Query 018593
Match_columns 353
No_of_seqs 154 out of 1425
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 4.7E-32 1E-36 229.5 25.0 215 91-322 1-230 (230)
2 PHA02713 hypothetical protein; 99.7 4.9E-15 1.1E-19 140.4 22.7 210 91-332 299-545 (557)
3 KOG4441 Proteins containing BT 99.7 1.9E-14 4E-19 136.0 24.6 207 90-330 327-556 (571)
4 KOG4441 Proteins containing BT 99.6 2.1E-14 4.5E-19 135.7 20.0 197 107-333 301-512 (571)
5 PHA02713 hypothetical protein; 99.6 5E-14 1.1E-18 133.6 20.4 194 108-332 273-501 (557)
6 PLN03215 ascorbic acid mannose 99.6 9.5E-13 2.1E-17 115.6 26.6 303 2-327 5-353 (373)
7 PHA02790 Kelch-like protein; P 99.6 4E-13 8.7E-18 125.6 21.7 181 107-327 287-477 (480)
8 PF07734 FBA_1: F-box associat 99.5 8.9E-13 1.9E-17 105.1 16.2 141 204-348 1-164 (164)
9 PHA03098 kelch-like protein; P 99.5 3E-12 6.4E-17 122.1 21.6 193 107-331 311-522 (534)
10 TIGR03547 muta_rot_YjhT mutatr 99.5 7.6E-12 1.6E-16 112.7 22.4 219 93-331 15-309 (346)
11 PF08268 FBA_3: F-box associat 99.5 9.6E-13 2.1E-17 100.6 13.3 104 204-308 1-118 (129)
12 PRK14131 N-acetylneuraminic ac 99.4 1.5E-10 3.3E-15 105.2 23.8 219 92-331 35-331 (376)
13 PLN02153 epithiospecifier prot 99.4 1.9E-10 4E-15 103.4 23.5 203 107-329 50-293 (341)
14 PLN02193 nitrile-specifier pro 99.4 1.8E-10 4E-15 107.5 22.0 205 107-331 193-421 (470)
15 TIGR03548 mutarot_permut cycli 99.3 7E-10 1.5E-14 98.9 22.4 197 108-330 40-289 (323)
16 PLN02193 nitrile-specifier pro 99.3 8.3E-10 1.8E-14 103.1 23.1 202 108-330 138-361 (470)
17 PLN02153 epithiospecifier prot 99.3 8.5E-10 1.8E-14 99.1 21.4 151 172-330 50-235 (341)
18 PHA02790 Kelch-like protein; P 99.3 1.6E-10 3.4E-15 108.3 17.0 143 171-331 286-434 (480)
19 PHA03098 kelch-like protein; P 99.3 3E-10 6.5E-15 108.4 18.6 192 108-331 265-475 (534)
20 PRK14131 N-acetylneuraminic ac 99.2 4.5E-09 9.7E-14 95.6 20.0 146 172-326 189-374 (376)
21 PF12937 F-box-like: F-box-lik 99.0 1.7E-10 3.6E-15 71.1 3.5 42 1-42 1-42 (47)
22 TIGR03548 mutarot_permut cycli 99.0 7.2E-08 1.6E-12 86.0 21.5 132 107-260 88-231 (323)
23 TIGR03547 muta_rot_YjhT mutatr 99.0 4.8E-08 1E-12 88.1 18.7 160 153-331 18-238 (346)
24 PF00646 F-box: F-box domain; 98.9 7.8E-10 1.7E-14 68.5 2.1 43 2-44 4-46 (48)
25 smart00256 FBOX A Receptor for 98.8 3E-09 6.4E-14 63.5 2.6 39 4-42 1-39 (41)
26 KOG4693 Uncharacterized conser 98.6 6.7E-06 1.4E-10 67.9 15.9 204 104-328 41-284 (392)
27 KOG0379 Kelch repeat-containin 98.4 2.4E-05 5.1E-10 73.4 18.3 162 173-342 89-271 (482)
28 KOG1230 Protein containing rep 98.3 4E-05 8.7E-10 67.2 16.1 203 106-327 97-347 (521)
29 KOG0379 Kelch repeat-containin 98.3 6.8E-05 1.5E-09 70.3 18.3 201 108-331 89-312 (482)
30 KOG4693 Uncharacterized conser 98.3 1.5E-05 3.3E-10 65.8 11.6 110 171-286 156-288 (392)
31 KOG1230 Protein containing rep 98.2 4.6E-05 9.9E-10 66.9 12.9 150 173-328 99-288 (521)
32 KOG0281 Beta-TrCP (transducin 98.1 0.00012 2.7E-09 62.7 12.7 42 2-43 76-121 (499)
33 KOG2120 SCF ubiquitin ligase, 97.6 3.7E-05 8E-10 65.1 2.4 39 2-40 99-137 (419)
34 PF13964 Kelch_6: Kelch motif 97.2 0.0008 1.7E-08 41.6 4.8 38 201-238 4-48 (50)
35 KOG4152 Host cell transcriptio 97.2 0.0059 1.3E-07 55.5 11.6 157 107-282 57-246 (830)
36 KOG2997 F-box protein FBX9 [Ge 97.0 0.00044 9.4E-09 58.9 2.2 45 1-45 107-156 (366)
37 PF08450 SGL: SMP-30/Gluconola 96.9 0.22 4.7E-06 42.4 22.4 202 91-331 7-223 (246)
38 PF01344 Kelch_1: Kelch motif; 96.8 0.0027 5.8E-08 38.6 4.0 37 201-237 4-47 (47)
39 PF07250 Glyoxal_oxid_N: Glyox 96.7 0.046 1E-06 46.1 12.0 153 171-332 45-210 (243)
40 COG3055 Uncharacterized protei 96.5 0.039 8.4E-07 48.2 10.8 110 172-287 113-268 (381)
41 KOG0274 Cdc4 and related F-box 96.1 1.1 2.4E-05 42.8 19.0 42 1-42 108-149 (537)
42 PF07646 Kelch_2: Kelch motif; 96.0 0.02 4.3E-07 35.1 4.7 35 201-235 4-46 (49)
43 COG4257 Vgb Streptogramin lyas 95.7 0.29 6.3E-06 41.5 11.7 141 90-260 194-336 (353)
44 PF01344 Kelch_1: Kelch motif; 95.5 0.052 1.1E-06 32.7 5.2 32 299-330 8-46 (47)
45 PF13360 PQQ_2: PQQ-like domai 95.4 1.4 3E-05 37.0 17.9 188 94-326 35-236 (238)
46 PF07893 DUF1668: Protein of u 95.2 0.72 1.6E-05 41.5 13.6 117 207-328 75-215 (342)
47 PRK11138 outer membrane biogen 95.1 2.6 5.6E-05 38.7 20.8 129 202-348 250-383 (394)
48 PF13964 Kelch_6: Kelch motif 95.1 0.053 1.1E-06 33.3 4.4 24 105-128 26-49 (50)
49 PF02191 OLF: Olfactomedin-lik 94.9 1.7 3.7E-05 37.1 14.3 121 199-327 69-210 (250)
50 PF13418 Kelch_4: Galactose ox 94.9 0.055 1.2E-06 33.0 4.0 37 201-237 4-48 (49)
51 KOG0310 Conserved WD40 repeat- 94.7 1.2 2.6E-05 40.6 13.2 141 171-330 47-193 (487)
52 PF10282 Lactonase: Lactonase, 94.5 2.1 4.4E-05 38.6 14.8 128 208-340 154-297 (345)
53 smart00284 OLF Olfactomedin-li 94.4 1.9 4E-05 36.7 13.2 74 199-272 74-160 (255)
54 PF08450 SGL: SMP-30/Gluconola 94.1 2.3 5.1E-05 36.0 13.8 113 204-328 5-130 (246)
55 smart00612 Kelch Kelch domain. 94.0 0.15 3.3E-06 30.4 4.6 31 219-252 15-46 (47)
56 PF10282 Lactonase: Lactonase, 93.4 5.8 0.00013 35.7 21.2 152 171-329 165-333 (345)
57 PF13360 PQQ_2: PQQ-like domai 92.9 4.9 0.00011 33.6 17.8 141 173-331 4-151 (238)
58 PF13418 Kelch_4: Galactose ox 92.8 0.17 3.8E-06 30.7 3.4 28 301-328 11-45 (49)
59 smart00612 Kelch Kelch domain. 92.7 0.25 5.3E-06 29.4 4.0 20 171-193 14-33 (47)
60 KOG4152 Host cell transcriptio 92.3 0.18 4E-06 46.2 4.2 96 183-284 18-126 (830)
61 PF07893 DUF1668: Protein of u 92.0 5.5 0.00012 35.8 13.3 117 105-240 84-223 (342)
62 PF07762 DUF1618: Protein of u 91.9 2.4 5.1E-05 32.1 9.4 68 220-287 7-99 (131)
63 PF13415 Kelch_3: Galactose ox 91.5 0.69 1.5E-05 28.1 5.0 18 312-329 19-36 (49)
64 PLN02772 guanylate kinase 91.4 1.4 3E-05 40.0 8.7 70 201-272 27-107 (398)
65 KOG0316 Conserved WD40 repeat- 91.2 7.9 0.00017 32.3 16.3 187 95-327 28-220 (307)
66 PRK04043 tolB translocation pr 90.9 13 0.00029 34.5 23.9 202 98-339 203-419 (419)
67 PF07646 Kelch_2: Kelch motif; 90.9 0.5 1.1E-05 28.7 3.9 31 298-328 7-46 (49)
68 PF13415 Kelch_3: Galactose ox 90.7 1.2 2.6E-05 27.0 5.5 22 219-240 19-41 (49)
69 KOG2055 WD40 repeat protein [G 90.0 7.4 0.00016 35.6 11.7 117 206-331 266-385 (514)
70 KOG2437 Muskelin [Signal trans 89.8 0.46 1E-05 43.6 4.2 127 197-327 259-419 (723)
71 TIGR03300 assembly_YfgL outer 89.5 16 0.00035 33.2 21.4 112 203-331 236-349 (377)
72 TIGR01640 F_box_assoc_1 F-box 88.7 13 0.00028 31.1 13.3 112 206-326 3-132 (230)
73 COG4257 Vgb Streptogramin lyas 88.7 15 0.00032 31.6 17.3 222 92-331 69-316 (353)
74 COG3386 Gluconolactonase [Carb 88.7 14 0.0003 32.7 12.6 111 209-329 37-160 (307)
75 COG1520 FOG: WD40-like repeat 88.5 19 0.00042 32.7 14.0 142 172-331 35-182 (370)
76 COG2706 3-carboxymuconate cycl 88.4 17 0.00037 32.2 15.7 129 208-341 155-297 (346)
77 COG3055 Uncharacterized protei 88.2 12 0.00025 33.3 11.4 128 172-311 196-358 (381)
78 KOG0299 U3 snoRNP-associated p 88.0 21 0.00046 32.7 15.2 203 88-312 206-446 (479)
79 PRK11138 outer membrane biogen 86.3 27 0.00058 32.1 20.5 136 172-324 170-316 (394)
80 TIGR03300 assembly_YfgL outer 86.2 26 0.00056 31.8 22.3 54 172-234 115-172 (377)
81 PF05096 Glu_cyclase_2: Glutam 84.9 24 0.00052 30.3 16.3 112 207-332 54-169 (264)
82 PRK11028 6-phosphogluconolacto 84.6 28 0.00062 30.8 22.6 128 208-341 185-326 (330)
83 KOG4341 F-box protein containi 83.9 0.68 1.5E-05 41.8 1.9 36 3-38 74-109 (483)
84 PRK04792 tolB translocation pr 83.5 40 0.00086 31.7 24.0 198 105-340 240-445 (448)
85 KOG0289 mRNA splicing factor [ 82.2 40 0.00088 30.9 17.5 120 204-333 354-475 (506)
86 KOG2445 Nuclear pore complex c 81.5 36 0.00077 29.8 13.0 82 251-332 123-221 (361)
87 COG4946 Uncharacterized protei 81.4 46 0.001 31.0 13.4 34 298-331 408-442 (668)
88 PRK00178 tolB translocation pr 80.3 50 0.0011 30.7 24.0 197 106-340 222-426 (430)
89 PF13013 F-box-like_2: F-box-l 80.0 1.4 3E-05 32.1 2.1 28 2-29 23-50 (109)
90 KOG1274 WD40 repeat protein [G 79.7 73 0.0016 32.2 17.3 122 204-331 103-227 (933)
91 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.4 54 0.0012 31.6 13.1 118 202-328 63-197 (527)
92 TIGR03074 PQQ_membr_DH membran 78.5 79 0.0017 32.0 14.2 32 202-234 188-221 (764)
93 KOG0286 G-protein beta subunit 78.5 44 0.00095 29.0 17.2 199 95-328 66-267 (343)
94 KOG0294 WD40 repeat-containing 76.6 53 0.0011 28.9 11.7 120 204-336 48-173 (362)
95 TIGR03032 conserved hypothetic 76.3 55 0.0012 28.9 11.6 56 199-260 203-259 (335)
96 PF13570 PQQ_3: PQQ-like domai 74.6 8.9 0.00019 21.9 4.2 25 203-228 16-40 (40)
97 PRK05137 tolB translocation pr 71.7 87 0.0019 29.2 23.7 197 105-340 224-431 (435)
98 PF02897 Peptidase_S9_N: Proly 71.4 85 0.0018 28.9 20.3 117 206-328 285-412 (414)
99 PF07433 DUF1513: Protein of u 70.9 74 0.0016 28.0 21.1 206 104-332 25-259 (305)
100 KOG0645 WD40 repeat protein [G 69.7 62 0.0013 27.8 9.3 76 253-332 27-103 (312)
101 KOG0293 WD40 repeat-containing 67.2 1E+02 0.0022 28.2 13.7 110 206-327 363-477 (519)
102 PF07569 Hira: TUP1-like enhan 66.2 45 0.00097 27.9 8.1 80 245-329 14-104 (219)
103 smart00564 PQQ beta-propeller 65.4 18 0.00039 19.3 3.9 25 205-230 3-27 (33)
104 KOG2437 Muskelin [Signal trans 63.4 20 0.00044 33.5 5.8 87 172-260 288-393 (723)
105 PF05096 Glu_cyclase_2: Glutam 62.8 1E+02 0.0022 26.6 15.4 144 170-332 66-215 (264)
106 COG2706 3-carboxymuconate cycl 62.2 1.2E+02 0.0025 27.2 21.9 153 170-329 165-332 (346)
107 PLN02919 haloacid dehalogenase 61.4 2.3E+02 0.0049 30.2 24.9 113 208-324 750-892 (1057)
108 PF12458 DUF3686: ATPase invol 61.3 1.2E+02 0.0025 28.1 10.0 34 95-128 238-274 (448)
109 PF03088 Str_synth: Strictosid 59.2 34 0.00075 23.9 5.2 16 219-234 37-52 (89)
110 TIGR03866 PQQ_ABC_repeats PQQ- 58.6 1.2E+02 0.0025 25.9 23.0 182 104-327 50-244 (300)
111 KOG1310 WD40 repeat protein [G 58.2 66 0.0014 30.6 8.1 113 93-228 59-179 (758)
112 PF07250 Glyoxal_oxid_N: Glyox 57.0 1.2E+02 0.0027 25.8 10.1 90 106-218 45-138 (243)
113 KOG0289 mRNA splicing factor [ 56.8 41 0.0009 30.8 6.5 63 253-323 359-422 (506)
114 PF03088 Str_synth: Strictosid 56.3 38 0.00082 23.7 5.0 16 313-328 38-53 (89)
115 TIGR02800 propeller_TolB tol-p 55.4 1.7E+02 0.0036 26.8 23.7 183 106-327 213-404 (417)
116 KOG0647 mRNA export protein (c 54.8 1.5E+02 0.0032 26.0 10.3 102 208-322 83-186 (347)
117 KOG0265 U5 snRNP-specific prot 53.3 75 0.0016 27.7 7.2 68 252-326 58-126 (338)
118 COG0823 TolB Periplasmic compo 52.9 1.5E+02 0.0033 27.7 9.8 109 220-339 219-333 (425)
119 KOG2055 WD40 repeat protein [G 51.9 2.1E+02 0.0044 26.8 16.9 146 97-272 272-418 (514)
120 PF12768 Rax2: Cortical protei 51.8 1.6E+02 0.0036 25.6 11.1 66 171-236 15-81 (281)
121 cd01207 Ena-Vasp Enabled-VASP- 51.8 81 0.0018 23.1 6.3 42 107-158 9-50 (111)
122 PF15408 PH_7: Pleckstrin homo 51.7 7.9 0.00017 26.4 1.0 23 19-41 77-99 (104)
123 cd01206 Homer Homer type EVH1 51.7 43 0.00094 24.3 4.7 41 106-159 10-51 (111)
124 KOG0319 WD40-repeat-containing 49.9 2.6E+02 0.0056 27.8 10.8 63 220-285 41-107 (775)
125 PF13859 BNR_3: BNR repeat-lik 49.9 93 0.002 27.6 7.7 95 183-281 101-212 (310)
126 KOG0315 G-protein beta subunit 49.2 1.7E+02 0.0037 25.0 20.5 108 210-322 138-247 (311)
127 KOG0295 WD40 repeat-containing 49.2 1E+02 0.0022 27.7 7.5 69 253-329 304-373 (406)
128 PF13854 Kelch_5: Kelch motif 48.8 48 0.001 19.1 4.0 28 244-271 6-38 (42)
129 KOG0321 WD40 repeat-containing 48.7 1E+02 0.0022 30.0 7.8 109 210-327 66-182 (720)
130 KOG0647 mRNA export protein (c 48.2 1.4E+02 0.0031 26.2 8.1 72 252-329 39-111 (347)
131 KOG0281 Beta-TrCP (transducin 47.3 1.8E+02 0.0038 26.2 8.6 139 94-272 197-349 (499)
132 PF02239 Cytochrom_D1: Cytochr 46.8 2.3E+02 0.005 25.9 11.6 107 208-326 5-114 (369)
133 KOG2502 Tub family proteins [G 45.8 14 0.00031 32.7 1.9 35 2-36 46-88 (355)
134 KOG0649 WD40 repeat protein [G 45.0 2E+02 0.0042 24.6 11.9 114 209-332 127-247 (325)
135 PF06433 Me-amine-dh_H: Methyl 44.3 2.4E+02 0.0052 25.4 22.1 111 208-326 195-326 (342)
136 PF12217 End_beta_propel: Cata 44.2 1.3E+02 0.0027 25.9 7.0 56 204-260 196-257 (367)
137 KOG2048 WD40 repeat protein [G 44.0 2.5E+02 0.0055 27.5 9.7 101 222-327 410-512 (691)
138 PRK04922 tolB translocation pr 42.9 2.8E+02 0.0061 25.8 23.9 196 106-340 227-431 (433)
139 KOG0292 Vesicle coat complex C 42.3 4.1E+02 0.0088 27.4 13.0 103 204-333 255-361 (1202)
140 KOG3926 F-box proteins [Amino 40.9 29 0.00063 29.7 2.9 36 2-37 203-239 (332)
141 KOG1963 WD40 repeat protein [G 39.9 4.1E+02 0.009 26.9 21.6 103 222-330 435-549 (792)
142 KOG0319 WD40-repeat-containing 39.5 4E+02 0.0087 26.6 13.2 192 90-325 25-227 (775)
143 PLN00181 protein SPA1-RELATED; 39.4 4.3E+02 0.0094 27.0 23.7 110 209-323 630-741 (793)
144 PRK03629 tolB translocation pr 39.2 3.2E+02 0.007 25.4 24.1 198 105-340 221-426 (429)
145 KOG0639 Transducin-like enhanc 39.2 1.1E+02 0.0024 28.9 6.4 68 262-332 439-507 (705)
146 PF01011 PQQ: PQQ enzyme repea 38.4 63 0.0014 18.1 3.3 26 306-331 3-29 (38)
147 PRK13684 Ycf48-like protein; P 38.2 3E+02 0.0064 24.7 12.2 109 211-328 185-296 (334)
148 KOG0639 Transducin-like enhanc 37.8 1.2E+02 0.0026 28.6 6.5 66 206-272 474-540 (705)
149 PF14870 PSII_BNR: Photosynthe 37.4 2.9E+02 0.0064 24.4 13.9 143 175-331 125-272 (302)
150 KOG0285 Pleiotropic regulator 37.1 1.7E+02 0.0037 26.4 7.0 66 253-326 162-229 (460)
151 PLN02772 guanylate kinase 37.1 1.5E+02 0.0033 27.2 7.1 46 171-218 50-96 (398)
152 KOG0300 WD40 repeat-containing 36.7 2.1E+02 0.0045 25.3 7.4 61 261-329 376-437 (481)
153 COG4946 Uncharacterized protei 36.2 3.8E+02 0.0082 25.3 18.8 48 219-272 382-430 (668)
154 PRK11028 6-phosphogluconolacto 35.7 3.1E+02 0.0067 24.2 22.0 118 208-330 136-270 (330)
155 COG3386 Gluconolactonase [Carb 35.7 3.1E+02 0.0068 24.3 19.5 200 94-331 35-253 (307)
156 KOG3545 Olfactomedin and relat 35.7 2.8E+02 0.006 23.6 11.0 72 201-272 70-154 (249)
157 KOG0278 Serine/threonine kinas 35.6 2.8E+02 0.0061 23.8 7.8 69 210-281 237-308 (334)
158 PF14583 Pectate_lyase22: Olig 34.4 3.7E+02 0.008 24.7 15.1 104 219-331 168-283 (386)
159 PF00780 CNH: CNH domain; Int 34.4 2.9E+02 0.0063 23.5 9.0 75 251-332 102-177 (275)
160 PF06058 DCP1: Dcp1-like decap 34.1 64 0.0014 24.1 3.6 28 304-332 21-48 (122)
161 TIGR02658 TTQ_MADH_Hv methylam 33.7 3.7E+02 0.0079 24.4 24.8 114 205-327 202-337 (352)
162 KOG0266 WD40 repeat-containing 33.6 4.1E+02 0.0089 25.0 11.8 108 208-325 214-323 (456)
163 TIGR02800 propeller_TolB tol-p 33.6 3.8E+02 0.0081 24.5 22.7 142 171-328 213-362 (417)
164 PTZ00334 trans-sialidase; Prov 33.5 2E+02 0.0043 29.2 7.7 74 204-281 265-349 (780)
165 PRK04043 tolB translocation pr 33.3 4E+02 0.0087 24.8 13.3 99 219-328 213-317 (419)
166 KOG0283 WD40 repeat-containing 33.2 1E+02 0.0022 30.5 5.6 62 261-331 430-492 (712)
167 PF14781 BBS2_N: Ciliary BBSom 32.6 56 0.0012 24.8 3.1 24 300-323 61-84 (136)
168 PLN02919 haloacid dehalogenase 32.1 6.6E+02 0.014 26.9 25.9 226 90-329 574-842 (1057)
169 PF06881 Elongin_A: RNA polyme 32.0 45 0.00097 24.3 2.5 28 1-28 4-31 (109)
170 KOG4547 WD40 repeat-containing 31.4 4.8E+02 0.01 25.1 11.5 100 215-327 76-179 (541)
171 cd00216 PQQ_DH Dehydrogenases 31.0 4.7E+02 0.01 24.9 10.1 53 204-260 402-456 (488)
172 KOG1240 Protein kinase contain 30.9 2.4E+02 0.0052 30.0 7.8 62 261-328 1171-1233(1431)
173 KOG2321 WD40 repeat protein [G 30.9 5.1E+02 0.011 25.2 10.3 107 211-323 148-261 (703)
174 PF02393 US22: US22 like; Int 30.9 83 0.0018 23.2 3.9 26 303-328 82-107 (125)
