BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018593
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 272
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 4 FPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIE 63
PDE++ I + L + L + VCK W +L SD+ + +E VQ DL
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDEFR-------VQHMDL-- 62
Query: 64 SKGVICVDNWRGV 76
S VI V G+
Sbjct: 63 SNSVIEVSTLHGI 75
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 6 DEVIQQILARLPVKSLFRTKTVCKLWNKLTSD 37
D + + IL+ L KSL + VCK W ++TSD
Sbjct: 20 DHIAENILSYLDAKSLCAAELVCKEWYRVTSD 51
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 4 FPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDK 38
PDE++ I + L + L + VCK W +L SD+
Sbjct: 4 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 38
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A
P27 Peptide
Length = 336
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 4 FPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIE 63
PDE++ I + L + L + VCK W +L SD+ + +++ KN L ++ +
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL-DLTGKN--LHPDVTGRLL 68
Query: 64 SKGVI 68
S+GVI
Sbjct: 69 SQGVI 73
>pdb|2C1W|A Chain A, The Structure Of Xendou: A Splicing Independent Snorna
Processing Endoribonuclease
pdb|2C1W|B Chain B, The Structure Of Xendou: A Splicing Independent Snorna
Processing Endoribonuclease
pdb|2C1W|C Chain C, The Structure Of Xendou: A Splicing Independent Snorna
Processing Endoribonuclease
Length = 292
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 153 YNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNG 209
YN+ Y RA G RPD VF ES R ++ + + ++ QF + + + + G
Sbjct: 140 YNIWFQLYSRAPGSRPDSCGFEHVFVGESKRGQEMMGLHNWVQFYLQEKRKNIDYKG 196
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 4 FPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDK 38
PDE++ I + L + L + VCK W +L SD+
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 24/100 (24%)
Query: 146 CDLAKNKYNVVLAGYHRAFG-----------HRPDGTFKCLVFDSESNRWRKFVSVQDYY 194
CD K +++AGY H P+GT E W+ V++ D Y
Sbjct: 9 CDFTK----LIMAGYDLELNNGSTQDFDVMFHGPNGTAY------EGGIWKVHVTLPDDY 58
Query: 195 QFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKI 234
F+ + F+N LH D S + LD+ W +
Sbjct: 59 PFA---SPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPL 95
>pdb|2IE3|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
Length = 309
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 173 KCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALD 225
+CL +N W+ F + DY + + Q+ ++G L D+ I ALD
Sbjct: 132 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALD 184
>pdb|3C5W|C Chain C, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 173 KCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALD 225
+CL +N W+ F + DY + + Q+ ++G L D+ I ALD
Sbjct: 133 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALD 185
>pdb|2IE4|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|C Chain C, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|F Chain F, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3DW8|C Chain C, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|F Chain F, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3K7V|C Chain C, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|C Chain C, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 309
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 173 KCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALD 225
+CL +N W+ F + DY + + Q+ ++G L D+ I ALD
Sbjct: 132 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALD 184
>pdb|3FGA|C Chain C, Structural Basis Of Pp2a And Sgo Interaction
Length = 309
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 173 KCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALD 225
+CL +N W+ F + DY + + Q+ ++G L D+ I ALD
Sbjct: 132 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALD 184
>pdb|2IAE|C Chain C, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|F Chain F, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 309
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 173 KCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALD 225
+CL +N W+ F + DY + + Q+ ++G L D+ I ALD
Sbjct: 132 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALD 184
>pdb|3P71|C Chain C, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a
Length = 304
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 173 KCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALD 225
+CL +N W+ F + DY + + Q+ ++G L D+ I ALD
Sbjct: 132 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALD 184
>pdb|2NYL|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|F Chain F, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|F Chain F, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 293
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 173 KCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALD 225
+CL +N W+ F + DY + + Q+ ++G L D+ I ALD
Sbjct: 131 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALD 183
>pdb|1ITF|A Chain A, Interferon Alpha-2a, Nmr, 24 Structures
pdb|2HYM|B Chain B, Nmr Based Docking Model Of The Complex Between The Human
Type I Interferon Receptor And Human Interferon Alpha-2
pdb|2KZ1|A Chain A, Inter-Molecular Interactions In A 44 Kda
Interferon-Receptor Complex Detected By Asymmetric
Back-Protonation And 2d Noesy
pdb|2LAG|A Chain A, Structure Of The 44 Kda Complex Of Interferon-Alpha2 With
The Extracellular Part Of Ifnar2 Obtained By 2d-Double
Difference Noesy
Length = 165
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 22/75 (29%)
Query: 7 EVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKG 66
E+IQQI +LF TK W++ DK++ LY Q++DL
Sbjct: 58 EMIQQIF------NLFSTKDSSAAWDETLLDKFYTELYQ-----------QLNDL----- 95
Query: 67 VICVDNWRGVTEISL 81
CV GVTE L
Sbjct: 96 EACVIQGVGVTETPL 110
>pdb|2LMS|A Chain A, A Single Galnac Residue On Threonine-106 Modifies The
Dynamics And The Structure Of Interferon Alpha-2a Around
The Glycosylation Site
Length = 166
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 22/75 (29%)
Query: 7 EVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKG 66
E+IQQI +LF TK W++ DK++ LY Q++DL
Sbjct: 59 EMIQQIF------NLFSTKDSSAAWDETLLDKFYTELYQ-----------QLNDL----- 96
Query: 67 VICVDNWRGVTEISL 81
CV GVTE L
Sbjct: 97 EACVIQGVGVTETPL 111
>pdb|1RH2|A Chain A, Recombinant Human Interferon-Alpha 2b
pdb|1RH2|B Chain B, Recombinant Human Interferon-Alpha 2b
pdb|1RH2|C Chain C, Recombinant Human Interferon-Alpha 2b
pdb|1RH2|D Chain D, Recombinant Human Interferon-Alpha 2b
pdb|1RH2|E Chain E, Recombinant Human Interferon-Alpha 2b
pdb|1RH2|F Chain F, Recombinant Human Interferon-Alpha 2b
Length = 165
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 22/75 (29%)
Query: 7 EVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKG 66
E+IQQI +LF TK W++ DK++ LY Q++DL
Sbjct: 58 EMIQQIF------NLFSTKDSSAAWDETLLDKFYTELYQ-----------QLNDL----- 95
Query: 67 VICVDNWRGVTEISL 81
CV GVTE L
Sbjct: 96 EACVIQGVGVTETPL 110
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 31 WNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKGVICVDNWRG 75
W K +++ + +YN S P L +QI D++ + C D +RG
Sbjct: 11 WRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRG 54
>pdb|3ELD|A Chain A, Wesselsbron Methyltransferase In Complex With Sinefungin
pdb|3ELU|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
pdb|3ELW|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
And Gpppg
pdb|3ELY|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adohcy
pdb|3EMB|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
And 7megpppg
pdb|3EMD|A Chain A, Wesselsbron Virus Methyltransferase In Complex With
Sinefungin And 7megpppa
Length = 300
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 240 VGSESRSYLLECDGCLSVIEISDEWME-------TWVLKDYYRDEWHSVDKVSLRCIKGM 292
+G S + L+E D + V+E + W VL Y+ D ++++ LR G+
Sbjct: 155 IGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGI 214
Query: 293 VPSIFPISQTREYVFLATHKQVLVYHRN 320
V F + T E +++ + + + N
Sbjct: 215 VRVPFSRNSTHEMYYISGARNNITHMVN 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,221,744
Number of Sequences: 62578
Number of extensions: 465204
Number of successful extensions: 1289
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1272
Number of HSP's gapped (non-prelim): 24
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)