Query 018592
Match_columns 353
No_of_seqs 142 out of 1020
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 02:23:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02696 1-deoxy-D-xylulose-5- 100.0 3E-125 7E-130 944.2 29.2 310 27-337 4-318 (454)
2 TIGR00243 Dxr 1-deoxy-D-xylulo 100.0 5E-119 1E-123 885.6 26.0 262 76-337 1-263 (389)
3 COG0743 Dxr 1-deoxy-D-xylulose 100.0 1E-118 2E-123 876.2 24.4 257 76-336 1-257 (385)
4 PRK12464 1-deoxy-D-xylulose 5- 100.0 2E-117 5E-122 872.9 24.1 255 81-337 1-255 (383)
5 PRK05447 1-deoxy-D-xylulose 5- 100.0 7E-108 2E-112 806.9 26.0 260 76-337 1-260 (385)
6 PF08436 DXP_redisom_C: 1-deox 100.0 7.9E-58 1.7E-62 368.0 1.4 84 221-304 1-84 (84)
7 PF02670 DXP_reductoisom: 1-de 100.0 2.8E-48 6.1E-53 334.5 13.5 129 79-207 1-129 (129)
8 PRK06349 homoserine dehydrogen 98.4 1.9E-06 4E-11 86.8 10.3 159 76-273 3-181 (426)
9 PF03447 NAD_binding_3: Homose 98.2 5E-07 1.1E-11 74.3 0.6 109 85-222 2-115 (117)
10 PRK06270 homoserine dehydrogen 97.9 5.1E-05 1.1E-09 74.4 10.1 169 77-273 3-202 (341)
11 PRK13303 L-aspartate dehydroge 97.9 8.1E-05 1.8E-09 70.5 11.0 145 76-254 1-148 (265)
12 PRK11579 putative oxidoreducta 97.9 0.0032 7E-08 60.9 21.8 203 77-332 5-223 (346)
13 PRK13302 putative L-aspartate 97.9 0.00018 3.8E-09 68.6 12.6 143 75-251 5-148 (271)
14 COG0673 MviM Predicted dehydro 97.9 0.0024 5.3E-08 60.1 19.4 214 75-337 2-236 (342)
15 PF01408 GFO_IDH_MocA: Oxidore 97.8 0.00036 7.8E-09 56.4 10.8 90 78-197 2-91 (120)
16 PRK08374 homoserine dehydrogen 97.7 0.00028 6.1E-09 69.3 10.3 126 77-222 3-145 (336)
17 PRK06813 homoserine dehydrogen 97.6 0.00011 2.3E-09 73.1 6.6 129 77-222 3-145 (346)
18 PRK06392 homoserine dehydrogen 97.6 0.00063 1.4E-08 67.1 10.9 169 78-273 2-192 (326)
19 COG1748 LYS9 Saccharopine dehy 97.5 0.0011 2.4E-08 67.3 12.5 216 76-331 1-230 (389)
20 PRK13304 L-aspartate dehydroge 97.5 0.0024 5.1E-08 60.6 13.4 145 77-254 2-148 (265)
21 PLN02819 lysine-ketoglutarate 97.4 0.0065 1.4E-07 68.4 17.3 194 75-296 568-789 (1042)
22 PF01118 Semialdhyde_dh: Semia 97.2 0.00071 1.5E-08 56.5 5.5 35 78-113 1-35 (121)
23 TIGR01761 thiaz-red thiazoliny 97.2 0.0024 5.2E-08 63.5 10.0 127 76-236 3-131 (343)
24 TIGR03215 ac_ald_DH_ac acetald 97.2 0.0061 1.3E-07 59.4 12.5 159 77-268 2-171 (285)
25 PF03435 Saccharop_dh: Sacchar 97.0 0.007 1.5E-07 59.2 11.6 186 79-293 1-205 (386)
26 PRK09466 metL bifunctional asp 97.0 0.0037 8.1E-08 68.5 9.8 127 77-222 459-598 (810)
27 PRK04207 glyceraldehyde-3-phos 97.0 0.0067 1.5E-07 59.9 10.7 110 76-200 1-110 (341)
28 COG4091 Predicted homoserine d 96.8 0.02 4.4E-07 58.4 12.7 154 73-236 14-171 (438)
29 PF05368 NmrA: NmrA-like famil 96.8 0.0066 1.4E-07 54.5 8.4 98 79-181 1-107 (233)
30 PRK00436 argC N-acetyl-gamma-g 96.8 0.0021 4.6E-08 63.2 5.6 37 76-113 2-38 (343)
31 COG0460 ThrA Homoserine dehydr 96.7 0.003 6.5E-08 63.1 6.1 120 77-221 4-135 (333)
32 PRK08300 acetaldehyde dehydrog 96.7 0.01 2.2E-07 58.6 9.7 160 76-268 4-177 (302)
33 PRK09436 thrA bifunctional asp 96.7 0.01 2.2E-07 65.0 10.4 129 75-222 464-604 (819)
34 PRK00048 dihydrodipicolinate r 96.6 0.0061 1.3E-07 57.5 7.0 127 76-235 1-127 (257)
35 TIGR00036 dapB dihydrodipicoli 96.5 0.018 3.9E-07 54.9 9.7 98 77-199 2-99 (266)
36 TIGR01850 argC N-acetyl-gamma- 96.4 0.0097 2.1E-07 58.7 7.7 35 77-112 1-35 (346)
37 PF13460 NAD_binding_10: NADH( 96.2 0.019 4.2E-07 49.1 7.2 37 79-119 1-37 (183)
38 PLN02700 homoserine dehydrogen 96.1 0.049 1.1E-06 55.3 11.0 56 166-222 107-162 (377)
39 PLN02968 Probable N-acetyl-gam 96.0 0.011 2.5E-07 59.4 5.7 39 75-114 37-75 (381)
40 PRK10206 putative oxidoreducta 95.9 0.12 2.5E-06 50.7 12.2 200 77-330 2-217 (344)
41 COG1712 Predicted dinucleotide 95.8 0.15 3.3E-06 49.5 12.1 141 78-251 2-144 (255)
42 TIGR01832 kduD 2-deoxy-D-gluco 95.8 0.11 2.5E-06 46.3 10.7 64 76-142 5-69 (248)
43 PRK08040 putative semialdehyde 95.8 0.02 4.3E-07 57.0 6.3 38 76-114 4-43 (336)
44 PRK06728 aspartate-semialdehyd 95.6 0.031 6.7E-07 56.0 7.0 37 77-114 6-45 (347)
45 PRK10538 malonic semialdehyde 95.5 0.17 3.6E-06 45.7 10.8 84 77-179 1-85 (248)
46 PRK08219 short chain dehydroge 95.5 0.11 2.3E-06 45.5 9.2 41 76-121 3-43 (227)
47 PRK11863 N-acetyl-gamma-glutam 95.5 0.021 4.6E-07 56.4 5.2 57 76-134 2-59 (313)
48 PF04321 RmlD_sub_bind: RmlD s 95.5 0.043 9.2E-07 52.1 7.0 54 77-132 1-58 (286)
49 PLN02778 3,5-epimerase/4-reduc 95.4 0.051 1.1E-06 51.7 7.4 52 77-130 10-62 (298)
50 PRK06935 2-deoxy-D-gluconate 3 95.3 0.21 4.5E-06 45.2 10.7 65 76-142 15-80 (258)
51 TIGR01851 argC_other N-acetyl- 95.2 0.058 1.3E-06 53.5 7.2 56 78-134 3-58 (310)
52 PRK08267 short chain dehydroge 95.2 0.26 5.6E-06 44.6 10.8 46 76-125 1-46 (260)
53 PRK07326 short chain dehydroge 95.1 0.25 5.5E-06 43.7 10.4 63 77-143 7-72 (237)
54 PRK07806 short chain dehydroge 95.1 0.32 7E-06 43.4 11.1 65 76-142 6-73 (248)
55 PRK05557 fabG 3-ketoacyl-(acyl 95.1 0.39 8.4E-06 42.2 11.5 66 75-143 4-73 (248)
56 PRK12829 short chain dehydroge 95.1 0.28 6E-06 44.0 10.7 83 77-178 12-96 (264)
57 TIGR03855 NAD_NadX aspartate d 95.0 0.32 6.9E-06 46.0 11.3 90 160-254 30-124 (229)
58 TIGR01214 rmlD dTDP-4-dehydror 94.9 0.077 1.7E-06 48.5 6.8 52 78-131 1-56 (287)
59 PRK06101 short chain dehydroge 94.9 0.23 4.9E-06 44.7 9.7 65 76-144 1-65 (240)
60 PRK09186 flagellin modificatio 94.9 0.28 6E-06 43.9 10.1 65 76-144 4-74 (256)
61 PRK12828 short chain dehydroge 94.8 0.31 6.7E-06 42.7 10.0 42 76-121 7-48 (239)
62 PLN02657 3,8-divinyl protochlo 94.8 0.3 6.4E-06 48.6 11.0 32 76-109 60-91 (390)
63 PRK08063 enoyl-(acyl carrier p 94.8 0.21 4.5E-06 44.5 9.0 83 76-176 4-90 (250)
64 COG0604 Qor NADPH:quinone redu 94.7 0.23 5E-06 48.6 9.9 96 76-197 143-239 (326)
65 PRK12825 fabG 3-ketoacyl-(acyl 94.7 0.41 8.8E-06 42.0 10.6 65 76-143 6-74 (249)
66 PRK07024 short chain dehydroge 94.7 0.48 1E-05 43.0 11.3 45 76-124 2-46 (257)
67 PRK07231 fabG 3-ketoacyl-(acyl 94.7 0.34 7.5E-06 43.0 10.1 82 76-176 5-89 (251)
68 PRK06057 short chain dehydroge 94.6 0.37 8E-06 43.6 10.2 62 76-142 7-68 (255)
69 PRK07523 gluconate 5-dehydroge 94.5 0.35 7.6E-06 43.6 10.0 63 77-143 11-77 (255)
70 PRK13394 3-hydroxybutyrate deh 94.5 0.44 9.5E-06 42.7 10.3 66 76-143 7-74 (262)
71 PLN02583 cinnamoyl-CoA reducta 94.5 0.26 5.7E-06 46.4 9.3 34 75-110 5-38 (297)
72 PRK06947 glucose-1-dehydrogena 94.4 0.45 9.8E-06 42.5 10.3 64 76-142 2-69 (248)
73 TIGR01181 dTDP_gluc_dehyt dTDP 94.4 0.13 2.7E-06 47.1 6.9 32 78-109 1-32 (317)
74 PRK06701 short chain dehydroge 94.4 0.67 1.4E-05 43.6 11.9 65 77-143 47-114 (290)
75 PRK06196 oxidoreductase; Provi 94.4 0.43 9.3E-06 45.2 10.5 63 76-142 26-88 (315)
76 PRK05717 oxidoreductase; Valid 94.3 0.55 1.2E-05 42.5 10.6 62 77-142 11-73 (255)
77 PRK07454 short chain dehydroge 94.3 0.66 1.4E-05 41.4 11.0 45 74-122 4-48 (241)
78 PRK05693 short chain dehydroge 94.3 0.56 1.2E-05 42.9 10.8 40 76-119 1-40 (274)
79 PRK07825 short chain dehydroge 94.2 0.61 1.3E-05 42.6 10.9 80 76-175 5-85 (273)
80 PRK09987 dTDP-4-dehydrorhamnos 94.2 0.12 2.7E-06 48.7 6.6 51 77-130 1-59 (299)
81 PF01113 DapB_N: Dihydrodipico 94.2 0.12 2.6E-06 43.8 5.8 36 77-113 1-36 (124)
82 cd05294 LDH-like_MDH_nadp A la 94.2 0.12 2.6E-06 50.3 6.5 49 77-125 1-49 (309)
83 PRK08664 aspartate-semialdehyd 94.1 0.057 1.2E-06 53.2 4.3 32 76-108 3-34 (349)
84 PLN02383 aspartate semialdehyd 94.1 0.076 1.6E-06 52.9 5.2 39 75-114 6-46 (344)
85 PRK08226 short chain dehydroge 94.1 0.52 1.1E-05 42.6 10.1 66 76-143 6-72 (263)
86 cd01078 NAD_bind_H4MPT_DH NADP 94.1 0.33 7.2E-06 43.2 8.8 44 77-124 29-72 (194)
87 PRK12481 2-deoxy-D-gluconate 3 94.1 0.56 1.2E-05 42.7 10.4 65 76-143 8-73 (251)
88 PRK12823 benD 1,6-dihydroxycyc 94.1 0.51 1.1E-05 42.6 10.0 51 76-128 8-58 (260)
89 PRK12743 oxidoreductase; Provi 94.1 0.47 1E-05 43.0 9.9 64 76-142 2-69 (256)
90 COG1086 Predicted nucleoside-d 94.1 0.18 4E-06 53.9 8.2 86 74-162 248-337 (588)
91 TIGR02622 CDP_4_6_dhtase CDP-g 94.1 0.36 7.8E-06 46.2 9.5 35 73-110 2-36 (349)
92 PRK06138 short chain dehydroge 94.1 0.69 1.5E-05 41.2 10.7 64 76-143 5-71 (252)
93 PRK08265 short chain dehydroge 94.0 0.62 1.3E-05 42.6 10.6 64 76-143 6-70 (261)
94 PRK06500 short chain dehydroge 94.0 0.71 1.5E-05 41.0 10.7 48 77-128 7-54 (249)
95 PRK06182 short chain dehydroge 94.0 0.66 1.4E-05 42.5 10.7 83 76-180 3-85 (273)
96 PRK08628 short chain dehydroge 94.0 0.57 1.2E-05 42.2 10.2 64 77-142 8-72 (258)
97 PRK12939 short chain dehydroge 94.0 0.62 1.3E-05 41.3 10.2 45 76-124 7-51 (250)
98 PRK07774 short chain dehydroge 94.0 0.58 1.2E-05 41.7 10.0 64 77-142 7-72 (250)
99 PRK08278 short chain dehydroge 93.9 0.69 1.5E-05 42.8 10.8 63 77-142 7-79 (273)
100 PRK12827 short chain dehydroge 93.9 0.61 1.3E-05 41.2 10.0 65 76-142 6-76 (249)
101 PRK06482 short chain dehydroge 93.9 0.77 1.7E-05 42.0 10.9 62 77-142 3-65 (276)
102 PF01370 Epimerase: NAD depend 93.9 0.051 1.1E-06 47.6 3.1 38 79-118 1-38 (236)
103 PRK09730 putative NAD(P)-bindi 93.9 0.68 1.5E-05 41.0 10.2 83 76-176 1-87 (247)
104 COG1091 RfbD dTDP-4-dehydrorha 93.9 0.13 2.9E-06 50.4 6.2 51 78-131 2-56 (281)
105 PRK05653 fabG 3-ketoacyl-(acyl 93.9 0.79 1.7E-05 40.2 10.5 83 76-177 5-91 (246)
106 PRK08263 short chain dehydroge 93.9 0.88 1.9E-05 41.8 11.2 48 76-127 3-50 (275)
107 CHL00194 ycf39 Ycf39; Provisio 93.8 0.34 7.4E-06 46.0 8.6 30 78-109 2-31 (317)
108 PRK08643 acetoin reductase; Va 93.8 0.71 1.5E-05 41.5 10.3 43 77-123 3-45 (256)
109 PRK14874 aspartate-semialdehyd 93.7 0.094 2E-06 51.5 5.0 37 76-113 1-39 (334)
110 TIGR03325 BphB_TodD cis-2,3-di 93.7 0.72 1.6E-05 42.0 10.3 45 76-124 5-49 (262)
111 PRK06180 short chain dehydroge 93.7 0.89 1.9E-05 41.9 11.0 63 76-142 4-67 (277)
112 PRK08642 fabG 3-ketoacyl-(acyl 93.6 0.91 2E-05 40.4 10.7 65 76-143 5-70 (253)
113 PRK07067 sorbitol dehydrogenas 93.6 0.9 1.9E-05 41.0 10.7 62 77-142 7-69 (257)
114 PRK07814 short chain dehydroge 93.6 0.66 1.4E-05 42.4 10.0 63 76-142 10-76 (263)
115 PRK06194 hypothetical protein; 93.6 0.88 1.9E-05 41.8 10.8 64 76-143 6-73 (287)
116 PRK09135 pteridine reductase; 93.6 0.79 1.7E-05 40.5 10.1 41 77-120 7-47 (249)
117 KOG1198 Zinc-binding oxidoredu 93.6 0.55 1.2E-05 46.9 10.1 139 72-259 154-292 (347)
118 PRK06949 short chain dehydroge 93.5 1.2 2.7E-05 39.8 11.4 43 76-122 9-51 (258)
119 PRK06181 short chain dehydroge 93.5 0.82 1.8E-05 41.3 10.3 41 77-121 2-42 (263)
120 PRK07035 short chain dehydroge 93.5 0.7 1.5E-05 41.5 9.8 43 77-123 9-51 (252)
121 PRK06200 2,3-dihydroxy-2,3-dih 93.5 0.9 2E-05 41.3 10.6 63 76-142 6-69 (263)
122 PRK12936 3-ketoacyl-(acyl-carr 93.5 1 2.3E-05 39.7 10.7 63 76-142 6-69 (245)
123 PRK05866 short chain dehydroge 93.5 1.4 3E-05 41.7 12.1 44 77-124 41-84 (293)
124 TIGR01532 E4PD_g-proteo D-eryt 93.5 0.74 1.6E-05 45.8 10.7 110 78-198 1-120 (325)
125 PLN00141 Tic62-NAD(P)-related 93.5 0.48 1E-05 43.3 8.7 39 76-118 17-55 (251)
126 PRK15181 Vi polysaccharide bio 93.4 0.11 2.4E-06 50.0 4.8 38 71-110 10-47 (348)
127 PRK08589 short chain dehydroge 93.4 0.8 1.7E-05 42.2 10.3 43 76-123 6-48 (272)
128 PRK05671 aspartate-semialdehyd 93.4 0.13 2.7E-06 51.2 5.2 37 76-113 4-42 (336)
129 PRK08993 2-deoxy-D-gluconate 3 93.4 0.95 2.1E-05 41.1 10.5 64 77-143 11-75 (253)
130 PRK12826 3-ketoacyl-(acyl-carr 93.4 0.93 2E-05 40.1 10.2 44 76-123 6-49 (251)
131 PLN02260 probable rhamnose bio 93.4 0.35 7.5E-06 51.0 8.7 36 75-110 5-40 (668)
132 PRK07890 short chain dehydroge 93.3 0.82 1.8E-05 41.0 9.9 43 76-122 5-47 (258)
133 smart00846 Gp_dh_N Glyceraldeh 93.3 0.95 2.1E-05 40.1 10.1 107 78-197 2-117 (149)
134 PRK05565 fabG 3-ketoacyl-(acyl 93.3 0.88 1.9E-05 40.1 9.9 64 76-142 5-72 (247)
135 PLN00016 RNA-binding protein; 93.2 0.53 1.2E-05 46.0 9.2 36 75-112 51-90 (378)
136 PRK06172 short chain dehydroge 93.2 0.95 2E-05 40.7 10.1 63 76-142 7-73 (253)
137 PRK09134 short chain dehydroge 93.2 0.8 1.7E-05 41.5 9.7 65 76-143 9-77 (258)
138 PLN02260 probable rhamnose bio 93.2 0.26 5.5E-06 52.0 7.4 52 77-130 381-433 (668)
139 PRK12742 oxidoreductase; Provi 93.2 0.56 1.2E-05 41.5 8.5 50 76-128 6-55 (237)
140 TIGR01963 PHB_DH 3-hydroxybuty 93.1 0.86 1.9E-05 40.5 9.7 63 77-143 2-68 (255)
141 TIGR01472 gmd GDP-mannose 4,6- 93.1 0.31 6.7E-06 46.4 7.3 31 77-109 1-31 (343)
142 PRK07453 protochlorophyllide o 93.1 1.3 2.8E-05 42.0 11.3 46 75-124 5-50 (322)
143 PLN00112 malate dehydrogenase 93.1 0.54 1.2E-05 48.8 9.4 56 68-125 92-154 (444)
144 PRK12935 acetoacetyl-CoA reduc 93.1 1.1 2.4E-05 39.9 10.3 65 76-143 6-74 (247)
145 PRK07060 short chain dehydroge 93.1 0.73 1.6E-05 40.8 9.1 62 76-142 9-70 (245)
146 PRK12744 short chain dehydroge 93.1 1.3 2.8E-05 40.1 10.8 64 77-142 9-78 (257)
147 PRK05867 short chain dehydroge 93.0 1 2.2E-05 40.7 10.1 44 77-124 10-53 (253)
148 PRK08416 7-alpha-hydroxysteroi 93.0 0.93 2E-05 41.3 9.9 46 76-124 8-53 (260)
149 PRK07831 short chain dehydroge 93.0 1.8 3.8E-05 39.3 11.6 42 76-121 17-59 (262)
150 PRK09880 L-idonate 5-dehydroge 93.0 0.99 2.1E-05 43.1 10.4 95 76-198 170-265 (343)
151 PLN03209 translocon at the inn 93.0 0.74 1.6E-05 49.4 10.4 45 74-122 78-122 (576)
152 PRK11908 NAD-dependent epimera 92.9 0.14 3.1E-06 48.8 4.6 33 76-109 1-33 (347)
153 PRK06924 short chain dehydroge 92.9 0.62 1.3E-05 41.7 8.4 64 76-142 1-65 (251)
154 PRK06124 gluconate 5-dehydroge 92.9 1.2 2.6E-05 40.1 10.3 63 76-142 11-77 (256)
155 cd08294 leukotriene_B4_DH_like 92.8 1 2.2E-05 41.7 10.1 94 77-196 145-238 (329)
156 PRK07832 short chain dehydroge 92.8 1.1 2.4E-05 41.1 10.2 44 77-124 1-44 (272)
157 PRK08017 oxidoreductase; Provi 92.8 1.2 2.6E-05 39.9 10.1 60 77-142 3-62 (256)
158 COG0702 Predicted nucleoside-d 92.8 0.51 1.1E-05 42.4 7.8 64 77-147 1-64 (275)
159 cd05286 QOR2 Quinone oxidoredu 92.8 1.6 3.5E-05 39.1 11.0 95 76-195 137-231 (320)
160 PRK07063 short chain dehydroge 92.8 1.1 2.3E-05 40.6 9.9 45 76-124 7-51 (260)
161 PRK06841 short chain dehydroge 92.8 0.86 1.9E-05 40.9 9.2 33 76-110 15-47 (255)
162 PRK12745 3-ketoacyl-(acyl-carr 92.8 1.3 2.7E-05 39.7 10.2 44 76-122 2-45 (256)
163 PLN02240 UDP-glucose 4-epimera 92.7 0.5 1.1E-05 44.7 8.0 32 76-109 5-36 (352)
164 PRK05875 short chain dehydroge 92.7 1.3 2.9E-05 40.4 10.5 40 77-120 8-47 (276)
165 PRK10217 dTDP-glucose 4,6-dehy 92.7 0.34 7.4E-06 46.0 6.9 33 76-110 1-33 (355)
166 PRK09242 tropinone reductase; 92.7 1.2 2.6E-05 40.2 10.1 45 76-124 9-53 (257)
167 cd08238 sorbose_phosphate_red 92.7 2.7 5.9E-05 41.6 13.4 62 221-296 343-404 (410)
168 PRK06128 oxidoreductase; Provi 92.7 1.2 2.7E-05 41.8 10.5 65 77-143 56-124 (300)
169 COG4221 Short-chain alcohol de 92.7 1.2 2.6E-05 43.3 10.5 47 76-126 6-52 (246)
170 TIGR03206 benzo_BadH 2-hydroxy 92.6 1.6 3.6E-05 38.7 10.7 41 76-120 3-43 (250)
171 PRK05872 short chain dehydroge 92.6 1.3 2.9E-05 41.6 10.6 45 77-125 10-54 (296)
172 PRK12429 3-hydroxybutyrate deh 92.5 1.7 3.7E-05 38.7 10.7 64 76-143 4-71 (258)
173 PRK07102 short chain dehydroge 92.4 0.67 1.4E-05 41.5 8.0 43 76-122 1-43 (243)
174 cd08293 PTGR2 Prostaglandin re 92.4 1.8 3.9E-05 40.7 11.2 95 77-196 156-251 (345)
175 COG2910 Putative NADH-flavin r 92.4 1 2.2E-05 42.8 9.4 39 77-119 1-39 (211)
176 PRK06197 short chain dehydroge 92.4 1 2.2E-05 42.2 9.5 40 76-119 16-55 (306)
177 PRK07074 short chain dehydroge 92.3 1.7 3.6E-05 39.2 10.5 43 77-123 3-45 (257)
178 PRK08177 short chain dehydroge 92.3 1.3 2.8E-05 39.4 9.7 33 76-110 1-33 (225)
179 PLN02572 UDP-sulfoquinovose sy 92.3 0.63 1.4E-05 47.2 8.5 32 76-109 47-78 (442)
180 PRK09072 short chain dehydroge 92.3 2.2 4.7E-05 38.8 11.2 44 76-123 5-48 (263)
181 PRK05650 short chain dehydroge 92.3 1.5 3.3E-05 40.1 10.3 43 77-123 1-43 (270)
182 PRK06914 short chain dehydroge 92.2 1.3 2.9E-05 40.4 9.9 40 77-120 4-43 (280)
183 PRK12937 short chain dehydroge 92.2 2.1 4.5E-05 38.0 10.8 65 76-143 5-73 (245)
184 TIGR01921 DAP-DH diaminopimela 92.2 0.8 1.7E-05 45.8 9.0 39 76-116 3-41 (324)
185 PRK07201 short chain dehydroge 92.2 0.43 9.3E-06 49.4 7.4 47 78-124 2-48 (657)
186 PRK07478 short chain dehydroge 92.1 1.6 3.5E-05 39.3 10.1 63 76-142 6-72 (254)
187 COG0300 DltE Short-chain dehyd 92.1 0.58 1.3E-05 45.6 7.7 50 75-128 5-54 (265)
188 PLN02725 GDP-4-keto-6-deoxyman 92.1 0.27 5.8E-06 45.2 5.2 49 80-130 1-54 (306)
189 PRK12746 short chain dehydroge 92.1 1.2 2.5E-05 40.0 9.2 45 77-124 7-51 (254)
190 cd08250 Mgc45594_like Mgc45594 92.1 1.8 3.9E-05 40.2 10.7 95 76-196 140-234 (329)
191 PLN02427 UDP-apiose/xylose syn 92.1 0.24 5.3E-06 48.1 5.2 35 74-109 12-46 (386)
192 PRK06483 dihydromonapterin red 92.1 1.6 3.6E-05 38.8 10.1 62 76-142 2-63 (236)
193 COG2201 CheB Chemotaxis respon 92.1 1.8 4E-05 43.9 11.4 107 77-203 2-108 (350)
194 PRK06077 fabG 3-ketoacyl-(acyl 92.1 1.5 3.2E-05 39.1 9.7 63 76-141 6-72 (252)
195 PRK07097 gluconate 5-dehydroge 92.0 1.6 3.4E-05 39.8 10.0 64 76-143 10-77 (265)
196 PLN02695 GDP-D-mannose-3',5'-e 92.0 0.24 5.2E-06 48.6 5.0 35 76-112 21-55 (370)
197 PRK06198 short chain dehydroge 91.9 1.3 2.8E-05 39.9 9.3 31 76-108 6-37 (260)
198 PRK07904 short chain dehydroge 91.9 2.5 5.4E-05 38.8 11.3 35 74-109 6-40 (253)
199 cd01065 NAD_bind_Shikimate_DH 91.9 1.8 3.8E-05 36.5 9.5 47 76-126 19-65 (155)
200 PLN02253 xanthoxin dehydrogena 91.9 1.9 4.1E-05 39.6 10.4 45 76-124 18-62 (280)
201 PRK07109 short chain dehydroge 91.9 1.6 3.4E-05 42.3 10.4 63 76-142 8-74 (334)
202 PRK08085 gluconate 5-dehydroge 91.9 1.9 4E-05 38.9 10.2 45 76-124 9-53 (254)
203 PRK08340 glucose-1-dehydrogena 91.8 1.9 4E-05 39.2 10.3 44 77-124 1-44 (259)
204 PRK07666 fabG 3-ketoacyl-(acyl 91.8 1.9 4.2E-05 38.3 10.2 45 76-124 7-51 (239)
205 PRK05854 short chain dehydroge 91.7 1.5 3.2E-05 41.9 9.9 43 76-122 14-56 (313)
206 PRK06463 fabG 3-ketoacyl-(acyl 91.7 2.2 4.7E-05 38.6 10.5 62 77-143 8-69 (255)
207 TIGR00978 asd_EA aspartate-sem 91.6 0.24 5.1E-06 48.8 4.6 33 78-111 2-34 (341)
208 PRK12938 acetyacetyl-CoA reduc 91.6 2.5 5.4E-05 37.7 10.7 83 76-176 3-89 (246)
209 PRK05993 short chain dehydroge 91.6 1.9 4.2E-05 39.8 10.3 42 76-121 4-45 (277)
210 TIGR03201 dearomat_had 6-hydro 91.5 3.2 7E-05 39.8 12.0 105 76-198 167-271 (349)
211 cd08239 THR_DH_like L-threonin 91.5 2 4.4E-05 40.5 10.5 95 76-196 164-259 (339)
212 TIGR02415 23BDH acetoin reduct 91.5 2.1 4.5E-05 38.3 10.1 31 77-109 1-31 (254)
213 PRK07576 short chain dehydroge 91.5 2.2 4.8E-05 39.2 10.5 82 76-176 9-94 (264)
214 PRK06139 short chain dehydroge 91.5 1.6 3.6E-05 42.4 10.1 63 76-142 7-73 (330)
215 PLN02653 GDP-mannose 4,6-dehyd 91.3 0.71 1.5E-05 43.9 7.3 32 77-110 7-38 (340)
216 PRK07775 short chain dehydroge 91.3 2.3 5.1E-05 39.2 10.5 43 76-122 10-52 (274)
217 PRK12384 sorbitol-6-phosphate 91.3 2.3 5.1E-05 38.3 10.3 31 77-109 3-33 (259)
218 PRK08862 short chain dehydroge 91.3 2.2 4.7E-05 39.0 10.1 81 77-176 6-91 (227)
219 TIGR01746 Thioester-redct thio 91.3 0.58 1.3E-05 43.5 6.5 36 78-113 1-36 (367)
220 cd08243 quinone_oxidoreductase 91.2 1.9 4.1E-05 39.3 9.7 93 76-196 143-235 (320)
221 TIGR03589 PseB UDP-N-acetylglu 91.2 1.2 2.7E-05 42.6 8.8 33 77-109 5-37 (324)
222 PRK08213 gluconate 5-dehydroge 91.1 2.3 4.9E-05 38.5 10.1 42 77-122 13-54 (259)
223 cd08295 double_bond_reductase_ 91.1 2.4 5.1E-05 40.2 10.6 96 76-196 152-248 (338)
224 PRK06179 short chain dehydroge 91.1 1.7 3.8E-05 39.5 9.3 38 76-117 4-41 (270)
225 COG0136 Asd Aspartate-semialde 91.1 0.32 7E-06 49.0 4.9 37 76-113 1-39 (334)
226 PRK10675 UDP-galactose-4-epime 91.0 1.5 3.3E-05 41.2 9.1 30 78-109 2-31 (338)
227 PRK08339 short chain dehydroge 91.0 2.7 6E-05 38.7 10.6 45 76-124 8-52 (263)
228 PLN03154 putative allyl alcoho 90.9 2.4 5.2E-05 41.0 10.6 96 77-196 160-255 (348)
229 PRK05786 fabG 3-ketoacyl-(acyl 90.9 2.6 5.7E-05 37.3 10.1 43 76-122 5-47 (238)
230 PF00551 Formyl_trans_N: Formy 90.8 0.95 2E-05 40.5 7.2 55 77-131 1-56 (181)
231 PF00106 adh_short: short chai 90.8 2.7 5.9E-05 35.1 9.5 83 77-176 1-88 (167)
232 cd05284 arabinose_DH_like D-ar 90.8 4.2 9.1E-05 38.1 11.8 99 73-196 165-263 (340)
233 PRK06598 aspartate-semialdehyd 90.8 0.29 6.2E-06 49.7 4.3 33 76-109 1-36 (369)
234 TIGR00639 PurN phosphoribosylg 90.7 5.2 0.00011 36.8 12.0 117 77-194 1-130 (190)
235 smart00859 Semialdhyde_dh Semi 90.7 0.42 9.1E-06 39.4 4.5 33 78-111 1-33 (122)
236 PLN02503 fatty acyl-CoA reduct 90.6 1.6 3.5E-05 47.0 9.8 43 71-113 114-157 (605)
237 PRK07062 short chain dehydroge 90.5 2.5 5.4E-05 38.3 9.8 42 77-122 9-50 (265)
238 cd08274 MDR9 Medium chain dehy 90.5 2.7 5.8E-05 39.5 10.2 93 76-196 178-270 (350)
239 PRK09291 short chain dehydroge 90.4 1.2 2.6E-05 39.8 7.6 49 77-127 3-52 (257)
240 TIGR01546 GAPDH-II_archae glyc 90.3 2.3 5.1E-05 42.7 10.2 101 79-194 1-101 (333)
241 COG0002 ArgC Acetylglutamate s 90.3 0.63 1.4E-05 47.2 6.2 50 76-129 2-51 (349)
242 PRK06113 7-alpha-hydroxysteroi 90.2 3.5 7.7E-05 37.2 10.5 63 76-142 11-77 (255)
243 TIGR01745 asd_gamma aspartate- 90.2 0.27 5.9E-06 49.9 3.6 27 77-104 1-27 (366)
244 TIGR03649 ergot_EASG ergot alk 90.2 0.33 7.2E-06 44.8 3.9 32 78-111 1-32 (285)
245 PRK06123 short chain dehydroge 90.2 3.9 8.3E-05 36.4 10.5 41 77-120 3-43 (248)
246 PLN02214 cinnamoyl-CoA reducta 90.1 1.7 3.6E-05 42.1 8.7 33 76-110 10-42 (342)
247 PRK08251 short chain dehydroge 90.1 3.5 7.7E-05 36.8 10.2 41 76-120 2-42 (248)
248 cd08231 MDR_TM0436_like Hypoth 90.1 3.3 7.2E-05 39.5 10.6 98 75-194 177-275 (361)
249 COG1088 RfbB dTDP-D-glucose 4, 90.1 1.3 2.7E-05 44.8 7.9 52 77-131 1-56 (340)
250 PRK06114 short chain dehydroge 90.0 4.5 9.8E-05 36.6 11.0 51 76-128 8-60 (254)
251 PRK08125 bifunctional UDP-gluc 90.0 0.43 9.4E-06 50.6 5.0 39 71-110 310-348 (660)
252 cd08289 MDR_yhfp_like Yhfp put 90.0 2.5 5.5E-05 39.1 9.5 94 76-196 147-240 (326)
253 TIGR01829 AcAcCoA_reduct aceto 89.9 3.1 6.8E-05 36.7 9.6 41 77-120 1-41 (242)
254 PRK12824 acetoacetyl-CoA reduc 89.9 3.8 8.1E-05 36.2 10.2 43 76-121 2-44 (245)
255 TIGR01777 yfcH conserved hypot 89.9 0.33 7.2E-06 44.1 3.6 29 79-109 1-29 (292)
256 smart00822 PKS_KR This enzymat 89.9 4.7 0.0001 32.8 10.0 23 77-99 1-23 (180)
257 PRK08217 fabG 3-ketoacyl-(acyl 89.9 3.7 7.9E-05 36.4 10.1 44 76-123 5-48 (253)
258 PRK07985 oxidoreductase; Provi 89.7 3.7 8E-05 38.7 10.5 64 77-142 50-117 (294)
259 TIGR01830 3oxo_ACP_reduc 3-oxo 89.7 3.7 7.9E-05 36.0 9.8 31 79-111 1-31 (239)
260 PRK05876 short chain dehydroge 89.7 3.6 7.8E-05 38.4 10.3 45 76-124 6-50 (275)
261 PLN02986 cinnamyl-alcohol dehy 89.6 2 4.3E-05 40.5 8.6 34 76-111 5-38 (322)
262 TIGR01296 asd_B aspartate-semi 89.6 0.4 8.7E-06 47.5 4.1 35 78-113 1-37 (339)
263 PLN02662 cinnamyl-alcohol dehy 89.6 0.42 9.1E-06 44.5 4.0 32 77-110 5-36 (322)
264 cd08244 MDR_enoyl_red Possible 89.5 5.4 0.00012 36.7 11.2 95 75-194 142-236 (324)
265 PRK08261 fabG 3-ketoacyl-(acyl 89.5 3.4 7.5E-05 41.2 10.6 62 77-141 211-272 (450)
266 COG1086 Predicted nucleoside-d 89.5 4.5 9.7E-05 43.7 11.9 155 74-236 114-293 (588)
267 PRK05855 short chain dehydroge 89.5 3.2 7E-05 41.5 10.4 43 77-123 316-358 (582)
268 PRK13535 erythrose 4-phosphate 89.5 3 6.5E-05 41.9 10.1 111 77-198 2-122 (336)
269 PLN02896 cinnamyl-alcohol dehy 89.4 1.9 4.1E-05 41.4 8.5 31 77-109 11-41 (353)
270 KOG4777 Aspartate-semialdehyde 89.4 0.28 6.1E-06 48.7 2.9 31 77-108 4-35 (361)
271 PRK08277 D-mannonate oxidoredu 89.4 3.7 8E-05 37.6 10.1 44 76-123 10-53 (278)
272 TIGR03366 HpnZ_proposed putati 89.4 3.2 7E-05 38.6 9.7 92 77-195 122-214 (280)
273 PRK14982 acyl-ACP reductase; P 89.3 0.82 1.8E-05 45.9 6.1 46 77-124 156-201 (340)
274 PRK07023 short chain dehydroge 89.3 0.44 9.5E-06 42.7 3.8 34 76-111 1-34 (243)
275 PRK01438 murD UDP-N-acetylmura 89.2 3.3 7E-05 42.0 10.4 31 76-109 16-46 (480)
276 PRK05884 short chain dehydroge 89.2 2.7 5.9E-05 37.8 8.9 60 78-142 2-61 (223)
277 cd08259 Zn_ADH5 Alcohol dehydr 89.2 5.7 0.00012 36.6 11.1 89 76-194 163-251 (332)
278 TIGR01179 galE UDP-glucose-4-e 89.1 3 6.5E-05 38.2 9.2 30 78-109 1-30 (328)
279 PRK06484 short chain dehydroge 89.0 6.2 0.00013 39.8 12.2 64 75-142 268-332 (520)
280 PRK07417 arogenate dehydrogena 89.0 6.9 0.00015 37.1 11.8 29 78-109 2-30 (279)
281 PF02719 Polysacc_synt_2: Poly 89.0 1.7 3.7E-05 43.0 8.0 42 79-124 1-43 (293)
282 PLN02166 dTDP-glucose 4,6-dehy 89.0 0.49 1.1E-05 48.1 4.4 32 76-109 120-151 (436)
283 PRK06953 short chain dehydroge 89.0 4.4 9.5E-05 35.9 9.9 39 76-118 1-39 (222)
284 PRK06484 short chain dehydroge 89.0 3.9 8.4E-05 41.3 10.6 63 76-142 5-68 (520)
285 cd08292 ETR_like_2 2-enoyl thi 88.9 4.7 0.0001 37.2 10.4 96 76-196 140-235 (324)
286 TIGR02825 B4_12hDH leukotriene 88.8 4.5 9.8E-05 38.0 10.4 94 77-196 140-234 (325)
287 PRK08936 glucose-1-dehydrogena 88.7 3.7 8E-05 37.2 9.4 64 76-142 7-74 (261)
288 PRK07677 short chain dehydroge 88.6 5.2 0.00011 36.1 10.2 42 77-122 2-43 (252)
289 TIGR01289 LPOR light-dependent 88.5 5.7 0.00012 38.0 10.9 63 77-142 4-70 (314)
290 TIGR03451 mycoS_dep_FDH mycoth 88.4 3.8 8.1E-05 39.5 9.7 94 76-195 177-272 (358)
291 PRK07069 short chain dehydroge 88.4 4.5 9.7E-05 36.0 9.6 44 78-124 1-44 (251)
292 PLN02206 UDP-glucuronate decar 88.4 0.57 1.2E-05 47.8 4.3 31 77-109 120-150 (442)
293 PRK07889 enoyl-(acyl carrier p 88.3 5 0.00011 36.8 10.1 65 76-142 7-74 (256)
294 TIGR02685 pter_reduc_Leis pter 88.3 4.8 0.0001 36.8 10.0 45 77-124 2-46 (267)
295 PRK08703 short chain dehydroge 88.2 1.3 2.9E-05 39.5 6.2 43 77-123 7-49 (239)
296 PRK07577 short chain dehydroge 88.2 4 8.6E-05 36.0 9.0 31 77-109 4-34 (234)
297 cd08268 MDR2 Medium chain dehy 88.1 6.9 0.00015 35.5 10.7 95 76-195 145-239 (328)
298 PRK10309 galactitol-1-phosphat 88.1 5 0.00011 38.2 10.2 98 76-198 161-259 (347)
299 PRK08945 putative oxoacyl-(acy 88.0 2 4.3E-05 38.6 7.1 41 75-119 11-51 (247)
300 cd05282 ETR_like 2-enoyl thioe 88.0 11 0.00025 34.6 12.3 97 74-195 137-233 (323)
301 PRK07792 fabG 3-ketoacyl-(acyl 87.9 3.9 8.4E-05 38.8 9.4 54 76-131 12-67 (306)
302 PLN02650 dihydroflavonol-4-red 87.9 0.73 1.6E-05 44.1 4.6 33 76-110 5-37 (351)
303 cd08249 enoyl_reductase_like e 87.9 8.2 0.00018 36.7 11.5 90 76-191 155-244 (339)
304 PLN02989 cinnamyl-alcohol dehy 87.8 2.8 6.2E-05 39.3 8.3 33 75-109 4-36 (325)
305 KOG2741 Dimeric dihydrodiol de 87.7 4.7 0.0001 41.1 10.2 153 76-257 6-166 (351)
306 cd08301 alcohol_DH_plants Plan 87.6 5.8 0.00013 38.2 10.5 93 76-192 188-281 (369)
307 PRK06079 enoyl-(acyl carrier p 87.5 6.2 0.00013 36.0 10.1 46 76-126 7-54 (252)
308 cd08233 butanediol_DH_like (2R 87.4 4.1 8.8E-05 38.7 9.2 95 76-195 173-268 (351)
309 cd05276 p53_inducible_oxidored 87.4 9.4 0.0002 34.3 11.1 49 76-129 140-188 (323)
310 PRK07201 short chain dehydroge 87.3 5.4 0.00012 41.4 10.7 82 76-176 371-456 (657)
311 KOG1502 Flavonol reductase/cin 87.2 2.7 5.9E-05 42.3 8.2 70 75-146 5-78 (327)
312 cd08230 glucose_DH Glucose deh 87.1 3.5 7.6E-05 39.5 8.7 92 76-195 173-265 (355)
313 PLN00198 anthocyanidin reducta 87.1 0.83 1.8E-05 43.4 4.4 33 76-110 9-41 (338)
314 PRK13011 formyltetrahydrofolat 87.0 7.1 0.00015 38.2 10.8 131 74-212 87-237 (286)
315 PRK06027 purU formyltetrahydro 86.8 7.1 0.00015 38.1 10.6 133 73-212 86-237 (286)
316 cd08269 Zn_ADH9 Alcohol dehydr 86.7 8 0.00017 35.4 10.4 95 76-196 130-226 (312)
317 cd08261 Zn_ADH7 Alcohol dehydr 86.7 11 0.00024 35.4 11.6 94 76-194 160-253 (337)
318 PF07993 NAD_binding_4: Male s 86.7 1.3 2.9E-05 40.7 5.4 41 81-121 1-41 (249)
319 cd08281 liver_ADH_like1 Zinc-d 86.6 5 0.00011 38.9 9.5 94 77-196 193-287 (371)
320 PRK07791 short chain dehydroge 86.6 7.2 0.00016 36.6 10.3 32 76-109 6-37 (286)
321 cd01075 NAD_bind_Leu_Phe_Val_D 86.5 7.6 0.00017 35.6 10.2 44 77-125 29-72 (200)
322 cd08290 ETR 2-enoyl thioester 86.5 9.8 0.00021 35.6 11.1 100 75-194 146-246 (341)
323 COG0451 WcaG Nucleoside-diphos 86.5 1 2.2E-05 41.2 4.5 32 78-111 2-33 (314)
324 cd05278 FDH_like Formaldehyde 86.3 10 0.00022 35.6 11.0 97 76-196 168-264 (347)
325 TIGR00655 PurU formyltetrahydr 86.3 6.8 0.00015 38.3 10.2 132 74-212 82-232 (280)
326 cd08246 crotonyl_coA_red croto 86.2 8.3 0.00018 37.5 10.8 110 77-194 195-310 (393)
327 PRK13301 putative L-aspartate 86.2 4.5 9.8E-05 39.8 8.9 143 77-259 3-156 (267)
328 PRK11199 tyrA bifunctional cho 86.0 7.9 0.00017 38.8 10.8 135 75-228 97-244 (374)
329 COG3320 Putative dehydrogenase 85.9 3.2 6.8E-05 42.8 8.0 83 77-175 1-94 (382)
330 cd08297 CAD3 Cinnamyl alcohol 85.9 16 0.00036 34.3 12.3 96 76-196 166-262 (341)
331 cd08264 Zn_ADH_like2 Alcohol d 85.8 6.2 0.00013 36.7 9.4 89 76-197 163-251 (325)
332 PRK10124 putative UDP-glucose 85.8 6 0.00013 40.8 10.1 81 76-157 143-239 (463)
333 PLN02780 ketoreductase/ oxidor 85.8 5.9 0.00013 38.3 9.5 44 77-124 54-97 (320)
334 TIGR03466 HpnA hopanoid-associ 85.8 1 2.2E-05 41.6 4.1 32 77-110 1-32 (328)
335 PRK05396 tdh L-threonine 3-deh 85.7 10 0.00022 35.8 10.9 97 76-197 164-261 (341)
336 cd05288 PGDH Prostaglandin deh 85.7 8.8 0.00019 35.6 10.3 94 77-196 147-241 (329)
337 TIGR01831 fabG_rel 3-oxoacyl-( 85.6 6.1 0.00013 35.1 8.9 41 79-122 1-41 (239)
338 cd08235 iditol_2_DH_like L-idi 85.6 8.7 0.00019 36.0 10.3 96 76-196 166-262 (343)
339 PRK06125 short chain dehydroge 85.5 4.8 0.0001 36.5 8.3 45 76-124 7-51 (259)
340 PRK10754 quinone oxidoreductas 85.1 11 0.00025 35.0 10.8 92 76-192 141-232 (327)
341 PRK08220 2,3-dihydroxybenzoate 85.0 8.7 0.00019 34.3 9.6 33 76-110 8-40 (252)
342 PRK07856 short chain dehydroge 85.0 7.4 0.00016 35.1 9.2 32 76-109 6-37 (252)
343 PRK12859 3-ketoacyl-(acyl-carr 84.9 8 0.00017 35.3 9.5 31 76-108 6-38 (256)
344 TIGR01751 crot-CoA-red crotony 84.9 10 0.00022 37.3 10.8 114 76-195 190-306 (398)
345 PRK12748 3-ketoacyl-(acyl-carr 84.8 11 0.00024 34.1 10.2 32 76-109 5-38 (256)
346 TIGR03025 EPS_sugtrans exopoly 84.7 8.4 0.00018 38.9 10.4 61 75-136 124-199 (445)
347 PRK08303 short chain dehydroge 84.7 11 0.00023 36.2 10.6 32 76-109 8-39 (305)
348 PLN02686 cinnamoyl-CoA reducta 84.6 5.4 0.00012 39.2 8.8 33 75-109 52-84 (367)
349 PRK08324 short chain dehydroge 84.6 7.8 0.00017 41.5 10.6 45 77-125 423-467 (681)
350 cd05285 sorbitol_DH Sorbitol d 84.6 11 0.00024 35.7 10.6 98 76-195 163-261 (343)
351 PF01073 3Beta_HSD: 3-beta hyd 84.4 2.7 6E-05 40.1 6.5 36 80-115 1-36 (280)
352 cd08256 Zn_ADH2 Alcohol dehydr 84.3 12 0.00025 35.6 10.6 93 77-195 176-270 (350)
353 cd08258 Zn_ADH4 Alcohol dehydr 84.2 14 0.00031 34.7 11.1 97 76-196 165-261 (306)
354 PLN02514 cinnamyl-alcohol dehy 84.0 11 0.00024 36.6 10.4 91 77-196 182-272 (357)
355 PRK05472 redox-sensing transcr 84.0 7.1 0.00015 35.8 8.7 64 71-135 79-156 (213)
356 PRK11150 rfaD ADP-L-glycero-D- 84.0 1.4 3E-05 41.1 4.2 31 79-111 2-32 (308)
357 PRK07634 pyrroline-5-carboxyla 83.9 13 0.00027 34.0 10.3 49 76-125 4-53 (245)
358 cd08278 benzyl_alcohol_DH Benz 83.4 14 0.0003 35.7 10.9 93 77-195 188-281 (365)
359 PRK06997 enoyl-(acyl carrier p 83.2 10 0.00022 35.0 9.5 65 77-143 7-74 (260)
360 PRK06940 short chain dehydroge 83.2 13 0.00028 34.6 10.2 59 78-142 4-66 (275)
361 cd08241 QOR1 Quinone oxidoredu 83.1 13 0.00028 33.5 9.9 94 76-194 140-233 (323)
362 cd08296 CAD_like Cinnamyl alco 83.1 14 0.0003 35.0 10.5 91 76-194 164-254 (333)
363 PRK12747 short chain dehydroge 83.0 10 0.00022 34.2 9.2 44 76-122 4-47 (252)
364 cd08291 ETR_like_1 2-enoyl thi 83.0 14 0.0003 34.8 10.4 91 77-192 144-235 (324)
365 PRK07370 enoyl-(acyl carrier p 82.9 12 0.00025 34.5 9.7 66 76-143 6-77 (258)
366 COG3268 Uncharacterized conser 82.9 11 0.00024 38.8 10.2 158 76-260 6-178 (382)
367 PRK07424 bifunctional sterol d 82.8 7.5 0.00016 39.8 9.1 42 76-121 178-219 (406)
368 cd08284 FDH_like_2 Glutathione 82.7 12 0.00026 35.1 9.9 92 77-194 169-261 (344)
369 PLN02586 probable cinnamyl alc 82.7 8.1 0.00018 37.6 9.0 91 77-196 185-275 (360)
370 COG0057 GapA Glyceraldehyde-3- 82.7 10 0.00022 38.5 9.9 113 77-197 2-120 (335)
371 TIGR02818 adh_III_F_hyde S-(hy 82.7 16 0.00035 35.6 11.1 92 76-191 186-278 (368)
372 TIGR03443 alpha_am_amid L-amin 82.6 3.4 7.4E-05 46.8 7.3 40 74-113 969-1010(1389)
373 PRK08159 enoyl-(acyl carrier p 82.4 14 0.0003 34.5 10.2 64 76-142 10-77 (272)
374 cd08300 alcohol_DH_class_III c 82.4 22 0.00047 34.5 11.8 92 76-191 187-279 (368)
375 cd08252 AL_MDR Arginate lyase 82.3 14 0.0003 34.4 10.1 97 76-197 150-246 (336)
376 PLN02740 Alcohol dehydrogenase 82.3 12 0.00025 36.7 10.0 92 76-191 199-291 (381)
377 PRK05599 hypothetical protein; 82.1 14 0.00031 33.6 9.9 43 77-124 1-43 (246)
378 PRK08306 dipicolinate synthase 81.8 11 0.00024 36.7 9.5 45 76-126 152-196 (296)
379 TIGR02632 RhaD_aldol-ADH rhamn 81.8 9.7 0.00021 41.1 10.0 45 76-124 414-458 (676)
380 PRK06720 hypothetical protein; 81.8 16 0.00035 32.5 9.9 81 76-175 16-100 (169)
381 PLN02775 Probable dihydrodipic 81.5 13 0.00027 37.0 9.9 32 77-110 12-43 (286)
382 cd01336 MDH_cytoplasmic_cytoso 81.5 1.3 2.9E-05 43.6 3.2 43 76-118 2-49 (325)
383 PRK07533 enoyl-(acyl carrier p 81.4 18 0.00039 33.1 10.4 64 77-143 11-78 (258)
384 KOG2733 Uncharacterized membra 81.3 5.3 0.00011 41.5 7.4 47 77-124 6-53 (423)
385 cd05188 MDR Medium chain reduc 81.2 18 0.0004 31.8 10.0 94 76-195 135-228 (271)
386 cd08285 NADP_ADH NADP(H)-depen 81.1 18 0.00039 34.4 10.6 95 76-195 167-262 (351)
387 cd05280 MDR_yhdh_yhfp Yhdh and 80.9 21 0.00045 32.8 10.6 91 77-194 148-238 (325)
388 PRK13656 trans-2-enoyl-CoA red 80.7 18 0.00038 37.6 11.0 100 73-190 38-165 (398)
389 TIGR02819 fdhA_non_GSH formald 80.5 19 0.00041 35.9 10.9 97 77-197 187-297 (393)
390 PTZ00354 alcohol dehydrogenase 80.3 24 0.00052 32.5 10.8 97 77-197 142-238 (334)
391 PLN02996 fatty acyl-CoA reduct 80.3 2.5 5.4E-05 43.8 4.8 38 73-110 8-46 (491)
392 PLN02178 cinnamyl-alcohol dehy 80.2 16 0.00035 36.1 10.2 92 76-196 179-270 (375)
393 PRK06545 prephenate dehydrogen 80.2 35 0.00076 33.8 12.6 39 77-118 1-39 (359)
394 PRK08309 short chain dehydroge 80.1 41 0.00088 30.4 12.0 62 78-144 2-66 (177)
395 PRK10084 dTDP-glucose 4,6 dehy 80.0 11 0.00025 35.8 8.8 30 78-108 2-31 (352)
396 cd02072 Glm_B12_BD B12 binding 80.0 9.6 0.00021 33.5 7.6 46 87-133 13-58 (128)
397 PRK07578 short chain dehydroge 80.0 7 0.00015 34.0 6.9 29 78-109 2-30 (199)
398 cd02071 MM_CoA_mut_B12_BD meth 80.0 17 0.00037 30.5 9.0 45 88-133 14-58 (122)
399 cd08260 Zn_ADH6 Alcohol dehydr 79.9 24 0.00052 33.3 10.9 97 74-195 164-260 (345)
400 PRK08690 enoyl-(acyl carrier p 79.8 14 0.00031 34.0 9.2 83 76-175 6-91 (261)
401 TIGR03023 WcaJ_sugtrans Undeca 79.8 16 0.00034 37.0 10.2 60 76-136 128-202 (451)
402 TIGR02823 oxido_YhdH putative 79.6 20 0.00043 33.2 10.1 91 78-196 148-238 (323)
403 TIGR02817 adh_fam_1 zinc-bindi 79.2 26 0.00056 32.7 10.8 96 76-196 149-244 (336)
404 smart00829 PKS_ER Enoylreducta 79.2 26 0.00057 30.9 10.3 45 77-126 106-150 (288)
405 PLN02358 glyceraldehyde-3-phos 79.2 16 0.00034 36.9 9.9 114 76-199 5-127 (338)
406 cd08253 zeta_crystallin Zeta-c 78.8 29 0.00064 31.2 10.7 52 74-130 143-194 (325)
407 PF06506 PrpR_N: Propionate ca 78.7 9.3 0.0002 34.1 7.3 62 168-236 100-161 (176)
408 COG0289 DapB Dihydrodipicolina 78.3 9.3 0.0002 37.7 7.8 42 76-118 2-43 (266)
409 PRK08264 short chain dehydroge 78.2 11 0.00024 33.4 7.7 40 76-119 6-46 (238)
410 PRK09189 uroporphyrinogen-III 78.2 31 0.00068 31.7 10.9 145 87-236 80-238 (240)
411 PLN02827 Alcohol dehydrogenase 78.0 23 0.00049 34.9 10.4 93 76-192 194-287 (378)
412 cd06578 HemD Uroporphyrinogen- 77.8 18 0.0004 31.8 8.9 142 87-234 83-238 (239)
413 PRK06849 hypothetical protein; 77.6 22 0.00049 35.0 10.4 36 75-112 3-38 (389)
414 PRK08415 enoyl-(acyl carrier p 77.4 29 0.00064 32.5 10.6 63 77-143 6-73 (274)
415 PRK06603 enoyl-(acyl carrier p 77.2 28 0.0006 32.1 10.2 64 76-143 8-76 (260)
416 cd08254 hydroxyacyl_CoA_DH 6-h 77.2 34 0.00073 31.7 10.8 93 77-195 167-259 (338)
417 PF07287 DUF1446: Protein of u 77.2 11 0.00024 38.4 8.2 101 91-200 62-168 (362)
418 TIGR00715 precor6x_red precorr 77.1 5.5 0.00012 38.4 5.8 35 77-114 1-35 (256)
419 PRK13771 putative alcohol dehy 77.1 18 0.00039 33.8 9.1 91 75-196 162-252 (334)
420 PRK13010 purU formyltetrahydro 76.9 27 0.00058 34.4 10.5 132 74-212 91-241 (289)
421 TIGR01757 Malate-DH_plant mala 76.9 5 0.00011 41.1 5.7 56 69-125 37-98 (387)
422 PLN02256 arogenate dehydrogena 76.8 31 0.00067 33.9 11.0 34 75-111 35-68 (304)
423 TIGR03022 WbaP_sugtrans Undeca 76.8 15 0.00033 37.1 9.1 58 75-134 124-197 (456)
424 PF02310 B12-binding: B12 bind 76.8 18 0.0004 29.2 8.0 87 87-175 14-111 (121)
425 PRK06398 aldose dehydrogenase; 76.6 15 0.00033 33.6 8.3 31 77-109 7-37 (258)
426 cd08272 MDR6 Medium chain dehy 76.4 36 0.00078 30.9 10.6 92 76-194 145-236 (326)
427 cd08263 Zn_ADH10 Alcohol dehyd 76.3 34 0.00073 32.9 10.9 98 76-198 188-287 (367)
428 TIGR01501 MthylAspMutase methy 76.2 21 0.00045 31.6 8.7 53 80-133 4-60 (134)
429 TIGR02197 heptose_epim ADP-L-g 76.1 3.7 8E-05 37.9 4.2 30 79-109 1-30 (314)
430 TIGR00518 alaDH alanine dehydr 76.0 17 0.00036 36.6 9.1 45 76-125 167-211 (370)
431 PLN02702 L-idonate 5-dehydroge 75.6 40 0.00086 32.4 11.2 97 77-195 183-281 (364)
432 PRK06505 enoyl-(acyl carrier p 75.4 28 0.00061 32.4 9.9 63 77-143 8-75 (271)
433 cd08262 Zn_ADH8 Alcohol dehydr 75.2 43 0.00093 31.5 11.1 95 77-193 163-258 (341)
434 PRK05086 malate dehydrogenase; 75.2 4.2 9.1E-05 39.8 4.5 33 77-109 1-34 (312)
435 TIGR02130 dapB_plant dihydrodi 75.0 20 0.00043 35.5 9.0 29 78-108 2-30 (275)
436 cd08288 MDR_yhdh Yhdh putative 75.0 30 0.00065 32.0 9.9 50 76-130 147-196 (324)
437 KOG1203 Predicted dehydrogenas 74.4 8.7 0.00019 39.9 6.7 46 71-120 74-119 (411)
438 cd01338 MDH_choloroplast_like 74.3 3 6.4E-05 41.2 3.3 50 75-124 1-55 (322)
439 PRK05647 purN phosphoribosylgl 74.1 53 0.0012 30.4 11.2 150 76-235 1-170 (200)
440 smart00382 AAA ATPases associa 74.1 13 0.00028 28.4 6.2 58 76-134 2-87 (148)
441 PRK09310 aroDE bifunctional 3- 74.0 26 0.00057 36.5 10.1 45 76-125 332-376 (477)
442 cd05213 NAD_bind_Glutamyl_tRNA 74.0 25 0.00053 34.3 9.4 47 76-126 178-224 (311)
443 cd08286 FDH_like_ADH2 formalde 73.9 43 0.00093 31.6 10.8 93 76-192 167-259 (345)
444 TIGR01202 bchC 2-desacetyl-2-h 73.7 16 0.00034 34.7 7.9 83 77-196 146-228 (308)
445 PRK08594 enoyl-(acyl carrier p 73.7 39 0.00085 31.1 10.3 48 76-125 7-57 (257)
446 PRK07984 enoyl-(acyl carrier p 73.5 44 0.00095 31.2 10.6 30 76-107 6-37 (262)
447 KOG0455 Homoserine dehydrogena 73.4 13 0.00029 37.3 7.4 156 78-252 5-178 (364)
448 cd08242 MDR_like Medium chain 73.2 28 0.00062 32.3 9.3 86 77-196 157-242 (319)
449 cd08277 liver_alcohol_DH_like 73.2 27 0.00058 33.8 9.4 91 77-191 186-277 (365)
450 cd08240 6_hydroxyhexanoate_dh_ 72.9 62 0.0014 30.7 11.7 97 75-197 175-272 (350)
451 cd08248 RTN4I1 Human Reticulon 72.9 41 0.0009 31.5 10.4 91 76-195 163-253 (350)
452 COG4565 CitB Response regulato 72.7 28 0.0006 33.8 9.1 78 94-192 18-96 (224)
453 PF01973 MAF_flag10: Protein o 72.7 10 0.00022 33.3 5.9 57 76-137 24-80 (170)
454 TIGR01915 npdG NADPH-dependent 72.7 9.8 0.00021 34.8 6.0 43 78-124 2-44 (219)
455 PLN03096 glyceraldehyde-3-phos 72.4 29 0.00063 35.9 9.9 112 77-198 61-181 (395)
456 TIGR01500 sepiapter_red sepiap 72.2 18 0.00039 32.9 7.6 45 78-124 2-48 (256)
457 KOG4354 N-acetyl-gamma-glutamy 72.1 6 0.00013 39.4 4.7 37 74-111 17-53 (340)
458 PRK09009 C factor cell-cell si 72.0 6 0.00013 35.1 4.4 32 77-108 1-32 (235)
459 cd05289 MDR_like_2 alcohol deh 71.7 40 0.00087 30.2 9.6 89 76-194 145-233 (309)
460 cd05281 TDH Threonine dehydrog 71.7 55 0.0012 31.0 11.0 95 75-194 163-257 (341)
461 TIGR02782 TrbB_P P-type conjug 71.6 13 0.00029 36.3 7.0 57 75-132 131-211 (299)
462 TIGR03013 EpsB_2 sugar transfe 71.3 39 0.00085 34.4 10.5 59 76-135 124-196 (442)
463 COG1560 HtrB Lauroyl/myristoyl 71.2 41 0.00089 33.5 10.4 117 88-225 110-241 (308)
464 PRK12815 carB carbamoyl phosph 71.2 21 0.00046 40.8 9.4 121 74-221 5-143 (1068)
465 cd08298 CAD2 Cinnamyl alcohol 71.0 40 0.00086 31.4 9.7 87 77-198 169-255 (329)
466 PRK08618 ornithine cyclodeamin 70.5 38 0.00082 33.2 9.9 27 168-196 192-218 (325)
467 COG1064 AdhP Zn-dependent alco 70.4 41 0.00089 34.2 10.3 89 77-197 168-257 (339)
468 PRK07121 hypothetical protein; 70.4 3.6 7.7E-05 42.0 2.9 36 167-203 19-54 (492)
469 TIGR00692 tdh L-threonine 3-de 70.4 44 0.00095 31.6 10.0 93 76-194 162-256 (340)
470 cd01076 NAD_bind_1_Glu_DH NAD( 70.3 13 0.00029 35.0 6.4 47 76-125 31-86 (227)
471 PF00107 ADH_zinc_N: Zinc-bind 70.2 21 0.00046 28.8 6.9 84 88-196 2-86 (130)
472 PRK07041 short chain dehydroge 70.2 25 0.00055 31.0 7.9 41 80-124 1-41 (230)
473 PRK06217 hypothetical protein; 70.1 3 6.5E-05 36.9 2.0 19 76-95 1-19 (183)
474 PRK08419 lipid A biosynthesis 70.1 41 0.00088 32.2 9.8 103 104-226 114-231 (298)
475 PRK08118 topology modulation p 70.0 2.9 6.4E-05 37.0 1.9 19 76-95 1-19 (167)
476 PRK09424 pntA NAD(P) transhydr 69.9 49 0.0011 35.2 11.2 108 76-197 165-283 (509)
477 cd02070 corrinoid_protein_B12- 69.9 28 0.0006 31.8 8.3 92 80-172 85-188 (201)
478 cd05291 HicDH_like L-2-hydroxy 69.9 32 0.0007 33.2 9.2 45 77-124 1-45 (306)
479 PRK05928 hemD uroporphyrinogen 69.9 34 0.00074 30.6 8.8 145 87-236 86-245 (249)
480 PRK06223 malate dehydrogenase; 69.9 9.6 0.00021 36.4 5.5 42 76-121 2-43 (307)
481 PRK06523 short chain dehydroge 69.9 6.7 0.00014 35.4 4.2 31 77-109 10-40 (260)
482 PRK02261 methylaspartate mutas 69.6 40 0.00086 29.5 8.9 53 80-133 6-62 (137)
483 PRK08958 sdhA succinate dehydr 69.6 3.6 7.9E-05 43.5 2.8 39 168-207 7-45 (588)
484 cd02067 B12-binding B12 bindin 69.5 23 0.0005 29.1 7.0 45 88-133 14-58 (119)
485 PTZ00325 malate dehydrogenase; 69.3 8.5 0.00018 38.3 5.2 37 72-108 4-40 (321)
486 PRK08462 biotin carboxylase; V 69.2 23 0.0005 35.7 8.3 128 75-223 3-134 (445)
487 PRK12320 hypothetical protein; 69.1 6.1 0.00013 43.4 4.5 30 78-109 2-31 (699)
488 cd08275 MDR3 Medium chain dehy 69.0 55 0.0012 30.0 10.1 95 77-197 140-235 (337)
489 TIGR00640 acid_CoA_mut_C methy 68.9 49 0.0011 28.8 9.2 69 87-156 16-90 (132)
490 cd08279 Zn_ADH_class_III Class 68.5 43 0.00092 32.3 9.6 95 77-196 184-279 (363)
491 KOG1221 Acyl-CoA reductase [Li 68.3 18 0.00039 38.3 7.5 36 75-110 11-47 (467)
492 cd01483 E1_enzyme_family Super 68.2 49 0.0011 27.9 8.9 28 78-106 1-29 (143)
493 PRK01033 imidazole glycerol ph 68.1 32 0.00069 32.7 8.6 153 113-282 31-205 (258)
494 cd08251 polyketide_synthase po 67.7 89 0.0019 28.0 10.9 50 76-130 121-170 (303)
495 PRK01222 N-(5'-phosphoribosyl) 67.6 67 0.0014 29.9 10.4 111 90-207 42-162 (210)
496 cd08265 Zn_ADH3 Alcohol dehydr 67.6 58 0.0012 31.9 10.5 98 77-196 205-304 (384)
497 PRK14106 murD UDP-N-acetylmura 67.5 41 0.0009 33.6 9.6 157 76-253 5-187 (450)
498 PRK08293 3-hydroxybutyryl-CoA 67.5 19 0.00041 34.3 6.9 32 76-110 3-34 (287)
499 PRK09496 trkA potassium transp 67.3 49 0.0011 32.9 10.1 61 76-141 231-291 (453)
500 cd08282 PFDH_like Pseudomonas 67.0 66 0.0014 31.3 10.7 95 76-197 177-283 (375)
No 1
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=100.00 E-value=3.4e-125 Score=944.18 Aligned_cols=310 Identities=81% Similarity=1.243 Sum_probs=297.0
Q ss_pred CCcCCceeecccccccccccceeEee-----cCCCCCCCCCccccccccCCCCCCeeEEEEecCChHhHHHHHHHHhCCC
Q 018592 27 PKLSGGFPLKRKDNATATFGRIVQCS-----AQGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHED 101 (353)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~k~I~ILGSTGSIGtqTLdVI~~~pd 101 (353)
++++|+...+|++. ....++|++|+ .+.|+++|||++..++..+.|+++|||+|||||||||+||||||++|||
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KkI~ILGSTGSIGtqtLdVI~~~pd 82 (454)
T PLN02696 4 PKLPGGFTTKRSSS-RQSRGRRAKCSVAGWSQNSPPPAWPGRAVVEPGRKGWDGPKPISLLGSTGSIGTQTLDIVAENPD 82 (454)
T ss_pred ccCCCcceeccccc-cccccccccccccccccCCCCccCccccccCCcccccCCccEEEEecCCcHhhHHHHHHHHhCcc
Confidence 58899999999998 77888999999 4558999999998778889999999999999999999999999999999
Q ss_pred ceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecHHHHHHHhcCCCCcEEEEeccCccC
Q 018592 102 KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAG 181 (353)
Q Consensus 102 ~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~aG 181 (353)
+|+|+||++|+|+++|++|+++|+|++|++.|++.+.+|++.|.+.+.+++++.|++|++++++++++|+||+||+|++|
T Consensus 83 ~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~egl~~la~~~evDiVV~AIvG~aG 162 (454)
T PLN02696 83 KFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCAG 162 (454)
T ss_pred ccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEECHHHHHHHHcCCCCCEEEEeCccccc
Confidence 99999999999999999999999999999999999999999885432358999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEeecCCchhHHHHhhcCCCCCCcceEEEEecCCcCCCCChh
Q 018592 182 LKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVE 261 (353)
Q Consensus 182 L~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e 261 (353)
|.||++||++||+|||||||||||||++|+++|+++|++|+|||||||||||||+|+++++|++|||||||||||||++|
T Consensus 163 L~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~IlPVDSEHsAIfQ~L~g~~~~~v~kiiLTASGGpFr~~~~e 242 (454)
T PLN02696 163 LKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKILPADSEHSAIFQCIQGLPEGGLRRIILTASGGAFRDWPVE 242 (454)
T ss_pred hHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEeecchhhHHHHHHccCCCccCccEEEEECCchhccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999877789999999999999999999
Q ss_pred hhhcCCHHHHhcCCCCCCCCccceecccccchhHHHHHhhhhcCCCCCceEEEEcCCcceEEEEEecCCceeeeee
Q 018592 262 KLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIHPQSIIHSMVETQVLLYPVVML 337 (353)
Q Consensus 262 ~l~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~IevvIHPqSiIHsmVef~DGs~~~~~~ 337 (353)
+|++||++|||+||||+||+||||||||||||||||||||||||+|||+|||||||||||||||||+|||+.+.|-
T Consensus 243 ~l~~vT~~~ALkHP~W~MG~KITIDSATmmNKglEvIEA~~LF~~~~d~I~vvIHPqSiIHsmVef~DGS~~Aql~ 318 (454)
T PLN02696 243 KLKEVKVADALKHPNWSMGKKITVDSATLMNKGLEVIEAHYLFGADYDDIDIVIHPQSIIHSMVETQDSSVLAQLG 318 (454)
T ss_pred HHhCCCHHHHhhCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECcCCeeeEEEEEcCCcEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999873
No 2
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=100.00 E-value=5.1e-119 Score=885.60 Aligned_cols=262 Identities=53% Similarity=0.810 Sum_probs=253.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
||+|+|||||||||+|||||+++|||+|+|+||+||+|+++|.+|+++|+|++|++.|++.+.++++.+.+.+.+++|+.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~ 80 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV 80 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999988742234589999
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEeecCCchhHHHHhh
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQ~L 235 (353)
|++|++++++.+++|+||+||||++||.||++||++||+|||||||||||||++|++++++++++|+|||||||||||||
T Consensus 81 G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKEsLV~aG~li~~~a~~~~~~I~PVDSEHsAIfQ~L 160 (389)
T TIGR00243 81 GEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALANKESLVTAGHLFLDAVKKYGVQLLPVDSEHNAIFQSL 160 (389)
T ss_pred CHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhHHHhhHHHHHHHHHHcCCeEEeecchHhHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCCCCcceEEEEecCCcCCCCChhhhhcCCHHHHhcCCCCCCCCccceecccccchhHHHHHhhhhcCCCCCceEEE
Q 018592 236 Q-GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEII 314 (353)
Q Consensus 236 ~-g~~~~~v~kIiLTASGGPFr~~~~e~l~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~Ievv 314 (353)
+ |++.++|++|||||||||||+||+++|++|||+|||+||||+||+||||||||||||||||||||||||+|||+||||
T Consensus 161 ~~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vt~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~~~~d~I~vv 240 (389)
T TIGR00243 161 QHGLEELGVVSIILTASGGAFRDTPLEDLPTVTPQQALKHPNWSMGRKITIDSATMMNKGLEYIEARWLFGASAEQIDVL 240 (389)
T ss_pred ccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEE
Confidence 9 876678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcceEEEEEecCCceeeeee
Q 018592 315 IHPQSIIHSMVETQVLLYPVVML 337 (353)
Q Consensus 315 IHPqSiIHsmVef~DGs~~~~~~ 337 (353)
|||||||||||||+|||+.+.|-
T Consensus 241 IHpqSiIHsmVef~DGSv~aql~ 263 (389)
T TIGR00243 241 IHPQSIIHSMVEFQDGSVIAQLG 263 (389)
T ss_pred ECCCCceeEEEEEcCccEEEEeC
Confidence 99999999999999999999884
No 3
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=100.00 E-value=1.1e-118 Score=876.25 Aligned_cols=257 Identities=56% Similarity=0.875 Sum_probs=252.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
||||+|||||||||+|||||+++|||+|+|+||++|+|+++|.+||++|+|++|++.|+..+.+++..+. +++|+.