175 KOG0640 mRNA cleavage stimulat 30.5 3.9E+02 0.0084 23.7 10.7 138 208-352 272-414 (430)
176 PF07370 DUF1489: Protein of u 28.9 44 0.00096 25.4 2.0 25 204-228 43-71 (137)
177 PF13088 BNR_2: BNR repeat-lik 28.2 3.7E+02 0.0081 22.8 12.9 124 172-304 133-272 (275)
178 KOG1539 WD repeat protein [Gen 28.1 6.6E+02 0.014 25.6 12.3 119 209-331 460-617 (910)
179 KOG0645 WD40 repeat protein [G 26.4 4.3E+02 0.0094 23.0 19.6 150 171-333 36-194 (312)
180 PF08268 FBA_3: F-box associat 26.3 2.7E+02 0.0059 20.6 9.3 67 171-239 19-94 (129)
181 KOG4378 Nuclear protein COP1 [ 25.7 1.7E+02 0.0037 27.6 5.4 59 260-326 184-245 (673)
182 PF03178 CPSF_A: CPSF A subuni 24.5 4.9E+02 0.011 22.9 15.0 108 220-346 63-181 (321)
183 cd00260 Sialidase Sialidases o 23.6 5.3E+02 0.011 23.0 17.0 80 204-285 151-242 (351)
184 TIGR03866 PQQ_ABC_repeats PQQ- 23.5 4.5E+02 0.0097 22.1 23.0 135 171-325 52-192 (300)
185 smart00135 LY Low-density lipo 23.0 1.5E+02 0.0032 16.4 3.5 22 207-228 19-40 (43)
186 PF14157 YmzC: YmzC-like prote 22.6 2.2E+02 0.0049 18.3 4.3 15 314-328 43-57 (63)
187 KOG1897 Damage-specific DNA bi 22.6 9.1E+02 0.02 25.4 20.3 106 219-342 807-918 (1096)
188 PTZ00421 coronin; Provisional 22.4 6.9E+02 0.015 23.9 23.2 113 208-328 179-298 (493)
189 PF10657 RC-P840_PscD: Photosy 21.9 3.3E+02 0.0072 20.2 5.2 40 219-258 100-139 (144)
190 KOG0640 mRNA cleavage stimulat 21.8 5.7E+02 0.012 22.7 9.7 114 208-328 227-343 (430)
191 KOG3669 Uncharacterized conser 21.5 7.7E+02 0.017 24.1 12.2 61 176-240 212-274 (705)
192 PLN03215 ascorbic acid mannose 21.3 3.8E+02 0.0083 24.5 6.8 61 171-234 283-353 (373)
193 cd00216 PQQ_DH Dehydrogenases 21.2 7.2E+02 0.016 23.6 16.3 156 173-330 72-274 (488)
194 KOG3881 Uncharacterized conser 21.1 2E+02 0.0044 26.1 4.8 54 298-352 254-308 (412)
195 PRK10115 protease 2; Provision 21.0 8.6E+02 0.019 24.5 20.0 116 206-329 277-403 (686)
196 PLN00033 photosystem II stabil 20.8 6.8E+02 0.015 23.2 12.2 113 208-328 249-364 (398)
197 PF15232 DUF4585: Domain of un 20.7 2E+02 0.0043 19.3 3.6 28 301-328 15-45 (75)
198 KOG0292 Vesicle coat complex C 20.3 2.8E+02 0.0061 28.5 6.0 62 261-328 226-288 (1202)
199 PTZ00421 coronin; Provisional 20.0 7.8E+02 0.017 23.6 13.0 63 254-324 139-202 (493)
200 KOG1036 Mitotic spindle checkp 20.0 6.2E+02 0.013 22.4 11.5 91 218-324 74-167 (323)
201 KOG0266 WD40 repeat-containing 20.0 7.4E+02 0.016 23.3 18.9 111 207-328 256-372 (456)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=4.7e-32 Score=229.52 Aligned_cols=215 Identities=22% Similarity=0.331 Sum_probs=159.3
Q ss_pred eeecCeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCC
Q 018593 91 RASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDG 170 (353)
Q Consensus 91 ~~s~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 170 (353)
+++||||+|+.. ...++||||+||+++.||+++.+. .......+ ++|+|+.++.|||+++...+ . ...
T Consensus 1 ~~sCnGLlc~~~---~~~~~V~NP~T~~~~~LP~~~~~~----~~~~~~~~-~~G~d~~~~~YKVv~~~~~~--~--~~~ 68 (230)
T TIGR01640 1 VVPCDGLICFSY---GKRLVVWNPSTGQSRWLPTPKSRR----SNKESDTY-FLGYDPIEKQYKVLCFSDRS--G--NRN 68 (230)
T ss_pred CcccceEEEEec---CCcEEEECCCCCCEEecCCCCCcc----cccccceE-EEeecccCCcEEEEEEEeec--C--CCC
Confidence 478999999884 278999999999999999876531 11111123 89999999999999996422 1 113
Q ss_pred cceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC-----CEEEEEECCCceEE-EeeCCCCCCCC-
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----SFILALDLEGDVWR-KISLPDKVGSE- 243 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----~~i~~~D~~~~~~~-~~~~P~~~~~~- 243 (353)
...++||++++++||.+. .. +........+|++||.+||++... ..|++||+.+|+|+ .+++|......
T Consensus 69 ~~~~~Vys~~~~~Wr~~~---~~-~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~ 144 (230)
T TIGR01640 69 QSEHQVYTLGSNSWRTIE---CS-PPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSV 144 (230)
T ss_pred CccEEEEEeCCCCccccc---cC-CCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccc
Confidence 568899999999999994 22 111122233999999999998643 27999999999999 48888755321
Q ss_pred CceeEEEECCEEEEEEe--cCCeEEEEEEecCCCCCeEEEEeeccc---cccCccceeeeeecCCcEEEEEeC--Cc-EE
Q 018593 244 SRSYLLECDGCLSVIEI--SDEWMETWVLKDYYRDEWHSVDKVSLR---CIKGMVPSIFPISQTREYVFLATH--KQ-VL 315 (353)
Q Consensus 244 ~~~~l~~~~g~L~~v~~--~~~~~~vw~l~~~~~~~W~~~~~i~~~---~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~ 315 (353)
....|++++|+|+++.. ....++||+|+++++.+|++..+++.+ +......+. ++..+|++++.... +. ++
T Consensus 145 ~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~-~~~~~g~I~~~~~~~~~~~~~ 223 (230)
T TIGR01640 145 DYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLS-GFTDKGEIVLCCEDENPFYIF 223 (230)
T ss_pred cceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEe-EEeeCCEEEEEeCCCCceEEE
Confidence 35689999999999987 335699999998887779999999852 222223466 77888996665543 34 99
Q ss_pred EEECCCC
Q 018593 316 VYHRNGR 322 (353)
Q Consensus 316 ~yd~~~~ 322 (353)
.||+++|
T Consensus 224 ~y~~~~~ 230 (230)
T TIGR01640 224 YYNVGEN 230 (230)
T ss_pred EEeccCC
Confidence 9999986
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.69 E-value=4.9e-15 Score=140.36 Aligned_cols=210 Identities=9% Similarity=0.102 Sum_probs=142.5
Q ss_pred eeecCeeEEeeecC-----CCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccC
Q 018593 91 RASCNGLLCCSSIP-----EMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFG 165 (353)
Q Consensus 91 ~~s~~Gll~~~~~~-----~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 165 (353)
++..+|.+++.+.. ....+..+||.+++|..+|+++.+ ...... ... +-+|+++|.. .
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~----R~~~~~-----~~~-----~g~IYviGG~---~ 361 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN----RCRFSL-----AVI-----DDTIYAIGGQ---N 361 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch----hhceeE-----EEE-----CCEEEEECCc---C
Confidence 34456666655421 124688999999999999999865 211111 111 2278888631 1
Q ss_pred CCCCCcceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC-----------------------CEEE
Q 018593 166 HRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----------------------SFIL 222 (353)
Q Consensus 166 ~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----------------------~~i~ 222 (353)
.......+++||+.+++|... +++ |. .+.....+.++|+||.+++.. ..+.
T Consensus 362 -~~~~~~sve~Ydp~~~~W~~~---~~m-p~-~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 435 (557)
T PHA02713 362 -GTNVERTIECYTMGDDKWKML---PDM-PI-ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVI 435 (557)
T ss_pred -CCCCCceEEEEECCCCeEEEC---CCC-Cc-ccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEE
Confidence 011245799999999999998 665 32 344455788999999998742 2589
Q ss_pred EEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEe-cC-Ce-E-EEEEEecCCC-CCeEEEEeeccccccCcccee
Q 018593 223 ALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEI-SD-EW-M-ETWVLKDYYR-DEWHSVDKVSLRCIKGMVPSI 296 (353)
Q Consensus 223 ~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~-~~-~~-~-~vw~l~~~~~-~~W~~~~~i~~~~~~~~~~~~ 296 (353)
+||+.+++|+.+ ++|... ....+++.+|+||++++ .+ .. . .+... +.++ ++|+.+..|+.+.....
T Consensus 436 ~YDP~td~W~~v~~m~~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Y-dp~~~~~W~~~~~m~~~r~~~~---- 507 (557)
T PHA02713 436 RYDTVNNIWETLPNFWTGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRY-NTNTYNGWELITTTESRLSALH---- 507 (557)
T ss_pred EECCCCCeEeecCCCCccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEe-cCCCCCCeeEccccCcccccce----
Confidence 999999999988 666655 55678999999999987 22 11 1 12222 4444 58999998887543322
Q ss_pred eeeecCCcEEEEEeCCc---EEEEECCCCeEEEeeeecc
Q 018593 297 FPISQTREYVFLATHKQ---VLVYHRNGRLWKEMYSVKY 332 (353)
Q Consensus 297 ~~~~~~~~~v~~~~~~~---~~~yd~~~~~~~~v~~~~~ 332 (353)
.+..+|.++++++... +-.||++|++|+.++..+.
T Consensus 508 -~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 508 -TILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred -eEEECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 2233777677766544 8899999999999977653
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.68 E-value=1.9e-14 Score=136.03 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=148.6
Q ss_pred EeeecCeeEEeeecC-----CCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeeccc
Q 018593 90 VRASCNGLLCCSSIP-----EMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAF 164 (353)
Q Consensus 90 ~~~s~~Gll~~~~~~-----~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~ 164 (353)
-++..+|.|+..+.. ..+.+..|||.+++|..+|++... +...+... -..+++++|...
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~----R~~~~v~~----------l~g~iYavGG~d-- 390 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK----RSDFGVAV----------LDGKLYAVGGFD-- 390 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc----cccceeEE----------ECCEEEEEeccc--
Confidence 345567777666432 235789999999999999999876 22222221 134788886321
Q ss_pred CCCCCCcceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC------CEEEEEECCCceEEEe-eCC
Q 018593 165 GHRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC------SFILALDLEGDVWRKI-SLP 237 (353)
Q Consensus 165 ~~~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~------~~i~~~D~~~~~~~~~-~~P 237 (353)
.......+|.||+.+++|... +++ +. .+....++.++|.||.+++.. ..+.+||+.+++|+.+ +|+
T Consensus 391 --g~~~l~svE~YDp~~~~W~~v---a~m-~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~ 463 (571)
T KOG4441|consen 391 --GEKSLNSVECYDPVTNKWTPV---APM-LT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN 463 (571)
T ss_pred --cccccccEEEecCCCCccccc---CCC-Cc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc
Confidence 123356899999999999999 766 44 677777999999999999954 6899999999999998 777
Q ss_pred CCCCCCCceeEEEECCEEEEEEe-cC----CeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCC
Q 018593 238 DKVGSESRSYLLECDGCLSVIEI-SD----EWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHK 312 (353)
Q Consensus 238 ~~~~~~~~~~l~~~~g~L~~v~~-~~----~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 312 (353)
..+ ....+++.+|+||++++ ++ ..++.+ +..+++|+.+..|..+..... ++..++.++++++..
T Consensus 464 ~~R---~~~g~a~~~~~iYvvGG~~~~~~~~~VE~y---dp~~~~W~~v~~m~~~rs~~g-----~~~~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 464 TRR---SGFGVAVLNGKIYVVGGFDGTSALSSVERY---DPETNQWTMVAPMTSPRSAVG-----VVVLGGKLYAVGGFD 532 (571)
T ss_pred ccc---ccceEEEECCEEEEECCccCCCccceEEEE---cCCCCceeEcccCcccccccc-----EEEECCEEEEEeccc
Confidence 766 56779999999999998 32 122233 444489999987876533322 223366655555432
Q ss_pred ------cEEEEECCCCeEEEeeee
Q 018593 313 ------QVLVYHRNGRLWKEMYSV 330 (353)
Q Consensus 313 ------~~~~yd~~~~~~~~v~~~ 330 (353)
.+-.||+++++|+.+..+
T Consensus 533 ~~~~l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 533 GNNNLNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred CccccceeEEcCCCCCceeeCCCc
Confidence 299999999999999653
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.64 E-value=2.1e-14 Score=135.68 Aligned_cols=197 Identities=15% Similarity=0.136 Sum_probs=143.0
Q ss_pred ceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEEE
Q 018593 107 GVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRK 186 (353)
Q Consensus 107 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~ 186 (353)
..+-.+||.+++|..+.+++.+ ......+.+ +-+|+++|.... .......+++||+.+++|..
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~----r~~~~~~~~----------~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSP----RCRVGVAVL----------NGKLYVVGGYDS---GSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcc----cccccEEEE----------CCEEEEEccccC---CCcccceEEEecCCCCceec
Confidence 4677899999999999999876 222222211 127888863211 12335789999999999999
Q ss_pred eeeccccceeeeeecCceEEEcceEEeeecCC-----CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEe
Q 018593 187 FVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEI 260 (353)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~ 260 (353)
. ++| ...+.....+.++|.||.+++.. ..+..||+.+++|+.+ +++... .....++.+|+||++++
T Consensus 364 ~---a~M--~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r---~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 364 V---APM--NTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR---SGHGVAVLGGKLYIIGG 435 (571)
T ss_pred c---CCc--cCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce---eeeEEEEECCEEEEEcC
Confidence 8 666 55577777999999999999876 6799999999999998 677755 57788899999999998
Q ss_pred -cCCeEEEEEEe--cCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc------EEEEECCCCeEEEeeeec
Q 018593 261 -SDEWMETWVLK--DYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ------VLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 261 -~~~~~~vw~l~--~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~yd~~~~~~~~v~~~~ 331 (353)
.+..-.+=..+ +..++.|..+..|+.+....... .-++.++.+++... +-.||+++++|..+..++
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-----~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-----VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEE-----EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 32221222222 44459999999999854332222 23777666665443 889999999999998776
Q ss_pred cC
Q 018593 332 YG 333 (353)
Q Consensus 332 ~~ 333 (353)
..
T Consensus 511 ~~ 512 (571)
T KOG4441|consen 511 SP 512 (571)
T ss_pred cc
Confidence 43
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.62 E-value=5e-14 Score=133.56 Aligned_cols=194 Identities=12% Similarity=0.167 Sum_probs=133.2
Q ss_pred eEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEEEe
Q 018593 108 VYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKF 187 (353)
Q Consensus 108 ~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~ 187 (353)
.+..+||.+++|..++++|.+ ...... ... +-+|+++|. ..........++.||..++.|...
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~----r~~~~~-----a~l-----~~~IYviGG---~~~~~~~~~~v~~Yd~~~n~W~~~ 335 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNH----IINYAS-----AIV-----DNEIIIAGG---YNFNNPSLNKVYKINIENKIHVEL 335 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcc----ccceEE-----EEE-----CCEEEEEcC---CCCCCCccceEEEEECCCCeEeeC
Confidence 567899999999999988865 211111 111 227888763 110111245788999999999988
Q ss_pred eeccccceeeeeecCceEEEcceEEeeecCC-----CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEec
Q 018593 188 VSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEIS 261 (353)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~~ 261 (353)
+++ + ..+.....+.++|+||.+++.. ..+.+||+.+++|+.+ ++|... .....++.+|+||++++.
T Consensus 336 ---~~m-~-~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r---~~~~~~~~~g~IYviGG~ 407 (557)
T PHA02713 336 ---PPM-I-KNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL---SSYGMCVLDQYIYIIGGR 407 (557)
T ss_pred ---CCC-c-chhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc---ccccEEEECCEEEEEeCC
Confidence 666 3 3455556899999999999863 4699999999999998 677665 456778899999999872
Q ss_pred C-C--------------------eEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCC-------c
Q 018593 262 D-E--------------------WMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHK-------Q 313 (353)
Q Consensus 262 ~-~--------------------~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~ 313 (353)
. . .-.+... +..+++|+.+..|+.+..... .+..+|.++++++.. .
