccccccccEEEeCCC
Confidence 2568999998776 3122332 2 3 4889999999 777775542 3455554433
Q ss_pred ccceeeeeeccccceeEEEEEEcCcEEEEecCC--------CeEEEEecCCCcceEEeccccCCCcCeEE-EEeecCCCC
Q 018591 247 IVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD--------KSIGIWKREAFGKLCRVGAITGHEGPVKC-LQASPNAVG 317 (353)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~ 317 (353)
. ... +..+ ..+..++++|++|+.++.+ ..|.+|| +++ ......+|...+.. +.|+ +
T Consensus 209 ~--~~~---l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~~~~~~~~~~~s-d--- 273 (347)
T 2gop_A 209 K--EEK---MFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE---VMGILDEVDRGVGQAKIKD-G--- 273 (347)
T ss_dssp E--EEE---EEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC---EEESSTTCCSEEEEEEEET-T---
T ss_pred c--eEE---eccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc---eEeccccCCcccCCccEEc-C---
Confidence 1 111 1122 4445558899988776644 4688888 443 22234456777886 8999 8
Q ss_pred CCeEEEEccCCCeEEEEEcCCCC
Q 018591 318 GGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 318 ~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+ ++++++.++.+++| +.+++
T Consensus 274 -g-~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 274 -K-VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp -E-EEEEEEETTEEEEE-EESSS
T ss_pred -c-EEEEEecCCcEEEE-EcCCc
Confidence 8 99999999999999 87443
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=4.8e-13 Score=119.86 Aligned_cols=241 Identities=11% Similarity=-0.060 Sum_probs=149.0
Q ss_pred CccCceEEEEEC--CcEEE-----EEeCCCcEEEEeCCCceeeEEeccCceee--EEEEEe--CCEEEEecCCCc-----
Q 018591 14 GHVGSVSSLALC--GEFIL-----SASQGKDIIVWQQPDLRMFTKFGHGDGSV--KAVVTV--GNKVFTAHQDSR----- 77 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~-----s~~~dg~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~--~~~l~s~~~dg~----- 77 (353)
+|...+.+++|+ |++|| .|+.+..|++||+.+++.+. ..+...+ ..++|+ ++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 466678999996 88888 45556789999999988651 1111222 567887 778888887765
Q ss_pred --------EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC
Q 018591 78 --------IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD 147 (353)
Q Consensus 78 --------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d 147 (353)
|++|++.++..... ++... ..+...+..+.|++ ++|+.++.+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~-lv~~~---------------------------~~~~~~~~~~~~SpDG~~l~~~~~~ 247 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDT-VVHER---------------------------TGDPTTFLQSDLSRDGKYLFVYILR 247 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCE-EEECC---------------------------CCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred ccCCCCCEEEEEECCCCchhce-EEEec---------------------------CCCCEEEEEEEECCCCCEEEEEEeC
Confidence 99999987652211 11111 03556788899999 677776655
Q ss_pred C----cEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcC----CCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591 148 K----TLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASA----DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS 219 (353)
Q Consensus 148 g----~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (353)
+ .|.+||..+++. ..+..+...+....++++.++..+. ++.|.+||+.++... ........+....+..
T Consensus 248 ~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~l~~ 324 (695)
T 2bkl_A 248 GWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARA--SWKEIVPEDSSASLLS 324 (695)
T ss_dssp TTTEEEEEEECTTCSSC-EEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGG--GCEEEECCCSSCEEEE
T ss_pred CCCceEEEEEcCCCCce-EEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCcc--CCeEEecCCCCCeEEE
Confidence 5 677777655543 3344455555555564443444332 578999999776411 0122333332444578
Q ss_pred EEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc-ceeEEEEE--EcCcEEE----EecCCCeEEEEecCCCc
Q 018591 220 VVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVC--LVGEFLC----SGSADKSIGIWKREAFG 291 (353)
Q Consensus 220 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~--~~~~~l~----~~~~dg~i~iw~~~~~~ 291 (353)
++++ ++.++++...|+..++|.+.... .....+..+ ...+..++ ++++.++ +....++|++||+.+++
T Consensus 325 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g---~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 325 VSIV-GGHLSLEYLKDATSEVRVATLKG---KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEEETTC---CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEE-CCEEEEEEEECCEEEEEEEeCCC---CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8888 67788888889988888665211 112222222 34444444 3566555 23345789999998865
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=5.3e-12 Score=102.57 Aligned_cols=283 Identities=10% Similarity=0.057 Sum_probs=175.6
Q ss_pred CCcEEEEEeC-----CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec----------CCCcEEEEEcccCc
Q 018591 25 CGEFILSASQ-----GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH----------QDSRIRVWKVSRSS 87 (353)
Q Consensus 25 ~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~~w~~~~~~ 87 (353)
+++.++.... ++.|.+.|..+++.+..+.....+ . +.++ +++++.+. .++.|.+||..+.+
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 4666666654 689999999999999988765555 3 7776 77777665 36789999998876
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeee
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLES 163 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~ 163 (353)
.+..++.... .+. .....-..+.++| ++++++.. ++.|.++|+.+++.+.+
T Consensus 121 -----v~~~I~v~~g------------------~r~--~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~t 175 (386)
T 3sjl_D 121 -----PTADIELPDA------------------PRF--LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 175 (386)
T ss_dssp -----EEEEEEETTC------------------CCC--CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred -----EEEEEECCCc------------------ccc--ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 3222211000 000 0011233577887 66666653 68999999999999988
Q ss_pred ccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCC-CCcccccceeeeeccCCceeeEEEEc-CCCCeEEeecCCCcEE
Q 018591 164 IKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKEL-GKSHCHSLKGILEGHKDVSLNSVVVS-DDGKWVYGGGSDGFVM 239 (353)
Q Consensus 164 ~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~ 239 (353)
+.... . ...+ ....+++.+.||++.+.++.. ++.. ......+............|. ++|++++ .+.+|.+.
T Consensus 176 I~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~ 250 (386)
T 3sjl_D 176 LDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIH 250 (386)
T ss_dssp EECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEE
T ss_pred EECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEE-EeecceeccccccccccceeEcCCCcEEE-EeCCCEEE
Confidence 85422 1 2223 344777888999999999976 4411 000011111111221234554 6776555 44478999
Q ss_pred Eeeccccccceeeeee----------ccccceeEEEEEEcCcEEEEecC----------CCeEEEEecCCCcceEEeccc
Q 018591 240 GWEGNVEIVRWKLACE----------TKAHEMAVLCVCLVGEFLCSGSA----------DKSIGIWKREAFGKLCRVGAI 299 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~ 299 (353)
+.|............. ..........+.++++.++.... .+.|.++|+.+.+....+
T Consensus 251 v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i--- 327 (386)
T 3sjl_D 251 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF--- 327 (386)
T ss_dssp EEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE---
T ss_pred EEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE---
Confidence 9999765321111000 01112234566677776666532 367999999998844333
Q ss_pred cCCCcCeEEEEeecCCCCCCe-EEEE-ccCCCeEEEEEcCCCCCcccccC
Q 018591 300 TGHEGPVKCLQASPNAVGGGF-LLYS-GSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 300 ~~h~~~v~~~~~~~~~~~~~~-~l~s-~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
.- ...+.+|+++|| ++ +|++ ...++.|.++|..+++.+.+.+.
T Consensus 328 ~v-g~~~~~lavs~D----~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 328 EM-GHEIDSINVSQD----EKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EE-EEEECEEEECSS----SSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EC-CCCcceEEECCC----CCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 21 236889999999 75 5555 45689999999999998876653
No 200
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.55 E-value=1.8e-13 Score=114.33 Aligned_cols=249 Identities=12% Similarity=-0.029 Sum_probs=148.0
Q ss_pred EEEeCCCceeeEEeccCcee-----eEEEEEe--CCEEEEecC-C--CcEEEEEcccCccceeEEeeccccccceeeeec
Q 018591 39 IVWQQPDLRMFTKFGHGDGS-----VKAVVTV--GNKVFTAHQ-D--SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFM 108 (353)
Q Consensus 39 ~vwd~~~~~~~~~~~~~~~~-----v~~~~~~--~~~l~s~~~-d--g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (353)
...|..+++.+..+..+... +..++|+ +++|+.... + ..|.+||+.+++.. . +.
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---~---l~---------- 76 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---Q---LT---------- 76 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---E---CC----------
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---E---ee----------
Confidence 34477888877777655333 5566676 777766543 2 36777887765411 1 00
Q ss_pred ccceeEeecccceeeeeecCCc-eEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEE---EE-------
Q 018591 109 KQSNYVQTRRHHKRLWIEHADS-ISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNG---LV------- 175 (353)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~---i~------- 175 (353)
.+... ...+.|+| +.|+.++.++.|++||+.+++.......+...... ++
T Consensus 77 -----------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 139 (396)
T 3c5m_A 77 -----------------EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL 139 (396)
T ss_dssp -----------------CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred -----------------cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence 11112 22357787 68888888889999999887765555433332211 21
Q ss_pred ---------EeC--CeEEEE-----cCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCC---
Q 018591 176 ---------ASK--GIVYSA-----SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSD--- 235 (353)
Q Consensus 176 ---------~~~--~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d--- 235 (353)
+++ +.++.. ..+..|.+||+.+++ ..... .+... +..+.|+| +++.|+..+.+
T Consensus 140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-----~~~~~-~~~~~-~~~~~~sp~dg~~l~~~~~~~~~ 212 (396)
T 3c5m_A 140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-----LEVIH-QDTAW-LGHPIYRPFDDSTVGFCHEGPHD 212 (396)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-----EEEEE-EESSC-EEEEEEETTEEEEEEEEECSCSS
T ss_pred ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc-----EEeec-cCCcc-cccceECCCCCCEEEEEecCCCC
Confidence 111 122211 355689999998876 33222 23333 48899999 78766665443
Q ss_pred ---CcEEEeeccccccceeeeeecccc-ceeE--EEEEEcCcEEEEecCC-----CeEEEEecCCCcceEEeccccCCCc
Q 018591 236 ---GFVMGWEGNVEIVRWKLACETKAH-EMAV--LCVCLVGEFLCSGSAD-----KSIGIWKREAFGKLCRVGAITGHEG 304 (353)
Q Consensus 236 ---g~i~i~d~~~~~~~~~~~~~~~~~-~~~v--~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~h~~ 304 (353)
..|.+||+..+.. ... .... ...+ ..++++|++|+.++.+ +.|++||+.+++.. .+..+.+
T Consensus 213 ~~~~~l~~~d~~~~~~--~~l--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~--- 284 (396)
T 3c5m_A 213 LVDARMWLVNEDGSNV--RKI--KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE-EVMVMPP--- 284 (396)
T ss_dssp SCSCCCEEEETTSCCC--EES--SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE-EEEECCS---
T ss_pred CCCceEEEEECCCCce--eEe--eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE-EeeeCCC---
Confidence 3688888765521 111 1111 2234 3455568877766543 55999999876532 2322222
Q ss_pred CeEEEEeec-CCCCCCeEEEEcc----------------CCCeEEEEEcCCCCC
Q 018591 305 PVKCLQASP-NAVGGGFLLYSGS----------------LDKSLRVWWVSKQSS 341 (353)
Q Consensus 305 ~v~~~~~~~-~~~~~~~~l~s~~----------------~dg~i~iw~~~~~~~ 341 (353)
.. +.|+| + ++++++++ .++.|.+||+.+++.
T Consensus 285 -~~-~~~s~~d----g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 285 -CS-HLMSNFD----GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp -EE-EEEECSS----SSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred -CC-CCccCCC----CceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 23 88999 8 88888754 347899999987654
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.53 E-value=7.4e-13 Score=107.99 Aligned_cols=170 Identities=14% Similarity=0.055 Sum_probs=125.0
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCce-----------eeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLR-----------MFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~ 84 (353)
+++.++++ ..++++|+.+ .+++|++++.+ ...... +.. |+.++|+++.|+++ .++.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCFHGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence 68889996 7789999987 56669865433 212333 445 99999988889888 88999999998
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeec
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 164 (353)
+...... ...|...+.++.+.+..+++++.||.|.+||+.++....
T Consensus 115 sl~~~~~--------------------------------~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-- 160 (388)
T 1xip_A 115 ELSEFRT--------------------------------VTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-- 160 (388)
T ss_dssp STTCEEE--------------------------------EEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE--
T ss_pred hhhccCc--------------------------------cceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc--
Confidence 7652111 114556677877777568999999999999998776643
Q ss_pred cccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeee------e---ccCCceeeEEEEcCCCCeEEe
Q 018591 165 KAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGIL------E---GHKDVSLNSVVVSDDGKWVYG 231 (353)
Q Consensus 165 ~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~---~~~~~~v~~~~~~~~~~~l~~ 231 (353)
+...|++++|+++-++.|..||++++|+....... ....+ . +|. ..|.++.|.+++.++++
T Consensus 161 --~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~---~k~~I~~Pp~~~~~~~~~-~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 161 --LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEME---KQFEFSLPSELEELPVEE-YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEE---EEEEECCCHHHHTSCTTT-SEEEEEEESSSSEEEEE
T ss_pred --ccCCceEEEEcCCceEEEEcCCcEEEEcCCCcccc---ccceecCCcccccccCCC-eeEEEEEEecCCeEEEE
Confidence 45689999997666889999999999988776510 02222 2 233 44599999999988876
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.53 E-value=9.8e-12 Score=102.85 Aligned_cols=283 Identities=10% Similarity=0.045 Sum_probs=177.7
Q ss_pred CCcEEEEEeC-C----CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec----------CCCcEEEEEcccCc
Q 018591 25 CGEFILSASQ-G----KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH----------QDSRIRVWKVSRSS 87 (353)
Q Consensus 25 ~~~~l~s~~~-d----g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~~w~~~~~~ 87 (353)
+++.++.... + +.|.+.|..+++.+..+.....+ .+.++ +++++.+. .++.|.++|..+.+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 4554544443 3 69999999999999998765555 67777 77777665 46789999998876
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeee
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLES 163 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~ 163 (353)
.+..++.... .+. .....-..+.+++ ++++++.. ++.|.+.|+.+++.+.+
T Consensus 161 -----vv~~I~v~g~------------------~r~--~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~ 215 (426)
T 3c75_H 161 -----PIADIELPDA------------------PRF--LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRM 215 (426)
T ss_dssp -----EEEEEEETTC------------------CCC--CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred -----EEEEEECCCc------------------ccc--ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence 2222211000 000 0011223567777 67777653 58899999999999888
Q ss_pred ccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591 164 IKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 164 ~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 242 (353)
+.-... ..+.. .+..+++.+.||.+.+.+..+++.... ....+..........+.+.+++..++.....+.+.+.|
T Consensus 216 I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~-~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 216 LDVPDC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVT-NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp EECCSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE-ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred EEcCCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE-eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 764221 12222 334677788899999999855541100 00112222222223467889988877777889999999
Q ss_pred ccccccceeeeeec----------cccceeEEEEEEcCcEEEEec----------CCCeEEEEecCCCcceEEeccccCC
Q 018591 243 GNVEIVRWKLACET----------KAHEMAVLCVCLVGEFLCSGS----------ADKSIGIWKREAFGKLCRVGAITGH 302 (353)
Q Consensus 243 ~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~h 302 (353)
.............. .........++++++.+++.. .++.|.++|..+.+.. ..+..
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv---~~I~v- 368 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI---NKIEL- 368 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEE-
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE---EEEEC-
Confidence 86542111000000 011111247788877666553 2468999999998844 33321
Q ss_pred CcCeEEEEeecCCCCCCe-EEEEcc-CCCeEEEEEcCCCCCcccc
Q 018591 303 EGPVKCLQASPNAVGGGF-LLYSGS-LDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 303 ~~~v~~~~~~~~~~~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~~ 345 (353)
......+.|+|| ++ +++++. .++.|.++|+.+.+.+.+.
T Consensus 369 g~~P~gia~spD----g~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GHEIDSINVSQD----AEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECEEEECCS----SSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCcCeEEEccC----CCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 224889999999 87 787777 5999999999999988774
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=1.2e-10 Score=93.82 Aligned_cols=239 Identities=10% Similarity=0.049 Sum_probs=146.3
Q ss_pred eeEEEEEe--CCEEEE-------ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591 58 SVKAVVTV--GNKVFT-------AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA 128 (353)
Q Consensus 58 ~v~~~~~~--~~~l~s-------~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (353)
...+++|+ +..+++ ...++.|..||..+++..... . +. ..++.
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~---~-~~------------------------~~~~~ 70 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC---K-PE------------------------VNGYG 70 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---C-CE------------------------ETTEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE---e-cc------------------------cCCCC
Confidence 45677776 555555 467789999998766521110 0 00 00234
Q ss_pred CceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee-ccc----cCcceEEEEE-eCCeEE-EEcCC------------
Q 018591 129 DSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES-IKA----HDDAVNGLVA-SKGIVY-SASAD------------ 187 (353)
Q Consensus 129 ~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~-~~~----~~~~v~~i~~-~~~~l~-~~~~d------------ 187 (353)
..+.++.+++ +.+..++..+.|.+||.. ++.... ... ....+.++++ +++.++ +...+
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~ 149 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence 5678888887 466666655689999987 665433 221 1245788998 444444 44333
Q ss_pred ---CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc----CCCCeEEe-ecCCCcEEEeecc-ccccc-eeeeeecc
Q 018591 188 ---GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS----DDGKWVYG-GGSDGFVMGWEGN-VEIVR-WKLACETK 257 (353)
Q Consensus 188 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~-~~~dg~i~i~d~~-~~~~~-~~~~~~~~ 257 (353)
+.|..||.. ++ .... ..+...+ ..++++ |+++.++. ...++.|.+|+.. .+... ......+.
T Consensus 150 ~~~~~l~~~~~~-g~-----~~~~-~~~~~~~-~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 221 (314)
T 1pjx_A 150 EKFGSIYCFTTD-GQ-----MIQV-DTAFQFP-NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP 221 (314)
T ss_dssp SSCEEEEEECTT-SC-----EEEE-EEEESSE-EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred CCCCeEEEECCC-CC-----EEEe-ccCCCCc-ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC
Confidence 567777765 43 2222 2222333 789999 99976554 4567899999976 23111 11222223
Q ss_pred ccc-eeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe-EEEEccCCCeEEE
Q 018591 258 AHE-MAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF-LLYSGSLDKSLRV 333 (353)
Q Consensus 258 ~~~-~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~dg~i~i 333 (353)
.+. .....+.+ +|+++++...++.|.+||..+++. +..+..+...+.+++|+|+ ++ ++++...++.|..
T Consensus 222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~i~~~~d----g~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP---KMRIRCPFEKPSNLHFKPQ----TKTIFVTEHENNAVWK 294 (314)
T ss_dssp CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC---SEEEECSSSCEEEEEECTT----SSEEEEEETTTTEEEE
T ss_pred CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE---eEEEeCCCCCceeEEECCC----CCEEEEEeCCCCeEEE
Confidence 222 33444544 577777777888999999886653 3334445578999999998 87 5556666789999
Q ss_pred EEcCCCC
Q 018591 334 WWVSKQS 340 (353)
Q Consensus 334 w~~~~~~ 340 (353)
|++....
T Consensus 295 ~~~~~~g 301 (314)
T 1pjx_A 295 FEWQRNG 301 (314)
T ss_dssp EECSSCB
T ss_pred EeCCCCC
Confidence 9987643
No 204
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.50 E-value=7.3e-11 Score=104.77 Aligned_cols=320 Identities=11% Similarity=0.084 Sum_probs=184.2
Q ss_pred CCCCceeeeeeCccC-----------ceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccC-c----eeeE-EEEEe
Q 018591 3 CKSHRSLAVLSGHVG-----------SVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHG-D----GSVK-AVVTV 65 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~-----------~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~----~~v~-~~~~~ 65 (353)
..+|+.+..++.... .-..+++.+..++.++.|+.|..+|..+|+.+..+..+ . ..+. .....
T Consensus 94 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~ 173 (677)
T 1kb0_A 94 TRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF 173 (677)
T ss_dssp TTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE
T ss_pred CCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE
Confidence 456777766664322 11345566788899999999999999999999888654 1 1221 22234
Q ss_pred CCEEEEecC------CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee--ecCCceEEEEEe
Q 018591 66 GNKVFTAHQ------DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI--EHADSISCLTVY 137 (353)
Q Consensus 66 ~~~l~s~~~------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~ 137 (353)
++.++.++. +|.|+.+|.++++..-...................... ..-......+. +.......++++
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~--~~w~~~g~~~~~~~g~~~w~~~~~d 251 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA--RTWDPSGKWWEAGGGGTMWDSMTFD 251 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH--TTSCGGGCHHHHCEECCCCSCEEEE
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccc--ccccccCceeEeCCCcccccceeEc
Confidence 666666654 78999999998873211111000000000000000000 00000000000 122222356666
Q ss_pred C--CeEEEecCCC-------------------cEEEEEcCCceeeeeccc--cC--------cceE-EEEEeC---CeEE
Q 018591 138 N--GLIYSGSWDK-------------------TLKVWRVADLKCLESIKA--HD--------DAVN-GLVASK---GIVY 182 (353)
Q Consensus 138 ~--~~l~~~~~dg-------------------~v~iwd~~~~~~~~~~~~--~~--------~~v~-~i~~~~---~~l~ 182 (353)
+ +.++.+..++ .|..+|.++++.+..++. |. .++. .....+ ..++
T Consensus 252 ~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~ 331 (677)
T 1kb0_A 252 AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVIL 331 (677)
T ss_dssp TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEE
Confidence 6 6777776654 599999999998877653 21 1111 111122 4788
Q ss_pred EEcCCCcEEEEeCCCCCcccccceeeeecc----------CCce------------------------eeEEEEcCCCCe
Q 018591 183 SASADGKIKAWGKELGKSHCHSLKGILEGH----------KDVS------------------------LNSVVVSDDGKW 228 (353)
Q Consensus 183 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~------------------------v~~~~~~~~~~~ 228 (353)
.++.+|.++++|.++++. +...... ...+ ...++++|+..+
T Consensus 332 ~~~~~G~l~~lD~~tG~~-----l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 332 HAPKNGFFFVLDRTNGKF-----ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp ECCTTSEEEEEETTTCCE-----EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred EECCCCEEEEEECCCCCE-----eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 999999999999999883 2111100 0000 025788998888
Q ss_pred EEeecC-------------------------------------------CCcEEEeeccccccceeeeeeccccceeEEE
Q 018591 229 VYGGGS-------------------------------------------DGFVMGWEGNVEIVRWKLACETKAHEMAVLC 265 (353)
Q Consensus 229 l~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 265 (353)
+++... .|.|..||+.+++..++....... .-..
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~---~~g~ 483 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW---NGGT 483 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC---CCCE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCC---cCcc
Confidence 877532 277999999998766655432211 1123
Q ss_pred EEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe-EEEEccC----------------C
Q 018591 266 VCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF-LLYSGSL----------------D 328 (353)
Q Consensus 266 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~----------------d 328 (353)
+...+.+++.++.||.+++||..+++.+..+.. ++.....-+.|.++ |+ ++++.+. .
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~--~~~~~~~p~~y~~~----G~~~v~~~~G~~~~~~~~~~~~~~~~~ 557 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT--GTGVVAAPSTYMVD----GRQYVSVAVGWGGVYGLAARATERQGP 557 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEET----TEEEEEEEECCCHHHHHHCCSCSCCCC
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCceeeeeeC--CCCcccCCEEEEeC----CEEEEEEeccCCccccccccccccCCC
Confidence 556788889999999999999999985443322 22223344566677 65 4444222 4
Q ss_pred CeEEEEEcCC
Q 018591 329 KSLRVWWVSK 338 (353)
Q Consensus 329 g~i~iw~~~~ 338 (353)
+.+.+|.+..
T Consensus 558 ~~l~~f~l~~ 567 (677)
T 1kb0_A 558 GTVYTFVVGG 567 (677)
T ss_dssp CEEEEEEETC
T ss_pred CeEEEEeccc
Confidence 6888898874
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=1.2e-10 Score=93.85 Aligned_cols=244 Identities=7% Similarity=0.039 Sum_probs=147.9
Q ss_pred eeeCccCceEEEEEC--CcEEEE-------EeCCCcEEEEeCCCceeeEEec----cCceeeEEEEEe-C-CEEEEecCC
Q 018591 11 VLSGHVGSVSSLALC--GEFILS-------ASQGKDIIVWQQPDLRMFTKFG----HGDGSVKAVVTV-G-NKVFTAHQD 75 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~--~~~l~s-------~~~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~-~-~~l~s~~~d 75 (353)
.+...-....+++|+ ++++++ +..++.|.+||..+++...... ++...+..++++ . ..++.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~ 91 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR 91 (314)
T ss_dssp EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence 344455567899996 677777 5778999999988877653322 244668888887 4 566666655
Q ss_pred CcEEEEEcccCccceeEEe-eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC-----
Q 018591 76 SRIRVWKVSRSSENVFRLV-DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD----- 147 (353)
Q Consensus 76 g~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d----- 147 (353)
+.|.+||.+ ++. ... ...... .....+.++++++ .++++...+
T Consensus 92 ~~l~~~d~~-g~~---~~~~~~~~~~-------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 142 (314)
T 1pjx_A 92 LGLLVVQTD-GTF---EEIAKKDSEG-------------------------RRMQGCNDCAFDYEGNLWITAPAGEVAPA 142 (314)
T ss_dssp TEEEEEETT-SCE---EECCSBCTTS-------------------------CBCBCCCEEEECTTSCEEEEECBCBCTTS
T ss_pred CCEEEEeCC-CCE---EEEEeccCCC-------------------------ccccCCcCEEECCCCCEEEEecCcccccc
Confidence 578899987 441 111 000000 1223467888887 444444433
Q ss_pred ----------CcEEEEEcCCceeeeeccccCcceEEEEEe----CC--eE-EEEcCCCcEEEEeCC-CCCcccccceeee
Q 018591 148 ----------KTLKVWRVADLKCLESIKAHDDAVNGLVAS----KG--IV-YSASADGKIKAWGKE-LGKSHCHSLKGIL 209 (353)
Q Consensus 148 ----------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~----~~--~l-~~~~~dg~i~iwd~~-~~~~~~~~~~~~~ 209 (353)
+.|..||.. ++..... .+......+++. ++ .+ ++...++.|.+||.. ++..........+
T Consensus 143 ~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 220 (314)
T 1pjx_A 143 DYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp CCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred cccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC
Confidence 567777765 4443322 233445777776 54 44 444567899999986 3321111112222
Q ss_pred eccC-CceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCc-EEEEecCCCeEEEE
Q 018591 210 EGHK-DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGE-FLCSGSADKSIGIW 285 (353)
Q Consensus 210 ~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iw 285 (353)
..+. ..+ ..++++++|++.++...++.|.+||..++.. ......+...+.++.+ +++ ++++...++.|..|
T Consensus 221 ~~~~~~~p-~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 221 PGTHEGGA-DGMDFDEDNNLLVANWGSSHIEVFGPDGGQP----KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp CCCSSCEE-EEEEEBTTCCEEEEEETTTEEEEECTTCBSC----SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCCCC-CceEECCCCCEEEEEcCCCEEEEEcCCCCcE----eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence 2332 334 8899999998888877788999999885532 2222233344555554 577 44555567899999
Q ss_pred ecCCC
Q 018591 286 KREAF 290 (353)
Q Consensus 286 ~~~~~ 290 (353)
++...
T Consensus 296 ~~~~~ 300 (314)
T 1pjx_A 296 EWQRN 300 (314)
T ss_dssp ECSSC
T ss_pred eCCCC
Confidence 98754
No 206
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=6e-10 Score=89.04 Aligned_cols=233 Identities=11% Similarity=0.083 Sum_probs=148.8
Q ss_pred cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCce
Q 018591 54 HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSI 131 (353)
Q Consensus 54 ~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 131 (353)
.+...+.+++++ ++..++...++.|..||.. +.. .... .+ .+...+
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~---~~~~-~~---------------------------~~~~~~ 59 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI---TEYP-LP---------------------------TPDAKV 59 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE---EEEE-CS---------------------------STTCCE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe---EEec-CC---------------------------cccCce
Confidence 344678888887 5555555557899999987 431 1110 00 133567
Q ss_pred EEEEEeC--CeEEEecCCCcEEEEEcCCcee-eeeccccCcceEEEEEe-CC-eEEEEcCCCcEEEEeCCCCCcccccce
Q 018591 132 SCLTVYN--GLIYSGSWDKTLKVWRVADLKC-LESIKAHDDAVNGLVAS-KG-IVYSASADGKIKAWGKELGKSHCHSLK 206 (353)
Q Consensus 132 ~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~i~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 206 (353)
.++++++ ..+++...++.|..||.. ++. ...+......+.++++. ++ .+++...++.|..||. +++ ..
T Consensus 60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-----~~ 132 (299)
T 2z2n_A 60 MCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK-----IR 132 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-----EE
T ss_pred eeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC-----EE
Confidence 8889887 445554557889999976 332 12222245578889884 44 4455556789999998 444 22
Q ss_pred ee-eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEE
Q 018591 207 GI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIG 283 (353)
Q Consensus 207 ~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 283 (353)
.. .......+ ..++++++++..++...++.|..||. ++.... .........+..+.. ++++.++...++.|.
T Consensus 133 ~~~~~~~~~~~-~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 133 EYELPNKGSYP-SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTPASGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp EEECSSTTCCE-EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred EecCCCCCCCC-ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence 11 12222334 89999999988887777889999998 442111 112222333445555 477777766788999
Q ss_pred EEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 284 IWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 284 iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
+||. +++. .. .....+...+.+++++++ |.++++...++.|..|+..
T Consensus 208 ~~~~-~g~~-~~-~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 208 RITT-SGEI-TE-FKIPTPNARPHAITAGAG----IDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EECT-TCCE-EE-EECSSTTCCEEEEEECST----TCEEEEETTTTEEEEEETT
T ss_pred EECC-CCcE-EE-EECCCCCCCceeEEECCC----CCEEEeccCCceEEEECCC
Confidence 9998 5542 12 223345567999999998 8877777678899999973
No 207
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.49 E-value=1.9e-11 Score=108.68 Aligned_cols=283 Identities=12% Similarity=0.081 Sum_probs=172.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCceeeEEeccCcee-----------eEEEEEeCCEEEEecCCCcEEEEEcccCccceeEE
Q 018591 25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS-----------VKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 93 (353)
.+..|+.++.++.|..+|..+|+.+..+..+... -..+...+..++.++.|+.|..+|.++++..-...
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 4667788888999999999999999888653221 12344568899999999999999999887321111
Q ss_pred eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec------CCCcEEEEEcCCceeeeecccc
Q 018591 94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS------WDKTLKVWRVADLKCLESIKAH 167 (353)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~ 167 (353)
.. ..... .+.....+ ....+.++++. .+|.|+.||.++++.+..+...
T Consensus 149 ~~-~~~~~---------------------~~~~~~sP----~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 202 (689)
T 1yiq_A 149 TR-ADHKR---------------------SYTITGAP----RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTV 202 (689)
T ss_dssp CC-SCTTS---------------------CCBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred Cc-CCCCC---------------------CccccCCc----EEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEeccc
Confidence 10 00000 00000111 11235555554 3689999999999988766421
Q ss_pred C-------------------------------cceEEEEEe--CCeEEEEcCCCc-------------------EEEEeC
Q 018591 168 D-------------------------------DAVNGLVAS--KGIVYSASADGK-------------------IKAWGK 195 (353)
Q Consensus 168 ~-------------------------------~~v~~i~~~--~~~l~~~~~dg~-------------------i~iwd~ 195 (353)
. .....+++. .+.++.++.++. |..+|.
T Consensus 203 ~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~ 282 (689)
T 1yiq_A 203 PGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNA 282 (689)
T ss_dssp CCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEET
T ss_pred CCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEc
Confidence 0 001245553 457888877763 999999
Q ss_pred CCCCcccccceeeeec--cC------CceeeEEEEcCCCC---eEEeecCCCcEEEeeccccccceeeeeec--------
Q 018591 196 ELGKSHCHSLKGILEG--HK------DVSLNSVVVSDDGK---WVYGGGSDGFVMGWEGNVEIVRWKLACET-------- 256 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~--~~------~~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------- 256 (353)
++++ ..-.++. +. ...........+|+ .++.++.+|.++++|..+++..+......
T Consensus 283 ~TG~-----~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 283 DTGE-----YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp TTCC-----EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred cCCc-----eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9998 3333322 11 01111122223554 78899999999999999886542211100
Q ss_pred ----------------cc-------------cceeEEEEEEcCcEEEEec------------------------------
Q 018591 257 ----------------KA-------------HEMAVLCVCLVGEFLCSGS------------------------------ 277 (353)
Q Consensus 257 ----------------~~-------------~~~~v~~~~~~~~~l~~~~------------------------------ 277 (353)
.. +.-.-.+++++..++++..
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 00 0000134444445555431
Q ss_pred ---------------CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 278 ---------------ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 278 ---------------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
.+|.|+.||+.+++..... ..+ .++..-.+... +.+++.++.||.++.||.++++.+
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~---~~~-~~~~~g~~~ta----gglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEV---PYV-TIFNGGTLSTA----GNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEE---EES-SSCCCCEEEET----TTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEc---cCC-CCccCccceEC----CCEEEEECCCCcEEEEECCCCccc
Confidence 1488999999998854333 222 23333355556 778999999999999999999998
Q ss_pred cccc
Q 018591 343 SDSE 346 (353)
Q Consensus 343 ~~~~ 346 (353)
.+.+
T Consensus 510 w~~~ 513 (689)
T 1yiq_A 510 WEQP 513 (689)
T ss_dssp EEEE
T ss_pred eeee
Confidence 7665
No 208
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.48 E-value=1.7e-11 Score=108.85 Aligned_cols=281 Identities=11% Similarity=0.073 Sum_probs=177.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCceeeEEeccCce-----------eeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEE
Q 018591 25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDG-----------SVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 93 (353)
.+..|+.++.++.|.-+|..+|+.+..+..... ....+.+.+..++.++.|+.|..+|..+++......
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 466777788889999999999999988865421 113455678899999999999999999887321111
Q ss_pred eeccccccceeeeecccceeEeecccceeeeeecCCceE-EEEEeCCeEEEecC------CCcEEEEEcCCceeeeeccc
Q 018591 94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS-CLTVYNGLIYSGSW------DKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~ 166 (353)
... .. .....+. ......+.+++++. ++.|+.+|..+++.+..+..
T Consensus 156 ~~~-~~--------------------------~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 156 TFE-GQ--------------------------KGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp TTT-TC--------------------------CSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCc-Cc--------------------------CcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 000 00 0000000 11122356666654 68999999999998877643
Q ss_pred cCcc--------------------------------eEEEEE--eCCeEEEEcCCC-------------------cEEEE
Q 018591 167 HDDA--------------------------------VNGLVA--SKGIVYSASADG-------------------KIKAW 193 (353)
Q Consensus 167 ~~~~--------------------------------v~~i~~--~~~~l~~~~~dg-------------------~i~iw 193 (353)
.... ...+++ ..+.++.++.++ .|..+
T Consensus 209 ~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~Al 288 (677)
T 1kb0_A 209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL 288 (677)
T ss_dssp SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred CCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEE
Confidence 2111 123455 345777776654 59999
Q ss_pred eCCCCCcccccceeeeec--cC-------CceeeEEEEcCCC---CeEEeecCCCcEEEeeccccccceeeeeeccc---
Q 018591 194 GKELGKSHCHSLKGILEG--HK-------DVSLNSVVVSDDG---KWVYGGGSDGFVMGWEGNVEIVRWKLACETKA--- 258 (353)
Q Consensus 194 d~~~~~~~~~~~~~~~~~--~~-------~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--- 258 (353)
|.++++ ..-.++. +. ..+ ..+....+| ..++.++.+|.++++|..+++..+........
T Consensus 289 D~~TG~-----~~W~~~~~~~d~wd~~~~~~p-~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 289 DPDTGK-----YKWHYQETPGDNWDYTSTQPM-ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp CTTTCC-----EEEEEESSTTCCSCCCCCSCC-EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred ECCCCC-----EEEEEecCCCcccccccCCCc-EEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 999988 3333222 11 112 223333467 68999999999999999998654433211000
Q ss_pred ------------------------------cceeEEEEEEcCcEEEEecC------------------------------
Q 018591 259 ------------------------------HEMAVLCVCLVGEFLCSGSA------------------------------ 278 (353)
Q Consensus 259 ------------------------------~~~~v~~~~~~~~~l~~~~~------------------------------ 278 (353)
+.-...+++++..++++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 00012345555566665432
Q ss_pred -------------CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 279 -------------DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 279 -------------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
.|.|..||+.+++...... +..++....+..+ +.+++.++.||.+++||.++++.+.+.
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~----~~~~~~~g~~~~~----g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE----HVSPWNGGTLTTA----GNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEE----ESSSCCCCEEEET----TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecC----CCCCCcCcceEeC----CCEEEEECCCCcEEEEECCCCceeeee
Confidence 2789999999988544332 2334455556666 778888999999999999999988766
Q ss_pred c
Q 018591 346 E 346 (353)
Q Consensus 346 ~ 346 (353)
.
T Consensus 515 ~ 515 (677)
T 1kb0_A 515 P 515 (677)
T ss_dssp E
T ss_pred e
Confidence 5
No 209
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.47 E-value=4.2e-12 Score=103.21 Aligned_cols=308 Identities=15% Similarity=0.092 Sum_probs=168.3
Q ss_pred CCceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEE
Q 018591 5 SHRSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~ 82 (353)
+++++..+..+.....+..++ +..+..++.++.|..|| .+++....+..+...+.++..+ +..++.++.+ |..+|
T Consensus 8 ~g~~~W~~~~~~~~~~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d 84 (330)
T 3hxj_A 8 DCKIKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAIN 84 (330)
T ss_dssp ----CCTTTSCEEECCCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEEC
T ss_pred CceEEEEEeCCCCcccCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEEC
Confidence 344444444444555666664 56667777777788888 7777766665555566667665 5566666555 77777
Q ss_pred cccCccceeEEeecccc----ccceeeeecccceeEeecccceeee--eecCCceEEEEEeC-CeEEEecCCCcEEEEEc
Q 018591 83 VSRSSENVFRLVDTLPT----TKDYLGKFMKQSNYVQTRRHHKRLW--IEHADSISCLTVYN-GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~ 155 (353)
................. ....+-..................+ ......+.++...+ +.+..++.++.|..+|.
T Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 85 PDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINP 164 (330)
T ss_dssp CCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECT
T ss_pred CCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECC
Confidence 53222111110000000 0000000000011111110011111 12223344555664 77888888899999998
Q ss_pred CCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC
Q 018591 156 ADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS 234 (353)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 234 (353)
. ++....+......+.++.. .++.++.++ +.|..+| .+++ .......... .+.++...+++. +..++.
T Consensus 165 ~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~-----~~~~~~~~~~-~~~~~~~~~~g~-l~v~t~ 233 (330)
T 3hxj_A 165 D-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT-----EKWNFYAGYW-TVTRPAISEDGT-IYVTSL 233 (330)
T ss_dssp T-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC-----EEEEECCSSC-CCSCCEECTTSC-EEEEET
T ss_pred C-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc-----EEEEEccCCc-ceeceEECCCCe-EEEEcC
Confidence 8 7777666655566777777 566777777 8899999 5554 2223332222 347888888875 555666
Q ss_pred CCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591 235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 313 (353)
++.+..+|.... ..+.. .........+..+ +..|..++.+|.|..+|. +++. +..+......+.++...+
T Consensus 234 ~~gl~~~~~~g~-~~~~~----~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~---~~~~~~~~~~~~~~~~d~ 304 (330)
T 3hxj_A 234 DGHLYAINPDGT-EKWRF----KTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTE---KWNFETGSWIIATPVIDE 304 (330)
T ss_dssp TTEEEEECTTSC-EEEEE----ECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCE---EEEEECSSCCCSCCEECT
T ss_pred CCeEEEECCCCC-EeEEe----eCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcE---EEEEEcCCccccceEEcC
Confidence 777888875332 22221 1111111222334 567788888888999996 5553 222333345567777766
Q ss_pred CCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 314 NAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 314 ~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+ +. |..++.+|.+++...+..+
T Consensus 305 ~----g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 305 N----GT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp T----CC-EEEECTTSCEEEEEC----
T ss_pred C----CE-EEEEcCCCeEEEEeccccc
Confidence 6 54 5668889999988766543
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=6.3e-11 Score=106.94 Aligned_cols=271 Identities=11% Similarity=0.006 Sum_probs=157.9
Q ss_pred EECCcEEEEEeCCCc---EEEEe--CC---CceeeEEe------ccCceeeEEEEEe--CCEEEEecCC-----CcEEEE
Q 018591 23 ALCGEFILSASQGKD---IIVWQ--QP---DLRMFTKF------GHGDGSVKAVVTV--GNKVFTAHQD-----SRIRVW 81 (353)
Q Consensus 23 ~~~~~~l~s~~~dg~---v~vwd--~~---~~~~~~~~------~~~~~~v~~~~~~--~~~l~s~~~d-----g~i~~w 81 (353)
..+|++++....++. -.+|. .. .++....+ .+|...+..+.|+ +++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 356777766654432 45554 33 33333322 2233467888888 7777766543 369999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCC------------
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDK------------ 148 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg------------ 148 (353)
|+++++.... . .+...+..++|+| +.|+.++.++
T Consensus 195 dl~tg~~~~~----~-----------------------------~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 195 GVADGKPLAD----E-----------------------------LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp ETTTCCEEEE----E-----------------------------EEEEESCCCEESTTSEEEEEECCCC--------CCC
T ss_pred ECCCCCCCCc----c-----------------------------CCCceeccEEEECCCEEEEEEecCcccccccccCCC
Confidence 9998862110 0 0111123567777 5666666554
Q ss_pred --cEEEEEcCCce----eeeeccccCcceEEEEEeCC--eEEEEcCC-----CcEEEEeCCCCCcccccceeeeeccCCc
Q 018591 149 --TLKVWRVADLK----CLESIKAHDDAVNGLVASKG--IVYSASAD-----GKIKAWGKELGKSHCHSLKGILEGHKDV 215 (353)
Q Consensus 149 --~v~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~--~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (353)
.|++|++.++. .+.....+...+..+.|+++ .++..+.+ ..|++||+.++... ....+..+...
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~ 318 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG---PVTALIPDLKA 318 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC---CCEEEECSSSS
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc---ccEEecCCCCc
Confidence 38999987654 22232333345788888443 56655543 38999999876210 12333344433
Q ss_pred eeeEEEEcCCCCeEEeecC----CCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecC-C
Q 018591 216 SLNSVVVSDDGKWVYGGGS----DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKRE-A 289 (353)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~-~ 289 (353)
. ... ++|+++.|+..+. ++.|.+||+.... .........+...+..+.+. +.++++...|+..+||.+. +
T Consensus 319 ~-~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~ 394 (741)
T 1yr2_A 319 Q-WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD 394 (741)
T ss_dssp C-EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT
T ss_pred e-EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC
Confidence 3 333 3488888877665 3459999987642 01122223333445566665 5677788889887777654 3
Q ss_pred CcceEEeccccC-CCcCeEEEEeecCCCCCCeEEE----EccCCCeEEEEEcCCCC
Q 018591 290 FGKLCRVGAITG-HEGPVKCLQASPNAVGGGFLLY----SGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 290 ~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~----s~~~dg~i~iw~~~~~~ 340 (353)
++ ....+.. +.+.+..+.++|+ ++.|+ +....++|.+||+.+++
T Consensus 395 g~---~~~~l~~~~~~~v~~~~~s~d----~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 395 GK---PAGAVSLPGIGSASGLSGRPG----DRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SC---EEEECBCSSSCEEEEEECCBT----CSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CC---ceeeccCCCCeEEEEeecCCC----CCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 33 2333333 3567899999998 66555 34456899999998765
No 211
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.45 E-value=2.2e-12 Score=104.91 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=114.4
Q ss_pred EeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591 136 VYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD 214 (353)
Q Consensus 136 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 214 (353)
...+.+..++.++.|..+|.. ++.......+...+.++.. .++.++.++.++.|..+|.. ++ ..........
T Consensus 105 ~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~-----~~~~~~~~~~ 177 (330)
T 3hxj_A 105 IFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GT-----EKWRFKTNDA 177 (330)
T ss_dssp EETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SC-----EEEEEECSSC
T ss_pred EECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC-----EeEEEecCCC
Confidence 336788889989999999987 7776666555555666666 46788889989999999998 65 3333333333
Q ss_pred ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC-cEEEEecCCCeEEEEecCCCcce
Q 018591 215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG-EFLCSGSADKSIGIWKREAFGKL 293 (353)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~ 293 (353)
.+.++...+++...+ ++ +.+..+| .++...+.. ......+.++..++ ..|..++.++.|..+|. +++..
T Consensus 178 -~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~----~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~ 247 (330)
T 3hxj_A 178 -ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF----YAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEK 247 (330)
T ss_dssp -CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE----CCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEE
T ss_pred -ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE----ccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEe
Confidence 336777877777544 44 7799999 555332222 22223344555553 36777777888888874 44432
Q ss_pred EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 294 CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 294 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
..+......+.++...++ + .|..++.+|.|..+|. +++..
T Consensus 248 ---~~~~~~~~~~~~~~~~~~----g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 248 ---WRFKTGKRIESSPVIGNT----D-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp ---EEEECSSCCCSCCEECTT----S-CEEEECTTCEEEEECT-TSCEE
T ss_pred ---EEeeCCCCccccceEcCC----C-eEEEecCCCCEEEECC-CCcEE
Confidence 222323333444555554 4 5666777888888885 44433
No 212
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.45 E-value=2.3e-10 Score=101.81 Aligned_cols=303 Identities=11% Similarity=0.065 Sum_probs=170.6
Q ss_pred CCCCceeeeeeCccCc-----------eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccC--c---eeeE-EEEEe
Q 018591 3 CKSHRSLAVLSGHVGS-----------VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHG--D---GSVK-AVVTV 65 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~-----------v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~---~~v~-~~~~~ 65 (353)
..+|+.+..+..+... -..+++.+..++.++.|+.|..+|..+|+.+..+... . ..+. +-...
T Consensus 87 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~ 166 (689)
T 1yiq_A 87 ARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV 166 (689)
T ss_dssp TTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE
T ss_pred CCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE
Confidence 4577777776644321 1234556778889999999999999999999877542 1 1111 11223
Q ss_pred CCEEEEec------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee---eecCCceEEEEE
Q 018591 66 GNKVFTAH------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW---IEHADSISCLTV 136 (353)
Q Consensus 66 ~~~l~s~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~ 136 (353)
++.++.++ .+|.|..||.++++..-.. ...+...... +................| .++......+++
T Consensus 167 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~--~~~~~~p~~~--~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~ 242 (689)
T 1yiq_A 167 NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF--YTVPGDPKLP--PEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAY 242 (689)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE--ESSCCCTTSC--CCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEE
T ss_pred CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe--cccCCCcccc--cccccccccccccCCceeeecCCCCccccceeE
Confidence 55666554 3789999999988732111 1111000000 000000000000000000 011222235677
Q ss_pred eC--CeEEEecCCCc-------------------EEEEEcCCceeeeeccc--cC-------cceE--EEEEeCC---eE
Q 018591 137 YN--GLIYSGSWDKT-------------------LKVWRVADLKCLESIKA--HD-------DAVN--GLVASKG---IV 181 (353)
Q Consensus 137 ~~--~~l~~~~~dg~-------------------v~iwd~~~~~~~~~~~~--~~-------~~v~--~i~~~~~---~l 181 (353)
++ ++++.++.++. |..+|.++++.+..++. |. .+.. .+.+.+. .+
T Consensus 243 d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v 322 (689)
T 1yiq_A 243 DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVL 322 (689)
T ss_dssp ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEE
T ss_pred cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEE
Confidence 76 78888877763 99999999999887754 21 1111 1222222 68
Q ss_pred EEEcCCCcEEEEeCCCCCcccccce------ee-----------------eecc----------CCceeeEEEEcCCCCe
Q 018591 182 YSASADGKIKAWGKELGKSHCHSLK------GI-----------------LEGH----------KDVSLNSVVVSDDGKW 228 (353)
Q Consensus 182 ~~~~~dg~i~iwd~~~~~~~~~~~~------~~-----------------~~~~----------~~~~v~~~~~~~~~~~ 228 (353)
+.++.+|.++++|.++++....... .. +... .......++++|+..+
T Consensus 323 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~ 402 (689)
T 1yiq_A 323 MQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGL 402 (689)
T ss_dssp EECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred EEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCE
Confidence 8899999999999999883210000 00 0000 0001124788888777
Q ss_pred EEeecC---------------------------------------------CCcEEEeeccccccceeeeeeccccceeE
Q 018591 229 VYGGGS---------------------------------------------DGFVMGWEGNVEIVRWKLACETKAHEMAV 263 (353)
Q Consensus 229 l~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 263 (353)
+++... +|.|..||+.+++..++........ -
T Consensus 403 ~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~---~ 479 (689)
T 1yiq_A 403 VYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN---G 479 (689)
T ss_dssp EEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC---C
T ss_pred EEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc---C
Confidence 776421 3779999999987666544322111 1
Q ss_pred EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 264 LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 264 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
-.+...+.+++.|+.||.++.||.++++.+..... ++.....-+.|..+
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~--~~~~~~~p~ty~~~ 528 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA--ASGVMAAPVTYSVD 528 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEET
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCccceeeeC--CCCcccCceEEEEC
Confidence 24455688999999999999999999985433322 22222234667777
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.45 E-value=9e-12 Score=101.65 Aligned_cols=171 Identities=11% Similarity=-0.074 Sum_probs=122.1
Q ss_pred ceEEEEEeC--CeEEEecCCCcEEEEEcCCce-----------eeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCC
Q 018591 130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLK-----------CLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKE 196 (353)
Q Consensus 130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~ 196 (353)
.++.+++++ +++++|+.++ +.+|++.+.+ ..... .+.. |+.++|.++.|+++ .++.|++||++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence 688899988 8888888875 6669876433 11122 3456 99999955577777 88999999998
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEe
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG 276 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 276 (353)
+.. .......+...+ ..+.+.+. .+++++.||.+.+||+..+.. .. +...+.|++|+.+-++.|
T Consensus 115 sl~-----~~~~~~~~~~~v-~~i~~~~p--~~av~~~dG~L~v~dl~~~~~----~~----~~~~Vs~v~WSpkG~~vg 178 (388)
T 1xip_A 115 ELS-----EFRTVTSFEKPV-FQLKNVNN--TLVILNSVNDLSALDLRTKST----KQ----LAQNVTSFDVTNSQLAVL 178 (388)
T ss_dssp STT-----CEEEEEECSSCE-EEEEECSS--EEEEEETTSEEEEEETTTCCE----EE----EEESEEEEEECSSEEEEE
T ss_pred hhh-----ccCccceeecce-eeEEecCC--CEEEEECCCCEEEEEccCCcc----cc----ccCCceEEEEcCCceEEE
Confidence 775 222334444443 66666654 388889999999999987632 11 345788888885558899
Q ss_pred cCCCeEEEEecCCCcc--eEEec---ccc---CCCcCeEEEEeecCCCCCCeEEEE
Q 018591 277 SADKSIGIWKREAFGK--LCRVG---AIT---GHEGPVKCLQASPNAVGGGFLLYS 324 (353)
Q Consensus 277 ~~dg~i~iw~~~~~~~--~~~~~---~~~---~h~~~v~~~~~~~~~~~~~~~l~s 324 (353)
..||++++|+....+. ...+. .+. +|...|.++.|.++ +.+|++
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~----~~flv~ 230 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP----QDFLAV 230 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS----SEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC----CeEEEE
Confidence 9999999998876552 11120 112 47788999999998 888887
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=4.4e-10 Score=93.74 Aligned_cols=231 Identities=12% Similarity=0.068 Sum_probs=145.3
Q ss_pred eeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE
Q 018591 58 SVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT 135 (353)
Q Consensus 58 ~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 135 (353)
....|+++ ++.+++...++.|+.||.+++..... . ....... ++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~--~-------------------------------~~~~~~~-ia 177 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV--H-------------------------------PGFKGGK-PA 177 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE--E-------------------------------ETCCBCB-CE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe--e-------------------------------ccCCCCc-ee
Confidence 46678887 55555556678999999876642111 0 1111222 77
Q ss_pred EeC--CeEEEecCCC--cEEEEEcCCceeeeec----cccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccc
Q 018591 136 VYN--GLIYSGSWDK--TLKVWRVADLKCLESI----KAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSL 205 (353)
Q Consensus 136 ~~~--~~l~~~~~dg--~v~iwd~~~~~~~~~~----~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 205 (353)
+++ +.|+++..++ .|.+++...+.....+ ......+.++++. ++.|+.+..++.|+.||..++. .