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~----~~~v~~ 76 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLLP----GTEVLV 76 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhhcc----CceEEe
Confidence 6899999999999999999999999999999999999999999999999999999999999999998875 589999
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEeecCCchhHHHHhh
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQ~L 235 (353)
|++|++++++.+++|+||+||||++||.||++|+++||+|||||||||||||+++++.+|++|++|+|||||||||||||
T Consensus 77 G~~~l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANKEsLV~aG~l~~~~~k~~g~~llPVDSEH~AifQ~L 156 (385)
T COG0743 77 GEEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANKESLVTAGELVMDAAKESGAQLLPVDSEHNAIFQCL 156 (385)
T ss_pred cHHHHHHHHhcCCCCEEeehhhhhcccHHHHHHHHcCCceeecchhhhhcccHHHHHHHHHcCCEEeccCchhHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEEecCCcCCCCChhhhhcCCHHHHhcCCCCCCCCccceecccccchhHHHHHhhhhcCCCCCceEEEE
Q 018592 236 QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIII 315 (353)
Q Consensus 236 ~g~~~~~v~kIiLTASGGPFr~~~~e~l~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~IevvI 315 (353)
+|+..++|++|||||||||||+|++++|.+|||+|||+||||+||+||||||||||||||||||||||||+|||+|||||
T Consensus 157 ~~~~~~~v~~iiLTASGGpFR~~~~~~L~~VT~eqAl~HPnWsMG~KITvDSATmmNKGLEvIEA~~LF~~~~~~IeVvI 236 (385)
T COG0743 157 QGETQKGVKKIILTASGGPFRDKSLEELANVTPEQALKHPNWSMGRKITVDSATMMNKGLEVIEAHWLFGLPYEQIEVVI 236 (385)
T ss_pred CccccCcceEEEEecCCCCcCCCCHHHHccCCHHHHhcCCCCCCCCcccccHHHHhhhhHHHHHHHHHhCCCHHHeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEEEecCCceeeee
Q 018592 316 HPQSIIHSMVETQVLLYPVVM 336 (353)
Q Consensus 316 HPqSiIHsmVef~DGs~~~~~ 336 (353)
||||||||||||.|||+.+.|
T Consensus 237 HPQSiIHsmV~~~DGSviAql 257 (385)
T COG0743 237 HPQSIIHSMVEYVDGSVIAQL 257 (385)
T ss_pred cccchheeeEEeccCCEEEec
Confidence 999999999999999999876
No 4
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=100.00 E-value=2.2e-117 Score=872.92 Aligned_cols=255 Identities=50% Similarity=0.811 Sum_probs=248.1
Q ss_pred EEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecHHHH
Q 018592 81 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGV 160 (353)
Q Consensus 81 ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~~gl 160 (353)
|||||||||+|||||+++|||+|+|+||+||+|+++|.+|+++|+|++|++.|++.+.+|++.+. +.+++|+.|++|+
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~--~~~~~v~~G~~~l 78 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLS--ANTSKITYGTDGL 78 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhcc--CCCcEEEECHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998774 3458999999999
Q ss_pred HHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEeecCCchhHHHHhhcCCCC
Q 018592 161 IEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPE 240 (353)
Q Consensus 161 ~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQ~L~g~~~ 240 (353)
+++++.+++|+||+||||++||.||++||++||+|||||||||||||++|++++++++++|+|||||||||||||+|++.
T Consensus 79 ~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~~~~iiPVDSEHsAIfQ~L~~~~~ 158 (383)
T PRK12464 79 IAVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALANKETLVAAGHIVTDLAKQNGCRLIPVDSEHSAIFQCLNGENN 158 (383)
T ss_pred HHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHcCCeEEeechhHHHHHHHccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCcceEEEEecCCcCCCCChhhhhcCCHHHHhcCCCCCCCCccceecccccchhHHHHHhhhhcCCCCCceEEEEcCCcc
Q 018592 241 GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIHPQSI 320 (353)
Q Consensus 241 ~~v~kIiLTASGGPFr~~~~e~l~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~IevvIHPqSi 320 (353)
++|++|||||||||||++|+++|++|||+|||+||||+||+||||||||||||||||||||||||+||||||||||||||
T Consensus 159 ~~v~kiiLTASGGpFr~~~~e~l~~vT~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~i~~d~I~vvIHPqSi 238 (383)
T PRK12464 159 KEIDKLIVTASGGAFRDKTREEMATLTAKDALKHPNWLMGAKLTIDSATLMNKGFEVIEAHWLFDIPYEKIDVLIHKESI 238 (383)
T ss_pred ccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCceeeeee
Q 018592 321 IHSMVETQVLLYPVVML 337 (353)
Q Consensus 321 IHsmVef~DGs~~~~~~ 337 (353)
|||||||+|||+.+.|-
T Consensus 239 VHsmVef~DGSv~aql~ 255 (383)
T PRK12464 239 IHSLVEFIDGSVLAQLG 255 (383)
T ss_pred eeEEEEEcCccEEEEeC
Confidence 99999999999999884
No 5
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=100.00 E-value=7.1e-108 Score=806.91 Aligned_cols=260 Identities=59% Similarity=0.903 Sum_probs=253.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
||+|+|||||||||+|||||++++||+|+|+||+|++|+++|.+|+++|+|++|++.|++.+.+|++.+.+ .+++++.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~--~~~~v~~ 78 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAA--AGIEVLA 78 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcc--CCceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999988753 4578999
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEeecCCchhHHHHhh
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQ~L 235 (353)
|++|+.++++.+++|+||+||+|++||+||++||++||+|+|||||+|||||++|+++++++|++|+|||||||||||||
T Consensus 79 G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~PVDSEh~ai~q~l 158 (385)
T PRK05447 79 GEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILPVDSEHSAIFQCL 158 (385)
T ss_pred ChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEEECHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEEecCCcCCCCChhhhhcCCHHHHhcCCCCCCCCccceecccccchhHHHHHhhhhcCCCCCceEEEE
Q 018592 236 QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIII 315 (353)
Q Consensus 236 ~g~~~~~v~kIiLTASGGPFr~~~~e~l~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~IevvI 315 (353)
++.+.++|++|+|||||||||+|++++|++|||+|||+||||+||+|||||||||||||||+||||||||+|||+|||||
T Consensus 159 ~~~~~~~i~~iilTASGGpFr~~~~~~l~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IEA~~Lf~~~~~~I~vvI 238 (385)
T PRK05447 159 PGEKQEGVEKIILTASGGPFRDWPLEELANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIEAHWLFGLPYEQIEVVI 238 (385)
T ss_pred cCCCccccceEEEecCCCcccCCCHHHHhcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHhHHHHcCCChhhEEEEE
Confidence 99877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEEEecCCceeeeee
Q 018592 316 HPQSIIHSMVETQVLLYPVVML 337 (353)
Q Consensus 316 HPqSiIHsmVef~DGs~~~~~~ 337 (353)
||||||||||||+|||+.+.|-
T Consensus 239 HpqSivHsmVef~DGsv~aql~ 260 (385)
T PRK05447 239 HPQSIIHSMVEYVDGSVLAQLG 260 (385)
T ss_pred CCcCceeEEEEEeCCcEEEeeC
Confidence 9999999999999999999873
No 6
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=100.00 E-value=7.9e-58 Score=367.96 Aligned_cols=84 Identities=73% Similarity=1.126 Sum_probs=77.9
Q ss_pred EeecCCchhHHHHhhcCCCCCCcceEEEEecCCcCCCCChhhhhcCCHHHHhcCCCCCCCCccceecccccchhHHHHHh
Q 018592 221 ILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEA 300 (353)
Q Consensus 221 IlPVDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~l~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA 300 (353)
|+|||||||||||||+|.+.++|++|||||||||||++++++|++||++|||+||||+||+|||||||||||||||||||
T Consensus 1 i~PvDSEHsAifQ~L~~~~~~~v~~i~lTASGGpFr~~~~~~l~~vt~~~al~HP~W~MG~KITiDSATm~NKglEviEA 80 (84)
T PF08436_consen 1 ILPVDSEHSAIFQCLQGEKREEVEKIILTASGGPFRDKPREELKNVTPEQALKHPNWSMGKKITIDSATMMNKGLEVIEA 80 (84)
T ss_dssp EEE-SHHHHHHHHHSGHHHHCTEEEEEEEE--STTTTSHHHHHTT--HHHHTSSSSSCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CcccccHHHHHHHHCCCCCccccCEEEEECcchhhCCCCHHHHcCCCHHHHhhCCCCcCCCeeeechHHHHHHhHHHHHH
Confidence 79999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 018592 301 HYLF 304 (353)
Q Consensus 301 ~~LF 304 (353)
||||
T Consensus 81 ~~LF 84 (84)
T PF08436_consen 81 HWLF 84 (84)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9999
No 7
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=100.00 E-value=2.8e-48 Score=334.53 Aligned_cols=129 Identities=57% Similarity=0.852 Sum_probs=119.1
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecHH
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQ 158 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~~ 158 (353)
|+|||||||||+|||||+++|||+|+|+||+||+|+++|.+|+++|+|++|++.|++.++.|++.+...+.+++++.|++
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 78999999999999999999999999999999999999999999999999999999999999998865567899999999
Q ss_pred HHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecc
Q 018592 159 GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 207 (353)
Q Consensus 159 gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG 207 (353)
|++++++++++|+||+||+|++||+||++||++||+|||||||||||||
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLANKEsLV~aG 129 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALANKESLVCAG 129 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE--SHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEechhhhhcCC
Confidence 9999999899999999999999999999999999999999999999998
No 8
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.38 E-value=1.9e-06 Score=86.76 Aligned_cols=159 Identities=21% Similarity=0.337 Sum_probs=104.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC--------ceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd--------~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~ 147 (353)
+-+|+|+| +|.||+..++++.++++ +++|++++.. |.++. +.+....
T Consensus 3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~----~~~~~~~------------------- 57 (426)
T PRK06349 3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKD----RGVDLPG------------------- 57 (426)
T ss_pred eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhc----cCCCCcc-------------------
Confidence 45899999 79999999999988753 6899998754 43321 1111100
Q ss_pred CCCcEEEecHHHHHHHhcCCCCcEEEEeccCc-cCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEe----
Q 018592 148 EEKPEILAGEQGVIEAARHPDAVTVVTGIVGC-AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL---- 222 (353)
Q Consensus 148 ~~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~-aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~Il---- 222 (353)
..+. +...+++..+++|+|+.++.|. .+..-+.+|+++||.|..+||.-+..-|+-+.++|+++|+.+.
T Consensus 58 ---~~~~---~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEas 131 (426)
T PRK06349 58 ---ILLT---TDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAA 131 (426)
T ss_pred ---ccee---CCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEE
Confidence 0111 1245667778999999998663 3455567999999999999998888889999999999998776
Q ss_pred -----ecCCchhHHHHhhcCCCCCCcceEEEEecCCcCCCCChhhh--hcCCHHHHhc
Q 018592 223 -----PADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKL--KEVKVADALK 273 (353)
Q Consensus 223 -----PVDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~l--~~vT~~~ALk 273 (353)
|+ +..+-++|.+. .|.+|.=-=+|= -++=+.+| +..+.+|||+
T Consensus 132 V~ggiPi---i~~l~~~l~~~---~I~~I~GIlnGT--~nyIl~~m~~~g~~f~~al~ 181 (426)
T PRK06349 132 VAGGIPI---IKALREGLAAN---RITRVMGIVNGT--TNYILTKMTEEGLSFEDALK 181 (426)
T ss_pred eeccCch---HHHHHhhcccC---CeeEEEEEEeCc--HHHHHhhhhhcCCCHHHHHH
Confidence 32 34455555554 455543111111 01114455 4677777774
No 9
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.16 E-value=5e-07 Score=74.33 Aligned_cols=109 Identities=24% Similarity=0.320 Sum_probs=73.1
Q ss_pred CChHhHHHHHHHHhCCC--ceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecHHHHHH
Q 018592 85 TGSIGTQTLDIVAEHED--KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIE 162 (353)
Q Consensus 85 TGSIGtqTLdVI~~~pd--~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~ 162 (353)
.|.||++.++.+.+.++ +|+|++++..+ ..+.... .....+ ..+... +.+
T Consensus 2 ~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~--~~~~~~~-------------------~~~~~~----~~~~~~---~~~ 53 (117)
T PF03447_consen 2 FGNVGRGLLEQLKEQQERIDLEVVGVADRS--MLISKDW-------------------AASFPD----EAFTTD---LEE 53 (117)
T ss_dssp -SHHHHHHHHHHHHTHHHCEEEEEEEEESS--EEEETTH-------------------HHHHTH----SCEESS---HHH
T ss_pred CCHHHHHHHHHHHhCcccCCEEEEEEEECC--chhhhhh-------------------hhhccc----ccccCC---HHH
Confidence 69999999999999875 69999988665 2111111 111110 122222 334
Q ss_pred HhcCCCCcEEEEeccCccCcHH-HHHHHHcCCcEeeeccccee--ecccchhHHhhhcCCeEe
Q 018592 163 AARHPDAVTVVTGIVGCAGLKP-TVAAIEAGKDIALANKETLI--AGGPFVLPLAHKHNIKIL 222 (353)
Q Consensus 163 ~a~~~~~D~Vv~AIvG~aGL~p-T~~Ai~~gK~IaLANKESLV--~aG~li~~~a~~~~~~Il 222 (353)
+....++|+||.+ .|...+.. ...++++|+.|..+||+.+. .-++-|.++|+++|++++
T Consensus 54 ~~~~~~~dvvVE~-t~~~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 54 LIDDPDIDVVVEC-TSSEAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHTHTT-SEEEE--SSCHHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HhcCcCCCEEEEC-CCchHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 4444479999999 55544443 67899999999999999999 889999999999998874
No 10
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.95 E-value=5.1e-05 Score=74.38 Aligned_cols=169 Identities=22% Similarity=0.287 Sum_probs=107.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC--------CceEEEEEeecC---------CHHHHHHHHHhhCCCEEEEeCccchHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGS---------NITLLADQVKRFKPQVVAVRNESLLDE 139 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~p--------d~F~VvaLaags---------Nv~lL~~Q~~eFkPk~V~i~de~~~~~ 139 (353)
.+|+|+|. |-||+..++.+++++ .+++|+|++-.+ |.+.+.+..+++..
T Consensus 3 i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~------------- 68 (341)
T PRK06270 3 MKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGK------------- 68 (341)
T ss_pred EEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCC-------------
Confidence 47999995 999999999998764 269999987532 33333333332210
Q ss_pred HHHHhhcCCCCcEEEe---cHHHHHHHhcCCCCcEEEEeccCc-----cCcHHHHHHHHcCCcEeeecccceeecccchh
Q 018592 140 IKEALANVEEKPEILA---GEQGVIEAARHPDAVTVVTGIVGC-----AGLKPTVAAIEAGKDIALANKETLIAGGPFVL 211 (353)
Q Consensus 140 l~~~l~~~~~~~~v~~---G~~gl~~~a~~~~~D~Vv~AIvG~-----aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~ 211 (353)
...+. ....+.++...+++|+||.+..-. .+..-...|+++||.|..+||.-+-.-++-+.
T Consensus 69 -----------~~~~~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~ 137 (341)
T PRK06270 69 -----------LADYPEGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELK 137 (341)
T ss_pred -----------cccCccccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHH
Confidence 00000 112455666677899999987532 23566789999999999999988877788889
Q ss_pred HHhhhcCCeEeecCC---chhHHHHhhcC-CCCCCcceEEEEecCCcCCCCChhhh--hcCCHHHHhc
Q 018592 212 PLAHKHNIKILPADS---EHSAIFQCIQG-LPEGALRRIILTASGGAFRDWPVEKL--KEVKVADALK 273 (353)
Q Consensus 212 ~~a~~~~~~IlPVDS---EHsAIfQ~L~g-~~~~~v~kIiLTASGGPFr~~~~e~l--~~vT~~~ALk 273 (353)
++|++++..+.- .. -+.-++|.|+. ...+.|.+|.=-=||=- ++=+.+| +..+.+|||+
T Consensus 138 ~~A~~~g~~~~~-ea~v~~glPii~~l~~~l~g~~I~~I~GIlnGT~--nyIl~~m~~~g~~f~~al~ 202 (341)
T PRK06270 138 ELAKKNGVRFRY-EATVGGAMPIINLAKETLAGNDIKSIKGILNGTT--NYILTRMEEEGLSYEQALA 202 (341)
T ss_pred HHHHHcCCEEEE-eeeeeechhHHHHHHhhcccCceEEEEEEEeCcH--HHHHHHHhhcCCCHHHHHH
Confidence 999999987761 00 13335555532 22234555432222211 1224455 5788888886
No 11
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.94 E-value=8.1e-05 Score=70.51 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=104.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags-Nv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
|.||+|+|. |.||+..++.+.++|+ ++++++.... +.+...+. +.. ++.++
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~-~~l~~v~~~~~~~~~~~~~---~~~-----------------------~~~~~ 52 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPD-LRVDWVIVPEHSIDAVRRA---LGE-----------------------AVRVV 52 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCC-ceEEEEEEcCCCHHHHhhh---hcc-----------------------CCeee
Confidence 468999999 9999999999998875 8888877432 22222111 110 12222
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeec--ccchhHHhhhcCCeEeecCCchhHHH
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKILPADSEHSAIF 232 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~a--G~li~~~a~~~~~~IlPVDSEHsAIf 232 (353)
.. +.++ ..++|+|+.+..-.+-..-...++++||.+...+...+--. ++.+.+.|+++|.+++. +|-.-...
T Consensus 53 ~d---~~~l--~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg~ 126 (265)
T PRK13303 53 SS---VDAL--PQRPDLVVECAGHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGGI 126 (265)
T ss_pred CC---HHHh--ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhCH
Confidence 22 3344 46799999997776666778999999999999998877533 67788899999987665 77777777
Q ss_pred HhhcCCCCCCcceEEEEecCCc
Q 018592 233 QCIQGLPEGALRRIILTASGGA 254 (353)
Q Consensus 233 Q~L~g~~~~~v~kIiLTASGGP 254 (353)
++|+-.+...++.+.+|.-.-|
T Consensus 127 d~l~~~~~g~~~~v~~~~~k~p 148 (265)
T PRK13303 127 DALAAAKEGGLDEVTYTGRKPP 148 (265)
T ss_pred HHHHHHHhCCceEEEEEEecCh
Confidence 7777556667899999865555
No 12
>PRK11579 putative oxidoreductase; Provisional
Probab=97.92 E-value=0.0032 Score=60.91 Aligned_cols=203 Identities=15% Similarity=0.186 Sum_probs=129.1
Q ss_pred eeEEEEecCChHhHH-HHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQ-TLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtq-TLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
-||+|+|. |.||.. .+..+++.|+ ++|+|++. .|.++.. .+|.. ++++
T Consensus 5 irvgiiG~-G~i~~~~~~~~~~~~~~-~~l~av~d-~~~~~~~---~~~~~------------------------~~~~- 53 (346)
T PRK11579 5 IRVGLIGY-GYASKTFHAPLIAGTPG-LELAAVSS-SDATKVK---ADWPT------------------------VTVV- 53 (346)
T ss_pred ceEEEECC-CHHHHHHHHHHHhhCCC-CEEEEEEC-CCHHHHH---hhCCC------------------------Ccee-
Confidence 48999995 999984 6788888775 99999864 5655432 22210 1121
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeec--ccchhHHhhhcCCeEeec-----CCch
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKILPA-----DSEH 228 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~a--G~li~~~a~~~~~~IlPV-----DSEH 228 (353)
+.+.++.+.+++|.|+.+..=..-..-+..|+++||.|.. .|-.-... ..-+.++|+++|..+... |..+
T Consensus 54 --~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~-EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~ 130 (346)
T PRK11579 54 --SEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVV-DKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDF 130 (346)
T ss_pred --CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEE-eCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHH
Confidence 2345666778899999998877888889999999999874 66643333 355677888888776543 5566
Q ss_pred hHHHHhhcCCCCCCcceEEEEecCCcCCCCChhhhhcCCHHHHhcCCCCCCCCccceecccccchhHHHHH-hhhhcCCC
Q 018592 229 SAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHYLFGAE 307 (353)
Q Consensus 229 sAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~l~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIE-A~~LF~i~ 307 (353)
..+-|.++.....+|..+ .+.-+-++.. ..++|..-+. -..+.|++-|--.|- ++||||-
T Consensus 131 ~~~k~~i~~g~iG~i~~~--~~~~~~~~~~--------------~~~~w~~~~~--~ggG~l~d~g~H~id~~~~l~G~- 191 (346)
T PRK11579 131 LTLKALLAEGVLGEVAYF--ESHFDRFRPQ--------------VRQRWREQGG--PGSGIWYDLAPHLLDQAIQLFGL- 191 (346)
T ss_pred HHHHHHHhcCCCCCeEEE--EEEecccCCC--------------CccccccCCC--CCCcchhhhhhhHHHHHHHHhCC-
Confidence 677777765444445433 3332222210 1245653211 135678888855553 5899996
Q ss_pred CCceEEEE---cC----CcceEEEEEecCCce
Q 018592 308 YDNIEIII---HP----QSIIHSMVETQVLLY 332 (353)
Q Consensus 308 ~d~IevvI---HP----qSiIHsmVef~DGs~ 332 (353)
+.++.... +| +-..+.+++|.||..
T Consensus 192 ~~~v~a~~~~~~~~~~~~D~~~~~l~f~~g~~ 223 (346)
T PRK11579 192 PVSITVDLAQLRPGAQSTDYFHAILSYPQRRV 223 (346)
T ss_pred CeEEEEEeeeecCCCCCCceEEEEEEECCeEE
Confidence 44555433 23 336688889998865
No 13
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.90 E-value=0.00018 Score=68.62 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=99.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
.+.||+|+|. |.||+.-.+-+.+....++|+++. .++.+...+++.++....+ +
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~-dr~~~~a~~~a~~~g~~~~------------------------~ 58 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVA-VRDPQRHADFIWGLRRPPP------------------------V 58 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEE-CCCHHHHHHHHHhcCCCcc------------------------c
Confidence 3578999995 999999888887642458998875 4577777777766652111 0
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeE-eecCCchhHHHH
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI-LPADSEHSAIFQ 233 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~I-lPVDSEHsAIfQ 233 (353)
+.+.+++. ++|.|+.+..-.+=-.-...++++||.+...+-.++.- -.-+.+.|+++|.++ +| |=...-|+
T Consensus 59 ---~~~eell~--~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~gal~~-~~~L~~~A~~~g~~l~v~--sGa~~g~d 130 (271)
T PRK13302 59 ---VPLDQLAT--HADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVGALLR-NEDLIDLARQNGGQIIVP--TGALLGLD 130 (271)
T ss_pred ---CCHHHHhc--CCCEEEECCCcHHHHHHHHHHHHcCCcEEEecchhHHh-HHHHHHHHHHcCCEEEEc--chHHHhHH
Confidence 12234443 47999998766555555688999999987654333321 255677889999887 56 67777788
Q ss_pred hhcCCCCCCcceEEEEec
Q 018592 234 CIQGLPEGALRRIILTAS 251 (353)
Q Consensus 234 ~L~g~~~~~v~kIiLTAS 251 (353)
+|+......++.+.+|.-
T Consensus 131 ~l~~g~iG~~~~v~~~tr 148 (271)
T PRK13302 131 AVTAAAEGTIHSVKMITR 148 (271)
T ss_pred HHHHHHcCCceEEEEEEe
Confidence 887656677888988875
No 14
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.86 E-value=0.0024 Score=60.09 Aligned_cols=214 Identities=17% Similarity=0.205 Sum_probs=145.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
.+.||+|+|+.|..++.-+..+++.++.++++|+. .+|-+++.+.+++|....++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~-d~~~~~a~~~a~~~~~~~~~------------------------ 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVV-DRDPERAEAFAEEFGIAKAY------------------------ 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEe-cCCHHHHHHHHHHcCCCccc------------------------
Confidence 46799999999888888999999987668888865 56899999999999865211
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEee------ecccceeecccchhHHhhhcCCeEee-----
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL------ANKETLIAGGPFVLPLAHKHNIKILP----- 223 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaL------ANKESLV~aG~li~~~a~~~~~~IlP----- 223 (353)
+.+.++.+.+++|.|+.+..=..=...+++|+++||.|.. -=.| ..-+.++|++++..+.-
T Consensus 57 ---~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~e-----a~~l~~~a~~~~~~l~v~~~~R 128 (342)
T COG0673 57 ---TDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEE-----AEELVELARKAGVKLMVGFNRR 128 (342)
T ss_pred ---CCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHH-----HHHHHHHHHHcCCceeeehhhh
Confidence 1335566777899999999999999999999999997653 1122 23456778887654432
Q ss_pred cCCchhHHHHhhcCCCCCCcceEEEEecCCcCCCCChhhhhcCCHHHHhcCCCCCCCCccceecccccchhHHHHH-hhh
Q 018592 224 ADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHY 302 (353)
Q Consensus 224 VDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~l~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIE-A~~ 302 (353)
=|.-+.++-++|.......|..+..+....... .-..+.|.+..+-.= +.++..|.-.|- ++|
T Consensus 129 f~p~~~~~k~li~~g~lG~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g--G~l~d~giH~lD~~~~ 192 (342)
T COG0673 129 FDPAVQALKELIDSGALGEVVSVQASFSRDRPN--------------PPPPPWWRFDRADGG--GALLDLGIHDLDLLRF 192 (342)
T ss_pred cCHHHHHHHHHHhcCCcCceEEEEEEeeccccc--------------cCCccceecccccCC--CchhhhHHHHHHHHHH
Confidence 244555666666554555666666554443321 122344544433222 467777776554 689
Q ss_pred hcCC-CCCceEEEEcCC--------cceEEEEEecCCceeeeee
Q 018592 303 LFGA-EYDNIEIIIHPQ--------SIIHSMVETQVLLYPVVML 337 (353)
Q Consensus 303 LF~i-~~d~IevvIHPq--------SiIHsmVef~DGs~~~~~~ 337 (353)
|||- +.....+..+.+ -..+.+.+|.||.+.....
T Consensus 193 l~G~~~~~~v~a~~~~~~~~~~~~~d~~~~~l~~~~g~~~~~~~ 236 (342)
T COG0673 193 LLGSPEPVSVSAKARNSPPGEAGVDDSASAILRFENGVLAVSWA 236 (342)
T ss_pred HcCCcchhheeeecccCCCCcccccceEEEEEEecCCceEEEEE
Confidence 9998 577777777633 4578888998866655543
No 15
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.78 E-value=0.00036 Score=56.41 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=72.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecH
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~ 157 (353)
||+|+|. |++|+.-+.-+.+.+++++|+|+. ..+-+...+.+++|+.+ ...
T Consensus 2 ~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~-d~~~~~~~~~~~~~~~~--~~~------------------------- 52 (120)
T PF01408_consen 2 RVGIIGA-GSIGRRHLRALLRSSPDFEVVAVC-DPDPERAEAFAEKYGIP--VYT------------------------- 52 (120)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTTTEEEEEEE-CSSHHHHHHHHHHTTSE--EES-------------------------
T ss_pred EEEEECC-cHHHHHHHHHHHhcCCCcEEEEEE-eCCHHHHHHHHHHhccc--chh-------------------------
Confidence 7999998 999999999999888889999985 55777777777777655 221
Q ss_pred HHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEee
Q 018592 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (353)
Q Consensus 158 ~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaL 197 (353)
.+.++.+.+++|.|+.+..--.-...+..++++||.|.+
T Consensus 53 -~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 53 -DLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp -SHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEE
T ss_pred -HHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEE
Confidence 134555656899999999999999999999999997765
No 16
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.67 E-value=0.00028 Score=69.32 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=85.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC--------CceEEEEEeecC---------CHHHHHHHHHhhCCCEEEEeCccchHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGS---------NITLLADQVKRFKPQVVAVRNESLLDE 139 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~p--------d~F~VvaLaags---------Nv~lL~~Q~~eFkPk~V~i~de~~~~~ 139 (353)
-+|+|+| .|.||+.+++++.++. -+++|++++-.+ +++.+.+..+++..-. .+.+
T Consensus 3 i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~-~~~~------ 74 (336)
T PRK08374 3 VKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS-NWGN------ 74 (336)
T ss_pred eEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh-hccc------
Confidence 4799999 7999999999998743 358899987432 2222222222221100 0000
Q ss_pred HHHHhhcCCCCcEEEecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCC
Q 018592 140 IKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI 219 (353)
Q Consensus 140 l~~~l~~~~~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~ 219 (353)
+...+ .-...++....++|+||+.+.+-..-.-...++++||.|-.|||..+-.-++-+.++|++++.
T Consensus 75 --------~~~~~----~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~ 142 (336)
T PRK08374 75 --------DYEVY----NFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNL 142 (336)
T ss_pred --------ccccc----CCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCC
Confidence 00000 003456666568999999997766666677899999999999999888888889999999998
Q ss_pred eEe
Q 018592 220 KIL 222 (353)
Q Consensus 220 ~Il 222 (353)
+++
T Consensus 143 ~~~ 145 (336)
T PRK08374 143 PYL 145 (336)
T ss_pred eEE
Confidence 876
No 17
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.62 E-value=0.00011 Score=73.14 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=80.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC--------CceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 148 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~p--------d~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~ 148 (353)
-+|+|+| .|.||+..++++.++. -+++|++++. ++..++.+- -+.++. .+........+.+.+.
T Consensus 3 i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~-~~~~~~~~~--gi~~~~-~l~~~~~~~~~~~~~~--- 74 (346)
T PRK06813 3 IKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLG-RNVAIHNED--GLSIHH-LLRYGGGSCAIEKYIE--- 74 (346)
T ss_pred eEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEe-cchhhcccc--CCChhh-hhhccccccchhhhhc---
Confidence 4799999 8999999999997654 3588998864 343332210 011000 0000000000011110
Q ss_pred CCcEEEecHHHHHHHh-cCCCCcEEEEec----cC-ccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEe
Q 018592 149 EKPEILAGEQGVIEAA-RHPDAVTVVTGI----VG-CAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL 222 (353)
Q Consensus 149 ~~~~v~~G~~gl~~~a-~~~~~D~Vv~AI----vG-~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~Il 222 (353)
. -..++. ...+.|+||... .| -.+.....+|+++||.|--|||.-+-.-++-++++|+++++.++
T Consensus 75 -------~--~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~ 145 (346)
T PRK06813 75 -------H--HPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR 145 (346)
T ss_pred -------c--ChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence 0 001222 233689999984 22 44555667899999999999999999999999999999998774
No 18
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.56 E-value=0.00063 Score=67.08 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=100.6
Q ss_pred eEEEEecCChHhHHHHHHHHhC------CCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCc
Q 018592 78 PISVLGSTGSIGTQTLDIVAEH------EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~------pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~ 151 (353)
||+|+| -|.||+.+++++.+. ...++|++++..+ -.+ ++|+-+ ..+++.+.... + ..
T Consensus 2 rVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~-g~l-------~~~~Gl------dl~~l~~~~~~-g-~l 64 (326)
T PRK06392 2 RISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK-LSY-------YNERGL------DIGKIISYKEK-G-RL 64 (326)
T ss_pred EEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC-Ccc-------cCCcCC------ChHHHHHHHhc-C-cc
Confidence 699999 699999999999874 3578999987543 111 111110 01111111110 0 00
Q ss_pred EEEecHH--HHHHHhcCCCCcEEEEeccCc-c---CcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEe---
Q 018592 152 EILAGEQ--GVIEAARHPDAVTVVTGIVGC-A---GLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL--- 222 (353)
Q Consensus 152 ~v~~G~~--gl~~~a~~~~~D~Vv~AIvG~-a---GL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~Il--- 222 (353)
.-+ ..+ .+.++.. .++|+||.+..+. . +..-...|+++||.|..|||--|...++-++++|+++++++.
T Consensus 65 ~~~-~~~~~~~~~ll~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~ea 142 (326)
T PRK06392 65 EEI-DYEKIKFDEIFE-IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEA 142 (326)
T ss_pred ccC-CCCcCCHHHHhc-CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEee
Confidence 000 001 2344443 5899999998643 2 445557899999999999999998888999999999988774
Q ss_pred ------ecCCchhHHHHhhcCCCCCCcceEEEEecCCcCCCCChhhh-hcCCHHHHhc
Q 018592 223 ------PADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKL-KEVKVADALK 273 (353)
Q Consensus 223 ------PVDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~l-~~vT~~~ALk 273 (353)
||=+ .+-.+|.|.+...|+.|+ ||= -++=+++| +..+.+|||+
T Consensus 143 tV~~g~Pii~---~~~~~~~g~~i~~i~Gil---nGT--~nyIl~~m~~g~~f~~al~ 192 (326)
T PRK06392 143 TVAGGVPLFS---LRDYSTLPSRIKNFRGIV---SST--INYVIRQEANGRGFLDVVK 192 (326)
T ss_pred eeeeccchhh---hhhhhcccCCEEEEEEEE---eCh--HHHHHhhccCCCCHHHHHH
Confidence 6533 443345565433343332 211 00112233 5777777775
No 19
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.53 E-value=0.0011 Score=67.27 Aligned_cols=216 Identities=20% Similarity=0.207 Sum_probs=136.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEe-CccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVR-NESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~-de~~~~~l~~~l~~~~~~~~v~ 154 (353)
|++|.|+|| |-||+.+..-+.++-| ++|.. |.++.+++.+......++.=++. |.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~i--AdRs~~~~~~i~~~~~~~v~~~~vD~-------------------- 56 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTI--ADRSKEKCARIAELIGGKVEALQVDA-------------------- 56 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEE--EeCCHHHHHHHHhhccccceeEEecc--------------------
Confidence 578999999 9999999999999877 88865 45677777776665544221111 11
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc-EeeecccceeecccchhHHhhhcCCeEee---cCCchhH
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD-IALANKETLIAGGPFVLPLAHKHNIKILP---ADSEHSA 230 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~-IaLANKESLV~aG~li~~~a~~~~~~IlP---VDSEHsA 230 (353)
.+.+++.++.+. .|+|++++.++-++.-.-+|+++|.+ |=++|.|--. +.+.+.|++.|+.++| +|-=-+-
T Consensus 57 ~d~~al~~li~~--~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~---~~~~~~a~~Agit~v~~~G~dPGi~n 131 (389)
T COG1748 57 ADVDALVALIKD--FDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPP---WKLDEEAKKAGITAVLGCGFDPGITN 131 (389)
T ss_pred cChHHHHHHHhc--CCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchh---hhhhHHHHHcCeEEEcccCcCcchHH
Confidence 134566777654 59999999999999999999999988 6688888772 6678889999988887 3332222
Q ss_pred HHHhh--cCCCCCCcceEEEEecCCcCCC-CChhhhhcCCHHH---HhcCC--CCCCCCccceecccccchhHHHHHhhh
Q 018592 231 IFQCI--QGLPEGALRRIILTASGGAFRD-WPVEKLKEVKVAD---ALKHP--NWSMGKKITVDSATLFNKGLEVIEAHY 302 (353)
Q Consensus 231 IfQ~L--~g~~~~~v~kIiLTASGGPFr~-~~~e~l~~vT~~~---ALkHP--nW~MG~KITIDSATmmNKgLEvIEA~~ 302 (353)
+|--- +... ++++.|-+=-=|+|=+. -|+.-=-+-.++. .+.-| -|.-|+-++||+ ||..| -+
T Consensus 132 v~a~~a~~~~~-~~i~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~~~p~~~~~~Gk~~~v~~-------~~~~~-~~ 202 (389)
T COG1748 132 VLAAYAAKELF-DEIESIDIYVGGLGEHGDNPLGYATTWSPEINLREYTRPARYWENGKWVEVDP-------LEERE-VF 202 (389)
T ss_pred HHHHHHHHHhh-ccccEEEEEEecCCCCCCCCccceeeecHHHhHHHhcCceEEEeCCEEEEecC-------ccccc-cc
Confidence 22111 1111 15777766666666554 1111111222332 23344 377888888876 45555 22
Q ss_pred hcCC-CCCceEEEEcCCcceEEEEEecCCc
Q 018592 303 LFGA-EYDNIEIIIHPQSIIHSMVETQVLL 331 (353)
Q Consensus 303 LF~i-~~d~IevvIHPqSiIHsmVef~DGs 331 (353)
-|.. .+-+....-|++ .|+++++.+|.
T Consensus 203 ~~~~~G~~~~y~~~~~e--l~sL~~~i~~~ 230 (389)
T COG1748 203 EFPVIGYGDVYAFYHDE--LRSLVKTIPGV 230 (389)
T ss_pred ccCCCCceeEEecCCcc--HHHHHHhCccc
Confidence 2222 233334444444 57888888765
No 20
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.49 E-value=0.0024 Score=60.55 Aligned_cols=145 Identities=18% Similarity=0.148 Sum_probs=95.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.||+|+| .|.||+....-+.+.+..++++++. .+|.+...+.++++.++ ++
T Consensus 2 mrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~-d~~~~~a~~~a~~~~~~-------------------------~~-- 52 (265)
T PRK13304 2 LKIGIVG-CGAIASLITKAILSGRINAELYAFY-DRNLEKAENLASKTGAK-------------------------AC-- 52 (265)
T ss_pred CEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEE-CCCHHHHHHHHHhcCCe-------------------------eE--
Confidence 5799999 5999999888888764369998875 56666665555544321 11
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceee--cccchhHHhhhcCCeEeecCCchhHHHHh
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIA--GGPFVLPLAHKHNIKILPADSEHSAIFQC 234 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~--aG~li~~~a~~~~~~IlPVDSEHsAIfQ~ 234 (353)
+.+.++. .++|+|+.+..-.+-..-...++++||.+....-..+.- -..-+.++|+++|.++.. +|---...+.
T Consensus 53 -~~~~ell--~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v-~sga~~g~d~ 128 (265)
T PRK13304 53 -LSIDELV--EDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYL-PSGAIVGLDG 128 (265)
T ss_pred -CCHHHHh--cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEE-eCchHHhHHH
Confidence 1234444 468999998655555555678999999987633222211 123566788999988774 5533443588
Q ss_pred hcCCCCCCcceEEEEecCCc
Q 018592 235 IQGLPEGALRRIILTASGGA 254 (353)
Q Consensus 235 L~g~~~~~v~kIiLTASGGP 254 (353)
|+......++.+.+|..--|
T Consensus 129 i~a~~~G~i~~V~~~~~k~p 148 (265)
T PRK13304 129 IKAASLGEIKSVTLTTRKPP 148 (265)
T ss_pred HHHHhcCCccEEEEEEecCh
Confidence 87555667888888876555
No 21
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.39 E-value=0.0065 Score=68.38 Aligned_cols=194 Identities=18% Similarity=0.214 Sum_probs=126.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceE------------EEEEeecCCHHHHHHHHHhh-CCCEEEEeCccchHHHH
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFR------------VVALAAGSNITLLADQVKRF-KPQVVAVRNESLLDEIK 141 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~------------VvaLaagsNv~lL~~Q~~eF-kPk~V~i~de~~~~~l~ 141 (353)
.+|||+|+|| |.||....+.+.++|+ ++ +|++ |..|.+.+.+.++.+ +.+.+.+ |
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~-~~~~~~~~~~~~~~lV~V-aD~~~~~a~~la~~~~~~~~v~l-D-------- 635 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKT-ISYYGDDSEEPTDVHVIV-ASLYLKDAKETVEGIENAEAVQL-D-------- 635 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcC-ccccccccccccccEEEE-ECCCHHHHHHHHHhcCCCceEEe-e--------
Confidence 4789999998 9999999999998876 33 3333 455666655555554 2222222 1
Q ss_pred HHhhcCCCCcEEEecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeE
Q 018592 142 EALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI 221 (353)
Q Consensus 142 ~~l~~~~~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~I 221 (353)
+...+.+.++.+ ++|.|++++.......-..+|+++||.+.-+. ..+..-.-+.+.|++.|+.+
T Consensus 636 ------------v~D~e~L~~~v~--~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~ 699 (1042)
T PLN02819 636 ------------VSDSESLLKYVS--QVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITI 699 (1042)
T ss_pred ------------cCCHHHHHHhhc--CCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEE
Confidence 122344444443 49999999999999999999999999998774 33445556678899999999
Q ss_pred ee---cCCchhH--HHHhhcCC--CCCCcceEEEEecCCc---CCCCChhhhhcCCHHHHhc---CC--CCCCCCcccee
Q 018592 222 LP---ADSEHSA--IFQCIQGL--PEGALRRIILTASGGA---FRDWPVEKLKEVKVADALK---HP--NWSMGKKITVD 286 (353)
Q Consensus 222 lP---VDSEHsA--IfQ~L~g~--~~~~v~kIiLTASGGP---Fr~~~~e~l~~vT~~~ALk---HP--nW~MG~KITID 286 (353)
+| .|.-... .-+++... ....|..+....=|=| +-+=|+.---.-+|+.+|+ .| -|.-|+.++||
T Consensus 700 m~e~GlDPGid~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~~npa~~i~~G~~~~V~ 779 (1042)
T PLN02819 700 LCEMGLDPGIDHMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAGQNPAVYKSNGQIIHVD 779 (1042)
T ss_pred EECCccCHHHHHHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHhcCcceeeECCEEEEec
Confidence 87 4555444 44555432 2345666666555545 2333333223344444433 34 37789999999
Q ss_pred cccccchhHH
Q 018592 287 SATLFNKGLE 296 (353)
Q Consensus 287 SATmmNKgLE 296 (353)
...||...-+
T Consensus 780 ~~~l~~~~~~ 789 (1042)
T PLN02819 780 GENLFASAVR 789 (1042)
T ss_pred chhhhhhccc
Confidence 9887766544
No 22
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.20 E-value=0.00071 Score=56.48 Aligned_cols=35 Identities=40% Similarity=0.768 Sum_probs=33.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsN 113 (353)
||+|+|+||.+|+..++.+.+||+ |+++.+..+++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-FELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-EEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-ccEEEeeeecc
Confidence 699999999999999999999885 99999999888
No 23
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.18 E-value=0.0024 Score=63.52 Aligned_cols=127 Identities=18% Similarity=0.186 Sum_probs=89.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
+.||+|+|+ |+ |..-++.+++.|++++++|+.. ++.+...+.+++|.... |
T Consensus 3 ~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d-~~~erA~~~A~~~gi~~--------y------------------ 53 (343)
T TIGR01761 3 VQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILA-QGSERSRALAHRLGVPL--------Y------------------ 53 (343)
T ss_pred CcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEc-CCHHHHHHHHHHhCCCc--------c------------------
Confidence 578999999 75 9999999999887899999876 57888888888887431 1
Q ss_pred cHHHHHHHhcCCCCcEEEE--eccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEeecCCchhHHHH
Q 018592 156 GEQGVIEAARHPDAVTVVT--GIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 233 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~--AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQ 233 (353)
..+.++...+++|.|.. +..+..+-.-+.+|+++||.|.. =|=.-..-+.-+.++|+++|..+. | ..++--++
T Consensus 54 --~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~-EKPla~~Ea~el~~~A~~~g~~l~-v-~~f~p~~~ 128 (343)
T TIGR01761 54 --CEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQ-EHPLHPRDIQDLLRLAERQGRRYL-V-NTFYPHLP 128 (343)
T ss_pred --CCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEE-cCCCCHHHHHHHHHHHHHcCCEEE-E-EecCHHHH
Confidence 12344555566777776 33577889999999999998763 121112335567788888888766 3 34555555
Q ss_pred hhc
Q 018592 234 CIQ 236 (353)
Q Consensus 234 ~L~ 236 (353)
.++
T Consensus 129 ~vr 131 (343)
T TIGR01761 129 AVR 131 (343)
T ss_pred HHH
Confidence 554
No 24
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.17 E-value=0.0061 Score=59.44 Aligned_cols=159 Identities=20% Similarity=0.279 Sum_probs=91.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags-Nv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.||+|+|+ |.||+..+.-+.+.+ ++++++++... +.+.+ +.++++.-. ..+
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~~-~~elvaV~d~d~es~~l-a~A~~~Gi~-------------------------~~~ 53 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSE-HLEMVAMVGIDPESDGL-ARARELGVK-------------------------TSA 53 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhCC-CcEEEEEEeCCcccHHH-HHHHHCCCC-------------------------EEE
Confidence 47999996 999998865555544 69999987542 11222 234444321 111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHh------hhcCCeEeec-CCch
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA------HKHNIKILPA-DSEH 228 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a------~~~~~~IlPV-DSEH 228 (353)
++..++.+++++|.|+.+.....-..-...|+++||.+. -+|-.- -|||+-+-. ...+.+++-. ..-.