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~ve~Y-DP~td~W~~v~~m~~~r~~~~-----~~~~~~~IYv~GG~~~~~~~~~~ 481 (557)
T PHA02713 408 TEHIDYTSVHHMNSIDMEEDTHSSNKVIRY-DTVNNIWETLPNFWTGTIRPG-----VVSHKDDIYVVCDIKDEKNVKTC 481 (557)
T ss_pred CcccccccccccccccccccccccceEEEE-CCCCCeEeecCCCCcccccCc-----EEEECCEEEEEeCCCCCCcccee
Confidence 1 1 0112222 333489999988876433221 233377766666532 2
Q ss_pred EEEEECCC-CeEEEeeeecc
Q 018593 314 VLVYHRNG-RLWKEMYSVKY 332 (353)
Q Consensus 314 ~~~yd~~~-~~~~~v~~~~~ 332 (353)
+..||+++ ++|+.+..++.
T Consensus 482 ve~Ydp~~~~~W~~~~~m~~ 501 (557)
T PHA02713 482 IFRYNTNTYNGWELITTTES 501 (557)
T ss_pred EEEecCCCCCCeeEccccCc
Confidence 67999999 89999988763
No 6
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.62 E-value=9.5e-13 Score=115.58 Aligned_cols=303 Identities=12% Similarity=0.149 Sum_probs=153.5
Q ss_pred CCCCHHHHHHHHhcCC-chhhhhhhccchhhhhhcCChHHHHHHhhccCCCCceEEeecccccceeEEEecCCCCceeee
Q 018593 2 GFFPDEVIQQILARLP-VKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKGVICVDNWRGVTEIS 80 (353)
Q Consensus 2 ~~LP~dll~~IL~rLp-~~~l~r~r~Vck~W~~li~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
+.||+|||..|..||| ..+++|+|+|||+||+.+....- . ....+.|++++...... .. +.+ ++.. ... .
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~---~-~~~~~~~~~~~~~~~~~-~~-~~~-~~~~-~~~-~ 75 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK---K-NPFRTRPLILFNPINPS-ET-LTD-DRSY-ISR-P 75 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc---c-CCcccccccccCcccCC-CC-ccc-cccc-ccc-c
Confidence 4799999999999998 59999999999999998764210 0 00111233332210000 00 000 0000 000 0
Q ss_pred cCCCCC--ceeE---eeecCeeEEeeecC-CCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEE-EeecC---C
Q 018593 81 LDFLHD--RVKV---RASCNGLLCCSSIP-EMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGL-ACDLA---K 150 (353)
Q Consensus 81 ~~~~~~--~~~~---~~s~~Gll~~~~~~-~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~-g~d~~---~ 150 (353)
..++.. ...+ -++..|++.-.... ....+.+.||+++.-..+|+...-............+ .+ +.+.. .
T Consensus 76 ~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y-~l~~~~~~~~~~ 154 (373)
T PLN03215 76 GAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAY-QVLDWAKRRETR 154 (373)
T ss_pred cceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceE-EEEecccccccc
Confidence 000000 0111 13457877765322 5578899999999977776421110000000000000 01 11100 0
Q ss_pred CceE-EEEEeeecccCCCCCCcceEEEEEc------CCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCCCEEEE
Q 018593 151 NKYN-VVLAGYHRAFGHRPDGTFKCLVFDS------ESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILA 223 (353)
Q Consensus 151 ~~yk-vv~~~~~~~~~~~~~~~~~~~vy~s------~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~ 223 (353)
..|+ ++.+. . ...+..+..-..|+.. ..+.|..+ +. ........++++|++|.+...+ .+..
T Consensus 155 ~~~~~~~~~~-~--~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l---~~----~~~~~~DIi~~kGkfYAvD~~G-~l~~ 223 (373)
T PLN03215 155 PGYQRSALVK-V--KEGDNHRDGVLGIGRDGKINYWDGNVLKAL---KQ----MGYHFSDIIVHKGQTYALDSIG-IVYW 223 (373)
T ss_pred cceeEEEEEE-e--ecCCCcceEEEEEeecCcEeeecCCeeeEc---cC----CCceeeEEEEECCEEEEEcCCC-eEEE
Confidence 1121 11111 0 0000000111112211 13677777 22 2223455899999999997765 7778
Q ss_pred EECCCceEEEeeCCC--CCCC---CCceeEEEECCEEEEEEe--c---------------CCeEEEEEEecCCCCCeEEE
Q 018593 224 LDLEGDVWRKISLPD--KVGS---ESRSYLLECDGCLSVIEI--S---------------DEWMETWVLKDYYRDEWHSV 281 (353)
Q Consensus 224 ~D~~~~~~~~~~~P~--~~~~---~~~~~l~~~~g~L~~v~~--~---------------~~~~~vw~l~~~~~~~W~~~ 281 (353)
+|..-+ .+.+..+. .... ....++||+.|+|++|.. . ...++|+.++. +..+|+++
T Consensus 224 i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~-~~~~WveV 301 (373)
T PLN03215 224 INSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD-ELAKWMEV 301 (373)
T ss_pred EecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcC-CCCcEEEe
Confidence 874322 12221111 0110 045789999999999987 1 13578898853 44899999
Q ss_pred Eeeccc----cccCcccee--eeeecCCcEEEEEeCCcEEEEECCCCeEEEe
Q 018593 282 DKVSLR----CIKGMVPSI--FPISQTREYVFLATHKQVLVYHRNGRLWKEM 327 (353)
Q Consensus 282 ~~i~~~----~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~yd~~~~~~~~v 327 (353)
..++.. +........ ..-.-.+++|++..+....+||++.++...+
T Consensus 302 ~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 302 KTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDTMPKVFKLDNGNGSSI 353 (373)
T ss_pred cccCCeEEEEECCccEEEecCCCCCccCCEEEEECCCcceEEECCCCCccce
Confidence 998863 211111100 0001245678888888899999999985555
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=99.58 E-value=4e-13 Score=125.56 Aligned_cols=181 Identities=12% Similarity=0.106 Sum_probs=127.9
Q ss_pred ceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEEE
Q 018593 107 GVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRK 186 (353)
Q Consensus 107 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~ 186 (353)
..+..+||.+++|..+|+++.+ ... .. +... +-+|+++|.. +....++.|+..+++|..
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~----r~~--~~---~v~~-----~~~iYviGG~-------~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSP----RLY--AS---GVPA-----NNKLYVVGGL-------PNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CeEEEEECCCCEEEECCCCCch----hhc--ce---EEEE-----CCEEEEECCc-------CCCCceEEEECCCCeEEE
Confidence 4577899999999999998765 211 11 1111 2378888631 112468899999999999
Q ss_pred eeeccccceeeeeecCceEEEcceEEeeecCC---CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEecC
Q 018593 187 FVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC---SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEISD 262 (353)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~---~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~~~ 262 (353)
. +++ | ..+.....+.++|.||.+++.. ..+.+||+.+++|+.+ ++|... .....++.+|+|+++++
T Consensus 346 ~---~~l-~-~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~~~~~~IYv~GG-- 415 (480)
T PHA02790 346 M---PSL-L-KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH---YKSCALVFGRRLFLVGR-- 415 (480)
T ss_pred C---CCC-C-CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc---ccceEEEECCEEEEECC--
Confidence 8 666 4 3344566899999999998854 4688999999999998 555544 45567789999999875
Q ss_pred CeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC------CcEEEEECCCCeEEEe
Q 018593 263 EWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH------KQVLVYHRNGRLWKEM 327 (353)
Q Consensus 263 ~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~yd~~~~~~~~v 327 (353)
..+++ +.++++|+.+..|+.+..... .+.-+|.++++++. ..+..||+++++|+..
T Consensus 416 -~~e~y---dp~~~~W~~~~~m~~~r~~~~-----~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 416 -NAEFY---CESSNTWTLIDDPIYPRDNPE-----LIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -ceEEe---cCCCCcEeEcCCCCCCccccE-----EEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 23444 445589999988876433322 22337776666653 2389999999999865
No 8
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.52 E-value=8.9e-13 Score=105.15 Aligned_cols=141 Identities=24% Similarity=0.448 Sum_probs=96.6
Q ss_pred eEEEcceEEeeecCC---C--EEEEEECCCceE-EEeeCCCCCCC-CCceeEEE-ECCEEEEEEe--cCCeEEEEEEecC
Q 018593 204 VVFVNGALHWLTDSC---S--FILALDLEGDVW-RKISLPDKVGS-ESRSYLLE-CDGCLSVIEI--SDEWMETWVLKDY 273 (353)
Q Consensus 204 ~v~~~g~ly~~~~~~---~--~i~~~D~~~~~~-~~~~~P~~~~~-~~~~~l~~-~~g~L~~v~~--~~~~~~vw~l~~~ 273 (353)
+|++||.+||++... . .|++||+.+|+| ..+++|..... .....|.+ .+|+|+++.. ....++||+|+++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 589999999999876 1 699999999999 88899987762 24566644 4789999975 4457999999976
Q ss_pred C--CCCeEEEEeeccccccCc----cceeeeeecCCcEEEEEe-C------CcEEEEECCCCeEEEeeeeccCccccceE
Q 018593 274 Y--RDEWHSVDKVSLRCIKGM----VPSIFPISQTREYVFLAT-H------KQVLVYHRNGRLWKEMYSVKYGSTLPLWF 340 (353)
Q Consensus 274 ~--~~~W~~~~~i~~~~~~~~----~~~~~~~~~~~~~v~~~~-~------~~~~~yd~~~~~~~~v~~~~~~~~~~~~~ 340 (353)
+ ..+|++..+++....... ..+.+.+.+++++++... . ..++.|+ +++..+++.. +. .. ..|.
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~-~~-~~-~~~~ 156 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDI-ED-KS-SCWP 156 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEccc-cc-CC-CCCC
Confidence 5 489999999987322111 112214455555444322 1 2277777 7777777733 21 11 4566
Q ss_pred EEeeeeee
Q 018593 341 SAHAFRST 348 (353)
Q Consensus 341 ~~~~~~~s 348 (353)
....||||
T Consensus 157 ~~~~YvpS 164 (164)
T PF07734_consen 157 SICNYVPS 164 (164)
T ss_pred CEEEECCC
Confidence 77799997
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.51 E-value=3e-12 Score=122.11 Aligned_cols=193 Identities=13% Similarity=0.162 Sum_probs=130.7
Q ss_pred ceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEEE
Q 018593 107 GVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRK 186 (353)
Q Consensus 107 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~ 186 (353)
..++.+||.|++|..+|+++.+ ...+.. ... +-+++++|.. . .......+++|+..+++|+.
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~----R~~~~~-----~~~-----~~~lyv~GG~---~-~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYP----RKNPGV-----TVF-----NNRIYVIGGI---Y-NSISLNTVESWKPGESKWRE 372 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcc----cccceE-----EEE-----CCEEEEEeCC---C-CCEecceEEEEcCCCCceee
Confidence 4789999999999999988755 211111 111 1267777631 1 11124578899999999998
Q ss_pred eeeccccceeeeeecCceEEEcceEEeeecCC------CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEE
Q 018593 187 FVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC------SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIE 259 (353)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~------~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~ 259 (353)
. +++ | ..+.....+.++|.+|.+++.. ..+..||+.+++|+.+ ++|... .....+..+|+|++++
T Consensus 373 ~---~~l-p-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r---~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 373 E---PPL-I-FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH---YGGCAIYHDGKIYVIG 444 (534)
T ss_pred C---CCc-C-cCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc---cCceEEEECCEEEEEC
Confidence 8 555 3 2345556788999999998842 4689999999999998 666555 4456778899999998
Q ss_pred ec-C-C----eEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC------CcEEEEECCCCeEEEe
Q 018593 260 IS-D-E----WMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH------KQVLVYHRNGRLWKEM 327 (353)
Q Consensus 260 ~~-~-~----~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~yd~~~~~~~~v 327 (353)
+. . . .-.+|.. +..+++|+.+..++.+.... .. +..++.++++++. +.+..||+++++|+.+
T Consensus 445 G~~~~~~~~~~~~v~~y-d~~~~~W~~~~~~~~~r~~~---~~--~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 445 GISYIDNIKVYNIVESY-NPVTNKWTELSSLNFPRINA---SL--CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred CccCCCCCcccceEEEe-cCCCCceeeCCCCCcccccc---eE--EEECCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 72 1 1 1125544 33448999987776543221 11 2226776666543 2499999999999988
Q ss_pred eeec
Q 018593 328 YSVK 331 (353)
Q Consensus 328 ~~~~ 331 (353)
....
T Consensus 519 ~~~p 522 (534)
T PHA03098 519 CKFP 522 (534)
T ss_pred CCCc
Confidence 6543
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.50 E-value=7.6e-12 Score=112.71 Aligned_cols=219 Identities=11% Similarity=0.088 Sum_probs=133.0
Q ss_pred ecCeeEEeeecCCCceEEEEcc--cccceeeccCCCC-CCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCC-
Q 018593 93 SCNGLLCCSSIPEMGVYYVCNP--MTREWKLLPKSRE-RPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRP- 168 (353)
Q Consensus 93 s~~Gll~~~~~~~~~~~~v~NP--~t~~~~~LP~~~~-~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~- 168 (353)
..++-|.+........++++++ .+++|..+|+++. + .. ... .... +-+|+++|.........
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~----R~--~~~---~~~~-----~~~iYv~GG~~~~~~~~~ 80 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGP----RN--QAV---AAAI-----DGKLYVFGGIGKANSEGS 80 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCC----cc--cce---EEEE-----CCEEEEEeCCCCCCCCCc
Confidence 4455665543233456788874 6789999998873 3 11 111 1111 12788886321000000
Q ss_pred -CCcceEEEEEcCCCcEEEeeeccccceeeeeecCceE-EEcceEEeeecCC----------------------------
Q 018593 169 -DGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVV-FVNGALHWLTDSC---------------------------- 218 (353)
Q Consensus 169 -~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v-~~~g~ly~~~~~~---------------------------- 218 (353)
.....++.||..+++|+.. +.+.|. .+.....+ .++|+||.+++..
T Consensus 81 ~~~~~~v~~Yd~~~~~W~~~---~~~~p~-~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 81 PQVFDDVYRYDPKKNSWQKL---DTRSPV-GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred ceecccEEEEECCCCEEecC---CCCCCC-cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 0134688999999999998 322022 22222234 6899999998742
Q ss_pred -----------CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEec-C---CeEEEEEEe-cCCCCCeEEE
Q 018593 219 -----------SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEIS-D---EWMETWVLK-DYYRDEWHSV 281 (353)
Q Consensus 219 -----------~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~~-~---~~~~vw~l~-~~~~~~W~~~ 281 (353)
..+.+||+.+++|+.+ ++|.... ....++..+|+|+++++. . ...++|..+ +.+..+|..+
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~ 234 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL 234 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec
Confidence 3689999999999998 6664211 456678889999999872 1 234566553 2233789999
Q ss_pred Eeeccccc--cCccceeeeeecCCcEEEEEeCC-----------------------cEEEEECCCCeEEEeeeec
Q 018593 282 DKVSLRCI--KGMVPSIFPISQTREYVFLATHK-----------------------QVLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 282 ~~i~~~~~--~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~~yd~~~~~~~~v~~~~ 331 (353)
..|+.+.. .........+..++.++++++.. .+.+||+++++|+.+..+.
T Consensus 235 ~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 309 (346)
T TIGR03547 235 PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP 309 (346)
T ss_pred CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC
Confidence 88876421 11101110223477766665431 3679999999999997664
No 11
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.49 E-value=9.6e-13 Score=100.59 Aligned_cols=104 Identities=28% Similarity=0.536 Sum_probs=79.1
Q ss_pred eEEEcceEEeeecC----CCEEEEEECCCceEEEeeCCCCC-CCCCceeEEEECCEEEEEEe-cC---CeEEEEEEecCC
Q 018593 204 VVFVNGALHWLTDS----CSFILALDLEGDVWRKISLPDKV-GSESRSYLLECDGCLSVIEI-SD---EWMETWVLKDYY 274 (353)
Q Consensus 204 ~v~~~g~ly~~~~~----~~~i~~~D~~~~~~~~~~~P~~~-~~~~~~~l~~~~g~L~~v~~-~~---~~~~vw~l~~~~ 274 (353)
++++||.+||++.. ...|++||+.+|+|+.+++|... .......|++++|+|+++.. .. ..++||+|+|++
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 57899999999886 26999999999999999998211 11167899999999999987 32 469999999988
Q ss_pred CCCeEEEEe-eccc--cc--cCccceeeeeecCCcEEEE
Q 018593 275 RDEWHSVDK-VSLR--CI--KGMVPSIFPISQTREYVFL 308 (353)
Q Consensus 275 ~~~W~~~~~-i~~~--~~--~~~~~~~~~~~~~~~~v~~ 308 (353)
+.+|++... ++.. .. .....+. ++..+|++++.
T Consensus 81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~-g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 KQEWSKKHIVLPPSWQHFVHDCDFSFV-GVTDTGEIVFA 118 (129)
T ss_pred cceEEEEEEECChHHhcccCCcEEEEE-EEcCCCEEEEE
Confidence 899998865 3332 11 1234455 77778886665
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.40 E-value=1.5e-10 Score=105.20 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=131.1
Q ss_pred eecCeeEEeeecCCCceEEEEccc--ccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCC-
Q 018593 92 ASCNGLLCCSSIPEMGVYYVCNPM--TREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRP- 168 (353)
Q Consensus 92 ~s~~Gll~~~~~~~~~~~~v~NP~--t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~- 168 (353)
+..++-+++........++++++. +++|..+|+++... . ..... ... +-+|+++|.........
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~---r--~~~~~---v~~-----~~~IYV~GG~~~~~~~~~ 101 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGP---R--EQAVA---AFI-----DGKLYVFGGIGKTNSEGS 101 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCC---c--ccceE---EEE-----CCEEEEEcCCCCCCCCCc
Confidence 344566655432334567788765 57899999876420 1 11111 111 12677776321000000
Q ss_pred -CCcceEEEEEcCCCcEEEeeeccccceeeeeecCceEE-EcceEEeeecCC----------------------------
Q 018593 169 -DGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVF-VNGALHWLTDSC---------------------------- 218 (353)
Q Consensus 169 -~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~-~~g~ly~~~~~~---------------------------- 218 (353)
.....++.||..+++|+.. +...|.. +.....+. .+|+||.+++..
T Consensus 102 ~~~~~~v~~YD~~~n~W~~~---~~~~p~~-~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~ 177 (376)
T PRK14131 102 PQVFDDVYKYDPKTNSWQKL---DTRSPVG-LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY 177 (376)
T ss_pred eeEcccEEEEeCCCCEEEeC---CCCCCCc-ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence 0134688999999999998 4221222 22233444 799999998742
Q ss_pred -----------CEEEEEECCCceEEEe-eCCC-CCCCCCceeEEEECCEEEEEEec----CCeEEEEEEe-cCCCCCeEE
Q 018593 219 -----------SFILALDLEGDVWRKI-SLPD-KVGSESRSYLLECDGCLSVIEIS----DEWMETWVLK-DYYRDEWHS 280 (353)
Q Consensus 219 -----------~~i~~~D~~~~~~~~~-~~P~-~~~~~~~~~l~~~~g~L~~v~~~----~~~~~vw~l~-~~~~~~W~~ 280 (353)
..+.+||+.+++|+.+ ++|. .. ....++..+++|+++++. ....++|..+ +.+..+|.+
T Consensus 178 ~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 254 (376)
T PRK14131 178 FDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQK 254 (376)
T ss_pred hcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceee
Confidence 2589999999999998 5664 33 355678889999999871 2345666653 223488999
Q ss_pred EEeecccccc----CccceeeeeecCCcEEEEEeCC-----------------------cEEEEECCCCeEEEeeeec
Q 018593 281 VDKVSLRCIK----GMVPSIFPISQTREYVFLATHK-----------------------QVLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 281 ~~~i~~~~~~----~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~~yd~~~~~~~~v~~~~ 331 (353)
+..|+.+... ...... .+..++.++++++.. .+-+||+++++|+.+..+.