T Consensus 178 ~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-----~ 252 (409)
T 3hrp_A 178 VTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-----V 252 (409)
T ss_dssp ECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-----E
T ss_pred EecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-----E
Confidence 777 6777777765 7999987655433333 2144567888884 4577777778999999998765 1
Q ss_pred eee----eeccC-CceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeec--cc-----------cceeEEEE
Q 018591 206 KGI----LEGHK-DVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACET--KA-----------HEMAVLCV 266 (353)
Q Consensus 206 ~~~----~~~~~-~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~-----------~~~~v~~~ 266 (353)
... ..+.. ..+...++|+|+ +.++++-..++.|+.|+...... ...... .+ ....-.++
T Consensus 253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--~~~g~~~~~g~~dg~~~~~~~~~P~gia~ 330 (409)
T 3hrp_A 253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--WFCGSATQKTVQDGLREEALFAQPNGMTV 330 (409)
T ss_dssp EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--EEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--EEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence 111 11111 112128999995 66666667788999998765311 111100 00 11222444
Q ss_pred EEcCcEEEEec-CCCeEEEEecCCCcceEEeccccCC---------------CcCeEEEEeecCCCCCCeEEEEccCCCe
Q 018591 267 CLVGEFLCSGS-ADKSIGIWKREAFGKLCRVGAITGH---------------EGPVKCLQASPNAVGGGFLLYSGSLDKS 330 (353)
Q Consensus 267 ~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~~~~l~s~~~dg~ 330 (353)
.++|+++++-. .++.|+.|++.++.. ..+.++ -.....++++|+ +.++++-..++.
T Consensus 331 d~dG~lyvad~~~~~~I~~~~~~~G~v----~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~----g~lyVad~~n~~ 402 (409)
T 3hrp_A 331 DEDGNFYIVDGFKGYCLRKLDILDGYV----STVAGQVDVASQIDGTPLEATFNYPYDICYDGE----GGYWIAEAWGKA 402 (409)
T ss_dssp CTTCCEEEEETTTTCEEEEEETTTTEE----EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS----SEEEEEESTTCE
T ss_pred eCCCCEEEEeCCCCCEEEEEECCCCEE----EEEeCCCCCCCcCCCChhceEeCCceEEEEcCC----CCEEEEECCCCe
Confidence 55688888877 899999999776542 222222 245889999999 999999999999
Q ss_pred EEEEEcC
Q 018591 331 LRVWWVS 337 (353)
Q Consensus 331 i~iw~~~ 337 (353)
|+.++++
T Consensus 403 Ir~i~~e 409 (409)
T 3hrp_A 403 IRKYAVE 409 (409)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9988763
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.2e-09 Score=87.34 Aligned_cols=220 Identities=10% Similarity=0.046 Sum_probs=132.1
Q ss_pred eeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE
Q 018591 58 SVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL 134 (353)
Q Consensus 58 ~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 134 (353)
.-.+..|+ +..+++...++.|..||.+++... .. .....+.++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~-------------------------------~~~~~~~~i 59 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RV-------------------------------TMDAPVSSV 59 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EE-------------------------------ECSSCEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EE-------------------------------eCCCceEEE
Confidence 34456666 345666667889999998876511 00 234568889
Q ss_pred EEeC-CeEEEecCCCcEEEEEcCCceeeeeccc----cCcceEEEEE-eCCeEEEEcC----------CCcEEEEeCCCC
Q 018591 135 TVYN-GLIYSGSWDKTLKVWRVADLKCLESIKA----HDDAVNGLVA-SKGIVYSASA----------DGKIKAWGKELG 198 (353)
Q Consensus 135 ~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~-~~~~l~~~~~----------dg~i~iwd~~~~ 198 (353)
++++ ..++++. ++.|.+||..+++....... ....++.+++ +++.++.++. ...-.+|.+...
T Consensus 60 ~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~ 138 (297)
T 3g4e_A 60 ALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD 138 (297)
T ss_dssp EEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred EECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC
Confidence 9998 4466665 56799999987765332221 1245788888 4444554432 122344444322
Q ss_pred CcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCCCcEEEeecc--ccccc-eeeeeeccccceeEEEEEE--cCcE
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSDGFVMGWEGN--VEIVR-WKLACETKAHEMAVLCVCL--VGEF 272 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~-~~~~~~~~~~~~~v~~~~~--~~~~ 272 (353)
.. ... .......+ +.++|+|+++.++ +.+.++.|.+|++. ++... ......+.........+.. +|++
T Consensus 139 g~----~~~-~~~~~~~p-ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 139 HH----VKK-YFDQVDIS-NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp SC----EEE-EEEEESBE-EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred CC----EEE-Eeeccccc-cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE
Confidence 20 111 22222334 8899999998664 55667889999874 33211 1122222222333444444 5877
Q ss_pred EEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee-cCCCCCCeEEEEc
Q 018591 273 LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS-PNAVGGGFLLYSG 325 (353)
Q Consensus 273 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~l~s~ 325 (353)
.++...++.|..||..+++ .+..+..+...+++++|. |+ ++.|+.+
T Consensus 213 wva~~~~~~v~~~d~~tG~---~~~~i~~p~~~~t~~~f~g~d----~~~L~vt 259 (297)
T 3g4e_A 213 WVACYNGGRVIRLDPVTGK---RLQTVKLPVDKTTSCCFGGKN----YSEMYVT 259 (297)
T ss_dssp EEEEETTTEEEEECTTTCC---EEEEEECSSSBEEEEEEESGG----GCEEEEE
T ss_pred EEEEcCCCEEEEEcCCCce---EEEEEECCCCCceEEEEeCCC----CCEEEEE
Confidence 7777778899999998877 444555566779999998 77 5544433
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.41 E-value=2.1e-09 Score=89.68 Aligned_cols=232 Identities=11% Similarity=0.059 Sum_probs=143.9
Q ss_pred CceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC--cEEEEEcccCccce
Q 018591 17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS--RIRVWKVSRSSENV 90 (353)
Q Consensus 17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~i~~w~~~~~~~~~ 90 (353)
.....|+++ ++++++...++.|++||..++............ . ++++ ++.|+++..++ .|.+++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCce--
Confidence 467889996 777777777899999999888776655443322 3 6776 77888888766 677777765431
Q ss_pred eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee----c
Q 018591 91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES----I 164 (353)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~----~ 164 (353)
...+..... .....+.++++++ ..|+++..++.|+.||..++..... .
T Consensus 207 ~~~~g~~~~--------------------------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~ 260 (409)
T 3hrp_A 207 PTRIGQLGS--------------------------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL 260 (409)
T ss_dssp EEEEEECCT--------------------------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC
T ss_pred eEEeeeccc--------------------------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc
Confidence 111111000 1234556788887 6677777789999999877653322 2
Q ss_pred cccCcce--EEEEEeC--C-eEEEEcCCCcEEEEeCCCCCcccccceeeeecc---------------CCceeeEEEEcC
Q 018591 165 KAHDDAV--NGLVASK--G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGH---------------KDVSLNSVVVSD 224 (353)
Q Consensus 165 ~~~~~~v--~~i~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~ 224 (353)
.++...- ..+++++ + ++++-..++.|+.|+..... ..+.++ ...+ ..++++|
T Consensus 261 ~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-------~~~~g~~~~~g~~dg~~~~~~~~~P-~gia~d~ 332 (409)
T 3hrp_A 261 SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-------EWFCGSATQKTVQDGLREEALFAQP-NGMTVDE 332 (409)
T ss_dssp CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------EEEEECTTCCSCBCEEGGGCBCSSE-EEEEECT
T ss_pred cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-------EEEEeCCCCCCcCCCcccccEeCCC-eEEEEeC
Confidence 2222222 3889854 4 55555678889999876431 111111 1234 8999999
Q ss_pred CCCeEEeec-CCCcEEEeeccccccceeeeee--ccc---------cceeEE--EEEEcCcEEEEecCCCeEEEEec
Q 018591 225 DGKWVYGGG-SDGFVMGWEGNVEIVRWKLACE--TKA---------HEMAVL--CVCLVGEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 225 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~---------~~~~v~--~~~~~~~~l~~~~~dg~i~iw~~ 287 (353)
+|+++++-. .++.|+.|++..+... ..... ..+ .-.... ++.+++.++++-..++.|+.+++
T Consensus 333 dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 333 DGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 999888877 8899999997665211 11110 000 011233 44445677777777888887765
No 217
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.40 E-value=1.5e-10 Score=104.51 Aligned_cols=241 Identities=10% Similarity=-0.017 Sum_probs=141.6
Q ss_pred CccCceEEEEEC--CcEEEEEeCC-----CcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCc--------
Q 018591 14 GHVGSVSSLALC--GEFILSASQG-----KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSR-------- 77 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~-------- 77 (353)
+|...+..++|+ |++||.++.+ ..|++||+.+++.+... .+...+..++|+ .+.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCccccccccc
Confidence 344578888996 8888877654 36999999999876542 122233567786 456777665543
Q ss_pred ------EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC--
Q 018591 78 ------IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD-- 147 (353)
Q Consensus 78 ------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d-- 147 (353)
|++|++.++..... .+...+ .+...+..+.|++ ++|+..+.+
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~-lv~~~~---------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQ-PVFATP---------------------------ELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCE-EEECCT---------------------------TCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred CCCCCEEEEEECCCCchhCE-EEeccC---------------------------CCCeEEEEEEECCCCCEEEEEEEccC
Confidence 77888765542111 111100 2333578889998 567666644
Q ss_pred ---CcEEEEEcCCc--eeeeeccccCcceEEEEE-eCCeEEEEcC----CCcEEEEeCCCCCcccccceeeeeccCCcee
Q 018591 148 ---KTLKVWRVADL--KCLESIKAHDDAVNGLVA-SKGIVYSASA----DGKIKAWGKELGKSHCHSLKGILEGHKDVSL 217 (353)
Q Consensus 148 ---g~v~iwd~~~~--~~~~~~~~~~~~v~~i~~-~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (353)
..|++||+.++ ++...+..+...+....+ .++.|+..+. ++.|.+||+.++. ......+..+ ...+
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~---~~~~~l~~~~-~~~l 366 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST---PRFDTVVPES-KDNL 366 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS---CEEEEEECCC-SSEE
T ss_pred CCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc---cccEEEecCC-CCeE
Confidence 38999999876 314444444444444444 4556665554 3459999987641 0123333333 3344
Q ss_pred eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEE--cCcEEE----EecCCCeEEEEecCCC
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCL--VGEFLC----SGSADKSIGIWKREAF 290 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~----~~~~dg~i~iw~~~~~ 290 (353)
..+.++ ++.++++...|+..++|.+.... .....+.. ....+..+++ +++.++ +....++|++||+.++
T Consensus 367 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g---~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 367 ESVGIA-GNRLFASYIHDAKSQVLAFDLDG---KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEEE-BTEEEEEEEETTEEEEEEEETTS---CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEeCCC---CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 677777 56677888888887777654211 11222222 2445555554 565554 2234588999999876
Q ss_pred c
Q 018591 291 G 291 (353)
Q Consensus 291 ~ 291 (353)
+
T Consensus 443 ~ 443 (741)
T 1yr2_A 443 K 443 (741)
T ss_dssp E
T ss_pred c
Confidence 5
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.40 E-value=3.3e-10 Score=92.13 Aligned_cols=267 Identities=15% Similarity=0.113 Sum_probs=160.6
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccCc-------eeeEEEE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHGD-------GSVKAVV 63 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~-------~~v~~~~ 63 (353)
..+++.+.++.....+ . ++++ |++++.+. .++.|.+||..+++.+..+.... ..-..+.
T Consensus 66 ~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a 143 (386)
T 3sjl_D 66 GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 143 (386)
T ss_dssp TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEE
Confidence 4567777777765555 3 8886 77776665 36789999999999998875321 1234466
Q ss_pred Ee--CCEEEEecC--CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE-eC
Q 018591 64 TV--GNKVFTAHQ--DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV-YN 138 (353)
Q Consensus 64 ~~--~~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~ 138 (353)
++ +++++.+.. ++.|.++|+.+.+ .+..++.. + ...+.. ..
T Consensus 144 ~spDGk~lyVan~~~~~~VsVID~~t~~-----vv~tI~v~-------------------------g----~~~~~P~g~ 189 (386)
T 3sjl_D 144 LTPDGKTLLFYQFSPAPAVGVVDLEGKA-----FKRMLDVP-------------------------D----CYHIFPTAP 189 (386)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTE-----EEEEEECC-------------------------S----EEEEEEEET
T ss_pred EcCCCCEEEEEEcCCCCeEEEEECCCCc-----EEEEEECC-------------------------C----cceeecCCC
Confidence 65 888887753 6899999999886 33333211 0 011111 11
Q ss_pred CeEEEecCCCcEEEEEcCC-ceeeeecccc----CcceE-EEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee
Q 018591 139 GLIYSGSWDKTLKVWRVAD-LKCLESIKAH----DDAVN-GLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE 210 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~----~~~v~-~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 210 (353)
..+++.+.||.+.+.++.+ ++.......+ ..++. ...| .++.++..+.+|.+.+.|..............+.
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccc
Confidence 5677888899999999876 5542211111 12221 2344 3555555777899999999766421111111000
Q ss_pred ------c-cCCceeeEEEEcCCCCeEEeecC----------CCcEEEeeccccccceeeeeecc-ccceeEEEEEEcCc-
Q 018591 211 ------G-HKDVSLNSVVVSDDGKWVYGGGS----------DGFVMGWEGNVEIVRWKLACETK-AHEMAVLCVCLVGE- 271 (353)
Q Consensus 211 ------~-~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~- 271 (353)
+ .... ...++++|+++.++.... .+.|.++|+.+.+ ....+. ++...-..++++++
T Consensus 270 ~~~~~~g~~p~g-~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k----v~~~i~vg~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 270 EAERADGWRPGG-WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE----RLAKFEMGHEIDSINVSQDEKP 344 (386)
T ss_dssp HHHHHTTEEECS-SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----EEEEEEEEEEECEEEECSSSSC
T ss_pred cccccccccCCC-cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe----EEEEEECCCCcceEEECCCCCe
Confidence 0 0111 245788999988887642 2579999999884 333322 23334566677775
Q ss_pred EEEE-ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 272 FLCS-GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 272 ~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
+|++ ...++.|.++|..+++....+.. .+| -+.|.+++|
T Consensus 345 ~ly~tn~~~~~VsViD~~t~k~~~~i~~-~~~---p~~l~~s~d 384 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESGEELRSVNQ-LGH---GPQVITTAD 384 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECC-CCS---SCCEEEECC
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEecC-CCC---CceeEECCc
Confidence 5555 45689999999999884433322 223 344555554
No 219
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.39 E-value=6.3e-09 Score=85.57 Aligned_cols=245 Identities=12% Similarity=0.011 Sum_probs=150.7
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccC-------ceeeEEEE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHG-------DGSVKAVV 63 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~-------~~~v~~~~ 63 (353)
..+++.+.++.....+ .++++ |++++.+. .++.|.+||..+++.+..+... ...-..+.
T Consensus 54 ~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~ 131 (373)
T 2mad_H 54 AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA 131 (373)
T ss_pred CCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceE
Confidence 4566777777755555 78885 88888875 3678999999998888776432 11233566
Q ss_pred Ee--CCEEEEecC--CCcEEEEEcccCccceeEEeec-cccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591 64 TV--GNKVFTAHQ--DSRIRVWKVSRSSENVFRLVDT-LPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN 138 (353)
Q Consensus 64 ~~--~~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 138 (353)
++ +++|+.+.. ++.|.++| .+++ .+.. ++. ...+......+
T Consensus 132 ~spDG~~l~v~n~~~~~~v~viD-~t~~-----~~~~~i~~----------------------------~~~~~~~~~~~ 177 (373)
T 2mad_H 132 NTPNNADLLFFQFAAGPAVGLVV-QGGS-----SDDQLLSS----------------------------PTCYHIHPGAP 177 (373)
T ss_pred ECCCCCEEEEEecCCCCeEEEEE-CCCC-----EEeEEcCC----------------------------CceEEEEeCCC
Confidence 65 888888764 47899999 8775 2222 221 11111111122
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeecc-----ccCcce-EEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIK-----AHDDAV-NGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE 210 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v-~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 210 (353)
..+++.+.||.+.++|. +++...... ....++ ....+ .++.++..+.++.+.+.|+...... ....+.
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~---v~~~~~ 253 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT---NKAPID 253 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce---Eeeeee
Confidence 56677778999999999 777663321 111221 12223 2334444447789999998755311 111111
Q ss_pred c----------cCCceeeEEEEcCCCCeEEeecC----------CCcEEEeeccccccceeeeeecc-ccceeEEEEEEc
Q 018591 211 G----------HKDVSLNSVVVSDDGKWVYGGGS----------DGFVMGWEGNVEIVRWKLACETK-AHEMAVLCVCLV 269 (353)
Q Consensus 211 ~----------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 269 (353)
. .... ...++++|+++.+++... ++.|.++|..+.+ ....+. +....-..++++
T Consensus 254 ~~~~~~~~~~~~p~g-~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~----vv~~i~~g~~p~~i~~s~D 328 (373)
T 2mad_H 254 ALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----TSSQISLGHDVDAISVAQD 328 (373)
T ss_pred ecCCcccccceecCc-eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE----EEEEEECCCCcCeEEECCC
Confidence 0 0111 144789999988877643 3579999998873 323322 233455667777
Q ss_pred Cc-EEEEec-CCCeEEEEecCCCcc
Q 018591 270 GE-FLCSGS-ADKSIGIWKREAFGK 292 (353)
Q Consensus 270 ~~-~l~~~~-~dg~i~iw~~~~~~~ 292 (353)
|+ +++++. .++.|.++|..+++.
T Consensus 329 g~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 329 GGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCeEEEEEcCCCCeEEEEECCCCCE
Confidence 88 777776 589999999999874
No 220
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.37 E-value=1.2e-08 Score=81.46 Aligned_cols=232 Identities=12% Similarity=0.131 Sum_probs=146.8
Q ss_pred CceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceE
Q 018591 55 GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS 132 (353)
Q Consensus 55 ~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 132 (353)
......+++++ +...++...++.|.+|+.. +... .. .++ .....+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---~~-~~~---------------------------~~~~~~~ 65 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---EF-EVP---------------------------TPDAKVM 65 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---EE-ECS---------------------------STTCCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---EE-ECC---------------------------CCCCcce
Confidence 34567788887 5566666567899999977 4311 10 010 2235677
Q ss_pred EEEEeC--CeEEEecCCCcEEEEEcCCceeee-eccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCccccccee
Q 018591 133 CLTVYN--GLIYSGSWDKTLKVWRVADLKCLE-SIKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 133 ~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
++++.+ ..+++...++.|..+|.. ++... .+......+.++++ +++ .+++...++.|..+|.. ++ ...
T Consensus 66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-----~~~ 138 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-----IYE 138 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----EEE
T ss_pred eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-----EEE
Confidence 888887 444444557889999987 54432 22223466888888 344 44455557899999987 44 221
Q ss_pred e-eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEE
Q 018591 208 I-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGI 284 (353)
Q Consensus 208 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 284 (353)
. .......+ ..+++.+++++.++...++.|..++. .+... ..........+..+.. ++++.++....+.|.+
T Consensus 139 ~~~~~~~~~~-~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 139 YDLPNKGSYP-AFITLGSDNALWFTENQNNSIGRITN-TGKLE---EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp EECSSTTCCE-EEEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred ccCCCCCCCc-eeEEECCCCCEEEEecCCCeEEEECC-CCcEE---EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 1 22223334 89999999997777777888999998 33211 1112222334555555 4777776667788999
Q ss_pred EecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 285 WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 285 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
|+. +++.. .. .+..+...+.+++++++ +++.++...++.|..|+..
T Consensus 214 ~~~-~g~~~-~~-~~~~~~~~~~~i~~d~~----g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 214 ITT-TGEIS-EY-DIPTPNARPHAITAGKN----SEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECT-TCCEE-EE-ECSSTTCCEEEEEECST----TCEEEEETTTTEEEEECTT
T ss_pred EcC-CCcEE-EE-ECCCCCCCceEEEECCC----CCEEEeccCCCeEEEECCC
Confidence 998 33321 11 22334567899999998 8877777777899999873
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.33 E-value=7.9e-09 Score=82.49 Aligned_cols=220 Identities=14% Similarity=0.141 Sum_probs=129.5
Q ss_pred eeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591 12 LSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 12 l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~ 86 (353)
+..+..---+..|+ +.++++...++.|..||..+++.. .+. ....+.+++++ ++ ++.+. ++.|.+||.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCC-EEEEE-CCeEEEEECCCC
Confidence 34444455677775 567777778899999999877653 333 24578889987 55 44444 567999998766
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecC----------CCcEEEEEc
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSW----------DKTLKVWRV 155 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~----------dg~v~iwd~ 155 (353)
... .+...... .....++.+.+++ ..+..++. ...-.+|.+
T Consensus 84 ~~~---~~~~~~~~-------------------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~ 135 (297)
T 3g4e_A 84 SAV---VLATVDND-------------------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSL 135 (297)
T ss_dssp EEE---EEEECCTT-------------------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEE
T ss_pred cEE---EEEecCCC-------------------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEE
Confidence 421 11111000 1123467888888 44554431 122344444
Q ss_pred CC-ceeeeeccccCcceEEEEEeC-C--eEEEEcCCCcEEEEeCC--CCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591 156 AD-LKCLESIKAHDDAVNGLVASK-G--IVYSASADGKIKAWGKE--LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV 229 (353)
Q Consensus 156 ~~-~~~~~~~~~~~~~v~~i~~~~-~--~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 229 (353)
.. ++... +..+....+.++|++ + ++++.+.++.|..||+. ++..........+......+ ..++++++|++.
T Consensus 136 d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p-~g~~~d~~G~lw 213 (297)
T 3g4e_A 136 FPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIP-DGMCIDAEGKLW 213 (297)
T ss_dssp CTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEE-EEEEEBTTSCEE
T ss_pred ECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCC-CeeEECCCCCEE
Confidence 32 33322 223344567899943 3 44566778899999873 44311111112222223344 889999999888
Q ss_pred EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc
Q 018591 230 YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV 269 (353)
Q Consensus 230 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 269 (353)
++....+.|..||..++ +....+..+...+.++++.
T Consensus 214 va~~~~~~v~~~d~~tG----~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 214 VACYNGGRVIRLDPVTG----KRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEEETTTEEEEECTTTC----CEEEEEECSSSBEEEEEEE
T ss_pred EEEcCCCEEEEEcCCCc----eEEEEEECCCCCceEEEEe
Confidence 77777888999999876 3333344444456666664
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=4.4e-09 Score=84.33 Aligned_cols=228 Identities=9% Similarity=0.024 Sum_probs=132.0
Q ss_pred eEEeccCceeeEEEEEe--CC-EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591 49 FTKFGHGDGSVKAVVTV--GN-KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI 125 (353)
Q Consensus 49 ~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (353)
+..+...........|+ ++ .+++...++.|..|+.. +.. ..+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~---------------------------------~~~~ 82 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV---------------------------------DVLL 82 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE---------------------------------EEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE---------------------------------EEEe
Confidence 33343344455677776 55 56777788899999873 331 1111
Q ss_pred ecCCceEEEEEeC-CeEEEec-CCCcEEEEEcCCceeeeeccc----cCcceEEEEE-eCCeEEE-----EcC-------
Q 018591 126 EHADSISCLTVYN-GLIYSGS-WDKTLKVWRVADLKCLESIKA----HDDAVNGLVA-SKGIVYS-----ASA------- 186 (353)
Q Consensus 126 ~~~~~i~~~~~~~-~~l~~~~-~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~-~~~~l~~-----~~~------- 186 (353)
.+...+..+.+++ ..++++. .++.|..|+.. ++....... ....+..+++ +++.++. +..
T Consensus 83 ~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~ 161 (305)
T 3dr2_A 83 DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCP 161 (305)
T ss_dssp ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCC
T ss_pred CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccc
Confidence 3445678899988 4455554 45789999975 543222111 1234667888 4444444 332
Q ss_pred ------CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC------CcEEEeeccccccce-eee
Q 018591 187 ------DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD------GFVMGWEGNVEIVRW-KLA 253 (353)
Q Consensus 187 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~-~~~ 253 (353)
.+.|..+|..+++ ..... ....+ ..++|+|+++.|+.+... +.|.+|++....... ...
T Consensus 162 ~~~~~~~~~v~~~d~~~g~-----~~~~~--~~~~p-~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~ 233 (305)
T 3dr2_A 162 ADPELAHHSVYRLPPDGSP-----LQRMA--DLDHP-NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF 233 (305)
T ss_dssp CCCSSSCEEEEEECSSSCC-----CEEEE--EESSE-EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE
T ss_pred cccccCCCeEEEEcCCCCc-----EEEEe--cCCCC-cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE
Confidence 2567888876665 22222 22334 789999999987776654 689999987542100 111
Q ss_pred eeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCe
Q 018591 254 CETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKS 330 (353)
Q Consensus 254 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~ 330 (353)
.........-.++..+|++ .++..+| |.+|+.. ++ .+..+..+. .+.+++|+|+ ++.|..++.++.
T Consensus 234 ~~~~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~~-g~---~~~~~~~~~-~~~~~~f~~d----~~~L~it~~~~l 299 (305)
T 3dr2_A 234 ASVPDGLPDGFCVDRGGWL-WSSSGTG-VCVFDSD-GQ---LLGHIPTPG-TASNCTFDQA----QQRLFITGGPCL 299 (305)
T ss_dssp ECCSSSCCCSEEECTTSCE-EECCSSE-EEEECTT-SC---EEEEEECSS-CCCEEEECTT----SCEEEEEETTEE
T ss_pred EECCCCCCCeEEECCCCCE-EEecCCc-EEEECCC-CC---EEEEEECCC-ceeEEEEeCC----CCEEEEEcCCeE
Confidence 1111111112344555774 4444444 9999984 44 233333333 5889999987 777777776653
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=107.63 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=103.7
Q ss_pred EECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEE-e-CCEEEEecCCCcEEEEEcccCccceeEEeeccccc
Q 018591 23 ALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT-V-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTT 100 (353)
Q Consensus 23 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~-~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 100 (353)
+.++..+++++.||.|+.||..+|+.+..+.. +.+.+..+ . +..+++++.||.|+.||.++++... ..+..
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-----~~~~~ 78 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-----KLPFT 78 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-----ECSCC
T ss_pred eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-----eeecc
Confidence 44688999999999999999999999988876 33433322 2 5577778899999999998775211 00000
Q ss_pred cceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCe
Q 018591 101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGI 180 (353)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 180 (353)
... . ....++. ...+.+++++.|+.|+.||..+++.+..+..+.. + ..+..++.
T Consensus 79 ~~~-------------------~--~~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~-~~~p~~~~ 132 (369)
T 2hz6_A 79 IPE-------------------L--VQASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-D-SLSPSTSL 132 (369)
T ss_dssp HHH-------------------H--HTTCSCC--------CCCCEEEEEEEEECCC------------------------
T ss_pred Ccc-------------------c--cccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-c-cccccCCE
Confidence 000 0 0011110 0225677888899999999999999888765432 1 11114568
Q ss_pred EEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC---CeEEeecCCCcEEEeeccccccceee
Q 018591 181 VYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG---KWVYGGGSDGFVMGWEGNVEIVRWKL 252 (353)
Q Consensus 181 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~ 252 (353)
+++++.|+.|+.||.++++ ....+.... ....++.++. ..+++++.+|.+..||..+++..++.
T Consensus 133 v~~~~~dg~v~a~d~~tG~-----~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTRE-----LRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EEEEEEEEEEECCCSSSSS-----CCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred EEEEecCCEEEEEECCCCC-----EEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 8899999999999999887 222222111 0222333332 46777889999999999988655543
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.31 E-value=4.4e-13 Score=110.42 Aligned_cols=190 Identities=10% Similarity=-0.019 Sum_probs=104.8
Q ss_pred eCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591 137 YNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD 214 (353)
Q Consensus 137 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 214 (353)
..+.+++++.||.|+.||..+++.+.+++. ..+.+..+ .++ .+++++.||.|+.||..+++ ....+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~-----~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE-----GLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C-----CSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc-----eeeeeeccCc
Confidence 347899999999999999999999988765 34433333 444 67777899999999998876 2222222211
Q ss_pred ceee-EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce
Q 018591 215 VSLN-SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL 293 (353)
Q Consensus 215 ~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 293 (353)
..+. +..+. .+..+++++.++.++.||..+++..+.... +. ....++++..+++++.|+.|+.||.++++..
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS----AF--ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC----CC--cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 1100 11111 345678888899999999999865554322 11 1233457888999999999999999998743
Q ss_pred EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 294 CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 294 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
.... .+. .....+.++... ...+++++.||.|..||..+++.+.+..
T Consensus 154 W~~~---~~~--~~~~~~~~~~~~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNAT---YFD--YAASLPEDDVDY-KMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEE---EEE--ECCBCCCCCTTC-CCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEe---ccc--ccCccccCCccc-cceEEEECCCCEEEEEECCCCcEEEEec
Confidence 3221 111 122223332000 1467778899999999999988766543
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=1.4e-08 Score=82.22 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=126.9
Q ss_pred EEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE
Q 018591 60 KAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV 136 (353)
Q Consensus 60 ~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 136 (353)
....|+ +..+++...++.|..||.+++... .. .....+.++.+
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~-------------------------------~~~~~v~~i~~ 97 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKT---VH-------------------------------ALPFMGSALAK 97 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---EE-------------------------------ECSSCEEEEEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---EE-------------------------------ECCCcceEEEE
Confidence 445666 335566667789999998765411 00 12346788888
Q ss_pred eC-CeEEEecCCCcEEEEEcCCceeeeeccc----cCcceEEEEE-eCCeEEEEcC-------CCcEEEEeCCCCCcccc
Q 018591 137 YN-GLIYSGSWDKTLKVWRVADLKCLESIKA----HDDAVNGLVA-SKGIVYSASA-------DGKIKAWGKELGKSHCH 203 (353)
Q Consensus 137 ~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~-~~~~l~~~~~-------dg~i~iwd~~~~~~~~~ 203 (353)
.+ +.++.++.+ .|.+||..+++....... ....+.++.+ +++.++.++. .+.|..++ +++
T Consensus 98 ~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~---- 170 (326)
T 2ghs_A 98 ISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK---- 170 (326)
T ss_dssp EETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE----
T ss_pred eCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc----
Confidence 88 555556554 499999887765332211 1245788888 4444444443 24555555 333
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeecc--cc-ccce-eeeeeccccceeEEEEEE--cCcEEEEe
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGN--VE-IVRW-KLACETKAHEMAVLCVCL--VGEFLCSG 276 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~-~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~ 276 (353)
... +......+ ..++|+|+++.++. .+.++.|.+|++. ++ .... .....+.........+.. +|++.++.
T Consensus 171 -~~~-~~~~~~~~-~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 171 -VTK-LFADISIP-NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp -EEE-EEEEESSE-EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred -EEE-eeCCCccc-CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 221 22222233 78999999987654 4567899999986 33 2111 111222222233344555 47776666
Q ss_pred cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee-cCCCCCCeEE-EEccCC
Q 018591 277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS-PNAVGGGFLL-YSGSLD 328 (353)
Q Consensus 277 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~l-~s~~~d 328 (353)
..++.|..||. +++ .+..+..+...+++++|+ |+ +..| ++...+
T Consensus 248 ~~~~~v~~~d~-~g~---~~~~i~~~~~~~~~~af~g~d----~~~L~vt~~~~ 293 (326)
T 2ghs_A 248 WGEGAVDRYDT-DGN---HIARYEVPGKQTTCPAFIGPD----ASRLLVTSARE 293 (326)
T ss_dssp ETTTEEEEECT-TCC---EEEEEECSCSBEEEEEEESTT----SCEEEEEEBCT
T ss_pred eCCCEEEEECC-CCC---EEEEEECCCCCcEEEEEecCC----CCEEEEEecCC
Confidence 66788999998 445 333444555679999998 77 6555 444443
No 226
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.29 E-value=1.9e-09 Score=95.61 Aligned_cols=282 Identities=12% Similarity=0.103 Sum_probs=168.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCceeeEEeccCcee-----------eEEEEEeCCEEEEecCCCcEEEEEcccCccceeEE
Q 018591 25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS-----------VKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 93 (353)
.+..++.++.++.|.-+|..+|+.+..+...... -..+.+.++.++.++.|+.|..+|.++++..-...
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 4667778888999999999999999888543211 12344567889999999999999999887321111
Q ss_pred eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecC------CCcEEEEEcCCceeeeecccc
Q 018591 94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSW------DKTLKVWRVADLKCLESIKAH 167 (353)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~ 167 (353)
...... . +.....+ ....+.++++.. +|.|..+|.++++.+.++...
T Consensus 145 ~~~~~~--~---------------------~~~~~~P----~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 197 (668)
T 1kv9_A 145 TTDPAK--P---------------------YSITGAP----RVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV 197 (668)
T ss_dssp CSCTTS--S---------------------CBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred cCCCCC--c---------------------ceecCCC----EEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence 100000 0 0000111 112355666543 589999999999988776421
Q ss_pred ---Cc----------------------------ceEEEEEe--CCeEEEEcCCC-------------------cEEEEeC
Q 018591 168 ---DD----------------------------AVNGLVAS--KGIVYSASADG-------------------KIKAWGK 195 (353)
Q Consensus 168 ---~~----------------------------~v~~i~~~--~~~l~~~~~dg-------------------~i~iwd~ 195 (353)
.. ....+++. .+.++.++.++ .|..+|.
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~ 277 (668)
T 1kv9_A 198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP 277 (668)
T ss_dssp CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred CCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC
Confidence 00 01134553 45777777665 3999999
Q ss_pred CCCCcccccceeeeec--cC------CceeeEEEEcCCCC---eEEeecCCCcEEEeeccccccceeeeee-------cc
Q 018591 196 ELGKSHCHSLKGILEG--HK------DVSLNSVVVSDDGK---WVYGGGSDGFVMGWEGNVEIVRWKLACE-------TK 257 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~--~~------~~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~ 257 (353)
++++ ..-.++. |. ........+..+++ .++.++.+|.++++|..+++..+..... +.
T Consensus 278 ~tG~-----~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 278 DTGK-----LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp TTCC-----EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred CCCc-----eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence 9998 3333332 11 01112222334564 6889999999999999988544221100 00
Q ss_pred ---------------------------ccceeEEEEEEcCcEEEE-----------------------------------
Q 018591 258 ---------------------------AHEMAVLCVCLVGEFLCS----------------------------------- 275 (353)
Q Consensus 258 ---------------------------~~~~~v~~~~~~~~~l~~----------------------------------- 275 (353)
++.-...+++++..++++
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 000001233333333322
Q ss_pred -ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 276 -GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 276 -~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
...+|.|..||+.+++....... ..+.....+... +.+++.++.||.++.||.++++.+...+
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~~~~~t~----gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPY----PTHWNGGTLSTA----GNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEET----TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCccceEEEEeCCCCcEEEEccC----CCCCcCceeEeC----CCEEEEECCcccchhhhhhcChhheEec
Confidence 12358899999999885443322 122333334445 6788889999999999999999887654
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=1.5e-08 Score=90.71 Aligned_cols=239 Identities=10% Similarity=0.013 Sum_probs=139.3
Q ss_pred CccCceEEEEEC--CcEEEE-----EeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCc--------
Q 018591 14 GHVGSVSSLALC--GEFILS-----ASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSR-------- 77 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s-----~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~-------- 77 (353)
+|...+..++|+ |++||- |+.+..|++||+.+++.+... .+......++|+ ++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWLGNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEETTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEeCCCEEEEEEecCccccccccc
Confidence 466678888996 787773 333457999999999876542 111112455665 777887776643
Q ss_pred -----EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee-cCCceEEEEEeC--CeEEEe-c---
Q 018591 78 -----IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE-HADSISCLTVYN--GLIYSG-S--- 145 (353)
Q Consensus 78 -----i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~l~~~-~--- 145 (353)
|++|++.+........ ...+ . |...+..+.+++ ++|+.. +
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v-~~~~---------------------------~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLV-FGAI---------------------------PAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEE-ESCS---------------------------GGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred CCCcEEEEEECCCCcccceEE-EecC---------------------------CCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 8888887654221111 1110 2 344567788888 555432 2
Q ss_pred CCCcEEEEEcCCce-eeeeccccCcceEEEEE-eCCeE-EEEcCC---CcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591 146 WDKTLKVWRVADLK-CLESIKAHDDAVNGLVA-SKGIV-YSASAD---GKIKAWGKELGKSHCHSLKGILEGHKDVSLNS 219 (353)
Q Consensus 146 ~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~-~~~~l-~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (353)
.++.|+++|+.++. ....+..+......... .++.+ +....+ +.|..+|+.++... ....+..+.... .
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~~-~- 331 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA---HWRDLIPERQQV-L- 331 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEECCCSSC-E-
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---ccEEEecCCCCE-E-
Confidence 23589999997763 34444455555444333 44544 444333 67999999876511 123344455544 3
Q ss_pred EEEcCCCCeEEeecCCC---cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCC----CeEEEEecCCC
Q 018591 220 VVVSDDGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSAD----KSIGIWKREAF 290 (353)
Q Consensus 220 ~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d----g~i~iw~~~~~ 290 (353)
.|+++++.|+....++ .|++|++..+. ...........+..+++ +++.++....+ +.++.||+.++
T Consensus 332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 332 -TVHSGSGYLFAEYMVDATARVEQFDYEGKR----VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp -EEEEETTEEEEEEEETTEEEEEEECTTSCE----EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred -EEEEECCEEEEEEEECCeeEEEEEECCCCe----eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 8899888887665544 68889887542 11111112334444444 45555444333 78999998876
Q ss_pred c
Q 018591 291 G 291 (353)
Q Consensus 291 ~ 291 (353)
+
T Consensus 407 ~ 407 (693)
T 3iuj_A 407 A 407 (693)
T ss_dssp C
T ss_pred e
Confidence 5
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=2e-09 Score=87.78 Aligned_cols=262 Identities=11% Similarity=0.077 Sum_probs=150.5
Q ss_pred CceEEEEEC--CcEEEEEe--CCCcEEEEeCCCceeeEEec-------cCceeeEEEEEe-CCEEEEecC------CCcE
Q 018591 17 GSVSSLALC--GEFILSAS--QGKDIIVWQQPDLRMFTKFG-------HGDGSVKAVVTV-GNKVFTAHQ------DSRI 78 (353)
Q Consensus 17 ~~v~~~~~~--~~~l~s~~--~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~-~~~l~s~~~------dg~i 78 (353)
.....|+++ |+++++.. .++.++||.+.+++.. .+. .+-..+..++++ ...|+.+.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 688999996 77887754 2343566655455433 221 234578899998 345555442 4789
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEec---CCCcEEE
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGS---WDKTLKV 152 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~---~dg~v~i 152 (353)
.+||+.+++ .+..+..... ...+...+..+++++ +.+ ++-. .++.|.+
T Consensus 96 ~~~d~~tg~-----~~~~~~~~~~---------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v 149 (343)
T 2qe8_A 96 VAWDTLNNQ-----LSRVIYLPPP---------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIR 149 (343)
T ss_dssp EEEETTTTE-----EEEEEECCTT---------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEE
T ss_pred EEEECCCCe-----EEEEEECChh---------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEE
Confidence 999998765 1111110000 002334557888885 444 4433 5789999
Q ss_pred EEcCCceeeeeccccCcce---EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591 153 WRVADLKCLESIKAHDDAV---NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV 229 (353)
Q Consensus 153 wd~~~~~~~~~~~~~~~~v---~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 229 (353)
||+.+++....+..|.... ..+...+..+.+.+.++.++.|. .. +..++++|+++.|
T Consensus 150 ~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------------~~-~~gia~s~dg~~l 209 (343)
T 2qe8_A 150 VDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------------LG-VNGIVLDAENEWL 209 (343)
T ss_dssp EETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------------CC-EEEEEECTTSCEE
T ss_pred EECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-------------------cc-cceeEeccCCCEE
Confidence 9998888777665542211 11111222444555566654442 11 2789999999988
Q ss_pred EeecCCC-cEEEeecccccc----ceeeee--eccccc--eeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEecccc
Q 018591 230 YGGGSDG-FVMGWEGNVEIV----RWKLAC--ETKAHE--MAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAIT 300 (353)
Q Consensus 230 ~~~~~dg-~i~i~d~~~~~~----~~~~~~--~~~~~~--~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 300 (353)
+.+..++ .+..++...... ...... ...++. ..-.++..+|.++++...++.|.+||..+++ ...+...
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~- 287 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTD- 287 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEEC-
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEEC-
Confidence 8877665 444444321000 000000 001111 1224556668899998899999999985544 2222221
Q ss_pred CCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591 301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSL 331 (353)
Q Consensus 301 ~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i 331 (353)
.+...+.+++|.++ +.++++.+..+.+
T Consensus 288 ~~~~~p~~va~~~~----g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 288 EKLSWTDSFNFGSD----GYLYFDCNQLHHS 314 (343)
T ss_dssp GGGSCEEEEEECTT----SCEEEEECCGGGS
T ss_pred CceecCCeeEECCC----CcEEEEeCccccc
Confidence 13456899999998 8888887755544
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=1.5e-09 Score=88.46 Aligned_cols=274 Identities=9% Similarity=-0.022 Sum_probs=162.4
Q ss_pred CcEEEEEeCCC----cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec----------CCCcEEEEEcccCccc
Q 018591 26 GEFILSASQGK----DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH----------QDSRIRVWKVSRSSEN 89 (353)
Q Consensus 26 ~~~l~s~~~dg----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~~w~~~~~~~~ 89 (353)
...+++-..++ +|.+.|..+++.+.++.....+ .+.++ +++++.+. .++.|.+||+.+.+
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-- 107 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-- 107 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--
Confidence 34445555455 8889999999999998765555 57776 77777775 46899999999887
Q ss_pred eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEE--EEcCCceeeee
Q 018591 90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKV--WRVADLKCLES 163 (353)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~i--wd~~~~~~~~~ 163 (353)
.+..++.... .+.. .......+.++| ++++++.. +..|.+ +|..+ +.+
T Consensus 108 ---vv~~I~v~~~------------------~~~~--~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~ 161 (368)
T 1mda_H 108 ---PIADIELPDA------------------PRFS--VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQL 161 (368)
T ss_dssp ---EEEEEEETTS------------------CSCC--BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEE
T ss_pred ---EEEEEECCCc------------------cccc--cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceE
Confidence 3333221000 0000 001233577777 67777654 467888 88876 344
Q ss_pred ccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCC-----CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591 164 IKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKEL-----GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF 237 (353)
Q Consensus 164 ~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 237 (353)
+.. .+. ..+.. ....+++.+.||.+.+.|+.+ ++... .....+... ..+ . . .+++..++..+. +.
T Consensus 162 i~v-~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~-~~t~~i~vg-~~P-~--~-~~~~~~~~~vs~-~~ 232 (368)
T 1mda_H 162 TKS-ASC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA-QCTGAQNCS-SQA-A--Q-ANYPGMLVWAVA-SS 232 (368)
T ss_dssp EEC-SSC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC-CSCTTSCBC-SCC-E--E-ETTTTEEEECBS-SC
T ss_pred EEC-CCc-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE-EeeeeeeCC-CCc-c--c-cccCCEEEEEcC-CE
Confidence 422 111 11222 333666777899998899876 22000 000011111 112 2 3 555555555555 89
Q ss_pred EEEeeccccccceeeeeec----------cccceeEEEEEEcCcEEEEecC---------CCeEEEEecCCCcceEEecc
Q 018591 238 VMGWEGNVEIVRWKLACET----------KAHEMAVLCVCLVGEFLCSGSA---------DKSIGIWKREAFGKLCRVGA 298 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~ 298 (353)
+.+.|.............+ .........++++++.++++.. ++.+.++|+.+.+ .+..
T Consensus 233 V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---vv~~ 309 (368)
T 1mda_H 233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGP 309 (368)
T ss_dssp CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEEC
T ss_pred EEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---EEEE
Confidence 9999986532111100000 0111122568888877776532 2456699999987 4444
Q ss_pred ccCCCcCeEEEEeecCCCCCCe-EEEEcc-CCCeEEEEEcCCCCCccccc
Q 018591 299 ITGHEGPVKCLQASPNAVGGGF-LLYSGS-LDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 299 ~~~h~~~v~~~~~~~~~~~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~~~ 346 (353)
+.... ....++|+|| ++ ++++.. .++.|.++|+.+.+.+.+..
T Consensus 310 i~vg~-~p~gi~~s~D----g~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 310 ISNGH-DSDAIIAAQD----GASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CEEEE-EECEEEECCS----SSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EECCC-CcceEEECCC----CCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 43322 5889999999 76 566666 59999999999998887665
No 230
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=5.7e-08 Score=86.26 Aligned_cols=285 Identities=14% Similarity=0.141 Sum_probs=160.5
Q ss_pred CCCCceeeeeeCccCc-----------eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCc----eeeE-EEEEeC
Q 018591 3 CKSHRSLAVLSGHVGS-----------VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGD----GSVK-AVVTVG 66 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~-----------v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----~~v~-~~~~~~ 66 (353)
..+|+.+..+...... -..+++.+..++.++.|+.|..+|..+|+.+..+.... ..+. +....+
T Consensus 83 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~ 162 (668)
T 1kv9_A 83 AASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK 162 (668)
T ss_dssp TTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET
T ss_pred CCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEEC
Confidence 4567777666543221 12345566788888999999999999999998875421 1111 112235
Q ss_pred CEEEEecC------CCcEEEEEcccCccceeEEeecccccccee---eeecccceeEeecccceeee--eecCCceEEEE
Q 018591 67 NKVFTAHQ------DSRIRVWKVSRSSENVFRLVDTLPTTKDYL---GKFMKQSNYVQTRRHHKRLW--IEHADSISCLT 135 (353)
Q Consensus 67 ~~l~s~~~------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~ 135 (353)
+.++.+.. +|.|..+|.++++..-... ..+...... ......... ......| .+.......++
T Consensus 163 ~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~--~~~~~p~~~~~~~~~~~~~~~----~~g~~~w~~~~gg~~w~~~a 236 (668)
T 1kv9_A 163 GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY--TVPGDPALPYEHPELREAAKT----WQGDQYWKLGGGGTVWDSMA 236 (668)
T ss_dssp TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE--SSCCCTTSCCSSHHHHHHHTT----CCSSCHHHHCEECCCCSCEE
T ss_pred CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec--ccCCCCCcccccccccccccc----CCccceeeeCCCCccccceE
Confidence 66666543 5899999999887321111 101000000 000000000 0000000 01222223466
Q ss_pred EeC--CeEEEecCCC-------------------cEEEEEcCCceeeeeccc--cC-------cceE--EEEEeCC---e
Q 018591 136 VYN--GLIYSGSWDK-------------------TLKVWRVADLKCLESIKA--HD-------DAVN--GLVASKG---I 180 (353)
Q Consensus 136 ~~~--~~l~~~~~dg-------------------~v~iwd~~~~~~~~~~~~--~~-------~~v~--~i~~~~~---~ 180 (353)
+++ +.++.++.++ .|..+|.++++.+..++. |. .+.. .+.+.+. .
T Consensus 237 ~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~ 316 (668)
T 1kv9_A 237 YDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKV 316 (668)
T ss_dssp EETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEE
T ss_pred EcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEE
Confidence 766 7777777665 499999999999887754 21 2222 2223222 5
Q ss_pred EEEEcCCCcEEEEeCCCCCcccccce------eeeeccCCc------------------------eeeEEEEcCCCCeEE
Q 018591 181 VYSASADGKIKAWGKELGKSHCHSLK------GILEGHKDV------------------------SLNSVVVSDDGKWVY 230 (353)
Q Consensus 181 l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~------------------------~v~~~~~~~~~~~l~ 230 (353)
++.++.+|.++++|..+++....... ..+...... ....++++|+...++
T Consensus 317 v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~y 396 (668)
T 1kv9_A 317 LMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVY 396 (668)
T ss_dssp EEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEE
T ss_pred EEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEE
Confidence 88999999999999999873200000 000000000 002367777766555
Q ss_pred ee------------------------------------cCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591 231 GG------------------------------------GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC 274 (353)
Q Consensus 231 ~~------------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 274 (353)
+. ..+|.|..||..+++..++....... ....+...+.+++
T Consensus 397 v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~---~~~~~~t~gg~vf 473 (668)
T 1kv9_A 397 IPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHW---NGGTLSTAGNLVF 473 (668)
T ss_dssp EEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSC---CCCEEEETTTEEE
T ss_pred EeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCC---cCceeEeCCCEEE
Confidence 31 13478999999998766655432211 1134455688999
Q ss_pred EecCCCeEEEEecCCCcceEEe
Q 018591 275 SGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 275 ~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
.++.|+.++.||.++++.+...
T Consensus 474 ~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp EECTTSEEEEEETTTCCEEEEE
T ss_pred EECCcccchhhhhhcChhheEe
Confidence 9999999999999999854443
No 231
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.20 E-value=2.3e-07 Score=84.63 Aligned_cols=286 Identities=12% Similarity=0.129 Sum_probs=174.2
Q ss_pred cCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEecc-------CceeeEEEEEe-CCEEEEecCCCcEEEEEcccC
Q 018591 16 VGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGH-------GDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 16 ~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~ 86 (353)
...|.++..+ ...|..|+.++-+..||..+++....... ....|.++..+ ...|..|+.+ -|.+|+..++
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~ 292 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD 292 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC
Confidence 4568888875 44556666555599999877665433221 13568999887 5567777666 5888887665
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeecc
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIK 165 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~ 165 (353)
.. ......+.... .-....|.++...+ +.+..|+.++-|..|+..+........
T Consensus 293 ~~---~~~~~~~~~~~----------------------~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~ 347 (795)
T 4a2l_A 293 SF---ASYSSNPVENG----------------------SLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRN 347 (795)
T ss_dssp EE---EEECCCTTSTT----------------------SCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECC
T ss_pred eE---EEEecCCCCCC----------------------CCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcC
Confidence 41 11111000000 01345789998888 888899988889999876544322111
Q ss_pred ------ccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee-------ccCCceeeEEEEcCCCCeEEe
Q 018591 166 ------AHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE-------GHKDVSLNSVVVSDDGKWVYG 231 (353)
Q Consensus 166 ------~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~ 231 (353)
.....|.++.. .++.+..|+.++-|..||..++. ...... .-....|.+++..++++.|..
T Consensus 348 ~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi 422 (795)
T 4a2l_A 348 IPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR-----FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI 422 (795)
T ss_dssp CTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC-----EEEECCC------CCSCSCEEEEEEETTTTEEEE
T ss_pred CCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc-----EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE
Confidence 12456888888 56688889988889999988765 221111 111234588888888875667
Q ss_pred ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccc----cCCCcCe
Q 018591 232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAI----TGHEGPV 306 (353)
Q Consensus 232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~h~~~v 306 (353)
|+.++-+.+||..++................+.++..+ ...|..|+.+ -+.+||..+++ ....... .-....|
T Consensus 423 gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~i 500 (795)
T 4a2l_A 423 GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRS-FTTIEKEKDGTPVVSKQI 500 (795)
T ss_dssp EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTE-EEECCBCTTCCBCCCCCE
T ss_pred EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCe-EEEccccccccccCCceE
Confidence 77766799999887632111100001223467777776 2344555554 48889987653 2222111 1123578
Q ss_pred EEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 307 KCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 307 ~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
.++...++ +.+.+... + -|..|+..+.+
T Consensus 501 ~~i~~d~~----g~lWigt~-~-Gl~~~~~~~~~ 528 (795)
T 4a2l_A 501 TTLFRDSH----KRLWIGGE-E-GLSVFKQEGLD 528 (795)
T ss_dssp EEEEECTT----CCEEEEES-S-CEEEEEEETTE
T ss_pred EEEEECCC----CCEEEEeC-C-ceEEEeCCCCe
Confidence 99988887 76665554 4 47788876544
No 232
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.19 E-value=1.9e-08 Score=83.41 Aligned_cols=250 Identities=14% Similarity=0.093 Sum_probs=151.5
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccC-------ceeeEEEE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHG-------DGSVKAVV 63 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~-------~~~v~~~~ 63 (353)
..+++.+.++..-..+ .++++ +++|+.+. .++.|.++|..+++.+..+... ...-..+.