T Consensus 54 --~~~e~ll~~~dIDaV~iaTp~~~H~e~a~~al~aGk~VI-dekPa~--~~plvvp~VN~~~~~~~~~~~iv~c~~~at 128 (285)
T TIGR03215 54 --EGVDGLLANPDIDIVFDATSAKAHARHARLLAELGKIVI-DLTPAA--IGPYVVPAVNLDEHLDAPNVNMVTCGGQAT 128 (285)
T ss_pred --CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCEEE-ECCccc--cCCccCCCcCHHHHhcCcCCCEEEcCcHHH
Confidence 123444556789999999999999999999999999874 333333 245543311 1122333322 2222
Q ss_pred hHHHHhhcCC-CCC--CcceEEEEecCCcCCCCChhhhhcCCH
Q 018592 229 SAIFQCIQGL-PEG--ALRRIILTASGGAFRDWPVEKLKEVKV 268 (353)
Q Consensus 229 sAIfQ~L~g~-~~~--~v~kIiLTASGGPFr~~~~e~l~~vT~ 268 (353)
..+...|+-. +.. .|..-+-..|+||...--.|||..-|-
T Consensus 129 ip~~~al~r~~d~~~~~iv~ti~s~S~g~g~r~~idel~~~t~ 171 (285)
T TIGR03215 129 IPIVAAISRVAPVHYAEIVASIASRSAGPGTRANIDEFTETTS 171 (285)
T ss_pred HHHHHHHHHhhccccEEEEEEEEeeccCCCchhHHHHHHHHHH
Confidence 3333333211 111 222334667899965566677775443
No 25
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.04 E-value=0.007 Score=59.23 Aligned_cols=186 Identities=18% Similarity=0.132 Sum_probs=103.3
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC-CCEEEEe-CccchHHHHHHhhcCCCCcEEEec
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-PQVVAVR-NESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk-Pk~V~i~-de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
|.|||+ |.+|+.+++.+.++++..+| +.+++|.+++.+.++++. ++.-.+. |.. .
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v--~va~r~~~~~~~~~~~~~~~~~~~~~~d~~--------------------~ 57 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEV--TVADRNPEKAERLAEKLLGDRVEAVQVDVN--------------------D 57 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EE--EEEESSHHHHHHHHT--TTTTEEEEE--TT--------------------T
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcE--EEEECCHHHHHHHHhhccccceeEEEEecC--------------------C
Confidence 789999 99999999999998653233 346789999988887642 3332221 111 2
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccce-eecccchhHHhhhcCCeEee---cCC---chh
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL-IAGGPFVLPLAHKHNIKILP---ADS---EHS 229 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESL-V~aG~li~~~a~~~~~~IlP---VDS---EHs 229 (353)
.+.|.++++. .|+|||+...+.+..-..+|+++|....= -+. ...=.-+.+.+++.|..+++ .|+ ..-
T Consensus 58 ~~~l~~~~~~--~dvVin~~gp~~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~ 132 (386)
T PF03435_consen 58 PESLAELLRG--CDVVINCAGPFFGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLL 132 (386)
T ss_dssp HHHHHHHHTT--SSEEEE-SSGGGHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHH
T ss_pred HHHHHHHHhc--CCEEEECCccchhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHH
Confidence 3456666654 69999999888888889999999988554 111 11112234567778888775 333 222
Q ss_pred HH--HHhhcCCCCCCcceEEEEecCCcCCCCChhh---hhcCCHHHHhcC-----CCCCCCCccceecccccch
Q 018592 230 AI--FQCIQGLPEGALRRIILTASGGAFRDWPVEK---LKEVKVADALKH-----PNWSMGKKITVDSATLFNK 293 (353)
Q Consensus 230 AI--fQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~---l~~vT~~~ALkH-----PnW~MG~KITIDSATmmNK 293 (353)
|- .|.|.+ ....++.+.+...|-|.-.++... --.-+++..|.. ..|.-|+.+.++..+...+
T Consensus 133 a~~~~~~~~~-~~~~v~~~~~~~g~~~~p~~~~~~~~~~~~ws~~~~l~e~~~~~~~~~~G~~~~v~~~~~~~~ 205 (386)
T PF03435_consen 133 ARYAADELDA-EGDEVESVDIYVGGLPAPEAPDNPLGYKFTWSPEGVLEEYSPPARVYRDGKWVEVPPFSEEER 205 (386)
T ss_dssp HHHHHHHHHH-TTHEEEEEEEEEEEEEEGCG--TTTSEEBSS-HHHHHHHHCS-EEEEETTEEEEEETTTTCCC
T ss_pred HHHHHHHhhh-hcccceEEEEEEccccCCCCCCCCcccceeeeehhhHHhhcccceEeeCCEEEEecCccccce
Confidence 22 122221 123577777655555111111111 112233333332 2577888888887765544
No 26
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=96.96 E-value=0.0037 Score=68.48 Aligned_cols=127 Identities=16% Similarity=0.087 Sum_probs=82.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC--------CceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 148 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~p--------d~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~ 148 (353)
-+|+|+| .|.||+..++++.++. -+++|++++. ++-.++ +|+-+ | ...+.+.+.+..
T Consensus 459 i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~-s~~~~~-------~~~gi---~---~~~~~~~~~~~~ 523 (810)
T PRK09466 459 IGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD-SRRSLL-------NYDGL---D---ASRALAFFDDEA 523 (810)
T ss_pred EEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe-CCcccc-------CccCC---C---HHHHHhhHHhhc
Confidence 4899999 7999999999997754 3588999864 332211 12111 1 111221111111
Q ss_pred CCcEEEecHHHHHHHhcCCC--CcEEEEeccCccCcHHHHHHHHcCCcEeeecccc---eeecccchhHHhhhcCCeEe
Q 018592 149 EKPEILAGEQGVIEAARHPD--AVTVVTGIVGCAGLKPTVAAIEAGKDIALANKET---LIAGGPFVLPLAHKHNIKIL 222 (353)
Q Consensus 149 ~~~~v~~G~~gl~~~a~~~~--~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKES---LV~aG~li~~~a~~~~~~Il 222 (353)
.. ...+.+.+.....+ .++||....|-........|+++||.|-.|||.. ...-++-++++|+++++.++
T Consensus 524 ~~----~~~~~~~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~ 598 (810)
T PRK09466 524 VE----WDEESLFLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWL 598 (810)
T ss_pred CC----ccHHHHHHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEE
Confidence 11 12344555554333 4699999988766666679999999999999984 34677788899999988753
No 27
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.95 E-value=0.0067 Score=59.87 Aligned_cols=110 Identities=20% Similarity=0.177 Sum_probs=72.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
|.||+|.|. |.||+..++.+.++| .|+|+|+... +.+.....++++.-+ +....+...+ .+.+ .+..+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~-d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~----~~~~--~~i~V~- 69 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQP-DMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREK----AFEE--AGIPVA- 69 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCC-CcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccc----cccC--CceEEc-
Confidence 458999999 999999999999876 5999999874 456666666654322 1111111111 0111 122232
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK 200 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANK 200 (353)
|. +.++. .++|+|+.+.....+..-...++++||++..-.-
T Consensus 70 ~~--~~el~--~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 70 GT--IEDLL--EKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred CC--hhHhh--ccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 21 33343 3699999999999999999999999988766654
No 28
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.79 E-value=0.02 Score=58.41 Aligned_cols=154 Identities=20% Similarity=0.276 Sum_probs=108.6
Q ss_pred CCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh-hCCCEEEEeCccchHHHHHHhhcCCCCc
Q 018592 73 WDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 73 ~~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e-FkPk~V~i~de~~~~~l~~~l~~~~~~~ 151 (353)
-..|-||.++|| |.-|+-.+.-+..-| .|+|+|++. .|++...+..++ +.|+.-++ +.....++..++.. + +
T Consensus 14 ~G~PiRVGlIGA-G~mG~~ivtQi~~m~-Gm~vvaisd-~~~~~ak~A~~~ag~~~~~~~-e~~~~s~~a~Ai~a-G-K- 86 (438)
T COG4091 14 EGKPIRVGLIGA-GEMGTGIVTQIASMP-GMEVVAISD-RNLDAAKRAYDRAGGPKIEAV-EADDASKMADAIEA-G-K- 86 (438)
T ss_pred cCCceEEEEecc-cccchHHHHHHhhcC-CceEEEEec-ccchHHHHHHHHhcCCccccc-ccchhhHHHHHHhc-C-c-
Confidence 366889999997 888998888888776 599999885 578877777764 44554333 23334455555542 1 1
Q ss_pred EEEecHHHHHHHhcCCCCcEEEEeccCc--cCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEe-ecCCch
Q 018592 152 EILAGEQGVIEAARHPDAVTVVTGIVGC--AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL-PADSEH 228 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~~~D~Vv~AIvG~--aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~Il-PVDSEH 228 (353)
-.+.++ ..++...+.+|+||.| .|. .|-+-.+.||.+||.+-+-|=|.=|.=|+++++.|.+.|+-.- ----|-
T Consensus 87 i~vT~D--~~~i~~~~~IdvIIdA-TG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP 163 (438)
T COG4091 87 IAVTDD--AELIIANDLIDVIIDA-TGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEP 163 (438)
T ss_pred EEEecc--hhhhhcCCcceEEEEc-CCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCc
Confidence 233333 3445667889999988 554 4567789999999999999999999999999999998875332 223456
Q ss_pred hHHHHhhc
Q 018592 229 SAIFQCIQ 236 (353)
Q Consensus 229 sAIfQ~L~ 236 (353)
+++..+..
T Consensus 164 ~~~mEL~e 171 (438)
T COG4091 164 SSCMELYE 171 (438)
T ss_pred HHHHHHHH
Confidence 66655543
No 29
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.79 E-value=0.0066 Score=54.49 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=60.7
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec--
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG-- 156 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G-- 156 (353)
|+|+|+||.+|.+.++.+.+ ..|+|.+|+=..+ ....++.+.-.. .++..|-...+.|.++|.+.+. +-...+
T Consensus 1 I~V~GatG~~G~~v~~~L~~--~~~~V~~l~R~~~-~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~-v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS--AGFSVRALVRDPS-SDRAQQLQALGA-EVVEADYDDPESLVAALKGVDA-VFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH--TTGCEEEEESSSH-HHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSE-EEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHh--CCCCcEEEEeccc-hhhhhhhhcccc-eEeecccCCHHHHHHHHcCCce-EEeecCcc
Confidence 78999999999999999998 5799999985543 334444444444 4556777767777777765431 112222
Q ss_pred -------HHHHHHHhcCCCCcEEEEeccCccC
Q 018592 157 -------EQGVIEAARHPDAVTVVTGIVGCAG 181 (353)
Q Consensus 157 -------~~gl~~~a~~~~~D~Vv~AIvG~aG 181 (353)
...+.+.|....++.+|-.-.|...
T Consensus 76 ~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 76 HPSELEQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred hhhhhhhhhhHHHhhhccccceEEEEEecccc
Confidence 1235555555556666655445444
No 30
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.78 E-value=0.0021 Score=63.17 Aligned_cols=37 Identities=22% Similarity=0.485 Sum_probs=32.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsN 113 (353)
|+||+|+|+||.+|+..++.+.++|+ +++++++.++.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~-~elv~v~~~~~ 38 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE-VEIVAVTSRSS 38 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC-ceEEEEECccc
Confidence 47899999999999999999999875 99999987543
No 31
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.70 E-value=0.003 Score=63.09 Aligned_cols=120 Identities=26% Similarity=0.300 Sum_probs=82.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCC--------ceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 148 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd--------~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~ 148 (353)
-+|+|+| .|-||+..+++++++.+ .|+|++++.++ ..+.. .+.... +..++...
T Consensus 4 v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~-~~~~~----~~~~~~--------~~~~~~~~---- 65 (333)
T COG0460 4 VKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRD-GSLVR----DLDLLN--------AEVWTTDG---- 65 (333)
T ss_pred EEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEecc-chhcc----cccccc--------hhhheecc----
Confidence 4799998 58899999999998754 67777776543 22211 111100 00111100
Q ss_pred CCcEEEecHHHHHHHhcCCCCcEEEEeccC-ccCcH---HHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeE
Q 018592 149 EKPEILAGEQGVIEAARHPDAVTVVTGIVG-CAGLK---PTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI 221 (353)
Q Consensus 149 ~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG-~aGL~---pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~I 221 (353)
..- .+ .+++...++|+||.++.| +..=+ -...|+++||.|.-|||--|-.-|+-|+++|+++|+.+
T Consensus 66 ---~~~---~~-~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l 135 (333)
T COG0460 66 ---ALS---LG-DEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKL 135 (333)
T ss_pred ---ccc---cc-HhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeE
Confidence 000 11 345667789999999999 54444 56789999999999999999999999999999998776
No 32
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.70 E-value=0.01 Score=58.56 Aligned_cols=160 Identities=14% Similarity=0.209 Sum_probs=101.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHH-HHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT-LLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~-lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
+.||+|+| ||.||+.-+.-+.+. +.+++++++.. |.+ ...+.+++|.-... +
T Consensus 4 klrVAIIG-tG~IGt~hm~~l~~~-~~velvAVvdi-d~es~gla~A~~~Gi~~~------------------------~ 56 (302)
T PRK08300 4 KLKVAIIG-SGNIGTDLMIKILRS-EHLEPGAMVGI-DPESDGLARARRLGVATS------------------------A 56 (302)
T ss_pred CCeEEEEc-CcHHHHHHHHHHhcC-CCcEEEEEEeC-ChhhHHHHHHHHcCCCcc------------------------c
Confidence 45899999 999999977666665 46999998765 443 22244666542211 1
Q ss_pred ecHHHHHHHhcC---CCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhh------hcCCeEeec-
Q 018592 155 AGEQGVIEAARH---PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAH------KHNIKILPA- 224 (353)
Q Consensus 155 ~G~~gl~~~a~~---~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~------~~~~~IlPV- 224 (353)
+++.++.++ +++|+|+.+-....-.+-...++++||.+ +-||=.. -||++-+... ..+.+++-.
T Consensus 57 ---~~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~eaGk~V-ID~sPA~--~~PlvVP~VN~~~~~~~~~~~iia~p 130 (302)
T PRK08300 57 ---EGIDGLLAMPEFDDIDIVFDATSAGAHVRHAAKLREAGIRA-IDLTPAA--IGPYCVPAVNLDEHLDAPNVNMVTCG 130 (302)
T ss_pred ---CCHHHHHhCcCCCCCCEEEECCCHHHHHHHHHHHHHcCCeE-EECCccc--cCCcccCcCCHHHHhcccCCCEEECc
Confidence 123334444 68999999999988888899999999865 4455444 4677755332 123333311
Q ss_pred CCchhHHHHhhcCCCCCCcceEEE---EecCCcCCCCChhhhhcCCH
Q 018592 225 DSEHSAIFQCIQGLPEGALRRIIL---TASGGAFRDWPVEKLKEVKV 268 (353)
Q Consensus 225 DSEHsAIfQ~L~g~~~~~v~kIiL---TASGGPFr~~~~e~l~~vT~ 268 (353)
..--..+...|.-....+..+|+- ..|=||.+.--.|||..-|-
T Consensus 131 ~~ati~~v~Al~~v~~~~~~eIvat~~s~s~g~gtr~nidE~~~~t~ 177 (302)
T PRK08300 131 GQATIPIVAAVSRVAPVHYAEIVASIASKSAGPGTRANIDEFTETTS 177 (302)
T ss_pred cHHHHHHHHHhcccCcCceeeeeeeehhhccCCcccccHHHHHHHHH
Confidence 222333444444333346777872 25669998888999877554
No 33
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=96.67 E-value=0.01 Score=65.04 Aligned_cols=129 Identities=20% Similarity=0.202 Sum_probs=85.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-------ceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcC
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHED-------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd-------~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~ 147 (353)
.+.+|+|+| .|-||.+.++++.+..+ +++|++++. ++-.+ |+|+-+ | ...+.+.+...
T Consensus 464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~-s~~~~-------~~~~g~---~---~~~~~~~~~~~ 528 (819)
T PRK09436 464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIAN-SRKML-------LDEHGI---D---LDNWREELAEA 528 (819)
T ss_pred ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEc-CCccc-------cCCCCC---C---HHHHHHHHhhc
Confidence 356899999 79999999999976543 577888753 32111 222211 1 12333333221
Q ss_pred CCCcEEEecHHHHHHHhcC--CCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceee---cccchhHHhhhcCCeEe
Q 018592 148 EEKPEILAGEQGVIEAARH--PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIA---GGPFVLPLAHKHNIKIL 222 (353)
Q Consensus 148 ~~~~~v~~G~~gl~~~a~~--~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~---aG~li~~~a~~~~~~Il 222 (353)
. -..+.+.+.+.... .+.|+||....+..-..-...|+++||.|-.|||-.+.. -++-++++|+++++.++
T Consensus 529 ~----~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~ 604 (819)
T PRK09436 529 G----EPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFL 604 (819)
T ss_pred c----CCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEE
Confidence 1 11234555555532 357999999988654555569999999999999998873 67778999999998875
No 34
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.57 E-value=0.0061 Score=57.53 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=75.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
|.||+|+|+||-+|+..++.+.++|+ ++|+++..... +...+. .++ ++.+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~-~elvav~d~~~-~~~~~~-~~~-------------------------~i~~-- 50 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED-LELVAAVDRPG-SPLVGQ-GAL-------------------------GVAI-- 50 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-CEEEEEEecCC-cccccc-CCC-------------------------Cccc--
Confidence 35899999999999999999988765 99999875432 222111 000 0111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEeecCCchhHHHHhh
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQ~L 235 (353)
.+.+.++.+ ++|+|+....-.....-...|+++||.+.+.+=-.-.---..+.+.+++.++-+.|-=|---.+++-|
T Consensus 51 -~~dl~~ll~--~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l 127 (257)
T PRK00048 51 -TDDLEAVLA--DADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKL 127 (257)
T ss_pred -cCCHHHhcc--CCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHH
Confidence 123444443 58999987776677788899999999998764000000011233334444555555545444444433
No 35
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.50 E-value=0.018 Score=54.86 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=62.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.||+|.|++|-+|+..++.+.++| +++++++....+-+...+ ...++... ...++.++.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~-~~elvav~d~~~~~~~~~----------------~~~~~~~~---~~~gv~~~~- 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE-GLQLVAAFERHGSSLQGT----------------DAGELAGI---GKVGVPVTD- 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccccCC----------------CHHHhcCc---CcCCceeeC-
Confidence 479999999999999999999886 599999887554332110 01111000 001122322
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeec
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN 199 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLAN 199 (353)
.+.++ . .++|+||..-.=.+...-...|+++|+.+...-
T Consensus 61 --d~~~l-~-~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigt 99 (266)
T TIGR00036 61 --DLEAV-E-TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGT 99 (266)
T ss_pred --CHHHh-c-CCCCEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 23444 2 458999987655555666788899998887744
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.43 E-value=0.0097 Score=58.72 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=30.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS 112 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags 112 (353)
+||+|+|+||.+|...++.+.+||+ ++++++.+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-~el~~l~~s~ 35 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-VEITYLVSSR 35 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-ceEEEEeccc
Confidence 3799999999999999999999975 8999885433
No 37
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.17 E-value=0.019 Score=49.11 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=30.5
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~ 119 (353)
|.|+|+||.||+..++-+.+.+ ++|.+++ +|-+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~--R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALV--RSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEE--SSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEe--cCchhccc
Confidence 7899999999999999998875 9999998 44444444
No 38
>PLN02700 homoserine dehydrogenase family protein
Probab=96.14 E-value=0.049 Score=55.32 Aligned_cols=56 Identities=25% Similarity=0.185 Sum_probs=46.4
Q ss_pred CCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEe
Q 018592 166 HPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL 222 (353)
Q Consensus 166 ~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~Il 222 (353)
+...+++|+.-.+..-......|+++|+.|..|||--+-..++.++++++ ++++++
T Consensus 107 ~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-~~~~~~ 162 (377)
T PLN02700 107 KSTGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-HPRRIR 162 (377)
T ss_pred ccCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-cCCeEE
Confidence 34569999998886666677789999999999999999999999988885 566654
No 39
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.99 E-value=0.011 Score=59.43 Aligned_cols=39 Identities=31% Similarity=0.544 Sum_probs=34.2
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCH
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI 114 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv 114 (353)
.++||+|+||||.+|...++++.+||+ |+|..++.+++.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~sa 75 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKA 75 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhc
Confidence 556999999999999999999999984 999999876543
No 40
>PRK10206 putative oxidoreductase; Provisional
Probab=95.94 E-value=0.12 Score=50.73 Aligned_cols=200 Identities=18% Similarity=0.237 Sum_probs=118.8
Q ss_pred eeEEEEecCChHhHH-HHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQ-TLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtq-TLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
-||+|+|. |.|+.. -+..+.+.+++++|+|++-. |-+. .+.+++|.-. .++
T Consensus 2 irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~-~~~~-~~~~~~~~~~------------------------~~~- 53 (344)
T PRK10206 2 INCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRR-HAKP-EEQAPIYSHI------------------------HFT- 53 (344)
T ss_pred eEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcC-ChhH-HHHHHhcCCC------------------------ccc-
Confidence 47999997 666654 46766666678999998754 4333 3444444310 011
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccce--eecccchhHHhhhcCCeEee-----cCCch
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL--IAGGPFVLPLAHKHNIKILP-----ADSEH 228 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESL--V~aG~li~~~a~~~~~~IlP-----VDSEH 228 (353)
+.+.++.+.+++|.|+.+..=..=..-+.+|+++||.|.+ -|=-- +.-..-+.+++++++..+.. -+..+
T Consensus 54 --~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~ 130 (344)
T PRK10206 54 --SDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLV-EKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCF 130 (344)
T ss_pred --CCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEE-ecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHH
Confidence 2345666778899999988777777889999999998875 44322 22345567888888877653 23445
Q ss_pred hHHHHhhcCCCCCCcceEEEEecCCcCCCCChhhhhcCCHHHHhcCCCCCCCCccceecccccchhHHHHH-hhhhcCCC
Q 018592 229 SAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHYLFGAE 307 (353)
Q Consensus 229 sAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~l~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIE-A~~LF~i~ 307 (353)
..+-++|+.....+|..+- +.=+.||..+. ..|.+ -+.+.|++-|--.|- +.|||| +
T Consensus 131 ~~~k~li~~g~iG~i~~i~--~~~~~~~~~~~------------~~~~~-------~~gG~l~d~g~H~ld~~~~l~G-~ 188 (344)
T PRK10206 131 LTAKKAIESGKLGEIVEVE--SHFDYYRPVAE------------TKPGL-------PQDGAFYGLGVHTMDQIISLFG-R 188 (344)
T ss_pred HHHHHHHHcCCCCCeEEEE--EEecccCCccc------------cccCC-------CCCceeechhHHHHHHHHHHcC-C
Confidence 5677777654444554433 32222332110 01211 123446666654444 578998 4
Q ss_pred CCceEEEEc-------CCcceEEEEEecCC
Q 018592 308 YDNIEIIIH-------PQSIIHSMVETQVL 330 (353)
Q Consensus 308 ~d~IevvIH-------PqSiIHsmVef~DG 330 (353)
++.+..... .+-..+.+++| +|
T Consensus 189 ~~~v~a~~~~~~~~~~~~d~~~~~l~f-~~ 217 (344)
T PRK10206 189 PDHVAYDIRSLRNKANPDDTFEAQLFY-GD 217 (344)
T ss_pred CeEEEEEeecccCCCCCCceEEEEEEe-CC
Confidence 556655432 23456777888 44
No 41
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.81 E-value=0.15 Score=49.48 Aligned_cols=141 Identities=17% Similarity=0.234 Sum_probs=90.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecH
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~ 157 (353)
+|.|.|. |-||++.++.++..|-+|+.+++ +.++.++..+..+-|.++.+ +
T Consensus 2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v-~D~~~ek~~~~~~~~~~~~~--s------------------------- 52 (255)
T COG1712 2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAV-YDRDEEKAKELEASVGRRCV--S------------------------- 52 (255)
T ss_pred eEEEEec-cHHHHHHHHHHhcCCcceeEEEE-ecCCHHHHHHHHhhcCCCcc--c-------------------------
Confidence 5888986 88999999999999989999885 57788998888888877655 1
Q ss_pred HHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeeccc--chhHHhhhcCCeEeecCCchhHHHHhh
Q 018592 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGP--FVLPLAHKHNIKILPADSEHSAIFQCI 235 (353)
Q Consensus 158 ~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~--li~~~a~~~~~~IlPVDSEHsAIfQ~L 235 (353)
.+.++. .++|++|.+-+=-|=..-...++++|+++....=-.|.-=|- -+..+||.++.++.=.-----+| ..|
T Consensus 53 -~ide~~--~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl-D~l 128 (255)
T COG1712 53 -DIDELI--AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL-DAL 128 (255)
T ss_pred -cHHHHh--hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH-HHH
Confidence 123333 357788877665555566677888888876543222211110 13457777777764221111111 222
Q ss_pred cCCCCCCcceEEEEec
Q 018592 236 QGLPEGALRRIILTAS 251 (353)
Q Consensus 236 ~g~~~~~v~kIiLTAS 251 (353)
..-+...|+.+.||.-
T Consensus 129 ~aar~g~i~~V~lttr 144 (255)
T COG1712 129 AAARVGGIEEVVLTTR 144 (255)
T ss_pred HHhhcCCeeEEEEEee
Confidence 2223467999999973
No 42
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=95.80 E-value=0.11 Score=46.28 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=45.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
.|++.|.|+||.||..+.+-+.+. .++|+.+. ++..+.+.++.++...+...+ .|-...+.+..
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~--G~~vi~~~-r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEA--GADIVGAG-RSEPSETQQQVEALGRRFLSLTADLSDIEAIKA 69 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEc-CchHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence 478999999999999999988875 57887765 445566777777766554433 34444444444
No 43
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.78 E-value=0.02 Score=56.96 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=32.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeecCCH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNI 114 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~--~pd~F~VvaLaagsNv 114 (353)
..+|+|+||||-+|...++++.+ ||. ++|..++..++.
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~-~~l~~laS~~sa 43 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPV-GELYALASEESA 43 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCc-eEEEEEEccCcC
Confidence 34799999999999999999999 885 899999766543
No 44
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.63 E-value=0.031 Score=56.05 Aligned_cols=37 Identities=22% Similarity=0.553 Sum_probs=30.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE---EEEEeecCCH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR---VVALAAGSNI 114 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~---VvaLaagsNv 114 (353)
.+|+|+||||.+|...++++.+||+ |+ +..++..++.
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~-f~v~~l~~~aS~~sa 45 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETK-FNIAEVTLLSSKRSA 45 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCC-CCcccEEEEECcccC
Confidence 4799999999999999999999986 88 6666655443
No 45
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.52 E-value=0.17 Score=45.73 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=52.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-eCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i-~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
++|.|.|+||.||....+-+.++ .++|+.++ +|.+.+.+...+..++...+ .|-...+.+++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~---------- 66 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATG--RRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLA---------- 66 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHH----------
Confidence 46999999999999999988875 57777654 46666666555555444332 34444444444331
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGC 179 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~ 179 (353)
.+.+ ...++|.|+++....
T Consensus 67 ---~~~~--~~~~id~vi~~ag~~ 85 (248)
T PRK10538 67 ---SLPA--EWRNIDVLVNNAGLA 85 (248)
T ss_pred ---HHHH--HcCCCCEEEECCCcc
Confidence 1111 224688998876543
No 46
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.11 Score=45.50 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=31.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~ 121 (353)
+|++.|.|+||+||....+.+.+. ++|+++. +|.+.+.+..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~---~~V~~~~--r~~~~~~~~~ 43 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT---HTLLLGG--RPAERLDELA 43 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh---CCEEEEe--CCHHHHHHHH
Confidence 578999999999999999988865 7787775 4555554433
No 47
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.47 E-value=0.021 Score=56.44 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=41.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh-CCCEEEEeCc
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF-KPQVVAVRNE 134 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF-kPk~V~i~de 134 (353)
+.||+|+||||.+|...++++.+|| .|++++++..+..+. ..--..| +.++|+++-+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp-~~~l~~~~s~~~~~~-~~~~~~~~~~DvvFlalp 59 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRS-DIELLSIPEAKRKDA-AARRELLNAADVAILCLP 59 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCC-CeEEEEEecCCCCcc-cCchhhhcCCCEEEECCC
Confidence 4589999999999999999999999 599999987654332 1111122 4678877543
No 48
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=95.46 E-value=0.043 Score=52.13 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=42.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec----CCHHHHHHHHHhhCCCEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG----SNITLLADQVKRFKPQVVAVR 132 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag----sNv~lL~~Q~~eFkPk~V~i~ 132 (353)
+||.|+|+||.||......+.+ ..++|+++.-. .+.+.+.+..++++|++|+-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~--~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE--RGYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT--TSEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHhh--CCCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEecc
Confidence 4799999999999999999887 36899998422 366888888999999998754
No 49
>PLN02778 3,5-epimerase/4-reductase
Probab=95.42 E-value=0.051 Score=51.71 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=41.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHHhhCCCEEE
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVA 130 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa-gsNv~lL~~Q~~eFkPk~V~ 130 (353)
+||.|.|+||+||....+-+.+. .++|+.... -.+.+.+....++.+|++|+
T Consensus 10 ~kiLVtG~tGfiG~~l~~~L~~~--g~~V~~~~~~~~~~~~v~~~l~~~~~D~Vi 62 (298)
T PLN02778 10 LKFLIYGKTGWIGGLLGKLCQEQ--GIDFHYGSGRLENRASLEADIDAVKPTHVF 62 (298)
T ss_pred CeEEEECCCCHHHHHHHHHHHhC--CCEEEEecCccCCHHHHHHHHHhcCCCEEE
Confidence 57999999999999999988876 456765433 34667777778888999987
No 50
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.30 E-value=0.21 Score=45.24 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=45.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE-EeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~-i~de~~~~~l~~ 142 (353)
.|++.|.|+||.||.++.+-+.+. .++|+.+.-+.+.+.+.+...+...+... ..|-...+.++.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 80 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKA--GADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEK 80 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 378999999999999999998875 67887776556677777777665544333 234444444443
No 51
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.17 E-value=0.058 Score=53.51 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=41.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCc
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE 134 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de 134 (353)
||+|+|+||..|...++++.+||+ |+++.+++.++.+.......--+.++|+++-+
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp 58 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRRKDAAERAKLLNAADVAILCLP 58 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccccCcCCHhHhhcCCCEEEECCC
Confidence 699999999999999999999986 99999998876432211100014678777543
No 52
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.15 E-value=0.26 Score=44.58 Aligned_cols=46 Identities=28% Similarity=0.269 Sum_probs=36.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk 125 (353)
||++.|.|+||.||....+-+.+. .++|+.+. +|.+.+.+..++.+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~ 46 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAE--GWRVGAYD--INEAGLAALAAELG 46 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHHhc
Confidence 578999999999999999988875 57788764 67777776666543
No 53
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.25 Score=43.65 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=41.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC--CCEE-EEeCccchHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK--PQVV-AVRNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk--Pk~V-~i~de~~~~~l~~~ 143 (353)
+++.|.|+||.||.....-+.++ .++|+++. +|-+.+.+..++.+ .+.. ...|-...+.+++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~ 72 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE--GYKVAITA--RDQKELEEAAAELNNKGNVLGLAADVRDEADVQRA 72 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEee--CCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHH
Confidence 68999999999999999998875 67887764 56666655555443 2322 22344444445443
No 54
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.32 Score=43.42 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=39.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC--CHHHHHHHHHhhCCCEEE-EeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags--Nv~lL~~Q~~eFkPk~V~-i~de~~~~~l~~ 142 (353)
.|++.|.|+||.||....+-+.+. .++|++++-+. +.+.+.+..+....+... ..|-...+.++.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGA--GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAA 73 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHC--CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 368999999999999999988765 57887764221 223334444443333332 235444444443
No 55
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.10 E-value=0.39 Score=42.17 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=41.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH---HHhhCCCEEEE-eCccchHHHHHH
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKEA 143 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q---~~eFkPk~V~i-~de~~~~~l~~~ 143 (353)
..|++.|.|+||.||....+-+.+. .++|+.++.+ ..+.+.+. .+....++..+ .|-...+.+++.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~--G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQ--GANVVINYAS-SEAGAEALVAEIGALGGKALAVQGDVSDAESVERA 73 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCC-chhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 3478999999999999999998875 6788766543 33333333 33334444443 254444445443
No 56
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.08 E-value=0.28 Score=44.02 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=50.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCC--EEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ--VVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk--~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
|++.|.|+||.||..+.+-+.++ .++|+.+. +|-+.+.+...++.-. .+...|-...+.+++.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~--g~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--------- 78 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEA--GARVHVCD--VSEAALAATAARLPGAKVTATVADVADPAQVERVFD--------- 78 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHH---------
Confidence 78999999999999999998876 56776655 3445555444444222 233345444444444331
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccC
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVG 178 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG 178 (353)
.+.+.. .++|.|+.....
T Consensus 79 ----~~~~~~--~~~d~vi~~ag~ 96 (264)
T PRK12829 79 ----TAVERF--GGLDVLVNNAGI 96 (264)
T ss_pred ----HHHHHh--CCCCEEEECCCC
Confidence 112222 368999987543
No 57
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=95.03 E-value=0.32 Score=46.04 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=67.9
Q ss_pred HHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeec-----ccchhHHhhhcCCeEeecCCchhHHHHh
Q 018592 160 VIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG-----GPFVLPLAHKHNIKILPADSEHSAIFQC 234 (353)
Q Consensus 160 l~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~a-----G~li~~~a~~~~~~IlPVDSEHsAIfQ~ 234 (353)
+.+++. +++|.|+.+-.=.+=-.-...++++||.+.. |+..+- ..-+.+.++++|.++..- |-+-+.++.
T Consensus 30 ~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~---~s~gAlad~e~~~~l~~aA~~~g~~l~i~-sGai~g~d~ 104 (229)
T TIGR03855 30 FDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLI---MSVGALADRELRERLREVARSSGRKVYIP-SGAIGGLDA 104 (229)
T ss_pred HHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEE---ECCcccCCHHHHHHHHHHHHhcCCEEEEC-hHHHHHHHH
Confidence 344444 4699999987777777778999999999988 665432 344677888998887644 777777889
Q ss_pred hcCCCCCCcceEEEEecCCc
Q 018592 235 IQGLPEGALRRIILTASGGA 254 (353)
Q Consensus 235 L~g~~~~~v~kIiLTASGGP 254 (353)
|+..+...++.+.+|..=.|
T Consensus 105 l~a~~ig~~~~V~i~~~k~p 124 (229)
T TIGR03855 105 LKAASLGRIERVVLTTTKPP 124 (229)
T ss_pred HHhcccCCceEEEEEEecCh
Confidence 98777788999999976444
No 58
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.94 E-value=0.077 Score=48.54 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=41.5
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeec----CCHHHHHHHHHhhCCCEEEE
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG----SNITLLADQVKRFKPQVVAV 131 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag----sNv~lL~~Q~~eFkPk~V~i 131 (353)
||.|+|+||+||+...+-+.+. .++|++++-. .|.+.+.+.++..+|++|+-
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~--g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE--GRVVVALTSSQLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEE
Confidence 5899999999999999988875 6888887532 25567777777778898874
No 59
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.23 Score=44.73 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=43.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 144 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l 144 (353)
|+++.|.|+||.||.+..+-+.+. .++|+.+ .+|.+.+.+...+...-.....|-...+.+++.+
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 65 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQ--GWQVIAC--GRNQSVLDELHTQSANIFTLAFDVTDHPGTKAAL 65 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhC--CCEEEEE--ECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHH
Confidence 478999999999999988888765 5777764 3577777666554322222334555555555543
No 60
>PRK09186 flagellin modification protein A; Provisional
Probab=94.87 E-value=0.28 Score=43.92 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=42.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC-----CCEEE-EeCccchHHHHHHh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-----PQVVA-VRNESLLDEIKEAL 144 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk-----Pk~V~-i~de~~~~~l~~~l 144 (353)
.|++.|.|+||.||....+.+.+. .++|+.+ .++-+.+.+..++.+ ....+ ..|-...+.+.+.+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~--g~~v~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA--GGIVIAA--DIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFL 74 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEE--ecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHH
Confidence 378999999999999999999875 5788776 345555554444432 22323 44555555555443
No 61
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.79 E-value=0.31 Score=42.66 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=31.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~ 121 (353)
.|++.|.|+||+||....+-+.+. .++|++++ +|.+.+.+..
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~ 48 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAAR--GARVALIG--RGAAPLSQTL 48 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHC--CCeEEEEe--CChHhHHHHH
Confidence 468999999999999999988765 67877765 4444444433
No 62
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.79 E-value=0.3 Score=48.62 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=27.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
.++|.|.|+||.||+...+-+.+. .++|++++
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~--G~~V~~l~ 91 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRR--GYNVVAVA 91 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEE
Confidence 457999999999999999988764 68899886
No 63
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.76 E-value=0.21 Score=44.55 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=51.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH---HHHhhCCCEEEE-eCccchHHHHHHhhcCCCCc
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD---QVKRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~---Q~~eFkPk~V~i-~de~~~~~l~~~l~~~~~~~ 151 (353)
.|++.|.|+||.||..+.+-+.++ .++|+.+.. +|-+++.+ +++....+...+ .|....+.++..+.
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~--g~~v~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 74 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEE--GYDIAVNYA-RSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFA------ 74 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcC-CCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH------
Confidence 368999999999999999999886 567765433 44555444 444444444433 45555555554432
Q ss_pred EEEecHHHHHHHhcCCCCcEEEEec
Q 018592 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~~~D~Vv~AI 176 (353)
.+.+ ....+|+|++..
T Consensus 75 -------~~~~--~~~~id~vi~~a 90 (250)
T PRK08063 75 -------QIDE--EFGRLDVFVNNA 90 (250)
T ss_pred -------HHHH--HcCCCCEEEECC
Confidence 1111 124588888874
No 64
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.73 E-value=0.23 Score=48.62 Aligned_cols=96 Identities=20% Similarity=0.328 Sum_probs=64.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCcc-chHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~-~~~~l~~~l~~~~~~~~v~ 154 (353)
-.+|.|.|+||.+|+-++++.+.. .+.+++.+..+ ++.. .++++..+++.-..+. ..+.+++
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~--~k~~-~~~~lGAd~vi~y~~~~~~~~v~~------------ 205 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSS--EKLE-LLKELGADHVINYREEDFVEQVRE------------ 205 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCH--HHHH-HHHhcCCCEEEcCCcccHHHHHHH------------
Confidence 468999999999999999999987 34677766554 5555 8899999998864433 2333333
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEee
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaL 197 (353)
+.....+|+|++. +|-.-+...+.+++.+-++..
T Consensus 206 --------~t~g~gvDvv~D~-vG~~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 206 --------LTGGKGVDVVLDT-VGGDTFAASLAALAPGGRLVS 239 (326)
T ss_pred --------HcCCCCceEEEEC-CCHHHHHHHHHHhccCCEEEE
Confidence 2222357777776 444555556666666655443
No 65
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.73 E-value=0.41 Score=41.96 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=40.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHH---HHHHHHhhCCCEEEE-eCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVAV-RNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~l---L~~Q~~eFkPk~V~i-~de~~~~~l~~~ 143 (353)
+|+|.|.|+||.||.+..+-+.+. .++|+.++ +++-+. +.+..++..++...+ .|-...+.+++.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~--g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 74 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARA--GADVVVHY-RSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAA 74 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe-CCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHH
Confidence 578999999999999999988875 45665544 444443 444444444443332 344444444443
No 66
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.48 Score=43.00 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=35.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
+|++.|.|+||.||++..+.+.+. .++|+.+ .+|.+.+.+...+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ--GATLGLV--ARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHhc
Confidence 468999999999999999999876 5677654 35677777666654
No 67
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.70 E-value=0.34 Score=42.96 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=49.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC--CCE-EEEeCccchHHHHHHhhcCCCCcE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK--PQV-VAVRNESLLDEIKEALANVEEKPE 152 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk--Pk~-V~i~de~~~~~l~~~l~~~~~~~~ 152 (353)
.|++.|.|+||.||.+..+.+.+. .++|+++. +|-+.+.++..+.+ .+. +...|-...+.++..+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 73 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAE--GARVVVTD--RNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVA------- 73 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH-------
Confidence 368999999999999999998876 56776653 44555555554433 222 22334444445544331
Q ss_pred EEecHHHHHHHhcCCCCcEEEEec
Q 018592 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (353)
Q Consensus 153 v~~G~~gl~~~a~~~~~D~Vv~AI 176 (353)
.+. .....+|.|++..
T Consensus 74 ------~~~--~~~~~~d~vi~~a 89 (251)
T PRK07231 74 ------AAL--ERFGSVDILVNNA 89 (251)
T ss_pred ------HHH--HHhCCCCEEEECC
Confidence 111 1234688888875
No 68
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.37 Score=43.58 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=41.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~ 142 (353)
.|+|.|.|+||.||.+..+-+.++ .++|+.+. +|-+.+.+...+++..+ ...|-...+.++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~ 68 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAE--GATVVVGD--IDPEAGKAAADEVGGLF-VPTDVTDEDAVNA 68 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHcCCcE-EEeeCCCHHHHHH
Confidence 367999999999999999998876 57777664 45555555555554433 3334444444444
No 69
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.54 E-value=0.35 Score=43.59 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=40.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh---CCCEEEE-eCccchHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF---kPk~V~i-~de~~~~~l~~~ 143 (353)
|++.|.|+||+||....+-+.+. .++|+.+ .+|-+.+.++..+. .++...+ .|-...+.+++.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~ 77 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQA--GAEVILN--GRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAA 77 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHH
Confidence 67999999999999999988774 6888765 34555554444333 3333332 344444444443
No 70
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.46 E-value=0.44 Score=42.69 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=42.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEEE-EeCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags-Nv~lL~~Q~~eFkPk~V~-i~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||..+...+.++ .++|+.+.-.. ..+.+.+++++..++... ..|-...+.+++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA--GAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHH
Confidence 478999999999999999999876 46777553211 134455555555554433 3455555555544
No 71
>PLN02583 cinnamoyl-CoA reductase
Probab=94.46 E-value=0.26 Score=46.41 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
..|+|.|.|+||.||....+-+.+. .++|+++.-
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~--G~~V~~~~R 38 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSR--GYTVHAAVQ 38 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEEc
Confidence 3568999999999999999988864 689998763
No 72
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=94.43 E-value=0.45 Score=42.46 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=40.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH---HHHhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD---QVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~---Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
+|++.|.|+||.||......+.+. .++|+. +..+|.+.+.+ +++++.++...+ .|-...+.+++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~--g~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAAR--GWSVGI-NYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIA 69 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHC--CCEEEE-EeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHH
Confidence 478999999999999999998875 577754 44566665544 444444444333 34333344443
No 73
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=94.42 E-value=0.13 Score=47.11 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=27.2
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
+|.|.|+||+||...++-+.+....++|+++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 58999999999999999887765458898875
No 74
>PRK06701 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.67 Score=43.63 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=39.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC--HHHHHHHHHhhCCCEEE-EeCccchHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN--ITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsN--v~lL~~Q~~eFkPk~V~-i~de~~~~~l~~~ 143 (353)
|++.|.|+||.||..+..-+.+. .++|+.+..+.+ .+.+.+.++....+... ..|-...+.+.+.
T Consensus 47 k~iLItGasggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 114 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDA 114 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 68999999999999999988876 577765544322 33444444433334333 2344444444443
No 75
>PRK06196 oxidoreductase; Provisional
Probab=94.35 E-value=0.43 Score=45.16 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=41.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~ 142 (353)
.|++.|.|+||.||..+..-+.+. .++|+.+ .+|.+.+.+.+.+.+--.+...|-...+.+++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~--G~~Vv~~--~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~ 88 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQA--GAHVIVP--ARRPDVAREALAGIDGVEVVMLDLADLESVRA 88 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhhhCeEEEccCCCHHHHHH
Confidence 478999999999999999988875 5777764 35677776665554311122234444444443
No 76
>PRK05717 oxidoreductase; Validated
Probab=94.28 E-value=0.55 Score=42.45 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=40.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE-EeCccchHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~-i~de~~~~~l~~ 142 (353)
|++.|.|+||+||..+..-+.+. .++|+.+. ++.+.+.+.++++..+... -.|-...+.+++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~--g~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAE--GWQVVLAD--LDRERGSKVAKALGENAWFIAMDVADEAQVAA 73 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHc--CCEEEEEc--CCHHHHHHHHHHcCCceEEEEccCCCHHHHHH
Confidence 67999999999999999988875 56777653 4555555655555443322 234333344443
No 77
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.66 Score=41.37 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=33.6
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
..+|++.|.|+||.||....+-+.+. .++|+.+. +|-+.+.+..+
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~ 48 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKA--GWDLALVA--RSQDALEALAA 48 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 35689999999999999999998875 56777764 55555544433
No 78
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.56 Score=42.95 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=31.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~ 119 (353)
||++.|.|+||.||....+.+.+. .++|++++ +|-+.+.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~--G~~V~~~~--r~~~~~~~ 40 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAA--GYEVWATA--RKAEDVEA 40 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHH
Confidence 578999999999999999998865 68888764 44454443
No 79
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.61 Score=42.62 Aligned_cols=80 Identities=15% Similarity=0.063 Sum_probs=51.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC-CCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-PQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk-Pk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
.|++.|.|+||.||......+.+. .++|+.+ .+|.+.+.+..++.. ..+ ...|-...+.+.+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~--------- 70 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAAL--GARVAIG--DLDEALAKETAAELGLVVG-GPLDVTDPASFAAFLD--------- 70 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--ECCHHHHHHHHHHhccceE-EEccCCCHHHHHHHHH---------
Confidence 367999999999999999988875 5676654 367888877666654 333 2334444444444331
Q ss_pred ecHHHHHHHhcCCCCcEEEEe
Q 018592 155 AGEQGVIEAARHPDAVTVVTG 175 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~A 175 (353)
.+.+. ..++|++|+.
T Consensus 71 ----~~~~~--~~~id~li~~ 85 (273)
T PRK07825 71 ----AVEAD--LGPIDVLVNN 85 (273)
T ss_pred ----HHHHH--cCCCCEEEEC
Confidence 12221 2468888886
No 80
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=94.22 E-value=0.12 Score=48.72 Aligned_cols=51 Identities=27% Similarity=0.444 Sum_probs=38.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec--------CCHHHHHHHHHhhCCCEEE
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--------SNITLLADQVKRFKPQVVA 130 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag--------sNv~lL~~Q~~eFkPk~V~ 130 (353)
+||.|.|+||+||+...+-+.+.. +|+++.-. .+.+.+.+..++.+|+.|+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 369999999999999998776543 47776532 2445677777777899877
No 81
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.19 E-value=0.12 Score=43.78 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=32.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsN 113 (353)
.||+|.|+||=.|+...+.+.++|+ |++++....++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-FELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-EEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-cEEEEEEecCC
Confidence 3799999999999999999999765 99999988877
No 82
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.17 E-value=0.12 Score=50.33 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=39.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk 125 (353)
+||+|+|+||.+|..+...+...+-.++|+.+.-..+.++|..+..++.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~ 49 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY 49 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh
Confidence 4799999999999999999998877778998877666677766665543
No 83
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.14 E-value=0.057 Score=53.22 Aligned_cols=32 Identities=34% Similarity=0.623 Sum_probs=29.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaL 108 (353)
+.||+|+|+||.+|...++.+.+||+ ++|+++
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~-~el~~~ 34 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW-FEVTAL 34 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC-ceEEEE
Confidence 46899999999999999999999986 799998
No 84
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.14 E-value=0.076 Score=52.85 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=33.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeecCCH
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNI 114 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~--~pd~F~VvaLaagsNv 114 (353)
.+.||+|+|+||.+|...++++.+ ||. ++++.|+..++.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~-~~l~~las~rsa 46 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPY-SSLKMLASARSA 46 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCc-ceEEEEEccCCC
Confidence 346899999999999999999998 775 899999877664
No 85
>PRK08226 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.52 Score=42.61 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=40.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEE-EEeCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV-AVRNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V-~i~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||....+-+.+. .++|+.++-+.+.+.+.+...+...+.. ...|-...++++..
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 72 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARH--GANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAA 72 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHH
Confidence 378999999999999999998876 5777766533332233333333333332 23454444455443
No 86
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.13 E-value=0.33 Score=43.18 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=33.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
+++.|+|+||.||..+...+.++ ..+|+.+ ++|.+++.+.+.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~--~R~~~~~~~l~~~l 72 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLV--GRDLERAQKAADSL 72 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEE--cCCHHHHHHHHHHH
Confidence 67999999999999998888875 3566654 46778777666554
No 87
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.13 E-value=0.56 Score=42.72 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=45.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-eCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i-~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||..+..-+.+. .++|+.+ .+++.+.+.++.++...+...+ .|-...+.+++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~--G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKA--GADIVGV-GVAEAPETQAQVEALGRKFHFITADLIQQKDIDSI 73 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEe-cCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHH
Confidence 378999999999999999988875 6788765 4555666777777666554433 354444445443
No 88
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=94.10 E-value=0.51 Score=42.57 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=34.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~ 128 (353)
.|++.|.|+||.||..+.+-+.+. .++|+.+.-....+.+.++......+.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~ 58 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAE--GARVVLVDRSELVHEVAAELRAAGGEA 58 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCchHHHHHHHHHHhcCCeE
Confidence 368999999999999999988875 577876543222334444444444443
No 89
>PRK12743 oxidoreductase; Provisional
Probab=94.09 E-value=0.47 Score=42.99 Aligned_cols=64 Identities=19% Similarity=0.102 Sum_probs=41.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHH---HHHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT---LLADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~---lL~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
+|++.|.|+||.||..+...+.+. .++|+.+. .++.+ .+.++++++..+...+ .|-...+.++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~--G~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQ--GFDIGITW-HSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQ 69 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe-CCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 468999999999999999999886 67886654 33444 4455555555444433 34444444443
No 90
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.09 E-value=0.18 Score=53.91 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=49.8
Q ss_pred CCCeeEEEEecCChHhHHHHHHHH-hCCCceEEEEEeecCCHHHHHHHHHhhC--CCE-EEEeCccchHHHHHHhhcCCC
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVA-EHEDKFRVVALAAGSNITLLADQVKRFK--PQV-VAVRNESLLDEIKEALANVEE 149 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~-~~pd~F~VvaLaagsNv~lL~~Q~~eFk--Pk~-V~i~de~~~~~l~~~l~~~~~ 149 (353)
=.-|+|.|-|+|||||.....-+. .+|.+..+..-.=. |...+....++.. .+. ..+.|-..++.+...+.+ +
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~-~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~--~ 324 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEY-KLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEG--H 324 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchH-HHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhc--C
Confidence 345899999999999999876555 45666555442211 2333333333321 233 335666667777776653 3
Q ss_pred CcEEEecHHHHHH
Q 018592 150 KPEILAGEQGVIE 162 (353)
Q Consensus 150 ~~~v~~G~~gl~~ 162 (353)
++++.+-..++..
T Consensus 325 kvd~VfHAAA~KH 337 (588)
T COG1086 325 KVDIVFHAAALKH 337 (588)
T ss_pred CCceEEEhhhhcc
Confidence 4556666555443
No 91
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.06 E-value=0.36 Score=46.23 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 73 WDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 73 ~~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
|.+ |+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 2 ~~~-k~ilItGatG~IG~~l~~~L~~~--G~~V~~~~r 36 (349)
T TIGR02622 2 WQG-KKVLVTGHTGFKGSWLSLWLLEL--GAEVYGYSL 36 (349)
T ss_pred cCC-CEEEEECCCChhHHHHHHHHHHC--CCEEEEEeC
Confidence 444 67999999999999999999875 578998863
No 92
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.06 E-value=0.69 Score=41.18 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=40.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh--CCCEE-EEeCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQVV-AVRNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF--kPk~V-~i~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||.+..+-+.+. .++|+.+. +|.+.+.+...+. +.+.. ...|-...+.+++.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE--GARVVVAD--RDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEAL 71 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCeEEEec--CCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 468999999999999999988875 57777664 4555555444443 22222 22344444455543
No 93
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.05 E-value=0.62 Score=42.60 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=44.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE-EeCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~-i~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||..+.+-+.+. .++|+.+ .+|.+.+.+..+++..+..+ ..|-...+.+++.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA--GARVAIV--DIDADNGAAVAASLGERARFIATDITDDAAIERA 70 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHH
Confidence 368999999999999999998875 5777665 35667677777766544333 2354444455443
No 94
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.71 Score=41.03 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=36.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCE
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~ 128 (353)
|++.|.|+||.||....+-+.+. .++|+.+ .+|.+.+.+..+++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~--g~~v~~~--~r~~~~~~~~~~~~~~~~ 54 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAE--GARVAIT--GRDPASLEAARAELGESA 54 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEe--cCCHHHHHHHHHHhCCce
Confidence 68999999999999999998876 4677665 456677777666665443
No 95
>PRK06182 short chain dehydrogenase; Validated
Probab=94.01 E-value=0.66 Score=42.49 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=50.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.|++.|.|+||.||....+.+.+. .++|++++ +|.+.+.+... .+..++ ..|-...+.+.+.+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~--G~~V~~~~--r~~~~l~~~~~-~~~~~~-~~Dv~~~~~~~~~~~---------- 66 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ--GYTVYGAA--RRVDKMEDLAS-LGVHPL-SLDVTDEASIKAAVD---------- 66 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHh-CCCeEE-EeeCCCHHHHHHHHH----------
Confidence 478999999999999999988764 67888764 56676655432 233332 234444444443321
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCcc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCA 180 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~a 180 (353)
.+.+ ....+|+||+. +|..
T Consensus 67 ---~~~~--~~~~id~li~~-ag~~ 85 (273)
T PRK06182 67 ---TIIA--EEGRIDVLVNN-AGYG 85 (273)
T ss_pred ---HHHH--hcCCCCEEEEC-CCcC
Confidence 1111 23468899887 3543
No 96
>PRK08628 short chain dehydrogenase; Provisional
Probab=94.01 E-value=0.57 Score=42.18 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=40.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
|++.|.|+||.||......+.+. .++|+.++-...-..+.+++++..++...+ .|-...+.++.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEE--GAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRD 72 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHc--CCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 68999999999999999998876 456666543322224445555555554333 34444444444
No 97
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.01 E-value=0.62 Score=41.33 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=34.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|++.|.|+||.||....+.+.+. .++|+.+ .++-+.+.+...++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~ 51 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA--GATVAFN--DGLAAEARELAAAL 51 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHH
Confidence 378999999999999999998875 5678776 35666655554443
No 98
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.58 Score=41.74 Aligned_cols=64 Identities=23% Similarity=0.194 Sum_probs=39.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEEE-EeCccchHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags-Nv~lL~~Q~~eFkPk~V~-i~de~~~~~l~~ 142 (353)
|++.|.|+||.||..+..-+.+. .++|+.+.-.. +.+.+.+.+++..++... ..|-...+.++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~--g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE--GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKA 72 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 67999999999999999998875 57888764321 222333334333334332 344444444444
No 99
>PRK08278 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.69 Score=42.78 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=40.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC---------HHHHHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN---------ITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsN---------v~lL~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
|++.|.|+||.||.+..+-+.++ .++|+.+. +++ .+.+.+++++...+...+ .|-...+.++.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 79 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARD--GANIVIAA-KTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAA 79 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEe-cccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHH
Confidence 68999999999999999998876 46777764 322 233445555544444433 44444444444
No 100
>PRK12827 short chain dehydrogenase; Provisional
Probab=93.91 E-value=0.61 Score=41.20 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=40.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe--ecCCHHHHHHHHHhh---CCCEEE-EeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA--AGSNITLLADQVKRF---KPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa--agsNv~lL~~Q~~eF---kPk~V~-i~de~~~~~l~~ 142 (353)
.|++.|.|+||.||.....-+.++ .++|+.+. ..++.+.+.+...++ ..+... ..|-...+.++.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 76 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAAD--GADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRA 76 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 367999999999999999888876 56777764 234555555444444 334322 234444444443
No 101
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.77 Score=41.99 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=39.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE-EeCccchHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~-i~de~~~~~l~~ 142 (353)
|++.|.|+||.||.....-+.+. .++|+++. +|.+.+.+...++..+... -.|-...+.+++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 65 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLAR--GDRVAATV--RRPDALDDLKARYGDRLWVLQLDVTDSAAVRA 65 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHhccCceEEEEccCCCHHHHHH
Confidence 67999999999999999888765 46676654 4556665554444433322 234333444444
No 102
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=93.89 E-value=0.051 Score=47.64 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=31.8
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~ 118 (353)
|.|+|+||+||....+-+.+. .++|++++.+++-+.+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~--g~~v~~~~~~~~~~~~~ 38 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKK--GHEVIVLSRSSNSESFE 38 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TTEEEEEESCSTGGHHH
T ss_pred EEEEccCCHHHHHHHHHHHHc--CCccccccccccccccc
Confidence 789999999999999999876 56788998888766543
No 103
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=93.88 E-value=0.68 Score=40.98 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=49.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh---hCCCEE-EEeCccchHHHHHHhhcCCCCc
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR---FKPQVV-AVRNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e---FkPk~V-~i~de~~~~~l~~~l~~~~~~~ 151 (353)
||.+.|.|+||.||.+..+.+.+. .++|+.+. .+|.+.+.+...+ ...+.. .-.|-...+.+++.+.
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~--g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~------ 71 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQE--GYTVAVNY-QQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFT------ 71 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe-CCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHH------
Confidence 478999999999999999998865 57776543 4455555444433 333322 2234444444444332
Q ss_pred EEEecHHHHHHHhcCCCCcEEEEec
Q 018592 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~~~D~Vv~AI 176 (353)
.+.+ ....+|.|++..
T Consensus 72 -------~~~~--~~~~id~vi~~a 87 (247)
T PRK09730 72 -------AIDQ--HDEPLAALVNNA 87 (247)
T ss_pred -------HHHH--hCCCCCEEEECC
Confidence 1111 234688898884
No 104
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=93.88 E-value=0.13 Score=50.44 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=43.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC----CHHHHHHHHHhhCCCEEEE
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS----NITLLADQVKRFKPQVVAV 131 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags----Nv~lL~~Q~~eFkPk~V~i 131 (353)
+|.|+|+||-.|+...+.+. .+|+|++++-.. |.+.+.+.+++.+|+.|+=
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~---~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn 56 (281)
T COG1091 2 KILITGANGQLGTELRRALP---GEFEVIATDRAELDITDPDAVLEVIRETRPDVVIN 56 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC---CCceEEeccCccccccChHHHHHHHHhhCCCEEEE
Confidence 39999999999998887766 579999998665 6688999999999999873
No 105
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.86 E-value=0.79 Score=40.17 Aligned_cols=83 Identities=17% Similarity=0.088 Sum_probs=49.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh---hCCCEEEE-eCccchHHHHHHhhcCCCCc
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR---FKPQVVAV-RNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e---FkPk~V~i-~de~~~~~l~~~l~~~~~~~ 151 (353)
.|+|.|.|+||.||....+.+.+. .++|+.++ +|-+.+.+...+ ...+...+ .|-...+.+...+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 74 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAAD--GAKVVIYD--SNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIE------ 74 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH------
Confidence 368999999999999999998876 56665554 444444444433 33444333 34443444444332
Q ss_pred EEEecHHHHHHHhcCCCCcEEEEecc
Q 018592 152 EILAGEQGVIEAARHPDAVTVVTGIV 177 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~~~D~Vv~AIv 177 (353)
++.+. ...+|.|+....