T Consensus 255 ~~~~p~~~~~~~~~~~~~~~-a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 331 (376)
T PRK14131 255 LPDLPPAPGGSSQEGVAGAF-AGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP 331 (376)
T ss_pred cCCCCCCCcCCcCCccceEe-ceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC
Confidence 9988763211 101111 223366756555421 1457999999999987664
No 13
>PLN02153 epithiospecifier protein
Probab=99.39 E-value=1.9e-10 Score=103.38 Aligned_cols=203 Identities=11% Similarity=0.129 Sum_probs=122.3
Q ss_pred ceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEEE
Q 018593 107 GVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRK 186 (353)
Q Consensus 107 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~ 186 (353)
..++++||.+++|..++++...+. ....... ...+ +-+++++|.. .. ......+++||.++++|+.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~--~~~~~~~---~~~~-----~~~iyv~GG~---~~-~~~~~~v~~yd~~t~~W~~ 115 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPR--ISCLGVR---MVAV-----GTKLYIFGGR---DE-KREFSDFYSYDTVKNEWTF 115 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCC--CccCceE---EEEE-----CCEEEEECCC---CC-CCccCcEEEEECCCCEEEE
Confidence 478999999999999887643210 0011111 1111 2378887631 10 1123478899999999998
Q ss_pred eeeccccceeeeeecCceEEEcceEEeeecCC-----------CEEEEEECCCceEEEeeCCC-CCCCCCceeEEEECCE
Q 018593 187 FVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----------SFILALDLEGDVWRKISLPD-KVGSESRSYLLECDGC 254 (353)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----------~~i~~~D~~~~~~~~~~~P~-~~~~~~~~~l~~~~g~ 254 (353)
.+.+........+.....+..+++||.+++.. ..+.+||+.+++|+.++.+. .........++..+|+
T Consensus 116 ~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~ 195 (341)
T PLN02153 116 LTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGK 195 (341)
T ss_pred eccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCe
Confidence 83321100122344455788999999998842 25889999999999874321 1111134567788999
Q ss_pred EEEEEecC-----------CeEEEEEEecCCCCCeEEEEeec---cccccCccceeeeeecCCcEEEEEeC---------
Q 018593 255 LSVIEISD-----------EWMETWVLKDYYRDEWHSVDKVS---LRCIKGMVPSIFPISQTREYVFLATH--------- 311 (353)
Q Consensus 255 L~~v~~~~-----------~~~~vw~l~~~~~~~W~~~~~i~---~~~~~~~~~~~~~~~~~~~~v~~~~~--------- 311 (353)
|+++.+.. ..-+++.+ +..+.+|+++..++ .+..... ++.-++.++++++.
T Consensus 196 iyv~GG~~~~~~~gG~~~~~~~~v~~y-d~~~~~W~~~~~~g~~P~~r~~~~-----~~~~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 196 IWVVYGFATSILPGGKSDYESNAVQFF-DPASGKWTEVETTGAKPSARSVFA-----HAVVGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred EEEEeccccccccCCccceecCceEEE-EcCCCcEEeccccCCCCCCcceee-----eEEECCEEEEECcccCCcccccc
Confidence 99986511 01235555 33448999987543 2221111 22235665556542
Q ss_pred ------CcEEEEECCCCeEEEeee
Q 018593 312 ------KQVLVYHRNGRLWKEMYS 329 (353)
Q Consensus 312 ------~~~~~yd~~~~~~~~v~~ 329 (353)
+.++.||+++++|+.+..
T Consensus 270 ~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 270 GPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred ccccccccEEEEEcCccEEEeccC
Confidence 248999999999999854
No 14
>PLN02193 nitrile-specifier protein
Probab=99.36 E-value=1.8e-10 Score=107.50 Aligned_cols=205 Identities=13% Similarity=0.186 Sum_probs=125.9
Q ss_pred ceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEEE
Q 018593 107 GVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRK 186 (353)
Q Consensus 107 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~ 186 (353)
..++++||.+++|..+|+....+. ....... +... +-++++++.. .. ......+++||+.+++|+.
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~--~~~~~~~---~v~~-----~~~lYvfGG~---~~-~~~~ndv~~yD~~t~~W~~ 258 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPH--LSCLGVR---MVSI-----GSTLYVFGGR---DA-SRQYNGFYSFDTTTNEWKL 258 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCC--CcccceE---EEEE-----CCEEEEECCC---CC-CCCCccEEEEECCCCEEEE
Confidence 468999999999998876432100 0011111 1111 1267777521 10 1123578899999999999
Q ss_pred eeeccccceeeeeecCceEEEcceEEeeecCC-----CEEEEEECCCceEEEeeCCCCC-CCCCceeEEEECCEEEEEEe
Q 018593 187 FVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----SFILALDLEGDVWRKISLPDKV-GSESRSYLLECDGCLSVIEI 260 (353)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----~~i~~~D~~~~~~~~~~~P~~~-~~~~~~~l~~~~g~L~~v~~ 260 (353)
+...... ...+.....+..+++||.+++.. ..+.+||+.+++|+.++.|... .......++..+|+++++.+
T Consensus 259 l~~~~~~--P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG 336 (470)
T PLN02193 259 LTPVEEG--PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYG 336 (470)
T ss_pred cCcCCCC--CCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEEC
Confidence 8332111 22344455778899999998753 4688999999999988543221 11144566778999999987
Q ss_pred -c-CCeEEEEEEecCCCCCeEEEEeecc-ccccCccceeeeeecCCcEEEEEeC---------------CcEEEEECCCC
Q 018593 261 -S-DEWMETWVLKDYYRDEWHSVDKVSL-RCIKGMVPSIFPISQTREYVFLATH---------------KQVLVYHRNGR 322 (353)
Q Consensus 261 -~-~~~~~vw~l~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~~~yd~~~~ 322 (353)
. ...-++|.+ +..+.+|+++..++. +..... .. ++..++.++++.+. +.++.||++|+
T Consensus 337 ~~g~~~~dv~~y-D~~t~~W~~~~~~g~~P~~R~~--~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 337 FNGCEVDDVHYY-DPVQDKWTQVETFGVRPSERSV--FA-SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CCCCccCceEEE-ECCCCEEEEeccCCCCCCCcce--eE-EEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 2 122456666 334488999876632 111110 11 22335665555542 13899999999
Q ss_pred eEEEeeeec
Q 018593 323 LWKEMYSVK 331 (353)
Q Consensus 323 ~~~~v~~~~ 331 (353)
+|+.+..+.
T Consensus 413 ~W~~~~~~~ 421 (470)
T PLN02193 413 QWERLDKFG 421 (470)
T ss_pred EEEEcccCC
Confidence 999997654
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.32 E-value=7e-10 Score=98.93 Aligned_cols=197 Identities=10% Similarity=0.172 Sum_probs=120.4
Q ss_pred eEEEE-ccccc-ceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcE-
Q 018593 108 VYYVC-NPMTR-EWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRW- 184 (353)
Q Consensus 108 ~~~v~-NP~t~-~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W- 184 (353)
+++++ +|..+ +|..+++++.+ .. ... +... +-+++++|.. . .......++.||..++.|
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~----r~-~~~----~~~~-----~~~lyviGG~---~-~~~~~~~v~~~d~~~~~w~ 101 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYE----AA-YGA----SVSV-----ENGIYYIGGS---N-SSERFSSVYRITLDESKEE 101 (323)
T ss_pred eeEEEecCCCceeEEEcccCCcc----cc-ceE----EEEE-----CCEEEEEcCC---C-CCCCceeEEEEEEcCCcee
Confidence 55666 45433 79998887765 11 111 1111 1267777621 1 111245788999999988
Q ss_pred ---EEeeeccccceeeeeecCceEEEcceEEeeecCC-----CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEE
Q 018593 185 ---RKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCL 255 (353)
Q Consensus 185 ---~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L 255 (353)
+.. +++ |.. +.....++++|+||.+++.. ..+.+||+.+++|+.+ ++|.... ....++..+|+|
T Consensus 102 ~~~~~~---~~l-p~~-~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r--~~~~~~~~~~~i 174 (323)
T TIGR03548 102 LICETI---GNL-PFT-FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR--VQPVCVKLQNEL 174 (323)
T ss_pred eeeeEc---CCC-CcC-ccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC--CcceEEEECCEE
Confidence 444 555 332 33455788999999998852 5799999999999998 4664221 345667889999
Q ss_pred EEEEec--CCeEEEEEEecCCCCCeEEEEeeccccccCc-cceeeeeecCCcEEEEEeC---------------------
Q 018593 256 SVIEIS--DEWMETWVLKDYYRDEWHSVDKVSLRCIKGM-VPSIFPISQTREYVFLATH--------------------- 311 (353)
Q Consensus 256 ~~v~~~--~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~--------------------- 311 (353)
+++++. ....+++.. +..+++|+++..|+....... ......+..++.++++++.
T Consensus 175 Yv~GG~~~~~~~~~~~y-d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 253 (323)
T TIGR03548 175 YVFGGGSNIAYTDGYKY-SPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLK 253 (323)
T ss_pred EEEcCCCCccccceEEE-ecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhh
Confidence 999872 223345555 334488999877642111100 0011022235565555442
Q ss_pred -----------------CcEEEEECCCCeEEEeeee
Q 018593 312 -----------------KQVLVYHRNGRLWKEMYSV 330 (353)
Q Consensus 312 -----------------~~~~~yd~~~~~~~~v~~~ 330 (353)
+.+.+||+++++|+.+..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 289 (323)
T TIGR03548 254 GYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS 289 (323)
T ss_pred hhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc
Confidence 2489999999999999755
No 16
>PLN02193 nitrile-specifier protein
Probab=99.31 E-value=8.3e-10 Score=103.12 Aligned_cols=202 Identities=14% Similarity=0.129 Sum_probs=118.7
Q ss_pred eEEEEcccc----cceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCc
Q 018593 108 VYYVCNPMT----REWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNR 183 (353)
Q Consensus 108 ~~~v~NP~t----~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~ 183 (353)
..++++|.+ .+|..+++....+.+ +..+..+ .. +-+|+.++... .........+++||.++++
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~p-R~~h~~~-----~~-----~~~iyv~GG~~--~~~~~~~~~v~~yD~~~~~ 204 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGL-RCSHGIA-----QV-----GNKIYSFGGEF--TPNQPIDKHLYVFDLETRT 204 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCC-ccccEEE-----EE-----CCEEEEECCcC--CCCCCeeCcEEEEECCCCE
Confidence 457778766 789988764221100 1111111 11 12677775210 0000112458899999999
Q ss_pred EEEeeeccccceeeeeecCceEEEcceEEeeecCC-----CEEEEEECCCceEEEe-eC---CCCCCCCCceeEEEECCE
Q 018593 184 WRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----SFILALDLEGDVWRKI-SL---PDKVGSESRSYLLECDGC 254 (353)
Q Consensus 184 W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----~~i~~~D~~~~~~~~~-~~---P~~~~~~~~~~l~~~~g~ 254 (353)
|...+...+. |...+.....+.++++||.+++.. ..+.+||+.+++|+.+ ++ |..+ ....++..+++
T Consensus 205 W~~~~~~g~~-P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R---~~h~~~~~~~~ 280 (470)
T PLN02193 205 WSISPATGDV-PHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR---SFHSMAADEEN 280 (470)
T ss_pred EEeCCCCCCC-CCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc---cceEEEEECCE
Confidence 9987322223 322233445788999999998753 4688999999999998 44 3333 44566778999
Q ss_pred EEEEEecC---CeEEEEEEecCCCCCeEEEEeecc-ccccCccceeeeeecCCcEEEEEeC-----CcEEEEECCCCeEE
Q 018593 255 LSVIEISD---EWMETWVLKDYYRDEWHSVDKVSL-RCIKGMVPSIFPISQTREYVFLATH-----KQVLVYHRNGRLWK 325 (353)
Q Consensus 255 L~~v~~~~---~~~~vw~l~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~yd~~~~~~~ 325 (353)
|+++++.. ..-+++.+ +..+.+|..+..... +.... ... .+..++.++++.+. +.+..||+++++|+
T Consensus 281 iYv~GG~~~~~~~~~~~~y-d~~t~~W~~~~~~~~~~~~R~-~~~--~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 281 VYVFGGVSATARLKTLDSY-NIVDKKWFHCSTPGDSFSIRG-GAG--LEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred EEEECCCCCCCCcceEEEE-ECCCCEEEeCCCCCCCCCCCC-CcE--EEEECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 99998721 22245544 333478997653221 11111 011 12235665655542 34999999999999
Q ss_pred Eeeee
Q 018593 326 EMYSV 330 (353)
Q Consensus 326 ~v~~~ 330 (353)
.+..+
T Consensus 357 ~~~~~ 361 (470)
T PLN02193 357 QVETF 361 (470)
T ss_pred EeccC
Confidence 99654
No 17
>PLN02153 epithiospecifier protein
Probab=99.29 E-value=8.5e-10 Score=99.12 Aligned_cols=151 Identities=13% Similarity=0.120 Sum_probs=96.0
Q ss_pred ceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC-----CEEEEEECCCceEEEe-eC-----CCCC
Q 018593 172 FKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----SFILALDLEGDVWRKI-SL-----PDKV 240 (353)
Q Consensus 172 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----~~i~~~D~~~~~~~~~-~~-----P~~~ 240 (353)
..+++||..+++|...+..... |...+.....+.++++||.+++.. ..+.+||+.+++|+.+ ++ |..+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~-p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDV-PRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCC-CCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 4688999999999988322222 221122344788999999998853 4689999999999988 34 3333
Q ss_pred CCCCceeEEEECCEEEEEEe-cCC-------e-EEEEEEecCCCCCeEEEEeeccc-cccCccceeeeeecCCcEEEEEe
Q 018593 241 GSESRSYLLECDGCLSVIEI-SDE-------W-METWVLKDYYRDEWHSVDKVSLR-CIKGMVPSIFPISQTREYVFLAT 310 (353)
Q Consensus 241 ~~~~~~~l~~~~g~L~~v~~-~~~-------~-~~vw~l~~~~~~~W~~~~~i~~~-~~~~~~~~~~~~~~~~~~v~~~~ 310 (353)
....++..+++|+++++ ... . -+++.+ +..+.+|..+..++.. ..... ..+ +..+++++++.+
T Consensus 129 ---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y-d~~~~~W~~l~~~~~~~~~r~~-~~~--~~~~~~iyv~GG 201 (341)
T PLN02153 129 ---TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY-NIADGKWVQLPDPGENFEKRGG-AGF--AVVQGKIWVVYG 201 (341)
T ss_pred ---eeeEEEEECCEEEEECCccCCCccCCCcccceEEEE-ECCCCeEeeCCCCCCCCCCCCc-ceE--EEECCeEEEEec
Confidence 45566788999999987 211 1 145555 3344789987655421 11110 011 122556555432
Q ss_pred --------------CCcEEEEECCCCeEEEeeee
Q 018593 311 --------------HKQVLVYHRNGRLWKEMYSV 330 (353)
Q Consensus 311 --------------~~~~~~yd~~~~~~~~v~~~ 330 (353)
.+.+..||+++++|+++...
T Consensus 202 ~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 202 FATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred cccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 13499999999999998643
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=99.29 E-value=1.6e-10 Score=108.27 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=105.2
Q ss_pred cceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC--CEEEEEECCCceEEEe-eCCCCCCCCCcee
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC--SFILALDLEGDVWRKI-SLPDKVGSESRSY 247 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~--~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~ 247 (353)
...++.||+.+++|... +++ +. .+.....+.++|.||.+++.. ..+..||+.+++|+.+ ++|... ....
T Consensus 286 ~~~v~~Ydp~~~~W~~~---~~m-~~-~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r---~~~~ 357 (480)
T PHA02790 286 HNNAIAVNYISNNWIPI---PPM-NS-PRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR---CNPA 357 (480)
T ss_pred CCeEEEEECCCCEEEEC---CCC-Cc-hhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCC---cccE
Confidence 45688999999999999 655 32 344455788999999999853 4689999999999988 666555 5667
Q ss_pred EEEECCEEEEEEe-cC--CeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCcEEEEECCCCeE
Q 018593 248 LLECDGCLSVIEI-SD--EWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLW 324 (353)
Q Consensus 248 l~~~~g~L~~v~~-~~--~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~~~~ 324 (353)
.++.+|+||++++ .+ ...+.+ +..++.|+.+..|+.+.... . .+..+|.+++++ +....||+++++|
T Consensus 358 ~~~~~g~IYviGG~~~~~~~ve~y---dp~~~~W~~~~~m~~~r~~~----~-~~~~~~~IYv~G--G~~e~ydp~~~~W 427 (480)
T PHA02790 358 VASINNVIYVIGGHSETDTTTEYL---LPNHDQWQFGPSTYYPHYKS----C-ALVFGRRLFLVG--RNAEFYCESSNTW 427 (480)
T ss_pred EEEECCEEEEecCcCCCCccEEEE---eCCCCEEEeCCCCCCccccc----e-EEEECCEEEEEC--CceEEecCCCCcE
Confidence 8899999999988 22 344555 44448999988887643322 1 233467755554 3477899999999
Q ss_pred EEeeeec
Q 018593 325 KEMYSVK 331 (353)
Q Consensus 325 ~~v~~~~ 331 (353)
+.+..+.
T Consensus 428 ~~~~~m~ 434 (480)
T PHA02790 428 TLIDDPI 434 (480)
T ss_pred eEcCCCC
Confidence 9998765
No 19
>PHA03098 kelch-like protein; Provisional
Probab=99.27 E-value=3e-10 Score=108.42 Aligned_cols=192 Identities=11% Similarity=0.156 Sum_probs=125.4
Q ss_pred eEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEEEe
Q 018593 108 VYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKF 187 (353)
Q Consensus 108 ~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~ 187 (353)
.+.-+|+.+++|..+++.+.. . ... +... +-+++.+|. ..........+..||..+++|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~----~---~~~---~~~~-----~~~lyv~GG---~~~~~~~~~~v~~yd~~~~~W~~~ 326 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYV----Y---CFG---SVVL-----NNVIYFIGG---MNKNNLSVNSVVSYDTKTKSWNKV 326 (534)
T ss_pred eeeecchhhhhcccccCcccc----c---cce---EEEE-----CCEEEEECC---CcCCCCeeccEEEEeCCCCeeeEC
Confidence 344578889999988765532 1 111 1111 236777752 111111234688999999999888
Q ss_pred eeccccceeeeeecCceEEEcceEEeeecCC-----CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEe-
Q 018593 188 VSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEI- 260 (353)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~- 260 (353)
+.+ + ..+.....+.++|.+|.+++.. ..+..||+.+++|+.+ ++|... .....+..+|+|+++++
T Consensus 327 ---~~~-~-~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r---~~~~~~~~~~~iYv~GG~ 398 (534)
T PHA03098 327 ---PEL-I-YPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR---YNPCVVNVNNLIYVIGGI 398 (534)
T ss_pred ---CCC-C-cccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC---ccceEEEECCEEEEECCc
Confidence 555 3 2344556888999999999864 5688999999999988 677655 45667888999999987
Q ss_pred c-CC--eEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC---------CcEEEEECCCCeEEEee
Q 018593 261 S-DE--WMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH---------KQVLVYHRNGRLWKEMY 328 (353)
Q Consensus 261 ~-~~--~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~yd~~~~~~~~v~ 328 (353)
. .. .-.++.. +..+++|..+..+|.+.... . .+..++.++++++. ..+..||+++++|+.+.
T Consensus 399 ~~~~~~~~~v~~y-d~~t~~W~~~~~~p~~r~~~----~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 399 SKNDELLKTVECF-SLNTNKWSKGSPLPISHYGG----C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred CCCCcccceEEEE-eCCCCeeeecCCCCccccCc----e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 2 11 1234444 33448899988777543221 1 23336665555542 12899999999999996
Q ss_pred eec
Q 018593 329 SVK 331 (353)
Q Consensus 329 ~~~ 331 (353)
.+.
T Consensus 473 ~~~ 475 (534)
T PHA03098 473 SLN 475 (534)
T ss_pred CCC
Confidence 543
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.17 E-value=4.5e-09 Score=95.63 Aligned_cols=146 Identities=16% Similarity=0.286 Sum_probs=93.5
Q ss_pred ceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC--------CEEEEEECCCceEEEe-eCCCCCCC
Q 018593 172 FKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC--------SFILALDLEGDVWRKI-SLPDKVGS 242 (353)
Q Consensus 172 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~--------~~i~~~D~~~~~~~~~-~~P~~~~~ 242 (353)
..+++||..++.|+.. +.+ |...+.....+.++++||.+++.. .....||+++.+|+.+ ++|.....