T Consensus 106 ~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~ 183 (426)
T 3c75_H 106 GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNA 183 (426)
T ss_dssp TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEE
Confidence 4567777777755556 78886 77777665 4679999999999998877532 11233456
Q ss_pred Ee--CCEEEEecC--CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-
Q 018591 64 TV--GNKVFTAHQ--DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN- 138 (353)
Q Consensus 64 ~~--~~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 138 (353)
++ +++++.+.. ++.|.+.|+.+.+ .+..++.. . ...+....
T Consensus 184 ~spDGk~lyV~n~~~~~~VsVID~~t~k-----vv~~I~v~----------------------------g-~~~~~p~g~ 229 (426)
T 3c75_H 184 LTPDNKNLLFYQFSPAPAVGVVDLEGKT-----FDRMLDVP----------------------------D-CYHIFPASP 229 (426)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTE-----EEEEEECC----------------------------S-EEEEEEEET
T ss_pred EcCCCCEEEEEecCCCCeEEEEECCCCe-----EEEEEEcC----------------------------C-ceeeccCCC
Confidence 65 788888764 5789999998876 33333210 0 01111111
Q ss_pred CeEEEecCCCcEEEEEcCCceeeee----ccccCcce-EEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee-
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLES----IKAHDDAV-NGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE- 210 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v-~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 210 (353)
..+++.+.||.+.+.+..+++.... +.....++ ..+.+ .++.++..+..+.+.+.|................
T Consensus 230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~ 309 (426)
T 3c75_H 230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTE 309 (426)
T ss_dssp TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCT
T ss_pred cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccc
Confidence 5566667788888888865554421 21112221 12333 3345555567889999998655411100000000
Q ss_pred -----c-cCCceeeEEEEcCCCCeEEeecC----------CCcEEEeeccccccceeeeeeccc-cceeEEEEEEcCc-E
Q 018591 211 -----G-HKDVSLNSVVVSDDGKWVYGGGS----------DGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLVGE-F 272 (353)
Q Consensus 211 -----~-~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~ 272 (353)
+ .... ...++++|+++.+++... ++.|.++|..+.+ ....+.. ....-..+.++++ +
T Consensus 310 ~~i~~g~~p~g-~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k----vv~~I~vg~~P~gia~spDg~~~ 384 (426)
T 3c75_H 310 AERADDWRPGG-WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE----RINKIELGHEIDSINVSQDAEPL 384 (426)
T ss_dssp TTGGGTEEECS-SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----EEEEEEEEEEECEEEECCSSSCE
T ss_pred cccccccccCC-ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe----EEEEEECCCCcCeEEEccCCCEE
Confidence 0 0011 134789999887777642 3579999999884 3333322 2344556677788 7
Q ss_pred EEEec-CCCeEEEEecCCCcce
Q 018591 273 LCSGS-ADKSIGIWKREAFGKL 293 (353)
Q Consensus 273 l~~~~-~dg~i~iw~~~~~~~~ 293 (353)
+++.. .++.|.++|..+++..
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEcCCCCeEEEEECCCCCEE
Confidence 77777 5999999999998843
No 233
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.19 E-value=3.6e-08 Score=85.74 Aligned_cols=281 Identities=9% Similarity=-0.038 Sum_probs=164.6
Q ss_pred CCcEEEEEeC-CCcEEEEeC-CCceeeEEeccCce-----------eeEEEEEeCCEEEEecCCCcEEEEEcccCcccee
Q 018591 25 CGEFILSASQ-GKDIIVWQQ-PDLRMFTKFGHGDG-----------SVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVF 91 (353)
Q Consensus 25 ~~~~l~s~~~-dg~v~vwd~-~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~ 91 (353)
.+..++.++. ++.|.-+|. .+|+.+..+..... .-..+...+..++.++.|+.+..+|..+++..-.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 3566777777 899999999 99999988754321 0123455688899999999999999988873211
Q ss_pred EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecC------CCcEEEEEcCCceeeeecc
Q 018591 92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSW------DKTLKVWRVADLKCLESIK 165 (353)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~ 165 (353)
......+. . +.....++ ...+.+++++. ++.|..+|.++++.+.++.
T Consensus 141 ~~~~~~~~--~---------------------~~~~~~P~----v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 141 VEVCDPKV--G---------------------STLTQAPF----VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EECCCGGG--T---------------------CBCCSCCE----EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ecCCCCCc--c---------------------ceeccCCE----EECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 11110000 0 00011111 12355666654 7999999999999887664
Q ss_pred ccCcc-------------------------------------e-EEEEEe--CCeEEEEcCC----------------Cc
Q 018591 166 AHDDA-------------------------------------V-NGLVAS--KGIVYSASAD----------------GK 189 (353)
Q Consensus 166 ~~~~~-------------------------------------v-~~i~~~--~~~l~~~~~d----------------g~ 189 (353)
..... + ..+++. .+.++.+..+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 32110 0 123442 3466555532 35
Q ss_pred EEEEeCCCCCcccccceeeeecc--C-------CceeeEEEEcCCCC---eEEeecCCCcEEEeeccccccceeeeeecc
Q 018591 190 IKAWGKELGKSHCHSLKGILEGH--K-------DVSLNSVVVSDDGK---WVYGGGSDGFVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 190 i~iwd~~~~~~~~~~~~~~~~~~--~-------~~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 257 (353)
|..+|.++++ ..-.++.. . ..+ .-+...++|+ .++.++.+|.+.++|..+++..+.......
T Consensus 274 v~Ald~~tG~-----~~W~~~~~~~d~~d~~~~~~p-~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 274 IWGRDLDTGM-----AKWGYQKTPHDEWDFAGVNQM-VLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp EEEEETTTCC-----EEEEEESSTTCSSCCCCCCCC-EEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred EEEEecCCCc-----EEEEecCCCCcccccccCCCC-EEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 9999999987 33333211 1 111 1122234674 577889999999999988865544321110
Q ss_pred c---------cce----------------------------eEEEEEEcCcEEEEec-----------------------
Q 018591 258 A---------HEM----------------------------AVLCVCLVGEFLCSGS----------------------- 277 (353)
Q Consensus 258 ~---------~~~----------------------------~v~~~~~~~~~l~~~~----------------------- 277 (353)
. ... ...+++++..++++..
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 0 000 1123344444444332
Q ss_pred --------------CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 278 --------------ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 278 --------------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
.+|.|..||..+++....... ...+....+... +.+++.++.||.|+.||.++++.+.
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~----~~~~~~~~~~t~----gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE----KFAAWGGTLYTK----GGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE----SSCCCSBCEEET----TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cceeccCccccCCCCCCeEEEEECCCCCEEEEecC----CCCccceeEEEC----CCEEEEEcCCCeEEEEECCCCCEEE
Confidence 458899999999885443321 122222222333 4567778999999999999999887
Q ss_pred ccc
Q 018591 344 DSE 346 (353)
Q Consensus 344 ~~~ 346 (353)
+.+
T Consensus 500 ~~~ 502 (571)
T 2ad6_A 500 NFK 502 (571)
T ss_dssp EEE
T ss_pred EEe
Confidence 655
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.19 E-value=4.1e-08 Score=78.63 Aligned_cols=229 Identities=14% Similarity=0.091 Sum_probs=132.2
Q ss_pred eeeeeeCccCceEEEEEC--Cc-EEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591 8 SLAVLSGHVGSVSSLALC--GE-FILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~ 82 (353)
.+..+..+.......+|+ ++ +++++..++.|..|+. +++ ...+..+...+..++++ ++.+++...++.|..|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 344555566677888885 55 7788888899999997 454 34455556678889988 55555545557899998
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEE-----ecC----------
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYS-----GSW---------- 146 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~-----~~~---------- 146 (353)
.+ +.. ..+...... .....+..+.+.+ ..+.. |..
T Consensus 114 ~~-g~~---~~~~~~~~~-------------------------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~ 164 (305)
T 3dr2_A 114 AD-GQA---HLLVGRYAG-------------------------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADP 164 (305)
T ss_dssp TT-SCE---EEEECEETT-------------------------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred CC-CCE---EEEEeccCC-------------------------CccCCCCCEEECCCCCEEEeCcCCCcccccccccccc
Confidence 75 331 111100000 1123456677877 43444 432
Q ss_pred ---CCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCC------CcEEEEeCCCCCcccccceeee-eccCC
Q 018591 147 ---DKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASAD------GKIKAWGKELGKSHCHSLKGIL-EGHKD 214 (353)
Q Consensus 147 ---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~-~~~~~ 214 (353)
.+.|..+|..+++..... .......++++++ .++.+... +.|..|++..... .....+ .....
T Consensus 165 ~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l---~~~~~~~~~~~~ 239 (305)
T 3dr2_A 165 ELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL---HDRRHFASVPDG 239 (305)
T ss_dssp SSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE---EEEEEEECCSSS
T ss_pred ccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc---cCCeEEEECCCC
Confidence 256778887666544332 3345678889433 56666554 7899999875431 011111 11223
Q ss_pred ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCe
Q 018591 215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKS 281 (353)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~ 281 (353)
.+ ..++++++|++. ++..+| |.+|+.... ....+.... .+..+. ++++.|+.++.++.
T Consensus 240 ~p-dgi~~d~~G~lw-v~~~~g-v~~~~~~g~-----~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 240 LP-DGFCVDRGGWLW-SSSGTG-VCVFDSDGQ-----LLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CC-CSEEECTTSCEE-ECCSSE-EEEECTTSC-----EEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred CC-CeEEECCCCCEE-EecCCc-EEEECCCCC-----EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 33 679999999844 444554 999998543 122222112 233344 46777777776653
No 235
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.17 E-value=3.8e-07 Score=83.14 Aligned_cols=288 Identities=11% Similarity=0.097 Sum_probs=173.2
Q ss_pred eEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEee
Q 018591 19 VSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVD 95 (353)
Q Consensus 19 v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 95 (353)
|.++..+ ...|..|+.++-|..||..+++..... ..+...|.++..+ ...+..++.++-+..||..++... ...
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~---~~~ 251 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIK---NYL 251 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEE---EEC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEE---Eee
Confidence 8888885 445666776656999998776654321 1234568888876 666777776656888997665411 111
Q ss_pred ccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeecc-------cc
Q 018591 96 TLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIK-------AH 167 (353)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~ 167 (353)
..+.... .-....|.++...+ +.+..|+.+ -|.+||..+++...... ..
T Consensus 252 ~~~~~~~----------------------~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~ 308 (795)
T 4a2l_A 252 HSPSNPK----------------------SISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLS 308 (795)
T ss_dssp CCTTCTT----------------------SCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCS
T ss_pred cCCCCcc----------------------ccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCC
Confidence 0000000 01235688998887 778888776 58899987765443221 12
Q ss_pred CcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591 168 DDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 168 ~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 246 (353)
...|.++.. .++.+..|+.++-|..|+.................-....|.++...+++. |..|+.++-+..|+..++
T Consensus 309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp SSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTC
T ss_pred CCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCC
Confidence 357889888 666889999888899998765541100000000111223358888888876 555777767999998765
Q ss_pred ccceeeeee-c---cccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccc--cCCCcCeEEEEeecCCCCC
Q 018591 247 IVRWKLACE-T---KAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAI--TGHEGPVKCLQASPNAVGG 318 (353)
Q Consensus 247 ~~~~~~~~~-~---~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~ 318 (353)
......... . ......|.++..+ ++.|..|+.++-|..||..+++. ...... ......|.++...++
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~---- 462 (795)
T 4a2l_A 388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGE---- 462 (795)
T ss_dssp CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSS----
T ss_pred cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCC----
Confidence 321111000 0 0123467777765 44477888877799999887542 122110 023457899988887
Q ss_pred CeEEEEccCCCeEEEEEcCCCC
Q 018591 319 GFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 319 ~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+.+.+... +| +.+|+..+++
T Consensus 463 g~lwigt~-~G-l~~~~~~~~~ 482 (795)
T 4a2l_A 463 GNLWLGTL-SA-LVRFNPEQRS 482 (795)
T ss_dssp SCEEEEES-SC-EEEEETTTTE
T ss_pred CCEEEEec-Cc-eeEEeCCCCe
Confidence 76655544 44 8888876643
No 236
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=1.2e-07 Score=76.71 Aligned_cols=211 Identities=11% Similarity=0.042 Sum_probs=121.6
Q ss_pred eEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591 19 VSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 19 v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 94 (353)
..+.+|+ +.++++...++.|..||..+++... +. ....+.++.++ ...++.++.+ .|.+||.++++.. .+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~---~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT---LH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE---EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE---EE
Confidence 4567775 4577777778999999998876542 32 24568888887 4444445544 4889998766521 11
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecC-------CCcEEEEEcCCceeeeeccc
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSW-------DKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~-------dg~v~iwd~~~~~~~~~~~~ 166 (353)
...+.. .....+..+.+++ ..++.++. .+.|..++ +++... +..
T Consensus 125 ~~~~~~-------------------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~ 176 (326)
T 2ghs_A 125 AELESD-------------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA 176 (326)
T ss_dssp ECSSTT-------------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE
T ss_pred eeCCCC-------------------------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC
Confidence 111000 1123577888888 44454443 24566666 444332 222
Q ss_pred cCcceEEEEEe-CC-eE-EEEcCCCcEEEEeCC--CC-CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEE
Q 018591 167 HDDAVNGLVAS-KG-IV-YSASADGKIKAWGKE--LG-KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMG 240 (353)
Q Consensus 167 ~~~~v~~i~~~-~~-~l-~~~~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 240 (353)
+......++|+ ++ .+ ++.+.++.|.+||+. ++ ..........+......+ ..++++++|.+.++...++.|.+
T Consensus 177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p-~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM-DGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE-EEEEECTTSCEEEEEETTTEEEE
T ss_pred CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCC-CeeEECCCCCEEEEEeCCCEEEE
Confidence 33456788884 33 44 455667899999986 44 311101111122223334 78999999987777766788999
Q ss_pred eeccccccceeeeeeccccceeEEEEEEc
Q 018591 241 WEGNVEIVRWKLACETKAHEMAVLCVCLV 269 (353)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 269 (353)
||.... ....+..+...+.++++.
T Consensus 256 ~d~~g~-----~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 256 YDTDGN-----HIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp ECTTCC-----EEEEEECSCSBEEEEEEE
T ss_pred ECCCCC-----EEEEEECCCCCcEEEEEe
Confidence 998432 222233333446666653
No 237
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.15 E-value=8.2e-08 Score=83.62 Aligned_cols=279 Identities=13% Similarity=0.110 Sum_probs=154.9
Q ss_pred CCCCceeeeeeCccCc---------eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCce----eeE-EEEEeCC-
Q 018591 3 CKSHRSLAVLSGHVGS---------VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDG----SVK-AVVTVGN- 67 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~---------v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~----~v~-~~~~~~~- 67 (353)
.++|+.+..+...... -..+++.+..++.++.|+.|..+|..+|+.+........ .+. +-...+.
T Consensus 85 ~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~ 164 (582)
T 1flg_A 85 AKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDG 164 (582)
T ss_dssp SSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECT
T ss_pred CCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCC
Confidence 4577777766644321 123445677888899999999999999999877654321 111 1112223
Q ss_pred -----EEEEec------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee-----------
Q 018591 68 -----KVFTAH------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI----------- 125 (353)
Q Consensus 68 -----~l~s~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 125 (353)
.++.++ .+|.|..+|.++++..-. .+.....+... ...............|.
T Consensus 165 ~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~-----~~~~~~~~~p~-~~~~~~~~g~~g~~~w~~~~~~~~g~~~ 238 (582)
T 1flg_A 165 KTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM-----RPFVEGHMGRL-NGKDSTVTGDVKAPSWPDDRNSPTGKVE 238 (582)
T ss_dssp TTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE-----EESSTTCEEEE-TTEEEEESSCTTCTTSCBCTTSTTSBCG
T ss_pred cCCcEEEEEeccccccCCCCEEEEEECCCCCEEee-----cCCCccccccc-cCcccccccccccccCCCcccccccccc
Confidence 666665 378999999988873221 11110000000 00000000000000000
Q ss_pred ----ecCCceEEEEEeC--CeEEEecC--------------------C----CcEEEEEcCCceeeeeccc--cC-----
Q 018591 126 ----EHADSISCLTVYN--GLIYSGSW--------------------D----KTLKVWRVADLKCLESIKA--HD----- 168 (353)
Q Consensus 126 ----~~~~~i~~~~~~~--~~l~~~~~--------------------d----g~v~iwd~~~~~~~~~~~~--~~----- 168 (353)
+....-..+++++ ++++.+.. | +.|..+|..+++.+..++. |.
T Consensus 239 ~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~ 318 (582)
T 1flg_A 239 SWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFS 318 (582)
T ss_dssp GGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCccccc
Confidence 0000112345555 56665542 2 6899999999999887643 21
Q ss_pred ---cceEEEEE--eCC----eEEEEcCCCcEEEEeCCCCCcccccceeeeeccC------------Cc------------
Q 018591 169 ---DAVNGLVA--SKG----IVYSASADGKIKAWGKELGKSHCHSLKGILEGHK------------DV------------ 215 (353)
Q Consensus 169 ---~~v~~i~~--~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------------~~------------ 215 (353)
.++. +.. .++ .++.++.+|.++++|.++++.. ....... ..
T Consensus 319 ~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l-----w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 392 (582)
T 1flg_A 319 GNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ-----NAFPFVDNITWASHIDLKTGRPVEREGQRPPLP 392 (582)
T ss_dssp CCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE-----EEEESSSCCCSEEEECTTTCCEEECTTCSCCCC
T ss_pred CCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEe-----cccccccCccccccccccCCCEeEccccCCccc
Confidence 1221 121 122 6788999999999999988732 1111000 00
Q ss_pred --------------------eeeEEEEcCCCCeEEeec---------------------------------CCCcEEEee
Q 018591 216 --------------------SLNSVVVSDDGKWVYGGG---------------------------------SDGFVMGWE 242 (353)
Q Consensus 216 --------------------~v~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d 242 (353)
....++++|+...+++.. .+|.|..||
T Consensus 393 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D 472 (582)
T 1flg_A 393 EPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMD 472 (582)
T ss_dssp CTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEEC
T ss_pred cccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEE
Confidence 002456777655554432 357899999
Q ss_pred ccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591 243 GNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
+.+++..++......... ..+...+.+++.|+.||.++.||.++++.+...
T Consensus 473 ~~tG~~~W~~~~~~~~~~---g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 473 PVSGKVVWEHKEHLPLWA---GVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp TTTCCEEEEEEESSCCCS---CCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEecCCCCCcc---cceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 999876666543222111 123345778888999999999999999955443
No 238
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.14 E-value=3.5e-07 Score=79.64 Aligned_cols=264 Identities=10% Similarity=0.067 Sum_probs=144.7
Q ss_pred EEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCc----eeeE-EEEEeCCEEEEecC------CCcEEEEEcccCccce
Q 018591 22 LALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGD----GSVK-AVVTVGNKVFTAHQ------DSRIRVWKVSRSSENV 90 (353)
Q Consensus 22 ~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----~~v~-~~~~~~~~l~s~~~------dg~i~~w~~~~~~~~~ 90 (353)
+++.+..++.++.|+.|..+|..+|+.+....... ..+. +....+..++.++. +|.|..+|.++++..-
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 45567788888999999999999999988764321 0121 11224666776665 7899999999887321
Q ss_pred eEEeecccccccee-eeecccceeEee-cccceeee-----e-ecCCceEEEEEeC--CeEEEecCC-------------
Q 018591 91 FRLVDTLPTTKDYL-GKFMKQSNYVQT-RRHHKRLW-----I-EHADSISCLTVYN--GLIYSGSWD------------- 147 (353)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~-----~-~~~~~i~~~~~~~--~~l~~~~~d------------- 147 (353)
... ..+...... ...........- .......| . +-...-..+++.+ +.++.+..+
T Consensus 191 ~~~--~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 191 RAF--ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEE--SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEc--cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence 111 100000000 000000000000 00000000 0 0000011234444 455555432
Q ss_pred ---CcEEEEEcCCceeeeecccc----------CcceEEEEE-eCC----eEEEEcCCCcEEEEeCCCCCcccccceeee
Q 018591 148 ---KTLKVWRVADLKCLESIKAH----------DDAVNGLVA-SKG----IVYSASADGKIKAWGKELGKSHCHSLKGIL 209 (353)
Q Consensus 148 ---g~v~iwd~~~~~~~~~~~~~----------~~~v~~i~~-~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 209 (353)
+.|..+|.++++.+..++.. ..++. +.. .++ .++.++.+|.+.++|..+++.. ...
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~-----w~~ 342 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI-----VAE 342 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEE-----EEE
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEE-----eee
Confidence 35999999999988776532 12221 111 133 4677888999999999988732 111
Q ss_pred ecc------------CCce--------------------------eeEEEEcCCCCeEEeec------------------
Q 018591 210 EGH------------KDVS--------------------------LNSVVVSDDGKWVYGGG------------------ 233 (353)
Q Consensus 210 ~~~------------~~~~--------------------------v~~~~~~~~~~~l~~~~------------------ 233 (353)
... ...+ -..++++|+..++++..
T Consensus 343 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 422 (571)
T 2ad6_A 343 KVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQ 422 (571)
T ss_dssp ESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCC
Confidence 100 0000 02467888777666543
Q ss_pred -------------------CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceE
Q 018591 234 -------------------SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLC 294 (353)
Q Consensus 234 -------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 294 (353)
.+|.+..||..+++..++......... ..+...+..++.++.||.|+.||.++++...
T Consensus 423 ~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~---~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 423 FFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG---GTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp CCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS---BCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc---eeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 357899999998866665433211111 1233457778889999999999999998554
Q ss_pred Ee
Q 018591 295 RV 296 (353)
Q Consensus 295 ~~ 296 (353)
..
T Consensus 500 ~~ 501 (571)
T 2ad6_A 500 NF 501 (571)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 239
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.13 E-value=6.6e-08 Score=73.57 Aligned_cols=187 Identities=12% Similarity=0.205 Sum_probs=125.0
Q ss_pred ceeeeeeCccC--ceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCce-eeEEEEEeCCEEE-EecCCCcEEEE
Q 018591 7 RSLAVLSGHVG--SVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG-SVKAVVTVGNKVF-TAHQDSRIRVW 81 (353)
Q Consensus 7 ~~~~~l~~h~~--~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~-s~~~dg~i~~w 81 (353)
+.++++. |.. -...|.|+ +.+.++.+.+|.|+++|+++++.+..+ -... .-..+.+.++.|+ ....++.+.+|
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred EEEEEEc-CCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE
Confidence 4455563 433 34788897 566777788899999999999998887 3222 1234677755544 45578899999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceee
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCL 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 161 (353)
|.++.+ .+.+++. ...-..+++..+.|+.+..++.|.++|..+.+.+
T Consensus 122 D~~Tl~-----~~~ti~~----------------------------~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 122 SGMPPQ-----RERTTRY----------------------------SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp ETTTTE-----EEEEEEC----------------------------SSCCCCEEEETTEEEEECSSSEEEEECTTTCCEE
T ss_pred ECCcCc-----EEEEEeC----------------------------CCceeEEecCCCEEEEECCCCEEEEEcCCCCeEE
Confidence 998876 4444332 1112355566667777777899999999998888
Q ss_pred eeccc--cC---cceEEEEEeCCeEEEEc-CCCcEEEEeCCCCCcccccceeeeec------------cCCceeeEEEEc
Q 018591 162 ESIKA--HD---DAVNGLVASKGIVYSAS-ADGKIKAWGKELGKSHCHSLKGILEG------------HKDVSLNSVVVS 223 (353)
Q Consensus 162 ~~~~~--~~---~~v~~i~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~ 223 (353)
..+.- +. ..++.+.+.++.+++.. .+..|.+.|.++++ ....+.. ....+.+.+|++
T Consensus 169 ~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~-----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d 243 (268)
T 3nok_A 169 GAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGT-----VVGVIDASALTRAVAGQVTNPEAVLNGIAVE 243 (268)
T ss_dssp EEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCB-----EEEEEECHHHHHHHTTTCCCTTCCEEEEEEC
T ss_pred EEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCc-----EEEEEECCCCcccccccccCcCCceEEEEEc
Confidence 77643 22 24567788666665555 57899999999987 3332221 122345899999
Q ss_pred CCCCeEEeec
Q 018591 224 DDGKWVYGGG 233 (353)
Q Consensus 224 ~~~~~l~~~~ 233 (353)
|+++.|++.+
T Consensus 244 p~~~rlfVTG 253 (268)
T 3nok_A 244 PGSGRIFMTG 253 (268)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCEEEEeC
Confidence 9876665544
No 240
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.13 E-value=4.7e-07 Score=78.83 Aligned_cols=288 Identities=11% Similarity=0.061 Sum_probs=152.0
Q ss_pred CCCceeeeeeCccCc-----------eEEEEE--CCcE----EEEEeCCCcEEEEeCCCceeeEEeccCce----eeE-E
Q 018591 4 KSHRSLAVLSGHVGS-----------VSSLAL--CGEF----ILSASQGKDIIVWQQPDLRMFTKFGHGDG----SVK-A 61 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~-----------v~~~~~--~~~~----l~s~~~dg~v~vwd~~~~~~~~~~~~~~~----~v~-~ 61 (353)
.+|+.+..++..... ...+++ .+.. ++.++.|+.|..+|..+|+.+........ .+. +
T Consensus 82 ~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ss 161 (599)
T 1w6s_A 82 DPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIA 161 (599)
T ss_dssp CTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC
T ss_pred CCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecC
Confidence 466766666533211 123455 4444 88888999999999999999877643220 121 1
Q ss_pred EEEeCCEEEEec------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeE------eecccceeeeeecCC
Q 018591 62 VVTVGNKVFTAH------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYV------QTRRHHKRLWIEHAD 129 (353)
Q Consensus 62 ~~~~~~~l~s~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 129 (353)
-...+..++.++ .+|.|+.+|.++++..-..... .+.....+.......... ....-....+..-..
T Consensus 162 P~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~-~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~ 240 (599)
T 1w6s_A 162 PYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT-GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGG 240 (599)
T ss_dssp CEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS-SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCC
T ss_pred CEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC-CCccccccccccccccccccccccccccCCCcceecCCC
Confidence 122356666665 3789999999988732111100 000000000000000000 000000000000000
Q ss_pred ce-EEEEEeC--CeEEEecCC----------------CcEEEEEcCCceeeeeccccC----------cceEEEEEe--C
Q 018591 130 SI-SCLTVYN--GLIYSGSWD----------------KTLKVWRVADLKCLESIKAHD----------DAVNGLVAS--K 178 (353)
Q Consensus 130 ~i-~~~~~~~--~~l~~~~~d----------------g~v~iwd~~~~~~~~~~~~~~----------~~v~~i~~~--~ 178 (353)
.+ ..+++.+ ++++.+..+ +.|..+|.++++.+..++... .++. +... +
T Consensus 241 ~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~ 319 (599)
T 1w6s_A 241 TNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKD 319 (599)
T ss_dssp CCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTT
T ss_pred ccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccC
Confidence 11 1234444 566666554 479999999999887765422 1221 2221 2
Q ss_pred C----eEEEEcCCCcEEEEeCCCCCcccccceee-------eeccCCce--------------------------eeEEE
Q 018591 179 G----IVYSASADGKIKAWGKELGKSHCHSLKGI-------LEGHKDVS--------------------------LNSVV 221 (353)
Q Consensus 179 ~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~--------------------------v~~~~ 221 (353)
+ .++.++.+|.+.++|.++++......... .......+ -..++
T Consensus 320 G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a 399 (599)
T 1w6s_A 320 GKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDS 399 (599)
T ss_dssp SCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCE
T ss_pred CcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCcc
Confidence 3 56778899999999999887321110000 00000000 12456
Q ss_pred EcCCCCeEEee---------------------------------c------CCCcEEEeeccccccceeeeeecccccee
Q 018591 222 VSDDGKWVYGG---------------------------------G------SDGFVMGWEGNVEIVRWKLACETKAHEMA 262 (353)
Q Consensus 222 ~~~~~~~l~~~---------------------------------~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 262 (353)
++|+..++++. + ..|.+..||+.+++..++.........
T Consensus 400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~-- 477 (599)
T 1w6s_A 400 YDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWG-- 477 (599)
T ss_dssp EETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCS--
T ss_pred CCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccC--
Confidence 67665555432 1 347888999998876666543221111
Q ss_pred EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591 263 VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 263 v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
-.+...+.+++.++.||.++.||.++++.+...
T Consensus 478 -g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 478 -GTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp -BCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred -cceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 123445788888999999999999999965444
No 241
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.13 E-value=1.4e-07 Score=71.16 Aligned_cols=191 Identities=13% Similarity=0.131 Sum_probs=127.1
Q ss_pred CCceeeeeeCccC--ceEEEEEC-CcEEEEEeCC--CcEEEEeCCCceeeEEeccCcee-eEEEEEeCCEEE-EecCCCc
Q 018591 5 SHRSLAVLSGHVG--SVSSLALC-GEFILSASQG--KDIIVWQQPDLRMFTKFGHGDGS-VKAVVTVGNKVF-TAHQDSR 77 (353)
Q Consensus 5 ~~~~~~~l~~h~~--~v~~~~~~-~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l~-s~~~dg~ 77 (353)
+.+.++++. |.. -...+.|+ +.+..+.+.+ ..|+.+|+.+++.+..+...... -..+.+.++.|+ ....++.
T Consensus 8 ~~~v~~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 8 GYRVVKRYP-HDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp CEEEEEEEE-CCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE
T ss_pred ceEEEEEcC-CCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCE
Confidence 456677774 543 46689998 4455555554 48999999999999887643322 234566665555 4457889
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCC
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~ 157 (353)
+.++|.++.+ .+.+++.. ..=..++...+.|+.+..++.|.++|..+
T Consensus 87 v~v~D~~tl~-----~~~ti~~~----------------------------~~Gwglt~dg~~L~vSdgs~~l~~iDp~t 133 (243)
T 3mbr_X 87 GFVYDLATLT-----PRARFRYP----------------------------GEGWALTSDDSHLYMSDGTAVIRKLDPDT 133 (243)
T ss_dssp EEEEETTTTE-----EEEEEECS----------------------------SCCCEEEECSSCEEEECSSSEEEEECTTT
T ss_pred EEEEECCcCc-----EEEEEeCC----------------------------CCceEEeeCCCEEEEECCCCeEEEEeCCC
Confidence 9999998876 44444321 12245566666666666789999999999
Q ss_pred ceeeeecccc--C---cceEEEEEeCCeEEEEc-CCCcEEEEeCCCCCcccccceeeee------------ccCCceeeE
Q 018591 158 LKCLESIKAH--D---DAVNGLVASKGIVYSAS-ADGKIKAWGKELGKSHCHSLKGILE------------GHKDVSLNS 219 (353)
Q Consensus 158 ~~~~~~~~~~--~---~~v~~i~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~v~~ 219 (353)
.+.+.+++-. . ..++.+.+.++.+++.. .+..|.+.|.++++ ....+. .....+.+.
T Consensus 134 ~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~-----V~~~idl~~l~~~~~~~~~~~~~vlNG 208 (243)
T 3mbr_X 134 LQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGK-----VVAWIDLQALVPDADALTDSTNDVLNG 208 (243)
T ss_dssp CCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCB-----EEEEEECGGGSTTTTSCCCTTSSCEEE
T ss_pred CeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCC-----EEEEEECCcCccccccccCCcCCceEE
Confidence 8888776432 1 34567777667555554 57899999999987 333222 112335589
Q ss_pred EEEcCCCCeEEeecC
Q 018591 220 VVVSDDGKWVYGGGS 234 (353)
Q Consensus 220 ~~~~~~~~~l~~~~~ 234 (353)
++++|+++.|++.+.
T Consensus 209 IA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 209 IAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEEET
T ss_pred EEEcCCCCEEEEECC
Confidence 999998777666553
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.11 E-value=8.2e-08 Score=73.08 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=127.1
Q ss_pred CceeeeeeCccCc--eEEEEEC-CcEEEEEeCCC--cEEEEeCCCceeeEEeccCcee-eEEEEEeCCEEEEe-cCCCcE
Q 018591 6 HRSLAVLSGHVGS--VSSLALC-GEFILSASQGK--DIIVWQQPDLRMFTKFGHGDGS-VKAVVTVGNKVFTA-HQDSRI 78 (353)
Q Consensus 6 ~~~~~~l~~h~~~--v~~~~~~-~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~-~~dg~i 78 (353)
.+.++++. |... ...|.|+ +.+..+.+.+| .|+++|+++++.+..+...... -..+.+.++.|+.. ..++.+
T Consensus 31 ~~vv~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 31 YQIVHSYP-HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEEE-CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred eEEEEEec-CCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 45566664 4433 4788886 66666777766 8999999999999888654322 23466776666654 467899
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCc
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~ 158 (353)
.++|.++.+ .+.+++.. ..=..+++..+.|+.+..++.|.++|..+.
T Consensus 110 ~v~D~~t~~-----~~~ti~~~----------------------------~eG~glt~dg~~L~~SdGs~~i~~iDp~T~ 156 (262)
T 3nol_A 110 FVWNIRNLR-----QVRSFNYD----------------------------GEGWGLTHNDQYLIMSDGTPVLRFLDPESL 156 (262)
T ss_dssp EEEETTTCC-----EEEEEECS----------------------------SCCCCEEECSSCEEECCSSSEEEEECTTTC
T ss_pred EEEECccCc-----EEEEEECC----------------------------CCceEEecCCCEEEEECCCCeEEEEcCCCC
Confidence 999998876 44443321 111345555666666666788999999998
Q ss_pred eeeeecccc--C---cceEEEEEeCCeEEEEc-CCCcEEEEeCCCCCcccccceeeeec-----------cCCceeeEEE
Q 018591 159 KCLESIKAH--D---DAVNGLVASKGIVYSAS-ADGKIKAWGKELGKSHCHSLKGILEG-----------HKDVSLNSVV 221 (353)
Q Consensus 159 ~~~~~~~~~--~---~~v~~i~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~ 221 (353)
+.+..+.-. . ..++.+.+.++.+++.. .+..|.+.|.++++ ....+.. ....+.+.++
T Consensus 157 ~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~-----V~~~Id~~~L~~~~~~~~~~~~vlNGIA 231 (262)
T 3nol_A 157 TPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGK-----VTGIIDLNGILAEAGPLPSPIDVLNGIA 231 (262)
T ss_dssp SEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCB-----EEEEEECTTGGGGSCSCCSSCCCEEEEE
T ss_pred eEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCc-----EEEEEECCcCccccccccCcCCceEEEE
Confidence 888776432 2 33456777666565555 57899999999987 3333222 1123448999
Q ss_pred EcCCCCeEEeecC
Q 018591 222 VSDDGKWVYGGGS 234 (353)
Q Consensus 222 ~~~~~~~l~~~~~ 234 (353)
++|+++.|++.+.
T Consensus 232 ~dp~~~~lfVTGK 244 (262)
T 3nol_A 232 WDKEHHRLFVTGK 244 (262)
T ss_dssp EETTTTEEEEEET
T ss_pred EcCCCCEEEEECC
Confidence 9998887777654
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.11 E-value=1.4e-07 Score=82.01 Aligned_cols=281 Identities=10% Similarity=-0.005 Sum_probs=162.2
Q ss_pred CCcEEEEEeC-CCcEEEEeC-CCceeeEEeccCcee-----------eEEEEE--eCCE----EEEecCCCcEEEEEccc
Q 018591 25 CGEFILSASQ-GKDIIVWQQ-PDLRMFTKFGHGDGS-----------VKAVVT--VGNK----VFTAHQDSRIRVWKVSR 85 (353)
Q Consensus 25 ~~~~l~s~~~-dg~v~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~--~~~~----l~s~~~dg~i~~w~~~~ 85 (353)
.+..|+.++. ++.|.-+|. .+|+.+..+...... ...+.+ .+.. ++.++.|+.|..+|..+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 3566777777 899999999 999999887543211 123455 4555 88888999999999988
Q ss_pred CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec------CCCcEEEEEcCCce
Q 018591 86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS------WDKTLKVWRVADLK 159 (353)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~------~dg~v~iwd~~~~~ 159 (353)
++..-......... . +.-...+ ....+.+++++ .+|.|+.+|.++++
T Consensus 141 G~~~W~~~~~~~~~--~---------------------~~~~ssP----~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 141 GETVWKVENSDIKV--G---------------------STLTIAP----YVVKDKVIIGSSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp CCEEEEEECCCGGG--T---------------------CBCCSCC----EEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred CCEEEeecCCCCCc--c---------------------ceeecCC----EEECCEEEEEecccccCCCCeEEEEECCCCc
Confidence 87321111100000 0 0000111 11235566665 38999999999999
Q ss_pred eeeeccccCcc-------------------------------------e-EEEEE--eCCeEEEEcCC------------
Q 018591 160 CLESIKAHDDA-------------------------------------V-NGLVA--SKGIVYSASAD------------ 187 (353)
Q Consensus 160 ~~~~~~~~~~~-------------------------------------v-~~i~~--~~~~l~~~~~d------------ 187 (353)
.+.++...... + ..+++ ..+.++.+..+
T Consensus 194 ~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd 273 (599)
T 1w6s_A 194 QVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGD 273 (599)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCC
Confidence 88766432111 0 02233 44567766655
Q ss_pred ----CcEEEEeCCCCCcccccceeeeeccCC---------ceeeEEEEc-CCC---CeEEeecCCCcEEEeeccccccce
Q 018591 188 ----GKIKAWGKELGKSHCHSLKGILEGHKD---------VSLNSVVVS-DDG---KWVYGGGSDGFVMGWEGNVEIVRW 250 (353)
Q Consensus 188 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~ 250 (353)
+.|..+|.++++ ..-.++.... .+ .-+... .+| ..++.++.+|.+.++|.++++..+
T Consensus 274 ~~y~~sv~Ald~~TG~-----~~W~~q~~~~d~wd~d~~~~p-~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 274 NKWTMTIFGRDADTGE-----AKFGYQKTPHDEWDYAGVNVM-MLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp CTTSSEEEEEETTTCC-----EEEEEESSTTCSSCCCCCCCC-EEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccceEEEEeCCCCc-----eeeEeecCCCccccccCCCcc-EEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 379999999987 3333322111 11 112222 467 467788999999999999886555
Q ss_pred eeeeec-----------cc--------------------------cceeEEEEEEcCcEEEEe-----------------
Q 018591 251 KLACET-----------KA--------------------------HEMAVLCVCLVGEFLCSG----------------- 276 (353)
Q Consensus 251 ~~~~~~-----------~~--------------------------~~~~v~~~~~~~~~l~~~----------------- 276 (353)
...... .+ +.-...+++++..++++.
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 432110 00 000011222222222111
Q ss_pred ----------------c------CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591 277 ----------------S------ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 277 ----------------~------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw 334 (353)
+ .+|.|.-||+.+++....... ..+...-..... +.+++.++.||.++.|
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~----~~~~~~g~~~ta----gg~vf~gt~dg~l~A~ 499 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME----RFAVWGGTMATA----GDLVFYGTLDGYLKAR 499 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE----SSCCCSBCEEET----TTEEEEECTTSEEEEE
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC----CCCccCcceEec----CCEEEEECCCCeEEEE
Confidence 1 458899999999885443321 111111112223 5677779999999999
Q ss_pred EcCCCCCccccc
Q 018591 335 WVSKQSSTSDSE 346 (353)
Q Consensus 335 ~~~~~~~~~~~~ 346 (353)
|.++++.+.+.+
T Consensus 500 D~~tG~~lW~~~ 511 (599)
T 1w6s_A 500 DSDTGDLLWKFK 511 (599)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCCEEEEee
Confidence 999999887664
No 244
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=8.4e-07 Score=80.74 Aligned_cols=289 Identities=11% Similarity=0.072 Sum_probs=170.5
Q ss_pred cCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEec--------------cCceeeEEEEEe-CCEEEEecCCCcEE
Q 018591 16 VGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFG--------------HGDGSVKAVVTV-GNKVFTAHQDSRIR 79 (353)
Q Consensus 16 ~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~--------------~~~~~v~~~~~~-~~~l~s~~~dg~i~ 79 (353)
...|.++..+ ...|..|+..+-|.++|..+++...... .....|.++..+ ...|..|+.++-|.
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~ 336 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGIN 336 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEE
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEE
Confidence 3568999886 5567777775678899987665432211 124578888888 56788888788888
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCc
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~ 158 (353)
.++........+.......... .-....|.++...+ +.|..|+.++-|..||..++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~-----------------------~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~ 393 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNES-----------------------SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKR 393 (781)
T ss_dssp EECSSCCSCEEEC----CCCSS-----------------------CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEE
T ss_pred EeCCCCCcceeeccCccccccC-----------------------CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCC
Confidence 8887655421111000000000 01335688898887 78888887777999998765
Q ss_pred eeeeec---cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcCCCCeEEeec
Q 018591 159 KCLESI---KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSDDGKWVYGGG 233 (353)
Q Consensus 159 ~~~~~~---~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~ 233 (353)
+..... ......|.++.. .++.|..|+.++.|..+|..+++ ...... ......|.++...+++.+.+ |+
T Consensus 394 ~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt 467 (781)
T 3v9f_A 394 VAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-----FQIIELEKNELLDVRVFYEDKNKKIWI-GT 467 (781)
T ss_dssp EEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-----EEECCSTTTCCCCEEEEEECTTSEEEE-EE
T ss_pred eEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-----EEEeccCCCCCCeEEEEEECCCCCEEE-EE
Confidence 433211 123467888888 56788888887889999987765 211111 11223358888888876444 44
Q ss_pred CCCcEEEeeccccccceeeeee-ccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccC-CCcCeEEEE
Q 018591 234 SDGFVMGWEGNVEIVRWKLACE-TKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITG-HEGPVKCLQ 310 (353)
Q Consensus 234 ~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~ 310 (353)
.. -+..||..++......... .......+.++..+ ...|..|+.++-+..||..+.+ ........+ ....|.++.
T Consensus 468 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~ 545 (781)
T 3v9f_A 468 HA-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIY 545 (781)
T ss_dssp TT-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEE
T ss_pred CC-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEE
Confidence 44 4888988765321111000 00113567777776 3345556654447788876643 222221111 235689998
Q ss_pred eecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
..++ |.+.++.. +|-|..|+..+++
T Consensus 546 ~d~~----g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 546 RSSK----GQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp ECTT----SCEEEEET-TEEEEESCTTTCC
T ss_pred ECCC----CCEEEEEC-CCceEEECCCCCc
Confidence 8887 77665544 7755778776553
No 245
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.09 E-value=5.5e-08 Score=87.10 Aligned_cols=237 Identities=15% Similarity=0.148 Sum_probs=134.5
Q ss_pred CceeeEEEEEe--CCEEEE-----ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591 55 GDGSVKAVVTV--GNKVFT-----AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127 (353)
Q Consensus 55 ~~~~v~~~~~~--~~~l~s-----~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
|...+..+.|+ +++|+- |+....|++||+++++.... .++ +.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----~~~---------------------------~~ 175 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET----PLK---------------------------DV 175 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE----EEE---------------------------EE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc----ccC---------------------------Cc
Confidence 45577788887 777762 34446799999998862111 000 11
Q ss_pred CCceEEEEEe-CCeEEEecCCC-------------cEEEEEcCCce----eeeeccc-cCcceEEEEEeCC--eE-EEEc
Q 018591 128 ADSISCLTVY-NGLIYSGSWDK-------------TLKVWRVADLK----CLESIKA-HDDAVNGLVASKG--IV-YSAS 185 (353)
Q Consensus 128 ~~~i~~~~~~-~~~l~~~~~dg-------------~v~iwd~~~~~----~~~~~~~-~~~~v~~i~~~~~--~l-~~~~ 185 (353)
....++|+ .+.|+.++.+. .|++|++.+.. .+..... |......+.++++ .+ ++.+
T Consensus 176 --k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~ 253 (693)
T 3iuj_A 176 --KFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAA 253 (693)
T ss_dssp --ESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEE
T ss_pred --eeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEc
Confidence 01233444 35566665553 49999987654 3333333 4455677888443 34 3333
Q ss_pred ---CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCC---CcEEEeecccccc-ceeeeeecc
Q 018591 186 ---ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSD---GFVMGWEGNVEIV-RWKLACETK 257 (353)
Q Consensus 186 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d---g~i~i~d~~~~~~-~~~~~~~~~ 257 (353)
.+..|+++|+.++.. ....+..+.... ... +++++..|+ ....+ +.|..+++..+.. .++. +.
T Consensus 254 ~~~~~~~i~~~d~~~~~~----~~~~l~~~~~~~-~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~---l~ 324 (693)
T 3iuj_A 254 NSTSGNRLYVKDLSQENA----PLLTVQGDLDAD-VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD---LI 324 (693)
T ss_dssp SSSSCCEEEEEETTSTTC----CCEEEECSSSSC-EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EE
T ss_pred cCCCCcEEEEEECCCCCC----ceEEEeCCCCce-EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE---Ee
Confidence 235899999977631 123334444433 333 566665554 44333 5788899887532 1121 22
Q ss_pred ccceeEEEEEEcCcEEEEecC-CC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC----Ce
Q 018591 258 AHEMAVLCVCLVGEFLCSGSA-DK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD----KS 330 (353)
Q Consensus 258 ~~~~~v~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d----g~ 330 (353)
.+...+..++++++.|+.... ++ .|++|++..+. ...+ . ....+.+..+.++|+ ++.|+....+ +.
T Consensus 325 ~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l-~-~p~~~~~~~~~~~~d----~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 325 PERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREV-A-LPGLGSVSGFNGKHD----DPALYFGFENYAQPPT 397 (693)
T ss_dssp CCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEE-C-CSSSSEEEECCCCTT----CSCEEEEEECSSSCCE
T ss_pred cCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEe-e-cCCCceEEeeecCCC----CCEEEEEecCCCCCCE
Confidence 222222288888887776654 43 68899987532 2222 1 123456777888887 5554444333 78
Q ss_pred EEEEEcCCCC
Q 018591 331 LRVWWVSKQS 340 (353)
Q Consensus 331 i~iw~~~~~~ 340 (353)
+..||+.+++
T Consensus 398 l~~~d~~~g~ 407 (693)
T 3iuj_A 398 LYRFEPKSGA 407 (693)
T ss_dssp EEEECTTTCC
T ss_pred EEEEECCCCe
Confidence 9999987765
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.05 E-value=5.9e-07 Score=69.23 Aligned_cols=204 Identities=11% Similarity=0.033 Sum_probs=134.7
Q ss_pred CCceeeeeeCccC--ceEEEEECC-cEEEEE-eC--CCcEEEEeCCCceeeEEeccCc-eeeEEEEEeCCEEEE-ecCCC
Q 018591 5 SHRSLAVLSGHVG--SVSSLALCG-EFILSA-SQ--GKDIIVWQQPDLRMFTKFGHGD-GSVKAVVTVGNKVFT-AHQDS 76 (353)
Q Consensus 5 ~~~~~~~l~~h~~--~v~~~~~~~-~~l~s~-~~--dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~s-~~~dg 76 (353)
+.+.+.++. |.. ....++|++ ..|+.+ +. ++.|++.|+.+++.+..+.... .....+.+.++.|+. .-.++
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~ 86 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCS
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCC
Confidence 456677775 443 368999973 445444 33 5799999999999998875322 223456777666554 45678
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcC
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~ 156 (353)
.+.++|..+.+ .+..++. + ...-..++...+.++++..++.|.++|..
T Consensus 87 ~v~viD~~t~~-----v~~~i~~--------------------------g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~ 134 (266)
T 2iwa_A 87 IGFIYDRRTLS-----NIKNFTH--------------------------Q-MKDGWGLATDGKILYGSDGTSILYEIDPH 134 (266)
T ss_dssp EEEEEETTTTE-----EEEEEEC--------------------------C-SSSCCEEEECSSSEEEECSSSEEEEECTT
T ss_pred EEEEEECCCCc-----EEEEEEC--------------------------C-CCCeEEEEECCCEEEEECCCCeEEEEECC
Confidence 99999998765 3333322 1 01113466666566666678999999999
Q ss_pred Cceeeeecccc--C---cceEEEEEeCCeEEEEc-CCCcEEEEeCCCCCcccccceeeeecc------------CCceee
Q 018591 157 DLKCLESIKAH--D---DAVNGLVASKGIVYSAS-ADGKIKAWGKELGKSHCHSLKGILEGH------------KDVSLN 218 (353)
Q Consensus 157 ~~~~~~~~~~~--~---~~v~~i~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~v~ 218 (353)
+.+.+..+.-. . ..++.+.+.++.+++.. .++.|.+.|..+++ ....+... .....+
T Consensus 135 t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~-----V~~~I~~~g~~~~~~~~~~~~~~v~n 209 (266)
T 2iwa_A 135 TFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGT-----LLGWILLPNLRKKLIDEGFRDIDVLN 209 (266)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCC-----EEEEEECHHHHHHHHHTTCTTCCCEE
T ss_pred CCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCc-----EEEEEECCCcccccccccccccCceE
Confidence 98887776422 1 23667777666555554 57899999999987 44443321 112348
Q ss_pred EEEEcCCCCe-EEeecCCCcEEEeecccc
Q 018591 219 SVVVSDDGKW-VYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 219 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~ 246 (353)
.++++|+++. ++++...+.+...++...
T Consensus 210 GIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 210 GIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999765 555667788888887654
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.05 E-value=6.6e-07 Score=68.97 Aligned_cols=200 Identities=11% Similarity=0.006 Sum_probs=130.2
Q ss_pred ceEEEEEeC-CeEEEecC---CCcEEEEEcCCceeeeeccccC-cceEEEEEeCCeE-EEEcCCCcEEEEeCCCCCcccc
Q 018591 130 SISCLTVYN-GLIYSGSW---DKTLKVWRVADLKCLESIKAHD-DAVNGLVASKGIV-YSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 130 ~i~~~~~~~-~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
....+.+++ +.|+.++. ++.|.++|+.+++.+..+.-.. .....+++.++.+ ++.-.++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~---- 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS---- 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE----
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc----
Confidence 357899998 66666543 5899999999999888864322 2234566666644 455568899999999887
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEE-cCcEEEEecCCCe
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCL-VGEFLCSGSADKS 281 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~ 281 (353)
....+..... ....+++|++.++++..++.|.++|..+.+..........+.. .....+.+ ++...+....++.
T Consensus 98 -v~~~i~~g~~---~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 98 -NIKNFTHQMK---DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDC 173 (266)
T ss_dssp -EEEEEECCSS---SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSE
T ss_pred -EEEEEECCCC---CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCe
Confidence 4555543311 2344666888888777889999999988643322222111111 11233333 5655555557899
Q ss_pred EEEEecCCCcceEEecc--cc------C--CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 282 IGIWKREAFGKLCRVGA--IT------G--HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~--~~------~--h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
|.+.|..+++....+.. +. . -....+.|+|+|+ +..+++++...+++.+-++.+..
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~---~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE---NKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT---TTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC---CCEEEEECCCCCeEEEEEEeccc
Confidence 99999999885433321 10 0 1135689999998 24677778788999999887654
No 248
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=4.7e-06 Score=75.88 Aligned_cols=289 Identities=9% Similarity=0.034 Sum_probs=169.8
Q ss_pred CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEec-------cCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCc
Q 018591 17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFG-------HGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
..|.++..+ ...|..|+.++-|..||..+++...... .....|.++..+ ...|..++.+ -+.+||..++.
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~ 241 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTET 241 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTE
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCc
Confidence 458888875 5566667777669999987765433211 113468888887 4556666665 58888876654
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeec--
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESI-- 164 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~-- 164 (353)
...+......+ .......|.++...+ +.+..|+..+-|.++|..+.+.....
T Consensus 242 ~~~~~~~~~~~-------------------------~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~ 296 (781)
T 3v9f_A 242 FTNFHNNPGNI-------------------------HGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQI 296 (781)
T ss_dssp EEC------------------------------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC--------
T ss_pred EEEEEcCCCcc-------------------------ccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeecc
Confidence 11110000000 001235688888877 78888888667889998765432211
Q ss_pred ------------cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCccccccee---eeeccCCceeeEEEEcCCCCe
Q 018591 165 ------------KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKG---ILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 165 ------------~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~ 228 (353)
......|.++.. .++.+..|+.++-|..++............. ....-....|.++...+++.