T Consensus 75 -------~~~~~--~~~id~vi~~ag 91 (246)
T PRK05653 75 -------AAVEA--FGALDILVNNAG 91 (246)
T ss_pred -------HHHHH--hCCCCEEEECCC
Confidence 22221 245888888753
No 106
>PRK08263 short chain dehydrogenase; Provisional
Probab=93.85 E-value=0.88 Score=41.82 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=35.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ 127 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk 127 (353)
.|+|.|.|+||.||.++.+-+.+. .++|+.+. +|-+.+.+...++..+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~--g~~V~~~~--r~~~~~~~~~~~~~~~ 50 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALER--GDRVVATA--RDTATLADLAEKYGDR 50 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHhccCC
Confidence 368999999999999999988765 57777654 5666676666655433
No 107
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.76 E-value=0.34 Score=45.96 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=26.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
+|.|+|+||+||+..++-+.+. .++|++++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~ 31 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE--GYQVRCLV 31 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCeEEEEE
Confidence 6999999999999999888865 58999987
No 108
>PRK08643 acetoin reductase; Validated
Probab=93.75 E-value=0.71 Score=41.55 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=31.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
|.+.|.|+||.||.++...+.+. .++|+.+. ++-+.+.+...+
T Consensus 3 k~~lItGas~giG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~~ 45 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVED--GFKVAIVD--YNEETAQAAADK 45 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 67999999999999999999876 57887764 344444444333
No 109
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.75 E-value=0.094 Score=51.47 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=31.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeecCC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSN 113 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~--~pd~F~VvaLaagsN 113 (353)
++||+|+||||.+|...++.+.+ ||. |++++++..++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~-~~l~~l~s~~~ 39 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPV-DKLRLLASARS 39 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCc-ceEEEEEcccc
Confidence 35899999999999999999998 665 89999976654
No 110
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.71 E-value=0.72 Score=41.95 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=33.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|++.|.|+||.||.+..+-+.+. .++|+.+ .+|-+.+.+....+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~l~~~~ 49 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAE--GARVAVL--DKSAAGLQELEAAH 49 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHhhc
Confidence 478999999999999999988876 6778765 35556655544433
No 111
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.69 E-value=0.89 Score=41.94 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=42.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
+|++.|.|+||.||..+..-+.+. .++|+++. +|-+.+.+.......+...+ .|-...+.+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~--G~~V~~~~--r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~ 67 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA--GHRVVGTV--RSEAARADFEALHPDRALARLLDVTDFDAIDA 67 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC--cCEEEEEe--CCHHHHHHHHhhcCCCeeEEEccCCCHHHHHH
Confidence 478999999999999999988775 57787764 56677766655554444332 24333444443
No 112
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.64 E-value=0.91 Score=40.43 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=42.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-eCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i-~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||..+.+-+.+. .++|+.+. .++.+.+.+...++..+..++ .|-...+.+++.
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~--G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 70 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFARE--GARVVVNY-HQSEDAAEALADELGDRAIALQADVTDREQVQAM 70 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC--CCeEEEEc-CCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHH
Confidence 368999999999999999988765 57787544 444566666566665554333 344444444443
No 113
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.64 E-value=0.9 Score=41.02 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=42.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
|++.|.|+||.||......+.++ .++|+.+ .+|.+.+.+...+...+...+ .|-...+.+++
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~--G~~v~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAE--GARVVIA--DIKPARARLAALEIGPAAIAVSLDVTRQDSIDR 69 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc--CCEEEEE--cCCHHHHHHHHHHhCCceEEEEccCCCHHHHHH
Confidence 67999999999999999999876 5777765 356777776666655443332 23333334443
No 114
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.64 E-value=0.66 Score=42.35 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=39.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHH---HHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~l---L~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
.|++.|.|+||.||.++.+-+.+. .++|+.+. ++-+. +.++.+....+..++ .|-...+.+..
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~--G~~Vi~~~--r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 76 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEA--GADVLIAA--RTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAG 76 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 468999999999999999998875 57887764 33444 444444333333222 34444444443
No 115
>PRK06194 hypothetical protein; Provisional
Probab=93.61 E-value=0.88 Score=41.76 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=40.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh---CCCEEEE-eCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF---kPk~V~i-~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||....+-+.+. .++|+.+. ++.+.+.+...+. ..+..++ .|-...+.+.+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL--GMKLVLAD--VQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEe--CChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 478999999999999999988876 56776553 4555555554443 3444333 344444445443
No 116
>PRK09135 pteridine reductase; Provisional
Probab=93.57 E-value=0.79 Score=40.48 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=31.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q 120 (353)
+++.|.|+||.||.+..+-+.+. .++|+++. +++.+.+.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~--g~~v~~~~-r~~~~~~~~~ 47 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAA--GYRVAIHY-HRSAAEADAL 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHH
Confidence 67999999999999999998876 68888775 4443444333
No 117
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=93.56 E-value=0.55 Score=46.87 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=83.8
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCc
Q 018592 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 72 ~~~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~ 151 (353)
.+...++|.|+|++|.+|+.++++.+... |..+.-++..+-..| ++++..+.++=.++..+ .+..
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l---~k~lGAd~vvdy~~~~~---~e~~------- 218 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLEL---VKKLGADEVVDYKDENV---VELI------- 218 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHH---HHHcCCcEeecCCCHHH---HHHH-------
Confidence 56667899999999999999999999874 566666666555444 67777777764433211 1111
Q ss_pred EEEecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEeecCCchhHH
Q 018592 152 EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAI 231 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAI 231 (353)
.... ...+|+|++.+.|. -+......+..+.+.+ -+...|......-.. | .
T Consensus 219 ---------kk~~-~~~~DvVlD~vg~~-~~~~~~~~l~~~g~~~-----~i~~~~~~~~~~~~~--------~-----~ 269 (347)
T KOG1198|consen 219 ---------KKYT-GKGVDVVLDCVGGS-TLTKSLSCLLKGGGGA-----YIGLVGDELANYKLD--------D-----L 269 (347)
T ss_pred ---------Hhhc-CCCccEEEECCCCC-ccccchhhhccCCceE-----EEEeccccccccccc--------c-----c
Confidence 1112 34699999998886 5555555555554433 334444443221110 1 1
Q ss_pred HHhhcCCCCCCcceEEEEecCCcCCCCC
Q 018592 232 FQCIQGLPEGALRRIILTASGGAFRDWP 259 (353)
Q Consensus 232 fQ~L~g~~~~~v~kIiLTASGGPFr~~~ 259 (353)
|| . ...++...++..|.+|+...
T Consensus 270 ~~----~-~~~~~~~~~~~~~~~~~~~~ 292 (347)
T KOG1198|consen 270 WQ----S-ANGIKLYSLGLKGVNYRWLY 292 (347)
T ss_pred hh----h-hhhhhheeeeeeccceeeee
Confidence 22 1 23456677777777776544
No 118
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.54 E-value=1.2 Score=39.80 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=32.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
.|+|.|.|+||.||..+.+-+.+. .++|+++. +|-+.+.+...
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~--G~~Vi~~~--r~~~~~~~~~~ 51 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQA--GAKVVLAS--RRVERLKELRA 51 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 478999999999999999999875 57777664 34555444333
No 119
>PRK06181 short chain dehydrogenase; Provisional
Probab=93.54 E-value=0.82 Score=41.31 Aligned_cols=41 Identities=27% Similarity=0.241 Sum_probs=30.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~ 121 (353)
+++.|.|+||.||.....-+.+. .++|+++. +|.+.+.+..
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~--g~~Vi~~~--r~~~~~~~~~ 42 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA--GAQLVLAA--RNETRLASLA 42 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHH
Confidence 57999999999999999888765 46888775 4444444333
No 120
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.7 Score=41.47 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=32.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
|++.|.|+||.||.....-+.+. .++|+.+. +|.+.+.++.++
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~--G~~Vi~~~--r~~~~~~~~~~~ 51 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQ--GAHVIVSS--RKLDGCQAVADA 51 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 68999999999999999998876 56888775 455554444443
No 121
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.51 E-value=0.9 Score=41.26 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=41.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE-EeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~-i~de~~~~~l~~ 142 (353)
.|++.|.|+||.||..+..-+.+. .++|+.+ .+|-+.+.+...+...+... ..|-...+.++.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAE--GARVAVL--ERSAEKLASLRQRFGDHVLVVEGDVTSYADNQR 69 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCcceEEEccCCCHHHHHH
Confidence 468999999999999999998876 5677665 35666666666555433322 234343444443
No 122
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.51 E-value=1 Score=39.73 Aligned_cols=63 Identities=22% Similarity=0.249 Sum_probs=40.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE-EeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~-i~de~~~~~l~~ 142 (353)
.|++.|.|+||.||.+..+-+.++ .+.|+. . .++.+.+.++..+...+... ..|-...+.+++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~--g~~v~~-~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQ--GAIVGL-H-GTRVEKLEALAAELGERVKIFPANLSDRDEVKA 69 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEE-E-cCCHHHHHHHHHHhCCceEEEEccCCCHHHHHH
Confidence 468999999999999999888765 355544 3 35677777766655433322 234344444444
No 123
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.50 E-value=1.4 Score=41.71 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=33.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
|++.|.|+||-||....+.+.++ .++|+.++ +|.+.+.+...+.
T Consensus 41 k~vlItGasggIG~~la~~La~~--G~~Vi~~~--R~~~~l~~~~~~l 84 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR--GATVVAVA--RREDLLDAVADRI 84 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHH
Confidence 68999999999999999999876 57777653 4566665554443
No 124
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=93.47 E-value=0.74 Score=45.82 Aligned_cols=110 Identities=21% Similarity=0.200 Sum_probs=67.3
Q ss_pred eEEEEecCChHhHHHHHHHHhCC--CceEEEEEeecCCHHHHHHHHH------hhCCCEEEEeCccchHHHHHHhhcCCC
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHE--DKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEE 149 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~p--d~F~VvaLaagsNv~lL~~Q~~------eFkPk~V~i~de~~~~~l~~~l~~~~~ 149 (353)
||+|.|. |=||+..++++.+.+ ++|+|+++.--...+-++-..+ +|+. -|...+.. +.-.+.
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~-~v~~~~~~--------l~v~g~ 70 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPG-EVKVDGDC--------LHVNGD 70 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCC-cEEEeCCE--------EEECCe
Confidence 5999999 999999999988764 5799999976555555544332 2211 11111111 000112
Q ss_pred CcEEEecHHHHHHHh-cCCCCcEEEEeccCccCcHHHHHHHHcC-CcEeee
Q 018592 150 KPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 198 (353)
Q Consensus 150 ~~~v~~G~~gl~~~a-~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g-K~IaLA 198 (353)
.++++.- ....++- ...++|+|+.+...+.-.+-...++++| |.|-+.
T Consensus 71 ~i~v~~~-~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~S 120 (325)
T TIGR01532 71 CIRVLHS-PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFS 120 (325)
T ss_pred EEEEEEc-CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEec
Confidence 2333322 2233322 2247999999988888888888999999 544443
No 125
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.46 E-value=0.48 Score=43.27 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=31.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~ 118 (353)
+|+|.|+|+||.||...+.-+.+. .++|++++ +|.+.+.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~--R~~~~~~ 55 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGV--RDVDKAK 55 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEe--cCHHHHH
Confidence 578999999999999999888775 58888875 4545443
No 126
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.45 E-value=0.11 Score=50.05 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=30.6
Q ss_pred CCCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 71 ~~~~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
|-.-.+|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~--g~~V~~~d~ 47 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFL--NQTVIGLDN 47 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeC
Confidence 33334467999999999999999999876 578999863
No 127
>PRK08589 short chain dehydrogenase; Validated
Probab=93.44 E-value=0.8 Score=42.24 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=31.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
.|++.|.|+||.||..+..-+.+. .++|+.+. +| +.+.+.+.+
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~--G~~vi~~~--r~-~~~~~~~~~ 48 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQE--GAYVLAVD--IA-EAVSETVDK 48 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--Cc-HHHHHHHHH
Confidence 468999999999999999988876 57787764 34 444444433
No 128
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.39 E-value=0.13 Score=51.24 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=31.2
Q ss_pred CeeEEEEecCChHhHHHHHHHH--hCCCceEEEEEeecCC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVA--EHEDKFRVVALAAGSN 113 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~--~~pd~F~VvaLaagsN 113 (353)
|.+|+|+||||.+|...++++. .||. ++++.++..+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~-~~l~~v~s~~~ 42 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPV-GTLHLLASSES 42 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCc-eEEEEEECccc
Confidence 4689999999999999999999 6775 88888876543
No 129
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=93.38 E-value=0.95 Score=41.06 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=41.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-eCccchHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i-~de~~~~~l~~~ 143 (353)
|.+.|.|+||.||..+.+-+.+. .++|+++. .+.-+.+.+++++...+...+ .|-...++++..
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~--G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 75 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEA--GCDIVGIN-IVEPTETIEQVTALGRRFLSLTADLRKIDGIPAL 75 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEec-CcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 68999999999999999988875 67888764 333355555665544444333 344444444443
No 130
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.37 E-value=0.93 Score=40.09 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=32.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
.|+|.|.|+||.||.....-+.++ .++|++++ +|.+.+.+...+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 49 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD--GAEVIVVD--ICGDDAAATAEL 49 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 468999999999999998887765 57887764 454544444443
No 131
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=93.36 E-value=0.35 Score=51.01 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=30.3
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
.+|+|.|.|+||+||+..++-+.+....++|+++.-
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 357899999999999999998887644689998864
No 132
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.32 E-value=0.82 Score=40.96 Aligned_cols=43 Identities=21% Similarity=0.118 Sum_probs=31.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
.|++.|.|+||.||.++..-+.+. .++|+.+. +|-+.+.+...
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~ 47 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARA--GADVVLAA--RTAERLDEVAA 47 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHH
Confidence 478999999999999999988875 56777654 34444444333
No 133
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=93.32 E-value=0.95 Score=40.08 Aligned_cols=107 Identities=26% Similarity=0.344 Sum_probs=64.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH------hhCCCEEEEeCccchHHHHHHhhcCCCCc
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~------eFkPk~V~i~de~~~~~l~~~l~~~~~~~ 151 (353)
||+|.|. |-||+..++.+.+.| +++++++..-.+.+-++-+.+ .|++. +...+.. +.-.+..+
T Consensus 2 kv~I~G~-GriGr~v~~~~~~~~-~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~-v~~~~~~--------l~i~g~~i 70 (149)
T smart00846 2 KVGINGF-GRIGRLVLRALLERP-DIEVVAINDLTDPETLAHLLKYDSVHGRFPGE-VEVDEDG--------LIVNGKKI 70 (149)
T ss_pred EEEEECc-CHHHHHHHHHHHhCC-CCEEEEeecCCCHHHHHHHhcccCCCCCCCCc-EEEeCCE--------EEECCEEE
Confidence 6999998 999999999998765 599999876567777777665 22222 2221111 11012223
Q ss_pred EEEecHHHHHHHh-cCCCCcEEEEeccCccCcHHHH-HHHHcC-CcEee
Q 018592 152 EILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTV-AAIEAG-KDIAL 197 (353)
Q Consensus 152 ~v~~G~~gl~~~a-~~~~~D~Vv~AIvG~aGL~pT~-~Ai~~g-K~IaL 197 (353)
+++. +....++- ...++|+||.+ +|..+-+... .-+++| |+|.+
T Consensus 71 ~~~~-~~~p~~~~w~~~gvDiVie~-tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 71 KVLA-ERDPANLPWKELGVDIVVEC-TGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred EEEe-cCChHHCcccccCCeEEEec-cccccchHHHHHHHHcCCCEEEe
Confidence 3332 22222221 23478999999 8887766654 456666 55543
No 134
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.26 E-value=0.88 Score=40.14 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=39.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh---hCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR---FKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e---FkPk~V~i-~de~~~~~l~~ 142 (353)
+|+|.|.|+||.||.....-..+. .++|+.+. .++-+.+.+...+ ...+...+ .|-...+.++.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~--g~~v~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE--GAKVVIAY-DINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVEN 72 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 468999999999999999888765 57887662 3344444444433 23333222 34444444444
No 135
>PLN00016 RNA-binding protein; Provisional
Probab=93.22 E-value=0.53 Score=45.96 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCeeEEEE----ecCChHhHHHHHHHHhCCCceEEEEEeecC
Q 018592 75 GPKPISVL----GSTGSIGTQTLDIVAEHEDKFRVVALAAGS 112 (353)
Q Consensus 75 ~~k~I~IL----GSTGSIGtqTLdVI~~~pd~F~VvaLaags 112 (353)
.+++|.|+ |+||.||.....-+.+. .++|.+++-+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~--G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKA--GHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHC--CCEEEEEecCC
Confidence 34789999 99999999999988765 58999988543
No 136
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.21 E-value=0.95 Score=40.67 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=39.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHH---HHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~l---L~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
.|++.|.|+||.||..+..-+.+. .++|+.+. +|-+. +.++.+++..+...+ .|-...+.+.+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 73 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFARE--GAKVVVAD--RDAAGGEETVALIREAGGEALFVACDVTRDAEVKA 73 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 478999999999999999988875 46777653 34333 444455554443332 34433444443
No 137
>PRK09134 short chain dehydrogenase; Provisional
Probab=93.19 E-value=0.8 Score=41.48 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=40.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHH---HHHHHHhhCCCEEE-EeCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVA-VRNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~l---L~~Q~~eFkPk~V~-i~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||..+.+.+.+. .++|+.+. .++-+. +.+++++-.++... ..|-...+.+.+.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~--g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 77 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAH--GFDVAVHY-NRSRDEAEALAAEIRALGRRAVALQADLADEAEVRAL 77 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEe-CCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 368999999999999999998875 46777654 334443 33444333333322 2354445555543
No 138
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=93.18 E-value=0.26 Score=51.98 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=40.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEE-EEEeecCCHHHHHHHHHhhCCCEEE
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRV-VALAAGSNITLLADQVKRFKPQVVA 130 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~V-vaLaagsNv~lL~~Q~~eFkPk~V~ 130 (353)
+||.|.|+||+||+...+.+.+. .++| ++..--++.+.+.+.+.+++|++|+
T Consensus 381 mkiLVtGa~G~iG~~l~~~L~~~--g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vi 433 (668)
T PLN02260 381 LKFLIYGRTGWIGGLLGKLCEKQ--GIAYEYGKGRLEDRSSLLADIRNVKPTHVF 433 (668)
T ss_pred ceEEEECCCchHHHHHHHHHHhC--CCeEEeeccccccHHHHHHHHHhhCCCEEE
Confidence 57999999999999999988765 4666 3332235777788888889999987
No 139
>PRK12742 oxidoreductase; Provisional
Probab=93.18 E-value=0.56 Score=41.49 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=36.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~ 128 (353)
.|++.|.|+||.||..+...+.+. .++|+.+ ..++.+.+.+...+++.+.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~--G~~v~~~-~~~~~~~~~~l~~~~~~~~ 55 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTD--GANVRFT-YAGSKDAAERLAQETGATA 55 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEe-cCCCHHHHHHHHHHhCCeE
Confidence 368999999999999999988875 5677654 4456666666666665543
No 140
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=93.14 E-value=0.86 Score=40.54 Aligned_cols=63 Identities=22% Similarity=0.130 Sum_probs=39.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH---hhCCCEEE-EeCccchHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKPQVVA-VRNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~---eFkPk~V~-i~de~~~~~l~~~ 143 (353)
|++.|.|+||+||....+-+.+. .++|++++ +|.+.+.+... ....+... ..|-...+.++..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 68 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAA--GANVVVND--LGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADM 68 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHH
Confidence 67999999999999999998875 56787764 34444443333 33333332 2354444445443
No 141
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=93.12 E-value=0.31 Score=46.44 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=27.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
|+|.|.|+||+||....+-+.+. .++|+++.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~ 31 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK--GYEVHGLI 31 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC--CCEEEEEe
Confidence 58999999999999999988775 57888875
No 142
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=93.10 E-value=1.3 Score=41.97 Aligned_cols=46 Identities=11% Similarity=0.282 Sum_probs=34.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
..|++.|.|+||.||..+...+.+. .++|+.+. +|.+.+.+...+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~--G~~V~~~~--r~~~~~~~~~~~l 50 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKR--GWHVIMAC--RNLKKAEAAAQEL 50 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHh
Confidence 3578999999999999999988876 47776653 5666666555554
No 143
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.08 E-value=0.54 Score=48.83 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=40.5
Q ss_pred cccCCCCCCeeEEEEecCChHhHHHHHHHHhC-------CCceEEEEEeecCCHHHHHHHHHhhC
Q 018592 68 TFRKTWDGPKPISVLGSTGSIGTQTLDIVAEH-------EDKFRVVALAAGSNITLLADQVKRFK 125 (353)
Q Consensus 68 ~~~~~~~~~k~I~ILGSTGSIGtqTLdVI~~~-------pd~F~VvaLaagsNv~lL~~Q~~eFk 125 (353)
...++|..|-||+|.|++|.||.+++-.+... +---+++-+ ..|-+++.-++.++.
T Consensus 92 ~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvli--D~~~~~a~G~amDL~ 154 (444)
T PLN00112 92 EETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGS--ERSKQALEGVAMELE 154 (444)
T ss_pred hhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEE--cCCcchhHHHHHHHH
Confidence 34589999999999999999999999877654 222245533 457777777766553
No 144
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=93.07 E-value=1.1 Score=39.92 Aligned_cols=65 Identities=22% Similarity=0.162 Sum_probs=40.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH---HhhCCCEEEE-eCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVAV-RNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~---~eFkPk~V~i-~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||....+-+.++ .++|+.+ ..++-+.+.+.. ++..++...+ .|-...+.+.+.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~--g~~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 74 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQE--GAKVVIN-YNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRL 74 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--CCEEEEE-cCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 478999999999999999988876 5677654 344444444443 3333344333 344444444443
No 145
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.06 E-value=0.73 Score=40.84 Aligned_cols=62 Identities=23% Similarity=0.156 Sum_probs=42.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~ 142 (353)
.|++.|.|+||.||..+...+.+. .++|+.++ +|.+.+.+..++++... ...|-...+.+++
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~--g~~V~~~~--r~~~~~~~~~~~~~~~~-~~~D~~~~~~v~~ 70 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQR--GARVVAAA--RNAAALDRLAGETGCEP-LRLDVGDDAAIRA 70 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHhCCeE-EEecCCCHHHHHH
Confidence 368999999999999999999876 56777654 56677766666665443 3344444444443
No 146
>PRK12744 short chain dehydrogenase; Provisional
Probab=93.05 E-value=1.3 Score=40.13 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=39.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec--CCHH---HHHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--SNIT---LLADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag--sNv~---lL~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
|++.|.|+||.||..+.+.+.+. .++|+.+... ++.+ .+.++.+.+.++...+ .|-...+.+++
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~--G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 78 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQ--GAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEK 78 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHC--CCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHH
Confidence 68999999999999999999875 5677766543 2333 3334444444444332 34444444444
No 147
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.04 E-value=1 Score=40.70 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=33.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
|++.|.|+||.||..+..-+.+. .++|+.+ .+|.+.+.+...+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~l 53 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEA--GAQVAIA--ARHLDALEKLADEI 53 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEE--cCCHHHHHHHHHHH
Confidence 67999999999999999999876 5677664 35556555554443
No 148
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=93.02 E-value=0.93 Score=41.29 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=34.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|++.|.|+||.||..+..-+.+. .++|+. .+.+|.+.+.+.+++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~--G~~v~~-~~~~~~~~~~~~~~~~ 53 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQS--GVNIAF-TYNSNVEEANKIAEDL 53 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEE-EcCCCHHHHHHHHHHH
Confidence 478999999999999999988875 566654 4566777666555443
No 149
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.99 E-value=1.8 Score=39.34 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=30.3
Q ss_pred CeeEEEEecCCh-HhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 018592 76 PKPISVLGSTGS-IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (353)
Q Consensus 76 ~k~I~ILGSTGS-IGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~ 121 (353)
.|++.|.|+||| ||..+..-+.+. .++|+... +|.+.+.+..
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~--G~~V~~~~--~~~~~~~~~~ 59 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEE--GARVVISD--IHERRLGETA 59 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHH
Confidence 478999999996 999999998876 46666543 4555554443
No 150
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.97 E-value=0.99 Score=43.13 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=62.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
.++|.|.|+ |+||..++.+.+.. .. +|++... +-+++ +.++++..+.+.-.++... .+.
T Consensus 170 g~~VlV~G~-G~vG~~aiqlak~~--G~~~Vi~~~~--~~~~~-~~a~~lGa~~vi~~~~~~~---~~~----------- 229 (343)
T PRK09880 170 GKRVFVSGV-GPIGCLIVAAVKTL--GAAEIVCADV--SPRSL-SLAREMGADKLVNPQNDDL---DHY----------- 229 (343)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCcEEEEEeC--CHHHH-HHHHHcCCcEEecCCcccH---HHH-----------
Confidence 368999996 99999999999876 45 4665543 33443 5678888877654322211 111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeee
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLA 198 (353)
.+ ....+|+|+++..+-..+...+.+++.|-++.+.
T Consensus 230 ------~~--~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 230 ------KA--EKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ------hc--cCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 10 1124899999965556788888888888776554
No 151
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.96 E-value=0.74 Score=49.41 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=34.4
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
...|.|.|+|+||.||..+.+-+.+. .++|+++. +|.+.+.+...
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~--G~~Vval~--Rn~ekl~~l~~ 122 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKL--GFRVRAGV--RSAQRAESLVQ 122 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHH
Confidence 34578999999999999999888765 68888864 56666654443
No 152
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=92.92 E-value=0.14 Score=48.84 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
||+|.|+|+||+||.....-+.+.. .++|+++.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~-~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETT-DWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCC-CCeEEEEe
Confidence 4689999999999999999887643 48999986
No 153
>PRK06924 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.62 Score=41.70 Aligned_cols=64 Identities=9% Similarity=0.225 Sum_probs=40.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEE-EEeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV-AVRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V-~i~de~~~~~l~~ 142 (353)
||++.|.|+||.||.+..+-+.+. .++|+.++ ++..+.+.+...+...+.. ...|-...++++.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~--g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEK--GTHVISIS-RTENKELTKLAEQYNSNLTFHSLDLQDVHELET 65 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhc--CCEEEEEe-CCchHHHHHHHhccCCceEEEEecCCCHHHHHH
Confidence 578999999999999999988775 57887764 3333455554544444432 2334443444443
No 154
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=92.86 E-value=1.2 Score=40.10 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=39.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH---HHhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q---~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
.|++.|.|+||.||..+.+.+.++ .++|+.+. +|-+.+.+. +++...+...+ .|-...+.+..
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 77 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGA--GAHVLVNG--RNAATLEAAVAALRAAGGAAEALAFDIADEEAVAA 77 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCeEEEEe--CCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 568999999999999999988875 57777653 344444443 33444444333 34444444443
No 155
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.82 E-value=1 Score=41.73 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=60.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.+|.|.|++|.+|..++.+.+.. ..+|++.+. +-++ .+.++++..+.+.-.+.... .+
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~--s~~~-~~~l~~~Ga~~vi~~~~~~~---~~-------------- 202 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAG--SDDK-VAWLKELGFDAVFNYKTVSL---EE-------------- 202 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCCCEEEeCCCccH---HH--------------
Confidence 68999999999999999999986 567777653 2233 34556688777654332211 11
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.++.. ..+|+|++.+.| ..+...+.+++.+=++.
T Consensus 203 --~v~~~~~-~gvd~vld~~g~-~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 203 --ALKEAAP-DGIDCYFDNVGG-EFSSTVLSHMNDFGRVA 238 (329)
T ss_pred --HHHHHCC-CCcEEEEECCCH-HHHHHHHHhhccCCEEE
Confidence 1222222 358999998766 56666677776554443
No 156
>PRK07832 short chain dehydrogenase; Provisional
Probab=92.82 E-value=1.1 Score=41.06 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=32.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
|++.|.|+||.||......+.+. .++|+.+ ++|.+.+.+.+++.
T Consensus 1 k~vlItGas~giG~~la~~la~~--G~~vv~~--~r~~~~~~~~~~~~ 44 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQ--GAELFLT--DRDADGLAQTVADA 44 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHH
Confidence 47999999999999999998875 5777665 35666655544443
No 157
>PRK08017 oxidoreductase; Provisional
Probab=92.81 E-value=1.2 Score=39.91 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=39.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~ 142 (353)
|++.|.|+||.||.+..+.+.+. .++|+++ .+|.+.+.+ +++.+.+.+ ..|-...+.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~--g~~v~~~--~r~~~~~~~-~~~~~~~~~-~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR--GYRVLAA--CRKPDDVAR-MNSLGFTGI-LLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHhHH-HHhCCCeEE-EeecCCHHHHHH
Confidence 67999999999999999999875 4677665 356666543 333443333 234444444444
No 158
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.79 E-value=0.51 Score=42.35 Aligned_cols=64 Identities=19% Similarity=0.110 Sum_probs=44.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~ 147 (353)
++|.|+|+||.||+.+++-+.+. .++|++++ +|-+.+.... ..++. ...|-.....+...+.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~--~~~v~~~~--r~~~~~~~~~--~~v~~-~~~d~~~~~~l~~a~~G~ 64 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR--GHEVRAAV--RNPEAAAALA--GGVEV-VLGDLRDPKSLVAGAKGV 64 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC--CCEEEEEE--eCHHHHHhhc--CCcEE-EEeccCCHhHHHHHhccc
Confidence 36999999999999999999887 78888876 6666665555 33332 234444455566555543
No 159
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=92.79 E-value=1.6 Score=39.09 Aligned_cols=95 Identities=11% Similarity=0.071 Sum_probs=59.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++|.+|..++.+.+.. .++|++.+ ++-+.+. .++++..+.+...+... +.
T Consensus 137 g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~--~~~~~~~-~~~~~g~~~~~~~~~~~---~~-------------- 194 (320)
T cd05286 137 GDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTV--SSEEKAE-LARAAGADHVINYRDED---FV-------------- 194 (320)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEc--CCHHHHH-HHHHCCCCEEEeCCchh---HH--------------
Confidence 367999999999999999999887 57777765 3444443 34667766655332211 11
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
+.+.+......+|.+++...| ..+...+.+++.+-++
T Consensus 195 --~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~ 231 (320)
T cd05286 195 --ERVREITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTL 231 (320)
T ss_pred --HHHHHHcCCCCeeEEEECCCc-HhHHHHHHhhccCcEE
Confidence 122233333468999988766 4666666666554443
No 160
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.79 E-value=1.1 Score=40.61 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=34.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|++.|.|+||.||..+.+.+.+. .++|+.+. +|.+.+.+.++++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~--G~~vv~~~--r~~~~~~~~~~~~ 51 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFARE--GAAVALAD--LDAALAERAAAAI 51 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 468999999999999999999876 57777653 4566666555554
No 161
>PRK06841 short chain dehydrogenase; Provisional
Probab=92.77 E-value=0.86 Score=40.86 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=27.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
.|++.|.|+||.||..+...+.+. .++|+.++-
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~--G~~Vi~~~r 47 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAK--GARVALLDR 47 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeC
Confidence 367999999999999999998875 578877653
No 162
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.76 E-value=1.3 Score=39.73 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=31.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
+|.+.|.|+||.||++..+-+.+. .++|+.+. +++-+.+.+...
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~--g~~vi~~~-r~~~~~~~~~~~ 45 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAA--GFDLAIND-RPDDEELAATQQ 45 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe-cCchhHHHHHHH
Confidence 367999999999999999998876 57887765 333344433333
No 163
>PLN02240 UDP-glucose 4-epimerase
Probab=92.74 E-value=0.5 Score=44.70 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=27.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
.|+|.|.|+||.||....+-+.+. .++|+++.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~ 36 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLA--GYKVVVID 36 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe
Confidence 368999999999999999998875 47899885
No 164
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.74 E-value=1.3 Score=40.36 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=30.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q 120 (353)
|++.|.|+||.||....+-+.+. .++|+++. ++-+.+.+.
T Consensus 8 k~vlItGasg~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~~ 47 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAA--GAAVMIVG--RNPDKLAAA 47 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHH
Confidence 68999999999999999988775 57887764 344444433
No 165
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=92.72 E-value=0.34 Score=46.05 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=26.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
||+|.|.|+||+||+....-+.+. .++++.+..
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~--g~~~v~~~~ 33 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINE--TSDAVVVVD 33 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHc--CCCEEEEEe
Confidence 578999999999999999988864 355555443
No 166
>PRK09242 tropinone reductase; Provisional
Probab=92.72 E-value=1.2 Score=40.20 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=33.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|++.|.|+||.||..+.+-+.+. .++|+.+. +|.+.+.+...++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~l 53 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGL--GADVLIVA--RDADALAQARDEL 53 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHH
Confidence 368999999999999999998875 56776664 4555555554443
No 167
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.70 E-value=2.7 Score=41.60 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=38.8
Q ss_pred EeecCCchhHHHHhhcCCCCCCcceEEEEecCCcCCCCChhhhhcCCHHHHhcCCCCCCCCccceecccccchhHH
Q 018592 221 ILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLE 296 (353)
Q Consensus 221 IlPVDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~l~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLE 296 (353)
.+|.|.-..| |+.+.+. ..-|++|+ |+|.+++++..+.- -+-|+=. .|+-+|-..+-||--|
T Consensus 343 ~~~l~~~~~A-~~~~~~~---~~gKvvl~----~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~ 404 (410)
T cd08238 343 IGGLNAAAET-TLNLPGI---PGGKKLIY----TQKPLPLTGIEELA----DKEPEEP--AAIVLENGGIWNKEAE 404 (410)
T ss_pred EecHHHHHHH-HHHhhcc---CCceEEEE----CCCCCCCchhHhhH----hhcCCCh--HHHHHhcCCcCCHHHH
Confidence 4566654444 6666632 34578887 57777776665433 2334322 6888999999998544
No 168
>PRK06128 oxidoreductase; Provisional
Probab=92.70 E-value=1.2 Score=41.75 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=41.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC---HHHHHHHHHhhCCCEEEE-eCccchHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN---ITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsN---v~lL~~Q~~eFkPk~V~i-~de~~~~~l~~~ 143 (353)
|++.|.|+||.||....+-+.+. .++|+...-..+ .+.+.+.++.+..+..++ .|-...+.+++.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 124 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFARE--GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQL 124 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHc--CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 78999999999999999999875 567765433222 344555555555444433 344444444443
No 169
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=92.67 E-value=1.2 Score=43.29 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=39.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkP 126 (353)
.|-+.|-|||..||..|-..+.+. .++|+.. +++.++|.+.+.++..
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~--G~~vvl~--aRR~drL~~la~~~~~ 52 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEA--GAKVVLA--ARREERLEALADEIGA 52 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHC--CCeEEEE--eccHHHHHHHHHhhcc
Confidence 367899999999999999999876 7788764 3678999999999984
No 170
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=92.63 E-value=1.6 Score=38.73 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=30.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q 120 (353)
.|++.|.|+||.||..+..-+.+. .++|+.+. +|.+.+.+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~--g~~v~~~~--r~~~~~~~~ 43 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEE--GAKVAVFD--LNREAAEKV 43 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEec--CCHHHHHHH
Confidence 468999999999999999988875 57777654 344544443
No 171
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.62 E-value=1.3 Score=41.58 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=35.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk 125 (353)
|++.|.|+||.||..+...+.+. .++|+.+ ++|.+.+.+..+++.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHAR--GAKLALV--DLEEAELAALAAELG 54 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhc
Confidence 68999999999999999999876 4676655 367777777777664
No 172
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.49 E-value=1.7 Score=38.71 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=40.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH---hhCCCEE-EEeCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKPQVV-AVRNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~---eFkPk~V-~i~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||....+-+.+. .++|+.+. +|-+.+.+... ...++.. ...|-...+.+++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKE--GAKVVIAD--LNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 368999999999999999988775 67887763 44454444333 3344432 33454444455443
No 173
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.44 E-value=0.67 Score=41.49 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=32.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
||++.|.|+||.||..+..-+.+. .++|+++. +|.+.+.+.++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~--G~~Vi~~~--r~~~~~~~~~~ 43 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA--GARLYLAA--RDVERLERLAD 43 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEe--CCHHHHHHHHH
Confidence 578999999999999999988875 57777764 45555544433
No 174
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.40 E-value=1.8 Score=40.74 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=58.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.+|.|.|++|.+|..++++.+.. .. +|++.+. +-+++....+++..+.+.-.++.. +.+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~--s~~~~~~~~~~lGa~~vi~~~~~~---~~~------------- 215 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICG--SDEKCQLLKSELGFDAAINYKTDN---VAE------------- 215 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcC--CHHHHHHHHHhcCCcEEEECCCCC---HHH-------------
Confidence 68999999999999999998876 45 6777643 234433333347777765433221 111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.++.. ..+|+|+++..|. .+...+.+++.+=++.
T Consensus 216 ---~i~~~~~-~gvd~vid~~g~~-~~~~~~~~l~~~G~iv 251 (345)
T cd08293 216 ---RLRELCP-EGVDVYFDNVGGE-ISDTVISQMNENSHII 251 (345)
T ss_pred ---HHHHHCC-CCceEEEECCCcH-HHHHHHHHhccCCEEE
Confidence 1222222 3589999976664 3566666666554443
No 175
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.37 E-value=1 Score=42.80 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=31.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~ 119 (353)
+||+|+||||=+|+-.++=..+. ..+|+|++ +|-.++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAiv--Rn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIV--RNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEE--eChHhccc
Confidence 47999999999999998876654 68899998 66666654
No 176
>PRK06197 short chain dehydrogenase; Provisional
Probab=92.36 E-value=1 Score=42.25 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=30.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~ 119 (353)
.|++.|.|+||.||..+.+.+.+. .++|+.+ .+|.+.+.+
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~--G~~vi~~--~r~~~~~~~ 55 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAK--GAHVVLA--VRNLDKGKA 55 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC--CCEEEEE--eCCHHHHHH
Confidence 378999999999999999988876 5677664 345555443
No 177
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.32 E-value=1.7 Score=39.18 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=32.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
|++.|.|+||.||..+.+-+.+. .++|+++. +|-+.+.+...+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~--g~~v~~~~--r~~~~~~~~~~~ 45 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA--GDRVLALD--IDAAALAAFADA 45 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 57999999999999999988875 57787765 455555444443
No 178
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.30 E-value=1.3 Score=39.37 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=27.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
||++.|.|+||.||+...+-+.+. .++|++++-
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r 33 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLER--GWQVTATVR 33 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhC--CCEEEEEeC
Confidence 578999999999999999888875 578887753
No 179
>PLN02572 UDP-sulfoquinovose synthase
Probab=92.27 E-value=0.63 Score=47.23 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=27.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
+|+|.|.|+||+||....+-+.+. .++|+++.
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~--G~~V~~~d 78 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKR--GYEVAIVD 78 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEe
Confidence 467999999999999999988875 57788863
No 180
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.27 E-value=2.2 Score=38.80 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=32.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
.|++.|.|+||.||.....-+.+. .++|++++ +|.+.+.+..++
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 48 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAA--GARLLLVG--RNAEKLEALAAR 48 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHH
Confidence 367999999999999999988875 57887765 455555444333
No 181
>PRK05650 short chain dehydrogenase; Provisional
Probab=92.26 E-value=1.5 Score=40.06 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=31.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
|++.|.|+||.||....+.+.+. .++|+.+. ++.+.+.+...+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 43 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWARE--GWRLALAD--VNEEGGEETLKL 43 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 47999999999999999988876 56776543 455666555443
No 182
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.25 E-value=1.3 Score=40.40 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=30.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q 120 (353)
|.+.|.|+||.||.+..+-+.+. .++|+++. ++.+.+.+.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~ 43 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKK--GYLVIATM--RNPEKQENL 43 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhC--CCEEEEEe--CCHHHHHHH
Confidence 57999999999999999988765 68888764 444444433
No 183
>PRK12937 short chain dehydrogenase; Provisional
Probab=92.24 E-value=2.1 Score=37.98 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=39.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHH---HHHHHHhhCCCEEEE-eCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVAV-RNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~l---L~~Q~~eFkPk~V~i-~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||....+.+.+. .++|+.+ ..++-+. +.+.++++..+...+ .|-...+.+++.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~--g~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAAD--GFAVAVN-YAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRL 73 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEe-cCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 468999999999999999998876 5667654 3444333 344444444443332 344444444443
No 184
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=92.24 E-value=0.8 Score=45.83 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=32.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL 116 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~l 116 (353)
+.||+|+|. |.||+..+..+.++|+ |+++|+...+.-+.
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd-~ELVgV~dr~~~~~ 41 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPD-MELVGVFSRRGAET 41 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCC-cEEEEEEcCCcHHH
Confidence 358999997 9999999999998876 99999877764343
No 185
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.22 E-value=0.43 Score=49.40 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=36.7
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
+|.|.|+||+||+..+.-+.+++..++|.+++-......+.++...+
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~ 48 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYW 48 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhc
Confidence 69999999999999999988766679999998655555555544443
No 186
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.13 E-value=1.6 Score=39.34 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=39.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH---HHhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q---~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
.|++.|.|+||.||..+.+-+.+. .++|+.+. +|.+.+.+. +++...+...+ .|-...+.+++
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFARE--GAKVVVGA--RRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 368999999999999999988875 56777664 445554444 33334444333 34444444443
No 187
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.13 E-value=0.58 Score=45.62 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=40.8
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCE
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~ 128 (353)
.++++.|-|||+=||...-+.+.++ .|.|+-++ ++.++|.+++++..=++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~--g~~liLva--R~~~kL~~la~~l~~~~ 54 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR--GYNLILVA--RREDKLEALAKELEDKT 54 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CcHHHHHHHHHHHHHhh
Confidence 4578999999999999999999987 56666554 78899988888776555
No 188
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=92.11 E-value=0.27 Score=45.22 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=36.7
Q ss_pred EEEecCChHhHHHHHHHHhCCCceEEEEEeecC-----CHHHHHHHHHhhCCCEEE
Q 018592 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-----NITLLADQVKRFKPQVVA 130 (353)
Q Consensus 80 ~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags-----Nv~lL~~Q~~eFkPk~V~ 130 (353)
.|.|+||+||++..+-+.+. .++|+.+..+. +.+.|.+..+.++|++|+
T Consensus 1 lItGa~GfiG~~l~~~L~~~--g~~v~~~~~~~~~Dl~~~~~l~~~~~~~~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEAL--GFTNLVLRTHKELDLTRQADVEAFFAKEKPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhC--CCcEEEeeccccCCCCCHHHHHHHHhccCCCEEE
Confidence 38999999999999999775 46666554433 455677777788898876
No 189
>PRK12746 short chain dehydrogenase; Provisional
Probab=92.11 E-value=1.2 Score=40.00 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=34.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
|++.|.|+||.||....+-+.+. ..+|+.+. .+|.+.+.+...++
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~--G~~v~i~~-~r~~~~~~~~~~~~ 51 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLAND--GALVAIHY-GRNKQAADETIREI 51 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHHHHHH
Confidence 68999999999999999988775 56665543 45666666666554
No 190
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=92.10 E-value=1.8 Score=40.21 Aligned_cols=95 Identities=8% Similarity=0.056 Sum_probs=60.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++|++|..++.+.+.. ..+|++++. +-+.. +.++++.++.+.-.++.. +.
T Consensus 140 ~~~vlI~ga~g~ig~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~v~~~~~~~---~~-------------- 197 (329)
T cd08250 140 GETVLVTAAAGGTGQFAVQLAKLA--GCHVIGTCS--SDEKA-EFLKSLGCDRPINYKTED---LG-------------- 197 (329)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHc--CCeEEEEeC--cHHHH-HHHHHcCCceEEeCCCcc---HH--------------
Confidence 357999999999999999999987 466777653 33333 344667776554332211 11
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
+.+.+... ..+|.|++.+.| ..+...+..+..+-++.
T Consensus 198 --~~~~~~~~-~~vd~v~~~~g~-~~~~~~~~~l~~~g~~v 234 (329)
T cd08250 198 --EVLKKEYP-KGVDVVYESVGG-EMFDTCVDNLALKGRLI 234 (329)
T ss_pred --HHHHHhcC-CCCeEEEECCcH-HHHHHHHHHhccCCeEE
Confidence 12222222 358999998655 67777788886665543
No 191
>PLN02427 UDP-apiose/xylose synthase
Probab=92.08 E-value=0.24 Score=48.13 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=29.0
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
..+++|.|.|+||+||.+.++-+.+.. .++|+++.
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~ 46 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTET-PHKVLALD 46 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcC-CCEEEEEe
Confidence 445789999999999999999887652 47899986
No 192
>PRK06483 dihydromonapterin reductase; Provisional
Probab=92.08 E-value=1.6 Score=38.81 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=39.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~ 142 (353)
+|++.|.|+||.||..+..-+.+. .++|+.+. +|-+.+.+++++.+.. +.-.|-...+.+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~ 63 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQ--GQPVIVSY--RTHYPAIDGLRQAGAQ-CIQADFSTNAGIMA 63 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHC--CCeEEEEe--CCchhHHHHHHHcCCE-EEEcCCCCHHHHHH
Confidence 468999999999999999988865 67888764 3334445555544432 23334444444443
No 193
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.08 E-value=1.8 Score=43.90 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=83.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.||.|+.-++++=+-.-+++...|+ .+|++.+ .|-....+++++++|+.+.+..| .-+.-|
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~-i~vv~~a--~ng~~a~~~~~~~~PDVi~ld~e----------------mp~mdg 62 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPD-IEVVGTA--RNGREAIDKVKKLKPDVITLDVE----------------MPVMDG 62 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCC-eEEEEec--CCHHHHHHHHHhcCCCEEEEecc----------------cccccH
Confidence 4799999999999999999999886 8888877 56788899999999999998643 123446
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccce
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL 203 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESL 203 (353)
-+-+.++.+....-+||..-..--|-.-|+.|++.|.-=.+ .|++.
T Consensus 63 l~~l~~im~~~p~pVimvsslt~~g~~~t~~al~~gAvD~i-~kp~~ 108 (350)
T COG2201 63 LEALRKIMRLRPLPVIMVSSLTEEGAEATLEALELGAVDFI-AKPSG 108 (350)
T ss_pred HHHHHHHhcCCCCcEEEEeccccccHHHHHHHHhcCcceee-cCCCc
Confidence 66677777766666777777888889999999999944444 44443
No 194
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.05 E-value=1.5 Score=39.05 Aligned_cols=63 Identities=22% Similarity=0.150 Sum_probs=37.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH---HHHhhCCCEEEE-eCccchHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD---QVKRFKPQVVAV-RNESLLDEIK 141 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~---Q~~eFkPk~V~i-~de~~~~~l~ 141 (353)
.|++.|.|+||.||.+..+-+.+. .++|+.+ ..++-+.+.+ .+++...+...+ .|-...+++.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~--g~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 72 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKE--GSLVVVN-AKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCE 72 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHC--CCEEEEE-eCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHH
Confidence 478999999999999999988764 5676653 3334344433 344444443322 3433333443
No 195
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=92.00 E-value=1.6 Score=39.85 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=41.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh---CCCEEE-EeCccchHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVA-VRNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF---kPk~V~-i~de~~~~~l~~~ 143 (353)
.|++.|.|+||.||.++..-+.++ .++|+.+ .++-+.+.++..++ ..+... ..|-...+.++..
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~--G~~vv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKA--GATIVFN--DINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAM 77 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCeEEEE--eCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 368999999999999999988876 5777765 34455555554444 333332 3454445555543
No 196
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.98 E-value=0.24 Score=48.60 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=29.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS 112 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags 112 (353)
.|+|.|+|+||+||..+...+.+. .++|++++-..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~--G~~V~~v~r~~ 55 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAE--GHYIIASDWKK 55 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhC--CCEEEEEEecc
Confidence 368999999999999999999875 68999987443
No 197
>PRK06198 short chain dehydrogenase; Provisional
Probab=91.91 E-value=1.3 Score=39.87 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=24.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVAL 108 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaL 108 (353)
.|++.|.|+||.||.+..+.+.+. ..+ |+.+
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~--G~~~V~~~ 37 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAER--GAAGLVIC 37 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCCeEEEE
Confidence 367999999999999999998875 455 5543
No 198
>PRK07904 short chain dehydrogenase; Provisional
Probab=91.89 E-value=2.5 Score=38.83 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=27.6
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
..+|++.|.|+||-||....+-+.+.. .++|+.++
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~ 40 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAA 40 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEe
Confidence 456789999999999999998877642 37787653
No 199
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.87 E-value=1.8 Score=36.46 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=34.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkP 126 (353)
.++|.|+|+ |.+|.....-+.+.. ..+|.. . ++|.+.+.+.++++..
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v-~-~r~~~~~~~~~~~~~~ 65 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVI-V-NRTLEKAKALAERFGE 65 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEE-E-cCCHHHHHHHHHHHhh
Confidence 468999997 999999999888763 233433 2 5677777777777654
No 200
>PLN02253 xanthoxin dehydrogenase
Probab=91.86 E-value=1.9 Score=39.57 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=32.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|++.|.|++|.||..+..-+.+. .++|+.+. ++-+.+.+.+.+.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~--G~~v~~~~--~~~~~~~~~~~~~ 62 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKH--GAKVCIVD--LQDDLGQNVCDSL 62 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHh
Confidence 468999999999999999988875 57777653 3444444444444
No 201
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.85 E-value=1.6 Score=42.31 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=41.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH---HHHHhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~---~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
.|++.|.|+||.||..+.+-+.+. .++|+.++ +|-+.+. +++++...+...+ .|-...+.+++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~--G~~Vvl~~--R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~ 74 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARR--GAKVVLLA--RGEEGLEALAAEIRAAGGEALAVVADVADAEAVQA 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHH
Confidence 468999999999999999988775 57777654 4555444 4444545554433 35444444444
No 202
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=91.85 E-value=1.9 Score=38.91 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=33.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|++.|.|+||.||.++..-+.+. .++|+.. .+|.+.+.+...+.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~--G~~vvl~--~r~~~~~~~~~~~l 53 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEY--GAEIIIN--DITAERAELAVAKL 53 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc--CCEEEEE--cCCHHHHHHHHHHH
Confidence 468999999999999999999875 5777754 35556655554443
No 203
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=91.84 E-value=1.9 Score=39.22 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=32.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
+++.|.|++|.||..+..-+.+. .++|+.+ .+|-+.+.+...+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~l 44 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK--GARVVIS--SRNEENLEKALKEL 44 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHH
Confidence 36999999999999999988875 5776654 35566665555443
No 204
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.81 E-value=1.9 Score=38.32 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=33.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|++.|.|+||.||....+-+.+. .++|+.+. +|-+.+.+...+.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~--G~~Vi~~~--r~~~~~~~~~~~~ 51 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKE--GVNVGLLA--RTEENLKAVAEEV 51 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 368999999999999999988765 56777754 4555555544443
No 205
>PRK05854 short chain dehydrogenase; Provisional
Probab=91.69 E-value=1.5 Score=41.87 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=32.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
.|.+.|.|+||.||..+...+.+. .++|+.+ .+|.+.+.+.++
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~--G~~Vil~--~R~~~~~~~~~~ 56 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA--GAEVILP--VRNRAKGEAAVA 56 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHH
Confidence 478999999999999999999875 5777664 356555544433
No 206
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.67 E-value=2.2 Score=38.60 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=38.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~ 143 (353)
|++.|.|+||.||.++.+.+.+. .++|+.+ .+++-+.+.+ .++.+.. ....|-...+.+++.
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~--G~~v~~~-~~~~~~~~~~-l~~~~~~-~~~~Dl~~~~~~~~~ 69 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLRE--GAKVAVL-YNSAENEAKE-LREKGVF-TIKCDVGNRDQVKKS 69 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEE-eCCcHHHHHH-HHhCCCe-EEEecCCCHHHHHHH
Confidence 78999999999999999998876 5677654 3444444433 3332322 223344444444443
No 207
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=91.65 E-value=0.24 Score=48.75 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=29.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (353)
||+|+|+||.+|+..++.+.+||+ |+|+++...
T Consensus 2 kVaIvGatG~~G~~L~~~l~~~~~-~~l~~v~~~ 34 (341)
T TIGR00978 2 RVAVLGATGLVGQKFVKLLAKHPY-FELAKVVAS 34 (341)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-ceEEEEEEC
Confidence 799999999999999999999876 899998654
No 208
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=91.64 E-value=2.5 Score=37.70 Aligned_cols=83 Identities=23% Similarity=0.215 Sum_probs=49.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH---HHHHhhCCCEEE-EeCccchHHHHHHhhcCCCCc
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVA-VRNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~---~Q~~eFkPk~V~-i~de~~~~~l~~~l~~~~~~~ 151 (353)
.|.+.|.|+||.||..+.+-+.+. ..+|+.+.. ++.+... +++++...+.+. ..|-...+.+.+.+.
T Consensus 3 ~k~~lVtG~s~giG~~~a~~l~~~--G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 73 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLHKD--GFKVVAGCG-PNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFD------ 73 (246)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc--CCEEEEEcC-CChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH------
Confidence 367999999999999999999887 567777543 3333333 333333444433 245444444544331
Q ss_pred EEEecHHHHHHHhcCCCCcEEEEec
Q 018592 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~~~D~Vv~AI 176 (353)
.+.+. ..++|+||+..
T Consensus 74 -------~~~~~--~~~id~li~~a 89 (246)
T PRK12938 74 -------KVKAE--VGEIDVLVNNA 89 (246)
T ss_pred -------HHHHH--hCCCCEEEECC
Confidence 12221 24688888873
No 209
>PRK05993 short chain dehydrogenase; Provisional
Probab=91.64 E-value=1.9 Score=39.83 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=32.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~ 121 (353)
.|++.|.|+||.||..+..-+.+. .++|++++ +|.+.+.+..
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~--G~~Vi~~~--r~~~~~~~l~ 45 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSD--GWRVFATC--RKEEDVAALE 45 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHH
Confidence 368999999999999999888764 67887754 5666665443
No 210
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.54 E-value=3.2 Score=39.76 Aligned_cols=105 Identities=15% Similarity=0.258 Sum_probs=62.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|+|+ |+||..++.+.+.. ..+|+++. ++-+++ +.++++..+.+.-..+...+.+.+.+... .
T Consensus 167 g~~VlV~G~-G~vG~~a~~~a~~~--G~~vi~~~--~~~~~~-~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~-------t 233 (349)
T TIGR03201 167 GDLVIVIGA-GGVGGYMVQTAKAM--GAAVVAID--IDPEKL-EMMKGFGADLTLNPKDKSAREVKKLIKAF-------A 233 (349)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCeEEEEc--CCHHHH-HHHHHhCCceEecCccccHHHHHHHHHhh-------c
Confidence 468999999 99999999999987 35777653 344554 35678887765433222222232222110 0
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeee
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLA 198 (353)
+..|+ ....|.|+.+..+..++.-.+.+++.|=++.+.
T Consensus 234 ~~~g~-----d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 234 KARGL-----RSTGWKIFECSGSKPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred ccCCC-----CCCcCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence 00111 011458888876666676677788777666543
No 211
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.52 E-value=2 Score=40.48 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=61.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
..+|.|+|+ |.||..++.+.+... .+ |+++. ++-+++ +.++++..+.+.-..+...+
T Consensus 164 g~~vlV~G~-G~vG~~~~~~ak~~G--~~~vi~~~--~~~~~~-~~~~~~ga~~~i~~~~~~~~---------------- 221 (339)
T cd08239 164 RDTVLVVGA-GPVGLGALMLARALG--AEDVIGVD--PSPERL-ELAKALGADFVINSGQDDVQ---------------- 221 (339)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC--CCEEEEEC--CCHHHH-HHHHHhCCCEEEcCCcchHH----------------
Confidence 358999986 999999999998863 45 77654 344444 45678887665432211111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.++.....+|+|+++..+-..+...+..++.+-++.
T Consensus 222 ----~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 222 ----EIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLV 259 (339)
T ss_pred ----HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 22233333368999999777666677777777765554
No 212
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=91.49 E-value=2.1 Score=38.30 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
|++.|.|+||.||....+-+.+. .++|+.+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~ 31 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKD--GFAVAVAD 31 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 57999999999999999988875 56777664
No 213
>PRK07576 short chain dehydrogenase; Provisional
Probab=91.48 E-value=2.2 Score=39.16 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=49.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh---CCCEEEE-eCccchHHHHHHhhcCCCCc
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF---kPk~V~i-~de~~~~~l~~~l~~~~~~~ 151 (353)
.|++.|.|+||.||....+-+.+. ..+|+++. ++.+.+.+..+++ .++...+ .|-...+.++..+.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~------ 78 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARA--GANVAVAS--RSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA------ 78 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH------
Confidence 368999999999999999988875 56777664 4555555544333 3333322 34444444444321
Q ss_pred EEEecHHHHHHHhcCCCCcEEEEec
Q 018592 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~~~D~Vv~AI 176 (353)
.+. .....+|.|++..
T Consensus 79 -------~~~--~~~~~iD~vi~~a 94 (264)
T PRK07576 79 -------QIA--DEFGPIDVLVSGA 94 (264)
T ss_pred -------HHH--HHcCCCCEEEECC
Confidence 111 1224688888765
No 214
>PRK06139 short chain dehydrogenase; Provisional
Probab=91.46 E-value=1.6 Score=42.44 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=41.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH---HhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~---~eFkPk~V~i-~de~~~~~l~~ 142 (353)
.|.+.|.|+||.||..+...+.+. .++|+.++ +|-+.|.+.. +++..+..++ .|-...+.++.
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~--G~~Vvl~~--R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~ 73 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARR--GARLVLAA--RDEEALQAVAEECRALGAEVLVVPTDVTDADQVKA 73 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHH
Confidence 368999999999999999999876 56777543 5666665544 4445554332 34444444443
No 215
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=91.33 E-value=0.71 Score=43.86 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~--G~~V~~~~r 38 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSK--GYEVHGIIR 38 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEec
Confidence 56999999999999999998875 578888753
No 216
>PRK07775 short chain dehydrogenase; Provisional
Probab=91.31 E-value=2.3 Score=39.22 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=31.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
+|.+.|.|+||.||..+.+-+.+. .++|+.++ +|.+.+.+...