T Consensus 189 ~~v~~YD~~t~~W~~~---~~~-p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNA---GES-PFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeEC---CcC-CCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 4689999999999998 555 443344555788899999998742 2345678899999988 66654321
Q ss_pred C-----CceeEEEECCEEEEEEecC--C--------e-------EEEEEEe--cCCCCCeEEEEeeccccccCccceeee
Q 018593 243 E-----SRSYLLECDGCLSVIEISD--E--------W-------METWVLK--DYYRDEWHSVDKVSLRCIKGMVPSIFP 298 (353)
Q Consensus 243 ~-----~~~~l~~~~g~L~~v~~~~--~--------~-------~~vw~l~--~~~~~~W~~~~~i~~~~~~~~~~~~~~ 298 (353)
. .....+..+|+|+++++.. . . -.+|..+ +.+.+.|+.+..||.+.... . +
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~----~-a 339 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYG----V-S 339 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccce----E-E
Confidence 0 1122467899999998721 0 0 0123222 22337899988777643222 1 3
Q ss_pred eecCCcEEEEEeCC-------cEEEEECCCCeEEE
Q 018593 299 ISQTREYVFLATHK-------QVLVYHRNGRLWKE 326 (353)
Q Consensus 299 ~~~~~~~v~~~~~~-------~~~~yd~~~~~~~~ 326 (353)
+.-++.++++++.. .+..|+++++++..
T Consensus 340 v~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 340 VSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 33467766666532 38899999887764
No 21
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.05 E-value=1.7e-10 Score=71.09 Aligned_cols=42 Identities=29% Similarity=0.695 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHhcCCchhhhhhhccchhhhhhcCChHHHH
Q 018593 1 MGFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIR 42 (353)
Q Consensus 1 ~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~li~~~~F~~ 42 (353)
|..||+|++.+||++||.+++.+++.|||+|++++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998775543
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.04 E-value=7.2e-08 Score=86.01 Aligned_cols=132 Identities=11% Similarity=0.064 Sum_probs=85.6
Q ss_pred ceEEEEcccccce----eeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCC
Q 018593 107 GVYYVCNPMTREW----KLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESN 182 (353)
Q Consensus 107 ~~~~v~NP~t~~~----~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~ 182 (353)
..+..+|+.+++| ..+|++|.+ ... .. +..+ +-+|+++|.. . .......+++||.+++
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~----~~~--~~---~~~~-----~~~iYv~GG~---~-~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFT----FEN--GS---ACYK-----DGTLYVGGGN---R-NGKPSNKSYLFNLETQ 149 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcC----ccC--ce---EEEE-----CCEEEEEeCc---C-CCccCceEEEEcCCCC
Confidence 5788899999987 678887765 211 11 1112 1277777631 1 1122457899999999
Q ss_pred cEEEeeeccccceeeeeecCceEEEcceEEeeecCC----CEEEEEECCCceEEEe-eCCCCCCCC---CceeEEEECCE
Q 018593 183 RWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC----SFILALDLEGDVWRKI-SLPDKVGSE---SRSYLLECDGC 254 (353)
Q Consensus 183 ~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~----~~i~~~D~~~~~~~~~-~~P~~~~~~---~~~~l~~~~g~ 254 (353)
+|... +++ |...+.....+.++|+||.+++.. ..+.+||+.+++|+.+ +++...... ....++..+|+
T Consensus 150 ~W~~~---~~~-p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ 225 (323)
T TIGR03548 150 EWFEL---PDF-PGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESL 225 (323)
T ss_pred CeeEC---CCC-CCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCE
Confidence 99998 555 333344445678999999998753 2468999999999988 333211000 22334555789
Q ss_pred EEEEEe
Q 018593 255 LSVIEI 260 (353)
Q Consensus 255 L~~v~~ 260 (353)
|+++++
T Consensus 226 iyv~GG 231 (323)
T TIGR03548 226 LLCIGG 231 (323)
T ss_pred EEEECC
Confidence 999887
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.00 E-value=4.8e-08 Score=88.06 Aligned_cols=160 Identities=13% Similarity=0.172 Sum_probs=101.1
Q ss_pred eEEEEEeeecccCCCCCCcceEEEEEc--CCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC-----------C
Q 018593 153 YNVVLAGYHRAFGHRPDGTFKCLVFDS--ESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----------S 219 (353)
Q Consensus 153 ykvv~~~~~~~~~~~~~~~~~~~vy~s--~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----------~ 219 (353)
-+|++++.. ....+.+|+. .+++|+.. +++ |...+.....+.++|.||.+++.. .
T Consensus 18 ~~vyv~GG~--------~~~~~~~~d~~~~~~~W~~l---~~~-p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 18 DKVYVGLGS--------AGTSWYKLDLKKPSKGWQKI---ADF-PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred CEEEEEccc--------cCCeeEEEECCCCCCCceEC---CCC-CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecc
Confidence 377776521 1246778886 56889999 665 433445556889999999999852 3
Q ss_pred EEEEEECCCceEEEeeCCCCCCCCCceeEE-EECCEEEEEEecC-C----------------------------------
Q 018593 220 FILALDLEGDVWRKISLPDKVGSESRSYLL-ECDGCLSVIEISD-E---------------------------------- 263 (353)
Q Consensus 220 ~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~-~~~g~L~~v~~~~-~---------------------------------- 263 (353)
.+.+||+.+++|+.++.|..... .....+ ..+|+|+++++.. .
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDY 164 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHc
Confidence 58899999999999853221111 222223 6799999998721 1
Q ss_pred --eEEEEEEecCCCCCeEEEEeecc-ccccCccceeeeeecCCcEEEEEeCC-------cEEEE--ECCCCeEEEeeeec
Q 018593 264 --WMETWVLKDYYRDEWHSVDKVSL-RCIKGMVPSIFPISQTREYVFLATHK-------QVLVY--HRNGRLWKEMYSVK 331 (353)
Q Consensus 264 --~~~vw~l~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~~y--d~~~~~~~~v~~~~ 331 (353)
.-.++.. +..+++|+.+..|+. +.... . .+..++.++++.+.. .+..| |+++++|..+..+.
T Consensus 165 ~~~~~v~~Y-Dp~t~~W~~~~~~p~~~r~~~----~-~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 165 FWNKNVLSY-DPSTNQWRNLGENPFLGTAGS----A-IVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred CccceEEEE-ECCCCceeECccCCCCcCCCc----e-EEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 0235555 334489999988875 22211 1 223367766665431 24445 55788999998774
No 24
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.89 E-value=7.8e-10 Score=68.55 Aligned_cols=43 Identities=33% Similarity=0.517 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHhcCCchhhhhhhccchhhhhhcCChHHHHHH
Q 018593 2 GFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLY 44 (353)
Q Consensus 2 ~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~li~~~~F~~~~ 44 (353)
..||+|++.+||.+|+..++++++.|||+|++++.+..+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 4699999999999999999999999999999999999886654
No 25
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.81 E-value=3e-09 Score=63.51 Aligned_cols=39 Identities=36% Similarity=0.748 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhcCCchhhhhhhccchhhhhhcCChHHHH
Q 018593 4 FPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIR 42 (353)
Q Consensus 4 LP~dll~~IL~rLp~~~l~r~r~Vck~W~~li~~~~F~~ 42 (353)
||+|++.+||.+|+..++.++++|||+|+.++.++.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887743
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.56 E-value=6.7e-06 Score=67.89 Aligned_cols=204 Identities=12% Similarity=0.168 Sum_probs=120.4
Q ss_pred CCCceEEEEcccccceeeccCCCCCCC-------ccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCC-cceEE
Q 018593 104 PEMGVYYVCNPMTREWKLLPKSRERPV-------TRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDG-TFKCL 175 (353)
Q Consensus 104 ~~~~~~~v~NP~t~~~~~LP~~~~~~~-------~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~-~~~~~ 175 (353)
....++.+.|..+-+|..+||.-.... ..+.+.+.. ...+ .=|++.-|. ..++.+ -....
T Consensus 41 ~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHt---vV~y-----~d~~yvWGG----RND~egaCN~Ly 108 (392)
T KOG4693|consen 41 KDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHT---VVEY-----QDKAYVWGG----RNDDEGACNLLY 108 (392)
T ss_pred CCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCce---EEEE-----cceEEEEcC----ccCcccccceee
Confidence 356789999999999999998322100 001111111 0111 113444321 111111 23556
Q ss_pred EEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC-------CEEEEEECCCceEEEee---CCCCCCCCCc
Q 018593 176 VFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-------SFILALDLEGDVWRKIS---LPDKVGSESR 245 (353)
Q Consensus 176 vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-------~~i~~~D~~~~~~~~~~---~P~~~~~~~~ 245 (353)
.||.+++.|+..+- ... -.+.+..+..++.++.+|..++-. .-+.++|++|.+|+.+. -|+...+ .
T Consensus 109 ~fDp~t~~W~~p~v-~G~-vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD--F 184 (392)
T KOG4693|consen 109 EFDPETNVWKKPEV-EGF-VPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD--F 184 (392)
T ss_pred eeccccccccccce-eee-cCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh--h
Confidence 89999999987722 111 234455666888899999988753 56899999999999992 3443322 3
Q ss_pred eeEEEECCEEEEEEecC------------CeEEEEEEecCCCCCeEEEEeecc--ccccCccceeeeeecCCcEEEEEeC
Q 018593 246 SYLLECDGCLSVIEISD------------EWMETWVLKDYYRDEWHSVDKVSL--RCIKGMVPSIFPISQTREYVFLATH 311 (353)
Q Consensus 246 ~~l~~~~g~L~~v~~~~------------~~~~vw~l~~~~~~~W~~~~~i~~--~~~~~~~~~~~~~~~~~~~v~~~~~ 311 (353)
..-...+|..+++++.. -.-.|-.| +..++.|..-..-+. .+... .. .+..+|.+++++++
T Consensus 185 H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~l-d~~T~aW~r~p~~~~~P~GRRS---HS-~fvYng~~Y~FGGY 259 (392)
T KOG4693|consen 185 HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMAL-DLATGAWTRTPENTMKPGGRRS---HS-TFVYNGKMYMFGGY 259 (392)
T ss_pred hhhhhccceEEEeccccccCCCccchhhhhcceeEEE-eccccccccCCCCCcCCCcccc---cc-eEEEcceEEEeccc
Confidence 34456678999988721 11123333 334478887522222 12221 11 34457887777765
Q ss_pred C--------cEEEEECCCCeEEEee
Q 018593 312 K--------QVLVYHRNGRLWKEMY 328 (353)
Q Consensus 312 ~--------~~~~yd~~~~~~~~v~ 328 (353)
+ +++.||++|..|.++.
T Consensus 260 ng~ln~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 260 NGTLNVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred chhhhhhhcceeecccccchheeee
Confidence 4 3999999999999994
No 27
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.43 E-value=2.4e-05 Score=73.39 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=108.8
Q ss_pred eEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC------CEEEEEECCCceEEEe----eCCCCCCC
Q 018593 173 KCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC------SFILALDLEGDVWRKI----SLPDKVGS 242 (353)
Q Consensus 173 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~------~~i~~~D~~~~~~~~~----~~P~~~~~ 242 (353)
.+.+++..+..|......... | ..+.....+.++..||.+++.. ..+..||+.+.+|..+ ..|..+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~-p-~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r-- 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDE-P-SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR-- 164 (482)
T ss_pred eeEEeecCCcccccccccCCC-C-CcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc--
Confidence 588999999999877544443 3 4566677889999999999875 3799999999999998 224444
Q ss_pred CCceeEEEECCEEEEEEe----cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCC------
Q 018593 243 ESRSYLLECDGCLSVIEI----SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHK------ 312 (353)
Q Consensus 243 ~~~~~l~~~~g~L~~v~~----~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 312 (353)
....++..+.+|+++++ .+...++|++ +.....|.++.+.+.....-....+ .+.++.- +++.+..
T Consensus 165 -~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~-d~~~~~W~~~~~~g~~P~pR~gH~~-~~~~~~~-~v~gG~~~~~~~l 240 (482)
T KOG0379|consen 165 -AGHSATVVGTKLVVFGGIGGTGDSLNDLHIY-DLETSTWSELDTQGEAPSPRYGHAM-VVVGNKL-LVFGGGDDGDVYL 240 (482)
T ss_pred -ccceEEEECCEEEEECCccCcccceeeeeee-ccccccceecccCCCCCCCCCCceE-EEECCeE-EEEeccccCCcee
Confidence 45667777789999887 2256789988 4444779999888773211112223 3333443 4443322
Q ss_pred -cEEEEECCCCeEEEeeeeccCccccceEEE
Q 018593 313 -QVLVYHRNGRLWKEMYSVKYGSTLPLWFSA 342 (353)
Q Consensus 313 -~~~~yd~~~~~~~~v~~~~~~~~~~~~~~~ 342 (353)
.+..+|+.+.+|..+....+...-..+|..
T Consensus 241 ~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~ 271 (482)
T KOG0379|consen 241 NDVHILDLSTWEWKLLPTGGDLPSPRSGHSL 271 (482)
T ss_pred cceEeeecccceeeeccccCCCCCCcceeee
Confidence 399999999999977655443333334443
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.34 E-value=4e-05 Score=67.22 Aligned_cols=203 Identities=16% Similarity=0.229 Sum_probs=121.6
Q ss_pred CceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCC-----cceEEEEEcC
Q 018593 106 MGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDG-----TFKCLVFDSE 180 (353)
Q Consensus 106 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~-----~~~~~vy~s~ 180 (353)
.+++|.||--+.+|..+-.+..+.+ ...+..+ .-++ + .+..+|.. +. .+.. .....+|+..
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~p--Rsshq~v------a~~s--~-~l~~fGGE--fa-SPnq~qF~HYkD~W~fd~~ 162 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPP--RSSHQAV------AVPS--N-ILWLFGGE--FA-SPNQEQFHHYKDLWLFDLK 162 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCC--CccceeE------Eecc--C-eEEEeccc--cC-Ccchhhhhhhhheeeeeec
Confidence 4689999999999999744333210 2122221 1111 1 33333311 11 1111 2345689999
Q ss_pred CCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC---------CEEEEEECCCceEEEeeCCCC-CCCCCceeEEE
Q 018593 181 SNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC---------SFILALDLEGDVWRKISLPDK-VGSESRSYLLE 250 (353)
Q Consensus 181 ~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~---------~~i~~~D~~~~~~~~~~~P~~-~~~~~~~~l~~ 250 (353)
++.|..+.... .+..+..+.+|.....|...++-. .-+.+||+++=+|+.+..+.. .......++.+
T Consensus 163 trkweql~~~g---~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~v 239 (521)
T KOG1230|consen 163 TRKWEQLEFGG---GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSV 239 (521)
T ss_pred cchheeeccCC---CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEe
Confidence 99999884321 133455555666666665555422 569999999999999944331 11115566777
Q ss_pred E-CCEEEEEEe-c-----------CCeEEEEEEecCC----CCCeEEEEeeccc-cccCccceeeeeecCCcEEEEEeC-
Q 018593 251 C-DGCLSVIEI-S-----------DEWMETWVLKDYY----RDEWHSVDKVSLR-CIKGMVPSIFPISQTREYVFLATH- 311 (353)
Q Consensus 251 ~-~g~L~~v~~-~-----------~~~~~vw~l~~~~----~~~W~~~~~i~~~-~~~~~~~~~~~~~~~~~~v~~~~~- 311 (353)
. +|.+++-++ . ...-+.|.|+..+ ...|+++.....+ .... .-.+ +++.++..+++++-
T Consensus 240 tpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs-gfsv-~va~n~kal~FGGV~ 317 (521)
T KOG1230|consen 240 TPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS-GFSV-AVAKNHKALFFGGVC 317 (521)
T ss_pred cCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC-ceeE-EEecCCceEEeccee
Confidence 7 788888776 1 2456899996543 2678888777663 1111 1123 56777776777531
Q ss_pred --------------CcEEEEECCCCeEEEe
Q 018593 312 --------------KQVLVYHRNGRLWKEM 327 (353)
Q Consensus 312 --------------~~~~~yd~~~~~~~~v 327 (353)
+.++.||+..|+|...
T Consensus 318 D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 318 DLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred cccccchhhhhhhhhhhhheecccchhhHh
Confidence 2399999999999877
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.31 E-value=6.8e-05 Score=70.34 Aligned_cols=201 Identities=13% Similarity=0.140 Sum_probs=125.2
Q ss_pred eEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEEEe
Q 018593 108 VYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKF 187 (353)
Q Consensus 108 ~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~~ 187 (353)
.++++|-.+..|.........+.. ...+... +.+ -+++.+|.... .......+..||..|+.|+..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~-r~g~~~~---~~~-------~~l~lfGG~~~---~~~~~~~l~~~d~~t~~W~~l 154 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSP-RYGHSLS---AVG-------DKLYLFGGTDK---KYRNLNELHSLDLSTRTWSLL 154 (482)
T ss_pred eeEEeecCCcccccccccCCCCCc-ccceeEE---EEC-------CeEEEEccccC---CCCChhheEeccCCCCcEEEe
Confidence 599999999888876543332100 1111111 111 36666652110 011135788999999999998
Q ss_pred eeccccceeeeeecCceEEEcceEEeeecCC------CEEEEEECCCceEEEeeC----CCCCCCCCceeEEEECCEEEE
Q 018593 188 VSVQDYYQFSIMNRNQVVFVNGALHWLTDSC------SFILALDLEGDVWRKISL----PDKVGSESRSYLLECDGCLSV 257 (353)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~------~~i~~~D~~~~~~~~~~~----P~~~~~~~~~~l~~~~g~L~~ 257 (353)
....+. +..+..+..+.++.++|..++.. ..+.+||+.+.+|..+.. |..+ ....++..++++++
T Consensus 155 ~~~~~~--P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR---~gH~~~~~~~~~~v 229 (482)
T KOG0379|consen 155 SPTGDP--PPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR---YGHAMVVVGNKLLV 229 (482)
T ss_pred cCcCCC--CCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCC---CCceEEEECCeEEE
Confidence 554442 33455566788888899988865 679999999999999943 4433 56778888999999
Q ss_pred EEe-c-C--CeEEEEEEecCCCCCeEEEEeecc-ccccCccceeeeeecCCcEEEEEe--------CCcEEEEECCCCeE
Q 018593 258 IEI-S-D--EWMETWVLKDYYRDEWHSVDKVSL-RCIKGMVPSIFPISQTREYVFLAT--------HKQVLVYHRNGRLW 324 (353)
Q Consensus 258 v~~-~-~--~~~~vw~l~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~yd~~~~~~ 324 (353)
+.+ . . .--++|.|+- .+.+|.++...+. +.... .... . ..+..++++++ .+.++.||++++.|
T Consensus 230 ~gG~~~~~~~l~D~~~ldl-~~~~W~~~~~~g~~p~~R~-~h~~-~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w 305 (482)
T KOG0379|consen 230 FGGGDDGDVYLNDVHILDL-STWEWKLLPTGGDLPSPRS-GHSL-T-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVW 305 (482)
T ss_pred EeccccCCceecceEeeec-ccceeeeccccCCCCCCcc-eeee-E-EECCEEEEEcCCcccccccccccccccccccce
Confidence 987 2 2 2347998843 4478886544443 21111 1111 1 22444344432 23489999999999
Q ss_pred EEeeeec
Q 018593 325 KEMYSVK 331 (353)
Q Consensus 325 ~~v~~~~ 331 (353)
.++....