T Consensus 297 ~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~- 375 (781)
T 3v9f_A 297 RFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK- 375 (781)
T ss_dssp -CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-
T ss_pred ccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-
Confidence 112457888888 5668889998888999998765411100000 00111223458888888776
Q ss_pred EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~ 307 (353)
|..|+.++-+..|+..++..... ..........|.++..+ ...|..|+.++-+..++..+++ .............|.
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~ 453 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYN-KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-FQIIELEKNELLDVR 453 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-EEECCSTTTCCCCEE
T ss_pred EEEEeCCCcEEEEECCCCeEEEc-cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-EEEeccCCCCCCeEE
Confidence 55566555688898876521111 00112234567888776 4556667777779999987653 212211012345799
Q ss_pred EEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 308 ~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
++...++ +.+.+.. .+ -|..|+..+++
T Consensus 454 ~i~~d~~----g~lwigt-~~-Gl~~~~~~~~~ 480 (781)
T 3v9f_A 454 VFYEDKN----KKIWIGT-HA-GVFVIDLASKK 480 (781)
T ss_dssp EEEECTT----SEEEEEE-TT-EEEEEESSSSS
T ss_pred EEEECCC----CCEEEEE-CC-ceEEEeCCCCe
Confidence 9988887 7655544 44 58888877654
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.03 E-value=3.6e-07 Score=69.59 Aligned_cols=185 Identities=9% Similarity=-0.014 Sum_probs=116.2
Q ss_pred eEEEEEeC-CeEEEecCCC--cEEEEEcCCceeeeeccccCcc-eEEEEEeCCeEEE-EcCCCcEEEEeCCCCCcccccc
Q 018591 131 ISCLTVYN-GLIYSGSWDK--TLKVWRVADLKCLESIKAHDDA-VNGLVASKGIVYS-ASADGKIKAWGKELGKSHCHSL 205 (353)
Q Consensus 131 i~~~~~~~-~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~ 205 (353)
...+.|+. .++.+.+.+| .|+.+|+.+++.+.++...... --.++..++.++. .-.++.+.+||..+.+ .
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~-----~ 119 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR-----Q 119 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC-----E
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc-----E
Confidence 36777877 4455555555 8999999999998887543322 2346665665444 4458899999999987 5
Q ss_pred eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEE-cCcEEEEecCCCeEE
Q 018591 206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCL-VGEFLCSGSADKSIG 283 (353)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~i~ 283 (353)
...+..... ...++++++.|+.+..++.|.++|..+.+..........+.. ..+..+.+ +|...+..-.++.|.
T Consensus 120 ~~ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 120 VRSFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIV 195 (262)
T ss_dssp EEEEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEE
T ss_pred EEEEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEE
Confidence 555554322 223345677777777788899999988743333222221111 12223444 566565555788999
Q ss_pred EEecCCCcceEEecc--ccC-------CCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591 284 IWKREAFGKLCRVGA--ITG-------HEGPVKCLQASPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 284 iw~~~~~~~~~~~~~--~~~-------h~~~v~~~~~~~~~~~~~~~l~s~~~d 328 (353)
+.|..+++....+.. +.. -....+.|+|+|+ ++.|+..+..
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~----~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE----HHRLFVTGKL 245 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT----TTEEEEEETT
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC----CCEEEEECCC
Confidence 999999885433322 111 1235689999998 5555555543
No 250
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.02 E-value=5e-08 Score=79.49 Aligned_cols=257 Identities=12% Similarity=0.013 Sum_probs=153.0
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccCc-------eeeEEEE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHGD-------GSVKAVV 63 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~-------~~v~~~~ 63 (353)
..+++.+.++.....+ .++++ +++++.+. .++.|.+||..+++.+.++..+. ..-..+.
T Consensus 53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence 4678888888766666 68885 77777775 36899999999999999986431 1234566
Q ss_pred Ee--CCEEEEecC--CCcEEE--EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEe
Q 018591 64 TV--GNKVFTAHQ--DSRIRV--WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY 137 (353)
Q Consensus 64 ~~--~~~l~s~~~--dg~i~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 137 (353)
++ +++++.+.. +..+.+ +|..+ ...+ +. +. .+ .+...
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t-----v~~i---~v--------------------------~~--~~-~~~p~ 173 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD-----DQLT---KS--------------------------AS--CF-HIHPG 173 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE-----EEEE---EC--------------------------SS--CC-CCEEE
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh-----ceEE---EC--------------------------CC--ce-EEccC
Confidence 65 778887764 456888 88766 1111 10 00 00 01112
Q ss_pred C-CeEEEecCCCcEEEEEcCC-----ceeee----eccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccce
Q 018591 138 N-GLIYSGSWDKTLKVWRVAD-----LKCLE----SIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLK 206 (353)
Q Consensus 138 ~-~~l~~~~~dg~v~iwd~~~-----~~~~~----~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 206 (353)
. ..+++.+.||.+.+.|+.+ ++... .+.-...+. .. .++.++..+. +.+.+.|....... ..
T Consensus 174 g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~---v~ 246 (368)
T 1mda_H 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGAT---MK 246 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCE---EE
T ss_pred CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcce---EE
Confidence 2 4556677888888888876 44332 121122333 24 4456565566 89999998654311 11
Q ss_pred eeeec-------cCCce--eeEEEEcCCCCeEEeecC---------CCcEEEeeccccccceeeeeecccc-ceeEEEEE
Q 018591 207 GILEG-------HKDVS--LNSVVVSDDGKWVYGGGS---------DGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVC 267 (353)
Q Consensus 207 ~~~~~-------~~~~~--v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~ 267 (353)
..+.. ....+ ...++++|+++.++++.. ++.+.++|+.+.+ ....+... ...-..++
T Consensus 247 ~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~----vv~~i~vg~~p~gi~~s 322 (368)
T 1mda_H 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----TSGPISNGHDSDAIIAA 322 (368)
T ss_dssp CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----EEECCEEEEEECEEEEC
T ss_pred EEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe----EEEEEECCCCcceEEEC
Confidence 11110 00000 123789999998886533 2356799999874 33333222 23345566
Q ss_pred EcCc-EEEEec-CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591 268 LVGE-FLCSGS-ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 268 ~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 313 (353)
++++ ++++.. .++.|.++|+.+++ .+..+.... ....+++.+
T Consensus 323 ~Dg~~l~va~~~~~~~VsVID~~t~k---vv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 323 QDGASDNYANSAGTEVLDIYDAASDQ---DQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp CSSSCEEEEEETTTTEEEEEESSSCE---EEEECCCCS-CCCEEECCC
T ss_pred CCCCEEEEEccCCCCeEEEEECCCCc---EEEEEECCC-CCCEEEeec
Confidence 6776 556666 59999999999987 444444332 344555543
No 251
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.00 E-value=6.4e-07 Score=78.06 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=46.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCceeeEEeccCcee---------eEEEEEeCCEEEEecCCCcEEEEEcccCcc
Q 018591 25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS---------VKAVVTVGNKVFTAHQDSRIRVWKVSRSSE 88 (353)
Q Consensus 25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 88 (353)
.+..++.++.++.|.-+|..+|+.+..+...... -..+...+..++.++.|+.|..+|.++++.
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~ 139 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKV 139 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCE
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCE
Confidence 3555666666445999999999999887654221 123445688899999999999999998873
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.99 E-value=4.2e-06 Score=65.47 Aligned_cols=242 Identities=10% Similarity=0.038 Sum_probs=137.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCcee-----eEEeccCceeeEEEEEe--CCEEE-EecCCCcEEEEEcccCccceeEEeecc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRM-----FTKFGHGDGSVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSENVFRLVDTL 97 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~~~~~~~~~~ 97 (353)
|.+|+.+.. +.|+.+++..... ...+.........++++ ++.|+ +-..++.|..++++..... ...
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~--- 74 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TII--- 74 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEE---
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEE---
Confidence 345555554 4788888765432 11222223456788887 45555 4455678999998654311 000
Q ss_pred ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEE
Q 018591 98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGL 174 (353)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i 174 (353)
.........+++++ +.++ +-...+.|.+++++.................+
T Consensus 75 ---------------------------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i 127 (267)
T 1npe_A 75 ---------------------------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI 127 (267)
T ss_dssp ---------------------------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred ---------------------------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEE
Confidence 01113456788876 4444 44556789999986432222222222456888
Q ss_pred EEe--CCeEEEEcC---CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE-EeecCCCcEEEeecccccc
Q 018591 175 VAS--KGIVYSASA---DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIV 248 (353)
Q Consensus 175 ~~~--~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~ 248 (353)
++. ++.++.+.. .+.|..+++.... ...........+ ..++++|++..| ++-...+.|..+|......
T Consensus 128 ~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-----~~~~~~~~~~~P-~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 128 VTDPVRGNLYWTDWNRDNPKIETSHMDGTN-----RRILAQDNLGLP-NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp EEETTTTEEEEEECCSSSCEEEEEETTSCC-----CEEEECTTCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred EEeeCCCEEEEEECCCCCcEEEEEecCCCC-----cEEEEECCCCCC-cEEEEcCCCCEEEEEECCCCEEEEEecCCCce
Confidence 884 355555543 3688888876433 111111223345 899999987655 4555668899999876421
Q ss_pred ceeeeeeccccceeEEEEEEcCcE-EEEecCCCeEEEEecCCCcceEEeccccCC-CcCeEEEEeecC
Q 018591 249 RWKLACETKAHEMAVLCVCLVGEF-LCSGSADKSIGIWKREAFGKLCRVGAITGH-EGPVKCLQASPN 314 (353)
Q Consensus 249 ~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~ 314 (353)
. ... .. ......+++++.. +++...++.|..+|..+++. +..+... ......+++.|+
T Consensus 202 ~-~~~---~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~---~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 202 R-KVL---EG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKE---MDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp E-EEE---EC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEE---EEEECCSSCCCCCCEEEECS
T ss_pred E-EEe---cC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCc---eEEEccccccccceeeecCc
Confidence 1 111 11 1122345555554 44555678999999988774 3333322 224677888887
No 253
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=3.7e-08 Score=80.32 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=118.0
Q ss_pred ecCCceEEEEEeC-CeEEEecC------CCcEEEEEcCCceeeeecccc------CcceEEEEEe--CCeE-EEEc---C
Q 018591 126 EHADSISCLTVYN-GLIYSGSW------DKTLKVWRVADLKCLESIKAH------DDAVNGLVAS--KGIV-YSAS---A 186 (353)
Q Consensus 126 ~~~~~i~~~~~~~-~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~------~~~v~~i~~~--~~~l-~~~~---~ 186 (353)
++...+..+++++ +.|..... ++.|.+||+.+++.+..+... ...+..+++. ++.+ ++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 4567889999998 65655543 578999999988876665422 2356888885 3444 4444 5
Q ss_pred CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE
Q 018591 187 DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV 266 (353)
Q Consensus 187 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 266 (353)
++.|.+||+.+++ ..+.+..|.........+.+++..+.+.+.++.+..|... ..-.++
T Consensus 144 ~~~i~v~d~~~g~-----~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~----------------~~gia~ 202 (343)
T 2qe8_A 144 KAALIRVDLQTGL-----AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG----------------VNGIVL 202 (343)
T ss_dssp GCEEEEEETTTCC-----EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCC----------------EEEEEE
T ss_pred CCeEEEEECCCCC-----EEEEecCCCcccccccceeECCEEEEeccCCCceeceecc----------------cceeEe
Confidence 7899999998776 4444444322110113445567677777777777655311 112456
Q ss_pred EEcCcEEEEecCCC-eEEEEecCC---Cc--ceEEec--cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 267 CLVGEFLCSGSADK-SIGIWKREA---FG--KLCRVG--AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 267 ~~~~~~l~~~~~dg-~i~iw~~~~---~~--~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
+++++.|+.+..++ .+..++... +. ...... ...++.+....++++++ |.++++...++.|.+|+.++
T Consensus 203 s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~----G~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 203 DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD----HNIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT----CCEEEEEGGGTEEEEEETTT
T ss_pred ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC----CCEEEEccCCCeEEEEECCC
Confidence 66788777776655 555554321 00 000000 11133445678999999 99999999999999999844
Q ss_pred CC
Q 018591 339 QS 340 (353)
Q Consensus 339 ~~ 340 (353)
++
T Consensus 279 G~ 280 (343)
T 2qe8_A 279 RA 280 (343)
T ss_dssp TE
T ss_pred CC
Confidence 43
No 254
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=7.9e-07 Score=73.17 Aligned_cols=170 Identities=10% Similarity=-0.009 Sum_probs=105.9
Q ss_pred CcEEEEEcCCceeeeeccccCc---ceEEEEEeC--CeEEEEc-------------------CCCcEEEEeCCCCCcccc
Q 018591 148 KTLKVWRVADLKCLESIKAHDD---AVNGLVASK--GIVYSAS-------------------ADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~---~v~~i~~~~--~~l~~~~-------------------~dg~i~iwd~~~~~~~~~ 203 (353)
|.|.++|..+++.+.++..... .-+.+.|++ +.+++.. .+.+|.+||+.+++
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k---- 239 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK---- 239 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE----
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc----
Confidence 7899999999999988863322 233466643 3666663 37899999999865
Q ss_pred cceeeeecc-CCceeeEEEE--cCCCCeEEeec------CCCcEEEeeccccccceeeee---------ec---c-----
Q 018591 204 SLKGILEGH-KDVSLNSVVV--SDDGKWVYGGG------SDGFVMGWEGNVEIVRWKLAC---------ET---K----- 257 (353)
Q Consensus 204 ~~~~~~~~~-~~~~v~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~---------~~---~----- 257 (353)
....+... .+.....+.| +|+++++++++ .+++|.+|....+........ .+ .
T Consensus 240 -~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~ 318 (462)
T 2ece_A 240 -RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA 318 (462)
T ss_dssp -EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred -EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence 44444442 2222255656 99999988877 456887766554321111100 00 0
Q ss_pred -ccceeEEEEEEcCcEEEEec-CCCeEEEEecCCCcceEEeccccCC--------------CcCeEEEEeecCCCCCCeE
Q 018591 258 -AHEMAVLCVCLVGEFLCSGS-ADKSIGIWKREAFGKLCRVGAITGH--------------EGPVKCLQASPNAVGGGFL 321 (353)
Q Consensus 258 -~~~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h--------------~~~v~~~~~~~~~~~~~~~ 321 (353)
+....-..++++|++|.++. ..+.|.+||+.....+..+..+.-. .+.-..++++|| |++
T Consensus 319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD----Gk~ 394 (462)
T 2ece_A 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD----GRR 394 (462)
T ss_dssp ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT----SSE
T ss_pred CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC----CCE
Confidence 11223355777888887765 4789999999754444444433221 013688999999 988
Q ss_pred EEEcc
Q 018591 322 LYSGS 326 (353)
Q Consensus 322 l~s~~ 326 (353)
|+++.
T Consensus 395 LyVaN 399 (462)
T 2ece_A 395 VYVTN 399 (462)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88887
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.93 E-value=2.5e-06 Score=64.43 Aligned_cols=186 Identities=8% Similarity=-0.001 Sum_probs=116.3
Q ss_pred CceEEEEEeCCeE-EEecCC--CcEEEEEcCCceeeeeccccCcc-eEEEEEeCC-eEEEEcCCCcEEEEeCCCCCcccc
Q 018591 129 DSISCLTVYNGLI-YSGSWD--KTLKVWRVADLKCLESIKAHDDA-VNGLVASKG-IVYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 129 ~~i~~~~~~~~~l-~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
.-...+.|+++.| .+.+.+ ..|+.+|+.+++.+..+...... --.++..++ .....-.++.+.+||..+.+
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~---- 96 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT---- 96 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE----
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc----
Confidence 3466889988544 444554 48999999999998887543322 134556555 44455568999999999887
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEE-cCcEEEEecCCCe
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCL-VGEFLCSGSADKS 281 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~ 281 (353)
....+..... . ..++ ++++.|+.+..++.|.++|..+.+..........+.. ..+..+.+ +|+..+..-.+..
T Consensus 97 -~~~ti~~~~~-G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~ 171 (243)
T 3mbr_X 97 -PRARFRYPGE-G-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSR 171 (243)
T ss_dssp -EEEEEECSSC-C-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTE
T ss_pred -EEEEEeCCCC-c-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCe
Confidence 5555554332 2 3444 5677777777789999999988743333222211111 23344555 4665555556889
Q ss_pred EEEEecCCCcceEEecc--cc--------CCCcCeEEEEeecCCCCCCeEEEEccC
Q 018591 282 IGIWKREAFGKLCRVGA--IT--------GHEGPVKCLQASPNAVGGGFLLYSGSL 327 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~--~~--------~h~~~v~~~~~~~~~~~~~~~l~s~~~ 327 (353)
|.+.|..+++....+.. +. .-....+.|+++|+ ++.|+..+.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~----~~~lfVTGK 223 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE----HDRLFVTGK 223 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT----TTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC----CCEEEEECC
Confidence 99999999874433321 11 11235789999998 444444443
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.92 E-value=1e-06 Score=67.10 Aligned_cols=182 Identities=9% Similarity=0.020 Sum_probs=117.0
Q ss_pred eEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcc-eEEEEEeCC-eEEEEcCCCcEEEEeCCCCCccccccee
Q 018591 131 ISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA-VNGLVASKG-IVYSASADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 131 i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
...+.|+. .++.+.+.+|.|+.+|+.+++.+..+ -.... -..++..++ ..++.-.++.+.+||..+.+ ...
T Consensus 57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~-----~~~ 130 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ-----RER 130 (268)
T ss_dssp EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE-----EEE
T ss_pred cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc-----EEE
Confidence 46788888 66677788889999999999988777 32221 234666555 44555568999999999987 555
Q ss_pred eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEE-cCcEEEEecCCCeEEEE
Q 018591 208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCL-VGEFLCSGSADKSIGIW 285 (353)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~i~iw 285 (353)
.+..... . ..++ ++++.|+.+..++.|.++|..+.+..........+.. ..+..+.+ +|...+....++.|.+.
T Consensus 131 ti~~~~e-G-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 131 TTRYSGE-G-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEECSSC-C-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEE
T ss_pred EEeCCCc-e-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEE
Confidence 5554322 2 3344 5678888887899999999988743333222221111 12344455 56655555578899999
Q ss_pred ecCCCcceEEecc--cc--------CCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 286 KREAFGKLCRVGA--IT--------GHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 286 ~~~~~~~~~~~~~--~~--------~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
|.++++....+.. +. .-....+.|+++|+ .+.+++||
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~---~~rlfVTG 253 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG---SGRIFMTG 253 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT---TCCEEEEE
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC---CCEEEEeC
Confidence 9999874433321 11 11235789999998 13455554
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.89 E-value=6.5e-06 Score=73.27 Aligned_cols=263 Identities=13% Similarity=0.053 Sum_probs=136.5
Q ss_pred CCcEEEEEeCCC-----------cEEEEeCCCceee--EEecc-CceeeEEEEE--eCCEEEEecC-CCcEEEEEcccCc
Q 018591 25 CGEFILSASQGK-----------DIIVWQQPDLRMF--TKFGH-GDGSVKAVVT--VGNKVFTAHQ-DSRIRVWKVSRSS 87 (353)
Q Consensus 25 ~~~~l~s~~~dg-----------~v~vwd~~~~~~~--~~~~~-~~~~v~~~~~--~~~~l~s~~~-dg~i~~w~~~~~~ 87 (353)
++++++.|+.+. .+.+||..+++-. ..... +.....++++ ++..++.|+. ++.+.+||..+..
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 578888887643 5889998876532 22322 2222333444 3777788874 4589999988764
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE-eCCeEEEec-CC-----CcEEEEEcCCcee
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV-YNGLIYSGS-WD-----KTLKVWRVADLKC 160 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~-~d-----g~v~iwd~~~~~~ 160 (353)
+..+..++. ....-.+... ....++.|+ .+ ..+.+||..+.+-
T Consensus 277 ---W~~~~~~~~---------------------------~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 277 ---WIPGPDMQV---------------------------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp ---EEECCCCSS---------------------------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ---eeECCCCCc---------------------------cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 222222221 1111122233 236777777 34 5799999987653
Q ss_pred eee-----ccccCcceEEEE-EeCCeEEEEcC---------CCcEEEEeCCCCCcccccceeeeec------cCCceeeE
Q 018591 161 LES-----IKAHDDAVNGLV-ASKGIVYSASA---------DGKIKAWGKELGKSHCHSLKGILEG------HKDVSLNS 219 (353)
Q Consensus 161 ~~~-----~~~~~~~v~~i~-~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~ 219 (353)
... .......-.++. ..+..++.++. ...+..||..+.... ........ ..... .+
T Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~--~~~~~~~~~~~~~~~~~~~-~a 403 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV--KSAGKRQSNRGVAPDAMCG-NA 403 (656)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--EEEEECEETTEECCCCBTC-EE
T ss_pred eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee--ecCCccccccccCCCCCCC-ce
Confidence 322 000000000011 02223333333 345778888766511 11111110 01111 34
Q ss_pred EEEcC-CCCeEEeecCCC-----------cEEEeeccccccceeeee--eccccceeEE-EEEEcCcEEEEecCC-----
Q 018591 220 VVVSD-DGKWVYGGGSDG-----------FVMGWEGNVEIVRWKLAC--ETKAHEMAVL-CVCLVGEFLCSGSAD----- 279 (353)
Q Consensus 220 ~~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~--~~~~~~~~v~-~~~~~~~~l~~~~~d----- 279 (353)
+.+.. ++++++.|+.++ .+.+||..+.. +.... .+........ .+.+++++++.|+.+
T Consensus 404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP--NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC--EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC--eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 44543 677888887532 57788877653 22221 2222222223 334489999998854
Q ss_pred ------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC
Q 018591 280 ------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL 327 (353)
Q Consensus 280 ------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~ 327 (353)
..+.+||..+. ....+..+........+..+.|+ +++++.|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~-~W~~~~~~~~~R~~hs~a~ll~d----g~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQD-TFYKQNPNSIVRVYHSISLLLPD----GRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGT-EEEECCCCSSCCCTTEEEEECTT----SCEEEEECC
T ss_pred CCCCcccceEEEcCCCC-ceeecCCCCCccccccHhhcCCC----cEEEecCCC
Confidence 46899998764 33333333322233344556788 999999985
No 258
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.88 E-value=6.4e-06 Score=64.44 Aligned_cols=200 Identities=8% Similarity=-0.011 Sum_probs=117.3
Q ss_pred ceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCe-EEEEcCCCcEEEEeCCCCCcccc
Q 018591 130 SISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGI-VYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 130 ~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~-l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
....+++++ +.|+ +-..++.|..++.........+.........+++. .+. +++-...+.|.++++....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---- 112 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---- 112 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC----
Confidence 467888887 4444 44557899999987654433332223467888884 344 4455567889999987543
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecC---CCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEEEecCC
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGS---DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLCSGSAD 279 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d 279 (353)
...........+ ..++++|++..|+.+.. .+.|..+++..... ............-.++.+++. ++++-...
T Consensus 113 -~~~~~~~~~~~P-~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~~~~~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 113 -RRVLFDTGLVNP-RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp -CEEEECSSCSSE-EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred -EEEEEECCCCCc-cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--EEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 112222222345 89999997665555443 36788888764321 111111111223344555554 44556667
Q ss_pred CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
+.|..+|....... .+ ..+ ......++.. . +.++++...++.|.+++..+++.+....
T Consensus 189 ~~I~~~~~~g~~~~-~~--~~~-~~~P~gi~~d-~----~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 189 HRAECLNPAQPGRR-KV--LEG-LQYPFAVTSY-G----KNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TEEEEEETTEEEEE-EE--EEC-CCSEEEEEEE-T----TEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEecCCCceE-EE--ecC-CCCceEEEEe-C----CEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 89999998754321 11 122 2234566654 3 5666666667899999998887665543
No 259
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.83 E-value=2.2e-06 Score=73.07 Aligned_cols=142 Identities=13% Similarity=-0.042 Sum_probs=82.4
Q ss_pred cEEEEeCCC--CCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeecccccc--------ceeeeeecc
Q 018591 189 KIKAWGKEL--GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIV--------RWKLACETK 257 (353)
Q Consensus 189 ~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--------~~~~~~~~~ 257 (353)
.|.+.|.++ ++ .....+.... .+ .++.++|||+++++++ .+..|.++|+.+.+. .........
T Consensus 255 ~V~VID~~~~~~~----~~~~~Ipvg~-~P-hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 255 GVKVVDGRKEASS----LFTRYIPIAN-NP-HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp TEEEEECSGGGCC----SSEEEEEEES-SC-CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred cEEEEeCcccCCc----eeEEEEecCC-Cc-eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 467777765 22 1122332222 23 7899999999876654 678999999986521 011122222
Q ss_pred -ccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc-------ceEEeccccCCCcC-----eEEEEeecCCCCCCeEEEE
Q 018591 258 -AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG-------KLCRVGAITGHEGP-----VKCLQASPNAVGGGFLLYS 324 (353)
Q Consensus 258 -~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~~~l~s 324 (353)
+....-+.++++|...++...|+.|.+||+.... ....+..+..|-.+ -..+.++|| |++|++
T Consensus 329 vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D----Gk~l~~ 404 (595)
T 1fwx_A 329 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT----NDWLVC 404 (595)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC----SSEEEE
T ss_pred CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC----CCEEEE
Confidence 2223335566678555677789999999987621 12244444444332 123356788 999988
Q ss_pred ccC---CCe----------EEEEEcCCCC
Q 018591 325 GSL---DKS----------LRVWWVSKQS 340 (353)
Q Consensus 325 ~~~---dg~----------i~iw~~~~~~ 340 (353)
+.. |.. -.++|++.++
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 743 442 1778885443
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.82 E-value=9.6e-06 Score=65.37 Aligned_cols=253 Identities=12% Similarity=0.026 Sum_probs=133.3
Q ss_pred eEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE
Q 018591 59 VKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV 136 (353)
Q Consensus 59 v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 136 (353)
..+++++ ++.++++..++.|..|+.+++....+........... .... ..............+++
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~g~-------~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAF------CENS-------TDAEKRPLCGRTYDISY 87 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHH------HTTC-------CCGGGHHHHCCEEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccc------cccc-------cchhccccCCCCceEEE
Confidence 3456666 5568888888899999876544211111000000000 0000 00000011234678888
Q ss_pred eC--CeEEEecCCCcEEEEEcCCceeeeec---cc-cCcceEEEEE-e-CCeEEEEcC------------------CCcE
Q 018591 137 YN--GLIYSGSWDKTLKVWRVADLKCLESI---KA-HDDAVNGLVA-S-KGIVYSASA------------------DGKI 190 (353)
Q Consensus 137 ~~--~~l~~~~~dg~v~iwd~~~~~~~~~~---~~-~~~~v~~i~~-~-~~~l~~~~~------------------dg~i 190 (353)
.+ +.|+++...+.|..+|..+++..... .+ .......+++ + ++.++.+.. ++.|
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 85 67777766666888887655322111 11 1234677888 4 455554432 3678
Q ss_pred EEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeecccccc-ceeeeeeccccceeEEEEEE
Q 018591 191 KAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIV-RWKLACETKAHEMAVLCVCL 268 (353)
Q Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~ 268 (353)
..||..+++ ..... .....+ ..++++|+++.|+.+ ...+.|..|++..... .........+ ..-.++..
T Consensus 168 ~~~d~~~~~-----~~~~~-~~~~~p-~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~ 238 (322)
T 2fp8_A 168 IKYDPSTKE-----TTLLL-KELHVP-GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNA 238 (322)
T ss_dssp EEEETTTTE-----EEEEE-EEESCC-CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECT
T ss_pred EEEeCCCCE-----EEEec-cCCccC-cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC--CCCeEECC
Confidence 888876654 21111 112233 789999999866555 5668899999875321 1111112222 12234444
Q ss_pred cCcEEEEecC----------CCeEEEEecCCCcceEEeccccCC-CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 269 VGEFLCSGSA----------DKSIGIWKREAFGKLCRVGAITGH-EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 269 ~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
+|++.++... .+.|..+|.. ++....+....+. -..++.+++ .+ ++++++...++.|..+++.
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~----g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HD----GLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ET----TEEEEECSSCSEEEEEEC-
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eC----CEEEEeecCCCceEEEecc
Confidence 5776665544 4678888864 4433222221111 234667766 34 7777887788899999876
Q ss_pred CC
Q 018591 338 KQ 339 (353)
Q Consensus 338 ~~ 339 (353)
..
T Consensus 313 ~~ 314 (322)
T 2fp8_A 313 KK 314 (322)
T ss_dssp --
T ss_pred cc
Confidence 43
No 261
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.82 E-value=1.2e-06 Score=72.20 Aligned_cols=187 Identities=14% Similarity=0.012 Sum_probs=117.1
Q ss_pred CeEEEecCCCcEEEEEcCCc----eeeeecc------cc-CcceEEEEE-eCCeEEEEcCC------CcEEEEeCCCCCc
Q 018591 139 GLIYSGSWDKTLKVWRVADL----KCLESIK------AH-DDAVNGLVA-SKGIVYSASAD------GKIKAWGKELGKS 200 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~----~~~~~~~------~~-~~~v~~i~~-~~~~l~~~~~d------g~i~iwd~~~~~~ 200 (353)
.+++.+-.++.|.++|+.+. +..+.++ .. ......+.. +++.++++..+ |.|.++|.++.+
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~- 175 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE- 175 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC-
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe-
Confidence 45666778899999998754 5555553 11 113344555 55566666555 789999999887
Q ss_pred ccccceeeeeccCC--ceeeEEEEcCCCCeEEeec-------------------CCCcEEEeeccccccceeeeeecccc
Q 018591 201 HCHSLKGILEGHKD--VSLNSVVVSDDGKWVYGGG-------------------SDGFVMGWEGNVEIVRWKLACETKAH 259 (353)
Q Consensus 201 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~~ 259 (353)
+...+..... ..-..+.|+|+++.+++.. .+.+|.+||+.+++ ....+...
T Consensus 176 ----v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k----~~~tI~vg 247 (462)
T 2ece_A 176 ----PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK----RIHSLTLG 247 (462)
T ss_dssp ----EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE----EEEEEESC
T ss_pred ----EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc----EeeEEecC
Confidence 5655553221 1124588899999888884 36899999998763 22222221
Q ss_pred --ceeEEE--E--EEcCcEEEEec------CCCeEEEEecCCCcceEEeccc--cC----------------CCcCeEEE
Q 018591 260 --EMAVLC--V--CLVGEFLCSGS------ADKSIGIWKREAFGKLCRVGAI--TG----------------HEGPVKCL 309 (353)
Q Consensus 260 --~~~v~~--~--~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~--~~----------------h~~~v~~~ 309 (353)
...... + ++++++++++. .+++|.+|..+.+ .......+ .. -......|
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 122222 3 45577776665 5678887776543 22111111 00 02457889
Q ss_pred EeecCCCCCCeEEEEccC-CCeEEEEEcCCC
Q 018591 310 QASPNAVGGGFLLYSGSL-DKSLRVWWVSKQ 339 (353)
Q Consensus 310 ~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~ 339 (353)
.++|| +++|.++.. .+.|.+||+...
T Consensus 327 ~lS~D----GrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 327 DISLD----DKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EECTT----SCEEEEEETTTTEEEEEECSST
T ss_pred EECCC----CCEEEEEeCCCCEEEEEEecCC
Confidence 99999 887777654 689999999744
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.53 E-value=0.00026 Score=58.53 Aligned_cols=233 Identities=14% Similarity=0.044 Sum_probs=129.5
Q ss_pred eEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE-EecCCCcEEEEEcccCccceeEEe
Q 018591 19 VSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 19 v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~~~~~~~ 94 (353)
-+|.+.+ ..+|+.+. ...|+..++........... ......++|+ ++.|+ +-...+.|..++++...... .+
T Consensus 79 ~~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~ 154 (386)
T 3v65_B 79 RSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VV 154 (386)
T ss_dssp SCEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE--EE
T ss_pred CeECCccccceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE--EE
Confidence 3455544 33444443 35788899876665544443 3457788887 44554 44566788888887653111 10
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAHDDAV 171 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v 171 (353)
. ........+++.+ + ++++-...+.|.+.++........+...-...
T Consensus 155 ~------------------------------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P 204 (386)
T 3v65_B 155 S------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP 204 (386)
T ss_dssp C------------------------------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCE
T ss_pred e------------------------------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCC
Confidence 0 0111223456654 3 44455556788888876433333333333556
Q ss_pred EEEEEe--CCeEE-EEcCC-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCCCcEEEeecccc
Q 018591 172 NGLVAS--KGIVY-SASAD-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSDGFVMGWEGNVE 246 (353)
Q Consensus 172 ~~i~~~--~~~l~-~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~ 246 (353)
..+++. .+.|+ +-... +.|..+++.... ...........+ ..++++|++..|+ +-...+.|..+++...
T Consensus 205 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-----~~~~~~~~~~~P-nGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 205 RAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-----RRIIADTHLFWP-NGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----CEEEECSSCSCE-EEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-----cEEEEECCCCCe-eeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 888884 34444 44444 678888876543 222222233345 8999998665555 4455678999998754
Q ss_pred ccceeeeeeccccceeEEEEE-EcCcEEEEecCCCeEEEEecCCCcceEE
Q 018591 247 IVRWKLACETKAHEMAVLCVC-LVGEFLCSGSADKSIGIWKREAFGKLCR 295 (353)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 295 (353)
.. .........+ ...++ ..+.++++-...+.|..++..+++....
T Consensus 279 ~~-~~~~~~~~~~---P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~ 324 (386)
T 3v65_B 279 HR-KAVISQGLPH---PFAITVFEDSLYWTDWHTKSINSANKFTGKNQEI 324 (386)
T ss_dssp SC-EEEECSSCSS---EEEEEEETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred ee-EEEEECCCCC---ceEEEEECCEEEEeeCCCCeEEEEECCCCcceEE
Confidence 21 1121111112 23333 3466667777788999998666664333
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.52 E-value=0.00021 Score=57.46 Aligned_cols=241 Identities=12% Similarity=0.064 Sum_probs=129.6
Q ss_pred eeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc--------------------CceeeEEEEEe--CC
Q 018591 12 LSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH--------------------GDGSVKAVVTV--GN 67 (353)
Q Consensus 12 l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~~--~~ 67 (353)
+.+.-....+++++ +++++++..++.|..||..+++.. .+.. .......++++ +.
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 44433456778886 676888888999999998765443 2210 01246778887 46
Q ss_pred EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec
Q 018591 68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS 145 (353)
Q Consensus 68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~ 145 (353)
.|+.+...+.|..+|.+++.. ..+...... ........+++.+ ..+..+.
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~---~~~~~~~~~-------------------------~~~~~p~~i~~d~~~G~l~v~d 144 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHA---TQLATSVDG-------------------------VPFKWLYAVTVDQRTGIVYFTD 144 (322)
T ss_dssp EEEEEETTTEEEEECTTCEEC---EEEESEETT-------------------------EECSCEEEEEECTTTCCEEEEE
T ss_pred cEEEEECCCCEEEEeCCCCEE---EEecccCCC-------------------------CcccccceEEEecCCCEEEEEC
Confidence 677775555577777654321 111100000 0112244556654 2333332
Q ss_pred ------------------CCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEE-EEcCCCcEEEEeCCCCCccccc
Q 018591 146 ------------------WDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVY-SASADGKIKAWGKELGKSHCHS 204 (353)
Q Consensus 146 ------------------~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~ 204 (353)
.++.|..+|..+++....... ......+++++ +.++ +-...+.|..|++.......
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-- 221 (322)
T 2fp8_A 145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-- 221 (322)
T ss_dssp SCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC--
T ss_pred CcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc--
Confidence 236788888766654332221 23346788843 3454 44667899999987532111
Q ss_pred ceeeeeccCCceeeEEEEcCCCCeEEeecC----------CCcEEEeeccccccceeeeeecccc-ceeEEEEEE-cCcE
Q 018591 205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGS----------DGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVCL-VGEF 272 (353)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~ 272 (353)
...+..... + ..+++.++|++.++... .+.|..+|.... ..... ....+. ...+..+.. ++++
T Consensus 222 -~~~~~~~~g-P-~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~-~~~~~-~~~~g~~~~~~~~~~~~~g~L 296 (322)
T 2fp8_A 222 -AEVLVKIPN-P-GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN-ILEVI-PLPPPFAGEHFEQIQEHDGLL 296 (322)
T ss_dssp -EEEEEECSS-E-EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC-EEEEE-ECCTTTTTSCCCEEEEETTEE
T ss_pred -cceEEeCCC-C-CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCC-EEEEE-ECCCCCccccceEEEEeCCEE
Confidence 111111122 4 88999999986666544 466888886532 11111 111110 122333333 4666
Q ss_pred EEEecCCCeEEEEecCC
Q 018591 273 LCSGSADKSIGIWKREA 289 (353)
Q Consensus 273 l~~~~~dg~i~iw~~~~ 289 (353)
+++...++.|..+++..
T Consensus 297 ~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 297 YIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEECSSCSEEEEEEC--
T ss_pred EEeecCCCceEEEeccc
Confidence 66666788899998764
No 264
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.51 E-value=3.7e-05 Score=65.72 Aligned_cols=187 Identities=12% Similarity=0.108 Sum_probs=117.4
Q ss_pred CeEE-EecCCCcEEEEEcCCceeeeecccc-CcceEEEEE-e-C--CeEEEEc------------------CCCcEEEEe
Q 018591 139 GLIY-SGSWDKTLKVWRVADLKCLESIKAH-DDAVNGLVA-S-K--GIVYSAS------------------ADGKIKAWG 194 (353)
Q Consensus 139 ~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~-~-~--~~l~~~~------------------~dg~i~iwd 194 (353)
++++ ....++.|.+.|+.+.++...+.-. ......+++ . + +++++++ .++.+.+.|
T Consensus 102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID 181 (595)
T 1fwx_A 102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD 181 (595)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEE
Confidence 4444 4455677999999999988844322 345677776 3 3 3666663 346789999
Q ss_pred CCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC--------------------------------------
Q 018591 195 KELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-------------------------------------- 236 (353)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------------------------------------- 236 (353)
..+.+ ....+.-.. .+ ..++++|+|+++++.+.+.
T Consensus 182 ~~t~~-----v~~qI~Vgg-~p-d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 182 ADKWE-----VAWQVLVSG-NL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp TTTTE-----EEEEEEESS-CC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred CCCCe-----EEEEEEeCC-Cc-cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 98776 444443322 23 6788999999998887553
Q ss_pred cEEEeeccccccceeeeeec-cccceeEEEEEEcCcEEEEe-cCCCeEEEEecCCCcce---------EEeccccCCCcC
Q 018591 237 FVMGWEGNVEIVRWKLACET-KAHEMAVLCVCLVGEFLCSG-SADKSIGIWKREAFGKL---------CRVGAITGHEGP 305 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~---------~~~~~~~~h~~~ 305 (353)
.|.+.|..+.... ...... .+....-..++|||++++++ ..+.+|.++|+.+.+.. ....... -...
T Consensus 255 ~V~VID~~~~~~~-~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~g 332 (595)
T 1fwx_A 255 GVKVVDGRKEASS-LFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLG 332 (595)
T ss_dssp TEEEEECSGGGCC-SSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSC
T ss_pred cEEEEeCcccCCc-eeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCC
Confidence 2444455441000 001111 11223336677888866655 47899999999864210 0122222 1245
Q ss_pred eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 306 v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
...++|+|+ |...++.-.|+.|.+|++++
T Consensus 333 P~h~aF~~d----G~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 333 PLHTAFDGR----GNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEEECTT----SEEEEEETTTTEEEEEEHHH
T ss_pred cceEEECCC----CeEEEEEecCCcEEEEEhhH
Confidence 789999999 86677788899999999876
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.48 E-value=0.00035 Score=57.70 Aligned_cols=199 Identities=11% Similarity=0.024 Sum_probs=116.4
Q ss_pred CceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCCCccc
Q 018591 129 DSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELGKSHC 202 (353)
Q Consensus 129 ~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~ 202 (353)
.....++|++ +.|+ +-...+.|..+++........+.........+++. .+ ++++-...+.|.+.++....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--- 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---
Confidence 4567889986 4444 44567889999987654333332222334566663 34 55666667889988887543
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeec-CC-CcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCC
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SD-GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSAD 279 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d 279 (353)
...........+ ..++++|.+..|+... .. +.|..+++...... .+. ........-.+++++ +.+.++-...
T Consensus 193 --~~~l~~~~l~~P-~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~-~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 193 --RKVLLWQSLEKP-RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIA-DTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp --CEEEECSSCSCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEE-CSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred --eEEeecCCCCCC-cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEE-ECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 222233333445 8999998766555443 34 67888887654211 111 111112233455544 4555566677
Q ss_pred CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
+.|..+++...... .+ +.........|++. . +.++++-...+.|..++..+++...
T Consensus 268 ~~I~~~d~dG~~~~-~~--~~~~~~~P~giav~-~----~~ly~td~~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 268 HVIERANLDGSHRK-AV--ISQGLPHPFAITVF-E----DSLYWTDWHTKSINSANKFTGKNQE 323 (386)
T ss_dssp TEEEEECTTSCSCE-EE--ECSSCSSEEEEEEE-T----TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CEEEEEeCCCCeeE-EE--EECCCCCceEEEEE-C----CEEEEeeCCCCeEEEEECCCCcceE
Confidence 89999998754322 22 22223456778883 3 5677777778889888866665443
No 266
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.47 E-value=0.00031 Score=56.63 Aligned_cols=272 Identities=8% Similarity=0.013 Sum_probs=136.3
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEec----cCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccc
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFG----HGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSEN 89 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~ 89 (353)
...+.+|.|. +..++ ++.+|.|. .....++.-.... .....+.++.++++.++.++.+|.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~-- 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQ-- 109 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTS--
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCC--
Confidence 4579999994 44555 55677653 3334444333332 124468888888666666666664432 222222
Q ss_pred eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeee-ecccc
Q 018591 90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLE-SIKAH 167 (353)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~ 167 (353)
....+.... .+...+..+.+.+ +.++.++.+|.|..-+ +.++.-. .....
T Consensus 110 tW~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~-DgG~tW~~~~~~~ 161 (327)
T 2xbg_A 110 SWSQIPLDP---------------------------KLPGSPRLIKALGNGSAEMITNVGAIYRTK-DSGKNWQALVQEA 161 (327)
T ss_dssp SCEECCCCT---------------------------TCSSCEEEEEEEETTEEEEEETTCCEEEES-STTSSEEEEECSC
T ss_pred CceECcccc---------------------------CCCCCeEEEEEECCCCEEEEeCCccEEEEc-CCCCCCEEeecCC
Confidence 111111100 1122345555544 4455555566543321 2222111 11234
Q ss_pred CcceEEEEE-eCCeEEEEcCCCcEEEE-eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591 168 DDAVNGLVA-SKGIVYSASADGKIKAW-GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV 245 (353)
Q Consensus 168 ~~~v~~i~~-~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 245 (353)
...+..+.+ +++.++..+.+|.+..- |-. +. .-..........+..+++.+++..++. +.+|.+++.+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~-----tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT-----AWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDN 234 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS-----SCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC-----ceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCC
Confidence 557888888 45555555556655443 321 22 111111112223478889998876544 4577777664222
Q ss_pred cccceeeeeec-cccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591 246 EIVRWKLACET-KAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL 322 (353)
Q Consensus 246 ~~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l 322 (353)
+ ..+...... ......+.++.+. +.+++++ .+|.+ ++..+.++....+.....+...+.++.|.++ +. +
T Consensus 235 G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~----~~-~ 306 (327)
T 2xbg_A 235 S-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP----DQ-G 306 (327)
T ss_dssp E-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET----TE-E
T ss_pred C-CeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC----Cc-e
Confidence 2 122221111 0112235666554 4555554 46766 4555556655555433334456888999765 55 5
Q ss_pred EEccCCCeEEEEE
Q 018591 323 YSGSLDKSLRVWW 335 (353)
Q Consensus 323 ~s~~~dg~i~iw~ 335 (353)
+.++.+|.|.-++
T Consensus 307 ~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 307 FILGQKGILLRYV 319 (327)
T ss_dssp EEECSTTEEEEEC
T ss_pred EEEcCCceEEEEc
Confidence 5666788776654
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.46 E-value=0.00035 Score=56.80 Aligned_cols=234 Identities=15% Similarity=0.056 Sum_probs=130.6
Q ss_pred CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE-EecCCCcEEEEEcccCccceeE
Q 018591 17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSENVFR 92 (353)
Q Consensus 17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~~~~~ 92 (353)
+..+|.+.. ..+|+.+. ...|+..++........+.. .....+++|+ ++.|+ +-...+.|..++++......
T Consensus 34 d~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-- 109 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-- 109 (349)
T ss_dssp TSSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--
T ss_pred CCCcccccccCceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE--
Confidence 445666654 33444443 35688888876555444443 3457788887 45555 44566788888887654111
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAHDD 169 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 169 (353)
.+. ........+++.+ + ++++-...+.|.+.+++.......+...-.
T Consensus 110 ~~~------------------------------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~ 159 (349)
T 3v64_C 110 VVS------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE 159 (349)
T ss_dssp EEC------------------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCS
T ss_pred EEe------------------------------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCC
Confidence 100 1112234566664 3 445555667899999864433333333335
Q ss_pred ceEEEEEe--CCe-EEEEcCC-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeecc
Q 018591 170 AVNGLVAS--KGI-VYSASAD-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGN 244 (353)
Q Consensus 170 ~v~~i~~~--~~~-l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~ 244 (353)
....+++. .+. +++-... +.|..+++.... ...........+ ..++++|++..|+. -...+.|..+++.
T Consensus 160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-----~~~~~~~~~~~P-nGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-----RRIIADTHLFWP-NGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----CEESCCSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-----cEEEEECCCCCc-ceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 56888885 344 4444444 778888877543 222222223345 89999986665554 4556789999987
Q ss_pred ccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce
Q 018591 245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL 293 (353)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 293 (353)
..... ........+... .++ ..+.++++-...+.|..++..+++..
T Consensus 234 G~~~~-~~~~~~~~~P~g-iav-~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 234 GSHRK-AVISQGLPHPFA-ITV-FEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp SCSCE-EEECSSCSSEEE-EEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCceE-EEEeCCCCCceE-EEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence 54211 111111122222 222 34666667677888988886666543
No 268
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.43 E-value=0.00036 Score=55.48 Aligned_cols=232 Identities=13% Similarity=0.114 Sum_probs=119.0
Q ss_pred ECCcEEEEEe-CC-----CcEEEEeCCCceeeEE--eccCceeeEEEEEeCCEEEEecCC-----CcEEEEEcccCccce
Q 018591 24 LCGEFILSAS-QG-----KDIIVWQQPDLRMFTK--FGHGDGSVKAVVTVGNKVFTAHQD-----SRIRVWKVSRSSENV 90 (353)
Q Consensus 24 ~~~~~l~s~~-~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~~w~~~~~~~~~ 90 (353)
+++.+++.|+ .+ ..+.++|..+.+-... +........++...+..++.|+.+ ..+.+||+.+.....
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 4466777777 33 4788999877653321 121112222233346666667654 368888887665222
Q ss_pred eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCC-----CcEEEEEcCCcee--eee
Q 018591 91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWD-----KTLKVWRVADLKC--LES 163 (353)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~--~~~ 163 (353)
...+..++... ....++......++.|+.+ ..+.+||+.+.+- +..
T Consensus 93 W~~~~~~p~~r---------------------------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 145 (301)
T 2vpj_A 93 WYSVAPMNVRR---------------------------GLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD 145 (301)
T ss_dssp CEEECCCSSCC---------------------------BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred eEECCCCCCCc---------------------------cceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCC
Confidence 33333332210 1111222333556666543 3688899876543 222
Q ss_pred ccccCcceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---
Q 018591 164 IKAHDDAVNGLVASKGIVYSASAD-----GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD--- 235 (353)
Q Consensus 164 ~~~~~~~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 235 (353)
+......-.++...+..++.|+.+ ..+..||+.+.+-... ..+...... .+++. -+++.++.|+.+
T Consensus 146 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~--~~~~~-~~~~i~v~GG~~~~~ 219 (301)
T 2vpj_A 146 MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV---TPMATKRSG--AGVAL-LNDHIYVVGGFDGTA 219 (301)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE---CCCSSCCBS--CEEEE-ETTEEEEECCBCSSS
T ss_pred CCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeC---CCCCccccc--ceEEE-ECCEEEEEeCCCCCc
Confidence 222122222233344466666654 4588899887652111 111111111 12222 256677777654
Q ss_pred --CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEEEEecCCC
Q 018591 236 --GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIGIWKREAF 290 (353)
Q Consensus 236 --g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iw~~~~~ 290 (353)
..+.+||+.+.. +..............++..++++++.|+.+ ..+.+||+.+.
T Consensus 220 ~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 220 HLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp BCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ccceEEEEeCCCCc--EEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 468899988763 333333333333334455578888888765 46788888764
No 269
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.40 E-value=0.00041 Score=55.16 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=101.1
Q ss_pred eCCeEEEecCC-----CcEEEEEcCCce-----eeeeccccCcceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCCcc
Q 018591 137 YNGLIYSGSWD-----KTLKVWRVADLK-----CLESIKAHDDAVNGLVASKGIVYSASAD-----GKIKAWGKELGKSH 201 (353)
Q Consensus 137 ~~~~l~~~~~d-----g~v~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 201 (353)
....++.|+.+ ..+.+||..+.+ .+..+......-..+...+..++.|+.+ ..+.+||+.+.+-.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 33566667654 468999987654 2323322222222233344456666543 35888998776521
Q ss_pred cccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEe
Q 018591 202 CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG 276 (353)
Q Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 276 (353)
. ...+...... .+++. -+++.++.|+.+ ..+.+||+.+. .+..............++..++.+++.|
T Consensus 142 ~---~~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 142 M---LGDMQTAREG--AGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp E---EEECSSCCBS--CEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred E---CCCCCCCccc--ceEEE-ECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEECCEEEEEe
Confidence 1 1111111111 12222 256677777654 45888998776 3333333333333334455578888888
Q ss_pred cCC-----CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----CeEEEEEcCCCC
Q 018591 277 SAD-----KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----KSLRVWWVSKQS 340 (353)
Q Consensus 277 ~~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~ 340 (353)
+.+ ..+.+||+.+.+ ...+..+.........+.+ + +++++.|+.+ ..+.+||.++.+
T Consensus 214 G~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPRCYVGATVL--R----GRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--T----TEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCCcccceEEEEeCCCCc-EEECCCCCCcccceeEEEE--C----CEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 764 468999998753 3344333222222222222 4 7788888866 467888887653
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.39 E-value=0.00052 Score=55.83 Aligned_cols=199 Identities=11% Similarity=0.024 Sum_probs=115.6
Q ss_pred CceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCCCccc
Q 018591 129 DSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELGKSHC 202 (353)
Q Consensus 129 ~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~ 202 (353)
.....++|++ +.|+ +-...+.|..+++........+.........+++. .+ .+++-...+.|.+.++....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 3467889886 5554 44567889999987654333332222344667773 34 55666667889999987553
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEE-eecCC-CcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCC
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSD-GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSAD 279 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d 279 (353)
...........+ ..++++|.+..|+ +-... +.|..+++...... .+. ........-.+++++ +.+.++-...
T Consensus 150 --~~~l~~~~l~~P-~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~-~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 150 --RKVLLWQSLEKP-RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIA-DTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp --CEEEECTTCSCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ESC-CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred --eEEEEeCCCCCc-ceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EEE-ECCCCCcceEEEeCCCCEEEEEECCC
Confidence 222233333445 8999999655554 44444 77888887654211 111 111112233445544 4455555667
Q ss_pred CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
+.|..++++..... .+ +.........+++. . +.++++-...+.|...+..+++...