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~--G~~V~~~~--r~~~~~~~~~~ 52 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAA--GFPVALGA--RRVEKCEELVD 52 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 368999999999999999988875 57777654 35555544433
No 217
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.30 E-value=2.3 Score=38.27 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
|++.|.|+||.||..+..-+.+. .++|+.+.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~--g~~vi~~~ 33 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEE--GYRVAVAD 33 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEE
Confidence 67999999999999999999876 57776653
No 218
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.28 E-value=2.2 Score=38.96 Aligned_cols=81 Identities=10% Similarity=0.111 Sum_probs=50.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH---HHHHhhCCCEEEE-eCccchHHHHHHhhcCCCCcE
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPE 152 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~---~Q~~eFkPk~V~i-~de~~~~~l~~~l~~~~~~~~ 152 (353)
|.+.|.|+|+-||.++...+.+. .++|+.. ++|.+.+. +++++...+.+.+ .|-...+.++..+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~--G~~V~~~--~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~------- 74 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARL--GATLILC--DQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFD------- 74 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHC--CCEEEEE--cCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHH-------
Confidence 68999999999999999999886 5777664 44556554 4455555554333 34444444444321
Q ss_pred EEecHHHHHHHhcCC-CCcEEEEec
Q 018592 153 ILAGEQGVIEAARHP-DAVTVVTGI 176 (353)
Q Consensus 153 v~~G~~gl~~~a~~~-~~D~Vv~AI 176 (353)
.+.+ +.. .+|++++..
T Consensus 75 ------~~~~--~~g~~iD~li~na 91 (227)
T PRK08862 75 ------AIEQ--QFNRAPDVLVNNW 91 (227)
T ss_pred ------HHHH--HhCCCCCEEEECC
Confidence 1111 223 689998885
No 219
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=91.25 E-value=0.58 Score=43.47 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=29.5
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsN 113 (353)
+|.|.|+||+||...++-+.+.....+|+++.-..+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~ 36 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAAS 36 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCC
Confidence 488999999999999998887655578999875444
No 220
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.21 E-value=1.9 Score=39.25 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=60.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++|++|..++.+.+.. .++|++++... +. .++++++..+.+...+++ +.+
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~----~~~------------- 200 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSP--ER-AALLKELGADEVVIDDGA----IAE------------- 200 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCH--HH-HHHHHhcCCcEEEecCcc----HHH-------------
Confidence 368999999999999999999987 47777765443 33 345567777665432111 111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.++ ...+|.+++.+.| ..+...+..+..+-++.
T Consensus 201 ---~i~~~--~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v 235 (320)
T cd08243 201 ---QLRAA--PGGFDKVLELVGT-ATLKDSLRHLRPGGIVC 235 (320)
T ss_pred ---HHHHh--CCCceEEEECCCh-HHHHHHHHHhccCCEEE
Confidence 12223 2358999987665 56777777776654443
No 221
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=91.21 E-value=1.2 Score=42.61 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=27.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
|+|.|.|+||+||.+..+-+.+..+.++|+++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 679999999999999999887754346787764
No 222
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=91.14 E-value=2.3 Score=38.45 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=31.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
|++.|.|+||.||.+..+-+.++ .++|+.+. +|.+.+.+..+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~ 54 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEA--GARVVLSA--RKAEELEEAAA 54 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHH
Confidence 68999999999999999998875 45775543 45555544443
No 223
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.11 E-value=2.4 Score=40.20 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=58.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh-hCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e-FkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
..+|.|.|++|.+|..++++.+.. .++|++.+.. -++ .+.+++ +..+.+.-.+.+ ..+.+
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~--~~~-~~~~~~~lGa~~vi~~~~~--~~~~~------------ 212 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGS--DEK-VDLLKNKLGFDDAFNYKEE--PDLDA------------ 212 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCC--HHH-HHHHHHhcCCceeEEcCCc--ccHHH------------
Confidence 368999999999999999999986 5677775532 233 334444 777666532211 01111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.+... ..+|+|++.+.| ..+...+.+++.+-++.
T Consensus 213 ----~i~~~~~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 213 ----ALKRYFP-NGIDIYFDNVGG-KMLDAVLLNMNLHGRIA 248 (338)
T ss_pred ----HHHHhCC-CCcEEEEECCCH-HHHHHHHHHhccCcEEE
Confidence 1122222 358999998655 56666777776655443
No 224
>PRK06179 short chain dehydrogenase; Provisional
Probab=91.08 E-value=1.7 Score=39.45 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=29.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL 117 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL 117 (353)
.|++.|.|+||.||.....-+.+. .++|++++ +|.+.+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~--g~~V~~~~--r~~~~~ 41 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA--GYRVFGTS--RNPARA 41 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEe--CChhhc
Confidence 467999999999999999888875 68887765 444443
No 225
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.05 E-value=0.32 Score=48.95 Aligned_cols=37 Identities=35% Similarity=0.624 Sum_probs=28.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHh-CCCceE-EEEEeecCC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAE-HEDKFR-VVALAAGSN 113 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~-~pd~F~-VvaLaagsN 113 (353)
+++|+|+|+||.+|+..++.+.+ |+. |+ +..++-.++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~-~~~~~~~AS~rS 39 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFP-FEELVLLASARS 39 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCC-cceEEEEecccc
Confidence 46899999999999999999998 765 55 444443333
No 226
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=91.03 E-value=1.5 Score=41.23 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=25.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
+|.|.|+||.||....+-+.+. .++|+++.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC--CCeEEEEe
Confidence 6999999999999999988764 57888874
No 227
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.97 E-value=2.7 Score=38.69 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=33.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|.+.|.|+||.||..+.+-+.+. .++|+.+ .+|.+.+.+..+++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~ 52 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARA--GADVILL--SRNEENLKKAREKI 52 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHH
Confidence 467999999999999999988875 5777664 35666665544443
No 228
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.95 E-value=2.4 Score=41.04 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=59.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.+|.|.|++|.||..++.+.+.. ..+|++.+ ++-+++....+++..+.+.-.+++ ..+.+
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~--~~~~k~~~~~~~lGa~~vi~~~~~--~~~~~-------------- 219 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH--GCYVVGSA--GSSQKVDLLKNKLGFDEAFNYKEE--PDLDA-------------- 219 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEc--CCHHHHHHHHHhcCCCEEEECCCc--ccHHH--------------
Confidence 58999999999999999999986 46777654 333443332336777776543211 01111
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.++.. ..+|+|++++.| ..+...+.+++.|-++.
T Consensus 220 --~i~~~~~-~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 220 --ALKRYFP-EGIDIYFDNVGG-DMLDAALLNMKIHGRIA 255 (348)
T ss_pred --HHHHHCC-CCcEEEEECCCH-HHHHHHHHHhccCCEEE
Confidence 1122222 258999987654 45666667776665554
No 229
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.93 E-value=2.6 Score=37.25 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=31.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
.|+|.|.|+||.||....+.+.+. .++|++++ ++-+.+.+..+
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~--G~~V~~~~--r~~~~~~~~~~ 47 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKE--GAQVCINS--RNENKLKRMKK 47 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 368999999999999999998875 67888764 34455544433
No 230
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=90.83 E-value=0.95 Score=40.54 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=42.1
Q ss_pred eeEEEEec-CChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE
Q 018592 77 KPISVLGS-TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV 131 (353)
Q Consensus 77 k~I~ILGS-TGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i 131 (353)
+||+++|| +||.+...|+-+.+....++++++..++.-..-..-+.+..+....+
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~ 56 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVA 56 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEec
Confidence 58999975 56889999999998878899999998876666556666666655443
No 231
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=90.79 E-value=2.7 Score=35.07 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=49.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHH---HhhCCCEEEE-eCccchHHHHHHhhcCCCCc
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQV---KRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags-Nv~lL~~Q~---~eFkPk~V~i-~de~~~~~l~~~l~~~~~~~ 151 (353)
|.+.|.|+||=||.+..+-..+. ....|+. ..++ +.+.+.+.+ +....+...+ .|-...+.+++.+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-g~~~v~~-~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~------ 72 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-GARVVIL-TSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIE------ 72 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTEEEEE-EESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHH------
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CceEEEE-eeeccccccccccccccccccccccccccccccccccccccc------
Confidence 67999999999999999999887 3344444 4433 345444444 4334544444 34444455554432
Q ss_pred EEEecHHHHHHHhcCCCCcEEEEec
Q 018592 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~~~D~Vv~AI 176 (353)
.+. .+....|++++.-
T Consensus 73 -------~~~--~~~~~ld~li~~a 88 (167)
T PF00106_consen 73 -------EVI--KRFGPLDILINNA 88 (167)
T ss_dssp -------HHH--HHHSSESEEEEEC
T ss_pred -------ccc--ccccccccccccc
Confidence 111 2345689999873
No 232
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=90.77 E-value=4.2 Score=38.09 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=62.4
Q ss_pred CCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcE
Q 018592 73 WDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPE 152 (353)
Q Consensus 73 ~~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~ 152 (353)
+...++|.|+|+ |++|..++.+.+.... .+|++.+.. -+.+. .+++|..+.+.-.++..
T Consensus 165 ~~~~~~vlI~g~-~~vg~~~~~~a~~~g~-~~v~~~~~~--~~~~~-~~~~~g~~~~~~~~~~~---------------- 223 (340)
T cd05284 165 LDPGSTVVVIGV-GGLGHIAVQILRALTP-ATVIAVDRS--EEALK-LAERLGADHVLNASDDV---------------- 223 (340)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHhCC-CcEEEEeCC--HHHHH-HHHHhCCcEEEcCCccH----------------
Confidence 334578999995 5599999999998632 677776533 33333 34677766654332221
Q ss_pred EEecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 153 ILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 153 v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.+.++.....+|+|++.+.|-..+...+.++..+-++.
T Consensus 224 ----~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 224 ----VEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYV 263 (340)
T ss_pred ----HHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEE
Confidence 1223334443468999998776567777788887665544
No 233
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.77 E-value=0.29 Score=49.71 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=26.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE---EEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR---VVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~---VvaLa 109 (353)
|.+|+|+||||.+|...++.+.+||+ |. ++.++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~-f~~~~l~~~s 36 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEND-FDLIEPVFFS 36 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCC-CCcCcEEEec
Confidence 46899999999999999996677775 77 66644
No 234
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=90.70 E-value=5.2 Score=36.80 Aligned_cols=117 Identities=21% Similarity=0.154 Sum_probs=71.9
Q ss_pred eeEEEEec-CChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccc------hHHHHHHhhcCCC
Q 018592 77 KPISVLGS-TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL------LDEIKEALANVEE 149 (353)
Q Consensus 77 k~I~ILGS-TGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~------~~~l~~~l~~~~~ 149 (353)
+||+||-| +||-....++-+.+.....+|+++..++.-....+.+++..-.+..+..++. -.++.+.+...+.
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 47898887 6777777777777765568899887765445557888888877766542211 1234444444444
Q ss_pred CcEEEecHHHHH--HHhcCCCCcEEEEe----ccCccCcHHHHHHHHcCCc
Q 018592 150 KPEILAGEQGVI--EAARHPDAVTVVTG----IVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 150 ~~~v~~G~~gl~--~~a~~~~~D~Vv~A----IvG~aGL~pT~~Ai~~gK~ 194 (353)
+.-|+.|---+. ++.+.+.. -++|- +--+-|..|...|+.+|.+
T Consensus 81 D~iv~~~~~~il~~~~l~~~~~-~~iNiHpslLP~yrG~~p~~~ai~~g~~ 130 (190)
T TIGR00639 81 DLVVLAGFMRILGPTFLSRFAG-RILNIHPSLLPAFPGLHAVEQALEAGVK 130 (190)
T ss_pred CEEEEeCcchhCCHHHHhhccC-CEEEEeCCcccCCCCccHHHHHHHcCCC
Confidence 555666653221 12222211 24553 3447889999999999853
No 235
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=90.69 E-value=0.42 Score=39.44 Aligned_cols=33 Identities=48% Similarity=0.846 Sum_probs=29.5
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (353)
||+|+|+||-+|...++.+.++|+ |+++++...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~-~~l~av~~~ 33 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD-FEVVALAAS 33 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC-ceEEEEEec
Confidence 589999999999999999999875 999999553
No 236
>PLN02503 fatty acyl-CoA reductase 2
Probab=90.56 E-value=1.6 Score=46.96 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=33.2
Q ss_pred CCCCCCeeEEEEecCChHhHHHHHHH-HhCCCceEEEEEeecCC
Q 018592 71 KTWDGPKPISVLGSTGSIGTQTLDIV-AEHEDKFRVVALAAGSN 113 (353)
Q Consensus 71 ~~~~~~k~I~ILGSTGSIGtqTLdVI-~~~pd~F~VvaLaagsN 113 (353)
..+-..|+|.|.|+||++|+..++-+ +..|+.-+|.+|.=.++
T Consensus 114 ~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~ 157 (605)
T PLN02503 114 AEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKD 157 (605)
T ss_pred hhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 44445689999999999999999755 56787668888875443
No 237
>PRK07062 short chain dehydrogenase; Provisional
Probab=90.53 E-value=2.5 Score=38.35 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=30.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
|.+.|.|+||.||.....-+.+. .++|+.++ +|.+.+.+..+
T Consensus 9 k~~lItGas~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~ 50 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEA--GASVAICG--RDEERLASAEA 50 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHH
Confidence 68999999999999999888875 56776543 45555544333
No 238
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=90.49 E-value=2.7 Score=39.48 Aligned_cols=93 Identities=18% Similarity=0.306 Sum_probs=59.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|+|++|++|..++.+.+.. ..+|++++ .++ + .+.++++..+++...+.....+
T Consensus 178 g~~vlI~g~~g~ig~~~~~~a~~~--g~~vi~~~-~~~--~-~~~~~~~g~~~~~~~~~~~~~~---------------- 235 (350)
T cd08274 178 GETVLVTGASGGVGSALVQLAKRR--GAIVIAVA-GAA--K-EEAVRALGADTVILRDAPLLAD---------------- 235 (350)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEe-Cch--h-hHHHHhcCCeEEEeCCCccHHH----------------
Confidence 468999999999999999999987 46677765 332 2 3455677765443222221111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+......+|+|++.+.| ..+...+.+++.+-++.
T Consensus 236 -----~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v 270 (350)
T cd08274 236 -----AKALGGEPVDVVADVVGG-PLFPDLLRLLRPGGRYV 270 (350)
T ss_pred -----HHhhCCCCCcEEEecCCH-HHHHHHHHHhccCCEEE
Confidence 111222358999988665 56777777777665543
No 239
>PRK09291 short chain dehydrogenase; Provisional
Probab=90.42 E-value=1.2 Score=39.84 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=34.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec-CCHHHHHHHHHhhCCC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQ 127 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag-sNv~lL~~Q~~eFkPk 127 (353)
|+|.|.|+||.||.....-+.+. .++|++++-. .+.+.+.+.+....++
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~ 52 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARK--GHNVIAGVQIAPQVTALRAEAARRGLA 52 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence 57999999999999999988875 5788876522 1233444444444444
No 240
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=90.34 E-value=2.3 Score=42.68 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=66.5
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecHH
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQ 158 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~~ 158 (353)
|+|.|- |.||+..++.+.+.| +++|||+.- .+.+.++..+++++-+.+. ..+....++.+ .+..+ .|.
T Consensus 1 VaInG~-GrIGr~varav~~~~-d~elVaVnD-~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~------~~l~v-~g~- 68 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQD-DMKLVGVTK-TSPDFEAYRAKELGIPVYA-ASEEFIPRFEE------AGIEV-AGT- 68 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCC-CcEEEEEec-CChHHHHHHHHHhCCCEEe-ecCCcceEecc------CceEe-cCC-
Confidence 467776 999999999998874 599999986 7788888888888766655 22211111111 12223 232
Q ss_pred HHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 159 GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 159 gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
+.++. .++|+|+.+-..+-++.---.-++.|++
T Consensus 69 -~eeLl--~~vDiVve~Tp~~~~~~na~~~~~~Gak 101 (333)
T TIGR01546 69 -LEDLL--EKVDIVVDATPGGIGAKNKPLYEKAGVK 101 (333)
T ss_pred -HHHHh--hcCCEEEECCCCCCChhhHHHHHhCCcC
Confidence 55555 3699999998777777655555566644
No 241
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=90.33 E-value=0.63 Score=47.22 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=34.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V 129 (353)
|.||+|+|+||..|.+.+.++.+||+ +++...+ .+.. --+-.++..|...
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~-ve~~~~s-s~~~--~g~~~~~~~p~l~ 51 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPD-VELILIS-SRER--AGKPVSDVHPNLR 51 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC-eEEEEee-chhh--cCCchHHhCcccc
Confidence 56899999999999999999999997 7744433 2221 1222445555554
No 242
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=90.24 E-value=3.5 Score=37.23 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=38.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHH---HHHHHHhhCCCEEE-EeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~l---L~~Q~~eFkPk~V~-i~de~~~~~l~~ 142 (353)
.|++.|.|+||.||..+.+.+.++ .++|+.+. ++.+. +.++.++...+... ..|-...+.+++
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~--G~~vv~~~--r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~ 77 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATA--GASVVVSD--INADAANHVVDEIQQLGGQAFACRCDITSEQELSA 77 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 478999999999999999998876 56777643 33343 34444443333322 234333444443
No 243
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=90.23 E-value=0.27 Score=49.89 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR 104 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~ 104 (353)
|+|+|+||||-+|+..++++.++|+ |.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~-fp 27 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD-FD 27 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC-Cc
Confidence 5799999999999999999996554 44
No 244
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=90.21 E-value=0.33 Score=44.80 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=27.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (353)
+|.|+|+||.||..+++-+.+. .++|.+++-+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~ 32 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRS 32 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCC
Confidence 4899999999999999988764 6889888743
No 245
>PRK06123 short chain dehydrogenase; Provisional
Probab=90.19 E-value=3.9 Score=36.44 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=29.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q 120 (353)
|.+.|.|+||.||....+-+.+. .+.|+ +...++-+.+.++
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~--G~~vv-~~~~~~~~~~~~~ 43 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAER--GYAVC-LNYLRNRDAAEAV 43 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEE-EecCCCHHHHHHH
Confidence 57999999999999998888775 46665 4444555544443
No 246
>PLN02214 cinnamoyl-CoA reductase
Probab=90.13 E-value=1.7 Score=42.05 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
+|+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r 42 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER--GYTVKGTVR 42 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeC
Confidence 468999999999999999988775 588988763
No 247
>PRK08251 short chain dehydrogenase; Provisional
Probab=90.11 E-value=3.5 Score=36.78 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=30.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q 120 (353)
.|++.|.|+||.||....+-+.+.. .+|+.++ +|.+.+.+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g--~~v~~~~--r~~~~~~~~ 42 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG--RDLALCA--RRTDRLEEL 42 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEe--CCHHHHHHH
Confidence 3679999999999999999998874 5666553 455554443
No 248
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=90.10 E-value=3.3 Score=39.51 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=59.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEE
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI 153 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v 153 (353)
..++|.|.| +|.+|..++.+.+.. .. +|++.+ ++-+.+ ++++++..+.+.-.++....++.
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~--G~~~v~~~~--~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~------------ 238 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLA--GARRVIVID--GSPERL-ELAREFGADATIDIDELPDPQRR------------ 238 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHc--CCCeEEEEc--CCHHHH-HHHHHcCCCeEEcCcccccHHHH------------
Confidence 345799998 599999999999986 45 666654 333333 45567776655433222111111
Q ss_pred EecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 154 ~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
+.+.++.....+|+|++.+.|...+...+..++.+-+
T Consensus 239 ----~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~ 275 (361)
T cd08231 239 ----AIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGT 275 (361)
T ss_pred ----HHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCE
Confidence 1334444445689999986555566667776655433
No 249
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=90.08 E-value=1.3 Score=44.84 Aligned_cols=52 Identities=33% Similarity=0.404 Sum_probs=38.9
Q ss_pred eeEEEEecCChHhHHHHHHHH-hCCCceEEE---EEeecCCHHHHHHHHHhhCCCEEEE
Q 018592 77 KPISVLGSTGSIGTQTLDIVA-EHEDKFRVV---ALAAGSNITLLADQVKRFKPQVVAV 131 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~-~~pd~F~Vv---aLaagsNv~lL~~Q~~eFkPk~V~i 131 (353)
+++.|-|..|+||.+-+.-+- ++|| ++|+ .|+...|.+-|..... +|++.++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~DkLTYAgn~~~l~~~~~--~~~~~fv 56 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDKLTYAGNLENLADVED--SPRYRFV 56 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEecccccCCHHHHHhhhc--CCCceEE
Confidence 478999999999999987654 5676 5444 5688889999876655 4555554
No 250
>PRK06114 short chain dehydrogenase; Provisional
Probab=90.04 E-value=4.5 Score=36.62 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=35.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC--CHHHHHHHHHhhCCCE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQV 128 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags--Nv~lL~~Q~~eFkPk~ 128 (353)
.|.+.|.|+||.||..+..-+.+. .++|+.+.-.. ..+.+.++++....+.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~l~~~~~~~ 60 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQA--GADVALFDLRTDDGLAETAEHIEAAGRRA 60 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCce
Confidence 368999999999999999998875 57888765332 2344555554444333
No 251
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=90.00 E-value=0.43 Score=50.60 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=30.5
Q ss_pred CCCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 71 ~~~~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
++....++|.|.|+||+||+...+-+.+. ..++|+++.-
T Consensus 310 ~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~-~g~~V~~l~r 348 (660)
T PRK08125 310 CSAKRRTRVLILGVNGFIGNHLTERLLRD-DNYEVYGLDI 348 (660)
T ss_pred hhhhcCCEEEEECCCchHHHHHHHHHHhC-CCcEEEEEeC
Confidence 33333457999999999999999988764 2589999874
No 252
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=89.98 E-value=2.5 Score=39.09 Aligned_cols=94 Identities=23% Similarity=0.361 Sum_probs=59.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++|++|..++.+.+.. .++|++.+.. -++ .+.++++..+.+.-.++. . .
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~--~~~-~~~~~~~g~~~v~~~~~~---~-~-------------- 203 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKL--GYEVVASTGK--ADA-ADYLKKLGAKEVIPREEL---Q-E-------------- 203 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCeEEEEecC--HHH-HHHHHHcCCCEEEcchhH---H-H--------------
Confidence 358999999999999999999987 5677766433 233 344467776555322111 0 1
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
+.+.++ ....+|.|++.+.| ..+...+.+++.+-++.
T Consensus 204 --~~~~~~-~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i 240 (326)
T cd08289 204 --ESIKPL-EKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVA 240 (326)
T ss_pred --HHHHhh-ccCCcCEEEECCcH-HHHHHHHHHhhcCCEEE
Confidence 111222 12358999998655 67777788876655543
No 253
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=89.95 E-value=3.1 Score=36.67 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=31.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q 120 (353)
|.+.|.|+||.||..+.+-+.+. .++|+++.. ++-+.+.+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~r-~~~~~~~~~ 41 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKD--GYRVAANCG-PNEERAEAW 41 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeC-CCHHHHHHH
Confidence 57899999999999999999875 577877654 455554443
No 254
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=89.94 E-value=3.8 Score=36.23 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=31.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~ 121 (353)
+|++.|.|+||.||..+.+-+.+. .++|+.+.-+.+ +.+.+..
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~--g~~vi~~~r~~~-~~~~~~~ 44 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLND--GYRVIATYFSGN-DCAKDWF 44 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCcH-HHHHHHH
Confidence 468999999999999999988875 478887754333 4444333
No 255
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=89.90 E-value=0.33 Score=44.05 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=25.5
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
|.|+|+||+||+...+-+.+. .++|++++
T Consensus 1 vlVtGatG~iG~~l~~~L~~~--g~~V~~~~ 29 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD--GHEVTILT 29 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc--CCEEEEEe
Confidence 579999999999999988764 58999987
No 256
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=89.88 E-value=4.7 Score=32.78 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEH 99 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~ 99 (353)
|++.|.|+||+||....+.+.+.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~ 23 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAER 23 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHh
Confidence 57899999999999999998875
No 257
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.87 E-value=3.7 Score=36.38 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=31.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
.+++.|.|++|.||..+...+.+. .++|+.+. ++-+.+.++.++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~--G~~vi~~~--r~~~~~~~~~~~ 48 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQK--GAKLALID--LNQEKLEEAVAE 48 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 357999999999999999998876 46666543 444555554443
No 258
>PRK07985 oxidoreductase; Provisional
Probab=89.74 E-value=3.7 Score=38.75 Aligned_cols=64 Identities=13% Similarity=0.001 Sum_probs=39.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC---HHHHHHHHHhhCCCEEE-EeCccchHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN---ITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsN---v~lL~~Q~~eFkPk~V~-i~de~~~~~l~~ 142 (353)
|++.|.|+||.||.++.+-+.+. .++|+.+.-..+ .+.+.+..++...+... ..|-...+.+..
T Consensus 50 k~vlITGas~gIG~aia~~L~~~--G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 117 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYARE--GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARS 117 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHH
Confidence 68999999999999999999876 577876432222 34454444444333322 234444444443
No 259
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=89.66 E-value=3.7 Score=36.05 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=25.5
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (353)
+.|.|+||.||....+-+.+. .++|+.++.+
T Consensus 1 vlItG~~g~iG~~la~~l~~~--G~~v~~~~r~ 31 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKE--GAKVIITYRS 31 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 478999999999999998875 5788777644
No 260
>PRK05876 short chain dehydrogenase; Provisional
Probab=89.66 E-value=3.6 Score=38.35 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=33.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|.+.|.|+||.||....+-+.+. .++|+.. .+|.+.+.+.++++
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~--G~~Vv~~--~r~~~~l~~~~~~l 50 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARR--GARVVLG--DVDKPGLRQAVNHL 50 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHH
Confidence 467999999999999999988875 5677653 35566666655544
No 261
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=89.64 E-value=2 Score=40.47 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (353)
.|+|.|.|+||+||....+-+.+. .++|++++-+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~ 38 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLR--GYTVKATVRD 38 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEECC
Confidence 468999999999999999988875 5788877543
No 262
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=89.56 E-value=0.4 Score=47.47 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=28.5
Q ss_pred eEEEEecCChHhHHHHHHHHh--CCCceEEEEEeecCC
Q 018592 78 PISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSN 113 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~--~pd~F~VvaLaagsN 113 (353)
+|+|+||||.+|...++.+.+ || .++++.++..++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp-~~~l~~~as~~~ 37 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFP-IDKLVLLASDRS 37 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCC-hhhEEEEecccc
Confidence 589999999999999999988 66 467776655543
No 263
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=89.56 E-value=0.42 Score=44.48 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=27.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r 36 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVR 36 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEc
Confidence 68999999999999999988875 578888764
No 264
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=89.54 E-value=5.4 Score=36.69 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=57.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
...+|.|.|++|.+|..++.+.+.+ ..+|++++ ++-+. .+.++++..+.+.-..+...
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~--~~~~~-~~~~~~~g~~~~~~~~~~~~----------------- 199 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAA--GATVVGAA--GGPAK-TALVRALGADVAVDYTRPDW----------------- 199 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEe--CCHHH-HHHHHHcCCCEEEecCCccH-----------------
Confidence 3457999999999999999999987 46777764 23333 34456676655432211111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
.+.+.+......+|+|++.+.|-. ....+.++..+-+
T Consensus 200 --~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~ 236 (324)
T cd08244 200 --PDQVREALGGGGVTVVLDGVGGAI-GRAALALLAPGGR 236 (324)
T ss_pred --HHHHHHHcCCCCceEEEECCChHh-HHHHHHHhccCcE
Confidence 112222333345899999876654 4666777655433
No 265
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.49 E-value=3.4 Score=41.17 Aligned_cols=62 Identities=23% Similarity=0.211 Sum_probs=44.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIK 141 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~ 141 (353)
|++.|.|+||.||..+.+.+.+. ..+|+.+....+.+.+.+.+.+.+...+. .|-...+.++
T Consensus 211 ~~vlItGasggIG~~la~~l~~~--Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~-~Dv~~~~~~~ 272 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARD--GAHVVCLDVPAAGEALAAVANRVGGTALA-LDITAPDAPA 272 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--CCEEEEEeCCccHHHHHHHHHHcCCeEEE-EeCCCHHHHH
Confidence 68999999999999999998876 57888887666777777777766544433 3433333333
No 266
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=89.49 E-value=4.5 Score=43.75 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=104.5
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEE---------------eecCCHHHHHHHHHhhCCCEEEEeCccch-
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL---------------AAGSNITLLADQVKRFKPQVVAVRNESLL- 137 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaL---------------aagsNv~lL~~Q~~eFkPk~V~i~de~~~- 137 (353)
.+.+++.|+|| |+.|.+.++-.+++|+ |++||. -.-.-.+ +.+++++.+.+.+.++-++.-
T Consensus 114 ~~~~r~lIiGA-G~ag~~l~r~~~~~~~-~~pV~fiDdd~~~~g~~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~~~ 190 (588)
T COG1086 114 DNRIRLLIIGA-GSAGDLLLRALRRDPE-YTPVAFLDDDPDLTGMKIRGVPVLGRIE-IERVVEELGIQLILIAIPSASQ 190 (588)
T ss_pred cCCCceEEEcC-chHHHHHHHHHHhCCC-cceEEEECCChhhcCCEEeceeeechhH-HHHHHHHcCCceEEEecCCCCH
Confidence 45578999998 7889999999999988 887764 3334456 899999999998888765543
Q ss_pred ---HHHHHHhhcCCCCcEEEecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecc------c
Q 018592 138 ---DEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG------P 208 (353)
Q Consensus 138 ---~~l~~~l~~~~~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG------~ 208 (353)
.++-+.+...+..++++..-+.+.+.... =-|+-+.=+=|-.=..|-.+.+.+ .+-||-.||.|| .
T Consensus 191 ~~~~~i~~~l~~~~~~v~~lP~~~~l~~~~~~-lreI~ieDLLgR~pV~~d~~~i~~----~~~gK~vLVTGagGSiGse 265 (588)
T COG1086 191 EERRRILLRLARTGIAVRILPQLTDLKDLNGQ-LREIEIEDLLGRPPVALDTELIGA----MLTGKTVLVTGGGGSIGSE 265 (588)
T ss_pred HHHHHHHHHHHhcCCcEEecCcHHHHHHhccc-cccCCHHHHhCCCCCCCCHHHHHh----HcCCCEEEEeCCCCcHHHH
Confidence 22333344455677888777776652221 123333333444444444444443 355677788876 4
Q ss_pred chhHHhhhcCCeEeecCCchhHHHHhhc
Q 018592 209 FVLPLAHKHNIKILPADSEHSAIFQCIQ 236 (353)
Q Consensus 209 li~~~a~~~~~~IlPVDSEHsAIfQ~L~ 236 (353)
+..+.++.+-.+|+=.|.--.++||.-+
T Consensus 266 l~~qil~~~p~~i~l~~~~E~~~~~i~~ 293 (588)
T COG1086 266 LCRQILKFNPKEIILFSRDEYKLYLIDM 293 (588)
T ss_pred HHHHHHhcCCCEEEEecCchHHHHHHHH
Confidence 6677777777889999988888888754
No 267
>PRK05855 short chain dehydrogenase; Validated
Probab=89.46 E-value=3.2 Score=41.51 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=32.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
+++.|.|+||.||.++.+-+.+. .++|+.++ +|.+.+.+.+++
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~ 358 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFARE--GAEVVASD--IDEAAAERTAEL 358 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 57999999999999999998875 56766543 466666554443
No 268
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=89.45 E-value=3 Score=41.94 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=66.6
Q ss_pred eeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeecCCHHHHHHHHH------hhCCCEEEEeCccchHHHHHHhhcCC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVE 148 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~--~pd~F~VvaLaagsNv~lL~~Q~~------eFkPk~V~i~de~~~~~l~~~l~~~~ 148 (353)
.||+|.|. |=||+..|+++.+ +|++++|+|+---...+-++-..+ +|+. -|-..+.. +.-.+
T Consensus 2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~-~v~~~~~~--------l~v~g 71 (336)
T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAW-DVRQERDQ--------LFVGD 71 (336)
T ss_pred eEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCC-cEEecCCE--------EEECC
Confidence 47999999 9999999999876 468899999865556666655443 1211 11111110 10011
Q ss_pred CCcEEEecHHHHHHHh-cCCCCcEEEEeccCccCcHHHHHHHHcC-CcEeee
Q 018592 149 EKPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 198 (353)
Q Consensus 149 ~~~~v~~G~~gl~~~a-~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g-K~IaLA 198 (353)
..++++.. ....++- ...++|+|+.+-.++.--+-.-.++++| |+|-+.
T Consensus 72 ~~i~v~~~-~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iS 122 (336)
T PRK13535 72 DAIRLLHE-RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFS 122 (336)
T ss_pred EEEEEEEc-CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEec
Confidence 22334322 2233221 1247999999987777767677888998 444443
No 269
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.45 E-value=1.9 Score=41.42 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=27.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
++|.|.|+||+||....+-+.+. .++|+++.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~--G~~V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQR--GYTVHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe
Confidence 47999999999999999998875 58899874
No 270
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=89.45 E-value=0.28 Score=48.73 Aligned_cols=31 Identities=32% Similarity=0.677 Sum_probs=27.2
Q ss_pred eeEE-EEecCChHhHHHHHHHHhCCCceEEEEE
Q 018592 77 KPIS-VLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (353)
Q Consensus 77 k~I~-ILGSTGSIGtqTLdVI~~~pd~F~VvaL 108 (353)
|+++ |||+||++|+-.+.++..||. |++--|
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~-f~ikvL 35 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPY-FSIKVL 35 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCc-ceeeee
Confidence 5566 999999999999999999986 777766
No 271
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=89.44 E-value=3.7 Score=37.59 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=31.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
.|++.|.|+||.||.....-+.+. .++|+.+. +|-+.+.+..++
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 53 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARA--GAKVAILD--RNQEKAEAVVAE 53 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 378999999999999999998875 46776643 445544444433
No 272
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.37 E-value=3.2 Score=38.61 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=58.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
++|.|.|+ |.||..++.+.+.. .++ |++. .++-+++ +.++++..+.+.-.+ +. .
T Consensus 122 ~~VlV~G~-G~vG~~~~~~ak~~--G~~~Vi~~--~~~~~r~-~~a~~~Ga~~~i~~~-~~----~-------------- 176 (280)
T TIGR03366 122 RRVLVVGA-GMLGLTAAAAAAAA--GAARVVAA--DPSPDRR-ELALSFGATALAEPE-VL----A-------------- 176 (280)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCEEEEE--CCCHHHH-HHHHHcCCcEecCch-hh----H--------------
Confidence 57999987 99999999999876 455 5554 3444554 567888876654211 10 1
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
+.+.++.....+|+|+++..+-..+.-.+..++.+=++
T Consensus 177 --~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~i 214 (280)
T TIGR03366 177 --ERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTA 214 (280)
T ss_pred --HHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEE
Confidence 11222323336899999876666677777777666444
No 273
>PRK14982 acyl-ACP reductase; Provisional
Probab=89.28 E-value=0.82 Score=45.93 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=32.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
|+|.|+|+|||||.....-+.+...-.+|+.+ +++.+.+.+...++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv--~R~~~rl~~La~el 201 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLV--ARQQERLQELQAEL 201 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEE--cCCHHHHHHHHHHh
Confidence 67999999999999999999743111234332 46777777766655
No 274
>PRK07023 short chain dehydrogenase; Provisional
Probab=89.26 E-value=0.44 Score=42.66 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=28.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (353)
|+++.|.|+||.||.++..-+.+. .++|+.++-+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~--G~~v~~~~r~ 34 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP--GIAVLGVARS 34 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC--CCEEEEEecC
Confidence 457999999999999999998875 5788876543
No 275
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.22 E-value=3.3 Score=41.96 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=24.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
.|+|.|+|+ |-+|..+.+.+++. .++|+..-
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~--G~~V~~~d 46 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLEL--GARVTVVD 46 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC--CCEEEEEe
Confidence 468999997 88999999999875 56776643
No 276
>PRK05884 short chain dehydrogenase; Provisional
Probab=89.22 E-value=2.7 Score=37.84 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=40.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHH
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~ 142 (353)
|+.|.|+||.||......+.+. .++|+.+ .+|.+.+.+.+++.+.+.+ ..|-...+.+++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~--g~~v~~~--~r~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~ 61 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRND--GHKVTLV--GARRDDLEVAAKELDVDAI-VCDNTDPASLEE 61 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHhccCcEE-ecCCCCHHHHHH
Confidence 6999999999999999988765 4677765 4577777776666554433 234443444443
No 277
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=89.20 E-value=5.7 Score=36.58 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=54.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..++.|.|+||++|..+..+.+.. .++|++++ ++-+. .+.++++..+.+.-. .+ +.+.+
T Consensus 163 ~~~vlI~ga~g~vG~~~~~~a~~~--g~~v~~~~--~~~~~-~~~~~~~~~~~~~~~-~~----~~~~~----------- 221 (332)
T cd08259 163 GDTVLVTGAGGGVGIHAIQLAKAL--GARVIAVT--RSPEK-LKILKELGADYVIDG-SK----FSEDV----------- 221 (332)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEe--CCHHH-HHHHHHcCCcEEEec-HH----HHHHH-----------
Confidence 458999999999999999999987 57777765 33333 334455554443311 11 22211
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
.+. .++|+|++.+. ...+...+.++..+-+
T Consensus 222 -----~~~---~~~d~v~~~~g-~~~~~~~~~~~~~~g~ 251 (332)
T cd08259 222 -----KKL---GGADVVIELVG-SPTIEESLRSLNKGGR 251 (332)
T ss_pred -----Hhc---cCCCEEEECCC-hHHHHHHHHHhhcCCE
Confidence 111 26899998754 4457777777755433
No 278
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=89.06 E-value=3 Score=38.23 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=25.2
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
+|.|+|+||.||..+.+-+.++ .++|+++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~--g~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES--GHEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC--CCeEEEEe
Confidence 5899999999999999988775 57787663
No 279
>PRK06484 short chain dehydrogenase; Validated
Probab=89.04 E-value=6.2 Score=39.81 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=44.8
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
..|.+.|.|+||-||..+.+-+.+. .++|+.+ .+|.+.+.+..++...+...+ .|-...+.+++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 332 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAA--GDRLLII--DRDAEGAKKLAEALGDEHLSVQADITDEAAVES 332 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCceeEEEccCCCHHHHHH
Confidence 4578999999999999999888876 4677765 367777777777776555432 34444444444
No 280
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.02 E-value=6.9 Score=37.10 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=23.7
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
+|+|+| +|.||.+...-+++. .++|.+..
T Consensus 2 ~I~IIG-~G~mG~sla~~L~~~--g~~V~~~d 30 (279)
T PRK07417 2 KIGIVG-LGLIGGSLGLDLRSL--GHTVYGVS 30 (279)
T ss_pred eEEEEe-ecHHHHHHHHHHHHC--CCEEEEEE
Confidence 699999 799999998888876 46776654
No 281
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=89.00 E-value=1.7 Score=43.04 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=28.4
Q ss_pred EEEEecCChHhHHHHHHHHhC-CCceEEEEEeecCCHHHHHHHHHhh
Q 018592 79 ISVLGSTGSIGTQTLDIVAEH-EDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~-pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
|.|.|+|||||.....-+.++ |. +|+.+. +|-..|.+.-+++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~--~lil~d--~~E~~l~~l~~~l 43 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPK--KLILFD--RDENKLYELEREL 43 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-S--EEEEEE--S-HHHHHHHHHHC
T ss_pred CEEEccccHHHHHHHHHHHhcCCC--eEEEeC--CChhHHHHHHHHH
Confidence 679999999999988777654 43 344433 5556666666666
No 282
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=89.00 E-value=0.49 Score=48.13 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=27.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
++||.|.|+||+||.+.++-+.+. .++|+++.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~--G~~V~~ld 151 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGR--GDEVIVID 151 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC--CCEEEEEe
Confidence 457999999999999999988775 68899875
No 283
>PRK06953 short chain dehydrogenase; Provisional
Probab=88.99 E-value=4.4 Score=35.95 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=30.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~ 118 (353)
||++.|.|+||.||..+.+-+.+. .++|+.+. +|.+.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~--G~~v~~~~--r~~~~~~ 39 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRAD--GWRVIATA--RDAAALA 39 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhC--CCEEEEEE--CCHHHHH
Confidence 578999999999999999988765 57877753 4555544
No 284
>PRK06484 short chain dehydrogenase; Validated
Probab=88.96 E-value=3.9 Score=41.27 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=44.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEE-eCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i-~de~~~~~l~~ 142 (353)
.|.+.|.|+|+-||..+.+-+.+. .++|+.+ .++.+.+.+..++...+...+ .|-...+.+++
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 68 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARA--GDQVVVA--DRNVERARERADSLGPDHHALAMDVSDEAQIRE 68 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCceeEEEeccCCHHHHHH
Confidence 378999999999999999998876 5677665 356788888877776554333 34343444444
No 285
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=88.87 E-value=4.7 Score=37.18 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=56.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++|+||..++.+.+.. ..+++..+... +. .+.++++..+.+.-.++. .+.
T Consensus 140 g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~---~~~-------------- 197 (324)
T cd08292 140 GQWLIQNAAGGAVGKLVAMLAAAR--GINVINLVRRD--AG-VAELRALGIGPVVSTEQP---GWQ-------------- 197 (324)
T ss_pred CCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecCH--HH-HHHHHhcCCCEEEcCCCc---hHH--------------
Confidence 357999999999999999999987 45676654322 22 233344555444322211 111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
+.+.++.....+|+|++...| ..+...+.+++.+-++.
T Consensus 198 --~~i~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v 235 (324)
T cd08292 198 --DKVREAAGGAPISVALDSVGG-KLAGELLSLLGEGGTLV 235 (324)
T ss_pred --HHHHHHhCCCCCcEEEECCCC-hhHHHHHHhhcCCcEEE
Confidence 122333333468999987655 45666667776554444
No 286
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.80 E-value=4.5 Score=38.02 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=59.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCc-cchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de-~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.+|.|.|++|+||..++.+.+.. ..+|++.+. +-++ .+.++++..+.+.-.++ +...+.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~--s~~~-~~~~~~lGa~~vi~~~~~~~~~~~--------------- 199 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAG--SDEK-VAYLKKLGFDVAFNYKTVKSLEET--------------- 199 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCCCEEEeccccccHHHH---------------
Confidence 58999999999999999999876 457776553 3333 44557788877664332 111111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
+.++ ....+|+|++++.| ..+...+..++.|=++.
T Consensus 200 ----~~~~-~~~gvdvv~d~~G~-~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 200 ----LKKA-SPDGYDCYFDNVGG-EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred ----HHHh-CCCCeEEEEECCCH-HHHHHHHHHhCcCcEEE
Confidence 1111 12358999987654 44566666666554443
No 287
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=88.72 E-value=3.7 Score=37.24 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=39.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH---hhCCCEEE-EeCccchHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKPQVVA-VRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~---eFkPk~V~-i~de~~~~~l~~ 142 (353)
.|++.|.|++|.||....+.+.+. ..+|+. .+.++.+.+.++.. ....+... ..|-...+.+++
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~--G~~vvi-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~ 74 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKE--KAKVVI-NYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVN 74 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEE-EeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHH
Confidence 468999999999999999988876 456664 45556555444433 33333322 234444444444
No 288
>PRK07677 short chain dehydrogenase; Provisional
Probab=88.59 E-value=5.2 Score=36.11 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=30.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
|++.|.|+||.||......+.+. ..+|+.+. +|.+.+.+...
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~--G~~Vi~~~--r~~~~~~~~~~ 43 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEE--GANVVITG--RTKEKLEEAKL 43 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 67999999999999999999876 45776653 44444444433
No 289
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=88.46 E-value=5.7 Score=37.95 Aligned_cols=63 Identities=11% Similarity=0.245 Sum_probs=40.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC---CCEEEE-eCccchHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK---PQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk---Pk~V~i-~de~~~~~l~~ 142 (353)
|.+.|.|+|+.||..+..-+.+.. .++|+.++ +|.+.+.+.+++.. .++.++ .|-...+.++.
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G-~~~V~l~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 70 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATG-EWHVIMAC--RDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQ 70 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcC-CCEEEEEe--CCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 579999999999999998888753 16776653 56676665555542 222222 45444544544
No 290
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.39 E-value=3.8 Score=39.46 Aligned_cols=94 Identities=12% Similarity=0.142 Sum_probs=57.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCc-cchHHHHHHhhcCCCCcEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEI 153 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de-~~~~~l~~~l~~~~~~~~v 153 (353)
..+|.|.|+ |.||..++.+.+.. ..+ |+++.. +-++ .+.++++..+.+.-..+ +..+.
T Consensus 177 g~~VlV~G~-g~vG~~a~~~ak~~--G~~~Vi~~~~--~~~~-~~~~~~~Ga~~~i~~~~~~~~~~-------------- 236 (358)
T TIGR03451 177 GDSVAVIGC-GGVGDAAIAGAALA--GASKIIAVDI--DDRK-LEWAREFGATHTVNSSGTDPVEA-------------- 236 (358)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEcC--CHHH-HHHHHHcCCceEEcCCCcCHHHH--------------
Confidence 467999985 99999999999976 454 666533 3333 34557787766543222 11111
Q ss_pred EecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 154 ~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
+.++.....+|+|++++.+-..+.-.+.+++.|=++
T Consensus 237 ------i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~i 272 (358)
T TIGR03451 237 ------IRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTV 272 (358)
T ss_pred ------HHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEE
Confidence 222222335899999876555666666666655443
No 291
>PRK07069 short chain dehydrogenase; Validated
Probab=88.38 E-value=4.5 Score=36.00 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=31.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
++.|.|+||.||....+-+.+. .++|+.+.- ++.+.+.+..+++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~--G~~v~~~~r-~~~~~~~~~~~~~ 44 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQ--GAKVFLTDI-NDAAGLDAFAAEI 44 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHC--CCEEEEEeC-CcchHHHHHHHHH
Confidence 4899999999999999998875 578876653 2244444444333
No 292
>PLN02206 UDP-glucuronate decarboxylase
Probab=88.35 E-value=0.57 Score=47.77 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
+||.|.|+||+||...++-+.+. .++|+++.
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~--G~~V~~ld 150 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMAR--GDSVIVVD 150 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHC--cCEEEEEe
Confidence 57999999999999999988875 67899874
No 293
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.28 E-value=5 Score=36.82 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=40.0
Q ss_pred CeeEEEEec--CChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCE-EEEeCccchHHHHH
Q 018592 76 PKPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV-VAVRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGS--TGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~-V~i~de~~~~~l~~ 142 (353)
.|.+.|.|+ ++-||..+..-+.+. .++|+...-++|.+++.+.++++..+. .+..|-...+.+++
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 74 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQ--GAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLAS 74 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHC--CCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHH
Confidence 368999999 899999999888765 567765443444555555555554332 22234444444443
No 294
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=88.27 E-value=4.8 Score=36.81 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=33.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
+.+.|.|+||.||..+.+-+.+. .++|+.+ ++++-+.+.+..+++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~--G~~V~~~-~~~~~~~~~~~~~~l 46 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQE--GYRVVLH-YHRSAAAASTLAAEL 46 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhC--CCeEEEE-cCCcHHHHHHHHHHH
Confidence 46899999999999999988875 5677765 555666665555554
No 295
>PRK08703 short chain dehydrogenase; Provisional
Probab=88.24 E-value=1.3 Score=39.46 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=32.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e 123 (353)
|++.|.|+||.||....+.+.+. .++|+.++ +|.+.+.+...+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 49 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAA--GATVILVA--RHQKKLEKVYDA 49 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc--CCEEEEEe--CChHHHHHHHHH
Confidence 68999999999999999999875 57777654 555655554444
No 296
>PRK07577 short chain dehydrogenase; Provisional
Probab=88.17 E-value=4 Score=36.03 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=26.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
|++.|.|+||.||.+...-+.+. .++|+++.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~--G~~v~~~~ 34 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANL--GHQVIGIA 34 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEEe
Confidence 67999999999999999988875 47787765
No 297
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=88.10 E-value=6.9 Score=35.45 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=56.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.++|.|.|++|.+|..++.+.+.. ..+|+.++.. -+.+.. .+++..+.+.-.+.. .+
T Consensus 145 ~~~vli~g~~~~~g~~~~~~~~~~--g~~v~~~~~~--~~~~~~-~~~~g~~~~~~~~~~---~~--------------- 201 (328)
T cd08268 145 GDSVLITAASSSVGLAAIQIANAA--GATVIATTRT--SEKRDA-LLALGAAHVIVTDEE---DL--------------- 201 (328)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCC--HHHHHH-HHHcCCCEEEecCCc---cH---------------
Confidence 357999999999999999999876 4667665432 344333 355554443322211 11
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
.+.+.+......+|.+++...| ..+...+.++..+=++
T Consensus 202 -~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~ 239 (328)
T cd08268 202 -VAEVLRITGGKGVDVVFDPVGG-PQFAKLADALAPGGTL 239 (328)
T ss_pred -HHHHHHHhCCCCceEEEECCch-HhHHHHHHhhccCCEE
Confidence 1122333333358999988666 6666667766554443
No 298
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.05 E-value=5 Score=38.17 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=60.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.++|.|+|+ |.+|..++.+.+.. ..+++..+ .++-+++. .++++..+.+.-.++....++
T Consensus 161 g~~vlV~G~-g~vG~~~~~~a~~~--G~~~v~~~-~~~~~~~~-~~~~~Ga~~~i~~~~~~~~~~--------------- 220 (347)
T PRK10309 161 GKNVIIIGA-GTIGLLAIQCAVAL--GAKSVTAI-DINSEKLA-LAKSLGAMQTFNSREMSAPQI--------------- 220 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEE-CCCHHHHH-HHHHcCCceEecCcccCHHHH---------------
Confidence 468999985 99999999999987 45533222 34555554 457787766543222112222
Q ss_pred cHHHHHHHhcCCCCc-EEEEeccCccCcHHHHHHHHcCCcEeee
Q 018592 156 GEQGVIEAARHPDAV-TVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (353)
Q Consensus 156 G~~gl~~~a~~~~~D-~Vv~AIvG~aGL~pT~~Ai~~gK~IaLA 198 (353)
.++.....+| +|++++.+...+.-.+.+++.|-++.+.
T Consensus 221 -----~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 221 -----QSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred -----HHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 2222223466 8889876666777778888887665443
No 299
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=88.05 E-value=2 Score=38.59 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=30.8
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHH
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~ 119 (353)
..|++.|.|+||.||..+..-+.+. .++|+++. +|.+.+.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~--G~~Vi~~~--r~~~~~~~ 51 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARH--GATVILLG--RTEEKLEA 51 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCcEEEEe--CCHHHHHH
Confidence 3468999999999999999998875 57888764 34444433
No 300
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=88.00 E-value=11 Score=34.55 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=60.1
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEE
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI 153 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v 153 (353)
....+|.|.|++|.||..+..+.+.. ..+|++++.. -+. .+++++|..+.+.-..+.. +.
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~--g~~v~~~~~~--~~~-~~~~~~~g~~~~~~~~~~~---~~------------ 196 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLL--GFKTINVVRR--DEQ-VEELKALGADEVIDSSPED---LA------------ 196 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecC--hHH-HHHHHhcCCCEEecccchh---HH------------
Confidence 33468999999999999999999986 5777765533 344 3455777776554332211 11
Q ss_pred EecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 154 ~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
+.+.+......+|+|++...| ..+...+..++.+=++
T Consensus 197 ----~~~~~~~~~~~~d~vl~~~g~-~~~~~~~~~l~~~g~~ 233 (323)
T cd05282 197 ----QRVKEATGGAGARLALDAVGG-ESATRLARSLRPGGTL 233 (323)
T ss_pred ----HHHHHHhcCCCceEEEECCCC-HHHHHHHHhhCCCCEE
Confidence 112222233358899987655 4456667777655443
No 301
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.95 E-value=3.9 Score=38.82 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=35.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC--CHHHHHHHHHhhCCCEEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVAV 131 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags--Nv~lL~~Q~~eFkPk~V~i 131 (353)
.|++.|.|++|.||.....-+.+. ..+|+...-+. ..+.+.++++....+...+
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~--Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~ 67 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARL--GATVVVNDVASALDASDVLDEIRAAGAKAVAV 67 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEecCCchhHHHHHHHHHHhcCCeEEEE
Confidence 367999999999999998888876 45666543222 2445555565555554443
No 302
>PLN02650 dihydroflavonol-4-reductase
Probab=87.92 E-value=0.73 Score=44.07 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=28.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
.|+|.|.|+||+||+...+-+.+. .++|+++.-
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~--G~~V~~~~r 37 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLER--GYTVRATVR 37 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHC--CCEEEEEEc
Confidence 468999999999999999988875 578988763
No 303
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=87.87 E-value=8.2 Score=36.70 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=58.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++|++|..++.+.+.. .++|++.+ .. +++ +.+++|..+.+.-.... .+.+
T Consensus 155 ~~~vlI~ga~g~vg~~~~~~a~~~--G~~v~~~~-~~--~~~-~~~~~~g~~~v~~~~~~---~~~~------------- 212 (339)
T cd08249 155 GKPVLIWGGSSSVGTLAIQLAKLA--GYKVITTA-SP--KNF-DLVKSLGADAVFDYHDP---DVVE------------- 212 (339)
T ss_pred CCEEEEEcChhHHHHHHHHHHHHc--CCeEEEEE-Cc--ccH-HHHHhcCCCEEEECCCc---hHHH-------------
Confidence 468999999999999999999987 56788776 32 333 23366776555432211 1111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~ 191 (353)
.+.++.. ..+|+|++...+-..+...+.+++.
T Consensus 213 ---~l~~~~~-~~~d~vl~~~g~~~~~~~~~~~l~~ 244 (339)
T cd08249 213 ---DIRAATG-GKLRYALDCISTPESAQLCAEALGR 244 (339)
T ss_pred ---HHHHhcC-CCeeEEEEeeccchHHHHHHHHHhc
Confidence 1222332 3589999876554788888888886
No 304
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=87.80 E-value=2.8 Score=39.35 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=27.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
..|++.|.|+||.||.+..+-+.+. .++|++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~--G~~V~~~~ 36 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFR--GYTINATV 36 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEE
Confidence 4578999999999999999988765 57887765
No 305
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.74 E-value=4.7 Score=41.15 Aligned_cols=153 Identities=13% Similarity=0.166 Sum_probs=99.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCC-CceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~p-d~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
.-|+.|+|+ |.|+.-.+..+-.-| .+++|+|++.. ..+...+.|++++-. +++++
T Consensus 6 ~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fAq~~~~~----------------------~~k~y 61 (351)
T KOG2741|consen 6 TIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADP-SLERAKEFAQRHNIP----------------------NPKAY 61 (351)
T ss_pred eeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHHHHhcCCC----------------------CCccc
Confidence 458999987 456655555555455 37999999988 567666666666521 23344
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeec--ccchhHHhhhcCCeEe-ecCCchhHH
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKIL-PADSEHSAI 231 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~a--G~li~~~a~~~~~~Il-PVDSEHsAI 231 (353)
. +.+++++.+++|+|+.++-=..=-+-...++.+||.|++ -|=.=... -.-|.++|++.|..+. =.=+-|+=.
T Consensus 62 ~---syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~-EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~ 137 (351)
T KOG2741|consen 62 G---SYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLC-EKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPR 137 (351)
T ss_pred c---CHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEe-cccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcH
Confidence 3 456678899999999988777777778889999999543 22111111 1224567777776543 333445544
Q ss_pred HHhh----cCCCCCCcceEEEEecCCcCCC
Q 018592 232 FQCI----QGLPEGALRRIILTASGGAFRD 257 (353)
Q Consensus 232 fQ~L----~g~~~~~v~kIiLTASGGPFr~ 257 (353)
++-| .+..-.+|+.+.+ +=|+||+.
T Consensus 138 ~~~lke~l~~~~~Gdvk~v~~-~~~f~~~~ 166 (351)
T KOG2741|consen 138 YAKLKELLSSGVLGDVKSVEV-EFGFPFPE 166 (351)
T ss_pred HHHHHHHHhccccccceEEEE-ecCCCcch
Confidence 4433 3556679999999 67788863
No 306
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=87.59 E-value=5.8 Score=38.25 Aligned_cols=93 Identities=11% Similarity=0.161 Sum_probs=58.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
..+|.|.|+ |+||..++.+.+.. .+ +|+++... -++ .+.++++..+.+.-.++. -..+.+
T Consensus 188 g~~VlV~G~-g~vG~~a~q~ak~~--G~~~vi~~~~~--~~~-~~~~~~~Ga~~~i~~~~~-~~~~~~------------ 248 (369)
T cd08301 188 GSTVAIFGL-GAVGLAVAEGARIR--GASRIIGVDLN--PSK-FEQAKKFGVTEFVNPKDH-DKPVQE------------ 248 (369)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEcCC--HHH-HHHHHHcCCceEEccccc-chhHHH------------
Confidence 368999985 99999999999976 45 57666433 233 445677876655422210 011211
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcC
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g 192 (353)
.+.++... .+|+|++++.+-..+...+.+++.|
T Consensus 249 ----~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~~~~ 281 (369)
T cd08301 249 ----VIAEMTGG-GVDYSFECTGNIDAMISAFECVHDG 281 (369)
T ss_pred ----HHHHHhCC-CCCEEEECCCChHHHHHHHHHhhcC
Confidence 22333333 6899999976666777777777763
No 307
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.46 E-value=6.2 Score=36.04 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=33.6
Q ss_pred CeeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 018592 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (353)
Q Consensus 76 ~k~I~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkP 126 (353)
.|.+.|.|++ +.||..+..-+.+. .++|+.. .+| +.+.+++++..+
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~--G~~Vi~~--~r~-~~~~~~~~~~~~ 54 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQ--GATVIYT--YQN-DRMKKSLQKLVD 54 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEe--cCc-hHHHHHHHhhcc
Confidence 4789999999 78999999998875 6777754 345 455566665543
No 308
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=87.44 E-value=4.1 Score=38.74 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=57.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
.++|.|.|+ |++|..++.+.+.. .+ .|++.+ ++-+++ ++++++..+.+.-..+.. +.
T Consensus 173 g~~vlI~g~-g~vG~~a~q~a~~~--G~~~v~~~~--~~~~~~-~~~~~~ga~~~i~~~~~~---~~------------- 230 (351)
T cd08233 173 GDTALVLGA-GPIGLLTILALKAA--GASKIIVSE--PSEARR-ELAEELGATIVLDPTEVD---VV------------- 230 (351)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCEEEEEC--CCHHHH-HHHHHhCCCEEECCCccC---HH-------------
Confidence 367999985 99999999999986 56 565554 333443 455667766554321111 11
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
+.+.+......+|.|++.+.+...+...+.+++.+-++
T Consensus 231 ---~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~ 268 (351)
T cd08233 231 ---AEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTA 268 (351)
T ss_pred ---HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEE
Confidence 12233333335899999865555666677777665543
No 309
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=87.37 E-value=9.4 Score=34.28 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=33.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V 129 (353)
.+++.|.|++|+||..+..+.+.. .++|+..+ ++-+.+. .++++..+.+
T Consensus 140 ~~~vlv~g~~~~ig~~~~~~~~~~--g~~v~~~~--~~~~~~~-~~~~~g~~~~ 188 (323)
T cd05276 140 GETVLIHGGASGVGTAAIQLAKAL--GARVIATA--GSEEKLE-ACRALGADVA 188 (323)
T ss_pred CCEEEEEcCcChHHHHHHHHHHHc--CCEEEEEc--CCHHHHH-HHHHcCCCEE
Confidence 368999999999999999999987 45665543 3334333 3356665544
No 310
>PRK07201 short chain dehydrogenase; Provisional
Probab=87.26 E-value=5.4 Score=41.42 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=50.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh---CCCEEE-EeCccchHHHHHHhhcCCCCc
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVA-VRNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF---kPk~V~-i~de~~~~~l~~~l~~~~~~~ 151 (353)
.|++.|.|+||.||..+..-+.+. .++|+.++ +|-+.+.+...+. ..+... ..|-...+.+++.+.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~------ 440 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEA--GATVFLVA--RNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVK------ 440 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH------
Confidence 368999999999999999988775 57787764 4566665554443 333333 234444444444331
Q ss_pred EEEecHHHHHHHhcCCCCcEEEEec
Q 018592 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~~~D~Vv~AI 176 (353)
.+. .....+|++|+..