T Consensus 306 ~~~~~~~ 312 (482)
T KOG0379|consen 306 SKVESVG 312 (482)
T ss_pred eeeeccc
Confidence 9997665
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.28 E-value=1.5e-05 Score=65.80 Aligned_cols=110 Identities=15% Similarity=0.263 Sum_probs=82.8
Q ss_pred cceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC--------------CEEEEEECCCceEEEee-
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC--------------SFILALDLEGDVWRKIS- 235 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~--------------~~i~~~D~~~~~~~~~~- 235 (353)
...++++|..|.+|+...+..+ |..++..+.++.++|.+|..++.. ..|.++|++|+.|..-+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~--PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~ 233 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGD--PPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE 233 (392)
T ss_pred hccceeEeccceeeeehhccCC--CchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence 4567789999999999977544 567777788889999999998864 68999999999998762
Q ss_pred ---CCCCCCCCCceeEEEECCEEEEEEecC-----CeEEEEEEecCCCCCeEEEEeecc
Q 018593 236 ---LPDKVGSESRSYLLECDGCLSVIEISD-----EWMETWVLKDYYRDEWHSVDKVSL 286 (353)
Q Consensus 236 ---~P~~~~~~~~~~l~~~~g~L~~v~~~~-----~~~~vw~l~~~~~~~W~~~~~i~~ 286 (353)
.|... .....-+++|+++++++.. .--++|.+ +..+..|.++..-+-
T Consensus 234 ~~~~P~GR---RSHS~fvYng~~Y~FGGYng~ln~HfndLy~F-dP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 234 NTMKPGGR---RSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCF-DPKTSMWSVISVRGK 288 (392)
T ss_pred CCcCCCcc---cccceEEEcceEEEecccchhhhhhhcceeec-ccccchheeeeccCC
Confidence 23333 4566778999999998822 34468877 334478998765443
No 31
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.18 E-value=4.6e-05 Score=66.85 Aligned_cols=150 Identities=13% Similarity=0.254 Sum_probs=98.2
Q ss_pred eEEEEEcCCCcEEEeeeccccceeeeeecCceEEEc-ceEEeeecCC-----------CEEEEEECCCceEEEeeCCCCC
Q 018593 173 KCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVN-GALHWLTDSC-----------SFILALDLEGDVWRKISLPDKV 240 (353)
Q Consensus 173 ~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~-g~ly~~~~~~-----------~~i~~~D~~~~~~~~~~~P~~~ 240 (353)
..+.|+.++++|+.+.++. ++..+..+..|++- |.+|..++.. .-+-.||+.+++|+.+.++...
T Consensus 99 dLy~Yn~k~~eWkk~~spn---~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPN---APPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeeEEeccccceeEeccCC---CcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 5668999999999995532 23345556655555 7666666543 4588999999999999776654
Q ss_pred CCCCceeEEEECCEEEEEEe-cC------CeEEEEEEecCCCCCeEEEEeecc-ccccCccceeeeeecCCcEEEEEeCC
Q 018593 241 GSESRSYLLECDGCLSVIEI-SD------EWMETWVLKDYYRDEWHSVDKVSL-RCIKGMVPSIFPISQTREYVFLATHK 312 (353)
Q Consensus 241 ~~~~~~~l~~~~g~L~~v~~-~~------~~~~vw~l~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~~~~~~~v~~~~~~ 312 (353)
......+|+....+|.++++ .+ ---+||.+ +.++..|.++..-.. +.....++ + .+..+|.|++.+++.
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~F-dLdtykW~Klepsga~PtpRSGcq-~-~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAF-DLDTYKWSKLEPSGAGPTPRSGCQ-F-SVTPQGGIVVYGGYS 252 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEE-eccceeeeeccCCCCCCCCCCcce-E-EecCCCcEEEEcchh
Confidence 44367899999999999988 21 12367777 445588999876221 11111111 1 345466656555442
Q ss_pred ---------------cEEEEECCC-----CeEEEee
Q 018593 313 ---------------QVLVYHRNG-----RLWKEMY 328 (353)
Q Consensus 313 ---------------~~~~yd~~~-----~~~~~v~ 328 (353)
.+++.++++ -+|++|.
T Consensus 253 K~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk 288 (521)
T KOG1230|consen 253 KQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK 288 (521)
T ss_pred HhhhhhhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence 289999988 4566653
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.05 E-value=0.00012 Score=62.67 Aligned_cols=42 Identities=31% Similarity=0.546 Sum_probs=37.4
Q ss_pred CCCC----HHHHHHHHhcCCchhhhhhhccchhhhhhcCChHHHHH
Q 018593 2 GFFP----DEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRL 43 (353)
Q Consensus 2 ~~LP----~dll~~IL~rLp~~~l~r~r~Vck~W~~li~~~~F~~~ 43 (353)
..|| +++.+.||+.|...+|..+..|||+|+++++++..-+.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 4689 99999999999999999999999999999998764443
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.7e-05 Score=65.06 Aligned_cols=39 Identities=33% Similarity=0.576 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHhcCCchhhhhhhccchhhhhhcCChHH
Q 018593 2 GFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYF 40 (353)
Q Consensus 2 ~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~li~~~~F 40 (353)
..||||+++.||+.|+.++|+++..|||+|.++-+++..
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 369999999999999999999999999999999776654
No 34
>PF13964 Kelch_6: Kelch motif
Probab=97.24 E-value=0.0008 Score=41.62 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=32.1
Q ss_pred cCceEEEcceEEeeecCC------CEEEEEECCCceEEEe-eCCC
Q 018593 201 RNQVVFVNGALHWLTDSC------SFILALDLEGDVWRKI-SLPD 238 (353)
Q Consensus 201 ~~~~v~~~g~ly~~~~~~------~~i~~~D~~~~~~~~~-~~P~ 238 (353)
....|.++|.||.+++.. ..+..||+.+++|+.+ ++|.
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 345799999999999874 5799999999999998 5664
No 35
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.21 E-value=0.0059 Score=55.49 Aligned_cols=157 Identities=20% Similarity=0.338 Sum_probs=88.3
Q ss_pred ceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcE--
Q 018593 107 GVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRW-- 184 (353)
Q Consensus 107 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W-- 184 (353)
.++.|||.+|+||.. |.-... -+..++++ ||.+| +-+++++|.-- +-+.+.-+.|-+....|
T Consensus 57 DELHvYNTatnqWf~-PavrGD-----iPpgcAA~-Gfvcd----GtrilvFGGMv-----EYGkYsNdLYELQasRWeW 120 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGD-----IPPGCAAF-GFVCD----GTRILVFGGMV-----EYGKYSNDLYELQASRWEW 120 (830)
T ss_pred hhhhhhccccceeec-chhcCC-----CCCchhhc-ceEec----CceEEEEccEe-----eeccccchHHHhhhhhhhH
Confidence 589999999999984 322211 12334443 66654 45788875211 22345555677666655
Q ss_pred EEeeec--cccceeeeeecCceEEEcceEEeeecCC----------------CEEEEEECCCc--eEEEe----eCCCCC
Q 018593 185 RKFVSV--QDYYQFSIMNRNQVVFVNGALHWLTDSC----------------SFILALDLEGD--VWRKI----SLPDKV 240 (353)
Q Consensus 185 ~~~~~~--~~~~~~~~~~~~~~v~~~g~ly~~~~~~----------------~~i~~~D~~~~--~~~~~----~~P~~~ 240 (353)
+..... +.-+|...+..+.-+.++++-|.+++-. .+++-+-+..+ .|+.. .+|..+
T Consensus 121 krlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pR 200 (830)
T KOG4152|consen 121 KRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPR 200 (830)
T ss_pred hhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCc
Confidence 554211 1112445555666667778888887743 34555554454 36655 456665
Q ss_pred CCCCceeEE--EEC---CEEEEEEe-cCCeE-EEEEEecCCCCCeEEEE
Q 018593 241 GSESRSYLL--ECD---GCLSVIEI-SDEWM-ETWVLKDYYRDEWHSVD 282 (353)
Q Consensus 241 ~~~~~~~l~--~~~---g~L~~v~~-~~~~~-~vw~l~~~~~~~W~~~~ 282 (353)
+. +..+. +.+ .++++.++ .+.++ ++|.| +.++-.|.+..
T Consensus 201 ES--HTAViY~eKDs~~skmvvyGGM~G~RLgDLW~L-dl~Tl~W~kp~ 246 (830)
T KOG4152|consen 201 ES--HTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTL-DLDTLTWNKPS 246 (830)
T ss_pred cc--ceeEEEEeccCCcceEEEEcccccccccceeEE-ecceeeccccc
Confidence 43 22222 223 25666555 33333 79999 55668898854
No 36
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.97 E-value=0.00044 Score=58.89 Aligned_cols=45 Identities=29% Similarity=0.453 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHhcCC-----chhhhhhhccchhhhhhcCChHHHHHHh
Q 018593 1 MGFFPDEVIQQILARLP-----VKSLFRTKTVCKLWNKLTSDKYFIRLYN 45 (353)
Q Consensus 1 ~~~LP~dll~~IL~rLp-----~~~l~r~r~Vck~W~~li~~~~F~~~~~ 45 (353)
|..||||+|.+||.++- +.+|.++++|||.|+-...+|.|.+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 45799999999998765 4999999999999999999998877543
No 37
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.91 E-value=0.22 Score=42.43 Aligned_cols=202 Identities=15% Similarity=0.153 Sum_probs=107.5
Q ss_pred eeecCeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCC
Q 018593 91 RASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDG 170 (353)
Q Consensus 91 ~~s~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 170 (353)
.+..+|-+++.. ....+++.++|.+++...+..+. + . ++.++...+ +++...
T Consensus 7 ~d~~~g~l~~~D-~~~~~i~~~~~~~~~~~~~~~~~-~----------~---G~~~~~~~g--~l~v~~----------- 58 (246)
T PF08450_consen 7 WDPRDGRLYWVD-IPGGRIYRVDPDTGEVEVIDLPG-P----------N---GMAFDRPDG--RLYVAD----------- 58 (246)
T ss_dssp EETTTTEEEEEE-TTTTEEEEEETTTTEEEEEESSS-E----------E---EEEEECTTS--EEEEEE-----------
T ss_pred EECCCCEEEEEE-cCCCEEEEEECCCCeEEEEecCC-C----------c---eEEEEccCC--EEEEEE-----------
Confidence 344467777765 45678999999999876544332 1 1 566663222 333321
Q ss_pred cceEEEEEcCCCcEEEeeeccccce-eeeeecCceEEEcceEEeeecCC--------CEEEEEECCCceEEEeeCCCCCC
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDYYQ-FSIMNRNQVVFVNGALHWLTDSC--------SFILALDLEGDVWRKISLPDKVG 241 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~~~-~~~~~~~~~v~~~g~ly~~~~~~--------~~i~~~D~~~~~~~~~~~P~~~~ 241 (353)
.....+++..+++++.......- . ...+...-.+--+|.+|+-.... ..+..+|+. ++...+.-...
T Consensus 59 ~~~~~~~d~~~g~~~~~~~~~~~-~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~-- 134 (246)
T PF08450_consen 59 SGGIAVVDPDTGKVTVLADLPDG-GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG-- 134 (246)
T ss_dssp TTCEEEEETTTTEEEEEEEEETT-CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES--
T ss_pred cCceEEEecCCCcEEEEeeccCC-CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc--
Confidence 33456779999999877433111 1 12222222455578877765543 258999999 55554421111
Q ss_pred CCCceeEEEE-CCE-EEEEEecCCeEEEEEEecCCC-CCeEEEEee-ccccccCccceeeeeecCCcEEEEE--eCCcEE
Q 018593 242 SESRSYLLEC-DGC-LSVIEISDEWMETWVLKDYYR-DEWHSVDKV-SLRCIKGMVPSIFPISQTREYVFLA--THKQVL 315 (353)
Q Consensus 242 ~~~~~~l~~~-~g~-L~~v~~~~~~~~vw~l~~~~~-~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~ 315 (353)
...-|+.. +|+ |+++...... ||.++-... ..+.....+ ..+........+ +++.+|. |++. ..+.+.
T Consensus 135 --~pNGi~~s~dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~-~vD~~G~-l~va~~~~~~I~ 208 (246)
T PF08450_consen 135 --FPNGIAFSPDGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGL-AVDSDGN-LWVADWGGGRIV 208 (246)
T ss_dssp --SEEEEEEETTSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEE-EEBTTS--EEEEEETTTEEE
T ss_pred --cccceEECCcchheeecccccce--eEEEeccccccceeeeeeEEEcCCCCcCCCcc-eEcCCCC-EEEEEcCCCEEE
Confidence 11233333 454 5555444555 555532221 345544333 222222334566 8888898 5555 345699
Q ss_pred EEECCCCeEEEeeeec
Q 018593 316 VYHRNGRLWKEMYSVK 331 (353)
Q Consensus 316 ~yd~~~~~~~~v~~~~ 331 (353)
.||++.+....+ .+.
T Consensus 209 ~~~p~G~~~~~i-~~p 223 (246)
T PF08450_consen 209 VFDPDGKLLREI-ELP 223 (246)
T ss_dssp EEETTSCEEEEE-E-S
T ss_pred EECCCccEEEEE-cCC
Confidence 999996555555 444
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.75 E-value=0.0027 Score=38.57 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=31.5
Q ss_pred cCceEEEcceEEeeecCC------CEEEEEECCCceEEEe-eCC
Q 018593 201 RNQVVFVNGALHWLTDSC------SFILALDLEGDVWRKI-SLP 237 (353)
Q Consensus 201 ~~~~v~~~g~ly~~~~~~------~~i~~~D~~~~~~~~~-~~P 237 (353)
....+.+++.||.+++.. ..+..||+.+++|+.+ +||
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 345889999999998864 6899999999999998 565
No 39
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=96.67 E-value=0.046 Score=46.09 Aligned_cols=153 Identities=12% Similarity=0.141 Sum_probs=90.9
Q ss_pred cceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC---CEEEEEECCC----ceEEEeeCCCCCCC-
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC---SFILALDLEG----DVWRKISLPDKVGS- 242 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~---~~i~~~D~~~----~~~~~~~~P~~~~~- 242 (353)
.....+||..+++++.. .. ....+.....+.-||.+.-.++.. ..+-.|++.+ ..|... +.....
T Consensus 45 ~a~s~~yD~~tn~~rpl---~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~--~~~m~~~ 117 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPL---TV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTES--PNDMQSG 117 (243)
T ss_pred eEEEEEEecCCCcEEec---cC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceEC--cccccCC
Confidence 44566999999999988 32 244455566777788888777653 5677888876 557654 211111
Q ss_pred CCceeEEE-ECCEEEEEEe-cCCeEEEEEEecCCC--CCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCcEEEEE
Q 018593 243 ESRSYLLE-CDGCLSVIEI-SDEWMETWVLKDYYR--DEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYH 318 (353)
Q Consensus 243 ~~~~~l~~-~~g~L~~v~~-~~~~~~vw~l~~~~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd 318 (353)
.+...... -+|++.++++ .....+.|--..... ..|..............+..+ .+..+|+ +|+....+-..||
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~-~llPdG~-lFi~an~~s~i~d 195 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFV-HLLPDGN-LFIFANRGSIIYD 195 (243)
T ss_pred CccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceE-EEcCCCC-EEEEEcCCcEEEe
Confidence 13344444 4699999988 444445542211111 112111111111223334445 7788999 6666667788889
Q ss_pred CCCCeE-EEeeeecc
Q 018593 319 RNGRLW-KEMYSVKY 332 (353)
Q Consensus 319 ~~~~~~-~~v~~~~~ 332 (353)
.+++++ +.++.+.+
T Consensus 196 ~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 196 YKTNTVVRTLPDLPG 210 (243)
T ss_pred CCCCeEEeeCCCCCC
Confidence 999977 67777765
No 40
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.039 Score=48.22 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=74.1
Q ss_pred ceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcc-eEEeeecCC--------------------------------
Q 018593 172 FKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNG-ALHWLTDSC-------------------------------- 218 (353)
Q Consensus 172 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g-~ly~~~~~~-------------------------------- 218 (353)
..++.|++.+++|....+.. |.. ......+..++ .+|+.++-.
T Consensus 113 nd~Y~y~p~~nsW~kl~t~s---P~g-l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~ 188 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRS---PTG-LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK 188 (381)
T ss_pred eeeEEecCCCChhheecccc---ccc-cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCC
Confidence 46778999999999884322 334 33444566666 788887642
Q ss_pred -------CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEe----cCCeEEEEEEecC-CCCCeEEEEeec
Q 018593 219 -------SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEI----SDEWMETWVLKDY-YRDEWHSVDKVS 285 (353)
Q Consensus 219 -------~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~----~~~~~~vw~l~~~-~~~~W~~~~~i~ 285 (353)
..+++||+.+++|+.. ..|.... +...++--+++|.++.+ .-+.-++++.+-. +..+|.++..+|
T Consensus 189 ~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~--aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp 266 (381)
T COG3055 189 AEDYFFNKEVLSYDPSTNQWRNLGENPFYGN--AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLP 266 (381)
T ss_pred HHHhcccccccccccccchhhhcCcCcccCc--cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCC
Confidence 5699999999999998 5676543 23344445667888877 2245566665433 237899998777
Q ss_pred cc
Q 018593 286 LR 287 (353)
Q Consensus 286 ~~ 287 (353)
.+
T Consensus 267 ~~ 268 (381)
T COG3055 267 AP 268 (381)
T ss_pred CC
Confidence 63
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.09 E-value=1.1 Score=42.82 Aligned_cols=42 Identities=31% Similarity=0.592 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHhcCCchhhhhhhccchhhhhhcCChHHHH
Q 018593 1 MGFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIR 42 (353)
Q Consensus 1 ~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~li~~~~F~~ 42 (353)
+..||.++...||..|+.++++++++||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 357999999999999999999999999999999998655544
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=95.98 E-value=0.02 Score=35.09 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=30.0
Q ss_pred cCceEEEcceEEeeecC--C------CEEEEEECCCceEEEee
Q 018593 201 RNQVVFVNGALHWLTDS--C------SFILALDLEGDVWRKIS 235 (353)
Q Consensus 201 ~~~~v~~~g~ly~~~~~--~------~~i~~~D~~~~~~~~~~ 235 (353)
.+..+..+++||.+++. . ..+..||+.+++|+.++
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 44578999999999988 1 67999999999999873
No 43
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.72 E-value=0.29 Score=41.50 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=79.5
Q ss_pred EeeecCeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCC
Q 018593 90 VRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPD 169 (353)
Q Consensus 90 ~~~s~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 169 (353)
+++.-+|-+.+.. -..+.+...||.++.-..+|++... ..... ....|+.. + +.+. ..
T Consensus 194 i~atpdGsvwyas-lagnaiaridp~~~~aev~p~P~~~------~~gsR---riwsdpig---~-~wit--------tw 251 (353)
T COG4257 194 ICATPDGSVWYAS-LAGNAIARIDPFAGHAEVVPQPNAL------KAGSR---RIWSDPIG---R-AWIT--------TW 251 (353)
T ss_pred eEECCCCcEEEEe-ccccceEEcccccCCcceecCCCcc------ccccc---ccccCccC---c-EEEe--------cc
Confidence 3444445454442 2345667789999987778777642 01111 23333322 1 1221 23
Q ss_pred CcceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcc-eEEeeecC-CCEEEEEECCCceEEEeeCCCCCCCCCcee
Q 018593 170 GTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNG-ALHWLTDS-CSFILALDLEGDVWRKISLPDKVGSESRSY 247 (353)
Q Consensus 170 ~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g-~ly~~~~~-~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~ 247 (353)
+.-.+..|+..+.+|.+-..+ .... ...+.++|. -.-|+..- ...|..||+++++|++++.|.... .+..
T Consensus 252 g~g~l~rfdPs~~sW~eypLP----gs~a--rpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~n~--gn~q 323 (353)
T COG4257 252 GTGSLHRFDPSVTSWIEYPLP----GSKA--RPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRPNS--GNIQ 323 (353)
T ss_pred CCceeeEeCcccccceeeeCC----CCCC--CcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCCCC--Ccee
Confidence 356788999999999988322 1111 122344432 24455332 269999999999999998876542 2444
Q ss_pred EEEECCEEEEEEe
Q 018593 248 LLECDGCLSVIEI 260 (353)
Q Consensus 248 l~~~~g~L~~v~~ 260 (353)
|.-..|+|.....