T Consensus 225 ~~I~~~~~dG~~~~-~~--~~~~~~~P~giav~-~----~~ly~td~~~~~V~~~~~~~G~~~~ 280 (349)
T 3v64_C 225 HVIERANLDGSHRK-AV--ISQGLPHPFAITVF-E----DSLYWTDWHTKSINSANKFTGKNQE 280 (349)
T ss_dssp TEEEEEETTSCSCE-EE--ECSSCSSEEEEEEE-T----TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CEEEEEeCCCCceE-EE--EeCCCCCceEEEEE-C----CEEEEecCCCCeEEEEEccCCCccE
Confidence 88999998754322 22 12223456778883 3 5667777777888888865555443
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.36 E-value=0.00057 Score=54.75 Aligned_cols=201 Identities=11% Similarity=0.006 Sum_probs=113.8
Q ss_pred CceEEEEEeC--CeEE-EecCCCcEEEEEcCC----ceeeeeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCC
Q 018591 129 DSISCLTVYN--GLIY-SGSWDKTLKVWRVAD----LKCLESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELG 198 (353)
Q Consensus 129 ~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~ 198 (353)
.....++|++ +.|+ +-..++.|..+++.. ......+...-.....+++. .+ .+++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 3567888886 4444 445568899999865 22222222222345677773 34 4555567889999998754
Q ss_pred CcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-C-CcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEEE
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-D-GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLCS 275 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~ 275 (353)
. ...........+ ..++++|.+..++.... . +.|..+++..... +...........-.++.+++. +.++
T Consensus 110 ~-----~~~~~~~~~~~P-~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--~~~~~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 110 K-----RKTLFRENGSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp S-----EEEEEECTTCCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred c-----eEEEEECCCCCc-ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--EEEEECCCCCceEEEEeccCCEEEEE
Confidence 3 222233233445 89999996665554443 2 6788888764321 111111112223344554444 4455
Q ss_pred ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 276 GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 276 ~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
-...+.|..+|++... ...+............+++. . +.++++-...+.|..++..+++...
T Consensus 182 D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~----~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-E----DKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp ETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-T----TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred ECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-C----CEEEEEECCCCeEEEEeCCCCcceE
Confidence 5567899999987533 22232221223346778775 3 5677777778899999876665443
No 272
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.33 E-value=0.00065 Score=54.02 Aligned_cols=189 Identities=14% Similarity=0.179 Sum_probs=99.8
Q ss_pred eCCeEEEecCC-----CcEEEEEcCCceee--eeccccCcceEEEEEeCCeEEEEcCCC-----cEEEEeCCCCCccccc
Q 018591 137 YNGLIYSGSWD-----KTLKVWRVADLKCL--ESIKAHDDAVNGLVASKGIVYSASADG-----KIKAWGKELGKSHCHS 204 (353)
Q Consensus 137 ~~~~l~~~~~d-----g~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~ 204 (353)
....++.|+.+ ..+.+||..+.+-. ..+......-....+.+..++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-- 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH-- 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEE--
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEee--
Confidence 33566667654 35888998765432 222222222223333555666666553 47788887765211
Q ss_pred ceeeeeccCCceeeEEEEcCCCCeEEeecCC-------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec
Q 018591 205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS 277 (353)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 277 (353)
...+...... .+++. -+++.++.|+.+ ..+.+||+.+.. +..............+...++.+++.|+
T Consensus 139 -~~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG 212 (302)
T 2xn4_A 139 -VAPMNTRRSS--VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVLNNLLYAVGG 212 (302)
T ss_dssp -ECCCSSCCBS--CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred -cCCCCCcccC--ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEECCEEEEECC
Confidence 1111111111 12222 256666666543 358889987763 3333333333333344455788888887
Q ss_pred CC-----CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC-----eEEEEEcCCCC
Q 018591 278 AD-----KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK-----SLRVWWVSKQS 340 (353)
Q Consensus 278 ~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~ 340 (353)
.+ ..+.+||+.+.+ ...+..+......-..+. .+ +++++.|+.++ .+.+||.++.+
T Consensus 213 ~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~--~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRNAGVCA--VN----GLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BSSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE--ET----TEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCcccceEEEEeCCCCC-EeeCCCCCCccccCeEEE--EC----CEEEEECCcCCCcccccEEEEcCCCCe
Confidence 64 468899988743 333433322111112222 24 78888888664 48889887653
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.32 E-value=0.00089 Score=55.56 Aligned_cols=227 Identities=11% Similarity=0.073 Sum_probs=130.0
Q ss_pred cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEe-cCCCcEEEEEcccCcc--ceeEEeecccccc
Q 018591 27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTA-HQDSRIRVWKVSRSSE--NVFRLVDTLPTTK 101 (353)
Q Consensus 27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~~w~~~~~~~--~~~~~~~~~~~~~ 101 (353)
.+|+.+.. ..|+..++........+.. ...+.+++|+ ++.|+.+ ...+.|+.++++.... .....
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~~~~-~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~-------- 153 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-------- 153 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEE--------
T ss_pred ceeEEecc-ceeEEEccCCcceeEeccc-cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEE--------
Confidence 34554443 6899999877665544443 4567889988 4555544 4567788888765320 00001
Q ss_pred ceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC
Q 018591 102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK 178 (353)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 178 (353)
..........+++.. +++++-...+.|.+.+++.......+...-.....|++.+
T Consensus 154 ----------------------~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 154 ----------------------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp ----------------------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred ----------------------EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 011223456677765 4444555678899998865444333333344578888843
Q ss_pred --CeEEEEc-C-CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccceeee
Q 018591 179 --GIVYSAS-A-DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVRWKLA 253 (353)
Q Consensus 179 --~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~ 253 (353)
+.|+.+. . .+.|...++.... ........-..+ ..+++++++..|+.+ ...+.|..+|+...... .+.
T Consensus 212 ~~g~ly~td~~~~~~I~~~~~dG~~-----~~~~~~~~l~~P-~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~ 284 (400)
T 3p5b_L 212 VHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TIL 284 (400)
T ss_dssp TTTEEEEEECSSSCCEEEEETTSCS-----CEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEE
T ss_pred ccCeEEEEeCCCCCEEEEEeCCCCc-----cEEEEECCCCce-EEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEE
Confidence 4554443 2 4778888887544 222223333445 899999877666655 45678999998754211 121
Q ss_pred eeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcce
Q 018591 254 CETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKL 293 (353)
Q Consensus 254 ~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~ 293 (353)
...........++.. +.++++-...+.|..+|..+++..
T Consensus 285 -~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 285 -EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp -ECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred -eCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCce
Confidence 111111223344444 556666677788999997777643
No 274
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.31 E-value=0.00064 Score=54.05 Aligned_cols=229 Identities=10% Similarity=0.141 Sum_probs=114.8
Q ss_pred ECCcEEEEEeCC----CcEEEEeCCCceeeEE--eccCceeeEEEEEeCCEEEEecCCC-----cEEEEEcccCccceeE
Q 018591 24 LCGEFILSASQG----KDIIVWQQPDLRMFTK--FGHGDGSVKAVVTVGNKVFTAHQDS-----RIRVWKVSRSSENVFR 92 (353)
Q Consensus 24 ~~~~~l~s~~~d----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~~w~~~~~~~~~~~ 92 (353)
+.+.+++.|+.+ ..+..+|+.+.+-... +......-..+...+..++.|+.++ .+.+||..+.. ..
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~---W~ 90 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ---WT 90 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE---EE
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc---ee
Confidence 345666667654 4688899877653322 1111111122233455666666543 57778876654 22
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCC-----cEEEEEcCCceee--eecc
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDK-----TLKVWRVADLKCL--ESIK 165 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~--~~~~ 165 (353)
.+..++.. ......+.+....++.|+.++ .+.+||+.+.+-. ..+.
T Consensus 91 ~~~~~p~~---------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p 143 (302)
T 2xn4_A 91 SVANMRDR---------------------------RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN 143 (302)
T ss_dssp EECCCSSC---------------------------CBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS
T ss_pred eCCCCCcc---------------------------ccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC
Confidence 33222211 001112223335566666543 5778888765432 2222
Q ss_pred ccCcceEEEEEeCCeEEEEcCC-------CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---
Q 018591 166 AHDDAVNGLVASKGIVYSASAD-------GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD--- 235 (353)
Q Consensus 166 ~~~~~v~~i~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 235 (353)
.......+..+.+..++.|+.+ ..+..||+.+.+-.. ...+...... .+++. -++++++.|+.+
T Consensus 144 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~ 217 (302)
T 2xn4_A 144 TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRSG--AGVGV-LNNLLYAVGGHDGPL 217 (302)
T ss_dssp SCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEE---ECCCSSCCBS--CEEEE-ETTEEEEECCBSSSS
T ss_pred CcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE---CCCCcccccc--ccEEE-ECCEEEEECCCCCCc
Confidence 2122222233344455666542 358889988765211 1111111111 12222 256677777654
Q ss_pred --CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCC-----eEEEEecCCC
Q 018591 236 --GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADK-----SIGIWKREAF 290 (353)
Q Consensus 236 --g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iw~~~~~ 290 (353)
..+.+||+.+.. +...............+..++.+++.|+.++ .+.+||+.+.
T Consensus 218 ~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 218 VRKSVEVYDPTTNA--WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ccceEEEEeCCCCC--EeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 368899988763 3333333322223334455788888887653 4889998864
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.30 E-value=0.0002 Score=63.75 Aligned_cols=234 Identities=8% Similarity=0.040 Sum_probs=115.5
Q ss_pred EEEE--CCcEEEEEeC-CCcEEEEeCCCceeeEEe--ccCceeeEEEEE-eCCEEEEec-CC-----CcEEEEEcccCcc
Q 018591 21 SLAL--CGEFILSASQ-GKDIIVWQQPDLRMFTKF--GHGDGSVKAVVT-VGNKVFTAH-QD-----SRIRVWKVSRSSE 88 (353)
Q Consensus 21 ~~~~--~~~~l~s~~~-dg~v~vwd~~~~~~~~~~--~~~~~~v~~~~~-~~~~l~s~~-~d-----g~i~~w~~~~~~~ 88 (353)
++++ ++++++.|+. +..+.+||..+.+-...- ......-.+... +++.++.|+ .+ ..+.+||..+..
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~- 325 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT- 325 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE-
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc-
Confidence 3444 5888888884 568999998776533221 211222233444 477788887 34 468999987654
Q ss_pred ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccC
Q 018591 89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHD 168 (353)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 168 (353)
+..+............ .. ....+...+..+......++.......+..||..+.........+.
T Consensus 326 --W~~~~~~~~~p~~~~~------------~~--~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~ 389 (656)
T 1k3i_A 326 --WTSLPNAKVNPMLTAD------------KQ--GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQ 389 (656)
T ss_dssp --EEEETTSCSGGGCCCC------------TT--GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECE
T ss_pred --ceeCCCcccccccccc------------cc--ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccc
Confidence 2222110000000000 00 0000111111111111122222234567888887655333221111
Q ss_pred ---------cceEEEEE---eCCeEEEEcCCC-----------cEEEEeCCCCCcccccceeee--eccCCceeeEEEEc
Q 018591 169 ---------DAVNGLVA---SKGIVYSASADG-----------KIKAWGKELGKSHCHSLKGIL--EGHKDVSLNSVVVS 223 (353)
Q Consensus 169 ---------~~v~~i~~---~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~ 223 (353)
..-.++.+ .+..++.|+.++ .+.+||..+... .... ..+....-.+.+..
T Consensus 390 ~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-----~~~~~~~mp~~R~~~~~~~l 464 (656)
T 1k3i_A 390 SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-----TVFASNGLYFARTFHTSVVL 464 (656)
T ss_dssp ETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-----EEECTTCCSSCCBSCEEEEC
T ss_pred cccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-----eEEccCCCCCCcccCCeEEC
Confidence 12234443 233666666432 577888776641 1111 11122112455677
Q ss_pred CCCCeEEeecCC-----------CcEEEeeccccccceeeeeeccccce--eEEEEEEcCcEEEEecC
Q 018591 224 DDGKWVYGGGSD-----------GFVMGWEGNVEIVRWKLACETKAHEM--AVLCVCLVGEFLCSGSA 278 (353)
Q Consensus 224 ~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~~ 278 (353)
|++++++.|+.+ ..+.+||..+.. +........... ....+.+++++++.|+.
T Consensus 465 ~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~--W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 465 PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc--eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 899999998854 468999998753 333222222221 12233458999999885
No 276
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.27 E-value=0.0009 Score=53.32 Aligned_cols=189 Identities=13% Similarity=0.126 Sum_probs=101.5
Q ss_pred EeCCeEEEecCC----CcEEEEEcCCcee--eeeccccCcceEEEEEeCCeEEEEcCC------CcEEEEeCCCCCcccc
Q 018591 136 VYNGLIYSGSWD----KTLKVWRVADLKC--LESIKAHDDAVNGLVASKGIVYSASAD------GKIKAWGKELGKSHCH 203 (353)
Q Consensus 136 ~~~~~l~~~~~d----g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~ 203 (353)
.....++.|+.+ ..+.+||..+.+- +..+......-..+...+..++.|+.+ ..+.+||..+.+-..
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~- 132 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT- 132 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE-
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe-
Confidence 334666677654 6788999877543 222322222222333344566666654 458889988765211
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecC---------CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGS---------DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC 274 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 274 (353)
...+...... .+++. -++++++.|+. -..+.+||..+.. +..............++..++++++
T Consensus 133 --~~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v 205 (306)
T 3ii7_A 133 --KPSMLTQRCS--HGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFVKDKIFA 205 (306)
T ss_dssp --ECCCSSCCBS--CEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEE
T ss_pred --CCCCcCCcce--eEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEECCEEEE
Confidence 1111111111 12222 25666666653 3458889988763 3333333333333344445778888
Q ss_pred EecCC-----CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----CeEEEEEcCCC
Q 018591 275 SGSAD-----KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----KSLRVWWVSKQ 339 (353)
Q Consensus 275 ~~~~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 339 (353)
.|+.+ ..+.+||+.+.+ ...+..+.........+.+ + +++++.|+.+ ..+.+||+++.
T Consensus 206 ~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 206 VGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV--G----SIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE--T----TEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE--C----CEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 87754 458899988743 3344333322222233333 4 7788888854 46888888765
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.23 E-value=0.0015 Score=54.25 Aligned_cols=204 Identities=12% Similarity=0.015 Sum_probs=117.4
Q ss_pred cCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCCc----eeeeeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCC
Q 018591 127 HADSISCLTVYN--GLIYSG-SWDKTLKVWRVADL----KCLESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKE 196 (353)
Q Consensus 127 ~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~ 196 (353)
....+..++|++ +.|+.. ...+.|+.+++... .....+.........+++. .+ ++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 345677899986 555544 45678888887642 2222232233456677773 34 55666677899999987
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec--CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEE-
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG--SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFL- 273 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l- 273 (353)
... ...........+ ..+++.|.+..|+... ..+.|...++...... .+.. .......-.++++++..|
T Consensus 190 g~~-----~~~l~~~~~~~P-~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~~~-~~l~~P~glavd~~~~~lY 261 (400)
T 3p5b_L 190 GVK-----RKTLFRENGSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVT-ENIQWPNGITLDLLSGRLY 261 (400)
T ss_dssp TCS-----EEEEEECSSCCE-EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-EEEC-SSCSCEEEEEEETTTTEEE
T ss_pred CCc-----eEEEEeCCCCCc-ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-EEEE-CCCCceEEEEEEeCCCEEE
Confidence 654 233333333445 8999999766655544 2467888887754211 1111 111122334455444444
Q ss_pred EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
++=...+.|..+|++.... ..+....+......++++.. +.++++-...+.|..++..+++.+..
T Consensus 262 ~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~-----~~lywtd~~~~~V~~~~~~~G~~~~~ 326 (400)
T 3p5b_L 262 WVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRLTGSDVNL 326 (400)
T ss_dssp EEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEET-----TEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred EEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEeC-----CEEEEecCCCCeEEEEEcCCCCceEE
Confidence 4545678999999875432 22322222233456777743 56666777778899898777655443
No 278
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.23 E-value=0.001 Score=52.26 Aligned_cols=185 Identities=12% Similarity=0.106 Sum_probs=121.5
Q ss_pred CCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC---CceeeEEE
Q 018591 146 WDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK---DVSLNSVV 221 (353)
Q Consensus 146 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~ 221 (353)
....+.++|+++.+.++.+.- ...|.-=.| +++.|+..+. ..|+-|++.... .+...+..|. +.-|....
T Consensus 85 ag~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s----~P~kvFdR~~~L~~~QIInY~ 158 (365)
T 2xzh_A 85 AGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVTD-NAVYHWSMEGES----QPVKMFDRHSSLAGCQIINYR 158 (365)
T ss_dssp ETTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEES-SEEEEEESSTTC----CCEEEEECCGGGTTCEEEEEE
T ss_pred cCCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEcC-CcEEEEcccCCC----CCceeeecchhcccceEEEEE
Confidence 368899999999988888765 456766677 7776666554 579999997643 2444444433 33346677
Q ss_pred EcCCCCeEEeecC-------CCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-----EEEEec---CCCeEEEEe
Q 018591 222 VSDDGKWVYGGGS-------DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-----FLCSGS---ADKSIGIWK 286 (353)
Q Consensus 222 ~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~---~dg~i~iw~ 286 (353)
.+++.++++..+- .|.+.+|..+.+ ..+.+.+|......+..+|+ +++-+. ..+.++|-+
T Consensus 159 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiE 233 (365)
T 2xzh_A 159 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 233 (365)
T ss_dssp ECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred ECCCCCEEEEEeEeccCCccceeEEEEeeccc-----ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence 7888888765432 377889988875 44556677666655555432 222222 236899999
Q ss_pred cCCC---cce-----EEe-ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 287 REAF---GKL-----CRV-GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 287 ~~~~---~~~-----~~~-~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
+... ... ..+ .....-.+-..++..++. ...+..-+.-|.|++||++++.++..-
T Consensus 234 i~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~k----ygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 234 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK----HDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp CSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETT----TTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cCCCCCCCCCcccccceeeCCccccCCceEEEEeccc----CCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 8543 110 000 111123455677888887 678888889999999999999887643
No 279
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.22 E-value=0.0012 Score=52.64 Aligned_cols=227 Identities=11% Similarity=0.049 Sum_probs=117.3
Q ss_pred CcEEEEEeC--CCcEEEEeCCCceeeEE--eccCceeeEEEEEeCCEEEEecCC----CcEEEEEcccCccceeEEeecc
Q 018591 26 GEFILSASQ--GKDIIVWQQPDLRMFTK--FGHGDGSVKAVVTVGNKVFTAHQD----SRIRVWKVSRSSENVFRLVDTL 97 (353)
Q Consensus 26 ~~~l~s~~~--dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d----g~i~~w~~~~~~~~~~~~~~~~ 97 (353)
+.+++.|+. ...+.+||..+.+-... +......-.++...+..++.|+.+ ..+.+||+.+.. ...+..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~---W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS---WYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE---EEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe---EEECCCC
Confidence 345556654 35788999877653321 222122222333446666667654 467778876654 2233322
Q ss_pred ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCC------CcEEEEEcCCceeee--eccccCc
Q 018591 98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWD------KTLKVWRVADLKCLE--SIKAHDD 169 (353)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~--~~~~~~~ 169 (353)
+.. ......+.+....++.|+.+ ..+.+||..+.+-.. .+.....
T Consensus 89 p~~---------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 141 (306)
T 3ii7_A 89 PTP---------------------------RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC 141 (306)
T ss_dssp SSC---------------------------CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred Ccc---------------------------ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc
Confidence 211 01112223333566677655 468899987754322 2221111
Q ss_pred ceEEEEEeCCeEEEEcC---------CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----
Q 018591 170 AVNGLVASKGIVYSASA---------DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----- 235 (353)
Q Consensus 170 ~v~~i~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 235 (353)
.-.++...+..++.|+. -..+.+||+.+..-.. ...+...... .+++.. ++++++.|+.+
T Consensus 142 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~~--~~~~~~-~~~i~v~GG~~~~~~~ 215 (306)
T 3ii7_A 142 SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE---LCPMIEARKN--HGLVFV-KDKIFAVGGQNGLGGL 215 (306)
T ss_dssp SCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE---ECCCSSCCBS--CEEEEE-TTEEEEECCEETTEEB
T ss_pred eeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE---CCCccchhhc--ceEEEE-CCEEEEEeCCCCCCCC
Confidence 22223334445555553 3458899988775211 1111111111 122222 56677777654
Q ss_pred CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEEEEecCCC
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIGIWKREAF 290 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iw~~~~~ 290 (353)
..+.+||+.+. .+.....+........++..++.+++.|+.+ ..+.+||+.+.
T Consensus 216 ~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 216 DNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCEEEEETTTT--EEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ceEEEeeCCCC--cEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 35888998876 3444333333333344555578888888854 56888998774
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.20 E-value=0.0013 Score=52.39 Aligned_cols=237 Identities=11% Similarity=0.060 Sum_probs=124.9
Q ss_pred CceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccccee
Q 018591 45 DLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR 122 (353)
Q Consensus 45 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (353)
..+.+..+... .....++++ ++.+++-..++.|..||.+... ... .
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~---~~~---~------------------------- 68 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ---QIH---A------------------------- 68 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE---EEE---E-------------------------
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce---EEE---E-------------------------
Confidence 34455555432 345677786 5555555577888888765431 000 0
Q ss_pred eeeecCCceEEEEEeC-CeEEEecC--CC-cEEEEEcCCceeeeeccc-cCcceEEEEE-eCCeEE-EEcCCCcEEEEeC
Q 018591 123 LWIEHADSISCLTVYN-GLIYSGSW--DK-TLKVWRVADLKCLESIKA-HDDAVNGLVA-SKGIVY-SASADGKIKAWGK 195 (353)
Q Consensus 123 ~~~~~~~~i~~~~~~~-~~l~~~~~--dg-~v~iwd~~~~~~~~~~~~-~~~~v~~i~~-~~~~l~-~~~~dg~i~iwd~ 195 (353)
........+++.+ ..++++.. ++ .|..+|..+++....... .......++. .++.++ +-..++.|..+|.
T Consensus 69 ---~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 69 ---TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp ---ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred ---eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence 1123567788887 44454442 22 477777777664332211 1222344444 444444 4445888999987
Q ss_pred CCCCcccc---ccee--eeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeeccc-cccc-eeeeeeccccceeEEEEE
Q 018591 196 ELGKSHCH---SLKG--ILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGNV-EIVR-WKLACETKAHEMAVLCVC 267 (353)
Q Consensus 196 ~~~~~~~~---~~~~--~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~-~~~~-~~~~~~~~~~~~~v~~~~ 267 (353)
..++.... .... ........+ +.+ +|+++.|+. -...+.|..|++.. +... ....... ....-.++.
T Consensus 146 ~~~~~~v~~~~~~~~~~~~~~~~~~p-ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd 220 (306)
T 2p4o_A 146 VQPSGSIWLEHPMLARSNSESVFPAA-NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFD 220 (306)
T ss_dssp TTTEEEEEEECGGGSCSSTTCCSCSE-EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEB
T ss_pred CCCcEeEEEECCccccccccCCCCcC-CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEEC
Confidence 65421000 0000 000111222 555 788876554 45678899999875 2110 1111111 112235566
Q ss_pred EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee---cCCCCCCeEEEEccC
Q 018591 268 LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS---PNAVGGGFLLYSGSL 327 (353)
Q Consensus 268 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~~~l~s~~~ 327 (353)
.+|+++++....+.|.+++.. ++. ..+..+.......++++|. |+ +..|+.++.
T Consensus 221 ~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~~~~~p~~~a~~g~~~d----~~~LyVt~~ 277 (306)
T 2p4o_A 221 VEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQGVIGSTAVAFGQTEGD----CTAIYVVTN 277 (306)
T ss_dssp TTCCEEEECBTTCCEEEECTT-CCE-EEEECGGGTCTTEEEEEECCSTTT----TTEEEEEEC
T ss_pred CCCCEEEEeCCCCeEEEECCC-CCE-EEEeecccccCCceEEEEecccCC----CCEEEEECC
Confidence 678887777778899999975 332 1232233233568999998 77 555555443
No 281
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.18 E-value=0.0048 Score=58.27 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=48.7
Q ss_pred cCceEEEEEC--------CcEEEEEeC-CCcEEEEeCCCceeeEEeccC-ceeeEEEEEe----CCEEEEecCCCcEEEE
Q 018591 16 VGSVSSLALC--------GEFILSASQ-GKDIIVWQQPDLRMFTKFGHG-DGSVKAVVTV----GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 16 ~~~v~~~~~~--------~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~----~~~l~s~~~dg~i~~w 81 (353)
...|.|+++. .++++.|.. |++|+|+++++.+.+....-. .....++.+. ..+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4579999984 369999997 999999999987766543221 1233344332 3478888899998777
Q ss_pred Eccc
Q 018591 82 KVSR 85 (353)
Q Consensus 82 ~~~~ 85 (353)
.++.
T Consensus 633 ~~d~ 636 (1158)
T 3ei3_A 633 GLNI 636 (1158)
T ss_dssp EECT
T ss_pred EEcC
Confidence 6653
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.18 E-value=0.0011 Score=50.72 Aligned_cols=202 Identities=9% Similarity=-0.022 Sum_probs=119.5
Q ss_pred ecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeecccc-CcceEEEEE-eCCeE-EEEcCCCcEEEEeCCCCC
Q 018591 126 EHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAH-DDAVNGLVA-SKGIV-YSASADGKIKAWGKELGK 199 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~-~~~~l-~~~~~dg~i~iwd~~~~~ 199 (353)
+-...+..++++| + ++++...++.|...|.. ++.++.+.-. ....-.|++ .++.+ ++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 4556799999997 4 55557788999999987 8877776321 245677888 45544 444467789998876554
Q ss_pred cccccceeee---eccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc--ccceeeeee--c--cccceeEEEEEEc-
Q 018591 200 SHCHSLKGIL---EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE--IVRWKLACE--T--KAHEMAVLCVCLV- 269 (353)
Q Consensus 200 ~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~--~--~~~~~~v~~~~~~- 269 (353)
.........+ ......-...++++|.++.|+++.......+|.+... ......... + ........+++++
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 2100000101 1122222489999999988887776666666666421 000111100 0 0111123344443
Q ss_pred --CcEEEEecCCCeEEEEecCCCcceEEecccc-CCC------cCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 270 --GEFLCSGSADKSIGIWKREAFGKLCRVGAIT-GHE------GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 270 --~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~h~------~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
+.+++....++.+..+|... + +.....+. +.. ...-.|+|.++ |++.++ ++-+.++.+.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~----G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRGLSHNIKQAEGVAMDAS----GNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGGCSSCCCSEEEEEECTT----CCEEEE-ETTTEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCCcccccCCCCeeEECCC----CCEEEE-cCCceEEEEE
Confidence 77888888899999999764 3 22333333 221 25688999999 875555 6666555554
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.0023 Score=53.66 Aligned_cols=196 Identities=7% Similarity=0.030 Sum_probs=103.1
Q ss_pred CceEEEEEeC--CeEEEecC-CC----cEEEEEcCCceee--eeccccCcceEEEEEeC--Ce-EEEEcCCCcEEEEeCC
Q 018591 129 DSISCLTVYN--GLIYSGSW-DK----TLKVWRVADLKCL--ESIKAHDDAVNGLVASK--GI-VYSASADGKIKAWGKE 196 (353)
Q Consensus 129 ~~i~~~~~~~--~~l~~~~~-dg----~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~--~~-l~~~~~dg~i~iwd~~ 196 (353)
.....+++++ +.|+++.. ++ .+...+. .+... ..+.. ......+++.+ +. +++-..++.|..++..
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 4567888887 53555543 22 2333443 33221 22221 23345677743 44 4455567889999987
Q ss_pred CCCcccccceeeeec-cCCceeeEEEEcCCCCe-EEeecCCCcEEEeeccccccce----eeeeec--cc----------
Q 018591 197 LGKSHCHSLKGILEG-HKDVSLNSVVVSDDGKW-VYGGGSDGFVMGWEGNVEIVRW----KLACET--KA---------- 258 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~----~~~~~~--~~---------- 258 (353)
... ....... ....+ ..++|+|++++ +++-...+.|..++........ ...... .+
T Consensus 257 ~~~-----~~~~~~~~~~~~P-~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~ 330 (430)
T 3tc9_A 257 TQE-----TTPLFTIQDSGWE-FHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKAR 330 (430)
T ss_dssp TTE-----EEEEEECSSSSCC-EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCB
T ss_pred CCc-----EEEEEEcCCCCcc-eeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceE
Confidence 654 2112221 12334 88999999994 4555567889998766421110 011000 00
Q ss_pred ccee--EEEEE--------EcCcEEEEecCCCeEEEEecCCCcceEEeccc-----cC----------CCcCeEEEEeec
Q 018591 259 HEMA--VLCVC--------LVGEFLCSGSADKSIGIWKREAFGKLCRVGAI-----TG----------HEGPVKCLQASP 313 (353)
Q Consensus 259 ~~~~--v~~~~--------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~----------h~~~v~~~~~~~ 313 (353)
...+ ...+. .++.++++=..++.|+.++. ++. ...+.-. .+ .-.....|+++|
T Consensus 331 ~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 408 (430)
T 3tc9_A 331 MHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE 408 (430)
T ss_dssp BSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred eCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence 0111 22232 12456666566778888884 332 1111110 01 012578999999
Q ss_pred CCCCCCeEEEEccCCCeEEEEEcC
Q 018591 314 NAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 314 ~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
+ ++.++++-..+..|+.++++
T Consensus 409 ~---~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 409 E---RECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp T---TTEEEEEEGGGTEEEEEEEC
T ss_pred C---CCEEEEEECCCCeEEEEccC
Confidence 3 16777776777888888764
No 284
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.15 E-value=0.0017 Score=51.82 Aligned_cols=187 Identities=12% Similarity=0.110 Sum_probs=98.0
Q ss_pred CeEEEecC----C-----CcEEEEEcCCceeee--eccccCcceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCCccc
Q 018591 139 GLIYSGSW----D-----KTLKVWRVADLKCLE--SIKAHDDAVNGLVASKGIVYSASAD-----GKIKAWGKELGKSHC 202 (353)
Q Consensus 139 ~~l~~~~~----d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 202 (353)
..++.|+. + ..+.+||..+.+-.. .+......-....+.+..++.|+.+ ..+.+||+.+.+-..
T Consensus 72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 151 (308)
T 1zgk_A 72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL 151 (308)
T ss_dssp EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEE
T ss_pred EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeE
Confidence 55566654 2 468889987654322 2222122222233344456666543 358889988765211
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS 277 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 277 (353)
.. .+....... ..+.+ ++++++.|+.+ ..+.+||+.+.. +..............++..++.+++.|+
T Consensus 152 ~~---~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG 223 (308)
T 1zgk_A 152 VA---PMLTRRIGV-GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVLHNCIYAAGG 223 (308)
T ss_dssp CC---CCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred CC---CCCccccce-EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEECCEEEEEeC
Confidence 11 111111111 22222 56677777654 458889987763 3333333322333344455788888887
Q ss_pred CC-----CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----CeEEEEEcCCCC
Q 018591 278 AD-----KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----KSLRVWWVSKQS 340 (353)
Q Consensus 278 ~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~ 340 (353)
.+ ..+.+||+.+.+ ...+..+.........+.+ + +++++.|+.+ ..+.+||+++.+
T Consensus 224 ~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETET-WTFVAPMKHRRSALGITVH--Q----GRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BCSSSBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--T----TEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCccceEEEEeCCCCc-EEECCCCCCCccceEEEEE--C----CEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 64 568999988743 3333333222222222222 4 7788888754 357888887653
No 285
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.14 E-value=0.0018 Score=51.65 Aligned_cols=231 Identities=10% Similarity=0.081 Sum_probs=116.4
Q ss_pred EEECCcEEEEEeCC----CcEEEEeCCCceeeEE--eccCceeeEEEEEeCCEEEEecC----C-----CcEEEEEcccC
Q 018591 22 LALCGEFILSASQG----KDIIVWQQPDLRMFTK--FGHGDGSVKAVVTVGNKVFTAHQ----D-----SRIRVWKVSRS 86 (353)
Q Consensus 22 ~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~----d-----g~i~~w~~~~~ 86 (353)
+.+++.+++.|+.+ ..+.++|..+.+-... +......-..+...+..++.|+. + ..+.+||+.+.
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 33457777777742 4688999877653322 11111111222333555666665 2 35777887665
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCC-----CcEEEEEcCCceee
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWD-----KTLKVWRVADLKCL 161 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~ 161 (353)
. ...+..++.. ......+.+....++.|+.+ ..+.+||..+.+-.
T Consensus 101 ~---W~~~~~~p~~---------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 101 Q---WSPCAPMSVP---------------------------RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH 150 (308)
T ss_dssp E---EEECCCCSSC---------------------------CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEE
T ss_pred e---EeECCCCCcC---------------------------ccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEe
Confidence 4 2222222211 01111222333555666543 46888998765432
Q ss_pred e--eccccCcceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC
Q 018591 162 E--SIKAHDDAVNGLVASKGIVYSASAD-----GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS 234 (353)
Q Consensus 162 ~--~~~~~~~~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 234 (353)
. .+......-.++.+.+..++.|+.+ ..+..||+.+.+-... ..+....... ..+.+ ++++++.|+.
T Consensus 151 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~-~~~~~--~~~iyv~GG~ 224 (308)
T 1zgk_A 151 LVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGA-GVCVL--HNCIYAAGGY 224 (308)
T ss_dssp ECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSSCCBSC-EEEEE--TTEEEEECCB
T ss_pred ECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC---CCCCCccccc-eEEEE--CCEEEEEeCC
Confidence 2 2222122222233344466666654 4588899877652111 1111111111 22222 5667777765
Q ss_pred C-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEEEEecCCC
Q 018591 235 D-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIGIWKREAF 290 (353)
Q Consensus 235 d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iw~~~~~ 290 (353)
+ ..+.+||+.+. .+.....+........++..++++++.|+.+ ..+.+||+.+.
T Consensus 225 ~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 225 DGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCccceEEEEeCCCC--cEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 4 46889998876 3333333333233334444578888888754 45788888764
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.12 E-value=0.002 Score=51.42 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=111.0
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCe--------E-EEEc-C--CCcEEEEeCC--CCCccccc
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGI--------V-YSAS-A--DGKIKAWGKE--LGKSHCHS 204 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--------l-~~~~-~--dg~i~iwd~~--~~~~~~~~ 204 (353)
.+++.....+-+.+||+ +++.++.+.. +.++.+...+++ + ++.. . +++|.+|++. +..
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----- 112 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----- 112 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-----
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-----
Confidence 56676777789999999 8888888753 567777764432 3 3333 3 5789999774 332
Q ss_pred ceeeee-------ccCCceeeEEEE--cCC-CC-eEEeecCCCcEEEeeccc---cccceeeeeeccccceeEEEEEE--
Q 018591 205 LKGILE-------GHKDVSLNSVVV--SDD-GK-WVYGGGSDGFVMGWEGNV---EIVRWKLACETKAHEMAVLCVCL-- 268 (353)
Q Consensus 205 ~~~~~~-------~~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~-- 268 (353)
..... .....+ ..+++ +|. ++ ++++...+|.+..|++.. +....+....+..... +-.+..
T Consensus 113 -l~~i~~~~~pv~t~~~~p-yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq-~EgcvvDd 189 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEV-YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ-TEGMAADD 189 (355)
T ss_dssp -EEECSCTTSCEECCCSSC-CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC-EEEEEEET
T ss_pred -eeeccccccCcCCCCCCe-eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC-cceEEEcC
Confidence 11111 111223 66777 774 43 688888999999999843 2233344555444332 323333
Q ss_pred cCcEEEEecCCCeEEEEecCCCc--ceEEeccc-cCC-CcCeEEEEeecCCCCCCe-EEEEcc-CCCeEEEEEcC
Q 018591 269 VGEFLCSGSADKSIGIWKREAFG--KLCRVGAI-TGH-EGPVKCLQASPNAVGGGF-LLYSGS-LDKSLRVWWVS 337 (353)
Q Consensus 269 ~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~-~~h-~~~v~~~~~~~~~~~~~~-~l~s~~-~dg~i~iw~~~ 337 (353)
....|+.+-++.-|..++.+... ....+... .++ ...+..|++-+... ++ +|++++ .+.+..+|+.+
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~--g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD--GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG--GCEEEEEEEGGGTEEEEEESS
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC--CCEEEEEEcCCCCEEEEEECC
Confidence 36788888888777666744221 22233332 122 23688888854322 33 455444 67799999997
No 287
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.12 E-value=0.0022 Score=52.38 Aligned_cols=140 Identities=9% Similarity=-0.025 Sum_probs=67.5
Q ss_pred CcEEEEEcCCcee--eeeccccCcceEEEEE-eCCeEEEEcC------CCcEEEEeC--CCCCcccccceeeeeccCCce
Q 018591 148 KTLKVWRVADLKC--LESIKAHDDAVNGLVA-SKGIVYSASA------DGKIKAWGK--ELGKSHCHSLKGILEGHKDVS 216 (353)
Q Consensus 148 g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~-~~~~l~~~~~------dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~ 216 (353)
..+.+||..+.+- +..+......-.+++. .+..++.|+. ...+..||+ .+.. .. ....+.......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~--W~-~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK--WN-KLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE--EE-ECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc--EE-ecCCCCCCcccc
Confidence 5789999876543 3333211111123333 4445556553 345777876 3332 11 111111111111
Q ss_pred eeEEEEcCCCCeEEeecCC----------------------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591 217 LNSVVVSDDGKWVYGGGSD----------------------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC 274 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 274 (353)
...+...++++++.|+.+ ..+.+||+.+. .|.....+........++..++++++
T Consensus 245 -~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v 321 (357)
T 2uvk_A 245 -GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG--KWDKSGELSQGRAYGVSLPWNNSLLI 321 (357)
T ss_dssp -SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBSSEEEEETTEEEE
T ss_pred -cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC--ceeeCCCCCCCcccceeEEeCCEEEE
Confidence 111223356677777632 25778888865 34444444433333445567788888
Q ss_pred EecCCC------eEEEEecCCCcce
Q 018591 275 SGSADK------SIGIWKREAFGKL 293 (353)
Q Consensus 275 ~~~~dg------~i~iw~~~~~~~~ 293 (353)
.|+.++ .|.++++++++..
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 888643 4666688876643
No 288
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.09 E-value=0.0028 Score=51.92 Aligned_cols=184 Identities=11% Similarity=0.103 Sum_probs=123.3
Q ss_pred CCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC---CceeeEEE
Q 018591 146 WDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK---DVSLNSVV 221 (353)
Q Consensus 146 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~ 221 (353)
....+.++|+++.+.++.+... ..|.-=.| +++.|+..+. ..|+-|++.... .+...+..|. +.-|....
T Consensus 84 ag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~lVT~-taVyHWsi~~~s----~P~kvFdR~~~L~~~QIInY~ 157 (494)
T 1bpo_A 84 AGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVTD-NAVYHWSMEGES----QPVKMFDRHSSLAGCQIINYR 157 (494)
T ss_dssp ETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEEECS-SEEEEEESSSSC----CCEEEEECCGGGTTCEEEEEE
T ss_pred cCCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEEEcC-CeeEEecccCCC----CchhheecchhcccceEEEEE
Confidence 3689999999999888887653 45666666 8887776654 589999997633 2444444433 33346777
Q ss_pred EcCCCCeEEeec-------CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-----EEEEecC---CCeEEEEe
Q 018591 222 VSDDGKWVYGGG-------SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-----FLCSGSA---DKSIGIWK 286 (353)
Q Consensus 222 ~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~---dg~i~iw~ 286 (353)
.+++.++++..+ -.|.+.+|..+.+ ....+.+|......+..+|+ +++-+.. .+.++|.+
T Consensus 158 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~E 232 (494)
T 1bpo_A 158 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 232 (494)
T ss_dssp ECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEE
T ss_pred ECCCCCeEEEEeecccCCcccceEEEeecccc-----ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence 788898877543 2477889988875 45566777776666665532 3333322 37899999
Q ss_pred cCCC---cc-----eEEe-ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 287 REAF---GK-----LCRV-GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 287 ~~~~---~~-----~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
+... .. ...+ .....-.+-..++..++. ...+..-+.-|.|++||++++.++..
T Consensus 233 i~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k----ygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 233 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK----HDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp CSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT----TTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cCCCccCCCCccceeeeeeCCcccccCceeEEEeccc----CCEEEEEecCceEEEEecccceeeee
Confidence 8643 10 0011 011123455678888888 67888888999999999999988764
No 289
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.04 E-value=0.0029 Score=50.61 Aligned_cols=226 Identities=12% Similarity=0.072 Sum_probs=124.9
Q ss_pred EEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE-EecCCCcEEEEEcccCcc-ceeEEeecccccccee
Q 018591 29 ILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSE-NVFRLVDTLPTTKDYL 104 (353)
Q Consensus 29 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~ 104 (353)
|+.+.. ..|+..|+.+.+....+.. .....++.|+ ++.|+ +-..++.|..++++.... .....+
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~---------- 71 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---------- 71 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE----------
T ss_pred EEEECC-CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE----------
Confidence 444433 5799999988776655543 3456788887 44555 445567888888765210 000000
Q ss_pred eeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CC
Q 018591 105 GKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG 179 (353)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~ 179 (353)
+.........+++.+ +.| ++-...+.|.+.++........+.........+++. .+
T Consensus 72 -------------------~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 72 -------------------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG 132 (316)
T ss_dssp -------------------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred -------------------EeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC
Confidence 001112335667764 444 454667889999986543332233233466888884 34
Q ss_pred eEEEEcC-C-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccceeeeeec
Q 018591 180 IVYSASA-D-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVRWKLACET 256 (353)
Q Consensus 180 ~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~ 256 (353)
.++.+.. . +.|...++.... ...........+ ..++++|++..|+.+ ...+.|..+|+..... ..+. ..
T Consensus 133 ~ly~~d~~~~~~I~~~~~dG~~-----~~~~~~~~~~~P-~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~-~~ 204 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL-ED 204 (316)
T ss_dssp EEEEEECSSSCEEEEEETTSCC-----EEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-EC
T ss_pred EEEEEccCCCCeEEEEcCCCCC-----eEEEEECCCCCc-eEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEe-ec
Confidence 4444433 3 678888876443 111122223344 899999876666544 4567899999875321 1111 11
Q ss_pred cccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcce
Q 018591 257 KAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKL 293 (353)
Q Consensus 257 ~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~ 293 (353)
.........++.+ +.++++-...+.|..++..+++..
T Consensus 205 ~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 205 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcce
Confidence 1111122333334 566666667889999998776643
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.04 E-value=0.0041 Score=52.14 Aligned_cols=196 Identities=9% Similarity=0.015 Sum_probs=101.4
Q ss_pred CceEEEEEeC-CeEEEecCCC-----cEEEEEcCCcee-eeeccccCcceEEEEEe--CCeEE-EEcCCCcEEEEeCCCC
Q 018591 129 DSISCLTVYN-GLIYSGSWDK-----TLKVWRVADLKC-LESIKAHDDAVNGLVAS--KGIVY-SASADGKIKAWGKELG 198 (353)
Q Consensus 129 ~~i~~~~~~~-~~l~~~~~dg-----~v~iwd~~~~~~-~~~~~~~~~~v~~i~~~--~~~l~-~~~~dg~i~iwd~~~~ 198 (353)
.....+++++ ..|+.+...+ .+...+...... ...+. .......+++. ++.|+ +-..++.|+.+|..++
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 3567888888 3355554322 133333221110 01111 12334556663 34555 4445678999998766
Q ss_pred Ccccccc-eeeeecc-CCceeeEEEEcCCCCeE-EeecCCCcEEEeeccccccce----eeeeec--cc---------cc
Q 018591 199 KSHCHSL-KGILEGH-KDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIVRW----KLACET--KA---------HE 260 (353)
Q Consensus 199 ~~~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~----~~~~~~--~~---------~~ 260 (353)
. . ....... .... ..++++|++++| ++-...+.|+.++........ ...... .+ .-
T Consensus 261 ~-----~~~~~~~~~~~~~~-~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 334 (433)
T 4hw6_A 261 T-----LTEEEVMMDTKGSN-FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARL 334 (433)
T ss_dssp C-----EEEEEEECSCCSSC-EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBC
T ss_pred e-----EEEEEeccCCCCCc-ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEE
Confidence 5 2 1111111 1222 569999999854 455567889998765321110 111100 00 00
Q ss_pred eeEEEEEE-----------cCcEEEEecCCCeEEEEecCCCcceEEeccc-----cC----------CCcCeEEEEee-c
Q 018591 261 MAVLCVCL-----------VGEFLCSGSADKSIGIWKREAFGKLCRVGAI-----TG----------HEGPVKCLQAS-P 313 (353)
Q Consensus 261 ~~v~~~~~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~----------h~~~v~~~~~~-~ 313 (353)
.....+++ +++++++-..++.|+.++. ++. ...+.-. .+ .-.....|+++ +
T Consensus 335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 412 (433)
T 4hw6_A 335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK 412 (433)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence 11223333 3666677677888999985 332 1111100 00 11247889999 5
Q ss_pred CCCCCCeEEEEccCCCeEEEEEcC
Q 018591 314 NAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 314 ~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
+ +.++++-..++.|+..+++
T Consensus 413 ~----g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 413 R----KCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp T----TEEEEEEGGGTEEEEEEEC
T ss_pred C----CEEEEEeCCCCEEEEEecC
Confidence 5 7777777778889888765
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.03 E-value=0.0031 Score=50.41 Aligned_cols=220 Identities=12% Similarity=0.041 Sum_probs=123.7
Q ss_pred CCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeeccccccceeeeecc
Q 018591 35 GKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMK 109 (353)
Q Consensus 35 dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (353)
...|+..++.... ....+. ......++.|+ ++.| ++-...+.|..++++..........
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--------------- 75 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--------------- 75 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE---------------
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc---------------
Confidence 3578999987653 222222 23456688887 3444 4555667888888876531111000
Q ss_pred cceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEEE
Q 018591 110 QSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYSA 184 (353)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~~ 184 (353)
........+++.+ + ++++-...+.|.+++++.......+.........+++. .+.++.+
T Consensus 76 ----------------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~t 139 (318)
T 3sov_A 76 ----------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWT 139 (318)
T ss_dssp ----------------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEE
T ss_pred ----------------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 1112344566664 3 44455566789999986433222222334556788884 3455544
Q ss_pred c--CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeeccccccceeeeeeccccce
Q 018591 185 S--ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGNVEIVRWKLACETKAHEM 261 (353)
Q Consensus 185 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (353)
. ..+.|...++.... ........-..+ +.++++|++..|+. -...+.|..+|+...... .+.. ....
T Consensus 140 d~~~~~~I~r~~~dG~~-----~~~~~~~~l~~P-nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~---~~~~ 209 (318)
T 3sov_A 140 DWGEVPKIERAGMDGSS-----RFIIINSEIYWP-NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVK---GSLP 209 (318)
T ss_dssp ECSSSCEEEEEETTSCS-----CEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC---SCCS
T ss_pred ecCCCCEEEEEEcCCCC-----eEEEEECCCCCc-cEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEec---CCCC
Confidence 4 35778888876443 122222223345 89999996665554 455678999998753211 1211 1122
Q ss_pred eEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEe
Q 018591 262 AVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 262 ~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
....++.+ +.++.+-...+.|..++..+++....+
T Consensus 210 ~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 210 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 23344444 556666667889999998777643333
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.00 E-value=0.0083 Score=54.25 Aligned_cols=203 Identities=12% Similarity=0.038 Sum_probs=112.3
Q ss_pred cCCceEEEEEeC--CeE-EEecCCCcEEEEEcCCc----eeeeeccccCcceEEEEEe--C-CeEEEEcCCCcEEEEeCC
Q 018591 127 HADSISCLTVYN--GLI-YSGSWDKTLKVWRVADL----KCLESIKAHDDAVNGLVAS--K-GIVYSASADGKIKAWGKE 196 (353)
Q Consensus 127 ~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~~--~-~~l~~~~~dg~i~iwd~~ 196 (353)
....+..+++++ +.| ++-...+.|+.+++... .....+.........|++. . +++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 344567888886 444 44455678888888642 2222232223445567762 3 366666778899999987
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-C-CCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEE
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-S-DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFL 273 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l 273 (353)
... ...........+ ..|++.|.+.+|+... . .+.|...++...... .+. ........-+++.+. ++++
T Consensus 502 G~~-----~~~l~~~~l~~P-~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv-~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 502 GVK-----RKTLFRENGSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV-TENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp SSS-----EEEEEECTTCCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEE-CSSCSCEEEEEEETTTTEEE
T ss_pred CCe-----EEEEEeCCCCCc-ceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEE-eCCCCCceEEEEecCCCeEE
Confidence 654 222333333445 8999999765555544 2 267888888654211 111 111112223444444 4444
Q ss_pred EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
++=...+.|..+++...... .+..-.+.-....+|++.. +.++++-...+.|...+..+++.+.
T Consensus 574 waD~~~~~I~~~d~dG~~~~-~v~~~~~~l~~P~glav~~-----~~lYwtD~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRLTGSDVN 637 (791)
T ss_dssp EEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEEEEET-----TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEeCCCCcEEEEecCCCceE-EEecCCCccCCCCEEEEeC-----CEEEEEECCCCEEEEEeCCCCcceE
Confidence 55456778999998754432 2221111223345677643 4555665667788888766665443
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.99 E-value=0.0086 Score=54.15 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=129.2
Q ss_pred eEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE-EecCCCcEEEEEcccCcc--ceeE
Q 018591 19 VSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSE--NVFR 92 (353)
Q Consensus 19 v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~--~~~~ 92 (353)
-++.+.+ ..+|+.+. ...|+..++...+....+.. ...+.+|+++ .+.|+ +-...+.|+.++++.... ....
T Consensus 387 ~~C~~~~~~p~Ll~an-~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 387 KACKAVGSIAYLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp CCCEETTSCCEEEEEC-BSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred ceeeeccccccccccc-ccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence 3444444 23444333 35788888876655544443 4566788887 44444 545567788888765321 0000
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDD 169 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 169 (353)
.+ .........|++.. +++++-...+.|.+.++........+...-.
T Consensus 465 vi------------------------------~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~ 514 (791)
T 3m0c_C 465 VI------------------------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS 514 (791)
T ss_dssp EE------------------------------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC
T ss_pred EE------------------------------ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC
Confidence 11 01223344666664 4555556678899999865443333333345
Q ss_pred ceEEEEEeC--CeEEEEc-CC-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeecc
Q 018591 170 AVNGLVASK--GIVYSAS-AD-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGN 244 (353)
Q Consensus 170 ~v~~i~~~~--~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~ 244 (353)
....|++.+ +.|+.+. .. +.|...++.... ...........+ ..|++++.+..|+.+ ...+.|..+++.
T Consensus 515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-----~~~lv~~~l~~P-~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----EEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-----eEEEEeCCCCCc-eEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 578898843 4554443 33 678888887554 222333333455 899999876666555 455688888886
Q ss_pred ccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcce
Q 018591 245 VEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKL 293 (353)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~ 293 (353)
..... .+... .........++.. +.++++-...+.|...+..+++..
T Consensus 589 G~~~~-~v~~~-~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 589 GGNRK-TILED-EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp SCSCE-EEEEC-TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CCceE-EEecC-CCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcce
Confidence 54221 22111 1111223455555 445555566788888887666543
No 294
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.99 E-value=0.0036 Score=49.79 Aligned_cols=202 Identities=13% Similarity=0.077 Sum_probs=111.6
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC--c
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS--R 77 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~ 77 (353)
...+.+..+..+ .....++++ ++++++-..++.|..||... +....+.. ......++++ ++.+++..... .
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcce
Confidence 345556666543 457789996 67777666789999999765 33333332 3467788887 55444433222 3
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEE-EecCCCcEEEEEc
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIY-SGSWDKTLKVWRV 155 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~-~~~~dg~v~iwd~ 155 (353)
|..++..+++. ..+...+. ......++..+ ..++ +-..++.|..+|.
T Consensus 97 v~~~d~~~g~~---~~~~~~~~----------------------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 97 VVSLVKSDGTV---ETLLTLPD----------------------------AIFLNGITPLSDTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp EEEEECTTSCE---EEEEECTT----------------------------CSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred EEEEcCCCCeE---EEEEeCCC----------------------------ccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence 55556555441 11111110 01112222233 3333 4345788989987
Q ss_pred CCcee-ee---------eccccCcceEEEEEeCC-eEEEEcCCCcEEEEeCCC-CCcccccceeeeeccCCceeeEEEEc
Q 018591 156 ADLKC-LE---------SIKAHDDAVNGLVASKG-IVYSASADGKIKAWGKEL-GKSHCHSLKGILEGHKDVSLNSVVVS 223 (353)
Q Consensus 156 ~~~~~-~~---------~~~~~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (353)
.+++. +. .....-...+.+...++ .+++-...+.|..+++.. +... ....+.. ...+ ..++++
T Consensus 146 ~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~---~~~~~~~-~~~P-~gi~vd 220 (306)
T 2p4o_A 146 VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPG---EPEIFVE-QTNI-DDFAFD 220 (306)
T ss_dssp TTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBC---CCEEEEE-SCCC-SSEEEB
T ss_pred CCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCC---ccEEEec-cCCC-CCeEEC
Confidence 65421 11 00011123455644444 455556678999999875 3210 1111111 1233 789999
Q ss_pred CCCCeEEeecCCCcEEEeecc
Q 018591 224 DDGKWVYGGGSDGFVMGWEGN 244 (353)
Q Consensus 224 ~~~~~l~~~~~dg~i~i~d~~ 244 (353)
++|++.++....+.|.+++..