T Consensus 441 -------~~~--~~~g~id~li~~A 456 (657)
T PRK07201 441 -------DIL--AEHGHVDYLVNNA 456 (657)
T ss_pred -------HHH--HhcCCCCEEEECC
Confidence 111 1234688888873
No 311
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=87.19 E-value=2.7 Score=42.33 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=45.6
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC----CCEEEEeCccchHHHHHHhhc
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK----PQVVAVRNESLLDEIKEALAN 146 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk----Pk~V~i~de~~~~~l~~~l~~ 146 (353)
+.++|.|.||||+||.-.++.+-+. .|+|.|..=...-++-.+-.++++ .-.++..|-..++.+..++.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~g 78 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDG 78 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhC
Confidence 5678999999999999999988775 899999763332222223344443 133444555555666666554
No 312
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.13 E-value=3.5 Score=39.53 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=55.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags-Nv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
.++|.|+|+ |.||..+..+++.. ..+|++..... +-+++ +.++++..+++. ..++.. .
T Consensus 173 g~~vlI~G~-G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~-~~~~~~Ga~~v~-~~~~~~---~------------- 231 (355)
T cd08230 173 PRRALVLGA-GPIGLLAALLLRLR--GFEVYVLNRRDPPDPKA-DIVEELGATYVN-SSKTPV---A------------- 231 (355)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCeEEEEecCCCCHHHH-HHHHHcCCEEec-CCccch---h-------------
Confidence 357999996 99999999999886 45788765421 33443 367788887642 111100 0
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
+ .. ....+|+|+++..+-..+.-.+.+++.|=++
T Consensus 232 ---~-~~---~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~ 265 (355)
T cd08230 232 ---E-VK---LVGEFDLIIEATGVPPLAFEALPALAPNGVV 265 (355)
T ss_pred ---h-hh---hcCCCCEEEECcCCHHHHHHHHHHccCCcEE
Confidence 0 01 1236899999865444455555666555433
No 313
>PLN00198 anthocyanidin reductase; Provisional
Probab=87.08 E-value=0.83 Score=43.37 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=28.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
+|+|.|.|+||+||+...+-+.+. .++|+++.-
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~--g~~V~~~~r 41 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQK--GYAVNTTVR 41 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHC--CCEEEEEEC
Confidence 468999999999999999988875 578887763
No 314
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=87.03 E-value=7.1 Score=38.23 Aligned_cols=131 Identities=13% Similarity=0.151 Sum_probs=78.7
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCC---CceEEEEEeec-CCHHHHHHHHHhhCCCEEEEe--Cc--cch-HHHHHHh
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHE---DKFRVVALAAG-SNITLLADQVKRFKPQVVAVR--NE--SLL-DEIKEAL 144 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~p---d~F~VvaLaag-sNv~lL~~Q~~eFkPk~V~i~--de--~~~-~~l~~~l 144 (353)
..++||+||||.+ |++...++.... -+++|+++.++ .++.. .++++.-.+..+. ++ +.+ .++.+.+
T Consensus 87 ~~~~ri~vl~Sg~--g~nl~al~~~~~~~~~~~~i~~visn~~~~~~---lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l 161 (286)
T PRK13011 87 AARPKVLIMVSKF--DHCLNDLLYRWRIGELPMDIVGVVSNHPDLEP---LAAWHGIPFHHFPITPDTKPQQEAQVLDVV 161 (286)
T ss_pred ccCceEEEEEcCC--cccHHHHHHHHHcCCCCcEEEEEEECCccHHH---HHHHhCCCEEEeCCCcCchhhhHHHHHHHH
Confidence 3457899999986 888888886532 25899998764 35444 4888887776652 11 111 1233334
Q ss_pred hcCCCCcEEEecHHHHH--HHhcCCCCcEEEE----eccCccCcHHHHHHHHcCCc-----EeeecccceeecccchhH
Q 018592 145 ANVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGKD-----IALANKETLIAGGPFVLP 212 (353)
Q Consensus 145 ~~~~~~~~v~~G~~gl~--~~a~~~~~D~Vv~----AIvG~aGL~pT~~Ai~~gK~-----IaLANKESLV~aG~li~~ 212 (353)
...+.+.-|+.|---+. ++.+..+ .-++| -+--+-|..|...|+.+|.+ |-..++| +-+|++|.+
T Consensus 162 ~~~~~Dlivlagy~~il~~~~l~~~~-~~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~--~D~G~Ii~Q 237 (286)
T PRK13011 162 EESGAELVVLARYMQVLSPELCRKLA-GRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDD--LDEGPIIEQ 237 (286)
T ss_pred HHhCcCEEEEeChhhhCCHHHHhhcc-CCeEEeccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCC--CcCCCcEEE
Confidence 43344455666653221 1222221 12343 35667899999999999864 5556654 567888854
No 315
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=86.81 E-value=7.1 Score=38.13 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=80.5
Q ss_pred CCCCeeEEEEecCChHhHHHHHHHHhCCC---ceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCc----cch-HHHHHHh
Q 018592 73 WDGPKPISVLGSTGSIGTQTLDIVAEHED---KFRVVALAAGSNITLLADQVKRFKPQVVAVRNE----SLL-DEIKEAL 144 (353)
Q Consensus 73 ~~~~k~I~ILGSTGSIGtqTLdVI~~~pd---~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de----~~~-~~l~~~l 144 (353)
-..++||+||+|.+ |++.-.++..... +++|+++.+++ +.+...+++++-.+..+... +.+ .++.+.+
T Consensus 86 ~~~~~ri~vl~Sg~--gsnl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l 161 (286)
T PRK06027 86 SAERKRVVILVSKE--DHCLGDLLWRWRSGELPVEIAAVISNH--DDLRSLVERFGIPFHHVPVTKETKAEAEARLLELI 161 (286)
T ss_pred cccCcEEEEEEcCC--CCCHHHHHHHHHcCCCCcEEEEEEEcC--hhHHHHHHHhCCCEEEeccCccccchhHHHHHHHH
Confidence 34678999999988 9999999865433 68999998765 23444588888777664321 111 2333444
Q ss_pred hcCCCCcEEEecHHHHH--HHhcCCCCcEEEE----eccCccCcHHHHHHHHcCCc-----EeeecccceeecccchhH
Q 018592 145 ANVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGKD-----IALANKETLIAGGPFVLP 212 (353)
Q Consensus 145 ~~~~~~~~v~~G~~gl~--~~a~~~~~D~Vv~----AIvG~aGL~pT~~Ai~~gK~-----IaLANKESLV~aG~li~~ 212 (353)
...+.+.-|+.|---+. ++.+..+ .-++| -+.-+-|..|...|+.+|.+ |=..+.| +-.|++|.+
T Consensus 162 ~~~~~Dlivlagy~~il~~~~l~~~~-~~iiNiHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~~--~D~G~Ii~Q 237 (286)
T PRK06027 162 DEYQPDLVVLARYMQILSPDFVARFP-GRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTAD--LDEGPIIEQ 237 (286)
T ss_pred HHhCCCEEEEecchhhcCHHHHhhcc-CCceecCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcCC--CcCCCcEEE
Confidence 44344555666643222 1222221 12333 24457788999999999874 4445544 467888844
No 316
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=86.74 E-value=8 Score=35.37 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=56.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCc-cchHHHHHHhhcCCCCcEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEI 153 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de-~~~~~l~~~l~~~~~~~~v 153 (353)
..+|.|.| +|++|..++++.+.. .++ |++.+ + +-+.+. .++++..+.+.-.++ +...
T Consensus 130 ~~~vlI~g-~g~vg~~~~~la~~~--g~~~v~~~~-~-~~~~~~-~~~~~g~~~~~~~~~~~~~~--------------- 188 (312)
T cd08269 130 GKTVAVIG-AGFIGLLFLQLAAAA--GARRVIAID-R-RPARLA-LARELGATEVVTDDSEAIVE--------------- 188 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCcEEEEEC-C-CHHHHH-HHHHhCCceEecCCCcCHHH---------------
Confidence 35799997 689999999999987 566 65543 2 333333 566676654442211 1112
Q ss_pred EecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 154 ~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.++.....+|.+++.+.+-..+...+..++.+-++.
T Consensus 189 -----~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~ 226 (312)
T cd08269 189 -----RVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLV 226 (312)
T ss_pred -----HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 22333333468999998655455666666666554433
No 317
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=86.73 E-value=11 Score=35.44 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=56.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.| +|++|..++.+.+.. .++|++.+.. +.-.+.++++..+.+.-..+.. +.
T Consensus 160 g~~vLI~g-~g~vG~~a~~lA~~~--g~~v~~~~~s---~~~~~~~~~~g~~~v~~~~~~~---~~-------------- 216 (337)
T cd08261 160 GDTVLVVG-AGPIGLGVIQVAKAR--GARVIVVDID---DERLEFARELGADDTINVGDED---VA-------------- 216 (337)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCeEEEECCC---HHHHHHHHHhCCCEEecCcccC---HH--------------
Confidence 35789997 589999999999986 5788877543 2233455677766654322111 11
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
+.+.+......+|++++.+.|-..+...+..++.+-+
T Consensus 217 --~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~ 253 (337)
T cd08261 217 --ARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGR 253 (337)
T ss_pred --HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCE
Confidence 1223333333578888886554556666666655433
No 318
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=86.70 E-value=1.3 Score=40.70 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=28.3
Q ss_pred EEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 018592 81 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (353)
Q Consensus 81 ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~ 121 (353)
|-||||++|...|+-+-+.++..+|.+|.=.+|.+...+.+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl 41 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERL 41 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhh
Confidence 57999999999998777766533999998777764443333
No 319
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.60 E-value=5 Score=38.87 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=58.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.+|.|.|+ |.||..+..+.+.. .. +|++.. ++-+++ +.++++..+.+.-.++. .+.
T Consensus 193 ~~VlV~G~-G~vG~~a~~lak~~--G~~~Vi~~~--~~~~r~-~~a~~~Ga~~~i~~~~~---~~~-------------- 249 (371)
T cd08281 193 QSVAVVGL-GGVGLSALLGAVAA--GASQVVAVD--LNEDKL-ALARELGATATVNAGDP---NAV-------------- 249 (371)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCcEEEEc--CCHHHH-HHHHHcCCceEeCCCch---hHH--------------
Confidence 57999995 99999999999876 45 466654 343443 35677877665432211 111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
+.+.++... .+|+|+++..+-..+.-.+.+++.|=++.
T Consensus 250 --~~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l~~~G~iv 287 (371)
T cd08281 250 --EQVRELTGG-GVDYAFEMAGSVPALETAYEITRRGGTTV 287 (371)
T ss_pred --HHHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcCCEEE
Confidence 112222222 58999998755567777777777765543
No 320
>PRK07791 short chain dehydrogenase; Provisional
Probab=86.57 E-value=7.2 Score=36.55 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=26.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
.|.+.|.|+++.||..+..-+.+. ..+|+.+.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~--G~~vii~~ 37 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAE--GARVVVND 37 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEee
Confidence 368999999999999999888875 46676654
No 321
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.54 E-value=7.6 Score=35.57 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=32.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk 125 (353)
|+|+|.|. |.+|..+..-+.++ ..+|++ ...|.+.+.+...+|.
T Consensus 29 k~v~I~G~-G~vG~~~A~~L~~~--G~~Vvv--~D~~~~~~~~~~~~~g 72 (200)
T cd01075 29 KTVAVQGL-GKVGYKLAEHLLEE--GAKLIV--ADINEEAVARAAELFG 72 (200)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCEEEE--EcCCHHHHHHHHHHcC
Confidence 67999999 79999999988876 578883 4566666655555443
No 322
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=86.49 E-value=9.8 Score=35.64 Aligned_cols=100 Identities=9% Similarity=0.090 Sum_probs=58.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCC-HHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEE
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN-ITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI 153 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsN-v~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v 153 (353)
..++|.|.|++|++|..++.+.+.. ..+|++.+.... .+.-.+.++++..+.+.-.++.....+.
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------------ 211 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLAT------------ 211 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHH------------
Confidence 3468999999999999999999987 577887765332 1122344466777665533221000111
Q ss_pred EecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 154 ~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
+.+...... .+|.|++...| ..+...+..++.+-+
T Consensus 212 ----~~i~~~~~~-~~d~vld~~g~-~~~~~~~~~l~~~G~ 246 (341)
T cd08290 212 ----ELLKSAPGG-RPKLALNCVGG-KSATELARLLSPGGT 246 (341)
T ss_pred ----HHHHHHcCC-CceEEEECcCc-HhHHHHHHHhCCCCE
Confidence 112222222 58899987555 445556666654433
No 323
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.48 E-value=1 Score=41.20 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=27.3
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (353)
+|.|.|+||+||+...+-+.+. .++|+++.-.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA--GHDVRGLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCC
Confidence 4999999999999999988876 6888888743
No 324
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=86.26 E-value=10 Score=35.58 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=57.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|+ |++|..++++.+.... -.|+++. ++-++ .+.++++..+.+.-..+.. +.+
T Consensus 168 ~~~VlI~g~-g~vg~~~iqlak~~g~-~~v~~~~--~~~~~-~~~~~~~g~~~vi~~~~~~---~~~------------- 226 (347)
T cd05278 168 GSTVAVIGA-GPVGLCAVAGARLLGA-ARIIAVD--SNPER-LDLAKEAGATDIINPKNGD---IVE------------- 226 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCC-CEEEEEe--CCHHH-HHHHHHhCCcEEEcCCcch---HHH-------------
Confidence 357888765 9999999999997631 1455652 33333 3455666644443222111 111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.+......+|++++++.|-..+...+.+++.+-++.
T Consensus 227 ---~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 227 ---QILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIA 264 (347)
T ss_pred ---HHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEE
Confidence 12222233468999998666467788888887766554
No 325
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=86.25 E-value=6.8 Score=38.28 Aligned_cols=132 Identities=16% Similarity=0.165 Sum_probs=80.0
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCC---ceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCcc-----chHHHHHHhh
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHED---KFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-----LLDEIKEALA 145 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~pd---~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~-----~~~~l~~~l~ 145 (353)
+.++||+||.|.+ |++.-+++.+..+ +.+|+++.+++ +.+...+++++-.+..+.... .-.++-+.+.
T Consensus 82 ~~~~ki~vl~Sg~--g~nl~~l~~~~~~g~l~~~i~~visn~--~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~ 157 (280)
T TIGR00655 82 DKLKRVAILVSKE--DHCLGDLLWRWYSGELDAEIALVISNH--EDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLK 157 (280)
T ss_pred CCCcEEEEEEcCC--ChhHHHHHHHHHcCCCCcEEEEEEEcC--hhHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHH
Confidence 4578999999988 9999999987543 46888887654 344556888887777664311 1122333333
Q ss_pred cCCCCcEEEecHHHHH--HHhcCCCCcEEEE----eccCccCcHHHHHHHHcCCc-----EeeecccceeecccchhH
Q 018592 146 NVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGKD-----IALANKETLIAGGPFVLP 212 (353)
Q Consensus 146 ~~~~~~~v~~G~~gl~--~~a~~~~~D~Vv~----AIvG~aGL~pT~~Ai~~gK~-----IaLANKESLV~aG~li~~ 212 (353)
..+.+.-++.|---+. ++.+..+. -++| -+.-+-|..|...|+++|.+ +=..|.| +-.|++|.+
T Consensus 158 ~~~~Dlivlagym~il~~~~l~~~~~-~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~--lD~GpII~Q 232 (280)
T TIGR00655 158 QYQVDLVVLAKYMQILSPDFVKRYPN-KIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEE--LDEGPIIEQ 232 (280)
T ss_pred HhCCCEEEEeCchhhCCHHHHhhccC-CEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCC--CcCCCeEEE
Confidence 3333444555542211 11222211 2333 23557899999999999964 4556655 467888854
No 326
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=86.25 E-value=8.3 Score=37.54 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=62.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCcc-chHHHHHHhhcCCCCc----
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKP---- 151 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~-~~~~l~~~l~~~~~~~---- 151 (353)
.+|.|.|++|+||..++.+.+.. .+++++.+ ++-+++ ++++++..+.+.-.++. .+..... + +.+...
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~--G~~vv~~~--~s~~~~-~~~~~~G~~~~i~~~~~~~~~~~~~-~-~~~~~~~~~~ 267 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA--GANPVAVV--SSEEKA-EYCRALGAEGVINRRDFDHWGVLPD-V-NSEAYTAWTK 267 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCeEEEEe--CCHHHH-HHHHHcCCCEEEccccccccccccc-c-cchhhhhhhh
Confidence 58999999999999999999887 56777654 333443 46677887665533211 0000000 0 000000
Q ss_pred EEEecHHHHHHHhcCC-CCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 152 EILAGEQGVIEAARHP-DAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~-~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
....-.+.+.++.... .+|+|++.. |...+...+..++.+=+
T Consensus 268 ~~~~~~~~v~~l~~~~~g~d~vid~~-g~~~~~~~~~~l~~~G~ 310 (393)
T cd08246 268 EARRFGKAIWDILGGREDPDIVFEHP-GRATFPTSVFVCDRGGM 310 (393)
T ss_pred ccchHHHHHHHHhCCCCCCeEEEECC-chHhHHHHHHHhccCCE
Confidence 0000123455555444 699999984 44667777776665443
No 327
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=86.22 E-value=4.5 Score=39.75 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=86.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhC-CCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEH-EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~-pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
+||+|+|. |.||+...+-+.+- .+.|+++++ ..++.++-.+.+.. ++ ++
T Consensus 3 ~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V-~~~~~~~~~~~~~~--~~-------------------------~~- 52 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLADAAQPCQLAAL-TRNAADLPPALAGR--VA-------------------------LL- 52 (267)
T ss_pred eEEEEECc-cHHHHHHHHHHhcCCCCceEEEEE-ecCCHHHHHHhhcc--Cc-------------------------cc-
Confidence 58999997 99999999877753 456999998 55555444333322 21 11
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeee------cccceeecccchhHHhhhcCCeEeecCCchh
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA------NKETLIAGGPFVLPLAHKHNIKILPADSEHS 229 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLA------NKESLV~aG~li~~~a~~~~~~IlPVDSEHs 229 (353)
+.+.+++. .++|+||.+-+=.+=-+-....|++|+++.+. +++.. .-+.+.|++++.+++-- .-
T Consensus 53 --~~l~~ll~-~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~----~~l~~~A~~~g~~i~ip---SG 122 (267)
T PRK13301 53 --DGLPGLLA-WRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALR----ARLIAAAEAGGARIRVP---AG 122 (267)
T ss_pred --CCHHHHhh-cCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHH----HHHHHHHHhCCCEEEEe---Ch
Confidence 12344432 35888888754444444456677788887543 22211 12456778888777642 35
Q ss_pred HHH--HhhcCCCCCCcceEEEEecCCc--CCCCC
Q 018592 230 AIF--QCIQGLPEGALRRIILTASGGA--FRDWP 259 (353)
Q Consensus 230 AIf--Q~L~g~~~~~v~kIiLTASGGP--Fr~~~ 259 (353)
||+ +.|+--....++++.+|.--.| |++-+
T Consensus 123 AigGlD~l~aa~~~~~~~v~~~t~K~P~sl~g~~ 156 (267)
T PRK13301 123 AIAGLDYLQAVAGRDDAEVVYESRKPVAAWRAEL 156 (267)
T ss_pred HHHhHHHHHHhhccCceEEEEEEecChhHhccCh
Confidence 653 5555444456788888876666 44444
No 328
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=86.00 E-value=7.9 Score=38.79 Aligned_cols=135 Identities=14% Similarity=0.214 Sum_probs=72.1
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccch--HHHHHHhhcCCCCc-
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLL--DEIKEALANVEEKP- 151 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~--~~l~~~l~~~~~~~- 151 (353)
..++|+|+|++|.+|.+.-..+++. .++|.+... +..+.+.+.+. +.++|+++-+... +.+++ +.....++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~-~~~~~~~~~~~--~aDlVilavP~~~~~~~~~~-l~~l~~~~i 170 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQ-DDWDRAEDILA--DAGMVIVSVPIHLTEEVIAR-LPPLPEDCI 170 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCC-CcchhHHHHHh--cCCEEEEeCcHHHHHHHHHH-HhCCCCCcE
Confidence 3478999999999999999999886 366666542 22233333333 4688887654332 22333 22222121
Q ss_pred EEEecH--HH-HHHHhcCCCCcEE-EEeccCccCcHHHHHHHHcCCcEeeecccceeecc------cchhHHhhhcCCeE
Q 018592 152 EILAGE--QG-VIEAARHPDAVTV-VTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG------PFVLPLAHKHNIKI 221 (353)
Q Consensus 152 ~v~~G~--~g-l~~~a~~~~~D~V-v~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG------~li~~~a~~~~~~I 221 (353)
-+-.|. .. +.++.+.....+| .-=+.|. .. =.++++-.+++.| ..+.++.+..|.++
T Consensus 171 v~Dv~SvK~~~~~~~~~~~~~~fvg~HPm~G~-----~~--------~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v 237 (374)
T PRK11199 171 LVDLTSVKNAPLQAMLAAHSGPVLGLHPMFGP-----DV--------GSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARL 237 (374)
T ss_pred EEECCCccHHHHHHHHHhCCCCEEeeCCCCCC-----CC--------cccCCCEEEEcCCCCchHHHHHHHHHHHCCCEE
Confidence 111122 22 3334433222222 1112221 00 0234444555555 35678888899999
Q ss_pred eecCCch
Q 018592 222 LPADSEH 228 (353)
Q Consensus 222 lPVDSEH 228 (353)
+.+|.|.
T Consensus 238 ~~~~~~~ 244 (374)
T PRK11199 238 HRISAVE 244 (374)
T ss_pred EECCHHH
Confidence 9999864
No 329
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.86 E-value=3.2 Score=42.78 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=49.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCH-HHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI-TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv-~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
+++.+-|+||++|.-.+.=.-..++ .+|.+|.=.+|- ..+....+.|. .+..+++... ..++++.
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~-~kv~cLVRA~s~E~a~~RL~~~~~----------~~~~~~e~~~---~ri~vv~ 66 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD-AKVICLVRAQSDEAALARLEKTFD----------LYRHWDELSA---DRVEVVA 66 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC-CcEEEEEecCCHHHHHHHHHHHhh----------hhhhhhhhhc---ceEEEEe
Confidence 4688999999999766554444445 999999977772 23333334443 1223333221 2466666
Q ss_pred cHHH----------HHHHhcCCCCcEEEEe
Q 018592 156 GEQG----------VIEAARHPDAVTVVTG 175 (353)
Q Consensus 156 G~~g----------l~~~a~~~~~D~Vv~A 175 (353)
|+-+ ..++++ .+|+|+-.
T Consensus 67 gDl~e~~lGL~~~~~~~La~--~vD~I~H~ 94 (382)
T COG3320 67 GDLAEPDLGLSERTWQELAE--NVDLIIHN 94 (382)
T ss_pred cccccccCCCCHHHHHHHhh--hcceEEec
Confidence 6643 344553 48888864
No 330
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=85.86 E-value=16 Score=34.25 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=60.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCc-cchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de-~~~~~l~~~l~~~~~~~~v~ 154 (353)
..+|.|.|++|++|..++++.+.. .++|++++.. -++. +.++++..+.+.-... +...++
T Consensus 166 ~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~--~~~~-~~~~~~g~~~v~~~~~~~~~~~~-------------- 226 (341)
T cd08297 166 GDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVG--DEKL-ELAKELGADAFVDFKKSDDVEAV-------------- 226 (341)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCC--HHHH-HHHHHcCCcEEEcCCCccHHHHH--------------
Confidence 368999999999999999999987 4677776533 3443 3446777665543221 111222
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+......+|.++++..+-..+...+.++..+=++.
T Consensus 227 ------~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v 262 (341)
T cd08297 227 ------KELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLV 262 (341)
T ss_pred ------HHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEE
Confidence 222222357888886666667777777776554443
No 331
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=85.83 E-value=6.2 Score=36.72 Aligned_cols=89 Identities=18% Similarity=0.273 Sum_probs=59.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|+|++|++|..++.+.+.. ..+|++++ + .+.+++|..+.+.-.+ + .
T Consensus 163 g~~vlI~g~~g~vg~~~~~~a~~~--G~~v~~~~--~-----~~~~~~~g~~~~~~~~-~----~--------------- 213 (325)
T cd08264 163 GETVVVFGASGNTGIFAVQLAKMM--GAEVIAVS--R-----KDWLKEFGADEVVDYD-E----V--------------- 213 (325)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCeEEEEe--H-----HHHHHHhCCCeeecch-H----H---------------
Confidence 368999999999999999999987 45677765 1 1445667665443211 0 1
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEee
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaL 197 (353)
.+.+.++. ..+|+|+++..+ ..+...+.+++.+-++..
T Consensus 214 -~~~l~~~~--~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~ 251 (325)
T cd08264 214 -EEKVKEIT--KMADVVINSLGS-SFWDLSLSVLGRGGRLVT 251 (325)
T ss_pred -HHHHHHHh--CCCCEEEECCCH-HHHHHHHHhhccCCEEEE
Confidence 12233333 468999998655 677888888877666554
No 332
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=85.83 E-value=6 Score=40.82 Aligned_cols=81 Identities=19% Similarity=0.179 Sum_probs=57.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEee-----------cCCHHHHHHHHHhhCCCEEEEeCccch-HHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAA-----------GSNITLLADQVKRFKPQVVAVRNESLL-DEIKE 142 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd-~F~VvaLaa-----------gsNv~lL~~Q~~eFkPk~V~i~de~~~-~~l~~ 142 (353)
.+++.|+|+ |+-|.+..+-++++|+ .|+++|..- -.|.+.|.+.+++.+.+.|.++-+... +++++
T Consensus 143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~e 221 (463)
T PRK10124 143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVKK 221 (463)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHHH
Confidence 467999984 7889999999988875 799999763 357788999999999999999865432 23333
Q ss_pred ---HhhcCCCCcEEEecH
Q 018592 143 ---ALANVEEKPEILAGE 157 (353)
Q Consensus 143 ---~l~~~~~~~~v~~G~ 157 (353)
.+...+.++.++.+-
T Consensus 222 ll~~~~~~~v~V~ivP~l 239 (463)
T PRK10124 222 LVRQLADTTCSVLLIPDV 239 (463)
T ss_pred HHHHHHHcCCeEEEecch
Confidence 333333344444443
No 333
>PLN02780 ketoreductase/ oxidoreductase
Probab=85.81 E-value=5.9 Score=38.30 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=33.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
+.+.|.|+||-||.....-+.+. .++|+.+ .+|-+.|.+.+++.
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~--G~~Vil~--~R~~~~l~~~~~~l 97 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARK--GLNLVLV--ARNPDKLKDVSDSI 97 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCCEEEE--ECCHHHHHHHHHHH
Confidence 67999999999999999888875 5677664 35777776655543
No 334
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=85.78 E-value=1 Score=41.62 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=27.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
++|.|.|+||.||....+-+.+. .++|+++.-
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEe
Confidence 36999999999999999998876 478888764
No 335
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=85.73 E-value=10 Score=35.80 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=59.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
.++|.|.| .|++|..++.+.+... . +|++. .++-+.+ +.++++..+.+.-.++.. +.
T Consensus 164 g~~vlV~~-~g~vg~~~~~la~~~G--~~~v~~~--~~~~~~~-~~~~~lg~~~~~~~~~~~---~~------------- 221 (341)
T PRK05396 164 GEDVLITG-AGPIGIMAAAVAKHVG--ARHVVIT--DVNEYRL-ELARKMGATRAVNVAKED---LR------------- 221 (341)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcC--CCEEEEE--cCCHHHH-HHHHHhCCcEEecCcccc---HH-------------
Confidence 35788876 5999999999998763 4 35444 3343443 456677776654322211 11
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEee
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaL 197 (353)
+.+.++.....+|.|+++..+-..+...+.+++.+-++.+
T Consensus 222 ---~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~ 261 (341)
T PRK05396 222 ---DVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAM 261 (341)
T ss_pred ---HHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 1122233334689999976666677888888877665543
No 336
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=85.70 E-value=8.8 Score=35.58 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=56.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHh-hCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~e-FkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.+|.|.|++|++|..+..+.++. .++|++++ ++-+.+. .+++ +..+.+.-.++. .+.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~--~~~~~~~-~~~~~~g~~~~~~~~~~---~~~-------------- 204 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLL--GARVVGIA--GSDEKCR-WLVEELGFDAAINYKTP---DLA-------------- 204 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHc--CCEEEEEe--CCHHHHH-HHHhhcCCceEEecCCh---hHH--------------
Confidence 68999999999999999999986 46777765 3333332 3333 555443322111 111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
+.+.+... ..+|++++...| ..+...+..++.+-++.
T Consensus 205 --~~v~~~~~-~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v 241 (329)
T cd05288 205 --EALKEAAP-DGIDVYFDNVGG-EILDAALTLLNKGGRIA 241 (329)
T ss_pred --HHHHHhcc-CCceEEEEcchH-HHHHHHHHhcCCCceEE
Confidence 12223332 358899886544 56666677776554443
No 337
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=85.65 E-value=6.1 Score=35.05 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=29.2
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
|.|.|+||.||..+..-+.+. .++|+.+ +.++.+.+.+..+
T Consensus 1 vlItGas~giG~~~a~~l~~~--G~~v~~~-~~~~~~~~~~~~~ 41 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAAD--GFEICVH-YHSGRSDAESVVS 41 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHC--CCEEEEE-eCCCHHHHHHHHH
Confidence 579999999999999999876 5676544 4555554444433
No 338
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=85.61 E-value=8.7 Score=36.04 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=58.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
..+|.|.| .|++|..++.+.+.. ..+ |++.+.. -++. +.++++..+.+.-.++.. +
T Consensus 166 g~~VlV~g-~g~vg~~~~~la~~~--g~~~v~~~~~s--~~~~-~~~~~~g~~~~~~~~~~~---~-------------- 222 (343)
T cd08235 166 GDTVLVIG-AGPIGLLHAMLAKAS--GARKVIVSDLN--EFRL-EFAKKLGADYTIDAAEED---L-------------- 222 (343)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCcEEEEECCC--HHHH-HHHHHhCCcEEecCCccC---H--------------
Confidence 46899997 589999999988876 355 5554332 2222 233567766544322211 1
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.+.++.....+|+|++.+.|-..+...+.+++.+-++.
T Consensus 223 --~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v 262 (343)
T cd08235 223 --VEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRIL 262 (343)
T ss_pred --HHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 1122333333458999998776667777788887665543
No 339
>PRK06125 short chain dehydrogenase; Provisional
Probab=85.54 E-value=4.8 Score=36.48 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=34.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|++.|.|+||.||..+...+.+. .++|+++. +|-+.+.+...+.
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~l 51 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAE--GCHLHLVA--RDADALEALAADL 51 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHH
Confidence 378999999999999999999875 56777764 5566666555443
No 340
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=85.08 E-value=11 Score=34.98 Aligned_cols=92 Identities=9% Similarity=0.074 Sum_probs=54.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..++.|.|++|.+|..++.+.+.. ..+|++.+ ++-+++ +.++++..+.+.-.++...
T Consensus 141 g~~vlI~g~~g~ig~~~~~lak~~--G~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~------------------ 197 (327)
T PRK10754 141 DEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTV--GSAQKA-QRAKKAGAWQVINYREENI------------------ 197 (327)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHc--CCEEEEEe--CCHHHH-HHHHHCCCCEEEcCCCCcH------------------
Confidence 368999999999999999999987 45677654 233333 3346676655543222111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcC
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g 192 (353)
.+.+.++.....+|++++.+.| ..+...+..++.+
T Consensus 198 -~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~ 232 (327)
T PRK10754 198 -VERVKEITGGKKVRVVYDSVGK-DTWEASLDCLQRR 232 (327)
T ss_pred -HHHHHHHcCCCCeEEEEECCcH-HHHHHHHHHhccC
Confidence 1122333333357888887554 4455555555443
No 341
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=85.02 E-value=8.7 Score=34.27 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=27.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
.|++.|.|+||.||....+-+.+. .++|+++.-
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~--G~~v~~~~~ 40 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEA--GAKVIGFDQ 40 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEec
Confidence 368999999999999999988764 578887753
No 342
>PRK07856 short chain dehydrogenase; Provisional
Probab=84.98 E-value=7.4 Score=35.09 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=26.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
.|++.|.|+||.||..+.+-+.+. .++|+.+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~--g~~v~~~~ 37 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAA--GATVVVCG 37 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 478999999999999999998875 56776653
No 343
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.94 E-value=8 Score=35.25 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=25.2
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEEE
Q 018592 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVAL 108 (353)
Q Consensus 76 ~k~I~ILGSTG--SIGtqTLdVI~~~pd~F~VvaL 108 (353)
.|++.|.|+|| +||..+..-+.++ .++|+..
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~--G~~vi~~ 38 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEA--GADIFFT 38 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHC--CCeEEEE
Confidence 36899999995 8999999988876 4667664
No 344
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=84.88 E-value=10 Score=37.27 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=65.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccch-HHHHHHhhc-CCCC-cE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLL-DEIKEALAN-VEEK-PE 152 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~-~~l~~~l~~-~~~~-~~ 152 (353)
..++.|.|++|.||..++.+.+.+ ..+++.++ ++-++ .+.++++..+.+.-.++... ..+.+.... .... .+
T Consensus 190 g~~vlV~Ga~g~vG~~ai~~ak~~--G~~vi~~~--~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (398)
T TIGR01751 190 GDNVLIWGAAGGLGSYATQLARAG--GGNPVAVV--SSPEK-AEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKS 264 (398)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHc--CCeEEEEc--CCHHH-HHHHHHcCCCEEecCCCcchhhccccccccccchhhhc
Confidence 368999999999999999999977 46677665 33344 35667788777653322110 001100000 0000 00
Q ss_pred EEecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 153 ILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 153 v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
...-.+.+.++.....+|+|++.. |...+..++.+++.+=++
T Consensus 265 ~~~~~~~~~~~~~~~g~d~vld~~-g~~~~~~~~~~l~~~G~~ 306 (398)
T TIGR01751 265 FKRFGKRIRELTGGEDPDIVFEHP-GRATFPTSVFVCRRGGMV 306 (398)
T ss_pred chhHHHHHHHHcCCCCceEEEECC-cHHHHHHHHHhhccCCEE
Confidence 011123445554445699999985 446677778877765443
No 345
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.76 E-value=11 Score=34.07 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=25.9
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEEEe
Q 018592 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTG--SIGtqTLdVI~~~pd~F~VvaLa 109 (353)
.|++.|.|+|| .||.+...-+.+. .++|+.+.
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~--G~~vi~~~ 38 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAK--GIDIFFTY 38 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHc--CCcEEEEc
Confidence 36799999996 6999999888876 57887764
No 346
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=84.72 E-value=8.4 Score=38.86 Aligned_cols=61 Identities=15% Similarity=0.287 Sum_probs=48.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEeecC--------------CHHHHHHHHHhhCCCEEEEeCccc
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAGS--------------NITLLADQVKRFKPQVVAVRNESL 136 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd-~F~VvaLaags--------------Nv~lL~~Q~~eFkPk~V~i~de~~ 136 (353)
..+++.|+|+ |.-|.+.++-++++|+ .|+++|..-.. +.+.+.+.+++.+.+.|.++.+..
T Consensus 124 ~~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~ 199 (445)
T TIGR03025 124 NLRRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLS 199 (445)
T ss_pred CCCcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcc
Confidence 3478999996 7788899988887765 69999975322 567899999999999999876543
No 347
>PRK08303 short chain dehydrogenase; Provisional
Probab=84.69 E-value=11 Score=36.24 Aligned_cols=32 Identities=19% Similarity=0.059 Sum_probs=26.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
.|.+.|.|+|+.||..+..-+.+. .++|+.+.
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~--G~~Vv~~~ 39 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAA--GATVYVTG 39 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 378999999999999999998874 57777653
No 348
>PLN02686 cinnamoyl-CoA reductase
Probab=84.64 E-value=5.4 Score=39.19 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
.+|+|.|.|+||+||....+-+.+. .++|++++
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~--G~~V~~~~ 84 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRH--GYSVRIAV 84 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEe
Confidence 3578999999999999999988765 68888765
No 349
>PRK08324 short chain dehydrogenase; Validated
Probab=84.62 E-value=7.8 Score=41.54 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=34.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk 125 (353)
|++.|.|+||.||..+...+.+. .++|+.+. +|-+.+.+...++.
T Consensus 423 k~vLVTGasggIG~~la~~L~~~--Ga~Vvl~~--r~~~~~~~~~~~l~ 467 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAE--GACVVLAD--LDEEAAEAAAAELG 467 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--cCEEEEEe--CCHHHHHHHHHHHh
Confidence 68999999999999999999876 46777654 55566665555554
No 350
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.59 E-value=11 Score=35.70 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=55.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
..+|.|.| .|++|..++.+.+... .+ |++.+. +-++ .++++++..+.+.-.++....++.+
T Consensus 163 g~~vlI~g-~g~vG~~a~~lak~~G--~~~v~~~~~--~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~------------ 224 (343)
T cd05285 163 GDTVLVFG-AGPIGLLTAAVAKAFG--ATKVVVTDI--DPSR-LEFAKELGATHTVNVRTEDTPESAE------------ 224 (343)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcC--CcEEEEECC--CHHH-HHHHHHcCCcEEeccccccchhHHH------------
Confidence 35788876 5899999999999864 44 444432 2222 3455666666554332221111111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
.+.+......+|+|++...+-..+...+..+..+-++
T Consensus 225 ----~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~ 261 (343)
T cd05285 225 ----KIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTV 261 (343)
T ss_pred ----HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 1222223335899999855444666677777665443
No 351
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=84.45 E-value=2.7 Score=40.12 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=29.3
Q ss_pred EEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHH
Q 018592 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT 115 (353)
Q Consensus 80 ~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~ 115 (353)
.|.|+||++|...++-+-++.+.++|.++.-..+..
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~ 36 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPK 36 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccc
Confidence 378999999999999999887778888877554433
No 352
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=84.28 E-value=12 Score=35.64 Aligned_cols=93 Identities=11% Similarity=0.138 Sum_probs=56.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCcc-chHHHHHHhhcCCCCcEEE
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~-~~~~l~~~l~~~~~~~~v~ 154 (353)
.+|.| +++|++|..++.+.+..- .. +++. .++-+++ +.++++..+.+.-.++. ...+
T Consensus 176 ~~vlI-~g~g~vG~~~~~~a~~~G--~~~v~~~--~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~--------------- 234 (350)
T cd08256 176 DVVVL-AGAGPLGLGMIGAARLKN--PKKLIVL--DLKDERL-ALARKFGADVVLNPPEVDVVEK--------------- 234 (350)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcC--CcEEEEE--cCCHHHH-HHHHHcCCcEEecCCCcCHHHH---------------
Confidence 46777 667999999999998863 33 3332 3444544 46677776654322211 1122
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
+.++.....+|++++.+.|-..+...+.+++.+-++
T Consensus 235 -----~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~ 270 (350)
T cd08256 235 -----IKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRF 270 (350)
T ss_pred -----HHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence 222333335899999876556677788888776543
No 353
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=84.20 E-value=14 Score=34.67 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=58.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.| +|++|..++++.+.. .++|+.....++-+++ +.++++..+.+ -..+..+ .
T Consensus 165 g~~vlI~g-~g~~g~~~~~la~~~--G~~v~~~~~~~~~~~~-~~~~~~g~~~~-~~~~~~~---~-------------- 222 (306)
T cd08258 165 GDTVVVFG-PGPIGLLAAQVAKLQ--GATVVVVGTEKDEVRL-DVAKELGADAV-NGGEEDL---A-------------- 222 (306)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCEEEEECCCCCHHHH-HHHHHhCCccc-CCCcCCH---H--------------
Confidence 45788855 799999999999987 4677665445554444 45566665433 1111111 1
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
+.+.++....++|.+++.+.+-..+...+..++.+-++.
T Consensus 223 --~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v 261 (306)
T cd08258 223 --ELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIV 261 (306)
T ss_pred --HHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 112222333458999998655566777777776655544
No 354
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=83.99 E-value=11 Score=36.55 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=58.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.++.|.| +|+||..++.+.+.. ..+|++++ ++-+++.+..+++..+.+....+ ...+
T Consensus 182 ~~vlV~G-~G~vG~~av~~Ak~~--G~~vi~~~--~~~~~~~~~~~~~Ga~~~i~~~~--~~~~---------------- 238 (357)
T PLN02514 182 LRGGILG-LGGVGHMGVKIAKAM--GHHVTVIS--SSDKKREEALEHLGADDYLVSSD--AAEM---------------- 238 (357)
T ss_pred CeEEEEc-ccHHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHhcCCcEEecCCC--hHHH----------------
Confidence 5788997 599999999999987 46677655 34455555667787765433211 1111
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.. ..+|+|++++.+...+...+.+++.|-++.
T Consensus 239 ----~~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~iv 272 (357)
T PLN02514 239 ----QEAA--DSLDYIIDTVPVFHPLEPYLSLLKLDGKLI 272 (357)
T ss_pred ----HHhc--CCCcEEEECCCchHHHHHHHHHhccCCEEE
Confidence 1111 258999998655567777777777665543
No 355
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=83.99 E-value=7.1 Score=35.78 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=44.6
Q ss_pred CCCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC--------------CHHHHHHHHHhhCCCEEEEeCcc
Q 018592 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--------------NITLLADQVKRFKPQVVAVRNES 135 (353)
Q Consensus 71 ~~~~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags--------------Nv~lL~~Q~~eFkPk~V~i~de~ 135 (353)
-.|+..++|+|+|+ |.+|....+........|+++|+.... ..+.+.+.+++.+++.|.++-+.
T Consensus 79 l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~ 156 (213)
T PRK05472 79 LGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPA 156 (213)
T ss_pred hCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCc
Confidence 34556678999995 889998887644323469999985321 24567777777788888877554
No 356
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=83.97 E-value=1.4 Score=41.10 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=25.5
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (353)
|.|.|+||+||+...+-+.+. .++++++.-+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~--g~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDK--GITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhC--CCceEEEecC
Confidence 789999999999999998876 5667776533
No 357
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.90 E-value=13 Score=33.98 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=34.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCC-CceEEEEEeecCCHHHHHHHHHhhC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVKRFK 125 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~p-d~F~VvaLaagsNv~lL~~Q~~eFk 125 (353)
.+||+|+| +|.+|+....-+.++. ..++.+.+..++|-+.+.+..+++.
T Consensus 4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 53 (245)
T PRK07634 4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYN 53 (245)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcC
Confidence 35799999 6999998888776653 3455333445567788877777775
No 358
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=83.37 E-value=14 Score=35.74 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=55.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
++|.|.|+ |++|..++.+.+... . .|++.. ++-+++ +.++++..+.+.-.+.... .
T Consensus 188 ~~vlI~g~-g~vG~~~~~la~~~G--~~~v~~~~--~~~~k~-~~~~~~g~~~~i~~~~~~~---~-------------- 244 (365)
T cd08278 188 SSIAVFGA-GAVGLAAVMAAKIAG--CTTIIAVD--IVDSRL-ELAKELGATHVINPKEEDL---V-------------- 244 (365)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcC--CCeEEEEe--CCHHHH-HHHHHcCCcEEecCCCcCH---H--------------
Confidence 68999975 999999999999873 4 344433 233443 3567777766543322111 1
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
+.+.++. ...+|.|++++.+-..+...+..++.+-++
T Consensus 245 --~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~ 281 (365)
T cd08278 245 --AAIREIT-GGGVDYALDTTGVPAVIEQAVDALAPRGTL 281 (365)
T ss_pred --HHHHHHh-CCCCcEEEECCCCcHHHHHHHHHhccCCEE
Confidence 1222333 346899999864444556666666555443
No 359
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.22 E-value=10 Score=34.98 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=40.9
Q ss_pred eeEEEEec--CChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHHhhCCCEEEEeCccchHHHHHH
Q 018592 77 KPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGS--TGSIGtqTLdVI~~~pd~F~VvaLaa-gsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~ 143 (353)
|.+.|.|+ |+-||..+..-+.+. .++|+...- .++.+.+.+..+++....+.-.|-...+.+++.
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 74 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKRE--GAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDAL 74 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHC--CCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHH
Confidence 67999996 567999998888775 466665421 245666766666664433343455444555543
No 360
>PRK06940 short chain dehydrogenase; Provisional
Probab=83.17 E-value=13 Score=34.59 Aligned_cols=59 Identities=20% Similarity=0.199 Sum_probs=33.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH---HhhCCCEEEE-eCccchHHHHH
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVAV-RNESLLDEIKE 142 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~---~eFkPk~V~i-~de~~~~~l~~ 142 (353)
.+.|-|+ |.||..+.+-+. ..++|+.+. +|.+.+.+.. ++...+...+ .|-...+.+..
T Consensus 4 ~~lItGa-~gIG~~la~~l~---~G~~Vv~~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~ 66 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG---AGKKVLLAD--YNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKA 66 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh---CCCEEEEEe--CCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHH
Confidence 4555565 789999988874 368888764 4555544433 3333343322 34444444443
No 361
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=83.12 E-value=13 Score=33.51 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=54.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++|.+|..+..+.+.. ..+|+..+-.. +. .+.++++..+.+.-.+... +
T Consensus 140 ~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~~---~--------------- 196 (323)
T cd08241 140 GETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSE--EK-LALARALGADHVIDYRDPD---L--------------- 196 (323)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCH--HH-HHHHHHcCCceeeecCCcc---H---------------
Confidence 368999999999999999999876 45676654332 22 2233445443332211110 1
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
.+.+.++.....+|.+++.+.| ..+...+.+++.+-+
T Consensus 197 -~~~i~~~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~g~ 233 (323)
T cd08241 197 -RERVKALTGGRGVDVVYDPVGG-DVFEASLRSLAWGGR 233 (323)
T ss_pred -HHHHHHHcCCCCcEEEEECccH-HHHHHHHHhhccCCE
Confidence 1223333333468999987665 666666666655433
No 362
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=83.09 E-value=14 Score=35.02 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=54.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|+| +|++|..+..+.+.. .++|++.+. +-+.+ +.++++..+.+.-..+.. +.+
T Consensus 164 ~~~vlV~g-~g~iG~~~~~~a~~~--G~~vi~~~~--~~~~~-~~~~~~g~~~~i~~~~~~---~~~------------- 221 (333)
T cd08296 164 GDLVAVQG-IGGLGHLAVQYAAKM--GFRTVAISR--GSDKA-DLARKLGAHHYIDTSKED---VAE------------- 221 (333)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHC--CCeEEEEeC--ChHHH-HHHHHcCCcEEecCCCcc---HHH-------------
Confidence 35899999 899999999999986 466766543 44443 344778776654322211 111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
.+.+. ..+|.++++..+-..+...+.+++.+=+
T Consensus 222 ---~~~~~---~~~d~vi~~~g~~~~~~~~~~~l~~~G~ 254 (333)
T cd08296 222 ---ALQEL---GGAKLILATAPNAKAISALVGGLAPRGK 254 (333)
T ss_pred ---HHHhc---CCCCEEEECCCchHHHHHHHHHcccCCE
Confidence 11111 2578898875334556666666655433
No 363
>PRK12747 short chain dehydrogenase; Provisional
Probab=83.00 E-value=10 Score=34.15 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=31.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~ 122 (353)
.|.+.|.|+||.||..+.+-+.+. .++|+.+ ..++-+.+.+.+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~--G~~v~~~-~~~~~~~~~~~~~ 47 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLAND--GALVAIH-YGNRKEEAEETVY 47 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCeEEEE-cCCCHHHHHHHHH
Confidence 478999999999999999998875 5666654 3345454444333
No 364
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=82.97 E-value=14 Score=34.76 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=52.5
Q ss_pred eeEEEE-ecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVL-GSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~IL-GSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.++.|. |++|++|..++.+.+.. ..+|++.+. +-++ .+.++++..+.+.-.+.... .
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~--~~~~-~~~~~~~g~~~~i~~~~~~~---~-------------- 201 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKAD--GIKVINIVR--RKEQ-VDLLKKIGAEYVLNSSDPDF---L-------------- 201 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCCcEEEECCCccH---H--------------
Confidence 356665 99999999999998876 457777543 3333 34556677776654332111 1
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcC
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g 192 (353)
+.+.++.....+|+|++++.| ......+.+++.|
T Consensus 202 --~~v~~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~ 235 (324)
T cd08291 202 --EDLKELIAKLNATIFFDAVGG-GLTGQILLAMPYG 235 (324)
T ss_pred --HHHHHHhCCCCCcEEEECCCc-HHHHHHHHhhCCC
Confidence 112223333358899987654 3334445555443
No 365
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=82.90 E-value=12 Score=34.46 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=37.7
Q ss_pred CeeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEee----cCCHHHHHHHHHhhCCCEEEEeCccchHHHHHH
Q 018592 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAA----GSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaa----gsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~ 143 (353)
.|.+.|.|+| +-||..+..-+.+. .++|+...- .++-+.+.+...+..+-.++..|-...+.+++.
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~ 77 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAA--GAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEET 77 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHH
Confidence 3679999987 67999999888875 566654321 233344443333333223333455555555443
No 366
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=82.88 E-value=11 Score=38.79 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=106.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
+.-+.|.||||+.|.=+.+-..+.-.+ +.-|++|.++|.....+..|+....- .. +
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~----~aLAgRs~~kl~~l~~~LG~~~~~~p----------------~~--~-- 61 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLT----AALAGRSSAKLDALRASLGPEAAVFP----------------LG--V-- 61 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCc----hhhccCCHHHHHHHHHhcCccccccC----------------CC--C--
Confidence 357999999999999999988876433 24457899999999999998775431 11 0
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCc--cCcHHHHHHHHcCCcEeeecccceeecccc--hhHHhhhcCCeEeec---CCch
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGC--AGLKPTVAAIEAGKDIALANKETLIAGGPF--VLPLAHKHNIKILPA---DSEH 228 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~--aGL~pT~~Ai~~gK~IaLANKESLV~aG~l--i~~~a~~~~~~IlPV---DSEH 228 (353)
+.++.+++.. +++|+|-.-=+ .|+.=.-+++.+|-+-+=-.-|..++==.+ --+.|++.|+.|+|- ||=-
T Consensus 62 -p~~~~~~~~~--~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDsIP 138 (382)
T COG3268 62 -PAALEAMASR--TQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCGFDSIP 138 (382)
T ss_pred -HHHHHHHHhc--ceEEEeccccccccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCCCCcCc
Confidence 6778888754 67888763322 356566778899998887777877653211 123567789999884 6655
Q ss_pred hH--HHHhhcCCCCC------CcceEEEEecCCcCCCCCh
Q 018592 229 SA--IFQCIQGLPEG------ALRRIILTASGGAFRDWPV 260 (353)
Q Consensus 229 sA--IfQ~L~g~~~~------~v~kIiLTASGGPFr~~~~ 260 (353)
+- +++|++-..+. ..+-+...-+|+=+..-+.
T Consensus 139 sDl~v~~l~~~~~~d~~~~~~~t~l~l~s~t~~g~S~GTa 178 (382)
T COG3268 139 SDLGVYALLKQALPDGTEELIATHLALGSFTGSGISGGTA 178 (382)
T ss_pred cchHHHHHHHhhCcccccchhhhheeeeecccCCcccccH
Confidence 54 47777654444 3445555566644444443
No 367
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=82.77 E-value=7.5 Score=39.83 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=31.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~ 121 (353)
.|++.|.|+||.||.....-+.+. ..+|++++ +|-+.+.+..
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~--G~~Vi~l~--r~~~~l~~~~ 219 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQ--GAKVVALT--SNSDKITLEI 219 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHH
Confidence 478999999999999999888765 57888875 3445554433
No 368
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=82.74 E-value=12 Score=35.11 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=53.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.+|.|.| +|++|..++.+.+.. .+ +|++.+ ++-++. +.++++.-..+...+++..
T Consensus 169 ~~vlI~g-~g~vg~~~~~~a~~~--g~~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~------------------ 224 (344)
T cd08284 169 DTVAVIG-CGPVGLCAVLSAQVL--GAARVFAVD--PVPERL-ERAAALGAEPINFEDAEPV------------------ 224 (344)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHc--CCceEEEEc--CCHHHH-HHHHHhCCeEEecCCcCHH------------------
Confidence 6899997 799999999999986 45 566652 333333 3345565322111111111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
+.+.++.....+|+++++..+-..+...+..++.+-+
T Consensus 225 --~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~ 261 (344)
T cd08284 225 --ERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGV 261 (344)
T ss_pred --HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCE
Confidence 1223333334689999987665667777777655443
No 369
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=82.72 E-value=8.1 Score=37.63 Aligned_cols=91 Identities=13% Similarity=0.267 Sum_probs=56.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
++|.|.|+ |.||..++.+.+.. ..+|++.+.. -++..+.++++..+.+.-..+ .+.
T Consensus 185 ~~VlV~G~-G~vG~~avq~Ak~~--Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi~~~~--~~~----------------- 240 (360)
T PLN02586 185 KHLGVAGL-GGLGHVAVKIGKAF--GLKVTVISSS--SNKEDEAINRLGADSFLVSTD--PEK----------------- 240 (360)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCEEEEEeCC--cchhhhHHHhCCCcEEEcCCC--HHH-----------------
Confidence 57888776 99999999999987 4567765432 345556677788766542211 111
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
+.++. ..+|+|+++..+...+...+..++.|=++.
T Consensus 241 ---~~~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 241 ---MKAAI--GTMDYIIDTVSAVHALGPLLGLLKVNGKLI 275 (360)
T ss_pred ---HHhhc--CCCCEEEECCCCHHHHHHHHHHhcCCcEEE
Confidence 11111 147999998554344555666666655433
No 370
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=82.72 E-value=10 Score=38.53 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=74.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh--CCCEEEEe-CccchHHHHHHhhcCCCCcEE
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQVVAVR-NESLLDEIKEALANVEEKPEI 153 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF--kPk~V~i~-de~~~~~l~~~l~~~~~~~~v 153 (353)
.||+|=| -|-||+..++.+.+.+++++|||+.--...+-++.+.+.= ..+|..-- .++.. +.-.+..+++
T Consensus 2 ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~------~~v~g~~I~v 74 (335)
T COG0057 2 IKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDA------LVVNGKGIKV 74 (335)
T ss_pred cEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCe------EEECCceEEE
Confidence 4677776 7999999999999987689999998867788888887643 23332210 00000 0001234556
Q ss_pred EecHH-HHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcC--CcEee
Q 018592 154 LAGEQ-GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG--KDIAL 197 (353)
Q Consensus 154 ~~G~~-gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g--K~IaL 197 (353)
+.-.+ ....-... .+|+||.+--.+.|-+-.-.-+++| |+|.+
T Consensus 75 ~~~~~p~~l~w~d~-gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~i 120 (335)
T COG0057 75 LAERDPANLPWADL-GVDIVVECTGKFTGREKAEKHLKAGGAKKVLI 120 (335)
T ss_pred EecCChHHCCcccc-CccEEEECCCCccchhhHHHHHHhcCCCEEEE
Confidence 55544 44444433 5889999988888887777678886 76665
No 371
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=82.70 E-value=16 Score=35.56 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=56.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
-.+|.|.|+ |.||..++.+.+.. .. +|++.. .+-++ .+.++++..+.+.-..+. ...+.
T Consensus 186 g~~VlV~G~-G~iG~~a~q~Ak~~--G~~~Vi~~~--~~~~~-~~~a~~~Ga~~~i~~~~~-~~~~~------------- 245 (368)
T TIGR02818 186 GDTVAVFGL-GGIGLSVIQGARMA--KASRIIAID--INPAK-FELAKKLGATDCVNPNDY-DKPIQ------------- 245 (368)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEc--CCHHH-HHHHHHhCCCeEEccccc-chhHH-------------
Confidence 358999996 99999999999876 34 566653 33343 345577887665422110 00111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHc
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~ 191 (353)
+.+.++... .+|+|+++..+-..+...+..++.
T Consensus 246 ---~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~~~ 278 (368)
T TIGR02818 246 ---EVIVEITDG-GVDYSFECIGNVNVMRAALECCHK 278 (368)
T ss_pred ---HHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhc
Confidence 123333333 689999996665667777777755
No 372
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=82.62 E-value=3.4 Score=46.83 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=32.5
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCC--CceEEEEEeecCC
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHE--DKFRVVALAAGSN 113 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~p--d~F~VvaLaagsN 113 (353)
..+++|.|.|+||+||...++-+.+.+ ..++|+++.-..+
T Consensus 969 ~~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~ 1010 (1389)
T TIGR03443 969 STPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKS 1010 (1389)
T ss_pred CCCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCC
Confidence 446889999999999999998777665 5689999875433
No 373
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.40 E-value=14 Score=34.49 Aligned_cols=64 Identities=11% Similarity=-0.029 Sum_probs=39.0
Q ss_pred CeeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeecC--CHHHHHHHHHhhCCCEEEEeCccchHHHHH
Q 018592 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (353)
Q Consensus 76 ~k~I~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaags--Nv~lL~~Q~~eFkPk~V~i~de~~~~~l~~ 142 (353)
.|.+.|.|++ +-||..+-+.+.+. .++|+ +++++ +.+.+.+.+++..-...+-.|-...+.+++
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~--G~~V~-l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 77 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAA--GAELA-FTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDA 77 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHC--CCEEE-EEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHH
Confidence 3689999997 66999999888875 67775 44432 235555555554322333345444444443
No 374
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=82.35 E-value=22 Score=34.51 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=56.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
..+|.|+|+ |+||..++.+.+.. .. +|+++. ++-+++. .++++..+.+.-..+.. +.+.+
T Consensus 187 g~~VlV~G~-G~vG~~a~~~ak~~--G~~~vi~~~--~~~~~~~-~~~~lGa~~~i~~~~~~-~~~~~------------ 247 (368)
T cd08300 187 GSTVAVFGL-GAVGLAVIQGAKAA--GASRIIGID--INPDKFE-LAKKFGATDCVNPKDHD-KPIQQ------------ 247 (368)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEe--CCHHHHH-HHHHcCCCEEEcccccc-hHHHH------------
Confidence 468999985 99999999999986 35 466554 3344443 55778876654222110 01111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHc
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~ 191 (353)
.+.++... .+|+|+++..+...+.-.+.+++.
T Consensus 248 ----~v~~~~~~-g~d~vid~~g~~~~~~~a~~~l~~ 279 (368)
T cd08300 248 ----VLVEMTDG-GVDYTFECIGNVKVMRAALEACHK 279 (368)
T ss_pred ----HHHHHhCC-CCcEEEECCCChHHHHHHHHhhcc
Confidence 12222222 689999986665677777777754
No 375
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=82.34 E-value=14 Score=34.37 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=60.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++|++|..++.+.+... ..+|++.+... +. .+.++++..+.+.-..+ .+.+.