T Consensus 324 l~gr~ge~W~~e~ 336 (353)
T COG4257 324 LDGRPGELWFTEA 336 (353)
T ss_pred ccCCCCceeeccc
Confidence 5445566665443
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=95.50 E-value=0.052 Score=32.74 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=24.2
Q ss_pred eecCCcEEEEEeCCc-------EEEEECCCCeEEEeeee
Q 018593 299 ISQTREYVFLATHKQ-------VLVYHRNGRLWKEMYSV 330 (353)
Q Consensus 299 ~~~~~~~v~~~~~~~-------~~~yd~~~~~~~~v~~~ 330 (353)
+..++.++++++... +..||+++++|+.+..+
T Consensus 8 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 8 VVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred EEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 344777666765422 99999999999999765
No 45
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.39 E-value=1.4 Score=37.00 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=96.1
Q ss_pred cCeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcce
Q 018593 94 CNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFK 173 (353)
Q Consensus 94 ~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 173 (353)
.+|.+++. .....++.+|+.||+...--..+.+ ... .. .. .+-+|++.. . ...
T Consensus 35 ~~~~v~~~--~~~~~l~~~d~~tG~~~W~~~~~~~----~~~--~~----~~-----~~~~v~v~~--------~--~~~ 87 (238)
T PF13360_consen 35 DGGRVYVA--SGDGNLYALDAKTGKVLWRFDLPGP----ISG--AP----VV-----DGGRVYVGT--------S--DGS 87 (238)
T ss_dssp ETTEEEEE--ETTSEEEEEETTTSEEEEEEECSSC----GGS--GE----EE-----ETTEEEEEE--------T--TSE
T ss_pred eCCEEEEE--cCCCEEEEEECCCCCEEEEeecccc----ccc--ee----ee-----ccccccccc--------c--eee
Confidence 56777776 3678899999999985543333222 100 00 00 112344331 1 226
Q ss_pred EEEEEcCCC--cEEE-eeeccccceeeeeecCceEEEcceEEeeecCCCEEEEEECCCce--EEEe-eCCCCCCC-----
Q 018593 174 CLVFDSESN--RWRK-FVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDV--WRKI-SLPDKVGS----- 242 (353)
Q Consensus 174 ~~vy~s~~~--~W~~-~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~--~~~~-~~P~~~~~----- 242 (353)
+..+|.++| .|+. ....+ +............++.+|...... .+.++|+.+++ |+.- ..|.....
T Consensus 88 l~~~d~~tG~~~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYLTSSP---PAGVRSSSSPAVDGDRLYVGTSSG-KLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp EEEEETTTSCEEEEEEE-SSC---TCSTB--SEEEEETTEEEEEETCS-EEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred eEecccCCcceeeeecccccc---ccccccccCceEecCEEEEEeccC-cEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 777886665 6984 42111 112222233444467777777664 99999999875 4442 23322110
Q ss_pred CCceeEEEECCEEEEEEecCCeEEEEEEecCCC--CCeEEEEeeccccccCccceeeeeecCCcEEEEEe-CCcEEEEEC
Q 018593 243 ESRSYLLECDGCLSVIEISDEWMETWVLKDYYR--DEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLAT-HKQVLVYHR 319 (353)
Q Consensus 243 ~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~yd~ 319 (353)
.....++..+|.+++....+. +-.+ +..+ ..|... +. .. .. .....++.+++.. .+.++.+|+
T Consensus 164 ~~~~~~~~~~~~v~~~~~~g~---~~~~-d~~tg~~~w~~~--~~--~~----~~--~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 164 DINGSPVISDGRVYVSSGDGR---VVAV-DLATGEKLWSKP--IS--GI----YS--LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp TEEEEEECCTTEEEEECCTSS---EEEE-ETTTTEEEEEEC--SS---E----CE--CEECCCTEEEEEETTTEEEEEET
T ss_pred ccccceEEECCEEEEEcCCCe---EEEE-ECCCCCEEEEec--CC--Cc----cC--CceeeCCEEEEEeCCCEEEEEEC
Confidence 012344445676666554443 2233 3222 236221 21 11 11 1233455577666 566999999
Q ss_pred CCCeEEE
Q 018593 320 NGRLWKE 326 (353)
Q Consensus 320 ~~~~~~~ 326 (353)
+|++..+
T Consensus 230 ~tG~~~W 236 (238)
T PF13360_consen 230 KTGKVVW 236 (238)
T ss_dssp TTTEEEE
T ss_pred CCCCEEe
Confidence 9998765
No 46
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.20 E-value=0.72 Score=41.47 Aligned_cols=117 Identities=10% Similarity=0.129 Sum_probs=69.3
Q ss_pred EcceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEEECCEEEEEEe---c--CC-----eEEEEEEec----
Q 018593 207 VNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEI---S--DE-----WMETWVLKD---- 272 (353)
Q Consensus 207 ~~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~---~--~~-----~~~vw~l~~---- 272 (353)
.+.+|..+...+ ..+.||.++..... +|...........+..+|+||+... . .. .+++-....
T Consensus 75 ~gskIv~~d~~~-~t~vyDt~t~av~~--~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~ 151 (342)
T PF07893_consen 75 HGSKIVAVDQSG-RTLVYDTDTRAVAT--GPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD 151 (342)
T ss_pred cCCeEEEEcCCC-CeEEEECCCCeEec--cCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence 366677776664 79999999998774 4443322233445556889999876 1 11 666654431
Q ss_pred -CCC--CCeEEEEeeccccccCc----cceeeeeecCCcEEEEEeCC---cEEEEECCCCeEEEee
Q 018593 273 -YYR--DEWHSVDKVSLRCIKGM----VPSIFPISQTREYVFLATHK---QVLVYHRNGRLWKEMY 328 (353)
Q Consensus 273 -~~~--~~W~~~~~i~~~~~~~~----~~~~~~~~~~~~~v~~~~~~---~~~~yd~~~~~~~~v~ 328 (353)
... ..|..+-.-|....... +... ++. +|..|++...+ ..+.||.++.+|+++.
T Consensus 152 ~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sY-avv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 152 PSPEESWSWRSLPPPPFVRDRRYSDYRITSY-AVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccCCCcceEEcCCCCCccccCCcccceEEEE-EEe-cCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 112 45555322111111110 2233 444 67778886654 4999999999999984
No 47
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.14 E-value=2.6 Score=38.72 Aligned_cols=129 Identities=14% Similarity=0.161 Sum_probs=68.4
Q ss_pred CceEEEcceEEeeecCCCEEEEEECCCce--EEEeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecC-CCCCe
Q 018593 202 NQVVFVNGALHWLTDSCSFILALDLEGDV--WRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDY-YRDEW 278 (353)
Q Consensus 202 ~~~v~~~g~ly~~~~~~~~i~~~D~~~~~--~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~-~~~~W 278 (353)
..++..+|.+|..+..+ .+.++|+.+++ |+. +.+. ...++..+|+|+++..++ . +..++-. +...|
T Consensus 250 ~sP~v~~~~vy~~~~~g-~l~ald~~tG~~~W~~-~~~~------~~~~~~~~~~vy~~~~~g-~--l~ald~~tG~~~W 318 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG-NLVALDLRSGQIVWKR-EYGS------VNDFAVDGGRIYLVDQND-R--VYALDTRGGVELW 318 (394)
T ss_pred CCcEEECCEEEEEEcCC-eEEEEECCCCCEEEee-cCCC------ccCcEEECCEEEEEcCCC-e--EEEEECCCCcEEE
Confidence 34778899999988765 99999998764 654 2211 112345567777665322 2 2233221 22445
Q ss_pred EEEEeeccccccCccceeeeeecCCcEEEEEeCCcEEEEECCCCeEEEeeeecc--CccccceEEEeeeeee
Q 018593 279 HSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKY--GSTLPLWFSAHAFRST 348 (353)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~s 348 (353)
.... +. . .....+. ..++.+++....+.++.+|.++++...-..+.+ ....|.....+.|+.+
T Consensus 319 ~~~~-~~--~-~~~~sp~---v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 319 SQSD-LL--H-RLLTAPV---LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQA 383 (394)
T ss_pred cccc-cC--C-CcccCCE---EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEe
Confidence 4311 00 0 0111222 225664444445569999999987665544422 1233445555666653
No 48
>PF13964 Kelch_6: Kelch motif
Probab=95.10 E-value=0.053 Score=33.29 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCceEEEEcccccceeeccCCCCC
Q 018593 105 EMGVYYVCNPMTREWKLLPKSRER 128 (353)
Q Consensus 105 ~~~~~~v~NP~t~~~~~LP~~~~~ 128 (353)
..+.+.++||.|++|..+|+++.+
T Consensus 26 ~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 26 YSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred ccccEEEEcCCCCcEEECCCCCCC
Confidence 357899999999999999998865
No 49
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.91 E-value=1.7 Score=37.06 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=75.1
Q ss_pred eecCceEEEcceEEeeecCCCEEEEEECCCceEE-EeeCCCCCCCC---------CceeEEEECCEEEEEEe--c-CCeE
Q 018593 199 MNRNQVVFVNGALHWLTDSCSFILALDLEGDVWR-KISLPDKVGSE---------SRSYLLECDGCLSVIEI--S-DEWM 265 (353)
Q Consensus 199 ~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~~~-~~~~P~~~~~~---------~~~~l~~~~g~L~~v~~--~-~~~~ 265 (353)
..+...|+.||.+|+-......|+.||+.+++-. ...+|...... ....+++-+..|.++-. + +..+
T Consensus 69 ~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~i 148 (250)
T PF02191_consen 69 WQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNI 148 (250)
T ss_pred eccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcE
Confidence 3445578899999999887679999999999988 66888654321 34667777778888766 2 3357
Q ss_pred EEEEEecCCC---CCeEEEEeeccccccCccceeeeeecCCcEEEEEeCC----c-EEEEECCCCeEEEe
Q 018593 266 ETWVLKDYYR---DEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHK----Q-VLVYHRNGRLWKEM 327 (353)
Q Consensus 266 ~vw~l~~~~~---~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~-~~~yd~~~~~~~~v 327 (353)
.|-.|+...- ..|..- .+-+..... +---|.++.+.... + .+.||+.+++-+.+
T Consensus 149 vvskld~~tL~v~~tw~T~--~~k~~~~na------FmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~ 210 (250)
T PF02191_consen 149 VVSKLDPETLSVEQTWNTS--YPKRSAGNA------FMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV 210 (250)
T ss_pred EEEeeCcccCceEEEEEec--cCchhhcce------eeEeeEEEEEEECCCCCcEEEEEEECCCCceece
Confidence 7777754321 345432 111122211 11124434444433 1 68999998877655
No 50
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=94.89 E-value=0.055 Score=33.00 Aligned_cols=37 Identities=16% Similarity=0.429 Sum_probs=23.0
Q ss_pred cCceEEE-cceEEeeecCC------CEEEEEECCCceEEEe-eCC
Q 018593 201 RNQVVFV-NGALHWLTDSC------SFILALDLEGDVWRKI-SLP 237 (353)
Q Consensus 201 ~~~~v~~-~g~ly~~~~~~------~~i~~~D~~~~~~~~~-~~P 237 (353)
.+..+.+ ++.+|..++.. ..+..||+.+++|+.+ ++|
T Consensus 4 ~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp S-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred eEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 3445556 47888887754 4689999999999998 444
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.70 E-value=1.2 Score=40.57 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=79.8
Q ss_pred cceEEEEEcCCCcEEE-eeeccccceeeeeecCceEEEcceEEeeecCCCEEEEEECCCceE-EEe---eCCCCCCCCCc
Q 018593 171 TFKCLVFDSESNRWRK-FVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVW-RKI---SLPDKVGSESR 245 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~-~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~~-~~~---~~P~~~~~~~~ 245 (353)
..++.+|++.+.+=+. ...+.+. -....+-.||.+...+....-+-.||+.+... ..+ ..|...
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~------v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~----- 115 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDV------VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHV----- 115 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccc------eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeE-----
Confidence 5689999988753322 1111111 11123445699999888767899999666321 111 233222
Q ss_pred eeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCeE
Q 018593 246 SYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRLW 324 (353)
Q Consensus 246 ~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~ 324 (353)
.+....++.+.+.+.++....+|.+.. .. + +..+.+...+++-..+...++.+++.+++.. +-+||.++.+
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~---a~---v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~- 187 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDLST---AY---V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT- 187 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEcCC---cE---E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-
Confidence 233334555555555888899997744 22 2 3344444444444423444676666666655 9999999986
Q ss_pred EEeeee
Q 018593 325 KEMYSV 330 (353)
Q Consensus 325 ~~v~~~ 330 (353)
.++..+
T Consensus 188 ~~v~el 193 (487)
T KOG0310|consen 188 SRVVEL 193 (487)
T ss_pred ceeEEe
Confidence 444444
No 52
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.48 E-value=2.1 Score=38.62 Aligned_cols=128 Identities=14% Similarity=0.237 Sum_probs=77.7
Q ss_pred cceEEee-ecCCCEEEEEECCCce--EEE---eeCCCCCCCCCceeEEEE-CC-EEEEEEecCCeEEEEEEecCCCCCeE
Q 018593 208 NGALHWL-TDSCSFILALDLEGDV--WRK---ISLPDKVGSESRSYLLEC-DG-CLSVIEISDEWMETWVLKDYYRDEWH 279 (353)
Q Consensus 208 ~g~ly~~-~~~~~~i~~~D~~~~~--~~~---~~~P~~~~~~~~~~l~~~-~g-~L~~v~~~~~~~~vw~l~~~~~~~W~ 279 (353)
+|...++ ......|..|+...+. ... +.+|... ..+.++.. +| .+|++......+.++.++... ..+.
T Consensus 154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~---GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~ 229 (345)
T PF10282_consen 154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS---GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLT 229 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS---SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEE
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC---CCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-Ccee
Confidence 3554444 3333689999988766 544 3566655 34555554 34 556665577889999886322 5777
Q ss_pred EEEeecc-c-ccc--CccceeeeeecCCcEEEEEeCCc--EEEEEC--CCCeEEEeeeeccCccccceE
Q 018593 280 SVDKVSL-R-CIK--GMVPSIFPISQTREYVFLATHKQ--VLVYHR--NGRLWKEMYSVKYGSTLPLWF 340 (353)
Q Consensus 280 ~~~~i~~-~-~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~yd~--~~~~~~~v~~~~~~~~~~~~~ 340 (353)
.+..++. + ... .....+ .+..+|+.+|+...+. |..|++ ++++++.+..+...+..|.-+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~i-~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~ 297 (345)
T PF10282_consen 230 EIQTISTLPEGFTGENAPAEI-AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHF 297 (345)
T ss_dssp EEEEEESCETTSCSSSSEEEE-EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEE
T ss_pred EEEEeeeccccccccCCceeE-EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEE
Confidence 7777765 2 221 133455 6788999888876443 777776 667888887776545555543
No 53
>smart00284 OLF Olfactomedin-like domains.
Probab=94.43 E-value=1.9 Score=36.72 Aligned_cols=74 Identities=22% Similarity=0.085 Sum_probs=53.5
Q ss_pred eecCceEEEcceEEeeecCCCEEEEEECCCceEEEe-eCCCCC-CC--------CCceeEEEECCEEEEEEe---cCCeE
Q 018593 199 MNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKI-SLPDKV-GS--------ESRSYLLECDGCLSVIEI---SDEWM 265 (353)
Q Consensus 199 ~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~-~~P~~~-~~--------~~~~~l~~~~g~L~~v~~---~~~~~ 265 (353)
......|+.||.+|+-......|+.||+.+++.... .+|... .. ....-+++-+..|.++-. .+..+
T Consensus 74 ~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i 153 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI 153 (255)
T ss_pred cccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE
Confidence 344558999999999876657899999999998644 577532 11 044678888888888865 34678
Q ss_pred EEEEEec
Q 018593 266 ETWVLKD 272 (353)
Q Consensus 266 ~vw~l~~ 272 (353)
.|-+|+.
T Consensus 154 vvSkLnp 160 (255)
T smart00284 154 VISKLNP 160 (255)
T ss_pred EEEeeCc
Confidence 8888854
No 54
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.15 E-value=2.3 Score=36.04 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=68.7
Q ss_pred eEEE--cceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEE
Q 018593 204 VVFV--NGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSV 281 (353)
Q Consensus 204 ~v~~--~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~ 281 (353)
+++. +|.+||.......|..+|+.+++.+.+..|... ...+...+|+|+++.. ..+.+. +.+..+++.+
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~----G~~~~~~~g~l~v~~~--~~~~~~---d~~~g~~~~~ 75 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPN----GMAFDRPDGRLYVADS--GGIAVV---DPDTGKVTVL 75 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEE----EEEEECTTSEEEEEET--TCEEEE---ETTTTEEEEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCc----eEEEEccCCEEEEEEc--CceEEE---ecCCCcEEEE
Confidence 3444 689999988777999999999999888887622 2222223578877654 223333 4444678877
Q ss_pred Eeecccc-ccCccceeeeeecCCcEEEEEeC----------CcEEEEECCCCeEEEee
Q 018593 282 DKVSLRC-IKGMVPSIFPISQTREYVFLATH----------KQVLVYHRNGRLWKEMY 328 (353)
Q Consensus 282 ~~i~~~~-~~~~~~~~~~~~~~~~~v~~~~~----------~~~~~yd~~~~~~~~v~ 328 (353)
...+... .......+ .+..+|. +++... +.++.++++ ++.+.+.
T Consensus 76 ~~~~~~~~~~~~~ND~-~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDV-AVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp EEEETTCSCTEEEEEE-EE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred eeccCCCcccCCCceE-EEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 7774311 11112234 6677888 444432 338888988 6666654
No 55
>smart00612 Kelch Kelch domain.
Probab=94.02 E-value=0.15 Score=30.36 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=21.6
Q ss_pred CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEEC
Q 018593 219 SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECD 252 (353)
Q Consensus 219 ~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~ 252 (353)
..+..||+.+++|+.+ ++|... ....++..+
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~r---~~~~~~~~~ 46 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTPR---SGHGVAVIN 46 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCcc---ccceEEEeC
Confidence 4788999999999987 566554 334444444
No 56
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.38 E-value=5.8 Score=35.72 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=84.0
Q ss_pred cceEEEEEcCCCc--EEEeeeccccceeeeeecCceEEE-cc-eEEeeecCCCEEEEEECC--CceEEEe----eCCCCC
Q 018593 171 TFKCLVFDSESNR--WRKFVSVQDYYQFSIMNRNQVVFV-NG-ALHWLTDSCSFILALDLE--GDVWRKI----SLPDKV 240 (353)
Q Consensus 171 ~~~~~vy~s~~~~--W~~~~~~~~~~~~~~~~~~~~v~~-~g-~ly~~~~~~~~i~~~D~~--~~~~~~~----~~P~~~ 240 (353)
..++.+|+...+. ........ . +.+.. ....++. +| .+|.+.+....|.+|+.. +..++.+ .+|...
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~-~-~~G~G-PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIK-V-PPGSG-PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEE-C-STTSS-EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred CCEEEEEEEeCCCceEEEeeccc-c-ccCCC-CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 5678888877654 54431111 1 11100 1111222 44 577777766678888777 6677666 344433
Q ss_pred CCC-CceeEEEE-CCEE-EEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc----
Q 018593 241 GSE-SRSYLLEC-DGCL-SVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ---- 313 (353)
Q Consensus 241 ~~~-~~~~l~~~-~g~L-~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 313 (353)
... ....+... +|+. |+.....+.+.++.++..+ ..-+.+..++..+. ..+.+ .+..+|+.+++.....
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~-g~l~~~~~~~~~G~--~Pr~~-~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT-GTLTLVQTVPTGGK--FPRHF-AFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT-TTEEEEEEEEESSS--SEEEE-EE-TTSSEEEEEETTTTEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC-CceEEEEEEeCCCC--CccEE-EEeCCCCEEEEEecCCCeEE
Confidence 221 23445444 4654 4444478899999885432 45566666664221 12345 7778899787776443
Q ss_pred EEEEECCCCeEEEeee
Q 018593 314 VLVYHRNGRLWKEMYS 329 (353)
Q Consensus 314 ~~~yd~~~~~~~~v~~ 329 (353)
++..|.++++++.+..
T Consensus 318 vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 318 VFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCcEEEecc
Confidence 4455778999998864
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.93 E-value=4.9 Score=33.62 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=78.7
Q ss_pred eEEEEEcCCC--cEEEeeeccccceeeeeecCceEEEcceEEeeecCCCEEEEEECCCce--EEEeeCCCCCCCCCceeE
Q 018593 173 KCLVFDSESN--RWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDV--WRKISLPDKVGSESRSYL 248 (353)
Q Consensus 173 ~~~vy~s~~~--~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~--~~~~~~P~~~~~~~~~~l 248 (353)
.+..+|..+| .|+.. ... +.. ......+..+|.+|...... .+.++|..+++ |+. .++... ... .