T Consensus 221 ~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 221 VEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTCCEEEECBTTCCEEEECTT
T ss_pred CCCCEEEEeCCCCeEEEECCC
Confidence 999887777778899999975
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.97 E-value=0.0002 Score=63.94 Aligned_cols=200 Identities=12% Similarity=0.024 Sum_probs=109.2
Q ss_pred ceEEEEEeC--CeEEEe-cCCCcEEEEEcCC----ceeeeeccccCcceEEEEE--eCC-eEEEEcCCCcEEEEeCCCCC
Q 018591 130 SISCLTVYN--GLIYSG-SWDKTLKVWRVAD----LKCLESIKAHDDAVNGLVA--SKG-IVYSASADGKIKAWGKELGK 199 (353)
Q Consensus 130 ~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~i~~--~~~-~l~~~~~dg~i~iwd~~~~~ 199 (353)
.+..++|++ +.|+.+ ...+.|+.+++.. ......+.........|++ ..+ ++++-...+.|.++++....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 455677876 555554 4557899998864 2222222111223445665 233 55555667889999987654
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEeecC--CCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEe
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS--DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSG 276 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~ 276 (353)
...........+ ..++++|.+.+|+.... .+.|..+++...... .+. ........-+++.++ ++++++-
T Consensus 487 -----~~~l~~~~~~~P-~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~-~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 487 -----RKTLFREQGSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV-TENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp -----EEEECCCSSCCC-CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EES-CSSCSSCCCEEECTTTCCEEEEE
T ss_pred -----eEEEEeCCCCCc-ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEE-eCCCCCccEEEEeccCCEEEEEe
Confidence 222222222334 78999996555544432 267888877653211 111 111112223455554 4555666
Q ss_pred cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 277 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
...+.|..+++..... ..+............|++.. +.++++....+.|..++..+++.+.
T Consensus 559 ~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~-----~~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp TTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEET-----TEEEEECSTTTCEEEEETTTEEEEE
T ss_pred cCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEEC-----CEEEEEeCCCCeEEEEEccCCCceE
Confidence 6778999999875332 22322212223344556654 3566666777899999876655433
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.97 E-value=0.0042 Score=49.69 Aligned_cols=198 Identities=10% Similarity=0.012 Sum_probs=115.1
Q ss_pred ceEEEEEeC--CeE-EEecCCCcEEEEEcCCceee-eeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCCCccc
Q 018591 130 SISCLTVYN--GLI-YSGSWDKTLKVWRVADLKCL-ESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELGKSHC 202 (353)
Q Consensus 130 ~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~ 202 (353)
....++|++ +.| .+-...+.|..+++...... ..+...-.....+++. .+ .+++-...+.|.++++....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--- 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---
Confidence 456788886 444 44456678989988655321 1122222345566663 34 55566667889999987543
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeec--CCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCC
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGG--SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSAD 279 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d 279 (353)
...........+ ..+++.|.+..|+... ..+.|...++...... .+. ........-.+++++ +.+.++=...
T Consensus 113 --~~~l~~~~~~~P-~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~-~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 113 --RKVLFWQELDQP-RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-III-NSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp --CEEEECSSCSSE-EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEE-CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred --EEEEEeCCCCCc-cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEE-ECCCCCccEEEEeccCCEEEEEECCC
Confidence 222222333445 8999999765555554 3577888887643211 111 111122233455554 4455555677
Q ss_pred CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
+.|..+|++.... ..+. .+.......+++.. +.++.+-...+.|..++..+++...
T Consensus 188 ~~I~~~d~dG~~~-~~~~--~~~~~~P~glav~~-----~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 188 NFIHKSNLDGTNR-QAVV--KGSLPHPFALTLFE-----DILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp TEEEEEETTSCSC-EEEE--CSCCSCEEEEEEET-----TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CEEEEEcCCCCce-EEEe--cCCCCCceEEEEeC-----CEEEEEecCCCeEEEEECCCCCceE
Confidence 8999999875332 2222 22334567777754 4666666677889999987776543
No 297
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.94 E-value=0.0049 Score=50.25 Aligned_cols=147 Identities=13% Similarity=0.033 Sum_probs=72.4
Q ss_pred CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC------CCcEEEeeccccccceeeeeeccccc-
Q 018591 188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS------DGFVMGWEGNVEIVRWKLACETKAHE- 260 (353)
Q Consensus 188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~- 260 (353)
..+.+||..+.+-.. ...+....... .+++. -++++++.|+. ...+..||+......|..........
T Consensus 168 ~~v~~yd~~~~~W~~---~~~~p~~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~ 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSY---AGESPWYGTAG-AAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG 242 (357)
T ss_dssp CEEEEEETTTTEEEE---EEECSSCCCBS-CEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred ccEEEEeCCCCcEEE---CCCCCCCCccc-ccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence 478899988765211 11111111110 12222 25566666653 34577787733333444443332221
Q ss_pred -eeEEEEEEcCcEEEEecCC----------------------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591 261 -MAVLCVCLVGEFLCSGSAD----------------------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG 317 (353)
Q Consensus 261 -~~v~~~~~~~~~l~~~~~d----------------------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (353)
....+...++.+++.|+.+ ..+.+||+.+.+ ...+..+......-.++ ..+
T Consensus 243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~--~~~--- 316 (357)
T 2uvk_A 243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYGVSL--PWN--- 316 (357)
T ss_dssp CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEEE--EET---
T ss_pred cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCcccceeE--EeC---
Confidence 1223455678888887732 257889988643 33443333222222222 234
Q ss_pred CCeEEEEccCCC------eEEEEEcCCCCCccccc
Q 018591 318 GGFLLYSGSLDK------SLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 318 ~~~~l~s~~~dg------~i~iw~~~~~~~~~~~~ 346 (353)
+++++.|+.++ .|.++++++++.....+
T Consensus 317 -~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 317 -NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp -TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred -CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 78888888653 46666888887666544
No 298
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.85 E-value=0.0069 Score=48.39 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=77.1
Q ss_pred eCCeEEEecCC--------CcEEEEEcCCceee--eeccccCcceEEEEEeCCeEEEEcC-C-----CcEEEEeCCCCCc
Q 018591 137 YNGLIYSGSWD--------KTLKVWRVADLKCL--ESIKAHDDAVNGLVASKGIVYSASA-D-----GKIKAWGKELGKS 200 (353)
Q Consensus 137 ~~~~l~~~~~d--------g~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~l~~~~~-d-----g~i~iwd~~~~~~ 200 (353)
....++.|+.+ ..+.+||..+.+-. ..+......-.++...+..++.|+. + ..+.+||+.+.+-
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 33556666632 46889998775432 2222222222223334556666665 2 4688999887652
Q ss_pred ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-----cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEE
Q 018591 201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-----FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCS 275 (353)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 275 (353)
... ..+...... .+++. -+++.++.|+.++ .+.+||+.+. .+..............++..++++++.
T Consensus 178 ~~~---~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~l~v~ 249 (315)
T 4asc_A 178 KEL---APMQTARSL--FGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSLVGTLYAI 249 (315)
T ss_dssp EEC---CCCSSCCBS--CEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred EEC---CCCCCchhc--eEEEE-ECCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEECCEEEEE
Confidence 111 111111111 12222 2567777776654 4788888776 344443333333333445567888888
Q ss_pred ecCCC--------------eEEEEecCCC
Q 018591 276 GSADK--------------SIGIWKREAF 290 (353)
Q Consensus 276 ~~~dg--------------~i~iw~~~~~ 290 (353)
|+.++ .+.+||+.+.
T Consensus 250 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 250 GGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CCccccCcCCccccccccCcEEEecCCCC
Confidence 87642 4678888764
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.85 E-value=0.00033 Score=62.62 Aligned_cols=221 Identities=11% Similarity=0.057 Sum_probs=115.4
Q ss_pred CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEe-cCCCcEEEEEcccCccceeEEeeccccccceeeeecccc
Q 018591 35 GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTA-HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQS 111 (353)
Q Consensus 35 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (353)
.+.|+..++.+.+....+.. ...+.+++|+ ++.|+.+ ...+.|+.++++....... ....+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-~~~~i-------------- 448 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVI-------------- 448 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC-CCCBC--------------
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc-eEEEE--------------
Confidence 35788888876655444333 2345677777 4555544 4557888888765210000 00000
Q ss_pred eeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEEEc-
Q 018591 112 NYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYSAS- 185 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~~~- 185 (353)
.........|++.+ + ++++-...+.|.++++........+.........|++. .+.|+.+.
T Consensus 449 -------------~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~ 515 (699)
T 1n7d_A 449 -------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW 515 (699)
T ss_dssp -------------CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred -------------eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc
Confidence 00011223455553 3 44444567889999986544333333223445677773 34444433
Q ss_pred CC-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE-EeecCCCcEEEeeccccccceeeeeeccccceeE
Q 018591 186 AD-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV 263 (353)
Q Consensus 186 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 263 (353)
.. +.|..+++.... ...........+ ..|+++|++..| ++-...+.|..+++...... .+. .........
T Consensus 516 ~~~~~I~~~~~dG~~-----~~~l~~~~l~~P-nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~-~~~~~~~~P 587 (699)
T 1n7d_A 516 GTPAKIKKGGLNGVD-----IYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TIL-EDEKRLAHP 587 (699)
T ss_dssp SSSCCEEBCCSSSCC-----CCEESCSSCSSC-CCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EEC-CCSSSCSSC
T ss_pred CCCCeEEEEeCCCCC-----eeEEEeCCCCCc-cEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEE-ecCCcCCCc
Confidence 22 678887776443 111112222334 889999875544 55556778999998653211 111 111111122
Q ss_pred EEEEEc-CcEEEEecCCCeEEEEecCCCcc
Q 018591 264 LCVCLV-GEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 264 ~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
..++++ +.++++....+.|..++..+++.
T Consensus 588 ~glavd~~~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 588 FSLAVFEDKVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CCCEEETTEEEEECSTTTCEEEEETTTEEE
T ss_pred eEeEEECCEEEEEeCCCCeEEEEEccCCCc
Confidence 233344 45555666778999999877663
No 300
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.84 E-value=0.0084 Score=50.27 Aligned_cols=196 Identities=8% Similarity=-0.066 Sum_probs=109.7
Q ss_pred ceEEEEEeC----CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCC-----cEEEEeCCCCC
Q 018591 130 SISCLTVYN----GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADG-----KIKAWGKELGK 199 (353)
Q Consensus 130 ~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg-----~i~iwd~~~~~ 199 (353)
....+++++ +.|+.+...+.|+.+|..+++...... .......+++ .++.|+.+...+ .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 345788885 567776665889999987776654443 3456788888 333355444321 23333332221
Q ss_pred cccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEEEec
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLCSGS 277 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~ 277 (353)
. ....+. ....+ ..++++| ++.+.++-..++.|+.++..++................-.+++++++ ++++-.
T Consensus 219 -~---~~~~~~-~~~~P-~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 219 -T---ERLSLC-NARGA-KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp -C---CEEEEE-ECSSB-CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred -e---cccccc-ccCCC-CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 0 001111 22333 7789999 67766676678889999987553211111111111112356666777 555556
Q ss_pred CCCeEEEEecCC--Ccc--eEEec-cc--cC---------CCcCeEEEEe---------ecCCCCCCeEEEEccCCCeEE
Q 018591 278 ADKSIGIWKREA--FGK--LCRVG-AI--TG---------HEGPVKCLQA---------SPNAVGGGFLLYSGSLDKSLR 332 (353)
Q Consensus 278 ~dg~i~iw~~~~--~~~--~~~~~-~~--~~---------h~~~v~~~~~---------~~~~~~~~~~l~s~~~dg~i~ 332 (353)
..+.|+.++.+. +.. ...+. .. .+ .-.....+++ .++ +.++++-...+.|+
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~----g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE----YDFYFCDRDSHTVR 368 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC----EEEEEEETTTTEEE
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC----CcEEEEECCCCEEE
Confidence 678999988653 210 00111 00 00 1123677888 555 77777777788888
Q ss_pred EEEc
Q 018591 333 VWWV 336 (353)
Q Consensus 333 iw~~ 336 (353)
.++.
T Consensus 369 ~~~~ 372 (433)
T 4hw6_A 369 VLTP 372 (433)
T ss_dssp EECT
T ss_pred EECC
Confidence 8874
No 301
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.84 E-value=0.0071 Score=48.30 Aligned_cols=175 Identities=10% Similarity=0.039 Sum_probs=90.3
Q ss_pred EEEEEcCCceeee--eccccCcceEEEEEeCCeEEEEcCC--------CcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591 150 LKVWRVADLKCLE--SIKAHDDAVNGLVASKGIVYSASAD--------GKIKAWGKELGKSHCHSLKGILEGHKDVSLNS 219 (353)
Q Consensus 150 v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (353)
+..||..+.+-.. .+......-....+.+..++.|+.+ ..+.+||..+.+-.. ...+...... .+
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r~~--~~ 143 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE---SDPLPYVVYG--HT 143 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE---CCCCSSCCBS--CE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE---CCCCCCcccc--ee
Confidence 7788887755322 2211111112222244455666632 458889988765211 1111111111 12
Q ss_pred EEEcCCCCeEEeecC-C-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCC-----eEEEEecC
Q 018591 220 VVVSDDGKWVYGGGS-D-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADK-----SIGIWKRE 288 (353)
Q Consensus 220 ~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iw~~~ 288 (353)
++. -+++.++.|+. + ..+.+||..+. .+..............+...++++++.|+.++ .+.+||+.
T Consensus 144 ~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 144 VLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp EEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETT
T ss_pred EEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECC
Confidence 222 35566777765 2 46888998876 33333333333333344555788888887654 58889987
Q ss_pred CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC--------------eEEEEEcCCC
Q 018591 289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK--------------SLRVWWVSKQ 339 (353)
Q Consensus 289 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg--------------~i~iw~~~~~ 339 (353)
+. ....+..+.........+.+ + +++++.|+.++ .+.+||+++.
T Consensus 221 ~~-~W~~~~~~p~~r~~~~~~~~--~----~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 221 DN-KWAPFEAFPQERSSLSLVSL--V----GTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp TT-EEEEECCCSSCCBSCEEEEE--T----TEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CC-eEEECCCCCCcccceeEEEE--C----CEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 74 33344333222222222222 3 67888887642 3677887765
No 302
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.83 E-value=0.0056 Score=46.90 Aligned_cols=200 Identities=11% Similarity=0.084 Sum_probs=118.5
Q ss_pred eeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccC-ceeeEEEEEe--CCEEEEecCCCcEEEEEcc
Q 018591 11 VLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHG-DGSVKAVVTV--GNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~ 84 (353)
.+.|-.+.+..++++ +.++++...++.|...|.. ++.++.+... ....-.|++. +.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 355666789999996 4466667788999999987 8888776421 2456677776 4444554466788888887
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC---ce
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD---LK 159 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~---~~ 159 (353)
.... ...+...... . ...........+++++ +.|+++.......+|.+.. ..
T Consensus 100 ~~~~--i~~~~~~~~~--------------------~-~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 100 PNSE--VKILKKIKIP--------------------L-QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN 156 (255)
T ss_dssp TTCC--EEEEEEEECC--------------------C-SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred CCCe--eeeeeeeccc--------------------c-ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC
Confidence 6542 1111111000 0 0002455678999998 5777776665556665531 11
Q ss_pred eeeec-------cccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeecc---------CCceeeEE
Q 018591 160 CLESI-------KAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGH---------KDVSLNSV 220 (353)
Q Consensus 160 ~~~~~-------~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~v~~~ 220 (353)
.+..+ ..+...+.++++++. +++....+..|..+|..... ...+.-. ...+ ..+
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~------~~~~~L~~g~~~l~~~~~qp-EGi 229 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV------IGEMSLTKGSRGLSHNIKQA-EGV 229 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECSTTGGGCSSCCCSE-EEE
T ss_pred ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE------EEEEEcCCccCCcccccCCC-Cee
Confidence 11111 112345678888443 66677777889999976542 2222111 1234 889
Q ss_pred EEcCCCCeEEeecCCCcEEEee
Q 018591 221 VVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 221 ~~~~~~~~l~~~~~dg~i~i~d 242 (353)
+|.++|+..++ ++-+.++.|.
T Consensus 230 a~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 230 AMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EECTTCCEEEE-ETTTEEEEEE
T ss_pred EECCCCCEEEE-cCCceEEEEE
Confidence 99999985555 5556555554
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.72 E-value=0.011 Score=46.89 Aligned_cols=147 Identities=8% Similarity=0.034 Sum_probs=84.9
Q ss_pred CCcEEEEEcC---Cceeeeecc--c-----------cCcceEEEEE--eCCeEEEEcCC-CcEEEEeCCCCCccccccee
Q 018591 147 DKTLKVWRVA---DLKCLESIK--A-----------HDDAVNGLVA--SKGIVYSASAD-GKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 147 dg~v~iwd~~---~~~~~~~~~--~-----------~~~~v~~i~~--~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~ 207 (353)
+..|..+|+. +++.+.... . -......++. .++..++++.. +.|...+........... .
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~-~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW-E 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE-C
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee-c
Confidence 6789999998 776654432 1 1124778888 34466767777 777777766443110000 0
Q ss_pred eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeee-------eccccceeEEEEEEcCcE-EEEecCC
Q 018591 208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLAC-------ETKAHEMAVLCVCLVGEF-LCSGSAD 279 (353)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-l~~~~~d 279 (353)
........-.+.++++|+++.|++....|.+..+|+.... ...... .+. ....+.....+|+. +++...+
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv-~~~v~~~~~G~~~~~~-~~dgilp~~~~G~vllV~~~~~ 255 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY-AWPEPVKINGDFGTLS-GTEKIVTVPVGNESVLVGARAP 255 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS-CCCEECEESSCCCCCT-TEEEEEEEEETTEEEEEEEETT
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc-ceeecccccCCccccc-CcccccccccCCEEEEEEcCCC
Confidence 0001111113789999999988888779999999988431 101111 111 12223444557887 5555567
Q ss_pred CeEEEEecCCCcceEEe
Q 018591 280 KSIGIWKREAFGKLCRV 296 (353)
Q Consensus 280 g~i~iw~~~~~~~~~~~ 296 (353)
+.+.+.+.+..+....+
T Consensus 256 ~~~~l~S~DgW~sa~~~ 272 (334)
T 2p9w_A 256 YAISFRSWDNWKSANIK 272 (334)
T ss_dssp EEEEEECSSTTSEEEEE
T ss_pred CEEEEECCCCcceeEEe
Confidence 77777776665543333
No 304
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.71 E-value=0.012 Score=47.23 Aligned_cols=195 Identities=10% Similarity=0.046 Sum_probs=97.4
Q ss_pred CCceEEEEEeCCeEEEecCCCcEEEEEcCCce---eeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccc
Q 018591 128 ADSISCLTVYNGLIYSGSWDKTLKVWRVADLK---CLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 128 ~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
...+.++.+.++.+++++.++.|..- .+.++ .+.....+...+..+.+ .++.++.++.+|.|..- ...++ .
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~-t-- 153 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGK-N-- 153 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTS-S--
T ss_pred CccEEEEEecCCeEEEEECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCC-C--
Confidence 34677888887555555666755442 22232 22221123345677776 56655555566654321 12222 0
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCe
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKS 281 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 281 (353)
-.......... +..+++.|++.+++.+...+..+-.|-. + ..+..... .....+..+.+ ++..+ .++.+|.
T Consensus 154 -W~~~~~~~~~~-~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G-~tW~~~~~--~~~~~~~~~~~~~~g~~~-~~~~~G~ 226 (327)
T 2xbg_A 154 -WQALVQEAIGV-MRNLNRSPSGEYVAVSSRGSFYSTWEPG-Q-TAWEPHNR--TTSRRLHNMGFTPDGRLW-MIVNGGK 226 (327)
T ss_dssp -EEEEECSCCCC-EEEEEECTTSCEEEEETTSSEEEEECTT-C-SSCEEEEC--CSSSCEEEEEECTTSCEE-EEETTTE
T ss_pred -CEEeecCCCcc-eEEEEEcCCCcEEEEECCCcEEEEeCCC-C-CceeECCC--CCCCccceeEECCCCCEE-EEeCCce
Confidence 11111222233 4889999998888776544433333321 1 12222211 22334445544 35544 5556788
Q ss_pred EEEEecCCCcceEEeccc-cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 282 IGIWKREAFGKLCRVGAI-TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+++.+.+.++....+... ..+...+.++.+.++ +.+++.+. +|.| ++....++
T Consensus 227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~----~~~~~~g~-~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP----NEVWLAGG-AGAL-LCSQDGGQ 280 (327)
T ss_dssp EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS----SCEEEEES-TTCE-EEESSTTS
T ss_pred EEEecCCCCCeeEeccCCcccCCcceEEEEecCC----CEEEEEeC-CCeE-EEeCCCCc
Confidence 877643333332222211 112345889999887 77777665 6666 34444443
No 305
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.0027 Score=50.81 Aligned_cols=194 Identities=9% Similarity=0.077 Sum_probs=103.6
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccC-ceeeEEEEEe----CCEEEEe--cCCCcEEEEEcccCccceeEEeeccc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHG-DGSVKAVVTV----GNKVFTA--HQDSRIRVWKVSRSSENVFRLVDTLP 98 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~----~~~l~s~--~~dg~i~~w~~~~~~~~~~~~~~~~~ 98 (353)
+.+++.++.||.|.-.|.++|+....++.. ..++....-. +..++.+ +.||.|..++.+++.......+..+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l- 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL- 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH-
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc-
Confidence 568999999999999999999999998764 1222221111 2234433 6899999999876632111110000
Q ss_pred cccceeeeecccceeEeecccceeeeeecCCceEE---EEE-------eCCeEEEecCCCcEEEEEcCCceeeeeccccC
Q 018591 99 TTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC---LTV-------YNGLIYSGSWDKTLKVWRVADLKCLESIKAHD 168 (353)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~-------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 168 (353)
-...++.. ... ..+.+++|+.+|.+...|+.+|+.+.++....
T Consensus 89 ---------------------------v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~ 141 (339)
T 2be1_A 89 ---------------------------VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGS 141 (339)
T ss_dssp ---------------------------HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTC
T ss_pred ---------------------------eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCC
Confidence 01111111 001 23678999999999999999999998885321
Q ss_pred --cc-----eEEEE-------EeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc--eeeEEEEcCCCCeEEee
Q 018591 169 --DA-----VNGLV-------ASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV--SLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 169 --~~-----v~~i~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~ 232 (353)
.. ..|.. ..++.++.+..+..+.+.+ ++++ ............... .......+.++.+ +.+
T Consensus 142 ~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~ 218 (339)
T 2be1_A 142 KNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAP 218 (339)
T ss_dssp BCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEE
T ss_pred CcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEE
Confidence 10 01111 1234666666666666666 3332 111111111111000 0000011223555 446
Q ss_pred cCCCcEEEeeccccccce
Q 018591 233 GSDGFVMGWEGNVEIVRW 250 (353)
Q Consensus 233 ~~dg~i~i~d~~~~~~~~ 250 (353)
+.||.|.-+|..++...|
T Consensus 219 ~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 219 FRDKSLLASDLDFRIARW 236 (339)
T ss_dssp ETTTEEEEECSTTCCEEE
T ss_pred CCCCEEEEEECCCCcEEE
Confidence 777888888777765444
No 306
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.65 E-value=0.015 Score=46.58 Aligned_cols=189 Identities=13% Similarity=0.272 Sum_probs=109.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe------CC---EEEEe-cC--CCcEEEEEcccCccceeEE
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV------GN---KVFTA-HQ--DSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~------~~---~l~s~-~~--dg~i~~w~~~~~~~~~~~~ 93 (353)
..+++.....+-+.+||+ +|+.++.+.. +.++.+... +. ++++. -. +++|.+|+++..... ...
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 346666677889999999 8999988864 334444332 22 22333 33 578999988532211 112
Q ss_pred eecc--ccccceeeeecccceeEeecccceeeeeecCCceEEEEE--eC--C--eEEEecCCCcEEEEEcC-------Cc
Q 018591 94 VDTL--PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV--YN--G--LIYSGSWDKTLKVWRVA-------DL 158 (353)
Q Consensus 94 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~--~l~~~~~dg~v~iwd~~-------~~ 158 (353)
+... +.. .....+..+++ ++ + ++++...+|.+..|++. +.
T Consensus 116 i~~~~~pv~-------------------------t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~ 170 (355)
T 3amr_A 116 MTDPDHPIA-------------------------TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG 170 (355)
T ss_dssp CSCTTSCEE-------------------------CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE
T ss_pred ccccccCcC-------------------------CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc
Confidence 1111 100 00133444555 44 2 58888889999999882 34
Q ss_pred eeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEE--cCCCC-eEEee
Q 018591 159 KCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVV--SDDGK-WVYGG 232 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~~-~l~~~ 232 (353)
+.++++.. .+.+..+... .+.|+.+-.+..|..++.+.............. ++-..-+..|++ .++++ +|+++
T Consensus 171 ~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS 249 (355)
T 3amr_A 171 KKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS 249 (355)
T ss_dssp EEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred eEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence 66777754 4567777774 458999998877766665422111111222221 222222377777 45555 55555
Q ss_pred c-CCCcEEEeecc
Q 018591 233 G-SDGFVMGWEGN 244 (353)
Q Consensus 233 ~-~dg~i~i~d~~ 244 (353)
+ .+....+||..
T Consensus 250 sQG~~s~~Vydr~ 262 (355)
T 3amr_A 250 SQGNSSYAIYDRQ 262 (355)
T ss_dssp EGGGTEEEEEESS
T ss_pred cCCCCEEEEEECC
Confidence 5 67799999986
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.63 E-value=0.009 Score=47.33 Aligned_cols=162 Identities=10% Similarity=0.131 Sum_probs=97.3
Q ss_pred CcceEEEEEeC--CeEEEEc-CCCcEEEEeCCCCCccccccee-eee-----ccCCceeeEEEE---cCCCCeEEeec--
Q 018591 168 DDAVNGLVASK--GIVYSAS-ADGKIKAWGKELGKSHCHSLKG-ILE-----GHKDVSLNSVVV---SDDGKWVYGGG-- 233 (353)
Q Consensus 168 ~~~v~~i~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-~~~-----~~~~~~v~~~~~---~~~~~~l~~~~-- 233 (353)
.....++.|.+ +.++.++ ..++|..||...+. ... .+. +.....+..+.+ .|+++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-----~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-----HFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC-----EEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-----EEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 33445778843 5555555 78999999987554 111 122 111223478999 68877777543
Q ss_pred -----------CCCcEEEeecc---ccccceeeeee--ccc-------cceeEEEEEE--cCcEEEEecCC-CeEEEEec
Q 018591 234 -----------SDGFVMGWEGN---VEIVRWKLACE--TKA-------HEMAVLCVCL--VGEFLCSGSAD-KSIGIWKR 287 (353)
Q Consensus 234 -----------~dg~i~i~d~~---~~~~~~~~~~~--~~~-------~~~~v~~~~~--~~~~l~~~~~d-g~i~iw~~ 287 (353)
.+..+..||+. +++..+..... ..+ .......+.. +|+..++++.. +.|...+.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 25779999998 55433322211 001 1123445555 48888888877 88777776
Q ss_pred CCCcceEEec-cc--cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 288 EAFGKLCRVG-AI--TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 288 ~~~~~~~~~~-~~--~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
.... ..... .. .......+.|++.|+ +..|++...+|.+..+|+.+.
T Consensus 167 dG~~-~~~~~~~~~~~~~~~G~nGIv~~pd----g~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 167 DGKT-VSTFAWESGNGGQRPGYSGITFDPH----SNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp TSCC-EEEEEECCCCSSSCCSCSEEEEETT----TTEEEEESSSSSEEEEECSSS
T ss_pred CCCE-EeeeeecCCCcccccCcceEEEeCC----CCEEEEEcCCCeEEEEcCCCC
Confidence 5432 11111 11 111224679999999 877777766999999998853
No 308
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.61 E-value=0.012 Score=53.34 Aligned_cols=192 Identities=12% Similarity=0.063 Sum_probs=100.6
Q ss_pred ceEEEEEe-C--CeEEEec-CCC----cEEEEEcCCc-eeeee-ccccCcceEEEEEe-CC-eEEEEcCC-----CcEEE
Q 018591 130 SISCLTVY-N--GLIYSGS-WDK----TLKVWRVADL-KCLES-IKAHDDAVNGLVAS-KG-IVYSASAD-----GKIKA 192 (353)
Q Consensus 130 ~i~~~~~~-~--~~l~~~~-~dg----~v~iwd~~~~-~~~~~-~~~~~~~v~~i~~~-~~-~l~~~~~d-----g~i~i 192 (353)
.+....|+ | ++|+.+. .+| .|+++|+.++ +.+.. +. .....+.|+ ++ .|+....+ ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67788999 8 5555432 222 5999999988 63221 11 123467783 33 55555544 25788
Q ss_pred EeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec---CCCcEEEeeccccccceeeeeeccccceeEEEEE-E
Q 018591 193 WGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG---SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC-L 268 (353)
Q Consensus 193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~-~ 268 (353)
+++.++... ....+..........+.|+|||++|+... ....|.++|+.++..................... .
T Consensus 252 ~~lgt~~~~---~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 252 HVMGKLQSE---DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH 328 (751)
T ss_dssp EETTSCGGG---CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred EECCCCchh---cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence 888765411 11222222222236789999999887654 2346788888765211100111122223334444 2
Q ss_pred cCcEEE-EecCC----CeEEEEecCCCcceEEecc-ccCCCc--CeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 269 VGEFLC-SGSAD----KSIGIWKREAFGKLCRVGA-ITGHEG--PVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 269 ~~~~l~-~~~~d----g~i~iw~~~~~~~~~~~~~-~~~h~~--~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
.++.|+ ....+ ..|..+++.+.... .. +..|.. .+..+.+.. +.++++...||..++|-
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~---~~~li~~~~~~~l~~~~~~~-----~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDW---SHVLVDHSEDVFMESIAVRS-----NYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTCC---CCEEECCCSSEEEEEEEECS-----SEEEEEEEETTEEEEEE
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCcccc---eeeEECCCCCcEEEEEEEEC-----CEEEEEEEeCCEEEEEE
Confidence 355444 43333 36777777643211 12 222333 345555542 56777778888655543
No 309
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.58 E-value=0.019 Score=45.87 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=88.9
Q ss_pred EEEEEcCCceeee--eccccCcceEEEEEeCCeEEEEcCC-------CcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591 150 LKVWRVADLKCLE--SIKAHDDAVNGLVASKGIVYSASAD-------GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV 220 (353)
Q Consensus 150 v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (353)
+..||..+.+-.. .+......-......+..++.|+.+ ..+.+||..+.+-... ..+...... .++
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~--~~~ 154 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV---KNLPIKVYG--HNV 154 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE---CCCSSCEES--CEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC---CCCCCcccc--cEE
Confidence 7788887654322 2221111222223344466666653 2477888877652111 111111111 122
Q ss_pred EEcCCCCeEEeecC------CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEEEEecCC
Q 018591 221 VVSDDGKWVYGGGS------DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIGIWKREA 289 (353)
Q Consensus 221 ~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iw~~~~ 289 (353)
+. .++++++.|+. -..+.+||..+.. +..............+...++.+++.|+.+ ..+.+||+.+
T Consensus 155 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 155 IS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp EE-ETTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred EE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCC
Confidence 22 45666677664 2358899988763 333333332222233445578888887653 3577899877
Q ss_pred CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC--------------CeEEEEEcCCC
Q 018591 290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD--------------KSLRVWWVSKQ 339 (353)
Q Consensus 290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d--------------g~i~iw~~~~~ 339 (353)
.+ ...+..+.........+. .+ +++++.|+.+ ..+.+||+++.
T Consensus 232 ~~-W~~~~~~p~~r~~~~~~~--~~----~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 232 NK-WEVMTEFPQERSSISLVS--LA----GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp CC-EEECCCCSSCCBSCEEEE--ET----TEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred Ce-EEECCCCCCcccceEEEE--EC----CEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 43 334433332222222222 23 6788888754 35777887764
No 310
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.56 E-value=0.045 Score=49.70 Aligned_cols=269 Identities=10% Similarity=0.167 Sum_probs=146.9
Q ss_pred cCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeE
Q 018591 16 VGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFR 92 (353)
Q Consensus 16 ~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~ 92 (353)
...|++|.-+ ..+|..|..+| +..||-...+..... ......|.++..+ ...|..++.+| +..||..+..
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~----- 93 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADR----- 93 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTE-----
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCE-----
Confidence 4679999987 55777788877 566774332211100 1123468888776 66788887765 6788876643
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeecc----ccC
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIK----AHD 168 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~ 168 (353)
... +.. .....|.++....+.|..++.+ -+..+|..+++...... ...
T Consensus 94 f~~--~~~-------------------------~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~ 145 (758)
T 3ott_A 94 YEQ--PET-------------------------DFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPN 145 (758)
T ss_dssp ECC--CSC-------------------------CCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSC
T ss_pred EEC--ccc-------------------------CCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCC
Confidence 100 000 1122466665555677777766 58888876654332200 123
Q ss_pred cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591 169 DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI 247 (353)
Q Consensus 169 ~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 247 (353)
..|.++.. .++.+..++.+ .|..+|..+.+....... .........|.++...+++..|..|+. +-+..+|..++.
T Consensus 146 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~-~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLP-VHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCC-CCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCC-CccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 46788877 46677777654 577888766541100000 000011223577888777766666664 348888877652
Q ss_pred cceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccc-----cCCCcCeEEEEeecCCCCCCeE
Q 018591 248 VRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAI-----TGHEGPVKCLQASPNAVGGGFL 321 (353)
Q Consensus 248 ~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~ 321 (353)
.. .... .....+.++..+ ...|..|+.+ -+.+++..+.+. ..+... .-....|.++....+ |.+
T Consensus 223 ~~--~~~~--l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~----g~l 292 (758)
T 3ott_A 223 IK--QTEA--FHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQE----HNI 292 (758)
T ss_dssp EE--EEEE--EEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTT----CCE
T ss_pred EE--eccC--CCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCC----CCE
Confidence 11 1111 123457777776 3455556654 478888766432 122110 012345888887766 554
Q ss_pred EEEccCCCeEEEE
Q 018591 322 LYSGSLDKSLRVW 334 (353)
Q Consensus 322 l~s~~~dg~i~iw 334 (353)
-+ |+..| +.+.
T Consensus 293 Wi-GT~~G-l~~~ 303 (758)
T 3ott_A 293 WL-GTDYG-ISLS 303 (758)
T ss_dssp EE-EESSS-EEEE
T ss_pred EE-EeCCc-cccc
Confidence 33 33446 4433
No 311
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=0.01 Score=49.77 Aligned_cols=154 Identities=6% Similarity=-0.112 Sum_probs=90.3
Q ss_pred ceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC----cEEEe
Q 018591 170 AVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG----FVMGW 241 (353)
Q Consensus 170 ~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~i~ 241 (353)
....+++++ +.|+.+...+.|+.+|+.... ... +......+ ..+++++++++|+++.. ++ .+..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-----v~~-~~~~~~~P-~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-----VST-VYSGLSKV-RTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-----EEE-EECCCSCE-EEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-----EEE-EecCCCCc-ceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 446777753 466666655889999988765 222 22233445 89999999996655543 22 23334
Q ss_pred eccccccceeeeeeccccceeEEEEEE-cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591 242 EGNVEIVRWKLACETKAHEMAVLCVCL-VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF 320 (353)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 320 (353)
+............. .....-.++.+ ++.++++-..++.|+.++...+... .+..... ......++|+|+ ++
T Consensus 211 ~~~g~~~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~~~~-~~~P~gia~~pd----G~ 282 (430)
T 3tc9_A 211 TRESGFKVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQD-SGWEFHIQFHPS----GN 282 (430)
T ss_dssp EGGGTSCSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEEECSS-SSCCEEEEECTT----SS
T ss_pred eCCCceeeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEEcCC-CCcceeEEEcCC----CC
Confidence 43222110011111 11122344566 4677777777889999998865421 2222221 245788999999 88
Q ss_pred -EEEEccCCCeEEEEEcCC
Q 018591 321 -LLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 321 -~l~s~~~dg~i~iw~~~~ 338 (353)
++++-...+.|..++...
T Consensus 283 ~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 283 YAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEEETTTTEEEEEEEET
T ss_pred EEEEEECCCCEEEEEeCCc
Confidence 555556678899987653
No 312
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.42 E-value=0.031 Score=44.59 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=74.2
Q ss_pred eCCeEEEecCC-------CcEEEEEcCCceeee--eccccCcceEEEEEeCCeEEEEcC------CCcEEEEeCCCCCcc
Q 018591 137 YNGLIYSGSWD-------KTLKVWRVADLKCLE--SIKAHDDAVNGLVASKGIVYSASA------DGKIKAWGKELGKSH 201 (353)
Q Consensus 137 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~l~~~~~------dg~i~iwd~~~~~~~ 201 (353)
....++.|+.+ ..+.+||..+.+-.. .+......-.++...+..++.|+. -..+.+||+.+.+-.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 33556666643 357888887654322 222111111222234445556653 235889998876521
Q ss_pred cccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEe
Q 018591 202 CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG 276 (353)
Q Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 276 (353)
.. ..+...... .+++. -+++.++.|+.+ ..+.+||+.+. .+...............+..++.+++.|
T Consensus 189 ~~---~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (318)
T 2woz_A 189 DL---APMKTPRSM--FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN--KWEVMTEFPQERSSISLVSLAGSLYAIG 260 (318)
T ss_dssp EE---CCCSSCCBS--CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC--CEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred EC---CCCCCCccc--ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC--eEEECCCCCCcccceEEEEECCEEEEEC
Confidence 11 111111111 12222 256677777643 34678888775 3444333333333334455677888877
Q ss_pred cCC--------------CeEEEEecCCC
Q 018591 277 SAD--------------KSIGIWKREAF 290 (353)
Q Consensus 277 ~~d--------------g~i~iw~~~~~ 290 (353)
+.+ ..+.+||+.+.
T Consensus 261 G~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 261 GFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp CBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CeeccCCCCceeccceeeeEEEEeCCCC
Confidence 754 35778888764
No 313
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.056 Score=45.76 Aligned_cols=210 Identities=10% Similarity=0.077 Sum_probs=109.8
Q ss_pred ceEEEEE-------eC--CeEEEecCCC-------cEEEEEcCC-ceee-----eeccccCcceEEEEEeC--C-eEEEE
Q 018591 130 SISCLTV-------YN--GLIYSGSWDK-------TLKVWRVAD-LKCL-----ESIKAHDDAVNGLVASK--G-IVYSA 184 (353)
Q Consensus 130 ~i~~~~~-------~~--~~l~~~~~dg-------~v~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~--~-~l~~~ 184 (353)
....++| ++ +.|+++...+ .|.+++... +... ..+.. -.....++.++ + ++++-
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNS 265 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEE
Confidence 5778888 76 5466555443 266665333 1221 12211 12234566633 3 55566
Q ss_pred cCCCcEEEEeCC-------CCCc-cc---cc---ceeeeec-cCCceeeEEEEcCCCCeE-EeecCCCcEEEeecccccc
Q 018591 185 SADGKIKAWGKE-------LGKS-HC---HS---LKGILEG-HKDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIV 248 (353)
Q Consensus 185 ~~dg~i~iwd~~-------~~~~-~~---~~---~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~ 248 (353)
..++.|..+|+. ++.. .+ .. ....+.. ....+ ..++|+|+++.| ++-.....|+.++......
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p-~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWE-FQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK 344 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCC-EEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCc-eEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence 677889999987 4441 00 00 0011222 22334 789999999954 4445677888866543211
Q ss_pred ce----eeeee--ccc------------cceeEEEEE-------EcCcEEEEecCCCeEEEEecCCCcceEEeccc----
Q 018591 249 RW----KLACE--TKA------------HEMAVLCVC-------LVGEFLCSGSADKSIGIWKREAFGKLCRVGAI---- 299 (353)
Q Consensus 249 ~~----~~~~~--~~~------------~~~~v~~~~-------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---- 299 (353)
.. .+... ..+ ++....++. .++.++++=..++.|+.++. ++. ...+.--
T Consensus 345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~ 422 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGAST 422 (496)
T ss_dssp EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTH
T ss_pred eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccc
Confidence 10 11111 000 111133343 34567777777889999984 332 2122100
Q ss_pred -------cC----------CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 300 -------TG----------HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 300 -------~~----------h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
.+ .-.....|+++++ ++.++++=..+..|+.++++...+.....
T Consensus 423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~---~g~lyVaD~~N~rIrki~~~~~~~~~~~~ 483 (496)
T 3kya_A 423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDV---KEMFYVHDQVGHTIRTISMEQEENVAGDE 483 (496)
T ss_dssp HHHHSCSCCCCCEETTTTCCCSSEEEEEEETT---TTEEEEEETTTTEEEEEEECCCC------
T ss_pred cccCccccccCCCCchhhhhcCCCcEEEEECC---CCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence 01 1124678999984 16777777778899999999887776544
No 314
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.34 E-value=0.0098 Score=53.84 Aligned_cols=155 Identities=14% Similarity=0.012 Sum_probs=87.2
Q ss_pred ceEEEEEe-CC--eEE-EEcCCC----cEEEEeCCCC-CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----
Q 018591 170 AVNGLVAS-KG--IVY-SASADG----KIKAWGKELG-KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----- 235 (353)
Q Consensus 170 ~v~~i~~~-~~--~l~-~~~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 235 (353)
.+....|+ ++ .++ +...+| .|+++|+.++ +. +...+.. ....++|+||++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~----l~~~~~~----~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT----IADKVSG----TNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC----CCCCEEE----ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe----CCccccC----ceeeEEEecCCCEEEEEEECCCCCC
Confidence 56777887 55 444 333333 4999999987 51 1111111 12578999999888776654
Q ss_pred CcEEEeeccccccceeeeeeccccc-eeEEEEEEcCcEEEEec---CCCeEEEEecCCCc-ce--EEeccccCCCcCeEE
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCLVGEFLCSGS---ADKSIGIWKREAFG-KL--CRVGAITGHEGPVKC 308 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~---~dg~i~iw~~~~~~-~~--~~~~~~~~h~~~v~~ 308 (353)
..|.++++.++.............. ..-..++++|++|+... ....|+++|+.++. .. ..+ .....+...+
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~~~~~~~~s 324 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV--RPREKGVRYD 324 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--SCCCTTCCEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--ecCCCCceEE
Confidence 2577788776532222222211111 22234566788777554 34578889988752 12 222 2334455666
Q ss_pred EEeecCCCCCCeEEEEccCC----CeEEEEEcCC
Q 018591 309 LQASPNAVGGGFLLYSGSLD----KSLRVWWVSK 338 (353)
Q Consensus 309 ~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~ 338 (353)
+.|... +.+++....+ ..|..+++.+
T Consensus 325 ~~~~~g----~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 325 VQMHGT----SHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEETT----TEEEEEECTTTCTTCEEEEEETTS
T ss_pred EeeeeC----CEEEEEeCCCCCCCcEEEEEcCCC
Confidence 666554 5566655444 3666677664
No 315
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.27 E-value=0.087 Score=46.49 Aligned_cols=197 Identities=8% Similarity=-0.007 Sum_probs=114.5
Q ss_pred CceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCC-eEEEEcCCCcEEEEeCCCCCccc
Q 018591 129 DSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKG-IVYSASADGKIKAWGKELGKSHC 202 (353)
Q Consensus 129 ~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~ 202 (353)
.....++|++ +.++ +-..++.|..+++........+.........+++ ..+ .+++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--- 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--- 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence 3567889987 4444 4456788999988654333333222234566776 333 55666677889999987553
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeec--CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEEEecCC
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGG--SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLCSGSAD 279 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d 279 (353)
...........+ ..+++.|....|+... ..+.|...++...... .+.. ......-.++.++++ +.++=...
T Consensus 114 --~~~l~~~~l~~P-~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~--~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 114 --RQVLVWKDLDSP-RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVP--NVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp --CEEEECSSCCCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEEC--SCSSEEEEEEETTTTEEEEEETTT
T ss_pred --EEEEEeCCCCCc-ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEEC--CCCCcceEEEccccCEEEEEECCC
Confidence 222222333445 8999999655555544 2567777777654211 1111 111222344444444 44555567
Q ss_pred CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
+.|..+|+..... ..+ .........+++.. +.++++-...+.|...|..+++...
T Consensus 188 ~~I~~~d~dG~~~-~v~---~~~l~~P~glav~~-----~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 188 NLIESSNMLGLNR-EVI---ADDLPHPFGLTQYQ-----DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp TEEEEEETTSCSC-EEE---EECCSCEEEEEEET-----TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CEEEEEcCCCCce-EEe---eccCCCceEEEEEC-----CEEEEecCCCCEEEEEECCCCCceE
Confidence 8999999876443 222 22233456777764 4555666667889888877665443
No 316
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.20 E-value=0.12 Score=46.85 Aligned_cols=286 Identities=8% Similarity=0.036 Sum_probs=150.2
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 94 (353)
.|.++..+ +..|..|+. +-+..+|..+++...........|.++..+ ...|..|+.+ -+.+++..+... ...
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~---~~~ 266 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPL---QHI 266 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCC---EEE
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcE---EEE
Confidence 48888875 555666664 458888987765433222224568888877 5566666654 477777655431 111
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCC-ceeeeec----cccC
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVAD-LKCLESI----KAHD 168 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~-~~~~~~~----~~~~ 168 (353)
...+.... .-....|.++.... +.|-.|+..| +.++.... .+..... ....
T Consensus 267 ~~~~~~~~----------------------~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~ 323 (758)
T 3ott_A 267 IHDSRNIQ----------------------SLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDG 323 (758)
T ss_dssp CCCTTCTT----------------------SCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCC
T ss_pred EcCCCCcC----------------------cCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCC
Confidence 10000000 01234588888777 6777787777 54443221 1111100 0123
Q ss_pred cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceee---eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591 169 DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGI---LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244 (353)
Q Consensus 169 ~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 244 (353)
..|.++.. .++.+..|+.+ -+..++..++.......... ...-....|.++.-.+++++ ..|+. +-+..||..
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~-~GL~~~~~~ 400 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIATD-GSINRYDYA 400 (758)
T ss_dssp CBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEET-TEEEEEETT
T ss_pred ceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEeC-CcHhhcCcC
Confidence 46788877 55677777765 46677765432100000000 00111223578887777764 44554 458889987
Q ss_pred ccccceeeeeecc--ccceeEEEEEEc-CcEEEEecCCCeEEEEecCCC-----cceE---EeccccC-CCcCeEEEEee
Q 018591 245 VEIVRWKLACETK--AHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAF-----GKLC---RVGAITG-HEGPVKCLQAS 312 (353)
Q Consensus 245 ~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~-----~~~~---~~~~~~~-h~~~v~~~~~~ 312 (353)
++........... .....+.++..+ ...|..|+..+-|..+|..+. +... ......+ ....|.++...
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 480 (758)
T 3ott_A 401 TRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPD 480 (758)
T ss_dssp TTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEEC
T ss_pred CCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEc
Confidence 7632111100000 022457777776 456777777666888885531 1110 1111111 12358888888
Q ss_pred cCCCCCCeEEE-EccCCCeEEEEEcCCC
Q 018591 313 PNAVGGGFLLY-SGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 313 ~~~~~~~~~l~-s~~~dg~i~iw~~~~~ 339 (353)
++ |.+.+ .++.+| |..++..++
T Consensus 481 ~~----g~lWi~~~t~~G-l~~~d~~~~ 503 (758)
T 3ott_A 481 NE----GNVWVLLYNNKG-IDKINPRTR 503 (758)
T ss_dssp TT----SCEEEEETTCSS-EEEEETTTT
T ss_pred CC----CCEEEEccCCCC-cEEEeCCCC
Confidence 87 77665 355554 777787654
No 317
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.19 E-value=0.023 Score=53.94 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=116.6
Q ss_pred EeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC
Q 018591 136 VYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK 213 (353)
Q Consensus 136 ~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 213 (353)
.+| ..+++--...++.++|+++.+.++.+.- ..+|.-=.| +++.++..+. ..|..|++.... .+...+..|.
T Consensus 73 MnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s----~P~k~fdR~~ 146 (1630)
T 1xi4_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVTD-NAVYHWSMEGES----QPVKMFDRHS 146 (1630)
T ss_pred cCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEcC-CeEEEeccCCCC----ccHHHHhcch
Confidence 344 3333333468899999998887777654 345666666 7776665553 579999997533 1333333331
Q ss_pred ---CceeeEEEEcCCCCeEEeec-------CCCcEEEeeccccccceeeeeeccccceeEEEEEEcC----cEEEE-ec-
Q 018591 214 ---DVSLNSVVVSDDGKWVYGGG-------SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG----EFLCS-GS- 277 (353)
Q Consensus 214 ---~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~-~~- 277 (353)
+..|.....+++.++++..+ -.|.+.+|+.+.+ ....+.+|......+..+| ..|++ +.
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----cchhhhHhHhhhheeccCCCCCCceEEEEEEe
Confidence 23346677788888877433 3588999998775 3334445544433333321 11221 11
Q ss_pred --CCCeEEEEecCCC---cceEE-----e-ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 278 --ADKSIGIWKREAF---GKLCR-----V-GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 278 --~dg~i~iw~~~~~---~~~~~-----~-~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
..+.++|-++... ..... + .....-.+...++..++. ...+..-+.-|.|+++|++++.++...
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k----~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK----HDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc----cCEEEEEecCceEEEEecccchhhhhc
Confidence 1368999988553 11000 0 000112334566777777 667888889999999999999887643
No 318
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0012 Score=52.93 Aligned_cols=143 Identities=12% Similarity=0.049 Sum_probs=81.3
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeecccc-CcceEEEEE----eCCeEEEE--cCCCcEEEEeCCCCCcccccceeeeec
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAH-DDAVNGLVA----SKGIVYSA--SADGKIKAWGKELGKSHCHSLKGILEG 211 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~----~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~ 211 (353)
+.+++++.||.|.-+|..+|+...+++.. ..++....- .++.++.+ +.||.|..+|..++..........+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv- 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV- 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH-
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce-
Confidence 57899999999999999999999888654 122222211 12344444 68999999998877421100000000
Q ss_pred cCCceeeEEEEc-----------CCCCeEEeecCCCcEEEeeccccccceeeeeeccccc---eeEEEEE-------EcC
Q 018591 212 HKDVSLNSVVVS-----------DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE---MAVLCVC-------LVG 270 (353)
Q Consensus 212 ~~~~~v~~~~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~v~~~~-------~~~ 270 (353)
...+ +... ..+..+++|+.+|.+.-.|..+++..+++........ ....|.. ..+
T Consensus 90 -~~SP---~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 90 -STSP---LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp -TTCS---EEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred -eccc---cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 0111 1110 1355788999999999999999976665543211110 0001111 124
Q ss_pred cEEEEecCCCeEEEEe
Q 018591 271 EFLCSGSADKSIGIWK 286 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~ 286 (353)
..++.|..+..+.+.+
T Consensus 166 ~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS 181 (339)
T ss_dssp CEEEEEEEEEECEECC
T ss_pred CeEEEecceEEEEEEC
Confidence 5666666666666666
No 319
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=97.10 E-value=0.066 Score=41.87 Aligned_cols=227 Identities=13% Similarity=0.119 Sum_probs=124.8
Q ss_pred eeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEe
Q 018591 58 SVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY 137 (353)
Q Consensus 58 ~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 137 (353)
.|..++.-..+.+.-. ||.|..|-.....+.- +|. .....|..++..
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg------~p~--------------------------~~~~~i~~ia~G 71 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLT------MPA--------------------------ATQSGVDAIAAG 71 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTS------CCG--------------------------GGGSCCCEEEEC
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCC------CCc--------------------------cCCCCEEEEEeC
Confidence 5777776655544445 8999999866543110 000 112356667766
Q ss_pred CCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCcee
Q 018591 138 NGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSL 217 (353)
Q Consensus 138 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (353)
....+.-. ||.|+.|-....-.+..-..-...|..++......+.-. +|.|..|-.....+ +- . .......|
T Consensus 72 ~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gq----lg-~-~~~~~~~i 143 (282)
T 3qhy_B 72 NYHSLALK-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQ----TT-V-PAEAQSGV 143 (282)
T ss_dssp SSEEEEEE-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTST----TS-C-CGGGGSSE
T ss_pred CCEEEEEE-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCc----CC-C-CccCCCCe
Confidence 63333334 899999986542222111112357888888666555556 99999997654331 10 0 11111223
Q ss_pred eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEec
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG 297 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 297 (353)
..++...+. .+.-. ||.+..|-.........+ ......+..++.-..+.++- .||.|+.|-.....++-.