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G-~~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~----~~~~~------------ 209 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLT-GLTVIATASRP--ES-IAWVKELGADHVINHHQ----DLAEQ------------ 209 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcC-CcEEEEEcCCh--hh-HHHHHhcCCcEEEeCCc----cHHHH------------
Confidence 4689999999999999999998873 26777765432 22 23346677655432111 11111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEee
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaL 197 (353)
+... ....+|.+++.+.|-..+...+.+++.+-++..
T Consensus 210 ----i~~~-~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~ 246 (336)
T cd08252 210 ----LEAL-GIEPVDYIFCLTDTDQHWDAMAELIAPQGHICL 246 (336)
T ss_pred ----HHhh-CCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEE
Confidence 1111 123589999887666677777888876655443
No 376
>PLN02740 Alcohol dehydrogenase-like
Probab=82.32 E-value=12 Score=36.72 Aligned_cols=92 Identities=9% Similarity=0.091 Sum_probs=56.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
-.+|.|+|+ |+||..++.+.+.. .. +|+++.. +-++ .+.++++..+.+.-.++.. ..+.
T Consensus 199 g~~VlV~G~-G~vG~~a~q~ak~~--G~~~Vi~~~~--~~~r-~~~a~~~Ga~~~i~~~~~~-~~~~------------- 258 (381)
T PLN02740 199 GSSVAIFGL-GAVGLAVAEGARAR--GASKIIGVDI--NPEK-FEKGKEMGITDFINPKDSD-KPVH------------- 258 (381)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC--CCCcEEEEcC--ChHH-HHHHHHcCCcEEEeccccc-chHH-------------
Confidence 358999996 99999999999876 35 4666543 3333 3455777766543211100 0111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHc
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~ 191 (353)
+.+.++... .+|+|+++..+...+.-.+.+++.
T Consensus 259 ---~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~~~ 291 (381)
T PLN02740 259 ---ERIREMTGG-GVDYSFECAGNVEVLREAFLSTHD 291 (381)
T ss_pred ---HHHHHHhCC-CCCEEEECCCChHHHHHHHHhhhc
Confidence 122333333 689999987766677777776655
No 377
>PRK05599 hypothetical protein; Provisional
Probab=82.12 E-value=14 Score=33.57 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=31.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
|.+.|.|+|+-||.....-+.+ .++|+.+ ++|.+.+.+.+++.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~---g~~Vil~--~r~~~~~~~~~~~l 43 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH---GEDVVLA--ARRPEAAQGLASDL 43 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC---CCEEEEE--eCCHHHHHHHHHHH
Confidence 4588999999999999887763 5777665 35666666555544
No 378
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=81.83 E-value=11 Score=36.67 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=32.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkP 126 (353)
.+++.|+|. |-+|+++...++++. .+|... .++.+. .++++++..
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~G--a~V~v~--~r~~~~-~~~~~~~G~ 196 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALG--ANVTVG--ARKSAH-LARITEMGL 196 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC--CEEEEE--ECCHHH-HHHHHHcCC
Confidence 578999996 889999999999874 566553 445444 345555543
No 379
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=81.80 E-value=9.7 Score=41.09 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=33.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|++.|.|+||.||..+..-+.+. .++|+.+. +|.+.+.+...++
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~--Ga~Vvi~~--r~~~~~~~~~~~l 458 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAE--GAHVVLAD--LNLEAAEAVAAEI 458 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 367999999999999999988875 57787764 4555555544443
No 380
>PRK06720 hypothetical protein; Provisional
Probab=81.76 E-value=16 Score=32.52 Aligned_cols=81 Identities=10% Similarity=0.057 Sum_probs=47.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHH---HHHHHhhCCCEEE-EeCccchHHHHHHhhcCCCCc
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL---ADQVKRFKPQVVA-VRNESLLDEIKEALANVEEKP 151 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL---~~Q~~eFkPk~V~-i~de~~~~~l~~~l~~~~~~~ 151 (353)
.|.+.|.|++|.||......+.+. .++|+.. .+ +-+.+ .++..+..++... ..|-...+++++...
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~--G~~V~l~-~r-~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~------ 85 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQ--GAKVIVT-DI-DQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVIS------ 85 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC--CCEEEEE-EC-CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH------
Confidence 468999999999999999988875 4666544 33 33333 3444444445432 345555555554321
Q ss_pred EEEecHHHHHHHhcCCCCcEEEEe
Q 018592 152 EILAGEQGVIEAARHPDAVTVVTG 175 (353)
Q Consensus 152 ~v~~G~~gl~~~a~~~~~D~Vv~A 175 (353)
.+ +.....+|++|+.
T Consensus 86 -------~~--~~~~G~iDilVnn 100 (169)
T PRK06720 86 -------IT--LNAFSRIDMLFQN 100 (169)
T ss_pred -------HH--HHHcCCCCEEEEC
Confidence 11 1123468898886
No 381
>PLN02775 Probable dihydrodipicolinate reductase
Probab=81.55 E-value=13 Score=36.98 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=28.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
.||+|.|++|=.|+.+.+-+.+ +.|++|+...
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~--~~~~Lv~~~~ 43 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVS--AGLQLVPVSF 43 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhc--CCCEEEEEec
Confidence 4899999999999999999998 5699999544
No 382
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.46 E-value=1.3 Score=43.60 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=31.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCC-----CceEEEEEeecCCHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHE-----DKFRVVALAAGSNITLLA 118 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~p-----d~F~VvaLaagsNv~lL~ 118 (353)
|-||+|.|+||+||.+...-+...+ +.++|+.+--..+.+++.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~ 49 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALE 49 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccc
Confidence 5689999999999999988776643 235888876555544443
No 383
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.40 E-value=18 Score=33.15 Aligned_cols=64 Identities=8% Similarity=-0.014 Sum_probs=38.2
Q ss_pred eeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeecCC--HHHHHHHHHhhCCCEEEEeCccchHHHHHH
Q 018592 77 KPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSN--ITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaagsN--v~lL~~Q~~eFkPk~V~i~de~~~~~l~~~ 143 (353)
|.+.|.|++ +-||..+..-+.+. .++|+.. +++. .+.+.+.+++++...+.-.|-...+.+++.
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 78 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRAL--GAELAVT-YLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAV 78 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEE-eCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHH
Confidence 689999988 48999999988875 5666553 3321 233455555554323333454444444443
No 384
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=81.33 E-value=5.3 Score=41.46 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=36.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe-ecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA-AGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa-agsNv~lL~~Q~~eF 124 (353)
--++|+||||+-|+-+.+-+.+.. .|+-..|+ ||+|-++|.+-.++-
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~-~~~~~slavAGRn~~KL~~vL~~~ 53 (423)
T KOG2733|consen 6 YDVVIYGASGFTGKYIVEEAVSSQ-VFEGLSLAVAGRNEKKLQEVLEKV 53 (423)
T ss_pred eeEEEEccccccceeeHHHHhhhh-cccCceEEEecCCHHHHHHHHHHH
Confidence 358999999999999888766532 46666664 789999998877654
No 385
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=81.24 E-value=18 Score=31.83 Aligned_cols=94 Identities=18% Similarity=0.213 Sum_probs=54.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++| +|..+..+.+... .+|++++.. -+. .+.++++..+.+.-..... .
T Consensus 135 ~~~vli~g~~~-~G~~~~~~a~~~g--~~v~~~~~~--~~~-~~~~~~~g~~~~~~~~~~~---~--------------- 190 (271)
T cd05188 135 GDTVLVLGAGG-VGLLAAQLAKAAG--ARVIVTDRS--DEK-LELAKELGADHVIDYKEED---L--------------- 190 (271)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHcC--CeEEEEcCC--HHH-HHHHHHhCCceeccCCcCC---H---------------
Confidence 45799999988 9999999998763 677776533 222 3334555443332111000 0
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
.+.+. ......+|++++.+.+...+...+.+++.+-++
T Consensus 191 -~~~~~-~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~ 228 (271)
T cd05188 191 -EEELR-LTGGGGADVVIDAVGGPETLAQALRLLRPGGRI 228 (271)
T ss_pred -HHHHH-HhcCCCCCEEEECCCCHHHHHHHHHhcccCCEE
Confidence 01111 233346999999876645566666666554443
No 386
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.15 E-value=18 Score=34.41 Aligned_cols=95 Identities=12% Similarity=0.197 Sum_probs=56.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
.++|.|.| +|+||..++.+.+.. ..+ |++.. ++-+.+ +.++++..+.+.-.+....
T Consensus 167 g~~vlI~g-~g~iG~~~~~lak~~--G~~~v~~~~--~~~~~~-~~~~~~g~~~~v~~~~~~~----------------- 223 (351)
T cd08285 167 GDTVAVFG-IGPVGLMAVAGARLR--GAGRIIAVG--SRPNRV-ELAKEYGATDIVDYKNGDV----------------- 223 (351)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCCeEEEEe--CCHHHH-HHHHHcCCceEecCCCCCH-----------------
Confidence 46899997 699999999999876 343 44433 222333 5566777655432211111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
.+.+.++.....+|+++++..|-..+...+.+++.+=++
T Consensus 224 --~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~ 262 (351)
T cd08285 224 --VEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTI 262 (351)
T ss_pred --HHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 112223333345899999877666667777777665443
No 387
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=80.90 E-value=21 Score=32.85 Aligned_cols=91 Identities=22% Similarity=0.269 Sum_probs=55.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.+|.|.|++|++|..++.+.+.. ..+|+..+. +-+++ +.++++..+.+.-.++ .. .
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~~~~~~~--~~--~--------------- 203 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKL--GYTVVALTG--KEEQA-DYLKSLGASEVLDRED--LL--D--------------- 203 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHc--CCEEEEEeC--CHHHH-HHHHhcCCcEEEcchh--HH--H---------------
Confidence 47999999999999999998876 345665543 33343 3446676665532211 10 0
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
.+.+......+|.|++...| ..+...+.++..+-+
T Consensus 204 --~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~ 238 (325)
T cd05280 204 --ESKKPLLKARWAGAIDTVGG-DVLANLLKQTKYGGV 238 (325)
T ss_pred --HHHHHhcCCCccEEEECCch-HHHHHHHHhhcCCCE
Confidence 01111222358999988666 677777777765433
No 388
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=80.72 E-value=18 Score=37.61 Aligned_cols=100 Identities=13% Similarity=0.085 Sum_probs=60.6
Q ss_pred CCCCeeEEEEecCChHhHHH--HHHHHhCCCceEEEEEeecC-------------CHHHHHHHHHhhCCCEEE-EeCccc
Q 018592 73 WDGPKPISVLGSTGSIGTQT--LDIVAEHEDKFRVVALAAGS-------------NITLLADQVKRFKPQVVA-VRNESL 136 (353)
Q Consensus 73 ~~~~k~I~ILGSTGSIGtqT--LdVI~~~pd~F~VvaLaags-------------Nv~lL~~Q~~eFkPk~V~-i~de~~ 136 (353)
-+++|++.|.|+++.||..+ -.-+ .....|+++...+ |.+.+.+.+++...+... -.|-..
T Consensus 38 ~~ggK~aLVTGaSsGIGlA~~IA~al---~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss 114 (398)
T PRK13656 38 ANGPKKVLVIGASSGYGLASRIAAAF---GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFS 114 (398)
T ss_pred CCCCCEEEEECCCchHhHHHHHHHHH---HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCC
Confidence 37789999999999999982 2332 2368888876433 445566677766554333 345444
Q ss_pred hHHHHHHhhcCCCCcEEEecHHHHHHHhcCCCCcEEEEeccCc------------cCcHHHHHHHH
Q 018592 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGC------------AGLKPTVAAIE 190 (353)
Q Consensus 137 ~~~l~~~l~~~~~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~------------aGL~pT~~Ai~ 190 (353)
.+...+.+. .+.+ ....+|++|+.+.-. +-|+|+...+.
T Consensus 115 ~E~v~~lie-------------~I~e--~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~ 165 (398)
T PRK13656 115 DEIKQKVIE-------------LIKQ--DLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYT 165 (398)
T ss_pred HHHHHHHHH-------------HHHH--hcCCCCEEEECCccCCCCCcccCceeeccccccccccc
Confidence 444443321 1111 124689999886543 25778777754
No 389
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=80.48 E-value=19 Score=35.94 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=55.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.+|.|.| +|.||..++.+.+.. ..+++. +...+-+. .+.++++..+.+....+... .
T Consensus 187 ~~VlV~G-~G~iG~~aiqlAk~~--Ga~~vi-~~d~~~~r-~~~a~~~Ga~~v~~~~~~~~---~--------------- 243 (393)
T TIGR02819 187 STVYIAG-AGPVGLAAAASAQLL--GAAVVI-VGDLNPAR-LAQARSFGCETVDLSKDATL---P--------------- 243 (393)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCceEE-EeCCCHHH-HHHHHHcCCeEEecCCcccH---H---------------
Confidence 5788855 599999999998876 455554 33344444 45577787653221111111 1
Q ss_pred HHHHHHHhcCCCCcEEEEeccCc--------------cCcHHHHHHHHcCCcEee
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGC--------------AGLKPTVAAIEAGKDIAL 197 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~--------------aGL~pT~~Ai~~gK~IaL 197 (353)
+.+.++.....+|+|++++.+- ..+.-.+..++.|=+|.+
T Consensus 244 -~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 244 -EQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred -HHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 1222222223589999975543 256667777777766543
No 390
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=80.33 E-value=24 Score=32.52 Aligned_cols=97 Identities=9% Similarity=0.117 Sum_probs=58.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.+|.|.|++|.+|..++.+.+... .+++..+ ++-+.+.. ++++..+.+.-... .+.+.
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~--~~~~~~~~-~~~~g~~~~~~~~~--~~~~~--------------- 199 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYG--AATIITT--SSEEKVDF-CKKLAAIILIRYPD--EEGFA--------------- 199 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcC--CEEEEEe--CCHHHHHH-HHHcCCcEEEecCC--hhHHH---------------
Confidence 579999999999999999999873 5555533 33343333 35576654443211 11111
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEee
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaL 197 (353)
+.+.++.....+|.+++.. |-..+...+.++..+-++.+
T Consensus 200 -~~~~~~~~~~~~d~~i~~~-~~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 200 -PKVKKLTGEKGVNLVLDCV-GGSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred -HHHHHHhCCCCceEEEECC-chHHHHHHHHHhccCCeEEE
Confidence 1122333334689999876 44667777777766555443
No 391
>PLN02996 fatty acyl-CoA reductase
Probab=80.30 E-value=2.5 Score=43.75 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=31.1
Q ss_pred CCCCeeEEEEecCChHhHHHHHH-HHhCCCceEEEEEee
Q 018592 73 WDGPKPISVLGSTGSIGTQTLDI-VAEHEDKFRVVALAA 110 (353)
Q Consensus 73 ~~~~k~I~ILGSTGSIGtqTLdV-I~~~pd~F~VvaLaa 110 (353)
+-..|+|.|-|+||+||+..++- ++..|+.-+|.+|.=
T Consensus 8 ~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR 46 (491)
T PLN02996 8 FLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLR 46 (491)
T ss_pred HhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 34457899999999999999976 566788778888874
No 392
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=80.20 E-value=16 Score=36.08 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=57.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|+ |.||..++.+.+.. ..+|++++. +-+...+.++++..+.+.-..+ .+
T Consensus 179 g~~VlV~G~-G~vG~~avq~Ak~~--Ga~Vi~~~~--~~~~~~~~a~~lGa~~~i~~~~--~~----------------- 234 (375)
T PLN02178 179 GKRLGVNGL-GGLGHIAVKIGKAF--GLRVTVISR--SSEKEREAIDRLGADSFLVTTD--SQ----------------- 234 (375)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHc--CCeEEEEeC--ChHHhHHHHHhCCCcEEEcCcC--HH-----------------
Confidence 357888886 99999999999987 356776543 2345566678888776542111 11
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.+.. ..+|+|+++..+-..+...+.+++.|=++.
T Consensus 235 ---~v~~~~--~~~D~vid~~G~~~~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 235 ---KMKEAV--GTMDFIIDTVSAEHALLPLFSLLKVSGKLV 270 (375)
T ss_pred ---HHHHhh--CCCcEEEECCCcHHHHHHHHHhhcCCCEEE
Confidence 112222 248999998544445666666666655443
No 393
>PRK06545 prephenate dehydrogenase; Validated
Probab=80.16 E-value=35 Score=33.83 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=27.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~ 118 (353)
++|+|+| +|.||.+...-+++.. ++|.......+-..+.
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~ 39 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLA 39 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHH
Confidence 4799997 5999999999998763 4555555555544443
No 394
>PRK08309 short chain dehydrogenase; Provisional
Probab=80.07 E-value=41 Score=30.38 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=34.2
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC-C-CEEEE-eCccchHHHHHHh
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-P-QVVAV-RNESLLDEIKEAL 144 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk-P-k~V~i-~de~~~~~l~~~l 144 (353)
++.|+|+||.+|. ...-+.+. .|+|..++ ++-+.+.+...+.. + +..++ .|-...++++..+
T Consensus 2 ~vlVtGGtG~gg~-la~~L~~~--G~~V~v~~--R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i 66 (177)
T PRK08309 2 HALVIGGTGMLKR-VSLWLCEK--GFHVSVIA--RREVKLENVKRESTTPESITPLPLDYHDDDALKLAI 66 (177)
T ss_pred EEEEECcCHHHHH-HHHHHHHC--cCEEEEEE--CCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHH
Confidence 5899999998876 44444433 57887764 45555544433231 2 22221 3444555555543
No 395
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=80.00 E-value=11 Score=35.76 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=23.5
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaL 108 (353)
||.|.|+||.||.+...-+.+...+ .|+++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~-~v~~~ 31 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQD-SVVNV 31 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCC-eEEEe
Confidence 6999999999999999999875432 34444
No 396
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=79.98 E-value=9.6 Score=33.54 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=41.3
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeC
Q 018592 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (353)
Q Consensus 87 SIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~d 133 (353)
.||++.+..+-+. ..|+|+=|-...-.+++.+.+++.+|+.+.++.
T Consensus 13 diGkniv~~~L~~-~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~ 58 (128)
T cd02072 13 AVGNKILDHAFTE-AGFNVVNLGVLSPQEEFIDAAIETDADAILVSS 58 (128)
T ss_pred HHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 5899999888775 589999999989999999999999999999865
No 397
>PRK07578 short chain dehydrogenase; Provisional
Probab=79.97 E-value=7 Score=34.04 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=24.4
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
++.|.|++|.||....+.+.+. ++|+++.
T Consensus 2 ~vlItGas~giG~~la~~l~~~---~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR---HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc---CcEEEEe
Confidence 6999999999999999988875 6677654
No 398
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=79.96 E-value=17 Score=30.53 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=38.6
Q ss_pred HhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeC
Q 018592 88 IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (353)
Q Consensus 88 IGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~d 133 (353)
+|.......-+. ..|+|+-|-...-.+.+.+.+.+.+|++|+++-
T Consensus 14 lG~~~~~~~l~~-~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 14 RGAKVIARALRD-AGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 777777776654 479999999999999999999999999999864
No 399
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=79.91 E-value=24 Score=33.30 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=57.9
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEE
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI 153 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v 153 (353)
...++|.|.| .|++|..++.+.+.. .++|++++... +.. +.++++..+.+.-..+ ...+..
T Consensus 164 ~~~~~vlV~g-~g~vg~~~~~~a~~~--G~~vi~~~~~~--~~~-~~~~~~g~~~~i~~~~--~~~~~~----------- 224 (345)
T cd08260 164 KPGEWVAVHG-CGGVGLSAVMIASAL--GARVIAVDIDD--DKL-ELARELGAVATVNASE--VEDVAA----------- 224 (345)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHc--CCeEEEEeCCH--HHH-HHHHHhCCCEEEcccc--chhHHH-----------
Confidence 3346899999 799999999999976 57787775443 232 3345666554432221 001111
Q ss_pred EecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 154 ~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
.+..+... .+|.+++.+.+-..+...+..++.+=++
T Consensus 225 -----~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~ 260 (345)
T cd08260 225 -----AVRDLTGG-GAHVSVDALGIPETCRNSVASLRKRGRH 260 (345)
T ss_pred -----HHHHHhCC-CCCEEEEcCCCHHHHHHHHHHhhcCCEE
Confidence 12223333 5899998866555666667777655443
No 400
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.82 E-value=14 Score=33.97 Aligned_cols=83 Identities=14% Similarity=0.069 Sum_probs=48.5
Q ss_pred CeeEEEEec--CChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcE
Q 018592 76 PKPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPE 152 (353)
Q Consensus 76 ~k~I~ILGS--TGSIGtqTLdVI~~~pd~F~VvaLaa-gsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~ 152 (353)
.|.+.|.|+ ++-||..+..-+.+. .++|+...- .++.+.+.+..++......+..|-...+.++..+.
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~------- 76 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQ--GAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFA------- 76 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHH-------
Confidence 367999996 567999998888775 567765321 23334555555554433444455555555554432
Q ss_pred EEecHHHHHHHhcCCCCcEEEEe
Q 018592 153 ILAGEQGVIEAARHPDAVTVVTG 175 (353)
Q Consensus 153 v~~G~~gl~~~a~~~~~D~Vv~A 175 (353)
.+.+ +...+|++|+.
T Consensus 77 ------~~~~--~~g~iD~lVnn 91 (261)
T PRK08690 77 ------DLGK--HWDGLDGLVHS 91 (261)
T ss_pred ------HHHH--HhCCCcEEEEC
Confidence 1111 22468888887
No 401
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=79.78 E-value=16 Score=36.97 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=47.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEeec--------------CCHHHHHHHHHhhCCCEEEEeCccc
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAG--------------SNITLLADQVKRFKPQVVAVRNESL 136 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd-~F~VvaLaag--------------sNv~lL~~Q~~eFkPk~V~i~de~~ 136 (353)
.+++.|+|+ |.-|.+..+-++++|+ .|+++|+.-. .+.+.|.+.+++.+.+.|.++.+..
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~ 202 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPLA 202 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEeeCcc
Confidence 478999995 5668888888887765 7999998532 2468899999999999999976543
No 402
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=79.64 E-value=20 Score=33.24 Aligned_cols=91 Identities=23% Similarity=0.314 Sum_probs=56.1
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecH
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~ 157 (353)
+|.|.|++|++|..+..+.+.. ..+|++.+.. -++. +.++++..+.+.-.++ ...
T Consensus 148 ~vlI~g~~g~vg~~~~~la~~~--G~~vi~~~~~--~~~~-~~~~~~g~~~~~~~~~--~~~------------------ 202 (323)
T TIGR02823 148 PVLVTGATGGVGSLAVAILSKL--GYEVVASTGK--AEEE-DYLKELGASEVIDRED--LSP------------------ 202 (323)
T ss_pred eEEEEcCCcHHHHHHHHHHHHc--CCeEEEEeCC--HHHH-HHHHhcCCcEEEcccc--HHH------------------
Confidence 8999999999999999999987 4677765532 2333 5667777765443221 110
Q ss_pred HHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 158 ~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.++.. ..+|.+++...+ ..+...+.+++.+-++.
T Consensus 203 -~~~~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v 238 (323)
T TIGR02823 203 -PGKPLEK-ERWAGAVDTVGG-HTLANVLAQLKYGGAVA 238 (323)
T ss_pred -HHHHhcC-CCceEEEECccH-HHHHHHHHHhCCCCEEE
Confidence 0111111 137888887544 45666666666555443
No 403
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=79.23 E-value=26 Score=32.68 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=58.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++|++|..++.+.+..- .++|++.+... ++ .++++++..+.+.-.+.. +.+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~--~~-~~~l~~~g~~~~~~~~~~----~~~------------- 207 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRP--ES-QEWVLELGAHHVIDHSKP----LKA------------- 207 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcH--HH-HHHHHHcCCCEEEECCCC----HHH-------------
Confidence 3589999999999999999988631 46787765332 33 344567777766532221 221
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.++ ....+|+|++.+.+-..+...+..+..+=++.
T Consensus 208 ---~i~~~-~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v 244 (336)
T TIGR02817 208 ---QLEKL-GLEAVSYVFSLTHTDQHFKEIVELLAPQGRFA 244 (336)
T ss_pred ---HHHHh-cCCCCCEEEEcCCcHHHHHHHHHHhccCCEEE
Confidence 12222 12357888876655455666677776554544
No 404
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=79.20 E-value=26 Score=30.85 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=31.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkP 126 (353)
.+|.|+|++|++|..+..+.+.. ..+|++.+- +-+. .+++++|..
T Consensus 106 ~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~--~~~~-~~~~~~~g~ 150 (288)
T smart00829 106 ESVLIHAAAGGVGQAAIQLAQHL--GAEVFATAG--SPEK-RDFLRELGI 150 (288)
T ss_pred CEEEEecCCcHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCC
Confidence 47999999999999999998876 456766642 2233 233466664
No 405
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=79.20 E-value=16 Score=36.86 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=69.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHH------hhCCCEEEEeCccchHHHHHHhhcCC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVE 148 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa-gsNv~lL~~Q~~------eFkPk~V~i~de~~~~~l~~~l~~~~ 148 (353)
+.||+|.|. |-||+..+..+.++| +++++|+.- ..+.+-|+-+.+ +|+..-|...+... +.-.+
T Consensus 5 ~lrVaI~G~-GrIGr~~~r~~~~~~-~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~-------l~~~g 75 (338)
T PLN02358 5 KIRIGINGF-GRIGRLVARVVLQRD-DVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKT-------LLFGE 75 (338)
T ss_pred ceEEEEEee-cHHHHHHHHHHhhCC-CcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCE-------EEECC
Confidence 458999995 999999999988876 499999875 567777766654 33221233211110 00011
Q ss_pred CCcEEEecHHHHHHH-hcCCCCcEEEEeccCccCcHHHHHHHHcC-CcEeeec
Q 018592 149 EKPEILAGEQGVIEA-ARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 199 (353)
Q Consensus 149 ~~~~v~~G~~gl~~~-a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g-K~IaLAN 199 (353)
..++++.-. .-.++ -...++|+|+.+--.+.--+-.-.++++| |+|.+.+
T Consensus 76 ~~i~v~~~~-~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSa 127 (338)
T PLN02358 76 KPVTVFGIR-NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISA 127 (338)
T ss_pred EEEEEEEcC-CcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCC
Confidence 223333221 11121 11247999999877777777677788998 6666653
No 406
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=78.77 E-value=29 Score=31.24 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=34.8
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA 130 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~ 130 (353)
...++|.|.|++|++|..++.+.+.. ..+|+.++- +-+.+ +.++++..+.++
T Consensus 143 ~~g~~vlI~g~~~~~g~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~~~ 194 (325)
T cd08253 143 KAGETVLVHGGSGAVGHAAVQLARWA--GARVIATAS--SAEGA-ELVRQAGADAVF 194 (325)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeC--CHHHH-HHHHHcCCCEEE
Confidence 33478999999999999999999876 467766543 22332 333455555443
No 407
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=78.65 E-value=9.3 Score=34.05 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=42.7
Q ss_pred CCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCeEeecCCchhHHHHhhc
Q 018592 168 DAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 236 (353)
Q Consensus 168 ~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQ~L~ 236 (353)
+.++..-.+.--.-+...+.-++. ..=-.|+||..+.++|+++|.+-++++|.-.+|.+.|.
T Consensus 100 ~~~i~~~~~~~~~e~~~~i~~~~~-------~G~~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al~ 161 (176)
T PF06506_consen 100 GVDIKIYPYDSEEEIEAAIKQAKA-------EGVDVIVGGGVVCRLARKLGLPGVLIESGEESIRRALE 161 (176)
T ss_dssp T-EEEEEEESSHHHHHHHHHHHHH-------TT--EEEESHHHHHHHHHTTSEEEESS--HHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHH-------cCCcEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHHH
Confidence 456666666666666665555443 22345678888999999999999999999999998885
No 408
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=78.31 E-value=9.3 Score=37.70 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=34.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~ 118 (353)
+.||+|.|++|=.|++.++.+.+.| .+++++--.+.....+-
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~-~~~L~aa~~~~~~~~~g 43 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP-DLELVAAFDRPGSLSLG 43 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC-CceEEEEEecCCccccc
Confidence 4679999999999999999999988 48899877666554443
No 409
>PRK08264 short chain dehydrogenase; Validated
Probab=78.22 E-value=11 Score=33.42 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=29.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLAD 119 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~ 119 (353)
.|++.|.|+||.||.....-+.+. .. +|+.++ ++.+.+.+
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~--G~~~V~~~~--r~~~~~~~ 46 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR--GAAKVYAAA--RDPESVTD 46 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CcccEEEEe--cChhhhhh
Confidence 468999999999999999988876 34 454443 55555443
No 410
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=78.16 E-value=31 Score=31.67 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=87.5
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC---CCEEEEeCccchHHHHHHhhcCCCCc---EEEe-----
Q 018592 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK---PQVVAVRNESLLDEIKEALANVEEKP---EILA----- 155 (353)
Q Consensus 87 SIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk---Pk~V~i~de~~~~~l~~~l~~~~~~~---~v~~----- 155 (353)
.||..|-+.++++ .|..+ .....+.+.|.+...+.. -+.+.++.+...+.|.+.|...+..+ .+|-
T Consensus 80 aVG~~Ta~~l~~~--G~~~~-~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~ 156 (240)
T PRK09189 80 AVGEATAEAAREL--GFRHV-IEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVM 156 (240)
T ss_pred EEcHHHHHHHHHc--CCCCC-cCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCC
Confidence 4799999999987 45533 344567888877765431 24666666655667777776555332 2331
Q ss_pred -cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCC-e-EeecCCchhHHH
Q 018592 156 -GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI-K-ILPADSEHSAIF 232 (353)
Q Consensus 156 -G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~-~-IlPVDSEHsAIf 232 (353)
..+.+.++....++|.|+..-.- +++-.+..+...+.-..-++-.+||=|+-+.+.+++.+. + +++=.....+++
T Consensus 157 ~~~~~~~~~l~~~~~d~i~f~S~~--~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~~~~~~ia~~~t~~~l~ 234 (240)
T PRK09189 157 YSPATLSAILGGAPFDAVLLYSRV--AARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASLRAQALIAAMPDEKSLL 234 (240)
T ss_pred CChHHHHHHHhcCCCCEEEEeCHH--HHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhccccceeecCCCCHHHHH
Confidence 12345555666678988766433 345555554322211122456789999999888887642 3 345555566777
Q ss_pred Hhhc
Q 018592 233 QCIQ 236 (353)
Q Consensus 233 Q~L~ 236 (353)
++|.
T Consensus 235 ~~l~ 238 (240)
T PRK09189 235 SLLS 238 (240)
T ss_pred HHhh
Confidence 7765
No 411
>PLN02827 Alcohol dehydrogenase-like
Probab=77.99 E-value=23 Score=34.89 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=55.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
..+|.|.|+ |.||..++.+.+.. .++ |++.. ++-++ .+.++++..+.+.-..+ ..+.+.+
T Consensus 194 g~~VlV~G~-G~vG~~~iqlak~~--G~~~vi~~~--~~~~~-~~~a~~lGa~~~i~~~~-~~~~~~~------------ 254 (378)
T PLN02827 194 GSSVVIFGL-GTVGLSVAQGAKLR--GASQIIGVD--INPEK-AEKAKTFGVTDFINPND-LSEPIQQ------------ 254 (378)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEC--CCHHH-HHHHHHcCCcEEEcccc-cchHHHH------------
Confidence 468999995 99999999999876 453 44432 23333 35667888766542211 0011111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcC
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g 192 (353)
.+.++... .+|.|+++..+...+.-.+..++.|
T Consensus 255 ----~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l~~g 287 (378)
T PLN02827 255 ----VIKRMTGG-GADYSFECVGDTGIATTALQSCSDG 287 (378)
T ss_pred ----HHHHHhCC-CCCEEEECCCChHHHHHHHHhhccC
Confidence 12223322 5899999865545566677777665
No 412
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=77.80 E-value=18 Score=31.84 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=81.9
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh--CCCEEE-EeCccchHHHHHHhhcCCCCcEEE--------e
Q 018592 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQVVA-VRNESLLDEIKEALANVEEKPEIL--------A 155 (353)
Q Consensus 87 SIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF--kPk~V~-i~de~~~~~l~~~l~~~~~~~~v~--------~ 155 (353)
.||..|-+.++++ .|.++-.....+.+.|.+.+.+. ..+.+. ...+.....|.+.|...+..+..+ .
T Consensus 83 avG~~Ta~~l~~~--g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~ 160 (239)
T cd06578 83 AVGPKTAEALREA--GLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPD 160 (239)
T ss_pred EECHHHHHHHHHc--CCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCC
Confidence 6799999999986 67776666777888888888884 444444 444444567777776544222211 1
Q ss_pred cHHHHHHHhcCCCCcEEE-EeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhcCCe--EeecCCchhHHH
Q 018592 156 GEQGVIEAARHPDAVTVV-TGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIK--ILPADSEHSAIF 232 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv-~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~~~~--IlPVDSEHsAIf 232 (353)
..+...+.....+.|.|+ ++-.+ ++..+..+..-....+ .+-.++|-|+-..+.+++.|.+ ++|=+....++.
T Consensus 161 ~~~~~~~~l~~~~~~~iiftS~~~---v~~f~~~~~~~~~~~~-~~~~~~aig~~t~~~l~~~g~~~~~~~~~~~~~~l~ 236 (239)
T cd06578 161 LDAELLELLEEGAIDAVLFTSPST---VRNLLELLGKEGRALL-KNVKIAAIGPRTAEALRELGLKVVIVAESPTLEALL 236 (239)
T ss_pred CcHHHHHHHHcCCCcEEEEeCHHH---HHHHHHHHhhhhhhhh-cCCeEEEECHHHHHHHHHcCCCceeeecCCChHHHH
Confidence 112334445555565444 44444 4444444432111222 3346788899999999988764 334333345555
Q ss_pred Hh
Q 018592 233 QC 234 (353)
Q Consensus 233 Q~ 234 (353)
+.
T Consensus 237 ~~ 238 (239)
T cd06578 237 EA 238 (239)
T ss_pred hh
Confidence 43
No 413
>PRK06849 hypothetical protein; Provisional
Probab=77.64 E-value=22 Score=35.04 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=29.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS 112 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags 112 (353)
.+|+|.|+|+...+|.+...-+.+. .++|+++..+.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~--G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNA--GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 5789999999999888888888876 78888876553
No 414
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.37 E-value=29 Score=32.51 Aligned_cols=63 Identities=14% Similarity=0.034 Sum_probs=39.6
Q ss_pred eeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeecCCH---HHHHHHHHhhCCCEEEEeCccchHHHHHH
Q 018592 77 KPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaagsNv---~lL~~Q~~eFkPk~V~i~de~~~~~l~~~ 143 (353)
|.+.|.|++ +-||..+...+.+. .++|+. ++ +|- +.+.+..+++..+..+..|-...+++++.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~--G~~Vil-~~-r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 73 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQ--GAELAF-TY-LNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSL 73 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHC--CCEEEE-Ee-cCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHH
Confidence 789999997 57999999988875 567764 33 443 34555555554443343455555555443
No 415
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.24 E-value=28 Score=32.05 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=36.6
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEEEeecCCH---HHHHHHHHhhCCCEEEEeCccchHHHHHH
Q 018592 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (353)
Q Consensus 76 ~k~I~ILGSTG--SIGtqTLdVI~~~pd~F~VvaLaagsNv---~lL~~Q~~eFkPk~V~i~de~~~~~l~~~ 143 (353)
.|.+.|.|+++ -||..+..-+.+. .++|+. ++ +|- +.+.+..+++...++.-.|-...+.+++.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~--G~~v~~-~~-r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~ 76 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKH--GAELWF-TY-QSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNL 76 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHc--CCEEEE-Ee-CchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHH
Confidence 46799999996 5999988777764 567664 33 442 22333333333333333454444444443
No 416
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=77.21 E-value=34 Score=31.69 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=55.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.+|.|.| +|.+|..++.+.+.. .++|++++. +-+.+ +.++++..+.+.-..+....
T Consensus 167 ~~vli~g-~g~vG~~~~~la~~~--G~~V~~~~~--s~~~~-~~~~~~g~~~~~~~~~~~~~------------------ 222 (338)
T cd08254 167 ETVLVIG-LGGLGLNAVQIAKAM--GAAVIAVDI--KEEKL-ELAKELGADEVLNSLDDSPK------------------ 222 (338)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHc--CCEEEEEcC--CHHHH-HHHHHhCCCEEEcCCCcCHH------------------
Confidence 4788865 689999999999987 466776643 33333 34466776655433221111
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
+.+ +......+|+|++...+-..+...+.+++.+=++
T Consensus 223 -~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~ 259 (338)
T cd08254 223 -DKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRI 259 (338)
T ss_pred -HHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 112 2222335889998865555666777777665443
No 417
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=77.17 E-value=11 Score=38.39 Aligned_cols=101 Identities=32% Similarity=0.378 Sum_probs=60.5
Q ss_pred HHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh------CCCEEEEeCccchHHHHHHhhcCCCCcEEEecHHHHHHHh
Q 018592 91 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF------KPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA 164 (353)
Q Consensus 91 qTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF------kPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~~a 164 (353)
+.|..++++ +.+|+.=+++.|-..+++.+++. +.|.++|..+...+.+++.+.. +...+-+...+-+.+.
T Consensus 62 ~~L~~~~~~--gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~gDd~~~~v~~~~~~-g~~~~~l~~~~~l~~~- 137 (362)
T PF07287_consen 62 PLLPAAAEK--GIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYGDDLKDEVKELLAE-GETIRPLDTGPPLSEW- 137 (362)
T ss_pred HHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEECccchHhHHHHHhC-CCCCccCCCCCCcchh-
Confidence 456666654 56676667777776666655532 4677777777777777766542 1111111111122211
Q ss_pred cCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecc
Q 018592 165 RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK 200 (353)
Q Consensus 165 ~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANK 200 (353)
..+ +..++...|-.|..+||+.|-+|-|+=.
T Consensus 138 ---~~~--~~~a~aylGa~pI~~AL~~GADIVI~GR 168 (362)
T PF07287_consen 138 ---DDR--IVSANAYLGAEPIVEALEAGADIVITGR 168 (362)
T ss_pred ---ccc--cceEEEecChHHHHHHHHcCCCEEEeCc
Confidence 111 5577888999999999999988766543
No 418
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=77.11 E-value=5.5 Score=38.35 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=28.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCH
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI 114 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv 114 (353)
++|.|+|+||- |.+..+-+.+. .++|++.++...-
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~--g~~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQ--GIEILVTVTTSEG 35 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhC--CCeEEEEEccCCc
Confidence 36999999998 99999988865 5889888776643
No 419
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=77.08 E-value=18 Score=33.83 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=55.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
...+|.|.|++|++|..++.+.+.. .++|++++. +-+.+. .+++| .+.+. +.. .+.+
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~--g~~vi~~~~--~~~~~~-~~~~~-~~~~~--~~~---~~~~------------ 218 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKAL--GAKVIAVTS--SESKAK-IVSKY-ADYVI--VGS---KFSE------------ 218 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHc--CCEEEEEeC--CHHHHH-HHHHH-HHHhc--Cch---hHHH------------
Confidence 3468999999999999999999987 567776654 333332 23444 22221 110 1111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.++ ..+|++++...| ..+...+.+++.+=++.
T Consensus 219 ----~v~~~---~~~d~~ld~~g~-~~~~~~~~~l~~~G~~v 252 (334)
T PRK13771 219 ----EVKKI---GGADIVIETVGT-PTLEESLRSLNMGGKII 252 (334)
T ss_pred ----HHHhc---CCCcEEEEcCCh-HHHHHHHHHHhcCCEEE
Confidence 11221 258999998666 56778888887665533
No 420
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=76.87 E-value=27 Score=34.42 Aligned_cols=132 Identities=12% Similarity=0.151 Sum_probs=80.4
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCC---CceEEEEEeecCCHHHHHHHHHhhCCCEEEEeC----ccc-hHHHHHHhh
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHE---DKFRVVALAAGSNITLLADQVKRFKPQVVAVRN----ESL-LDEIKEALA 145 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~p---d~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~d----e~~-~~~l~~~l~ 145 (353)
+.++||+||.|.. |++.-+++.+.. -+.+|+++..++ +.+.+.++++.-.+..+.- .+. -.++.+.|.
T Consensus 91 ~~~~kiavl~Sg~--g~nl~al~~~~~~~~l~~~i~~visn~--~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~ 166 (289)
T PRK13010 91 GQRPKVVIMVSKF--DHCLNDLLYRWRMGELDMDIVGIISNH--PDLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIE 166 (289)
T ss_pred CCCeEEEEEEeCC--CccHHHHHHHHHCCCCCcEEEEEEECC--hhHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHH
Confidence 4467999999987 888888887643 257888887654 3345889998877776531 111 122333444
Q ss_pred cCCCCcEEEecHHHHH--HHhcCCCCcEEEE----eccCccCcHHHHHHHHcCCcE-----eeecccceeecccchhH
Q 018592 146 NVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGKDI-----ALANKETLIAGGPFVLP 212 (353)
Q Consensus 146 ~~~~~~~v~~G~~gl~--~~a~~~~~D~Vv~----AIvG~aGL~pT~~Ai~~gK~I-----aLANKESLV~aG~li~~ 212 (353)
..+.+.-|+.|---+. ++.... ..-++| -+..+-|..|...|+++|.++ -..+.| +-.|++|.+
T Consensus 167 ~~~~Dlivlagym~il~~~~l~~~-~~~iiNiHpSlLP~f~G~~~~~~ai~~G~k~tG~TvH~v~~~--lD~GpII~Q 241 (289)
T PRK13010 167 TSGAELVVLARYMQVLSDDLSRKL-SGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDD--LDEGPIIEQ 241 (289)
T ss_pred HhCCCEEEEehhhhhCCHHHHhhc-cCCceeeCcccCCCCCCCCHHHHHHHcCCCeEEEEEEEEcCC--CCCCCceEE
Confidence 4444555666653322 122222 112343 356678999999999998653 345544 467888854
No 421
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=76.85 E-value=5 Score=41.09 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=42.1
Q ss_pred ccCCCCCCeeEEEEecCChHhHHHHHHHHhCCCceE-----EEEEe-ecCCHHHHHHHHHhhC
Q 018592 69 FRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFR-----VVALA-AGSNITLLADQVKRFK 125 (353)
Q Consensus 69 ~~~~~~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-----VvaLa-agsNv~lL~~Q~~eFk 125 (353)
-.++|..|-||+|.|+||.||.+.+--+... +-|. +..|. ...|-+++.-++.++.
T Consensus 37 ~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~-~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~ 98 (387)
T TIGR01757 37 LTKSWKKTVNVAVSGAAGMISNHLLFMLASG-EVFGQDQPIALKLLGSERSKEALEGVAMELE 98 (387)
T ss_pred HHhcCCCCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEeccCccchhhhHHHHHHH
Confidence 4689999999999999999999998876642 3343 33333 5778888888877653
No 422
>PLN02256 arogenate dehydrogenase
Probab=76.84 E-value=31 Score=33.85 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=26.3
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (353)
..++|+|+| .|.||.+...-+++. .++|++..-.
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~--G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQ--GHTVLATSRS 68 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhC--CCEEEEEECc
Confidence 345799999 699999999988876 3678875533
No 423
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=76.83 E-value=15 Score=37.13 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=44.6
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEeecC---------------CHHHHHHHHHhhCCCEEEEeCc
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAGS---------------NITLLADQVKRFKPQVVAVRNE 134 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd-~F~VvaLaags---------------Nv~lL~~Q~~eFkPk~V~i~de 134 (353)
..+++.|+|+. .-|.+.++.++++|+ .|+++|..-.. + +.+.+.+++.+.+.|.++.+
T Consensus 124 ~~rrvlIiGag-~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip 197 (456)
T TIGR03022 124 WGRPAVIIGAG-QNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMP 197 (456)
T ss_pred CCceEEEEeCC-HHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecC
Confidence 35789999974 678899999987765 69999976321 2 66778888899998887755
No 424
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.77 E-value=18 Score=29.17 Aligned_cols=87 Identities=23% Similarity=0.282 Sum_probs=50.4
Q ss_pred hHhHHHHH-HHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeC--ccchHH---HHHHhhcCCCCcEEEecH-H-
Q 018592 87 SIGTQTLD-IVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLDE---IKEALANVEEKPEILAGE-Q- 158 (353)
Q Consensus 87 SIGtqTLd-VI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~d--e~~~~~---l~~~l~~~~~~~~v~~G~-~- 158 (353)
.+|-..+. +++++ .|+|.-+-+..+.+.+.+++++++|+.|+++- ...+.. +-+..+....++.++.|= .
T Consensus 14 ~lGl~~la~~l~~~--G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 14 PLGLLYLAAYLRKA--GHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp SHHHHHHHHHHHHT--TBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred hHHHHHHHHHHHHC--CCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 34554443 34443 78888887777779999999999999999864 222222 223333333445555542 1
Q ss_pred -H-HHHHhcC-CCCcEEEEe
Q 018592 159 -G-VIEAARH-PDAVTVVTG 175 (353)
Q Consensus 159 -g-l~~~a~~-~~~D~Vv~A 175 (353)
. -.++.+. +.+|.|+.+
T Consensus 92 t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 92 TADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp GHHHHHHHHHHHTSEEEEEE
T ss_pred hcChHHHhccCcCcceecCC
Confidence 1 2223333 567887765
No 425
>PRK06398 aldose dehydrogenase; Validated
Probab=76.62 E-value=15 Score=33.56 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=26.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
|++.|.|+||.||.++..-+.+. .++|+.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~--G~~Vi~~~ 37 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEE--GSNVINFD 37 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEe
Confidence 68999999999999999998875 57787654
No 426
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=76.44 E-value=36 Score=30.86 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=56.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..++.|.|++|.+|..++.+.+.. ..+|++.+ +. +.+ +.++++..+.+.-.... +.
T Consensus 145 ~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~--~~-~~~-~~~~~~g~~~~~~~~~~----~~-------------- 200 (326)
T cd08272 145 GQTVLIHGGAGGVGHVAVQLAKAA--GARVYATA--SS-EKA-AFARSLGADPIIYYRET----VV-------------- 200 (326)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEe--ch-HHH-HHHHHcCCCEEEecchh----HH--------------
Confidence 468999999999999999999877 46676654 23 443 33456665443321111 11
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
+.+.++.....+|.+++.+.| ..+...+.++..+-+
T Consensus 201 --~~~~~~~~~~~~d~v~~~~~~-~~~~~~~~~l~~~g~ 236 (326)
T cd08272 201 --EYVAEHTGGRGFDVVFDTVGG-ETLDASFEAVALYGR 236 (326)
T ss_pred --HHHHHhcCCCCCcEEEECCCh-HHHHHHHHHhccCCE
Confidence 122333333468999998776 456666666655433
No 427
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=76.27 E-value=34 Score=32.95 Aligned_cols=98 Identities=11% Similarity=0.194 Sum_probs=58.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
..+|.|.| +|.+|..++.+.+... ++ |++.+. +-++ .+.++++..+.+.-.++.. +
T Consensus 188 g~~VlI~g-~g~vG~~~~~lak~~G--~~~vi~~~~--s~~~-~~~~~~~g~~~v~~~~~~~---~-------------- 244 (367)
T cd08263 188 GETVAVIG-VGGVGSSAIQLAKAFG--ASPIIAVDV--RDEK-LAKAKELGATHTVNAAKED---A-------------- 244 (367)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHcC--CCeEEEEeC--CHHH-HHHHHHhCCceEecCCccc---H--------------
Confidence 35788886 7999999999998763 55 555443 2222 2455666665544222111 1
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc-Eeee
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD-IALA 198 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~-IaLA 198 (353)
.+.+.+......+|+|++.+.|.+.+...+.+++.+-+ +.+.
T Consensus 245 --~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 245 --VAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred --HHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 11223333334589999998876567777777766544 3444
No 428
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=76.24 E-value=21 Score=31.58 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=45.0
Q ss_pred EEEecCC----hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeC
Q 018592 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (353)
Q Consensus 80 ~ILGSTG----SIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~d 133 (353)
+|+|..| .||.+.+..+-+. ..|+|+=|-...-.+++.+.+++.+|+.|+++.
T Consensus 4 vvigtv~~D~HdiGk~iv~~~l~~-~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 4 IVLGVIGSDCHAVGNKILDHAFTN-AGFNVVNLGVLSPQEEFIKAAIETKADAILVSS 60 (134)
T ss_pred EEEEEecCChhhHhHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 4556655 5999998887765 579999999999999999999999999999865
No 429
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=76.10 E-value=3.7 Score=37.89 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=24.1
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 79 I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
|.|.|+||+||....+-+.+... .+|+++.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~ 30 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVD 30 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEe
Confidence 57999999999999999988642 2576664
No 430
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=76.00 E-value=17 Score=36.56 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=33.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk 125 (353)
+++++|+|+ |-+|.+++..++.+. .+|+.. .++.+.+.+...+|.
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lG--a~V~v~--d~~~~~~~~l~~~~g 211 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLG--ATVTIL--DINIDRLRQLDAEFG 211 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCC--CeEEEE--ECCHHHHHHHHHhcC
Confidence 567999998 999999999999874 455553 466777666666664
No 431
>PLN02702 L-idonate 5-dehydrogenase
Probab=75.56 E-value=40 Score=32.41 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=58.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.+|.|+| .|++|..++.+.+...-+ .|++. .++-+++ +.++++..+.+...+... ..+.+
T Consensus 183 ~~vlI~g-~g~vG~~~~~~a~~~G~~-~v~~~--~~~~~~~-~~~~~~g~~~~~~~~~~~-~~~~~-------------- 242 (364)
T PLN02702 183 TNVLVMG-AGPIGLVTMLAARAFGAP-RIVIV--DVDDERL-SVAKQLGADEIVLVSTNI-EDVES-------------- 242 (364)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCC-EEEEE--CCCHHHH-HHHHHhCCCEEEecCccc-ccHHH--------------
Confidence 5799997 599999999999986322 13333 2343443 367778877665432110 01111
Q ss_pred HHHHHHH--hcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 157 EQGVIEA--ARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 157 ~~gl~~~--a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
.+.++ .....+|+|++.+.+-..+...+..++.+-++
T Consensus 243 --~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~ 281 (364)
T PLN02702 243 --EVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKV 281 (364)
T ss_pred --HHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 11112 11235899999876667788888888776554
No 432
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.39 E-value=28 Score=32.42 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=37.7
Q ss_pred eeEEEEecCC--hHhHHHHHHHHhCCCceEEEEEeecCCH---HHHHHHHHhhCCCEEEEeCccchHHHHHH
Q 018592 77 KPISVLGSTG--SIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (353)
Q Consensus 77 k~I~ILGSTG--SIGtqTLdVI~~~pd~F~VvaLaagsNv---~lL~~Q~~eFkPk~V~i~de~~~~~l~~~ 143 (353)
|.+.|.|+|+ -||..+..-+.+. .++|+.. + +|- +.+.+..++......+-.|-...+.+++.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~--Ga~V~~~-~-r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~ 75 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQ--GAELAFT-Y-QGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAV 75 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhC--CCEEEEe-c-CchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHH
Confidence 6899999997 7999999988875 5777653 3 332 23333334433233333454444444443
No 433
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=75.18 E-value=43 Score=31.47 Aligned_cols=95 Identities=9% Similarity=0.114 Sum_probs=53.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCcc-chHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~-~~~~l~~~l~~~~~~~~v~~ 155 (353)
.+|.|.|+ |++|..++.+.+.. ..+++..+. ++-+++ ++++++..+.+.-.++. ....+.
T Consensus 163 ~~VlI~g~-g~vg~~~~~la~~~--G~~~v~~~~-~~~~~~-~~~~~~g~~~~i~~~~~~~~~~~~-------------- 223 (341)
T cd08262 163 EVALVIGC-GPIGLAVIAALKAR--GVGPIVASD-FSPERR-ALALAMGADIVVDPAADSPFAAWA-------------- 223 (341)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCcEEEEEC-CCHHHH-HHHHHcCCcEEEcCCCcCHHHHHH--------------
Confidence 57999985 99999999999976 345444332 333443 35667776554432221 111111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCC
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK 193 (353)
.+.+......+|+|++...+...+...+..++.+-
T Consensus 224 ---~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g 258 (341)
T cd08262 224 ---AELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGG 258 (341)
T ss_pred ---HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCC
Confidence 11222333468999987544334555566665543
No 434
>PRK05086 malate dehydrogenase; Provisional
Probab=75.17 E-value=4.2 Score=39.85 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=25.5
Q ss_pred eeEEEEecCChHhHHHHHHHHh-CCCceEEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAE-HEDKFRVVALA 109 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~-~pd~F~VvaLa 109 (353)
+||+|+|+||.||.++.-.+.. .+...+++.+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d 34 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYD 34 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEe
Confidence 4799999999999999877754 55555666655
No 435
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=75.04 E-value=20 Score=35.45 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=26.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaL 108 (353)
||+|.|+||-.|+.+.+-+.+ +.|++|+.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~--~~~~Lv~~ 30 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADA--AGLEIVPT 30 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhc--CCCEEEee
Confidence 699999999999999999988 46999996
No 436
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=75.03 E-value=30 Score=32.01 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=37.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA 130 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~ 130 (353)
..+|.|.|++|++|..+..+.+.. .++|++.+... ++. +.++++..+.+.
T Consensus 147 ~~~vlI~ga~g~vg~~~~~~A~~~--G~~vi~~~~~~--~~~-~~~~~~g~~~~~ 196 (324)
T cd08288 147 DGPVLVTGAAGGVGSVAVALLARL--GYEVVASTGRP--EEA-DYLRSLGASEII 196 (324)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEeCCH--HHH-HHHHhcCCCEEE
Confidence 358999999999999999999887 57788876433 333 334677776554
No 437
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=74.44 E-value=8.7 Score=39.92 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=35.6
Q ss_pred CCCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHH
Q 018592 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (353)
Q Consensus 71 ~~~~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q 120 (353)
.+-..+..|.+.||||=+|+...+++++. .|.|.++. ++.+.-.+.
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkr--gf~vra~V--Rd~~~a~~~ 119 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKR--GFSVRALV--RDEQKAEDL 119 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHC--CCeeeeec--cChhhhhhh
Confidence 34456779999999999999999999987 49999987 444443333
No 438
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.32 E-value=3 Score=41.25 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=33.4
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhC-----CCceEEEEEeecCCHHHHHHHHHhh
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEH-----EDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~-----pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|+||+|+|++|.||.+++--+... ++..+++-+=-+.|.+++..++.++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl 55 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMEL 55 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhh
Confidence 3789999999999999988766531 3334566665555655555444433
No 439
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=74.11 E-value=53 Score=30.42 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=81.6
Q ss_pred CeeEEEEec-CChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccc------hHHHHHHhhcCC
Q 018592 76 PKPISVLGS-TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL------LDEIKEALANVE 148 (353)
Q Consensus 76 ~k~I~ILGS-TGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~------~~~l~~~l~~~~ 148 (353)
|+||+||=| .||--...++-+.+..-..+|+.+..+++-....+.+++..-.+..+...+. -.++.+.+...+
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQ 80 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhC
Confidence 567888766 4555555555555443347888765554334567888888877665432211 123334444334
Q ss_pred CCcEEEecHHHHH--HHhcCCCCcEEEEe----ccCccCcHHHHHHHHcCCc-----EeeecccceeecccchhHHhhhc
Q 018592 149 EKPEILAGEQGVI--EAARHPDAVTVVTG----IVGCAGLKPTVAAIEAGKD-----IALANKETLIAGGPFVLPLAHKH 217 (353)
Q Consensus 149 ~~~~v~~G~~gl~--~~a~~~~~D~Vv~A----IvG~aGL~pT~~Ai~~gK~-----IaLANKESLV~aG~li~~~a~~~ 217 (353)
.+.-|+.|---+. ++.+.+.. -++|= +.-+-|..|...|+.+|.+ +-..+++ +=.|+++.+
T Consensus 81 ~D~iv~~~~~~ii~~~~l~~~~~-~~iNiHpslLP~yrG~~p~~~ai~~g~~~tG~Tvh~~~~~--~D~G~Ii~q----- 152 (200)
T PRK05647 81 PDLVVLAGFMRILGPTFVSAYEG-RIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDEG--LDTGPIIAQ----- 152 (200)
T ss_pred cCEEEhHHhhhhCCHHHHhhccC-CEEEEeCccccCCCCccHHHHHHHcCCCeEEEEEEEEcCC--CcCCCeEEE-----
Confidence 4444555543222 12332221 23432 3448899999999999865 3334432 335666633
Q ss_pred CCeEeecCCchhH--HHHhh
Q 018592 218 NIKILPADSEHSA--IFQCI 235 (353)
Q Consensus 218 ~~~IlPVDSEHsA--IfQ~L 235 (353)
+-+|||.+-++ +++-+
T Consensus 153 --~~~~i~~~dt~~~L~~kl 170 (200)
T PRK05647 153 --AAVPVLAGDTEESLAARV 170 (200)
T ss_pred --EEEecCCCCCHHHHHHHH
Confidence 35677665443 55544
No 440
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=74.06 E-value=13 Score=28.45 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=36.7
Q ss_pred CeeEEEEecCChHhHHHHH--HHHhCCCce-EEEEEeecC-------------------------CHHHHHHHHHhhCCC
Q 018592 76 PKPISVLGSTGSIGTQTLD--IVAEHEDKF-RVVALAAGS-------------------------NITLLADQVKRFKPQ 127 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLd--VI~~~pd~F-~VvaLaags-------------------------Nv~lL~~Q~~eFkPk 127 (353)
...+.|.|.+|| |++|+- ++....... .++.+++.. ....+.+.+++.+|.
T Consensus 2 ~~~~~l~G~~G~-GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 2 GEVILIVGPPGS-GKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CCEEEEECCCCC-cHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 357999999997 777765 445544432 466665554 345566667776767
Q ss_pred EEEEeCc
Q 018592 128 VVAVRNE 134 (353)
Q Consensus 128 ~V~i~de 134 (353)
.+.+.+.
T Consensus 81 viiiDei 87 (148)
T smart00382 81 VLILDEI 87 (148)
T ss_pred EEEEECC
Confidence 7666543
No 441
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=73.98 E-value=26 Score=36.47 Aligned_cols=45 Identities=9% Similarity=0.162 Sum_probs=32.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFk 125 (353)
.|++.|+|+ |.+|+.....+.+. .++|+. +++|.+.+.+.+++++
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~--G~~V~i--~~R~~~~~~~la~~~~ 376 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARA--GAELLI--FNRTKAHAEALASRCQ 376 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHC--CCEEEE--EeCCHHHHHHHHHHhc
Confidence 368999995 89999999988876 356543 3677777766666554
No 442
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=73.95 E-value=25 Score=34.26 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=34.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkP 126 (353)
.++|+|+|+ |.||..++..++.. ...+| .+ ++++.+...+.+++|..
T Consensus 178 ~~~V~ViGa-G~iG~~~a~~L~~~-g~~~V-~v-~~r~~~ra~~la~~~g~ 224 (311)
T cd05213 178 GKKVLVIGA-GEMGELAAKHLAAK-GVAEI-TI-ANRTYERAEELAKELGG 224 (311)
T ss_pred CCEEEEECc-HHHHHHHHHHHHHc-CCCEE-EE-EeCCHHHHHHHHHHcCC
Confidence 356999998 99999999998873 21223 22 35778888888888865
No 443
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=73.90 E-value=43 Score=31.61 Aligned_cols=93 Identities=11% Similarity=0.136 Sum_probs=49.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
-.+|.|.|+ |++|..++.+.+.... .+|++. .++-++ .+.++++..+.++-.++.. +.
T Consensus 167 g~~vlI~g~-g~~g~~~~~~a~~~G~-~~v~~~--~~~~~~-~~~~~~~g~~~~v~~~~~~---~~-------------- 224 (345)
T cd08286 167 GDTVAIVGA-GPVGLAALLTAQLYSP-SKIIMV--DLDDNR-LEVAKKLGATHTVNSAKGD---AI-------------- 224 (345)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCC-CeEEEE--cCCHHH-HHHHHHhCCCceecccccc---HH--------------
Confidence 357888876 9999999998887641 445552 233333 2345566654443222111 11
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcC
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g 192 (353)
+.+.+......+|.|++++.+-..+...+.+++.+
T Consensus 225 --~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~ 259 (345)
T cd08286 225 --EQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG 259 (345)
T ss_pred --HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC
Confidence 12233333346899998874333333333455443
No 444
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=73.71 E-value=16 Score=34.70 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=48.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
+++.|+| +|.||..++.+.+.+ ..+++..+ ..+-+.|.. +..+. ++ |..
T Consensus 146 ~~vlV~G-~G~vG~~a~q~ak~~--G~~~v~~~-~~~~~rl~~-a~~~~----~i-~~~--------------------- 194 (308)
T TIGR01202 146 LPDLIVG-HGTLGRLLARLTKAA--GGSPPAVW-ETNPRRRDG-ATGYE----VL-DPE--------------------- 194 (308)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHc--CCceEEEe-CCCHHHHHh-hhhcc----cc-Chh---------------------
Confidence 4688887 588999888888876 45544433 344444432 22221 11 100
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
++ ....+|+|+++..+-..+.-.+..++.|-++.
T Consensus 195 ~~------~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 195 KD------PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred hc------cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEE
Confidence 00 12358999998666566677777777666554
No 445
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.68 E-value=39 Score=31.08 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=33.3
Q ss_pred CeeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEee-cCCHHHHHHHHHhhC
Q 018592 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFK 125 (353)
Q Consensus 76 ~k~I~ILGST--GSIGtqTLdVI~~~pd~F~VvaLaa-gsNv~lL~~Q~~eFk 125 (353)
.|.+.|.|++ +-||..+..-+.+. .++|+...- .++.+.+.+...+.+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~--G~~v~~~~r~~~~~~~~~~~~~~~~ 57 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNA--GAKLVFTYAGERLEKEVRELADTLE 57 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEecCcccchHHHHHHHHHcC
Confidence 3789999997 89999988888875 567765421 134456666666553
No 446
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.51 E-value=44 Score=31.16 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=23.9
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEE
Q 018592 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVA 107 (353)
Q Consensus 76 ~k~I~ILGSTG--SIGtqTLdVI~~~pd~F~Vva 107 (353)
.|.+.|.|+++ -||..+..-+.+. .++|+.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~--G~~vil 37 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHRE--GAELAF 37 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEE
Confidence 46899999986 7999988888775 567764
No 447
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=73.40 E-value=13 Score=37.28 Aligned_cols=156 Identities=20% Similarity=0.227 Sum_probs=94.3
Q ss_pred eEEEEecCChHhHHHHHHHHhCCC-------ceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCC
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHED-------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK 150 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd-------~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~ 150 (353)
+|+|.| +|-||...|+-|..++. .|+||+++--.. ++ .-+.|.|.. .-.+++..|....
T Consensus 5 nVa~~G-~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~--~~--~skD~~p~n-------l~sewk~~L~~st-- 70 (364)
T KOG0455|consen 5 NVALMG-CGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSES--LV--ASKDVLPEN-------LNSEWKSELIKST-- 70 (364)
T ss_pred cEEEEe-ccchHHHHHHHHHHHhhhhccCceEEEEEEEecccc--cc--cccccChhh-------hchHHHHHHHHhc--
Confidence 678888 47799999998876654 799999874321 11 134555533 3356666554322
Q ss_pred cEEEecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHhhhc--CC---------
Q 018592 151 PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKH--NI--------- 219 (353)
Q Consensus 151 ~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a~~~--~~--------- 219 (353)
...+.=+.-+..++..+.+-++|+--+-.+=..--..+++.|--|+++||...-+-=.--.+++... +.
T Consensus 71 ~~alsLdaLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s~~fi~HEatVG 150 (364)
T KOG0455|consen 71 GSALSLDALIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKSPRFIRHEATVG 150 (364)
T ss_pred CCcccHHHHHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCCCceEEeecccc
Confidence 2244422334447778888888876666555555678999999999999987655433333333221 11
Q ss_pred eEeecCCchhHHHHhhcCCCCCCcceEEEEecC
Q 018592 220 KILPADSEHSAIFQCIQGLPEGALRRIILTASG 252 (353)
Q Consensus 220 ~IlPVDSEHsAIfQ~L~g~~~~~v~kIiLTASG 252 (353)
.=+||=|--+-|-|- | ++|.||-=.=||
T Consensus 151 AGLPiIs~L~eiI~t--G---Dev~kIeGifSG 178 (364)
T KOG0455|consen 151 AGLPIISSLNEIIST--G---DEVHKIEGIFSG 178 (364)
T ss_pred CCchhHHHHHHHHhc--C---CceeEEEEEeec
Confidence 136777776666653 3 346666433344
No 448
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=73.23 E-value=28 Score=32.34 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=53.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.+|.|.| +|++|..++++.+.. ..+|++.+. +-+. .+.++++....+...+..
T Consensus 157 ~~vlV~g-~g~vg~~~~q~a~~~--G~~vi~~~~--~~~~-~~~~~~~g~~~~~~~~~~--------------------- 209 (319)
T cd08242 157 DKVAVLG-DGKLGLLIAQVLALT--GPDVVLVGR--HSEK-LALARRLGVETVLPDEAE--------------------- 209 (319)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCeEEEEcC--CHHH-HHHHHHcCCcEEeCcccc---------------------
Confidence 5799997 699999999999887 466766543 3333 345555665443321100
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
.....+|.+++.+.+-..+.-...+++.+-++.
T Consensus 210 -------~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 210 -------SEGGGFDVVVEATGSPSGLELALRLVRPRGTVV 242 (319)
T ss_pred -------ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 112358899987655455666666776665554
No 449
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=73.20 E-value=27 Score=33.83 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=53.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.+|.|.|+ |+||..++.+.+.. .. +|+++.. +-+++ +.++++..+.+.-..+.. ..+.
T Consensus 186 ~~vlV~G~-g~vG~~~~~~a~~~--G~~~Vi~~~~--~~~~~-~~~~~~ga~~~i~~~~~~-~~~~-------------- 244 (365)
T cd08277 186 STVAVFGL-GAVGLSAIMGAKIA--GASRIIGVDI--NEDKF-EKAKEFGATDFINPKDSD-KPVS-------------- 244 (365)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEeC--CHHHH-HHHHHcCCCcEecccccc-chHH--------------
Confidence 57999985 99999999998876 45 4665543 33333 344677776554322110 0111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~ 191 (353)
+.+.++.. ..+|+|+++..+-..+...+.+++.
T Consensus 245 --~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~ 277 (365)
T cd08277 245 --EVIREMTG-GGVDYSFECTGNADLMNEALESTKL 277 (365)
T ss_pred --HHHHHHhC-CCCCEEEECCCChHHHHHHHHhccc
Confidence 12223333 3588999876555555556666643
No 450
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=72.92 E-value=62 Score=30.67 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=57.4
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEE
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI 153 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v 153 (353)
...+|.|+| +|++|..+..+.+.. .+ .|++++ ++-+++ +.++++..+.+.-..+.. +
T Consensus 175 ~~~~vlI~g-~g~vg~~~~~~a~~~--G~~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~---~------------- 232 (350)
T cd08240 175 ADEPVVIIG-AGGLGLMALALLKAL--GPANIIVVD--IDEAKL-EAAKAAGADVVVNGSDPD---A------------- 232 (350)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHc--CCCeEEEEe--CCHHHH-HHHHHhCCcEEecCCCcc---H-------------
Confidence 346799997 699999999999987 45 454443 333333 344667665432111110 0
Q ss_pred EecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEee
Q 018592 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (353)
Q Consensus 154 ~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaL 197 (353)
.+.+.+.... .+|+|++...+-..+...+.++..+-++.+
T Consensus 233 ---~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 233 ---AKRIIKAAGG-GVDAVIDFVNNSATASLAFDILAKGGKLVL 272 (350)
T ss_pred ---HHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcCCeEEE
Confidence 1223333433 688999876545667777788876655443
No 451
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=72.90 E-value=41 Score=31.54 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=56.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
..+|.|.|++|.+|..++.+.+.. ..+|++.+..+ . .+.++++..+.+.-... . .+.+.
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~---~-~~~~~~~g~~~~~~~~~--~-~~~~~------------ 221 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAW--GAHVTTTCSTD---A-IPLVKSLGADDVIDYNN--E-DFEEE------------ 221 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCcc---h-HHHHHHhCCceEEECCC--h-hHHHH------------
Confidence 468999999999999999998876 45787765322 2 23456666654432211 0 11111
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcE
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~I 195 (353)
+.....+|.|++.+.|- .+...+..+..+=++
T Consensus 222 -------l~~~~~vd~vi~~~g~~-~~~~~~~~l~~~G~~ 253 (350)
T cd08248 222 -------LTERGKFDVILDTVGGD-TEKWALKLLKKGGTY 253 (350)
T ss_pred -------HHhcCCCCEEEECCChH-HHHHHHHHhccCCEE
Confidence 11123589999887665 667777777655443
No 452
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=72.72 E-value=28 Score=33.78 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=49.6
Q ss_pred HHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecHHHHHHH-hcCCCCcEE
Q 018592 94 DIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEA-ARHPDAVTV 172 (353)
Q Consensus 94 dVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~~-a~~~~~D~V 172 (353)
+.+++.| .|+++|.| +|.+....++++|+|+.+.+.. .+++ + .|-+=|.++ .++.++|++
T Consensus 18 ~yv~~~~-gF~~vg~A--~~~~ea~~~i~~~~pDLILLDi---------YmPd-~------~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 18 RYVKQIP-GFSVVGTA--GTLEEAKMIIEEFKPDLILLDI---------YMPD-G------NGIELLPELRSQHYPVDVI 78 (224)
T ss_pred HHHHhCC-CceEEEee--ccHHHHHHHHHhhCCCEEEEee---------ccCC-C------ccHHHHHHHHhcCCCCCEE
Confidence 4566665 69999988 5789999999999999987632 1111 0 022222332 345677776
Q ss_pred EEeccCccCcHHHHHHHHcC
Q 018592 173 VTGIVGCAGLKPTVAAIEAG 192 (353)
Q Consensus 173 v~AIvG~aGL~pT~~Ai~~g 192 (353)
+ |+-+.-..-.-.|++.|
T Consensus 79 ~--iTAA~d~~tI~~alr~G 96 (224)
T COG4565 79 V--ITAASDMETIKEALRYG 96 (224)
T ss_pred E--EeccchHHHHHHHHhcC
Confidence 6 34455566666777776
No 453
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=72.71 E-value=10 Score=33.26 Aligned_cols=57 Identities=21% Similarity=0.405 Sum_probs=44.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccch
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLL 137 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~ 137 (353)
.+++.|+|+-=|.=++ ++.++++.+++-|+|. ++-+..| .-..++|++++..|....
T Consensus 24 ~~~~~IvgaGPSL~~~-i~~lk~~~~~~~iia~--~sa~~~L--~~~gI~Pd~~v~~D~~~~ 80 (170)
T PF01973_consen 24 GKPAIIVGAGPSLDKN-IELLKENRNKAIIIAV--NSALKAL--LKNGIKPDFVVSIDPQFW 80 (170)
T ss_pred CCeEEEEecCCCHHHH-HHHHHhcccCcEEEEe--cHHHHHH--HHcCceEEEEEEcCCCcc
Confidence 4789999999999888 9999999888877763 4444444 466789999999887543
No 454
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=72.66 E-value=9.8 Score=34.79 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=31.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
||+|+|+||.+|+.....+.+. .++|... .++-+.+.++.+++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~--G~~V~v~--~r~~~~~~~l~~~~ 44 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA--GNKIIIG--SRDLEKAEEAAAKA 44 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC--CCEEEEE--EcCHHHHHHHHHHH
Confidence 6999999999999999888875 3677643 45666666655543
No 455
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=72.37 E-value=29 Score=35.93 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=63.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC-CceEEEEEeecCCHHHHHHHHH------hhCCCEEEEeCccchHHHHHHhhcCCC
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEE 149 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~p-d~F~VvaLaagsNv~lL~~Q~~------eFkPk~V~i~de~~~~~l~~~l~~~~~ 149 (353)
.||+|.|. |=||+..|+++.+.+ ..++|+|+---...+.++-..+ +|+.+. ...++.. +.-.+.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v-~~~~g~~-------l~v~gk 131 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADV-KPVGDDA-------ISVDGK 131 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcE-EEecCCE-------EEECCE
Confidence 48999999 999999999987653 4689999854445555543332 232221 1111110 100112
Q ss_pred CcEEEecHHHHHHHh-cCCCCcEEEEeccCccCcHHHHHHHHcC-CcEeee
Q 018592 150 KPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 198 (353)
Q Consensus 150 ~~~v~~G~~gl~~~a-~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g-K~IaLA 198 (353)
.++++. +....++- ...++|+|+.+--.+.--+-.-.++++| |+|.+.
T Consensus 132 ~I~v~~-~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS 181 (395)
T PLN03096 132 VIKVVS-DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 181 (395)
T ss_pred EEEEEE-cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence 233432 12233321 1247999999866665555556678888 555554
No 456
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=72.24 E-value=18 Score=32.85 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=31.6
Q ss_pred eEEEEecCChHhHHHHHHHHhC--CCceEEEEEeecCCHHHHHHHHHhh
Q 018592 78 PISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~--pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.+.|.|+||.||..+..-+.+. ...++|+.+ ++|.+.+.+..++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~--~r~~~~~~~~~~~l 48 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLS--ARNDEALRQLKAEI 48 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEE--EcCHHHHHHHHHHH
Confidence 4789999999999988777652 135777665 45666666655554
No 457
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=72.08 E-value=6 Score=39.44 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=32.3
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeec
Q 018592 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (353)
Q Consensus 74 ~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaag 111 (353)
+.+-||++|||.|.-|++....|..||- |+|.-++++
T Consensus 17 ~k~~rv~LlGArGYTGknlv~Lin~HPy-levthvssr 53 (340)
T KOG4354|consen 17 EKDIRVGLLGARGYTGKNLVRLINNHPY-LEVTHVSSR 53 (340)
T ss_pred CCCceEEEEeccccchhhHHHHhcCCCc-eEEEeeehh
Confidence 4566899999999999999999999996 998877754
No 458
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=71.96 E-value=6 Score=35.10 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=24.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaL 108 (353)
|++.|.|+||.||.+...-+.+......|+++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~ 32 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHAT 32 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 47999999999999999988775334555543
No 459
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=71.74 E-value=40 Score=30.23 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=53.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.++|.|+|++|.+|..++.+.+.. .++|+..+- +. . .+.++++..+.++-.......+
T Consensus 145 ~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~-~~--~-~~~~~~~g~~~~~~~~~~~~~~---------------- 202 (309)
T cd05289 145 GQTVLIHGAAGGVGSFAVQLAKAR--GARVIATAS-AA--N-ADFLRSLGADEVIDYTKGDFER---------------- 202 (309)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCEEEEEec-ch--h-HHHHHHcCCCEEEeCCCCchhh----------------
Confidence 468999999999999999998875 577777653 22 2 3344666654443221110000
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
......+|.+++.+.|. .+...+.++..+-+
T Consensus 203 -------~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~ 233 (309)
T cd05289 203 -------AAAPGGVDAVLDTVGGE-TLARSLALVKPGGR 233 (309)
T ss_pred -------ccCCCCceEEEECCchH-HHHHHHHHHhcCcE
Confidence 11223578899875554 56666666655433
No 460
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=71.68 E-value=55 Score=30.97 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=54.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
...+|.|.| .|++|..++.+.+....+ +|++. .++-++. +.++++..+.+.-.++.....+
T Consensus 163 ~g~~vlV~g-~g~vg~~~~~la~~~G~~-~v~~~--~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~-------------- 223 (341)
T cd05281 163 SGKSVLITG-CGPIGLMAIAVAKAAGAS-LVIAS--DPNPYRL-ELAKKMGADVVINPREEDVVEV-------------- 223 (341)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCc-EEEEE--CCCHHHH-HHHHHhCcceeeCcccccHHHH--------------
Confidence 346788876 599999999999987421 45544 2333443 4556676655432221111122
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
.++.....+|++++.+.+-..+...+..+..+=+
T Consensus 224 ------~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~ 257 (341)
T cd05281 224 ------KSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGR 257 (341)
T ss_pred ------HHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCE
Confidence 2223334588999887655666777777765433
No 461
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=71.64 E-value=13 Score=36.28 Aligned_cols=57 Identities=37% Similarity=0.521 Sum_probs=33.0
Q ss_pred CCeeEEEEecCChHhHHHH-H-HHHhCCC---ceE----------------EEEEee--cC-CHHHHHHHHHhhCCCEEE
Q 018592 75 GPKPISVLGSTGSIGTQTL-D-IVAEHED---KFR----------------VVALAA--GS-NITLLADQVKRFKPQVVA 130 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTL-d-VI~~~pd---~F~----------------VvaLaa--gs-Nv~lL~~Q~~eFkPk~V~ 130 (353)
..+.|.|.|.||| |+.|+ . ++...|+ ..+ .+.+-. +. +.+.+.+.+-+.+|++++
T Consensus 131 ~~~~ilI~G~tGS-GKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~ii 209 (299)
T TIGR02782 131 ARKNILVVGGTGS-GKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRII 209 (299)
T ss_pred cCCeEEEECCCCC-CHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEE
Confidence 3479999999999 66555 3 3333211 112 223321 11 566677777777777777
Q ss_pred Ee
Q 018592 131 VR 132 (353)
Q Consensus 131 i~ 132 (353)
+.
T Consensus 210 vG 211 (299)
T TIGR02782 210 VG 211 (299)
T ss_pred Ee
Confidence 64
No 462
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=71.31 E-value=39 Score=34.39 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=46.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEee-------------cCCHHHHHHHHHhhCCCEEEEeCcc
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAA-------------GSNITLLADQVKRFKPQVVAVRNES 135 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd-~F~VvaLaa-------------gsNv~lL~~Q~~eFkPk~V~i~de~ 135 (353)
.+++.|+|+ |.-|.+..+..+++|+ .|+++|... -.+.+.+.+.+++.+.+.|.++.+.
T Consensus 124 ~rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~ 196 (442)
T TIGR03013 124 KRRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDE 196 (442)
T ss_pred CCcEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECch
Confidence 478999986 6778887777666664 799999872 1367889999999999999998654
No 463
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=71.23 E-value=41 Score=33.53 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=75.1
Q ss_pred HhHHHHHHHHhCCCceEEEEEeecC-CHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecHHHHHHHhcC
Q 018592 88 IGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARH 166 (353)
Q Consensus 88 IGtqTLdVI~~~pd~F~VvaLaags-Nv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~~a~~ 166 (353)
+|...++=+.+.... |+.++.|. |+|.+.....++.|.+.++..+..-..+...+. +.-..
T Consensus 110 ~g~e~l~e~l~~~~g--vIl~~~H~gn~E~~~~~l~~~~~~~~~~yrp~~np~ld~~i~----------------~~R~r 171 (308)
T COG1560 110 EGLEHLEEALANGRG--VILVTPHFGNWELGGRALAQQGPKVTAMYRPPKNPLLDWLIT----------------RGRER 171 (308)
T ss_pred cCHHHHHHHHHcCCC--EEEEecCcchHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH----------------HHHHh
Confidence 466666666655444 55566665 999999999999999777765544433333221 11111
Q ss_pred CCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeeccc--------------chhHHhhhcCCeEeecC
Q 018592 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGP--------------FVLPLAHKHNIKILPAD 225 (353)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~--------------li~~~a~~~~~~IlPVD 225 (353)
....++ ..- ..|+++.+.+++.|..|.++.=+-...++. .+-.+|+++++.++|+=
T Consensus 172 ~~~~~~-~~~--~~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~vip~~ 241 (308)
T COG1560 172 FGGRLL-PRK--GEGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVVPVF 241 (308)
T ss_pred cCCccc-CCC--chhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCEEEEE
Confidence 111111 111 178999999999999998887666655555 23568889999999973
No 464
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=71.21 E-value=21 Score=40.79 Aligned_cols=121 Identities=18% Similarity=0.155 Sum_probs=71.2
Q ss_pred CCCeeEEEEecCCh-H---------hHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHH
Q 018592 74 DGPKPISVLGSTGS-I---------GTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (353)
Q Consensus 74 ~~~k~I~ILGSTGS-I---------GtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~ 143 (353)
...|||.|+||-++ | |+|++..+++. .|+|+++. +|-... +....-.+.+.+. +.
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~--G~~vi~v~--~np~~~--~~d~~~ad~~y~e-p~-------- 69 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE--GYQVVLVN--PNPATI--MTDPAPADTVYFE-PL-------- 69 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc--CCEEEEEe--CCcchh--hcCcccCCeeEEC-CC--------
Confidence 44689999999988 4 68899988876 89999875 342111 1111111222221 11
Q ss_pred hhcCCCCcEEEecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHH------HcCCcEeeecccceeecccc--hhHHhh
Q 018592 144 LANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAI------EAGKDIALANKETLIAGGPF--VLPLAH 215 (353)
Q Consensus 144 l~~~~~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai------~~gK~IaLANKESLV~aG~l--i~~~a~ 215 (353)
-.+.+.++++..++|.|+..+-|-.|+.-..... +.|-++.-.+.|++-.+-+- .+++++
T Consensus 70 ------------~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~ 137 (1068)
T PRK12815 70 ------------TVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMK 137 (1068)
T ss_pred ------------CHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHH
Confidence 1245566666668888888777777777655322 23555555666666554432 234556
Q ss_pred hcCCeE
Q 018592 216 KHNIKI 221 (353)
Q Consensus 216 ~~~~~I 221 (353)
++|...
T Consensus 138 ~~GIpv 143 (1068)
T PRK12815 138 ELGEPV 143 (1068)
T ss_pred HcCcCC
Confidence 666543
No 465
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=70.98 E-value=40 Score=31.44 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=54.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.++.|.| +|.+|..++.+.+.. .++|++++... +++ +.++++..+.+.-.++.
T Consensus 169 ~~vlV~g-~g~vg~~~~~la~~~--g~~v~~~~~~~--~~~-~~~~~~g~~~~~~~~~~--------------------- 221 (329)
T cd08298 169 QRLGLYG-FGASAHLALQIARYQ--GAEVFAFTRSG--EHQ-ELARELGADWAGDSDDL--------------------- 221 (329)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHC--CCeEEEEcCCh--HHH-HHHHHhCCcEEeccCcc---------------------
Confidence 4788887 799999999988876 37887765433 333 44466766543321110
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeee
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLA 198 (353)
....+|.++....+...+...+.+++.+-++.+.
T Consensus 222 --------~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 222 --------PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred --------CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence 0124688877544456677788888776665553
No 466
>PRK08618 ornithine cyclodeaminase; Validated
Probab=70.46 E-value=38 Score=33.19 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=19.9
Q ss_pred CCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 168 DAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 168 ~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
++|+|+++.....-+.. .+++.|+.|.
T Consensus 192 ~aDiVi~aT~s~~p~i~--~~l~~G~hV~ 218 (325)
T PRK08618 192 EADIIVTVTNAKTPVFS--EKLKKGVHIN 218 (325)
T ss_pred cCCEEEEccCCCCcchH--HhcCCCcEEE
Confidence 68999999876644433 7888888864
No 467
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=70.45 E-value=41 Score=34.22 Aligned_cols=89 Identities=20% Similarity=0.329 Sum_probs=62.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeC-ccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN-ESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~d-e~~~~~l~~~l~~~~~~~~v~~ 155 (353)
++|+|.|.- -.|-.++++.+.. ..+|+|++-+.+-. +.++++..++++... ++..+.+++
T Consensus 168 ~~V~I~G~G-GlGh~avQ~Aka~--ga~Via~~~~~~K~---e~a~~lGAd~~i~~~~~~~~~~~~~------------- 228 (339)
T COG1064 168 KWVAVVGAG-GLGHMAVQYAKAM--GAEVIAITRSEEKL---ELAKKLGADHVINSSDSDALEAVKE------------- 228 (339)
T ss_pred CEEEEECCc-HHHHHHHHHHHHc--CCeEEEEeCChHHH---HHHHHhCCcEEEEcCCchhhHHhHh-------------
Confidence 689999987 6899999998876 39999998654433 357888888887643 222222221
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEee
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaL 197 (353)
.+|.+++.++ -.-+.+.+.+++.|=++.+
T Consensus 229 ------------~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 229 ------------IADAIIDTVG-PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred ------------hCcEEEECCC-hhhHHHHHHHHhcCCEEEE
Confidence 1788888877 7778888888887765443
No 468
>PRK07121 hypothetical protein; Validated
Probab=70.44 E-value=3.6 Score=41.97 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=33.4
Q ss_pred CCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccce
Q 018592 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL 203 (353)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESL 203 (353)
.++|+||.+ .|.+||...+.|.++|.+|.|.-|...
T Consensus 19 ~~~DVvVVG-aG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVG-FGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred CccCEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 479999999 999999999999999999999999876
No 469
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=70.36 E-value=44 Score=31.64 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=52.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeC-ccchHHHHHHhhcCCCCcEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRN-ESLLDEIKEALANVEEKPEI 153 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~d-e~~~~~l~~~l~~~~~~~~v 153 (353)
..+|.|.| +|++|..++++.+.. ..+ |+++ .++-+.. +.++++..+.+.-.. .+..+.+
T Consensus 162 g~~vlI~~-~g~vg~~a~~la~~~--G~~~v~~~--~~~~~~~-~~~~~~g~~~~v~~~~~~~~~~l------------- 222 (340)
T TIGR00692 162 GKSVLVTG-AGPIGLMAIAVAKAS--GAYPVIVS--DPNEYRL-ELAKKMGATYVVNPFKEDVVKEV------------- 222 (340)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCcEEEEE--CCCHHHH-HHHHHhCCcEEEcccccCHHHHH-------------
Confidence 35788855 699999999999876 354 5554 3333333 355666665443221 1212222
Q ss_pred EecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCc
Q 018592 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (353)
Q Consensus 154 ~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~ 194 (353)
.++.....+|++++...+-..+...+..++.+-+
T Consensus 223 -------~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~ 256 (340)
T TIGR00692 223 -------ADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGR 256 (340)
T ss_pred -------HHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCE
Confidence 2223334588888875444455666666655543
No 470
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=70.30 E-value=13 Score=34.98 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=37.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecC---------CHHHHHHHHHhhC
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS---------NITLLADQVKRFK 125 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaags---------Nv~lL~~Q~~eFk 125 (353)
.++|+|.| .|.||..+.+.+.++ ..+|++++=.+ |++.|.+..++++
T Consensus 31 ~~~v~I~G-~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g 86 (227)
T cd01076 31 GARVAIQG-FGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHG 86 (227)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcC
Confidence 47899999 699999999999886 79999986432 7777776655543
No 471
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=70.17 E-value=21 Score=28.81 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=55.5
Q ss_pred HhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccc-hHHHHHHhhcCCCCcEEEecHHHHHHHhcC
Q 018592 88 IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL-LDEIKEALANVEEKPEILAGEQGVIEAARH 166 (353)
Q Consensus 88 IGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~-~~~l~~~l~~~~~~~~v~~G~~gl~~~a~~ 166 (353)
||..++.+.+... .+|++.. +|-++ .+.++++..+.+.-.++.. .++++ ++...
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~--~~~~k-~~~~~~~Ga~~~~~~~~~~~~~~i~--------------------~~~~~ 56 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATD--RSEEK-LELAKELGADHVIDYSDDDFVEQIR--------------------ELTGG 56 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEE--SSHHH-HHHHHHTTESEEEETTTSSHHHHHH--------------------HHTTT
T ss_pred hHHHHHHHHHHcC--CEEEEEE--CCHHH-HHHHHhhcccccccccccccccccc--------------------ccccc
Confidence 7899999999875 8888876 34444 4678889988887655443 22333 33333
Q ss_pred CCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
..+|+|++....-..+.-.+.+++.+=++.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v 86 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIV 86 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEE
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEE
Confidence 468999998664566666666666554443
No 472
>PRK07041 short chain dehydrogenase; Provisional
Probab=70.17 E-value=25 Score=30.95 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=29.8
Q ss_pred EEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 80 ~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
.|.|+||.||.+...-+.+. .++|+.+. +|.+.+.+...+.
T Consensus 1 lItGas~~iG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~~ 41 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAE--GARVTIAS--RSRDRLAAAARAL 41 (230)
T ss_pred CeecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 38899999999999988876 57776653 4556666555444
No 473
>PRK06217 hypothetical protein; Validated
Probab=70.14 E-value=3 Score=36.87 Aligned_cols=19 Identities=42% Similarity=0.593 Sum_probs=16.3
Q ss_pred CeeEEEEecCChHhHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDI 95 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdV 95 (353)
|++|+|.|.+|| |++|+--
T Consensus 1 ~~~I~i~G~~Gs-GKSTla~ 19 (183)
T PRK06217 1 MMRIHITGASGS-GTTTLGA 19 (183)
T ss_pred CeEEEEECCCCC-CHHHHHH
Confidence 578999999999 8888754
No 474
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=70.10 E-value=41 Score=32.18 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred EEEEEeecC-CHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecHHHHHHHhcCCCCcEEEEeccCccCc
Q 018592 104 RVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGL 182 (353)
Q Consensus 104 ~VvaLaags-Nv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL 182 (353)
-|+.+++|- |.|.+......+.++..++..+.....+.+.+. +.-......++ ..-.|+
T Consensus 114 gvI~~t~H~GnwE~~~~~l~~~~~~~~~v~~~~~n~~~~~~~~----------------~~R~~~g~~~i----~~~~~~ 173 (298)
T PRK08419 114 PIIVTTAHYGYWELFSLALAAYYGAVSIVGRLLKSAPINEMIS----------------KRREQFGIELI----DKKGAM 173 (298)
T ss_pred CEEEEeeCccHHHHHHHHHHhcCCCeEEEEeCCCChHHHHHHH----------------HHHHHcCCeeE----ECccHH
Confidence 377777774 999887666566556666644333222322211 11111122222 233468
Q ss_pred HHHHHHHHcCCcEeeec------ccceee--------cccchhHHhhhcCCeEeecCC
Q 018592 183 KPTVAAIEAGKDIALAN------KETLIA--------GGPFVLPLAHKHNIKILPADS 226 (353)
Q Consensus 183 ~pT~~Ai~~gK~IaLAN------KESLV~--------aG~li~~~a~~~~~~IlPVDS 226 (353)
+..+.+++.|.-|++.. ++.+.+ -=...-.+|+++|+.|+|+-.
T Consensus 174 r~~l~~Lk~g~~v~il~Dq~~~~~~gv~v~FfG~~a~~~~g~a~LA~k~~apvvpv~~ 231 (298)
T PRK08419 174 KELLKALKQGRALGILVDQNVVPKEGVEVKFFNKRVTHTTIASILARRYNALIIPVFI 231 (298)
T ss_pred HHHHHHHHcCCeEEEEecCCCCCCCCeEEecCCCCcccchhHHHHHHHHCCCEEEEEE
Confidence 88888899988888864 444432 112234588899999999965
No 475
>PRK08118 topology modulation protein; Reviewed
Probab=69.97 E-value=2.9 Score=37.00 Aligned_cols=19 Identities=47% Similarity=0.600 Sum_probs=16.2
Q ss_pred CeeEEEEecCChHhHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDI 95 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdV 95 (353)
|+||.|+|..|| |++||.-
T Consensus 1 m~rI~I~G~~Gs-GKSTlak 19 (167)
T PRK08118 1 MKKIILIGSGGS-GKSTLAR 19 (167)
T ss_pred CcEEEEECCCCC-CHHHHHH
Confidence 578999999998 9998653
No 476
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=69.92 E-value=49 Score=35.24 Aligned_cols=108 Identities=18% Similarity=0.261 Sum_probs=64.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
+.+|+|+|+ |-||.+++...+..-- +|+++- .+-+. .+|++++..+++.+...+. ++... ++ .+...
T Consensus 165 g~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D--~~~~r-le~aeslGA~~v~i~~~e~-~~~~~-----gy-a~~~s 231 (509)
T PRK09424 165 PAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFD--TRPEV-AEQVESMGAEFLELDFEEE-GGSGD-----GY-AKVMS 231 (509)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEe--CCHHH-HHHHHHcCCeEEEeccccc-ccccc-----ch-hhhcc
Confidence 578999997 8999999999998754 566653 45454 4589999999876643210 00000 00 00111
Q ss_pred cH--HHHHHH-hcC-CCCcEEEEeccCccC-------cHHHHHHHHcCCcEee
Q 018592 156 GE--QGVIEA-ARH-PDAVTVVTGIVGCAG-------LKPTVAAIEAGKDIAL 197 (353)
Q Consensus 156 G~--~gl~~~-a~~-~~~D~Vv~AIvG~aG-------L~pT~~Ai~~gK~IaL 197 (353)
.+ +...++ .+. .++|+|+++ +|..| .+-.++.++.|-.|..
T Consensus 232 ~~~~~~~~~~~~~~~~gaDVVIet-ag~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 232 EEFIKAEMALFAEQAKEVDIIITT-ALIPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hhHHHHHHHHHHhccCCCCEEEEC-CCCCcccCcchHHHHHHHhcCCCCEEEE
Confidence 11 111122 221 369999988 45544 3667777888876554
No 477
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=69.91 E-value=28 Score=31.76 Aligned_cols=92 Identities=24% Similarity=0.346 Sum_probs=59.9
Q ss_pred EEEecCC----hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeC--ccchHHHH---HHhhcCCC-
Q 018592 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLDEIK---EALANVEE- 149 (353)
Q Consensus 80 ~ILGSTG----SIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~d--e~~~~~l~---~~l~~~~~- 149 (353)
+|++..+ .||...+..+-+. ..|+|+-|-.+--.+.+.+.+++.+|++|+++- ......++ +.+...+.
T Consensus 85 vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~ 163 (201)
T cd02070 85 VVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLR 163 (201)
T ss_pred EEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCC
Confidence 4666655 6999888877654 589999888888899999999999999999864 22233322 33333333
Q ss_pred -CcEEEecHHHHH-HHhcCCCCcEE
Q 018592 150 -KPEILAGEQGVI-EAARHPDAVTV 172 (353)
Q Consensus 150 -~~~v~~G~~gl~-~~a~~~~~D~V 172 (353)
++.|+.|=..+. +.++...+|..
T Consensus 164 ~~~~i~vGG~~~~~~~~~~~GaD~~ 188 (201)
T cd02070 164 DKVKVMVGGAPVNQEFADEIGADGY 188 (201)
T ss_pred cCCeEEEECCcCCHHHHHHcCCcEE
Confidence 456666543332 24444455543
No 478
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=69.91 E-value=32 Score=33.24 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=30.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF 124 (353)
+||+|+|+ |-+|..+.--+....-..+|+.+ ..|.+++..++.++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~--D~~~~~~~~~a~dL 45 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLI--DINEEKAEGEALDL 45 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEE--eCCcchhhHhHhhH
Confidence 47999996 89999999888776533355544 34556665554433
No 479
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=69.88 E-value=34 Score=30.58 Aligned_cols=145 Identities=12% Similarity=0.150 Sum_probs=81.4
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhh---CCCEEEEeCccchHHHHHHhhcCCCCcE---EE---ec-
Q 018592 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAVRNESLLDEIKEALANVEEKPE---IL---AG- 156 (353)
Q Consensus 87 SIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eF---kPk~V~i~de~~~~~l~~~l~~~~~~~~---v~---~G- 156 (353)
.||..|-+.++++ .|++.-+....+.+.|.+...+. ..+.+.++.+...+.+.+.|...+..+. ++ .-
T Consensus 86 avG~~Ta~~l~~~--G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~ 163 (249)
T PRK05928 86 AIGEKTALALKKL--GGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPK 163 (249)
T ss_pred EECHHHHHHHHHc--CCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCC
Confidence 4688999999986 45555444444555555554443 3456666666666777777765442211 11 11
Q ss_pred --HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHc-CCcEeeecccceeecccchhHHhhhcCC--eEeecCCchhHH
Q 018592 157 --EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA-GKDIALANKETLIAGGPFVLPLAHKHNI--KILPADSEHSAI 231 (353)
Q Consensus 157 --~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~-gK~IaLANKESLV~aG~li~~~a~~~~~--~IlPVDSEHsAI 231 (353)
.+...+.....++|.|+..- -.+..-.+..++. +....+ ++=.++|-|+-..+.++++|. .++|=+.-..++
T Consensus 164 ~~~~~~~~~~~~~~~d~ivftS--~~~v~~~~~~~~~~~~~~~~-~~~~~~aiG~~Ta~~l~~~G~~~~~~~~~~~~~~l 240 (249)
T PRK05928 164 LDGAELLARLQSGEVDAVIFTS--PSTVRAFFSLAPELGRREWL-LSCKAVVIGERTAEALRELGIKVIIVPDSADNEAL 240 (249)
T ss_pred CChHHHHHHHHhCCCCEEEECC--HHHHHHHHHHhcccchhHHH-hCCeEEEeCHHHHHHHHHcCCCcceecCCCChHHH
Confidence 11222222234688877542 2333333333322 111112 223489999999999999874 466766666677
Q ss_pred HHhhc
Q 018592 232 FQCIQ 236 (353)
Q Consensus 232 fQ~L~ 236 (353)
.++|.
T Consensus 241 ~~~l~ 245 (249)
T PRK05928 241 LRALK 245 (249)
T ss_pred HHHHH
Confidence 77765
No 480
>PRK06223 malate dehydrogenase; Reviewed
Probab=69.87 E-value=9.6 Score=36.43 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=30.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~ 121 (353)
|+||+|+|+ |++|..+...+....-. +|+.+-- |-+++..+.
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~--~~~~~~~~~ 43 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDI--VEGVPQGKA 43 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEEC--CCchhHHHH
Confidence 579999999 99999999998876433 6666543 555554443
No 481
>PRK06523 short chain dehydrogenase; Provisional
Probab=69.86 E-value=6.7 Score=35.38 Aligned_cols=31 Identities=39% Similarity=0.389 Sum_probs=26.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
|++.|.|+||.||.++.+-+.+. .++|+++.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~ 40 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLEA--GARVVTTA 40 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHHC--CCEEEEEe
Confidence 67999999999999999988875 67887764
No 482
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=69.65 E-value=40 Score=29.48 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=44.8
Q ss_pred EEEecCC----hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeC
Q 018592 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (353)
Q Consensus 80 ~ILGSTG----SIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~d 133 (353)
+|+|..| .+|...+...-+. ..|+|+-|-.+.-.+.+.+.+.+.+|++|+++.
T Consensus 6 vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 6 VVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVMTSQEEFIDAAIETDADAILVSS 62 (137)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 4666655 4898888887774 579999999999999999999999999999974
No 483
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=69.62 E-value=3.6 Score=43.53 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=34.8
Q ss_pred CCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecc
Q 018592 168 DAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 207 (353)
Q Consensus 168 ~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG 207 (353)
++|+||.+ +|.|||...+.|.++|.+|+|..|-...-|+
T Consensus 7 ~~DVlVVG-~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 7 EFDAVVIG-AGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred ccCEEEEC-ccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 58999998 9999999999999999999999999775543
No 484
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=69.52 E-value=23 Score=29.06 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=36.5
Q ss_pred HhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeC
Q 018592 88 IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (353)
Q Consensus 88 IGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~d 133 (353)
+|...+..+-+. +.|+|+-|-.....+.+.+.+.+.+|++|+++-
T Consensus 14 lG~~~~~~~l~~-~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 14 IGKNIVARALRD-AGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred HHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 666666555443 479999988888899999999999999999864
No 485
>PTZ00325 malate dehydrogenase; Provisional
Probab=69.31 E-value=8.5 Score=38.27 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=27.4
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 018592 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (353)
Q Consensus 72 ~~~~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaL 108 (353)
+...|+||+|.|+.|.||....--+.......+++-+
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~ 40 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLY 40 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 3456889999999999999988877754433444443
No 486
>PRK08462 biotin carboxylase; Validated
Probab=69.16 E-value=23 Score=35.67 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=73.1
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
.+|||.|+|+ |-|+...+.-+++. .++++++....|-.-. ...+-.+.+++.... ..+-+
T Consensus 3 ~~k~ili~~~-g~~~~~~~~~~~~~--G~~~v~~~~~~d~~~~---~~~~ad~~~~~~~~~--------------~~~~y 62 (445)
T PRK08462 3 EIKRILIANR-GEIALRAIRTIQEM--GKEAIAIYSTADKDAL---YLKYADAKICIGGAK--------------SSESY 62 (445)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHc--CCCEEEEechhhcCCc---hhhhCCEEEEeCCCc--------------hhccc
Confidence 4799999997 45566666666665 7888888654442111 112222333331100 01122
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCccCcHHHHH--HHHcCCcEeeecccceeecccch--hHHhhhcCCeEee
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVA--AIEAGKDIALANKETLIAGGPFV--LPLAHKHNIKILP 223 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~--Ai~~gK~IaLANKESLV~aG~li--~~~a~~~~~~IlP 223 (353)
...+.+.++++..++|.|+-+. |+-+-.++++ +-+.|..+.-.+.|++-..++=. +++++++|+...|
T Consensus 63 ~~~~~l~~~~~~~~~D~i~pg~-g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp 134 (445)
T PRK08462 63 LNIPAIISAAEIFEADAIFPGY-GFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIP 134 (445)
T ss_pred CCHHHHHHHHHHcCCCEEEECC-CccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCC
Confidence 3457889999989999999886 5544445443 33556665556767765555322 3455566655544
No 487
>PRK12320 hypothetical protein; Provisional
Probab=69.08 E-value=6.1 Score=43.43 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=26.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLa 109 (353)
||.|.|+||+||+...+-+.+. .++|+++.
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~--G~~Vi~ld 31 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAA--GHTVSGIA 31 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhC--CCEEEEEe
Confidence 6999999999999999977764 57898887
No 488
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.96 E-value=55 Score=30.04 Aligned_cols=95 Identities=11% Similarity=0.102 Sum_probs=54.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEec
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G 156 (353)
.+|.|.|++|.+|..++.+.+.. +.+.++.. .. +.-.+.++++.++.+.-...... .
T Consensus 140 ~~vli~g~~g~~g~~~~~~a~~~-~~~~~~~~---~~-~~~~~~~~~~g~~~~~~~~~~~~---~--------------- 196 (337)
T cd08275 140 QSVLVHSAAGGVGLAAGQLCKTV-PNVTVVGT---AS-ASKHEALKENGVTHVIDYRTQDY---V--------------- 196 (337)
T ss_pred CEEEEEcCcchHHHHHHHHHHHc-cCcEEEEe---CC-HHHHHHHHHcCCcEEeeCCCCcH---H---------------
Confidence 58999999999999999999987 44544432 22 22233445666654432221111 1
Q ss_pred HHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcC-CcEee
Q 018592 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 197 (353)
Q Consensus 157 ~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g-K~IaL 197 (353)
+.+.+... ..+|.+++...| ..+...+.++..+ +-+.+
T Consensus 197 -~~~~~~~~-~~~d~v~~~~g~-~~~~~~~~~l~~~g~~v~~ 235 (337)
T cd08275 197 -EEVKKISP-EGVDIVLDALGG-EDTRKSYDLLKPMGRLVVY 235 (337)
T ss_pred -HHHHHHhC-CCceEEEECCcH-HHHHHHHHhhccCcEEEEE
Confidence 12222332 358999988655 4566666666544 43434
No 489
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=68.90 E-value=49 Score=28.82 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=49.3
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCcc-----chHHHHHHhhcCCC-CcEEEec
Q 018592 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-----LLDEIKEALANVEE-KPEILAG 156 (353)
Q Consensus 87 SIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~-----~~~~l~~~l~~~~~-~~~v~~G 156 (353)
-||.+.+...-+. ..|+|+-+-.....+...+.+++.+|+.++++.-. ...++.+.|+..+. ++.++.|
T Consensus 16 d~g~~iv~~~l~~-~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 16 DRGAKVIATAYAD-LGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred HHHHHHHHHHHHh-CCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4788877766654 47999999999999999999999999999997522 12333344443322 4567766
No 490
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=68.50 E-value=43 Score=32.27 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=55.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F~-VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.+|.|.|+ |++|..++.+.+.. .++ |++.+.. -++. +.++++..+.+.-.++... .
T Consensus 184 ~~vLI~g~-g~vG~a~i~lak~~--G~~~Vi~~~~~--~~~~-~~~~~~g~~~vv~~~~~~~---~-------------- 240 (363)
T cd08279 184 DTVAVIGC-GGVGLNAIQGARIA--GASRIIAVDPV--PEKL-ELARRFGATHTVNASEDDA---V-------------- 240 (363)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCcEEEEcCC--HHHH-HHHHHhCCeEEeCCCCccH---H--------------
Confidence 57999975 99999999999876 354 6555432 2332 3345666544432221111 1
Q ss_pred cHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~Ia 196 (353)
+.+.++.....+|++++...+...+...+.++..+-++.
T Consensus 241 --~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 241 --EAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAV 279 (363)
T ss_pred --HHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEE
Confidence 122233333468999998776666677777776654443
No 491
>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]
Probab=68.32 E-value=18 Score=38.27 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=30.0
Q ss_pred CCeeEEEEecCChHhHHHHH-HHHhCCCceEEEEEee
Q 018592 75 GPKPISVLGSTGSIGTQTLD-IVAEHEDKFRVVALAA 110 (353)
Q Consensus 75 ~~k~I~ILGSTGSIGtqTLd-VI~~~pd~F~VvaLaa 110 (353)
..|+|.|-|+||+.|+-.++ ++|..|+-.+|.-|--
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR 47 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIR 47 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEe
Confidence 45789999999999999986 5567889888888853
No 492
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=68.15 E-value=49 Score=27.92 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCC-CceEEE
Q 018592 78 PISVLGSTGSIGTQTLDIVAEHE-DKFRVV 106 (353)
Q Consensus 78 ~I~ILGSTGSIGtqTLdVI~~~p-d~F~Vv 106 (353)
+|.|+|+ |.+|...++-+.+.. .+|.++
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~iv 29 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLI 29 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEE
Confidence 5899998 999999888777653 345444
No 493
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=68.08 E-value=32 Score=32.71 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=78.2
Q ss_pred CHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcC
Q 018592 113 NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (353)
Q Consensus 113 Nv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~g 192 (353)
|...++++-.+...+.+.+.|=+.....+. . -.+-+.++++..+..+.+. .|+..+.-....+..|
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~------~------n~~~i~~i~~~~~~pv~~g--GGi~s~~d~~~l~~~G 96 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSE------P------NYELIENLASECFMPLCYG--GGIKTLEQAKKIFSLG 96 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCc------c------cHHHHHHHHHhCCCCEEEC--CCCCCHHHHHHHHHCC
Confidence 555555555555567777765332211110 0 1223344444333333222 2555555555555555
Q ss_pred CcEeeecccceeecccchhHHhhhcC--CeEeecCCc------------------hhHHHHhhcCCCCCCcceEEEE--e
Q 018592 193 KDIALANKETLIAGGPFVLPLAHKHN--IKILPADSE------------------HSAIFQCIQGLPEGALRRIILT--A 250 (353)
Q Consensus 193 K~IaLANKESLV~aG~li~~~a~~~~--~~IlPVDSE------------------HsAIfQ~L~g~~~~~v~kIiLT--A 250 (353)
-+-..-|.+.+ -.-.++.+++++++ .-++++|-- .....+.+.......+..|++| .
T Consensus 97 ~~~vvigs~~~-~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~ 175 (258)
T PRK01033 97 VEKVSINTAAL-EDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSID 175 (258)
T ss_pred CCEEEEChHHh-cCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccC
Confidence 44334443322 22245556666654 235566621 1112233322223468899999 6
Q ss_pred cCCcCCCCChhhhhcCCHHHHhcCCCCCCCCc
Q 018592 251 SGGAFRDWPVEKLKEVKVADALKHPNWSMGKK 282 (353)
Q Consensus 251 SGGPFr~~~~e~l~~vT~~~ALkHPnW~MG~K 282 (353)
..|.+++.+.+-++.+ .++.++|.--=|--
T Consensus 176 ~~G~~~G~d~~~i~~~--~~~~~ipvIasGGv 205 (258)
T PRK01033 176 RDGTMKGYDLELLKSF--RNALKIPLIALGGA 205 (258)
T ss_pred CCCCcCCCCHHHHHHH--HhhCCCCEEEeCCC
Confidence 6688888888888775 45688887766653
No 494
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=67.73 E-value=89 Score=28.01 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=34.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA 130 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~ 130 (353)
..++.|.|++|.+|..++.+.+.. ..+|++.+-.. +. .+.++++..+.+.
T Consensus 121 g~~vli~~~~~~~g~~~~~~a~~~--g~~v~~~~~~~--~~-~~~~~~~g~~~~~ 170 (303)
T cd08251 121 GEHILIQTATGGTGLMAVQLARLK--GAEIYATASSD--DK-LEYLKQLGVPHVI 170 (303)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEcCCH--HH-HHHHHHcCCCEEE
Confidence 357999999999999999998876 46677764332 22 2333566666554
No 495
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=67.57 E-value=67 Score=29.90 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=68.1
Q ss_pred HHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchH---HHHHHhhcCCCCcEEE-ecH-HHHHHHh
Q 018592 90 TQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLD---EIKEALANVEEKPEIL-AGE-QGVIEAA 164 (353)
Q Consensus 90 tqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~---~l~~~l~~~~~~~~v~-~G~-~gl~~~a 164 (353)
.++-++.+..|.+.+.||+..+.+.+.+.+.++++++++|=+....... .|+... +... .+++ ..+ +.+.++.
T Consensus 42 ~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~~-~~~i-ik~i~v~~~~~l~~~~ 119 (210)
T PRK01222 42 EQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGDETPEFCRQLKRRY-GLPV-IKALRVRSAGDLEAAA 119 (210)
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc-CCcE-EEEEecCCHHHHHHHH
Confidence 3445566666667889999999999999999999999999997544433 344321 1110 1122 222 2344432
Q ss_pred cC-CCCcEEE-Eecc---CccCcHHHHHHHHcCCcEeeecccceeecc
Q 018592 165 RH-PDAVTVV-TGIV---GCAGLKPTVAAIEAGKDIALANKETLIAGG 207 (353)
Q Consensus 165 ~~-~~~D~Vv-~AIv---G~aGL~pT~~Ai~~gK~IaLANKESLV~aG 207 (353)
+. ..+|.++ ++-+ |-.|..--+..+.. .+ .+..+++||
T Consensus 120 ~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~--~~---~~p~~LAGG 162 (210)
T PRK01222 120 AYYGDADGLLLDAYVGLPGGTGKTFDWSLLPA--GL---AKPWILAGG 162 (210)
T ss_pred hhhccCCEEEEcCCCCCCCCCCCccchHHhhh--cc---CCCEEEECC
Confidence 21 2467555 4433 77788877777632 22 567788887
No 496
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=67.57 E-value=58 Score=31.86 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=56.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEEe
Q 018592 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (353)
Q Consensus 77 k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~~ 155 (353)
.+|.|.| .|++|..++.+.+... . +|++++. +-++ .+.++++..+.+.-..+..-..+
T Consensus 205 ~~VlV~g-~g~vG~~ai~lA~~~G--~~~vi~~~~--~~~~-~~~~~~~g~~~~v~~~~~~~~~~--------------- 263 (384)
T cd08265 205 AYVVVYG-AGPIGLAAIALAKAAG--ASKVIAFEI--SEER-RNLAKEMGADYVFNPTKMRDCLS--------------- 263 (384)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcC--CCEEEEEcC--CHHH-HHHHHHcCCCEEEcccccccccH---------------
Confidence 5799997 5999999999999873 4 4555532 3333 36777788766542211100001
Q ss_pred cHHHHHHHhcCCCCcEEEEeccC-ccCcHHHHHHHHcCCcEe
Q 018592 156 GEQGVIEAARHPDAVTVVTGIVG-CAGLKPTVAAIEAGKDIA 196 (353)
Q Consensus 156 G~~gl~~~a~~~~~D~Vv~AIvG-~aGL~pT~~Ai~~gK~Ia 196 (353)
.+.+.++.....+|+|+++..+ .+.+...+..++.+-++.
T Consensus 264 -~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 264 -GEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIV 304 (384)
T ss_pred -HHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEE
Confidence 1123333333458999988443 224556666776554443
No 497
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.48 E-value=41 Score=33.60 Aligned_cols=157 Identities=14% Similarity=0.119 Sum_probs=82.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHH---HHHHh---------------hCCCEEEEeCc--c
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKR---------------FKPQVVAVRNE--S 135 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~---~Q~~e---------------FkPk~V~i~de--~ 135 (353)
.|++.|+|+++ +|..+...+.+. .++|.+..-.. -+.+. ++..+ -.++.|+.+.. .
T Consensus 5 ~k~v~iiG~g~-~G~~~A~~l~~~--G~~V~~~d~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~ 80 (450)
T PRK14106 5 GKKVLVVGAGV-SGLALAKFLKKL--GAKVILTDEKE-EDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPL 80 (450)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHC--CCEEEEEeCCc-hHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCC
Confidence 37899999988 999888888876 68888765432 22232 22221 12455554321 1
Q ss_pred chHHHHHHhhcCCCCcEEEecHHHHHHHhcCCCCcEEEEeccCccCcHHHHHHHHcCCcEeeecccceeecccchhHHh-
Q 018592 136 LLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA- 214 (353)
Q Consensus 136 ~~~~l~~~l~~~~~~~~v~~G~~gl~~~a~~~~~D~Vv~AIvG~aGL~pT~~Ai~~gK~IaLANKESLV~aG~li~~~a- 214 (353)
...++..+-. .++.++...+. +.+... .=+.||+|..|=.-|-..+.. |+-.........|.+-.++.
T Consensus 81 ~~~~~~~a~~---~~i~~~~~~~~---~~~~~~--~~vI~ITGS~GKTTt~~~l~~---iL~~~g~~~~~~g~ig~~~~~ 149 (450)
T PRK14106 81 DSPPVVQAHK---KGIEVIGEVEL---AYRFSK--APIVAITGTNGKTTTTTLLGE---IFKNAGRKTLVAGNIGYPLID 149 (450)
T ss_pred CCHHHHHHHH---CCCcEEeHHHH---HHhhcC--CCEEEEeCCCchHHHHHHHHH---HHHHcCCCeEEeCcccHHHHH
Confidence 2223333221 23556643222 333333 345699999998888887766 22223233344454333332
Q ss_pred ---h--hcCCeEeecCCchhHHHHhhcCCCCCCcceEEEEecCC
Q 018592 215 ---H--KHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGG 253 (353)
Q Consensus 215 ---~--~~~~~IlPVDSEHsAIfQ~L~g~~~~~v~kIiLTASGG 253 (353)
+ ....-++=+|+.+...+.+++ -+--+||.=|-
T Consensus 150 ~~~~~~~~~~~v~E~~~~~~~~~~~~~------P~i~VITnI~~ 187 (450)
T PRK14106 150 AVEEYGEDDIIVAEVSSFQLETIKEFK------PKVGCILNITP 187 (450)
T ss_pred HHhcCCCCCEEEEEcChhhhccccccC------CCEEEEecCCc
Confidence 1 123345666665443332221 23456776663
No 498
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.45 E-value=19 Score=34.25 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=25.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEee
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaa 110 (353)
.++|+|+|+ |++|.+.-..+.+. .++|...-.
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~--G~~V~l~d~ 34 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFH--GFDVTIYDI 34 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhc--CCeEEEEeC
Confidence 468999996 99999998888876 466766653
No 499
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.26 E-value=49 Score=32.87 Aligned_cols=61 Identities=11% Similarity=0.227 Sum_probs=36.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHH
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIK 141 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~ 141 (353)
+++|.|+|. |-+|....+.+.++ .++|+.+. +|-+...+...++..-.+...|....+.|+
T Consensus 231 ~~~iiIiG~-G~~g~~l~~~L~~~--~~~v~vid--~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~ 291 (453)
T PRK09496 231 VKRVMIVGG-GNIGYYLAKLLEKE--GYSVKLIE--RDPERAEELAEELPNTLVLHGDGTDQELLE 291 (453)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCeEEEEE--CCHHHHHHHHHHCCCCeEEECCCCCHHHHH
Confidence 578999998 99999988888775 34555443 555555444444432334445554444443
No 500
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=67.01 E-value=66 Score=31.29 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=57.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeecCCHHHHHHHHHhhCCCEEEEeCccchHHHHHHhhcCCCCcEEE
Q 018592 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (353)
Q Consensus 76 ~k~I~ILGSTGSIGtqTLdVI~~~pd~F-~VvaLaagsNv~lL~~Q~~eFkPk~V~i~de~~~~~l~~~l~~~~~~~~v~ 154 (353)
..+|.|.| .|++|..++.+.+.. .. +|++ ..++-+++ +.++++....+...+++..
T Consensus 177 g~~vlI~g-~g~vg~~~~~~a~~~--G~~~vi~--~~~~~~~~-~~~~~~g~~~v~~~~~~~~----------------- 233 (375)
T cd08282 177 GDTVAVFG-AGPVGLMAAYSAILR--GASRVYV--VDHVPERL-DLAESIGAIPIDFSDGDPV----------------- 233 (375)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCCEEEE--ECCCHHHH-HHHHHcCCeEeccCcccHH-----------------
Confidence 35788865 599999999999876 33 5666 33454553 4566777632211111111
Q ss_pred ecHHHHHHHhcCCCCcEEEEeccCcc-----------CcHHHHHHHHcCCcEee
Q 018592 155 AGEQGVIEAARHPDAVTVVTGIVGCA-----------GLKPTVAAIEAGKDIAL 197 (353)
Q Consensus 155 ~G~~gl~~~a~~~~~D~Vv~AIvG~a-----------GL~pT~~Ai~~gK~IaL 197 (353)
+.+.++.. ..+|.+++.+.+-+ ++...+..++.+-++.+
T Consensus 234 ---~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 234 ---EQILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred ---HHHHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 12223333 35899999876653 47777888888777643
Done!