T Consensus 144 ~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~-- 213 (282)
T 3qhy_B 144 TALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVP----AEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV-- 213 (282)
T ss_dssp EEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCC--
T ss_pred EEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCc----eecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCC--
Confidence 555554432 22223 688888866543111111 11134567777665544444 699999998665442211
Q ss_pred cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 298 ~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
.......|..++.... ...+++ ||.|..|-.....++.
T Consensus 214 -p~~~~~~v~~i~~G~~----h~~al~---~g~v~~wG~n~~gq~~ 251 (282)
T 3qhy_B 214 -PTEALSGVSAIASGEW----YSLALK---NGKVIAWGSSRTAPSS 251 (282)
T ss_dssp -CGGGGSSCCEEEECSS----CEEEEE---TTEEEEESTTCCCCGG
T ss_pred -CcccCCCceEEEcCCC----EEEEEE---CCEEEEecCCCCcccc
Confidence 1111245788877765 334443 9999999776655443
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.88 E-value=0.14 Score=42.21 Aligned_cols=222 Identities=10% Similarity=0.073 Sum_probs=125.5
Q ss_pred CCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccccee
Q 018591 35 GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY 113 (353)
Q Consensus 35 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
..++.|+|+++.+.++.+.-.+ .|.--.|- .+.|+-.+. ..|.-|+++.... +.+....-+.
T Consensus 85 g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~-P~kvFdR~~~-------------- 147 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGESQ-PVKMFDRHSS-------------- 147 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEECS-SEEEEEESSSSCC-CEEEEECCGG--------------
T ss_pred CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEcC-CeeEEecccCCCC-chhheecchh--------------
Confidence 5789999999888888776644 44444443 777777665 4899999876331 1111111000
Q ss_pred EeecccceeeeeecCCceEEEEEeC--CeEEEec-------CCCcEEEEEcCCceeeeeccccCcceEEEEEeCC-----
Q 018591 114 VQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-------WDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG----- 179 (353)
Q Consensus 114 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----- 179 (353)
-....|.....++ ++++..+ -.|.+.+|..+. +.-+.+++|......+..+++
T Consensus 148 ------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 148 ------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEEST 214 (494)
T ss_dssp ------------GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEE
T ss_pred ------------cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCce
Confidence 0012233333333 2222111 247789999764 455667788766666655332
Q ss_pred eEEEEcC---CCcEEEEeCCCCC-cc-c--ccceee---eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc
Q 018591 180 IVYSASA---DGKIKAWGKELGK-SH-C--HSLKGI---LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR 249 (353)
Q Consensus 180 ~l~~~~~---dg~i~iwd~~~~~-~~-~--~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 249 (353)
.+..+.. .+.+.+-++.... .. . ...... -....+.+ .++..++.-..++.-+.-|.+++||++++.
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP-vamqvs~kygviyviTK~G~i~lyDleTgt-- 291 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITKYGYIHLYDLETGT-- 291 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE-EEEEEETTTTEEEEEETTSEEEEEETTTCC--
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce-eEEEecccCCEEEEEecCceEEEEecccce--
Confidence 3333333 3789999986541 00 0 001111 11234556 788899988899999999999999999984
Q ss_pred eeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCc
Q 018591 250 WKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
....-+-...++..-+++ ..=++.....|.|.--.++...
T Consensus 292 --~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 292 --CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp --EEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred --eeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 333333333344333332 3334444477777666666543
No 321
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.87 E-value=0.12 Score=40.96 Aligned_cols=229 Identities=10% Similarity=0.084 Sum_probs=127.8
Q ss_pred cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591 27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG 105 (353)
Q Consensus 27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 105 (353)
+.+|--. ..++.++|+++.+.++.+.-.+ .|.--.|- .+.|+-.+. ..|.-|+++.... +.+....-+.
T Consensus 79 ~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT~-taVyHWs~~~~s~-P~kvFdR~~~------ 148 (365)
T 2xzh_A 79 KVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGESQ-PVKMFDRHSS------ 148 (365)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSEEEEEES-SEEEEEESSTTCC-CEEEEECCGG------
T ss_pred cEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCCCeEEEEcC-CcEEEEcccCCCC-Cceeeecchh------
Confidence 3444433 5789999999999988887644 55555554 677776665 4899999976432 1111111100
Q ss_pred eecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-------CCCcEEEEEcCCceeeeeccccCcceEEEEE
Q 018591 106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-------WDKTLKVWRVADLKCLESIKAHDDAVNGLVA 176 (353)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 176 (353)
-....|.....++ +.++..+ -.|.+.+|..+. +.-+.+++|......+..
T Consensus 149 --------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~ 207 (365)
T 2xzh_A 149 --------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKM 207 (365)
T ss_dssp --------------------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECC
T ss_pred --------------------cccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEec
Confidence 0012233333333 2222111 236788999764 455667777665555544
Q ss_pred eCC-----eEEEEcC---CCcEEEEeCCCCC-cc-c--ccceeee---eccCCceeeEEEEcCCCCeEEeecCCCcEEEe
Q 018591 177 SKG-----IVYSASA---DGKIKAWGKELGK-SH-C--HSLKGIL---EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGW 241 (353)
Q Consensus 177 ~~~-----~l~~~~~---dg~i~iwd~~~~~-~~-~--~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 241 (353)
+++ .+..+.. .+.+.+-++.... .. . .+....+ +...+.+ .++..++.-..++.-+.-|.+++|
T Consensus 208 ~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFP-Vamqvs~kygviyviTK~G~ihly 286 (365)
T 2xzh_A 208 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITKYGYIHLY 286 (365)
T ss_dssp TTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCE-EEEEEETTTTEEEEEETTSEEEEE
T ss_pred CCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCce-EEEEecccCCEEEEEeCCcEEEEE
Confidence 222 2222222 2689999885441 11 0 0111111 1234556 788888888889999999999999
Q ss_pred eccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc
Q 018591 242 EGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
|++++. +...-+-...++..-++ +..=++.....|.|.--.++...
T Consensus 287 DleTgt----~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 287 DLETGT----CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp ETTTCC----EEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred EcccCc----EEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 999983 43333333334433333 32334444477777766666543
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.85 E-value=0.15 Score=41.97 Aligned_cols=144 Identities=12% Similarity=0.069 Sum_probs=87.5
Q ss_pred eEEEEcCCCcEEEEeCCCCCcccccceeeeeccC--Cc-eeeEEEEcCCCCeEEeecCCCcEEEeeccccccce------
Q 018591 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHK--DV-SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW------ 250 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------ 250 (353)
.++.+ .++.||.-++.... ..+.+.... .. .+..+..+|+|++|+..+.. .|.+-.+..+....
T Consensus 34 ~i~~a-~~n~iR~~~i~~~~-----~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 34 RIVFI-QDNIIRWYNVLTDS-----LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp EEEEE-ETTEEEEEETTTCS-----SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHH
T ss_pred EEEEE-ECCEEEEEECCCCC-----cceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccc
Confidence 44433 34678877777443 233433331 11 24789999999999988654 68888877321100
Q ss_pred ---e-eeeeccc----cceeEEEEEEc-----CcEEEEecCCCeEEEEecCCCc-ceEEecc------ccCCCcCeEEEE
Q 018591 251 ---K-LACETKA----HEMAVLCVCLV-----GEFLCSGSADKSIGIWKREAFG-KLCRVGA------ITGHEGPVKCLQ 310 (353)
Q Consensus 251 ---~-~~~~~~~----~~~~v~~~~~~-----~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~------~~~h~~~v~~~~ 310 (353)
. ....+.. ...+|..+.|+ +..|++-..|+.|++||+.... .+..+.. +......|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 0 0111111 24568888886 6789999999999999998522 2221111 112235788999
Q ss_pred eecCCCCCCeEEEE--ccCCCeEEEE
Q 018591 311 ASPNAVGGGFLLYS--GSLDKSLRVW 334 (353)
Q Consensus 311 ~~~~~~~~~~~l~s--~~~dg~i~iw 334 (353)
|.++ +-.|.. .+.+|.|+-.
T Consensus 187 Fg~~----~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKD----GLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTT----SSCEEEEECTTSCEEEEE
T ss_pred EcCC----CcEEEEEecCCCCCEEEE
Confidence 9997 766666 5577877544
No 323
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.56 E-value=0.4 Score=42.97 Aligned_cols=191 Identities=12% Similarity=0.007 Sum_probs=98.3
Q ss_pred CCeEEEecCC----CcEEEEEcCCceeeeec--------cccCcceEEEEEe-CC-eEEEEcCC------CcEEEEeCCC
Q 018591 138 NGLIYSGSWD----KTLKVWRVADLKCLESI--------KAHDDAVNGLVAS-KG-IVYSASAD------GKIKAWGKEL 197 (353)
Q Consensus 138 ~~~l~~~~~d----g~v~iwd~~~~~~~~~~--------~~~~~~v~~i~~~-~~-~l~~~~~d------g~i~iwd~~~ 197 (353)
...++.|+.+ ..+.+||..+.+-...- ......-....+. ++ .++.|+.+ ..+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 3667777753 46888998765432211 1111222333442 44 55666543 3478888887
Q ss_pred CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC--cEEEeeccccccceeeeee---ccccceeEEEEEEc---
Q 018591 198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG--FVMGWEGNVEIVRWKLACE---TKAHEMAVLCVCLV--- 269 (353)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~--- 269 (353)
..-.. ...+...... .+++.-.+++.++.|+.++ .+.+||..+.. |..... .........++..+
T Consensus 478 ~~W~~---~~~~p~~R~~--h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 478 REWSM---IKSLSHTRFR--HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TEEEE---CCCCSBCCBS--CEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CcEEE---CCCCCCCccc--ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCC
Confidence 64211 1111111111 2333334778888887654 68999988763 333322 22122222223334
Q ss_pred CcEEEEecC--C-----CeEEEEecCCCcc-----eEEecccc-CCCcCeEEEEeecCCCCCCeEEEEccCC--------
Q 018591 270 GEFLCSGSA--D-----KSIGIWKREAFGK-----LCRVGAIT-GHEGPVKCLQASPNAVGGGFLLYSGSLD-------- 328 (353)
Q Consensus 270 ~~~l~~~~~--d-----g~i~iw~~~~~~~-----~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~l~s~~~d-------- 328 (353)
+.+++.|+. + +.+.+||+.+..- ...+.... ...... ++....+ +++++.||.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~----~~iyv~GG~~~~~~~~~~ 625 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITP----RKLLIVGGTSPSGLFDRT 625 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEET----TEEEEECCBCSSCCCCTT
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCC----CEEEEECCccCCCCCCCC
Confidence 667777765 2 4688999887651 23332211 111112 2333443 5788888743
Q ss_pred CeEEEEEcCCCC
Q 018591 329 KSLRVWWVSKQS 340 (353)
Q Consensus 329 g~i~iw~~~~~~ 340 (353)
..+.+||+.+.+
T Consensus 626 ~~v~~yd~~t~~ 637 (695)
T 2zwa_A 626 NSIISLDPLSET 637 (695)
T ss_dssp TSEEEEETTTTE
T ss_pred CeEEEEECCCCe
Confidence 458888887653
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.54 E-value=0.24 Score=40.09 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=75.8
Q ss_pred CCCcEEEEeCCCCCcccccceeeeec-----cCCceeeEEEEcC--CCC--eEEeecC--CCcEEEeeccccccceeeee
Q 018591 186 ADGKIKAWGKELGKSHCHSLKGILEG-----HKDVSLNSVVVSD--DGK--WVYGGGS--DGFVMGWEGNVEIVRWKLAC 254 (353)
Q Consensus 186 ~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~--~~~--~l~~~~~--dg~i~i~d~~~~~~~~~~~~ 254 (353)
.+|.|.++|..+.......+ .+.+ ..-.+ ..+.+.+ ++. ++++-.. +..|.+|++...........
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l--~~~g~~~~~~~f~P-hGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~ 157 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSEL--EIIGNTLDISSFNP-HGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK 157 (355)
T ss_dssp -CCEEEEEETTSSSCCEEEC--EEECSSCCGGGCCE-EEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEE--EccCCCCCcCceee-eeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe
Confidence 68999999987543111111 1222 11233 6777755 343 3444333 56788888766533334443
Q ss_pred eccccc-eeE--EEEEEcCcEEEEec-----------------CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 255 ETKAHE-MAV--LCVCLVGEFLCSGS-----------------ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 255 ~~~~~~-~~v--~~~~~~~~~l~~~~-----------------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
...+.. ... ..+..+|.+.++.. ..|.|+-++.. + ...+ ...-...+.++|+||
T Consensus 158 ~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~---~~~l~~pNGia~spD 231 (355)
T 3sre_A 158 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVV---AEGFDFANGINISPD 231 (355)
T ss_dssp EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEE---EEEESSEEEEEECTT
T ss_pred ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEe---ecCCcccCcceECCC
Confidence 333322 122 33445677766644 13555555542 2 1121 122345789999999
Q ss_pred CCCCCeEEEEc-cCCCeEEEEEcCCC
Q 018591 315 AVGGGFLLYSG-SLDKSLRVWWVSKQ 339 (353)
Q Consensus 315 ~~~~~~~l~s~-~~dg~i~iw~~~~~ 339 (353)
++.|+.+ +..+.|..|++...
T Consensus 232 ----g~~lYvadt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 232 ----GKYVYIAELLAHKIHVYEKHAN 253 (355)
T ss_dssp ----SSEEEEEEGGGTEEEEEEECTT
T ss_pred ----CCEEEEEeCCCCeEEEEEECCC
Confidence 7665554 55789999998753
No 325
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.47 E-value=0.22 Score=38.92 Aligned_cols=240 Identities=14% Similarity=0.148 Sum_probs=130.1
Q ss_pred ceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeecc
Q 018591 18 SVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTL 97 (353)
Q Consensus 18 ~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~ 97 (353)
.|..|+......+.-. ||.|..|-....-.+..-......|..++......+.-. ||.|..|-.....+.- +
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg------~ 96 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTT------V 96 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTC------C
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCC------C
Confidence 6788887644433335 999999975432211111111336777776655444444 8999999866533110 0
Q ss_pred ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe
Q 018591 98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS 177 (353)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~ 177 (353)
|. .-...|..++......+.-. ||.|+.|-....-.+.........|..++..
T Consensus 97 P~--------------------------~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G 149 (282)
T 3qhy_B 97 PA--------------------------EARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG 149 (282)
T ss_dssp CG--------------------------GGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC
T ss_pred Cc--------------------------ccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc
Confidence 10 11246777877775555556 9999999865432222111224567888775
Q ss_pred CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc
Q 018591 178 KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 178 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 257 (353)
....+.-. ||.+..|-.....+.. ........|..++...+. .++. .||.+..|-....-......
T Consensus 150 ~~~~~~l~-~G~v~~wG~n~~gqlg------~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~---- 215 (282)
T 3qhy_B 150 VYTALAVK-NGGVIAWGDNYFGQTT------VPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPT---- 215 (282)
T ss_dssp SSEEEEEE-TTEEEEEECCTTSTTS------CCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCG----
T ss_pred cCEEEEEE-CCEEEEecCCCCCCCC------CceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCc----
Confidence 55434344 7999999765433110 000111223566655442 2333 58999999655431111111
Q ss_pred ccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 258 AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 258 ~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
.....+..++....+.++-. ||.|+.|-..... ++.. ...|.+++..+.
T Consensus 216 ~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~g---q~~v----~~~v~~iaaG~~ 264 (282)
T 3qhy_B 216 EALSGVSAIASGEWYSLALK-NGKVIAWGSSRTA---PSSV----QSGVSSIEAGPN 264 (282)
T ss_dssp GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCCC---CGGG----SSCEEEEEECSS
T ss_pred ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCCc---cccC----CCCcEEEEECcC
Confidence 11234566666544444444 9999999876544 2221 235777776665
No 326
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.47 E-value=0.46 Score=42.61 Aligned_cols=152 Identities=9% Similarity=-0.002 Sum_probs=79.8
Q ss_pred CeEEEecCC------CcEEEEEcCCce--eeeeccccCcceEEEEE-eCCeEEEEcCCC--cEEEEeCCCCCccccccee
Q 018591 139 GLIYSGSWD------KTLKVWRVADLK--CLESIKAHDDAVNGLVA-SKGIVYSASADG--KIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 139 ~~l~~~~~d------g~v~iwd~~~~~--~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~ 207 (353)
..++.|+.+ +.+.+||..+.+ .+..+......-.+..+ .+..++.|+.++ .+.+||..+..-.......
T Consensus 453 ~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g 532 (695)
T 2zwa_A 453 QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD 532 (695)
T ss_dssp EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSS
T ss_pred EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCC
Confidence 566666643 357889987743 23223222222233333 444666776654 6899998876521111100
Q ss_pred eeeccCCceeeEEEEcCC-CCeEEeecC--C-----CcEEEeecccccc----ceeeeeec-cccceeEEEEEEc-CcEE
Q 018591 208 ILEGHKDVSLNSVVVSDD-GKWVYGGGS--D-----GFVMGWEGNVEIV----RWKLACET-KAHEMAVLCVCLV-GEFL 273 (353)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~----~~~~~~~~-~~~~~~v~~~~~~-~~~l 273 (353)
......... .++.+..+ ++.++.|+. + ..+.+||+.+... .|...... ........+...+ +.++
T Consensus 533 ~~p~~r~~~-~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iy 611 (695)
T 2zwa_A 533 EFFQNSLVS-AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL 611 (695)
T ss_dssp GGGGSCCBS-CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEE
T ss_pred CCCCcccce-eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEE
Confidence 011111111 33555555 667777765 2 3588899887741 12222221 1112223344555 7888
Q ss_pred EEecC--------CCeEEEEecCCCc
Q 018591 274 CSGSA--------DKSIGIWKREAFG 291 (353)
Q Consensus 274 ~~~~~--------dg~i~iw~~~~~~ 291 (353)
+.|+. ...+.+||+.+.+
T Consensus 612 v~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 612 IVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EECCccCCCCCCCCCeEEEEECCCCe
Confidence 88874 3468999988753
No 327
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.43 E-value=0.36 Score=40.98 Aligned_cols=155 Identities=10% Similarity=-0.015 Sum_probs=88.9
Q ss_pred ceEEEEEeC---CeEEEEcC-CCcEEEEeCCCCCcccccceeeeecc---CCceeeEEEE-------cCCCCeEEeecCC
Q 018591 170 AVNGLVASK---GIVYSASA-DGKIKAWGKELGKSHCHSLKGILEGH---KDVSLNSVVV-------SDDGKWVYGGGSD 235 (353)
Q Consensus 170 ~v~~i~~~~---~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~~~~~d 235 (353)
....|++.+ +.|+.+.. .+.|++.|+..+. +....... ...+ ..++| +++++.|+++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----v~~l~~~~~~~~~~p-~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----LSSPLNINTIPTNRI-RSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----EEEEECCTTSSCSBE-EEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----EEEEEccCccccCCC-cEEEEeecccccCCCCCEEEEEeCC
Confidence 456778854 34544444 4678999988875 33322221 2234 88999 9999866666554
Q ss_pred C-c------EEEeeccc-cccce----eeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecC-------CCcc---
Q 018591 236 G-F------VMGWEGNV-EIVRW----KLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKRE-------AFGK--- 292 (353)
Q Consensus 236 g-~------i~i~d~~~-~~~~~----~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~-------~~~~--- 292 (353)
+ . |.+++... +.... .....+ .+. .-.++.++ +.++++-..++.|+.+|+. ++..
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCCcccCceEEEEecCCCCceeecccceeeccC-CCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 3 2 55665333 11110 111111 122 22355563 5666677788899999987 4432
Q ss_pred --------eEEeccccCCCcCeEEEEeecCCCCCCeE-EEEccCCCeEEEEEcC
Q 018591 293 --------LCRVGAITGHEGPVKCLQASPNAVGGGFL-LYSGSLDKSLRVWWVS 337 (353)
Q Consensus 293 --------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-l~s~~~dg~i~iw~~~ 337 (353)
...+... +.......|+|+|+ +++ +++-+....|+.++..
T Consensus 292 ~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~----G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 292 IVKNNPNTFKQLFTI-ADPSWEFQIFIHPT----GKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp BGGGCTTTEEEEEEC-SSSSCCEEEEECTT----SSEEEEEETTTTEEEEEEEE
T ss_pred cccccccccceeEec-CCCCCceEEEEcCC----CCEEEEEeCCCCEEEEEecC
Confidence 1122222 22345689999999 884 5555667788886654
No 328
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.33 E-value=0.78 Score=43.73 Aligned_cols=258 Identities=9% Similarity=0.003 Sum_probs=131.4
Q ss_pred EEEEE-CCcEEEEEeCCCcEEEEeCCCc--------eeeEEeccCceeeEEEEEe------CCEEEEec---CCCcEEEE
Q 018591 20 SSLAL-CGEFILSASQGKDIIVWQQPDL--------RMFTKFGHGDGSVKAVVTV------GNKVFTAH---QDSRIRVW 81 (353)
Q Consensus 20 ~~~~~-~~~~l~s~~~dg~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~------~~~l~s~~---~dg~i~~w 81 (353)
+++++ ++.+|+.||..|.=.+|.+... +.+..+.. -++|..+... ...+++++ .+|.+++.
T Consensus 330 ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N-~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~l 408 (1158)
T 3ei3_A 330 ECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTN-LGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRII 408 (1158)
T ss_dssp SEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECC-CCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEE
T ss_pred cEEEEECCCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecC-cCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEE
Confidence 44555 3668999998887777776533 33445544 4678877764 13555443 55778776
Q ss_pred EcccCccceeEEeeccccccceeeeec----ccceeEeecc-cceeeeeecCCceEEEEEeC-----CeEEEecC-----
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFM----KQSNYVQTRR-HHKRLWIEHADSISCLTVYN-----GLIYSGSW----- 146 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~----- 146 (353)
.-.-+.. ......++.......... ....++.... ....++.-....+..+...+ ..|+++..
T Consensus 409 r~Gi~~~--~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~i 486 (1158)
T 3ei3_A 409 RNGIGIH--EHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQL 486 (1158)
T ss_dssp EESBCEE--EEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEE
T ss_pred ecCCCEE--EEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEEEcCCCeE
Confidence 5322211 111112222111110000 0111221111 11112211112222222111 33444321
Q ss_pred ----CCcEEEEEcCCceeeeecccc-CcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591 147 ----DKTLKVWRVADLKCLESIKAH-DDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV 221 (353)
Q Consensus 147 ----dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 221 (353)
...|++.+......+..+... ...|...+.++..++.++ ++.+.++++.+++.. ......- ...|.+++
T Consensus 487 vQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~---~~~~~~l--~~evscl~ 560 (1158)
T 3ei3_A 487 IQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELR---QISHTEM--EHEVACLD 560 (1158)
T ss_dssp EEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEE---EEEEEEC--SSCEEEEE
T ss_pred EEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCcee---eecccCC--CCceEEEE
Confidence 234667776555556566543 346777777777776664 678888888765311 1111111 22358999
Q ss_pred EcCC------CCeEEeecC-CCcEEEeeccccccceeeeeeccc--cceeEEEEEEc-CcEEEEecCCCeEEEEecC
Q 018591 222 VSDD------GKWVYGGGS-DGFVMGWEGNVEIVRWKLACETKA--HEMAVLCVCLV-GEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 222 ~~~~------~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~ 288 (353)
+.|. +.++++|.. |++++++++...... ....+.. ....+.-..+. ..+|..|-.||.+.-+.++
T Consensus 561 i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~--~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 561 ITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL--HKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp CCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE--EEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred eecCCCCcccccEEEEEECCCCEEEEEECCCCCeE--EEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 8763 468999996 999999999864221 1112211 12223223333 3578899999988766554
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.31 E-value=0.33 Score=39.27 Aligned_cols=172 Identities=9% Similarity=0.093 Sum_probs=92.3
Q ss_pred CCCcEEEEEcCCce-eeeec--cc-----cCcceEEEEE-e--CC--eEEEE-cC--CCcEEEEeCCCCCcccccceeee
Q 018591 146 WDKTLKVWRVADLK-CLESI--KA-----HDDAVNGLVA-S--KG--IVYSA-SA--DGKIKAWGKELGKSHCHSLKGIL 209 (353)
Q Consensus 146 ~dg~v~iwd~~~~~-~~~~~--~~-----~~~~v~~i~~-~--~~--~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~ 209 (353)
.+|.|.++|+.+.. ....+ .+ .......|.+ . ++ .|+++ .. +.++.+|++..... .......+
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~-~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK-SLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT-EEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC-EEEEEecc
Confidence 68999999987321 11222 11 2345667776 3 23 34444 33 46788887765431 12233344
Q ss_pred eccCCceeeEEEEcCCCCeEEeec-----------------CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591 210 EGHKDVSLNSVVVSDDGKWVYGGG-----------------SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF 272 (353)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (353)
.+..-...+.+.+.++|.+.++.. ..|.+..++... .+... ..-....-.+++++++.
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~----~~~~~-~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND----VRVVA-EGFDFANGINISPDGKY 234 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC----CEEEE-EEESSEEEEEECTTSSE
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe----EEEee-cCCcccCcceECCCCCE
Confidence 444333348999999998777654 124455555421 11111 11122333566777766
Q ss_pred EEEe-cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec-CCCCCCeEEEEccCC
Q 018591 273 LCSG-SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP-NAVGGGFLLYSGSLD 328 (353)
Q Consensus 273 l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~l~s~~~d 328 (353)
|+.+ +..+.|+.|++...........+ ...+..-.+++.+ + |++.+++..+
T Consensus 235 lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~----G~lwva~~~~ 287 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVT----GDLWVGCHPN 287 (355)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTT----CCEEEEEESC
T ss_pred EEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCC----CcEEEEecCC
Confidence 6554 46789999998743323222223 2235567778887 6 7776655433
No 330
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.21 E-value=0.59 Score=41.22 Aligned_cols=191 Identities=13% Similarity=0.106 Sum_probs=100.8
Q ss_pred CceEEEEEC--Cc-EEEEEeCCCcEEEEeCCCcee-eEEeccCceeeEEEEEe--CCE-EEEecCCCcEEEEEcccCccc
Q 018591 17 GSVSSLALC--GE-FILSASQGKDIIVWQQPDLRM-FTKFGHGDGSVKAVVTV--GNK-VFTAHQDSRIRVWKVSRSSEN 89 (353)
Q Consensus 17 ~~v~~~~~~--~~-~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~-l~s~~~dg~i~~w~~~~~~~~ 89 (353)
.....|+|+ ++ ++++-...+.|..+++..... ...+...-.....++++ ++. .++-...+.|.+.+++.....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 346678885 34 444444567888888765432 22333323456778887 454 445556788999988764311
Q ss_pred eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeeecc
Q 018591 90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLESIK 165 (353)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~~~ 165 (353)
. ++. ..-.....|+++| +.|+.... .+.|...+++.........
T Consensus 120 ~--l~~------------------------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~ 167 (619)
T 3s94_A 120 V--LFW------------------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN 167 (619)
T ss_dssp E--EEC------------------------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred E--EEe------------------------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe
Confidence 1 110 1122344677766 55555543 3566666654322222222
Q ss_pred ccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591 166 AHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 166 ~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 242 (353)
..-...+.|++. .+ .+++-...+.|...|+.... ......+....+ ..+++..+ ...++-...+.|...|
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-----~~~~~~~~~~~P-~gi~~~~~-~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-----RQAVVKGSLPHP-FALTLFED-ILYWTDWSTHSILACN 240 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-----EC---------C-CCEEESSS-EEEEECTTTCSEEEEE
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-----cEEEEeCCCCCc-eEEEEeCC-EEEEecCCCCEEEEEE
Confidence 233456788884 34 44455567789999987654 111222222233 56777665 4455555667788887
Q ss_pred cccc
Q 018591 243 GNVE 246 (353)
Q Consensus 243 ~~~~ 246 (353)
..++
T Consensus 241 ~~tg 244 (619)
T 3s94_A 241 KYTG 244 (619)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7554
No 331
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.11 E-value=0.66 Score=40.89 Aligned_cols=282 Identities=11% Similarity=-0.011 Sum_probs=136.0
Q ss_pred CceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC--CCcEEEEEcccCccc
Q 018591 17 GSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ--DSRIRVWKVSRSSEN 89 (353)
Q Consensus 17 ~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~i~~w~~~~~~~~ 89 (353)
.....|+++ +++.++-...+.|.+.++........+...-..-..|+++ +..|+.... .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 467788886 4455565667899999986543333332333445667776 455554442 34454445443221
Q ss_pred eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCCceeeeeccc
Q 018591 90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~ 166 (353)
...+ ...-...+.+++++ +.|+.+ ...+.|...|+..........+
T Consensus 163 -~~l~------------------------------~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~ 211 (619)
T 3s94_A 163 -FIII------------------------------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG 211 (619)
T ss_dssp -EEEE------------------------------CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----
T ss_pred -EEEE------------------------------eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC
Confidence 0111 01223456788875 444444 4567788888764333222221
Q ss_pred cCcceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCcccc------cce--eeee------ccC-----CceeeEEEE----
Q 018591 167 HDDAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCH------SLK--GILE------GHK-----DVSLNSVVV---- 222 (353)
Q Consensus 167 ~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~------~~~--~~~~------~~~-----~~~v~~~~~---- 222 (353)
......+|++.++ .+++-...+.|...|..+++.... .+. ..+. +.. ......+++
T Consensus 212 ~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~ 291 (619)
T 3s94_A 212 SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPV 291 (619)
T ss_dssp ----CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSS
T ss_pred CCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCC
Confidence 2223346666444 455555677888888766542100 000 0000 000 000011111
Q ss_pred -------cCCCC---------------eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEec
Q 018591 223 -------SDDGK---------------WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGS 277 (353)
Q Consensus 223 -------~~~~~---------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~ 277 (353)
.|.|- +|+.+ ..+.|+..++....... ...... .-....+++++ +.++++-.
T Consensus 292 ~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~-~~~~~~-~l~~~~~ld~d~~~~~ly~sD~ 368 (619)
T 3s94_A 292 KPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTD-IVLQLE-DIRHAIAIDYDPVEGYIYWTDD 368 (619)
T ss_dssp TTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCC-EECCCS-CCSSEEEEEEETTTTEEEEEET
T ss_pred CCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccce-eEEecc-ccCccEEEEEEcCCCeEEEEeC
Confidence 11111 11111 12345545554332110 111111 12234566665 44555555
Q ss_pred CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 278 ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
..+.|+.++++..... .+ +...-.....+++.+. ++++.++-+..+.|.+.++...
T Consensus 369 ~~~~I~r~~~~g~~~~-~v--~~~~~~~p~GlAvD~~---~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 369 EVRAIRRSFIDGSGSQ-FV--VTAQIAHPDGIAVDWV---ARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp TTTEEEEEETTSCSCE-EE--ECSSCSCCCEEEEETT---TTEEEEEETTTTEEEEEETTSC
T ss_pred CCCeEEEEEcCCCccE-EE--EECCCCCcCceEEecc---cCcEEEEeCCCCcEEEEeCCCC
Confidence 6788999988764321 22 1222345678888864 1566666677788998887754
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.06 E-value=0.54 Score=45.24 Aligned_cols=178 Identities=13% Similarity=0.183 Sum_probs=97.9
Q ss_pred CCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccccee
Q 018591 35 GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY 113 (353)
Q Consensus 35 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
..++.|+|+++...++.+.-.. .|.--.|- .+.|+..+. ..|.-|+++....
T Consensus 85 g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~------------------------- 137 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGESQ------------------------- 137 (1630)
T ss_pred CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEcC-CeEEEeccCCCCc-------------------------
Confidence 5678888887777666665533 34444443 556655554 4788888865321
Q ss_pred Eeecccceeeeeec----CCceEEEEEeC--CeEE-Ee------cCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--
Q 018591 114 VQTRRHHKRLWIEH----ADSISCLTVYN--GLIY-SG------SWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-- 178 (353)
Q Consensus 114 ~~~~~~~~~~~~~~----~~~i~~~~~~~--~~l~-~~------~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-- 178 (353)
+.+++..| ...|..-..++ ++++ +| .-.|.+.+|..+. +..+.+++|......+..++
T Consensus 138 ------P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~ 210 (1630)
T 1xi4_A 138 ------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNA 210 (1630)
T ss_pred ------cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCC
Confidence 11111111 12333333333 2222 21 2458899998754 44455666665554444421
Q ss_pred --CeEEE-Ec---CCCcEEEEeCCCC-Cc---ccccceeee---eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591 179 --GIVYS-AS---ADGKIKAWGKELG-KS---HCHSLKGIL---EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV 245 (353)
Q Consensus 179 --~~l~~-~~---~dg~i~iwd~~~~-~~---~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 245 (353)
..+++ +. ..+.+.+-++... .. ........+ ....+.+ .++..++.-..+..-+.-|.+++||+.+
T Consensus 211 ~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp-v~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 211 EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcc-eEEEeccccCEEEEEecCceEEEEeccc
Confidence 12222 11 1368999888554 10 000111111 1224455 6788888888888999999999999999
Q ss_pred cc
Q 018591 246 EI 247 (353)
Q Consensus 246 ~~ 247 (353)
+.
T Consensus 290 ~~ 291 (1630)
T 1xi4_A 290 GT 291 (1630)
T ss_pred ch
Confidence 84
No 333
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.66 E-value=0.69 Score=37.47 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=34.2
Q ss_pred EcCcEEEEecCCCeEEEEecCCCcce---EEeccccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591 268 LVGEFLCSGSADKSIGIWKREAFGKL---CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS 326 (353)
Q Consensus 268 ~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~ 326 (353)
++|.++++....+.|...+++..... .....+..-...+..+++.|| |.++++..
T Consensus 276 ~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd----G~lyv~~~ 333 (352)
T 2ism_A 276 FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPD----GALYVTTS 333 (352)
T ss_dssp ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTT----SCEEEEEC
T ss_pred ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCC----CcEEEEEe
Confidence 46777777777788888887654321 011111122357899999999 77666653
No 334
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=95.56 E-value=0.81 Score=37.66 Aligned_cols=283 Identities=11% Similarity=0.063 Sum_probs=140.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCC-ce-------eeEE---ecc-CceeeEEEEEeCCEEEEecCCCcEEEEEcccCccc---
Q 018591 25 CGEFILSASQGKDIIVWQQPD-LR-------MFTK---FGH-GDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSEN--- 89 (353)
Q Consensus 25 ~~~~l~s~~~dg~v~vwd~~~-~~-------~~~~---~~~-~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~--- 89 (353)
..+.++.-..||+|..|-... ++ .... +.. ....+..++......+....||.|..|-.....+.
T Consensus 9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 455666677788888885332 11 1111 111 11245556555777777788999999976543210
Q ss_pred ---eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc------
Q 018591 90 ---VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL------ 158 (353)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~------ 158 (353)
.......++ .-....+..+.... ...++-..||.|+.|-....
T Consensus 89 ~~~~~~~p~~v~--------------------------~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 89 GTESVSTPTLLE--------------------------SIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp SSCCEEEEEECG--------------------------GGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CcCCccCCEEcc--------------------------cccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 000000000 01112333344443 56666678999999965321
Q ss_pred -----eeeeeccc-cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCc------ccccceeeeeccCCceeeEEEEcCCC
Q 018591 159 -----KCLESIKA-HDDAVNGLVASKGIVYSASADGKIKAWGKELGKS------HCHSLKGILEGHKDVSLNSVVVSDDG 226 (353)
Q Consensus 159 -----~~~~~~~~-~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (353)
.....+.. ....|..++......++...+|.|..|-.....+ ................+..++.....
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~ 222 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD 222 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS
T ss_pred CCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC
Confidence 01111211 2336778887677777778899999996432110 00001111122222233566655433
Q ss_pred CeEEeecCCCcEEEeecccccc--------ceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc-------
Q 018591 227 KWVYGGGSDGFVMGWEGNVEIV--------RWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG------- 291 (353)
Q Consensus 227 ~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~------- 291 (353)
.+.++-..+|.|..|-....-. ...+..........+..++.-..+.++-..+|.|+.|-.....
T Consensus 223 ~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 302 (389)
T 3kci_A 223 AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302 (389)
T ss_dssp CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC
Confidence 5666667889999986443110 0011111111223466677666666677889999999754321
Q ss_pred ----ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 292 ----KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 292 ----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
.+..+..+. ...|..++.... ..+....||.|..|-.....+
T Consensus 303 ~~~~~P~~v~~l~--~~~v~~ia~G~~------h~~al~~~G~v~~wG~n~~Gq 348 (389)
T 3kci_A 303 DHVRRPRQVQGLQ--GKKVIAIATGSL------HCVCCTEDGEVYTWGDNDEGQ 348 (389)
T ss_dssp CCEEEEEECGGGT--TCCEEEEEECSS------EEEEEETTCCEEEEECCTTST
T ss_pred ccccCCeEeccCC--CCCEEEEEeccC------eEEEECCCCCEEEeeCCCCCc
Confidence 122222222 235777776644 444456899999998765433
No 335
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.21 E-value=0.99 Score=36.56 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=56.6
Q ss_pred cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceee---eeccCCceeeEEEEcCC---CCeEEeecC----C--
Q 018591 169 DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGI---LEGHKDVSLNSVVVSDD---GKWVYGGGS----D-- 235 (353)
Q Consensus 169 ~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~---~~~l~~~~~----d-- 235 (353)
.....+++ +++.++.+..+|.|+++|. +++ . .... .......+ ..++++|+ +..|+++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~---~~~~~~v~~~g~~g~-~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-K---LVASFDVANVGEAGL-LGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCE-E---EEEECCCCCSTTCSE-EEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-e---EeeccceeecCCCce-eeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 34578888 6667777788899999973 332 1 1111 11122334 89999997 455554433 2
Q ss_pred --CcEEEeeccccccc---ee-eee---eccccceeEEEEEEcCcEEEEec
Q 018591 236 --GFVMGWEGNVEIVR---WK-LAC---ETKAHEMAVLCVCLVGEFLCSGS 277 (353)
Q Consensus 236 --g~i~i~d~~~~~~~---~~-~~~---~~~~~~~~v~~~~~~~~~l~~~~ 277 (353)
..|..|+....... .+ +.. ....|...-..+.++|.++++-+
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 56777776543100 01 111 11234445566677787666543
No 336
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.11 E-value=1.6 Score=38.49 Aligned_cols=197 Identities=10% Similarity=0.008 Sum_probs=105.3
Q ss_pred ceEEEEEeC--CeEEEe-cCCCcEEEEEcCCceeeeeccc------cCcceEEEEEe---CCeEEEEcCCCcEEEEeCCC
Q 018591 130 SISCLTVYN--GLIYSG-SWDKTLKVWRVADLKCLESIKA------HDDAVNGLVAS---KGIVYSASADGKIKAWGKEL 197 (353)
Q Consensus 130 ~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~ 197 (353)
.+..++|++ +.|+.+ ...+.|+.+++........+.. ....+..+++. .+++++-+..+.|.+.++..
T Consensus 341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G 420 (628)
T 4a0p_A 341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC
Confidence 455677776 444444 3356677776543222222211 12356778872 33666777788999999864
Q ss_pred CCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591 198 GKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC 274 (353)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 274 (353)
.. ...........+ ..+++.| .|.++++-.... .|...++..... ..+.. .......-.++.+..+.|.
T Consensus 421 ~~-----~~~l~~~~l~~P-r~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~-~~l~~P~gla~D~~~~~LY 492 (628)
T 4a0p_A 421 RS-----VGVVLKGEQDRP-RAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFF-SGLSKPIALALDSRLGKLF 492 (628)
T ss_dssp CE-----EEEEEECTTCCE-EEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEEC-SSCSCEEEEEEETTTTEEE
T ss_pred Ce-----EEEEEeCCCCce-eeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEe-ccCCCccEEEEeCCCCEEE
Confidence 42 222233334455 9999999 455444433222 566666654321 11111 1111222334444444554
Q ss_pred -EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 275 -SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 275 -~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
+=+..+.|...+++.... ..+. ........+|+... +.++.+-...+.|...+..+++..
T Consensus 493 w~D~~~~~I~~~~~dG~~r-~~~~--~~~~~~P~glav~~-----~~ly~tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 493 WADSDLRRIESSDLSGANR-IVLE--DSNILQPVGLTVFE-----NWLYWIDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp EEETTTTEEEEEETTSCSC-EEEE--CSSCSCEEEEEEET-----TEEEEEETTTTEEEEEETTSSSCC
T ss_pred EEeCCCCEEEEEeCCCCce-EEEE--cCCCCCcEEEEEEC-----CEEEEEECCCCeEEEEECcCCCCc
Confidence 445578899999865432 2222 12233467777764 455566566677887887766543
No 337
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=94.80 E-value=1.5 Score=36.52 Aligned_cols=292 Identities=8% Similarity=0.001 Sum_probs=148.9
Q ss_pred eEEEEECCcEEEEEeCCCcEEEEeCCC-c-----------eeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccC
Q 018591 19 VSSLALCGEFILSASQGKDIIVWQQPD-L-----------RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 19 v~~~~~~~~~l~s~~~dg~v~vwd~~~-~-----------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~ 86 (353)
+..+++...+-+.-..||.|..|-... + .....+.. -..|..++....+.+....||.|..|-....
T Consensus 26 ~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~ 104 (423)
T 3mvd_K 26 RARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAG-IPDAVDISAGGMHNLVLTKSGDIYSFGCNDE 104 (423)
T ss_dssp ---CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCS-CSSEEEEEECSSEEEEEETTSCEEEEECCSS
T ss_pred eeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccC-CCCceEEeeCCCeEEEEeCCCeEEEeECCCC
Confidence 334444444444456788888884221 1 11111222 2346666666778888889999999976543
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEc--CC-ce----
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRV--AD-LK---- 159 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~--~~-~~---- 159 (353)
...-........ ...+..+ .....|..++......++-..||.|+.|-. .. ++
T Consensus 105 GqLG~~~~~~~~------------------~~~P~~v--~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~ 164 (423)
T 3mvd_K 105 GALGRDTSEDGS------------------ESKPDLI--DLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLT 164 (423)
T ss_dssp STTCSCCCSTTS------------------SSSCEEC--CCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESB
T ss_pred cCCCCCCcCCcc------------------ccCCeEE--cCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcC
Confidence 210000000000 0000000 122357777776666667788999999975 22 22
Q ss_pred -------eeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc------------------cccceeeeeccCC
Q 018591 160 -------CLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH------------------CHSLKGILEGHKD 214 (353)
Q Consensus 160 -------~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------~~~~~~~~~~~~~ 214 (353)
++.. .....|..++......++-..+|.|+.|-.....+. ...+.. ......
T Consensus 165 ~~~~~~~p~~~--~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~-v~~~~~ 241 (423)
T 3mvd_K 165 IDGNKRTPIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQ-LIITRA 241 (423)
T ss_dssp TTBCEEEEEES--STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEE-ECCTTC
T ss_pred CCCCCceeeEe--cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeE-EeecCC
Confidence 1111 123467788876677777788999999954322100 001111 111112
Q ss_pred ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc-------eeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEec
Q 018591 215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR-------WKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~ 287 (353)
..+..++.... ..++.-..+|.+..|-....... .............+..++.-..+.++-..||.|+.|-.
T Consensus 242 ~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~ 320 (423)
T 3mvd_K 242 KPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGR 320 (423)
T ss_dssp CCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred ccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEEC
Confidence 22344444322 22333367888888864431100 00000111112356677766677777788999999975
Q ss_pred CCCcc---------eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 288 EAFGK---------LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 288 ~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
....+ ......+..-...|..|+.... .-+.-..||.|..|-.....+
T Consensus 321 n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~------hs~alt~~G~v~~wG~n~~Gq 377 (423)
T 3mvd_K 321 PEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV------CSYAVTIDGKLYSWGSGVNNQ 377 (423)
T ss_dssp CGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT------EEEEEETTSCEEEEECCTTSC
T ss_pred CCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC------eEEEEcCCCCEEEECCCCCCC
Confidence 43210 1111112222236888887754 333336899999997665433
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.62 E-value=0.98 Score=33.56 Aligned_cols=106 Identities=11% Similarity=-0.008 Sum_probs=57.1
Q ss_pred eeEEEEcCCCCeEEeecCCCcEEEeeccccccc-----eeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc
Q 018591 217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR-----WKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
+..++|+|++.+.++ .+|.+.-.+..+.... ...+....-+.-....+.++|.+.++ .||.|+-++..+..
T Consensus 43 ~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 43 FKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred ceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 489999999986666 6777666665432110 01111000111122333445666666 56999888764322
Q ss_pred ceEEecc--c--cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591 292 KLCRVGA--I--TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR 332 (353)
Q Consensus 292 ~~~~~~~--~--~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~ 332 (353)
...-+.. . .+-=..+..|.+.|+ |.+.+.. |+.+.
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~----G~Lyav~--dg~ly 157 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPN----GYLYAVH--GQQFY 157 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTT----SCEEEEE--TTEEE
T ss_pred CCceeccccEeccCCCCceEEEEECCC----ceEEEEe--CCcEE
Confidence 1111111 0 011146799999999 8877777 77743
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.08 E-value=1.3 Score=32.88 Aligned_cols=106 Identities=8% Similarity=-0.001 Sum_probs=59.2
Q ss_pred CceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcc--------eEEEEE-eCCeEEEEcCCCcEEEEeCCCC
Q 018591 129 DSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA--------VNGLVA-SKGIVYSASADGKIKAWGKELG 198 (353)
Q Consensus 129 ~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~i~~-~~~~l~~~~~dg~i~iwd~~~~ 198 (353)
..+..++|+| ..|.+. .+|.++-.+..+..... +.+.... ..++.+ +++.|.++ .||.|+-++..+.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCccc-ccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence 3677999999 556665 77877766654422111 1011122 367777 44466665 6799988876433
Q ss_pred Ccccc-cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 199 KSHCH-SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 199 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
..... .....+....-..+..+.+.|+|.+.++. |+.+.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 21111 11111111122234899999999877776 77654
No 340
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.82 E-value=2.4 Score=35.05 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=86.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCceeeEEeccC----ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccc
Q 018591 25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHG----DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLP 98 (353)
Q Consensus 25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~ 98 (353)
+|..++.+-. +.||.-++.+....+.+... -..|..+..+ |++|+..+. ..|.|-.+..+....... ..
T Consensus 31 n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~--~~- 105 (452)
T 3pbp_A 31 NGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDV--SI- 105 (452)
T ss_dssp TTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCH--HH-
T ss_pred CCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccc--cc-
Confidence 4555555543 67887787654444444332 1246667776 777777765 589998887432110000 00
Q ss_pred cccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-----CeEEEecCCCcEEEEEcCCc--eeeeecc------
Q 018591 99 TTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-----GLIYSGSWDKTLKVWRVADL--KCLESIK------ 165 (353)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~dg~v~iwd~~~~--~~~~~~~------ 165 (353)
. ....... .... +.. .....+|..+.|+| ..|++-..|+.|++||+... ++. .++
T Consensus 106 ~-~~~q~~t------y~l~--~~~--~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~f 173 (452)
T 3pbp_A 106 Q-DAFQIFH------YSID--EEE--VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSF 173 (452)
T ss_dssp H-HTTEEEE------EEGG--GCC----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEE
T ss_pred c-cccceeE------EEcC--Ccc--cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccccc
Confidence 0 0000000 0000 000 12467899999999 68999999999999999752 222 221
Q ss_pred ---ccCcceEEEEEeCC--eEEE--EcCCCcEEEEe
Q 018591 166 ---AHDDAVNGLVASKG--IVYS--ASADGKIKAWG 194 (353)
Q Consensus 166 ---~~~~~v~~i~~~~~--~l~~--~~~dg~i~iwd 194 (353)
.....|.+++|.++ .|+. .+.+|.|+-.-
T Consensus 174 g~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 174 GLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 12367889999444 4444 55788887653
No 341
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=93.48 E-value=2.8 Score=34.67 Aligned_cols=297 Identities=9% Similarity=0.061 Sum_probs=154.8
Q ss_pred ccCceEEEEECCcEEEEEeCCCcEEEEeCCC-ce----------eeEEecc-CceeeEEEEEeCCEEEEecCC-CcEEEE
Q 018591 15 HVGSVSSLALCGEFILSASQGKDIIVWQQPD-LR----------MFTKFGH-GDGSVKAVVTVGNKVFTAHQD-SRIRVW 81 (353)
Q Consensus 15 h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~-~~----------~~~~~~~-~~~~v~~~~~~~~~l~s~~~d-g~i~~w 81 (353)
-...|..|+.-....+.-..||.|..|-... ++ ....+.. ....|..++.-..+.+....+ +.|..|
T Consensus 14 ~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp -CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred CccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 3457888888767777777899999996432 11 1112211 123577777665555555555 489999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCc-e-
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADL-K- 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~-~- 159 (353)
-....... .. ...... . .+..+..-....|..++......++-..||.|+.|-.... +
T Consensus 94 G~n~~GqL-----G~-g~~~~~---------~-----~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqL 153 (406)
T 4d9s_A 94 GWGDFGRL-----GH-GNSSDL---------F-----TPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQL 153 (406)
T ss_dssp ECCGGGTT-----CS-SSCCCE---------E-----EEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred cCCCCcCC-----CC-CCCCcc---------c-----cceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccC
Confidence 75432210 00 000000 0 0000000123367777777667777788999999975431 1
Q ss_pred ---------eeeeccc-cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCc------ccccceeeeeccCCceeeEEEEc
Q 018591 160 ---------CLESIKA-HDDAVNGLVASKGIVYSASADGKIKAWGKELGKS------HCHSLKGILEGHKDVSLNSVVVS 223 (353)
Q Consensus 160 ---------~~~~~~~-~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~ 223 (353)
....+.. ....|..++......++...+|.|+.|-.....+ ................+..++..
T Consensus 154 G~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G 233 (406)
T 4d9s_A 154 GLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG 233 (406)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC
T ss_pred CCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC
Confidence 1111111 1336778887667777778899999996432210 00001111111112223444443
Q ss_pred CCCCeEEeecCCCcEEEeecccccc--------ceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc---
Q 018591 224 DDGKWVYGGGSDGFVMGWEGNVEIV--------RWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK--- 292 (353)
Q Consensus 224 ~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--- 292 (353)
..+.++-..+|.|+.|-....-. ...+..........+..++.-..+.++-..||.|+.|-.....+
T Consensus 234 --~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~ 311 (406)
T 4d9s_A 234 --WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 311 (406)
T ss_dssp --SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred --CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCC
Confidence 33445556788888886433110 00111111112234666766666667777899999997543221
Q ss_pred --------eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 293 --------LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 293 --------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
+..+.. .....|..++.... ..+.-..||.|..|-.....+
T Consensus 312 g~~~~~~~p~~v~~--~~~~~v~~va~G~~------hs~alt~~G~v~~wG~n~~Gq 360 (406)
T 4d9s_A 312 GNNLDQCSPVQVRF--PDDQKVVQVSCGWR------HTLAVTERNNVFAWGRGTNGQ 360 (406)
T ss_dssp SSSSCEEEEEEECC--GGGCCEEEEEECSS------EEEEEETTSCEEEEECCTTST
T ss_pred CCCCCCccCEEEec--cCCCcEEEEEeCCC------eEEEEeCCCCEEEecCCCCCc
Confidence 111211 12235777776644 444445789999997665433
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.36 E-value=2.6 Score=33.94 Aligned_cols=151 Identities=15% Similarity=0.048 Sum_probs=77.0
Q ss_pred CcceEEEEE-eCCeEEEEcC-CCcEEEEeCCCCCcccccce-eeeeccCCceeeEEEEcCC---CCeEEee---cCCCcE
Q 018591 168 DDAVNGLVA-SKGIVYSASA-DGKIKAWGKELGKSHCHSLK-GILEGHKDVSLNSVVVSDD---GKWVYGG---GSDGFV 238 (353)
Q Consensus 168 ~~~v~~i~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~---~~~l~~~---~~dg~i 238 (353)
-...+.|++ +++.++.+.. .|.|++++...+........ .......... ..++++|+ +..|+.. ..++.|
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gl-lGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGL-LGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSE-EEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCc-eeeEeccccccCCEEEEEEecCCCCEE
Confidence 345678888 5555665555 89999998665541100000 1112223344 89999995 3444432 234566
Q ss_pred EEeeccccc-----c--ceeeeee---ccccceeEEEEEEcCcEEEEecC-------------CCeEEEEecCCCc---c
Q 018591 239 MGWEGNVEI-----V--RWKLACE---TKAHEMAVLCVCLVGEFLCSGSA-------------DKSIGIWKREAFG---K 292 (353)
Q Consensus 239 ~i~d~~~~~-----~--~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~~-------------dg~i~iw~~~~~~---~ 292 (353)
.-|...... . ...+... ...|...-..+.++|.+.++.+. .|.|.-.+.+..- +
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 666655421 0 1111111 23455556677777876666432 3455445544210 0
Q ss_pred e---EEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 293 L---CRVGAITGHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 293 ~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
+ ..+. -.+|. ....++|+|+ +.+.++-
T Consensus 190 Pf~~~~i~-a~G~R-Np~Gla~dp~----G~L~~~d 219 (347)
T 3das_A 190 PFPGSPVY-SYGHR-NVQGLAWDDK----QRLFASE 219 (347)
T ss_dssp SSTTCCEE-EBCCS-BCCEEEECTT----CCEEEEE
T ss_pred CCCCCeEE-eeCCC-CcceEEECCC----CCEEEEe
Confidence 0 0111 12454 3567899997 6655543
No 343
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.80 E-value=3.2 Score=33.50 Aligned_cols=103 Identities=10% Similarity=0.091 Sum_probs=58.5
Q ss_pred CceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeecc---ccCcceEEEEEeCC-----eEEEEcCC------CcEEEE
Q 018591 129 DSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIK---AHDDAVNGLVASKG-----IVYSASAD------GKIKAW 193 (353)
Q Consensus 129 ~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~-----~l~~~~~d------g~i~iw 193 (353)
..-..++|.+ ..++++..+|.|++++-.+.+.+..+. ........|+++++ .++.+... +.|..+
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 3456899988 567777778999999822222222221 12456788999543 55554432 567788
Q ss_pred eCCCCCcc-cccceeeee---ccCCceeeEEEEcCCCCeEEee
Q 018591 194 GKELGKSH-CHSLKGILE---GHKDVSLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 194 d~~~~~~~-~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~ 232 (353)
+....... ...+...+. ...... ..++|.|+|.+.++.
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~-~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSG-GRIAFGPDGMLYVTT 152 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCC-CCEEECTTSCEEEEC
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCC-ceEEECCCCCEEEEE
Confidence 77643210 011111122 111223 689999999766654
No 344
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=92.69 E-value=3.7 Score=33.93 Aligned_cols=251 Identities=12% Similarity=0.091 Sum_probs=131.3
Q ss_pred ceEEEEECCcEEEEEeCC-CcEEEEeCCCc---------e--eeEEecc-CceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591 18 SVSSLALCGEFILSASQG-KDIIVWQQPDL---------R--MFTKFGH-GDGSVKAVVTVGNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 18 ~v~~~~~~~~~l~s~~~d-g~v~vwd~~~~---------~--~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~ 84 (353)
.|..|+......+.-..| +.|+.|-.... . ....+.. ....|..++.-..+.+....||.|..|-..
T Consensus 69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n 148 (406)
T 4d9s_A 69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN 148 (406)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCC
Confidence 677777765554444555 59999953221 0 1111111 223577777667777778899999999865
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce-----
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK----- 159 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~----- 159 (353)
...+.-. -..... . .+..+..-....|..++......++-..+|.|+.|-....-
T Consensus 149 ~~GqLG~-----g~~~~~----------~-----~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g 208 (406)
T 4d9s_A 149 QNGQLGL-----GDTEDS----------L-----VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG 208 (406)
T ss_dssp TTSTTCS-----SSCCCE----------E-----EEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred CCccCCC-----CCCCCc----------c-----cceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCC
Confidence 4321000 000000 0 00000001123577777766667777789999999643211
Q ss_pred ------eeeecc-ccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc------cccceeeeeccCCceeeEEEEcCCC
Q 018591 160 ------CLESIK-AHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH------CHSLKGILEGHKDVSLNSVVVSDDG 226 (353)
Q Consensus 160 ------~~~~~~-~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (353)
....+. .....|..++......++...+|.|+.|-.....+. .......+.......|..++.. .
T Consensus 209 ~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~ 286 (406)
T 4d9s_A 209 DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--W 286 (406)
T ss_dssp SSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--S
T ss_pred CCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--C
Confidence 011111 123467777776666677778999999965432110 0001111111122223444443 3
Q ss_pred CeEEeecCCCcEEEeeccccc--------cceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCC
Q 018591 227 KWVYGGGSDGFVMGWEGNVEI--------VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 227 ~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
.+.++-..||.|..|-....- ....+..........+..++.-..+.++-..+|.|+.|=....
T Consensus 287 ~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~ 358 (406)
T 4d9s_A 287 RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358 (406)
T ss_dssp SEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred CEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCC
Confidence 345555678888888543310 0011111111123457777776677777778999999976543
No 345
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.15 E-value=5.1 Score=32.33 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=38.5
Q ss_pred cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEc
Q 018591 269 VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWV 336 (353)
Q Consensus 269 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~ 336 (353)
++.++++....+.|...+++.++.......+......+..+++.|+ |.++++.. .+| +||.+
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd----G~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD----GYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT----SCEEEEECSTTE--EEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC----CcEEEEEeCCCC--EEEEE
Confidence 3677777777888888888754322111112223357999999999 87666533 455 44554
No 346
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.91 E-value=5.4 Score=32.18 Aligned_cols=107 Identities=12% Similarity=0.017 Sum_probs=53.9
Q ss_pred ceEEEEE-eCCe-EEEEcCCCcEEEEeCCCCCccc-ccceeeeeccCCceeeEEEEcCC---CCeEEeecC--------C
Q 018591 170 AVNGLVA-SKGI-VYSASADGKIKAWGKELGKSHC-HSLKGILEGHKDVSLNSVVVSDD---GKWVYGGGS--------D 235 (353)
Q Consensus 170 ~v~~i~~-~~~~-l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~--------d 235 (353)
....|++ +++. ++.+...|.|++++........ .............. ..++++|+ +..|+.... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~-~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGL-LDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSE-EEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCc-eeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 4578888 5556 7777788999998853221000 00001111122333 78999996 445544422 2
Q ss_pred CcEEEeecccccc----ceeeeeec-----cccceeEEEEEEcCcEEEEec
Q 018591 236 GFVMGWEGNVEIV----RWKLACET-----KAHEMAVLCVCLVGEFLCSGS 277 (353)
Q Consensus 236 g~i~i~d~~~~~~----~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~ 277 (353)
..|..|+...... ...+...+ ..|...-..+.++|.+.++-+
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 3566666543210 11111111 234455567777886665543
No 347
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=90.77 E-value=1.6 Score=38.78 Aligned_cols=71 Identities=8% Similarity=0.187 Sum_probs=47.3
Q ss_pred CceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCce-------------eeEEEEEeCCEEEE--ecCCCcEEEE
Q 018591 17 GSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDG-------------SVKAVVTVGNKVFT--AHQDSRIRVW 81 (353)
Q Consensus 17 ~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-------------~v~~~~~~~~~l~s--~~~dg~i~~w 81 (353)
..|.++.++..++++-+.|.++|+||+.+++++.+..-... +-.-+..-+.++++ -..+|..++|
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~ 301 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMG 301 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEE
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEE
Confidence 46888888889999999999999999999998877643111 10111112444442 2356788999
Q ss_pred EcccCc
Q 018591 82 KVSRSS 87 (353)
Q Consensus 82 ~~~~~~ 87 (353)
.+....
T Consensus 302 ~l~~~~ 307 (729)
T 3f7f_A 302 TLLVDS 307 (729)
T ss_dssp EEEC--
T ss_pred EEEEcC
Confidence 886543
No 348
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=90.62 E-value=5.8 Score=32.04 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=35.4
Q ss_pred cCcEEEEecCCCeEEEEecCCCcceEEecc-ccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591 269 VGEFLCSGSADKSIGIWKREAFGKLCRVGA-ITGHEGPVKCLQASPNAVGGGFLLYSGS 326 (353)
Q Consensus 269 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~l~s~~ 326 (353)
+|.++++....+.|...++........... +.+....+..+++.|| |.++++..
T Consensus 276 ~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD----G~lyv~~~ 330 (354)
T 3a9g_A 276 RGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD----GGILISTS 330 (354)
T ss_dssp TTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT----SCEEEEEC
T ss_pred CCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC----CcEEEEEe
Confidence 477777777788899888875432211112 2233457899999999 87766654
No 349
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=90.45 E-value=7.2 Score=32.82 Aligned_cols=105 Identities=12% Similarity=0.101 Sum_probs=53.7
Q ss_pred cceEEEEE-eCCeEEEEcCCC-cEEEEeCCCCCcccccceeeeec------cCCceeeEEEEcCC---CCeEEeecC---
Q 018591 169 DAVNGLVA-SKGIVYSASADG-KIKAWGKELGKSHCHSLKGILEG------HKDVSLNSVVVSDD---GKWVYGGGS--- 234 (353)
Q Consensus 169 ~~v~~i~~-~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~~~--- 234 (353)
...+.|++ +++.++++...+ .|++++..++... ....+.. ..... ..++|+|+ +..|+....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~---~~~~~~~~~~~~~g~~Gl-lgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK---TVFQVPEIVNDADGQNGL-LGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECTTCCCCTTSSCSE-EEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe---EEecCCccccccCCCCce-eEEEECCCcCcCCEEEEEEeccc
Confidence 34568888 555666666665 6888876554411 1111111 12333 78999995 555554432
Q ss_pred ----------CCcEEEeecccccc----ceeeeee---ccccceeEEEEEEcCcEEEEec
Q 018591 235 ----------DGFVMGWEGNVEIV----RWKLACE---TKAHEMAVLCVCLVGEFLCSGS 277 (353)
Q Consensus 235 ----------dg~i~i~d~~~~~~----~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~ 277 (353)
...|..|+...... ...+... ...|...-+.+.++|.+.++.+
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23455565533210 0111111 1235556666667787666544
No 350
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=90.13 E-value=7.9 Score=32.78 Aligned_cols=254 Identities=12% Similarity=0.099 Sum_probs=132.4
Q ss_pred CceEEEEECCcEEEEEeCCCcEEEEeCCCc-ee---------------------------------eEEecc-------C
Q 018591 17 GSVSSLALCGEFILSASQGKDIIVWQQPDL-RM---------------------------------FTKFGH-------G 55 (353)
Q Consensus 17 ~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~-~~---------------------------------~~~~~~-------~ 55 (353)
..|..|+.-+...+.-..||.|..|-.... ++ ...+.. .
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 468888887777777778999999954221 00 011111 1
Q ss_pred ceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE
Q 018591 56 DGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT 135 (353)
Q Consensus 56 ~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 135 (353)
...|..++......+....+|.|..|-....... .+......... ...+..+-.-....|..++
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~G---qLG~~~~~~~~-------------~~~P~~v~~l~~~~i~~va 210 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEG---ILGFYQDKIKI-------------QKTPWKVPTFSKYNIVQLA 210 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTE---EEESBTTTBSC-------------EEEEEECCCCCSSCEEEEE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCC---ccCCCCCCCcc-------------ccCcEEccccCCCCEEEEE
Confidence 2456777766777777788999999986311100 00000000000 0000000001123577787
Q ss_pred EeCCeEEEecCCCcEEEEEcCCceeee----------ecc---ccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc-
Q 018591 136 VYNGLIYSGSWDKTLKVWRVADLKCLE----------SIK---AHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH- 201 (353)
Q Consensus 136 ~~~~~l~~~~~dg~v~iwd~~~~~~~~----------~~~---~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~- 201 (353)
......++-..+|.|+.|-....-.+. .+. .....|..++......++...+|.|+.|-.....+.
T Consensus 211 ~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG 290 (473)
T 3of7_A 211 PGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCG 290 (473)
T ss_dssp ECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTC
T ss_pred ecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcC
Confidence 777777777889999999754321110 000 011457777776666677778999999964322100
Q ss_pred ---------cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc---------------------ee
Q 018591 202 ---------CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR---------------------WK 251 (353)
Q Consensus 202 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------------------~~ 251 (353)
.......+.......|..++... ...++-..+|.|..|-....-.. ..
T Consensus 291 ~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~ 368 (473)
T 3of7_A 291 VSEDVEDGALVTKPKRLALPDNVVIRSIAAGE--HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVP 368 (473)
T ss_dssp CCSCCCTTCEEEEEEECCCCTTCCEEEEEECS--SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEE
T ss_pred CCCcccCCceeeccccccccCCccEEEEEeCC--CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeec
Confidence 00001111111122234555433 34444467888888864321000 00
Q ss_pred eeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCC
Q 018591 252 LACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 252 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~ 289 (353)
....+.. ...+..++.-..+.++-..+|.|+.|=...
T Consensus 369 ~P~~v~~-~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 369 LPTKLNN-VPKFKSVAAGSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp EEEECCS-SCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred cCcccCC-CCceEEEEeCCCeEEEEeCCCcEEEeeCCC
Confidence 0111111 115667776666667778899999997654
No 351
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=88.00 E-value=11 Score=31.69 Aligned_cols=107 Identities=9% Similarity=0.100 Sum_probs=57.1
Q ss_pred CceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc------ccceeEEEEEEc-----CcEEEEecC----
Q 018591 214 DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK------AHEMAVLCVCLV-----GEFLCSGSA---- 278 (353)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~v~~~~~~-----~~~l~~~~~---- 278 (353)
..+ ..++|.|+|+++++-...+.|++++...+.. .....+. ........++++ +..|.....
T Consensus 27 ~~P-~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~--~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 27 NKP-HALLWGPDNQIWLTERATGKILRVNPESGSV--KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SSE-EEEEECTTSCEEEEETTTCEEEEECTTTCCE--EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCc-eEEEEcCCCcEEEEEcCCCEEEEEECCCCcE--eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 344 8999999999777765555788887654321 1111111 123344555554 444444332
Q ss_pred ---------CCeEEEEecCCCc----ceEEec-ccc-CCCcCeEEEEeecCCCCCCeEEEEccC
Q 018591 279 ---------DKSIGIWKREAFG----KLCRVG-AIT-GHEGPVKCLQASPNAVGGGFLLYSGSL 327 (353)
Q Consensus 279 ---------dg~i~iw~~~~~~----~~~~~~-~~~-~h~~~v~~~~~~~~~~~~~~~l~s~~~ 327 (353)
...|.-|+..... ....+. .+. ........|+|.|| |.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pD----G~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD----QKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT----SCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCC----CeEEEEECC
Confidence 2356666654321 111221 121 12235789999999 887776553
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.29 E-value=17 Score=31.50 Aligned_cols=72 Identities=15% Similarity=0.014 Sum_probs=45.9
Q ss_pred eEEEEcCCCCeEEeec-CCCcEEEeecccccc---------ceeeeeeccccc-eeEEEEEEcCcEEEEecCCCeEEEEe
Q 018591 218 NSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIV---------RWKLACETKAHE-MAVLCVCLVGEFLCSGSADKSIGIWK 286 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---------~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~dg~i~iw~ 286 (353)
..+.++|||+++++++ .+.++.++|++.-.. ......+..... ..-+.+..+|.-..+-.-|..|..|+
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 7899999999987765 578999999885311 111111222111 12234444476666777899999999
Q ss_pred cCC
Q 018591 287 REA 289 (353)
Q Consensus 287 ~~~ 289 (353)
+..
T Consensus 406 i~~ 408 (638)
T 3sbq_A 406 MEE 408 (638)
T ss_dssp HHH
T ss_pred ccH
Confidence 875
No 353
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=83.82 E-value=17 Score=30.00 Aligned_cols=252 Identities=9% Similarity=0.025 Sum_probs=133.1
Q ss_pred eeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE
Q 018591 57 GSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV 136 (353)
Q Consensus 57 ~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 136 (353)
..|..++.-..+.+....||.|..|-.....+.-.... .... ...+..+ .-...|..++.
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~---~~~~---------------~~~P~~v--~l~~~i~~va~ 118 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTS---VEGS---------------EMVPGKV--ELQEKVVQVSA 118 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCC---STTG---------------GGSCEEC--CCCSCEEEEEE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCC---CCcc---------------ccCCeEe--cCCCcEEEEec
Confidence 45777776677777778899999998654321000000 0000 0000111 11236777777
Q ss_pred eCCeEEEecCCCcEEEEEc--CC-ce------------eeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc
Q 018591 137 YNGLIYSGSWDKTLKVWRV--AD-LK------------CLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH 201 (353)
Q Consensus 137 ~~~~l~~~~~dg~v~iwd~--~~-~~------------~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~ 201 (353)
.....++-..||.|+.|-. +. ++ +... .....|..++.-....+.-..||.|..|-.....+.
T Consensus 119 G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqL 196 (413)
T 1a12_A 119 GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 196 (413)
T ss_dssp CSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred CCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCcc
Confidence 6666777788999999974 21 11 1111 123567777776667777778999999965432110
Q ss_pred -c-----------------ccceeeeecc-----CCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc----------
Q 018591 202 -C-----------------HSLKGILEGH-----KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV---------- 248 (353)
Q Consensus 202 -~-----------------~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------- 248 (353)
. ..+ ...... ....|..++.... +.++-..+|.|+.|-....-.
T Consensus 197 G~~~~~~~~~~~~~~~~~~~~P-~~v~~~~~g~~~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~ 273 (413)
T 1a12_A 197 GRVPELFANRGGRQGLERLLVP-KCVMLKSRGSRGHVRFQDAFCGAY--FTFAISHEGHVYGFGLSNYHQLGTPGTESCF 273 (413)
T ss_dssp CSCGGGTSSSCGGGGHHHHHSC-EECCCBCSSCCSBCCEEEEEEETT--EEEEEETTCCEEEEECCTTSTTSCSSCSCEE
T ss_pred CCCccccccccccccccccccC-ceEeeccccccCCccEEEEEeCCC--EEEEEeCCCCEEEEeCCCCcCCCCCCCCccc
Confidence 0 001 001110 1122355555433 444455788898886543100
Q ss_pred ceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc---------eEEeccccCCCcCeEEEEeecCCCCCC
Q 018591 249 RWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK---------LCRVGAITGHEGPVKCLQASPNAVGGG 319 (353)
Q Consensus 249 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~ 319 (353)
....+..+......+..++....+.++-..||.|+.|-.....+ ......+.. ...|..++....
T Consensus 274 ~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G~~----- 347 (413)
T 1a12_A 274 IPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACGAS----- 347 (413)
T ss_dssp EEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEECSS-----
T ss_pred ccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEECcc-----
Confidence 01111111211234777777666667777899999997543211 001111111 126777777654
Q ss_pred eEEEEccCCCeEEEEEcCCCC
Q 018591 320 FLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 320 ~~l~s~~~dg~i~iw~~~~~~ 340 (353)
..+.-..||.|..|-.....
T Consensus 348 -hs~alt~~G~v~~wG~n~~g 367 (413)
T 1a12_A 348 -VGYAVTKDGRVFAWGMGTNY 367 (413)
T ss_dssp -EEEEEETTSCEEEEECCTTS
T ss_pred -eEEEEeCCCCEEEecCCCCC
Confidence 44444578999999766543
No 354
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=83.79 E-value=17 Score=29.99 Aligned_cols=248 Identities=12% Similarity=0.044 Sum_probs=133.1
Q ss_pred CceEEEEECCcEEEEEeCCCcEEEEeCCC-ce------------eeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEc
Q 018591 17 GSVSSLALCGEFILSASQGKDIIVWQQPD-LR------------MFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 17 ~~v~~~~~~~~~l~s~~~dg~v~vwd~~~-~~------------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~ 83 (353)
..|..|+......+.-..||.|..|-... ++ ....+.. ...|..++.-....+....||.|..|-.
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~~~i~~va~G~~hs~alt~~G~v~~wG~ 137 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-QEKVVQVSAGDSHTAALTDDGRVFLWGS 137 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-CSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-CCcEEEEecCCCeEEEEcCCCcEEEeeC
Confidence 56777777666666777899999996432 11 0111111 2367777666777777888999999975
Q ss_pred --ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceee
Q 018591 84 --SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCL 161 (353)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 161 (353)
+... .+........ ...+..+ .....|..++.-....++-..||.|+.|-....-.+
T Consensus 138 ~~n~~G-----qlG~~~~~~~--------------~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqL 196 (413)
T 1a12_A 138 FRDNNG-----VIGLLEPMKK--------------SMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 196 (413)
T ss_dssp EEETTE-----EEESSBBTBC--------------EEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred CcCCCC-----ccCcCCcccc--------------ccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCcc
Confidence 2211 0100000000 0001111 123467777777766777778999999975431100
Q ss_pred ----------------------eeccc------cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc------ccccee
Q 018591 162 ----------------------ESIKA------HDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH------CHSLKG 207 (353)
Q Consensus 162 ----------------------~~~~~------~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~ 207 (353)
..+.. ....|..++......++...+|.|+.|-.....+. ......
T Consensus 197 G~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~ 276 (413)
T 1a12_A 197 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQ 276 (413)
T ss_dssp CSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEE
T ss_pred CCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccE
Confidence 00110 23457777776666666678999999965432110 000001
Q ss_pred eeeccCC--ceeeEEEEcCCCCeEEeecCCCcEEEeecccccc--------ceeeeeeccccceeEEEEEEcCcEEEEec
Q 018591 208 ILEGHKD--VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV--------RWKLACETKAHEMAVLCVCLVGEFLCSGS 277 (353)
Q Consensus 208 ~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 277 (353)
.+..... ..|..++.. ..+.++-..+|.|+.|-....-. .......... ...+..++.-..+.++-.
T Consensus 277 ~v~~l~~~~~~v~~ia~G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G~~hs~alt 353 (413)
T 1a12_A 277 NLTSFKNSTKSWVGFSGG--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACGASVGYAVT 353 (413)
T ss_dssp ECGGGCCTTCCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEECSSEEEEEE
T ss_pred EchhccCCCceEEEEecc--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEECcceEEEEe
Confidence 1111111 113444443 33445556788899986543100 0011111111 125777777667777777
Q ss_pred CCCeEEEEecCC
Q 018591 278 ADKSIGIWKREA 289 (353)
Q Consensus 278 ~dg~i~iw~~~~ 289 (353)
.||.|+.|-...
T Consensus 354 ~~G~v~~wG~n~ 365 (413)
T 1a12_A 354 KDGRVFAWGMGT 365 (413)
T ss_dssp TTSCEEEEECCT
T ss_pred CCCCEEEecCCC
Confidence 899999997654
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.96 E-value=34 Score=32.08 Aligned_cols=37 Identities=19% Similarity=0.065 Sum_probs=31.3
Q ss_pred CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 305 ~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
.+.+++..++ ..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~----~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLST----YNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETT----TTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCC----CcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677777777 789999999999999999999877653
No 356
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.94 E-value=21 Score=29.10 Aligned_cols=129 Identities=9% Similarity=0.008 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCcEEEEeCCC-CCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCC----cEEEeecccccccee
Q 018591 178 KGIVYSASADGKIKAWGKEL-GKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDG----FVMGWEGNVEIVRWK 251 (353)
Q Consensus 178 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~i~d~~~~~~~~~ 251 (353)
++.|++++..| +.+++... +. . -...........+.++++.| +...+.++...| .|... ..+-..+.
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~-~---W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~ 94 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARR-T---WELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWT 94 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSC-S---EEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCE
T ss_pred CCEEEEEecCc-eEEEECCCCCC-C---ceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCce
Confidence 44777777766 55555432 21 0 11110112234469999998 333444454444 34333 22212233
Q ss_pred eeee---ccc--------cceeEEEEEEc----CcEEEEecCCCeEEEEecCCCcceEEeccccC---------------
Q 018591 252 LACE---TKA--------HEMAVLCVCLV----GEFLCSGSADKSIGIWKREAFGKLCRVGAITG--------------- 301 (353)
Q Consensus 252 ~~~~---~~~--------~~~~v~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------------- 301 (353)
.... +.. ....+.++.++ ...+.++...+.|...+ +.++....+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~ 173 (394)
T 3b7f_A 95 EATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGT 173 (394)
T ss_dssp ECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred ECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCC
Confidence 2221 111 11246566654 56666666666555443 22333334432211
Q ss_pred -CCcCeEEEEeecC
Q 018591 302 -HEGPVKCLQASPN 314 (353)
Q Consensus 302 -h~~~v~~~~~~~~ 314 (353)
....+.+|.++|.
T Consensus 174 ~~~~~i~~i~~d~~ 187 (394)
T 3b7f_A 174 PDGPKMHSILVDPR 187 (394)
T ss_dssp CCCCEEEEEEECTT
T ss_pred CCCCceeEEEECCC
Confidence 2235789999874
No 357
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=80.14 E-value=23 Score=28.96 Aligned_cols=251 Identities=8% Similarity=0.024 Sum_probs=128.6
Q ss_pred ceEEEEECCcEEEEEeCCCcEEEEeCCCc-----------eeeEEecc-CceeeEEEEEe--CCEEEEecCCCcEEEEEc
Q 018591 18 SVSSLALCGEFILSASQGKDIIVWQQPDL-----------RMFTKFGH-GDGSVKAVVTV--GNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 18 ~v~~~~~~~~~l~s~~~dg~v~vwd~~~~-----------~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~ 83 (353)
.|..|+......+.-..||.|..|-.... .....+.. ....+..+... ....+....||.|..|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 45556555666666778999999963321 11112221 12234444554 567777788999999976
Q ss_pred ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCc-----
Q 018591 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADL----- 158 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~----- 158 (353)
....+.- .-... .. ..+..+-.-....|..++......++-..||.|+.|-....
T Consensus 134 n~~GqLG-----~g~~~-~~--------------~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~ 193 (389)
T 3kci_A 134 AEDGKLG-----HGNRS-PC--------------DRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGH 193 (389)
T ss_dssp CGGGTTC-----SSSCC-CE--------------EEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCCCcCC-----CCCCc-cC--------------cCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCC
Confidence 5422100 00000 00 00000000112357777776666677778999999975431
Q ss_pred -------eeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCc------ccccceeeeeccCCceeeEEEEc
Q 018591 159 -------KCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKS------HCHSLKGILEGHKDVSLNSVVVS 223 (353)
Q Consensus 159 -------~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~ 223 (353)
.+...-......|..++.. ....+....||.|..|-.....+ ................|..++..
T Consensus 194 ~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G 273 (389)
T 3kci_A 194 SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG 273 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE
T ss_pred CCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC
Confidence 1111111123457777763 35666777899999995432110 00001111111122123445444
Q ss_pred CCCCeEEeecCCCcEEEeeccccc--------cceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCC
Q 018591 224 DDGKWVYGGGSDGFVMGWEGNVEI--------VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 224 ~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
. .+.++-..+|.|..|-....- ....+..........+..++....+.++-..||.|+.|-....
T Consensus 274 ~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 274 S--QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp T--TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTT
T ss_pred C--CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCC
Confidence 3 344555678889998654311 0011111111122456777776677777788999999976543
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.88 E-value=26 Score=29.52 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=21.6
Q ss_pred eEEEEcCCCC-eEEeecCCCcEEEeecc
Q 018591 218 NSVVVSDDGK-WVYGGGSDGFVMGWEGN 244 (353)
Q Consensus 218 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 244 (353)
..|+|.|++. .++++...|.|++++..
T Consensus 17 ~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 17 VGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp EEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred eEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 8999999986 45566678999999754
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.29 E-value=29 Score=32.56 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=29.1
Q ss_pred ceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeec
Q 018591 130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~ 164 (353)
.+.++...+ .++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 456666665 68999999999999999999988764
No 360
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=77.52 E-value=10 Score=33.84 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=31.6
Q ss_pred CceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591 129 DSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 129 ~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 166 (353)
..|.++.+...++++-+.|..+|+||+.+++++....-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45777777668999999999999999999998876543
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.29 E-value=53 Score=31.58 Aligned_cols=37 Identities=19% Similarity=0.065 Sum_probs=29.7
Q ss_pred CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 305 ~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
.+.+++..++ ..++++-+.|+++|+|++.+++++.+.
T Consensus 239 ~~vs~~~~~~----~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLST----YNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETT----TTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCC----ccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3455566666 789999999999999999999877653
No 362
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=72.40 E-value=43 Score=28.25 Aligned_cols=201 Identities=9% Similarity=0.022 Sum_probs=107.8
Q ss_pred CCceEEEEEeCCeEEEecCCCcEEEEEcC---Ccee------------eeeccc-cCcceEEEEEeCCeEEEEcCCCcEE
Q 018591 128 ADSISCLTVYNGLIYSGSWDKTLKVWRVA---DLKC------------LESIKA-HDDAVNGLVASKGIVYSASADGKIK 191 (353)
Q Consensus 128 ~~~i~~~~~~~~~l~~~~~dg~v~iwd~~---~~~~------------~~~~~~-~~~~v~~i~~~~~~l~~~~~dg~i~ 191 (353)
...|..++......++-..||.|+.|-.. .++. ...+.. ....|..++......++...+|.|.
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~ 226 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEE
Confidence 35677888777667777889999999751 1111 011111 1235888887777777778899999
Q ss_pred EEeCCCCCcccc---------cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc------------ce
Q 018591 192 AWGKELGKSHCH---------SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV------------RW 250 (353)
Q Consensus 192 iwd~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~ 250 (353)
.|-.....+.-. ...... ... ..|..++.. ....++-..+|.|..|-....-. ..
T Consensus 227 ~wG~n~~GqLG~~~~~~~~~~~~~p~~-~~~-~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~ 302 (473)
T 3of7_A 227 AWGNGQQNQLGRKVMERFRLKTLDPRP-FGL-RHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVT 302 (473)
T ss_dssp EEECCTTSTTSSCCCGGGTTTTCSCEE-CSC-CSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEE
T ss_pred EEeCCCCCCCCCCccccccccccCcee-cCC-cceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceee
Confidence 996543211000 000000 000 123455444 33455556788888886432100 00
Q ss_pred eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceE----------------------EeccccCCCcCeEE
Q 018591 251 KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLC----------------------RVGAITGHEGPVKC 308 (353)
Q Consensus 251 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----------------------~~~~~~~h~~~v~~ 308 (353)
.+..........+..++....+-++-..+|.|+.|-.....++- ....+.+ ...|..
T Consensus 303 ~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~-~~~v~~ 381 (473)
T 3of7_A 303 KPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN-VPKFKS 381 (473)
T ss_dssp EEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS-SCCEEE
T ss_pred ccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC-CCceEE
Confidence 11111111124567777766666666789999999754322110 0011111 115777
Q ss_pred EEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 309 LQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 309 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
|+.... ..+.-..||.|..|-....
T Consensus 382 Ia~G~~------hs~al~~~G~vy~wG~n~~ 406 (473)
T 3of7_A 382 VAAGSH------HSVAVAQNGIAYSWGFGET 406 (473)
T ss_dssp EEECSS------EEEEEETTSCEEEEECCTT
T ss_pred EEeCCC------eEEEEeCCCcEEEeeCCCC
Confidence 776644 3444467999999976653
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=67.41 E-value=50 Score=26.98 Aligned_cols=171 Identities=9% Similarity=0.070 Sum_probs=90.2
Q ss_pred CcEEEEEcCCc--eeeeecccc------CcceEEEEEe---------CCeE-EEEcCCCcEEEEeCCCCCccccc-----
Q 018591 148 KTLKVWRVADL--KCLESIKAH------DDAVNGLVAS---------KGIV-YSASADGKIKAWGKELGKSHCHS----- 204 (353)
Q Consensus 148 g~v~iwd~~~~--~~~~~~~~~------~~~v~~i~~~---------~~~l-~~~~~dg~i~iwd~~~~~~~~~~----- 204 (353)
-.|.+||+.+. +.++++.-. ...+..+.+. +.++ ++=+..+.|.++|+.+++.....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36889999998 888776432 3457777775 2233 33345778999999988631111
Q ss_pred c--ee--eeeccC---CceeeEEEEcCC----CCeEEeecCCCcEEEeecccccc-------ceeeeeeccc--cceeEE
Q 018591 205 L--KG--ILEGHK---DVSLNSVVVSDD----GKWVYGGGSDGFVMGWEGNVEIV-------RWKLACETKA--HEMAVL 264 (353)
Q Consensus 205 ~--~~--~~~~~~---~~~v~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~--~~~~v~ 264 (353)
+ .. ...+.. ..-+..++++|+ ++.|.-....+ -++|.+.+... ..+.... ++ ......
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceE
Confidence 0 00 000100 112478889987 66666554443 34454433211 0111111 11 112223
Q ss_pred EEE-EcCcEEEEecCCCeEEEEecCC-C---cceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 265 CVC-LVGEFLCSGSADKSIGIWKREA-F---GKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 265 ~~~-~~~~~l~~~~~dg~i~iw~~~~-~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
.+. .+|.++++--..+.|..|+... . +....+..-. .-..+..+.+.++ +.+.+..
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~----g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSK----GGLWFMS 341 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTT----SCEEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCC----CeEEEEE
Confidence 343 3477777778889999999875 1 1222222211 2235677777666 5554444
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.38 E-value=34 Score=32.87 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.6
Q ss_pred EEEEEeC--CeEEEecCCCcEEEEEcCCceeeeec
Q 018591 132 SCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 132 ~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~ 164 (353)
.++...+ .++++-+.|+++|+|++.+++++.+.
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3344444 78899999999999999999988764
No 365
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=62.17 E-value=60 Score=26.09 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=35.5
Q ss_pred EEEEEE-cCcEEEEecCCCeEEEEecCCCcce-EEeccccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591 263 VLCVCL-VGEFLCSGSADKSIGIWKREAFGKL-CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS 326 (353)
Q Consensus 263 v~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~ 326 (353)
...+.+ .+.++...-..+.|....+...+.. .....+.+..+.+.+++..|| |.++++.+
T Consensus 265 p~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD----G~lyv~td 326 (347)
T 3das_A 265 PSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG----DKLWLVTS 326 (347)
T ss_dssp EEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET----TEEEEEEC
T ss_pred CcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC----CcEEEEEc
Confidence 344444 4666666666667766666544210 011123344578999999999 87766643
No 366
>2z5e_A Proteasome assembling chaperone 3; beta sandwich, homodimer; 2.00A {Homo sapiens}
Probab=59.74 E-value=8.8 Score=25.28 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=28.5
Q ss_pred CCCCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEE
Q 018591 2 PCKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVW 41 (353)
Q Consensus 2 ~~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vw 41 (353)
|.++.+....+.|+.-.|.+..|+++.+++.+..|++--|
T Consensus 6 pv~~kq~s~~I~Gv~Tevv~~~FsD~ilV~VTQ~Gk~Gt~ 45 (122)
T 2z5e_A 6 LVISKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTL 45 (122)
T ss_dssp SSCEEEEEEEETTEEEEEEEEECSSEEEEEEESTTCCCEE
T ss_pred CcceeEEEEEECCeeeEEEEEecCCEEEEEEEeCCeeeEE
Confidence 4455666667777777788888888888888887764443
No 367
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=59.44 E-value=61 Score=28.25 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=26.8
Q ss_pred cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee
Q 018591 189 KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 232 (353)
.+..++..+++ +...+.......++.++|+||++.|++.
T Consensus 510 ~v~~~dp~tGe-----l~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 510 QMLCADPATGE-----IRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCC-----EEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCe-----EEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 56666666665 5555554444445999999999988765
No 368
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=51.11 E-value=1.3e+02 Score=26.41 Aligned_cols=65 Identities=9% Similarity=-0.050 Sum_probs=42.1
Q ss_pred eEEEEcCCCcEEEEeCCCCCc-------cccc-ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591 180 IVYSASADGKIKAWGKELGKS-------HCHS-LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~-------~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 246 (353)
.++++-.+.++.++|++.... .... .....+ -...+ ...+|.++|.-..+-.-|..|.-|++...
T Consensus 337 i~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGP-lHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 337 FIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGP-LHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCE-EEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred EEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcc-cEEEECCCCceEeeeeecceEEEEeccHH
Confidence 455566688999999874211 0001 111222 22334 88999999966667778999999998764
No 369
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=46.10 E-value=1.3e+02 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=20.1
Q ss_pred cceEEEEE-eCC--eEEEEcCCCcEEEEeCC
Q 018591 169 DAVNGLVA-SKG--IVYSASADGKIKAWGKE 196 (353)
Q Consensus 169 ~~v~~i~~-~~~--~l~~~~~dg~i~iwd~~ 196 (353)
...+.|++ +++ .++++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 34567888 444 37777888999999754
No 370
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=42.91 E-value=1.4e+02 Score=24.56 Aligned_cols=247 Identities=9% Similarity=-0.068 Sum_probs=130.9
Q ss_pred ceEEEEECCcEEEEEeCCCcEEEEeCCC-ce------------eeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEc-
Q 018591 18 SVSSLALCGEFILSASQGKDIIVWQQPD-LR------------MFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKV- 83 (353)
Q Consensus 18 ~v~~~~~~~~~l~s~~~dg~v~vwd~~~-~~------------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~- 83 (353)
.|..|+..+...+.-..||.|..|-... ++ ....+. ....|..++....+.+....||.|..|-.
T Consensus 76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~wG~~ 154 (423)
T 3mvd_K 76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFAWGSF 154 (423)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEEeCC
Confidence 4777777777777778899999996432 11 111111 12356677666777777788999999986
Q ss_pred -ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce---
Q 018591 84 -SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK--- 159 (353)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~--- 159 (353)
.... .+........ . .+.. ......|..++......++-..+|.|+.|-....-
T Consensus 155 ~n~~G-----qlG~~~~~~~----------~-----~p~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG 212 (423)
T 3mvd_K 155 RDSHG-----NMGLTIDGNK----------R-----TPID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLG 212 (423)
T ss_dssp ECSSS-----EEESBTTBCE----------E-----EEEE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTS
T ss_pred CCCCC-----CcCcCCCCCC----------c-----eeeE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccC
Confidence 2221 0000000000 0 0000 12334677777777777777889999999643211
Q ss_pred --------------------eeeeccccCcceEEEEEeCCe-EEEEcCCCcEEEEeCCCCCccc------ccceeeeecc
Q 018591 160 --------------------CLESIKAHDDAVNGLVASKGI-VYSASADGKIKAWGKELGKSHC------HSLKGILEGH 212 (353)
Q Consensus 160 --------------------~~~~~~~~~~~v~~i~~~~~~-l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~ 212 (353)
+..........|..++..... ++.-..+|.|..|-.....+.- ..........
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~ 292 (423)
T 3mvd_K 213 RLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE 292 (423)
T ss_dssp SCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC
T ss_pred CCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC
Confidence 111111123456666664443 3333689999999654321000 0000000111
Q ss_pred CCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc--------ceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEE
Q 018591 213 KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV--------RWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGI 284 (353)
Q Consensus 213 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i 284 (353)
... |..++.. ..+.++-..+|.|..|-....-. ..............+..++.-..+.++-..||.|+.
T Consensus 293 ~~~-v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~ 369 (423)
T 3mvd_K 293 LKD-IRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYS 369 (423)
T ss_dssp CCS-EEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CCC-eEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEE
Confidence 112 2444443 33455556788899886433100 001111122222267777776666666688999999
Q ss_pred EecCCC
Q 018591 285 WKREAF 290 (353)
Q Consensus 285 w~~~~~ 290 (353)
|=....
T Consensus 370 wG~n~~ 375 (423)
T 3mvd_K 370 WGSGVN 375 (423)
T ss_dssp EECCTT
T ss_pred ECCCCC
Confidence 976543
No 371
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.72 E-value=1.1e+02 Score=26.88 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=29.2
Q ss_pred cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee
Q 018591 189 KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 232 (353)
.+.+.+..+++ +.+.+..+.+..++.++|+||++.|++.
T Consensus 510 ~~~~~~~~~g~-----~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 510 QMLCADPATGE-----IRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCC-----EEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCe-----EEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35555666665 6677777777778999999999887764
No 372
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=41.39 E-value=1.4e+02 Score=24.15 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=27.7
Q ss_pred CcEEEEEeCCCcEEEEeCCC-ceeeEEe--ccCceeeEEEEEe---CCEEEEecCCC
Q 018591 26 GEFILSASQGKDIIVWQQPD-LRMFTKF--GHGDGSVKAVVTV---GNKVFTAHQDS 76 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~-~~~~~~~--~~~~~~v~~~~~~---~~~l~s~~~dg 76 (353)
...|+.|...| +.+.+... ++....+ ......|.+|+++ .+.++.+...|
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 44677777777 55554332 2222222 1224578999987 45666666555
No 373
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=40.27 E-value=88 Score=26.68 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=36.7
Q ss_pred EEEEecCCCeEEEEecCCCcc-----eEEecccc--CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEE
Q 018591 272 FLCSGSADKSIGIWKREAFGK-----LCRVGAIT--GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV 333 (353)
Q Consensus 272 ~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~i 333 (353)
.++.|..+|.|.-.-+..... ...+.++. ....+|..|.++++ ..+|+.++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~----~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTK----QQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETT----TTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCC----CCEEEEEECCeEEEE
Confidence 577899999876544332110 11111222 23578999999998 889999998876654
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=40.09 E-value=1.3e+02 Score=23.21 Aligned_cols=205 Identities=10% Similarity=0.060 Sum_probs=104.1
Q ss_pred eeeeCcc---CceEEEEE--CCcEEEEEeCCCcEEEE---eCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcE
Q 018591 10 AVLSGHV---GSVSSLAL--CGEFILSASQGKDIIVW---QQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRI 78 (353)
Q Consensus 10 ~~l~~h~---~~v~~~~~--~~~~l~s~~~dg~v~vw---d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i 78 (353)
+..+||. +.+..+.. +.++|+.-+.+|.++-- +++.+.....+.. ...|.++... +..++..+.+|.+
T Consensus 14 r~~~g~~~~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~-~e~i~~v~~~~~~~~~~v~~T~~G~i 92 (276)
T 3no0_A 14 IPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSR-EEKIVGAFIREKFGNRLLLATKKGYV 92 (276)
T ss_dssp EEGGGCCSSCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSST-TCCEEEEEEGGGSCSEEEEEETTSEE
T ss_pred eeccCCCCCCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCC-CCEEEEEECCcCCCCEEEEEeCCCEE
Confidence 3445553 35555544 25566666777876653 3333221111332 4455555333 4689999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEe-C-CeEEEecCCCcEEEEEcC
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY-N-GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~l~~~~~dg~v~iwd~~ 156 (353)
+-..+..-. ....-...+. + ...+.+..+... . +.++..+..|.+..++..
T Consensus 93 Kr~~l~~~~-~~~~G~~~i~-------------------------l-kegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 93 KKIPLAEFE-YKAQGMPIIK-------------------------L-TEGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp EEEEGGGTT-TCSTTEECSC-------------------------C-CTTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred EEEEHHHhh-hhcCCeEEEe-------------------------c-CCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 998876532 0000000000 0 122334333333 3 678888888998888764
Q ss_pred C---------ceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccccc--ceeeeeccCCceeeEEEEc
Q 018591 157 D---------LKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHS--LKGILEGHKDVSLNSVVVS 223 (353)
Q Consensus 157 ~---------~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~ 223 (353)
. |.....+.. ...|.++.. .+..++..+..|.++...+..-...... -...+ ...+..+.....
T Consensus 146 eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~- 222 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI- 222 (276)
T ss_dssp GSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE-
T ss_pred hCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe-
Confidence 3 112222332 345555554 3448888899999988876543211000 01111 222333222223
Q ss_pred CCCCeEEeecCCCcEEE--eeccc
Q 018591 224 DDGKWVYGGGSDGFVMG--WEGNV 245 (353)
Q Consensus 224 ~~~~~l~~~~~dg~i~i--~d~~~ 245 (353)
.+...++..+.+|.+.. ++...
T Consensus 223 ~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 223 KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 23345666666777766 66543
No 375
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=37.74 E-value=1.3e+02 Score=26.77 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=37.2
Q ss_pred EEEEecCCCeEEEE-ecCCCc-ceEEeccccCCCcCeEEEEeecCCCCCC--eEEEEccCCCeEEE
Q 018591 272 FLCSGSADKSIGIW-KREAFG-KLCRVGAITGHEGPVKCLQASPNAVGGG--FLLYSGSLDKSLRV 333 (353)
Q Consensus 272 ~l~~~~~dg~i~iw-~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~--~~l~s~~~dg~i~i 333 (353)
.++.|..+|.|.-. ...... ....+..+ ....+|..|.++++ . .+|+.++.++.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~-~~~~pI~~l~l~~~----~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLF-QDFEPVQTLLLSSK----KGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECC-TTCCCCCEEEECCS----SSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEeccc-CCCCcceeeEeccC----CCccEEEEEEcCeEEEE
Confidence 67889999987544 332211 11222222 24568999999988 6 89999988876655
No 376
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=34.79 E-value=1.4e+02 Score=26.12 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=37.8
Q ss_pred cEEEEecCCCeEEEEecCCCcc---eEEecccc--CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEE
Q 018591 271 EFLCSGSADKSIGIWKREAFGK---LCRVGAIT--GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV 333 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~i 333 (353)
..+..|+.+|.|.-.-...... ...+.++. ....+|..+.++++ ...|+.++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~----~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAE----RRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETT----TTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCC----CCEEEEEecceEEEc
Confidence 3677888999876443332110 11222222 34568999999998 788999988876655
No 377
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=34.67 E-value=71 Score=27.60 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=38.2
Q ss_pred cEEEEecCCCeEEEEecCCCcce-EEecc--ccCCCcCeE-EEEeecCCCCCCeEEEEccCCCeEEE
Q 018591 271 EFLCSGSADKSIGIWKREAFGKL-CRVGA--ITGHEGPVK-CLQASPNAVGGGFLLYSGSLDKSLRV 333 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~~~~-~~~~~--~~~h~~~v~-~~~~~~~~~~~~~~l~s~~~dg~i~i 333 (353)
..++.|..+|.|.-..+...... ..+.+ +.....+|. .|.++++ +.+|+.++.++.++|
T Consensus 414 tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~----~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 414 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSIN----QLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTT----SSEEEEECSSEEEEE
T ss_pred EEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccC----CCeEEEEecccccee
Confidence 46778999998876655432211 11222 222346785 8999998 889999988876655
No 378
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=33.99 E-value=1.3e+02 Score=26.85 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=36.6
Q ss_pred cEEEEecCCCeEEEE-ecCCCc----ceEEecc--ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEE
Q 018591 271 EFLCSGSADKSIGIW-KREAFG----KLCRVGA--ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV 333 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw-~~~~~~----~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~i 333 (353)
..++.|..+|.|.-- ...... ....+.+ ......+|..|.++++ ...|+.++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~----~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTK----QQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETT----TTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCC----CCEEEEEECCEEEEE
Confidence 367789999987532 221111 0011111 2235668999999998 889999998876654
No 379
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=29.51 E-value=1.9e+02 Score=22.17 Aligned_cols=192 Identities=10% Similarity=-0.074 Sum_probs=102.5
Q ss_pred CeEEEecCCCcEEEEE---cCCceeeeeccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeec-
Q 018591 139 GLIYSGSWDKTLKVWR---VADLKCLESIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEG- 211 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd---~~~~~~~~~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~- 211 (353)
+.++.-+.+|.++--. +........+. ....|..+... +..++..+.+|.++-..+..-. ....-...+.-
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lk 113 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLT 113 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCC
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecC
Confidence 6777777788777543 32221111132 34556665432 3488999999999998875432 11111111111
Q ss_pred cCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc-----ceeeeeeccccceeEEEEE-E-cCcEEEEecCCCeEEE
Q 018591 212 HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV-----RWKLACETKAHEMAVLCVC-L-VGEFLCSGSADKSIGI 284 (353)
Q Consensus 212 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~v~~~~-~-~~~~l~~~~~dg~i~i 284 (353)
..+.. ..+........++..+..|.+..++...-.. .......+... ..+..+. . ++..++..+..|.+..
T Consensus 114 egD~l-~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-d~vv~~~~~~~~~~ll~~T~~G~~kr 191 (276)
T 3no0_A 114 EGDEV-VSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-DETSGLRIWNGEPYLLVITAKGRVKK 191 (276)
T ss_dssp TTCCE-EEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-CCEEEEEEESSCSEEEEEETTSCEEE
T ss_pred CCCEE-EEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-CEEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 12333 4444455556788888899888887543211 01111122222 3333333 2 3568888889999888
Q ss_pred EecCCCcceE----EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEE--EEcCCC
Q 018591 285 WKREAFGKLC----RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV--WWVSKQ 339 (353)
Q Consensus 285 w~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~i--w~~~~~ 339 (353)
..+....... -+..+ ...+.+..+....+ ...++..+.+|.+.. ++.++-
T Consensus 192 ~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~----~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 192 ISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKE----EVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESS----EEEEEEEETTSCEEEEEEEGGGS
T ss_pred eEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCC----CCEEEEEcCCCeEEEeeeCHHHC
Confidence 8765432100 11112 22345555544433 456666777888877 876543
No 380
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=24.24 E-value=2.7e+02 Score=24.29 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=36.8
Q ss_pred cEEEEecCCCeEEEEecCCC------c--ceEEeccccC--------CCcCeEEEEeecCCCCCCeEEEEccCCCeEEE
Q 018591 271 EFLCSGSADKSIGIWKREAF------G--KLCRVGAITG--------HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV 333 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~------~--~~~~~~~~~~--------h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~i 333 (353)
..++.|+.+|.|.-.-.... + .+..+..+.. ...+|..|.++++ ...|+.++.++.++|
T Consensus 421 tVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~----~~~LYV~s~~~V~qV 495 (565)
T 3oky_B 421 TVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRA----SGSLYVAFSTCVIKV 495 (565)
T ss_dssp EEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGG----GTEEEEECSSCEEEE
T ss_pred EEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCC----CCEEEEEecCeEEEe
Confidence 46788999998853322211 0 0111222211 2457899999998 888999998887665
No 381
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=23.77 E-value=2.4e+02 Score=24.42 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=39.0
Q ss_pred eEEEEE--eCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccC-Cceee-EEEEcCCCCeEEeecCCCcEEE
Q 018591 171 VNGLVA--SKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHK-DVSLN-SVVVSDDGKWVYGGGSDGFVMG 240 (353)
Q Consensus 171 v~~i~~--~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~~~~~~~l~~~~~dg~i~i 240 (353)
+++++. ..+ .++.|+.+|.|.-..+..... .......+.... +.+|. .+.++++..+|++++.++.+++
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~-~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPH-GGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTT-EEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCc-cceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 455555 222 677888899876554432210 001122222211 33444 8999999999999887764443
No 382
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.88 E-value=3.1e+02 Score=23.40 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=34.9
Q ss_pred eEEEEcCCCcEEEEeCC-CCCc--ccccceeeeec-cCCceeeEEEEcCCCCeEEeecCCCcEEE
Q 018591 180 IVYSASADGKIKAWGKE-LGKS--HCHSLKGILEG-HKDVSLNSVVVSDDGKWVYGGGSDGFVMG 240 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~-~~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 240 (353)
.++.|+.+|.|.=.-+. .... ........+.. ..+.+|..+.++++..+|++++.++.+++
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 67788889987543332 2110 00112222222 12345599999999999999998875554
No 383
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=22.27 E-value=2.6e+02 Score=21.17 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=73.6
Q ss_pred eEEEecCCCcEEEEEcCCcee-eeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCC---CCcccccceeeeeccC
Q 018591 140 LIYSGSWDKTLKVWRVADLKC-LESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKEL---GKSHCHSLKGILEGHK 213 (353)
Q Consensus 140 ~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~ 213 (353)
.+++.+.+|.|+--....... ...++.. ..+..+.. ..+.++..+..|.++-+.... .+..-......+.-..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 345566777776655432111 1122332 33333333 444677777788866654432 2211111111222222
Q ss_pred CceeeEEEEcCCCCeEEeecCCCcEEEeeccccc---cceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecC
Q 018591 214 DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI---VRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~ 288 (353)
+..|.++....++.+++..+..|.++...+..-. ........+.....-+..... .+..++..+.+|.+..++..
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHH
Confidence 2223455333456678889999999988775421 111122222222222222222 35678888889998888875
Q ss_pred C
Q 018591 289 A 289 (353)
Q Consensus 289 ~ 289 (353)
.
T Consensus 163 e 163 (256)
T 1zvt_A 163 D 163 (256)
T ss_dssp G
T ss_pred H
Confidence 3
Done!