T Consensus 4 ~l~~~d~~tG~~~W~~~---~~~-~~~-~~~~~~~~~~~~v~~~~~~~-~l~~~d~~tG~~~W~~-~~~~~~---~~~-~ 72 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD---LGP-GIG-GPVATAVPDGGRVYVASGDG-NLYALDAKTGKVLWRF-DLPGPI---SGA-P 72 (238)
T ss_dssp EEEEEETTTTEEEEEEE---CSS-SCS-SEEETEEEETTEEEEEETTS-EEEEEETTTSEEEEEE-ECSSCG---GSG-E
T ss_pred EEEEEECCCCCEEEEEE---CCC-CCC-CccceEEEeCCEEEEEcCCC-EEEEEECCCCCEEEEe-eccccc---cce-e
Confidence 4567777665 58775 211 000 00111445788888886664 99999997765 443 344443 122 3
Q ss_pred EEECCEEEEEEecCCeEEEEEEe-cCCCCCeEE-EEeeccccccCccceeeeeecCCcEEEEEe-CCcEEEEECCCCeEE
Q 018593 249 LECDGCLSVIEISDEWMETWVLK-DYYRDEWHS-VDKVSLRCIKGMVPSIFPISQTREYVFLAT-HKQVLVYHRNGRLWK 325 (353)
Q Consensus 249 ~~~~g~L~~v~~~~~~~~vw~l~-~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~yd~~~~~~~ 325 (353)
...++++++...++ .++.++ +.++..|.. ...-+..... .... ... .++.+++.. .+.++.+|+++++..
T Consensus 73 ~~~~~~v~v~~~~~---~l~~~d~~tG~~~W~~~~~~~~~~~~~--~~~~-~~~-~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 73 VVDGGRVYVGTSDG---SLYALDAKTGKVLWSIYLTSSPPAGVR--SSSS-PAV-DGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEETTEEEEEETTS---EEEEEETTTSCEEEEEEE-SSCTCSTB----SE-EEE-ETTEEEEEETCSEEEEEETTTTEEE
T ss_pred eeccccccccccee---eeEecccCCcceeeeeccccccccccc--cccC-ceE-ecCEEEEEeccCcEEEEecCCCcEE
Confidence 67788887776433 566665 444477884 3332221111 1111 111 244466665 677999999999876
Q ss_pred Eeeeec
Q 018593 326 EMYSVK 331 (353)
Q Consensus 326 ~v~~~~ 331 (353)
+-...+
T Consensus 146 w~~~~~ 151 (238)
T PF13360_consen 146 WKYPVG 151 (238)
T ss_dssp EEEESS
T ss_pred EEeecC
Confidence 655553
No 58
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=92.82 E-value=0.17 Score=30.74 Aligned_cols=28 Identities=4% Similarity=0.264 Sum_probs=16.8
Q ss_pred cCCcEEEEEeC-------CcEEEEECCCCeEEEee
Q 018593 301 QTREYVFLATH-------KQVLVYHRNGRLWKEMY 328 (353)
Q Consensus 301 ~~~~~v~~~~~-------~~~~~yd~~~~~~~~v~ 328 (353)
.++.++++++. +.++.||+++++|+++.
T Consensus 11 ~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 11 GDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp -TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred eCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 34565555432 24999999999999983
No 59
>smart00612 Kelch Kelch domain.
Probab=92.70 E-value=0.25 Score=29.40 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=16.9
Q ss_pred cceEEEEEcCCCcEEEeeecccc
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDY 193 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~ 193 (353)
...+++||.++++|+.. +++
T Consensus 14 ~~~v~~yd~~~~~W~~~---~~~ 33 (47)
T smart00612 14 LKSVEVYDPETNKWTPL---PSM 33 (47)
T ss_pred eeeEEEECCCCCeEccC---CCC
Confidence 45788999999999998 655
No 60
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.31 E-value=0.18 Score=46.21 Aligned_cols=96 Identities=14% Similarity=0.223 Sum_probs=64.1
Q ss_pred cEEEeeeccccceeeeeecCceEEEcceEEeeecCC----CEEEEEECCCceEEEe----eCCCCCCCCCceeEEEECC-
Q 018593 183 RWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC----SFILALDLEGDVWRKI----SLPDKVGSESRSYLLECDG- 253 (353)
Q Consensus 183 ~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~----~~i~~~D~~~~~~~~~----~~P~~~~~~~~~~l~~~~g- 253 (353)
.||.+...... -...+..+..|.+...|..+++.. +.+.+||..+++|..- ++|..+ ..+-.+|+|
T Consensus 18 rWrrV~~~tGP-vPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgc----AA~GfvcdGt 92 (830)
T KOG4152|consen 18 RWRRVQQSTGP-VPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGC----AAFGFVCDGT 92 (830)
T ss_pred ceEEEecccCC-CCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCch----hhcceEecCc
Confidence 69888554443 345567777899999888777654 6788999999999854 455554 344456665
Q ss_pred EEEEEEe----cCCeEEEEEEecCCCCCeEEEEee
Q 018593 254 CLSVIEI----SDEWMETWVLKDYYRDEWHSVDKV 284 (353)
Q Consensus 254 ~L~~v~~----~~~~~~vw~l~~~~~~~W~~~~~i 284 (353)
+|+++++ ..-.-+++.|+..- .+|.++..-
T Consensus 93 rilvFGGMvEYGkYsNdLYELQasR-WeWkrlkp~ 126 (830)
T KOG4152|consen 93 RILVFGGMVEYGKYSNDLYELQASR-WEWKRLKPK 126 (830)
T ss_pred eEEEEccEeeeccccchHHHhhhhh-hhHhhcCCC
Confidence 7777765 23455677665422 677776433
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.01 E-value=5.5 Score=35.84 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=65.6
Q ss_pred CCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCC-cceEEE--EEc--
Q 018593 105 EMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDG-TFKCLV--FDS-- 179 (353)
Q Consensus 105 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~-~~~~~v--y~s-- 179 (353)
...+..||++.|.....+|.+..+ ... . ..+ .+| -+++++..........+. ...+|+ |+.
T Consensus 84 ~~~~t~vyDt~t~av~~~P~l~~p----k~~-p-isv-~VG-------~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~ 149 (342)
T PF07893_consen 84 QSGRTLVYDTDTRAVATGPRLHSP----KRC-P-ISV-SVG-------DKLYAMDRSPFPEPAGRPDFPCFEALVYRPPP 149 (342)
T ss_pred CCCCeEEEECCCCeEeccCCCCCC----Ccc-e-EEE-EeC-------CeEEEeeccCccccccCccceeEEEecccccc
Confidence 457799999999999999987655 111 1 111 221 236666421111100000 014454 441
Q ss_pred ----CCC--cEEEeeeccccceeeeee-------cCceEEEcceEEeeecCCC--EEEEEECCCceEEEe---eCCCCC
Q 018593 180 ----ESN--RWRKFVSVQDYYQFSIMN-------RNQVVFVNGALHWLTDSCS--FILALDLEGDVWRKI---SLPDKV 240 (353)
Q Consensus 180 ----~~~--~W~~~~~~~~~~~~~~~~-------~~~~v~~~g~ly~~~~~~~--~i~~~D~~~~~~~~~---~~P~~~ 240 (353)
... +|+.. +.+ |+.... ....|+ +|.--|++.... +-.+||+++.+|+.. .||..-
T Consensus 150 ~~~~~~~~w~W~~L---P~P-Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LPF~G 223 (342)
T PF07893_consen 150 DDPSPEESWSWRSL---PPP-PFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLPFHG 223 (342)
T ss_pred ccccCCCcceEEcC---CCC-CccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeeccceecCcCC
Confidence 222 56666 443 432221 122455 787777765543 799999999999999 678653
No 62
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=91.89 E-value=2.4 Score=32.12 Aligned_cols=68 Identities=31% Similarity=0.325 Sum_probs=50.6
Q ss_pred EEEEEECCCc--eEEEeeCCCCCCCC-----------CceeEEEECCEEEEEEe--c--------CCeEEEEEEecC--C
Q 018593 220 FILALDLEGD--VWRKISLPDKVGSE-----------SRSYLLECDGCLSVIEI--S--------DEWMETWVLKDY--Y 274 (353)
Q Consensus 220 ~i~~~D~~~~--~~~~~~~P~~~~~~-----------~~~~l~~~~g~L~~v~~--~--------~~~~~vw~l~~~--~ 274 (353)
+|+..|+..+ .++.+++|...... ..+.++..+|+|-+|.. . +..+.+|.|... +
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 7889998876 56777887654211 45677889999999987 1 236899999875 3
Q ss_pred CCCeEEEEeeccc
Q 018593 275 RDEWHSVDKVSLR 287 (353)
Q Consensus 275 ~~~W~~~~~i~~~ 287 (353)
..+|.+.+.+...
T Consensus 87 ~~~W~~d~~v~~~ 99 (131)
T PF07762_consen 87 SWEWKKDCEVDLS 99 (131)
T ss_pred CCCEEEeEEEEhh
Confidence 4899999988873
No 63
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=91.50 E-value=0.69 Score=28.08 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=15.2
Q ss_pred CcEEEEECCCCeEEEeee
Q 018593 312 KQVLVYHRNGRLWKEMYS 329 (353)
Q Consensus 312 ~~~~~yd~~~~~~~~v~~ 329 (353)
++++.||+++++|+++.+
T Consensus 19 nd~~~~~~~~~~W~~~~~ 36 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGD 36 (49)
T ss_pred cCEEEEECCCCEEEECCC
Confidence 349999999999999833
No 64
>PLN02772 guanylate kinase
Probab=91.44 E-value=1.4 Score=40.04 Aligned_cols=70 Identities=17% Similarity=0.113 Sum_probs=50.9
Q ss_pred cCceEEEcceEEeeecCC------CEEEEEECCCceEEEee----CCCCCCCCCceeEEEECCEEEEEEe-cCCeEEEEE
Q 018593 201 RNQVVFVNGALHWLTDSC------SFILALDLEGDVWRKIS----LPDKVGSESRSYLLECDGCLSVIEI-SDEWMETWV 269 (353)
Q Consensus 201 ~~~~v~~~g~ly~~~~~~------~~i~~~D~~~~~~~~~~----~P~~~~~~~~~~l~~~~g~L~~v~~-~~~~~~vw~ 269 (353)
....|.+++++|.+++.. ..+.+||..+.+|..-. .|..+. .+..++.-+++|.++.. ....=++|.
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~--GhSa~v~~~~rilv~~~~~~~~~~~w~ 104 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK--GYSAVVLNKDRILVIKKGSAPDDSIWF 104 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC--cceEEEECCceEEEEeCCCCCccceEE
Confidence 345899999999998743 47999999999998762 344442 34455555789999876 444567999
Q ss_pred Eec
Q 018593 270 LKD 272 (353)
Q Consensus 270 l~~ 272 (353)
|+-
T Consensus 105 l~~ 107 (398)
T PLN02772 105 LEV 107 (398)
T ss_pred EEc
Confidence 864
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.24 E-value=7.9 Score=32.33 Aligned_cols=187 Identities=12% Similarity=0.132 Sum_probs=96.6
Q ss_pred CeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceE
Q 018593 95 NGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKC 174 (353)
Q Consensus 95 ~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 174 (353)
+|--|+.. .....+.+|||..+....-=.... +-...+ +..+ +.-|+.. -++...+
T Consensus 28 dGnY~ltc-GsdrtvrLWNp~rg~liktYsghG--------~EVlD~-~~s~----Dnskf~s----------~GgDk~v 83 (307)
T KOG0316|consen 28 DGNYCLTC-GSDRTVRLWNPLRGALIKTYSGHG--------HEVLDA-ALSS----DNSKFAS----------CGGDKAV 83 (307)
T ss_pred CCCEEEEc-CCCceEEeecccccceeeeecCCC--------ceeeec-cccc----ccccccc----------CCCCceE
Confidence 45556553 456789999999887664211110 001111 2222 2223332 2235678
Q ss_pred EEEEcCCC----cEEEeeeccccceeeeeec-CceEEEcceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEE
Q 018593 175 LVFDSESN----RWRKFVSVQDYYQFSIMNR-NQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLL 249 (353)
Q Consensus 175 ~vy~s~~~----~W~~~~~~~~~~~~~~~~~-~~~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~ 249 (353)
.++|..|| .|+.. ... -....+. ..+|.+.|.+- ..+-++|..++.++++..=....+ ...-+
T Consensus 84 ~vwDV~TGkv~Rr~rgH---~aq-VNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQildea~D--~V~Si 151 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGH---LAQ-VNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDEAKD--GVSSI 151 (307)
T ss_pred EEEEcccCeeeeecccc---cce-eeEEEecCcceEEEecccc------ceeEEEEcccCCCCccchhhhhcC--ceeEE
Confidence 88998886 45544 221 1222222 22555555332 589999999999888754333322 23333
Q ss_pred EECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCeEEEe
Q 018593 250 ECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRLWKEM 327 (353)
Q Consensus 250 ~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~~~v 327 (353)
...+-.-+.+..+..+..+.+.. -++....+..-+.-+ ++.+++.+.+...-+. +-+.|.+|++.-..
T Consensus 152 ~v~~heIvaGS~DGtvRtydiR~---------G~l~sDy~g~pit~v-s~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 152 DVAEHEIVAGSVDGTVRTYDIRK---------GTLSSDYFGHPITSV-SFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred EecccEEEeeccCCcEEEEEeec---------ceeehhhcCCcceeE-EecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 44555555554555566654422 111111111112223 5677888777665444 77888888766543
No 66
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.95 E-value=13 Score=34.46 Aligned_cols=202 Identities=10% Similarity=0.066 Sum_probs=107.0
Q ss_pred EEeeecC-CCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEE
Q 018593 98 LCCSSIP-EMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLV 176 (353)
Q Consensus 98 l~~~~~~-~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~v 176 (353)
+.+.... ....+++.|..|++-..|...+.. .. ...+. .++-+++... . .++...+.+
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~---------~~---~~~~S--PDG~~la~~~-----~--~~g~~~Iy~ 261 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGKKEKIASSQGM---------LV---VSDVS--KDGSKLLLTM-----A--PKGQPDIYL 261 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCcEEEEecCCCc---------EE---eeEEC--CCCCEEEEEE-----c--cCCCcEEEE
Confidence 4443323 356899999999998887653322 01 12222 2333444331 1 233567888
Q ss_pred EEcCCCcEEEeeeccccceeeeeecCceEEEcc-eEEeeecCC--CEEEEEECCCceEEEeeCCCCCCCCCceeEEEECC
Q 018593 177 FDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNG-ALHWLTDSC--SFILALDLEGDVWRKISLPDKVGSESRSYLLECDG 253 (353)
Q Consensus 177 y~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g-~ly~~~~~~--~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g 253 (353)
++..++.++..+..+.. .......-+| .||+..... ..|..+|+.++..+.+..-.. .... ..-+|
T Consensus 262 ~dl~~g~~~~LT~~~~~------d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~-~SPDG 330 (419)
T PRK04043 262 YDTNTKTLTQITNYPGI------DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSS-VSTYK 330 (419)
T ss_pred EECCCCcEEEcccCCCc------cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCce-ECCCC
Confidence 89888988887332110 1111222344 577776543 478899999888765532111 1121 22245
Q ss_pred E-EEEEEecC------CeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC-C---cEEEEECCCC
Q 018593 254 C-LSVIEISD------EWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH-K---QVLVYHRNGR 322 (353)
Q Consensus 254 ~-L~~v~~~~------~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~---~~~~yd~~~~ 322 (353)
+ |.++.... ...+|+.++- ++..+..+.. .+.. ..+ ....+|+.+++... + .+..++++.+
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~-~~g~~~~LT~---~~~~--~~p--~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLIST-NSDYIRRLTA---NGVN--QFP--RFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEEC-CCCCeEECCC---CCCc--CCe--EECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 4 44443321 3368888753 3344443322 1111 112 34556665554432 2 2999999998
Q ss_pred eEEEeeeeccCccccce
Q 018593 323 LWKEMYSVKYGSTLPLW 339 (353)
Q Consensus 323 ~~~~v~~~~~~~~~~~~ 339 (353)
+-..+....+....|.|
T Consensus 403 ~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 403 KSFLFPLKVGKIQSIDW 419 (419)
T ss_pred eeEEeecCCCccCCCCC
Confidence 88878655555555555
No 67
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=90.91 E-value=0.5 Score=28.73 Aligned_cols=31 Identities=13% Similarity=0.312 Sum_probs=23.0
Q ss_pred eeecCCcEEEEEeC---C------cEEEEECCCCeEEEee
Q 018593 298 PISQTREYVFLATH---K------QVLVYHRNGRLWKEMY 328 (353)
Q Consensus 298 ~~~~~~~~v~~~~~---~------~~~~yd~~~~~~~~v~ 328 (353)
++..+++++++++. . .+..||+++++|+.+.
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 33447776667665 1 2999999999999884
No 68
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=90.67 E-value=1.2 Score=27.02 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=18.0
Q ss_pred CEEEEEECCCceEEEe-eCCCCC
Q 018593 219 SFILALDLEGDVWRKI-SLPDKV 240 (353)
Q Consensus 219 ~~i~~~D~~~~~~~~~-~~P~~~ 240 (353)
..+.+||+.+.+|+.+ ++|..+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 5689999999999998 556554
No 69
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=90.00 E-value=7.4 Score=35.60 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=66.8
Q ss_pred EEcce-EEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEE-ECCEEEEEEecCCeEEEEEEecCCCCCeEEEEe
Q 018593 206 FVNGA-LHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLE-CDGCLSVIEISDEWMETWVLKDYYRDEWHSVDK 283 (353)
Q Consensus 206 ~~~g~-ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~-~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~ 283 (353)
+-+|. .-+.++...++..||+.+.+.+.+..|...+.....+.-+ -+|...++.+....+.+-...- ++|..-..
T Consensus 266 ~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT---~eli~s~K 342 (514)
T KOG2055|consen 266 APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT---KELITSFK 342 (514)
T ss_pred cCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh---hhhhheee
Confidence 33565 4444444469999999999999997777665321122222 2355444444445555432221 44544333
Q ss_pred eccccccCccceeeeeecCCcEEEE-EeCCcEEEEECCCCeEEEeeeec
Q 018593 284 VSLRCIKGMVPSIFPISQTREYVFL-ATHKQVLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~yd~~~~~~~~v~~~~ 331 (353)
|+ +.+..+ .+..+++.+++ +.++.++++|+++++...-+.-+
T Consensus 343 ie-----G~v~~~-~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 343 IE-----GVVSDF-TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred ec-----cEEeeE-EEecCCcEEEEEcCCceEEEEecCCcceEEEEeec
Confidence 32 333444 55566665554 45677999999999665554333
No 70
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=89.80 E-value=0.46 Score=43.65 Aligned_cols=127 Identities=11% Similarity=0.162 Sum_probs=79.6
Q ss_pred eeeecCceEEEcc--eEEeeecCC-----CEEEEEECCCceEEEee----CCCCCCCCCceeEEEECCEEEEEEe-----
Q 018593 197 SIMNRNQVVFVNG--ALHWLTDSC-----SFILALDLEGDVWRKIS----LPDKVGSESRSYLLECDGCLSVIEI----- 260 (353)
Q Consensus 197 ~~~~~~~~v~~~g--~ly~~~~~~-----~~i~~~D~~~~~~~~~~----~P~~~~~~~~~~l~~~~g~L~~v~~----- 260 (353)
+.+..+++|...+ ++|..++-. .---+|....+.|+.+. .|..+.. ..+.+-++..+||+.+.
T Consensus 259 ~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC-HRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 259 GMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSC-HRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred cccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhh-hhhhhhhhHhHHhhhhhccccc
Confidence 3455667899888 999998875 22457888999999993 4544422 22333355668888764
Q ss_pred ----cCCeEEEEEEecCCCCCeEEEEeeccc---cccC-ccceeeeeecCCcEEEEEeC----------CcEEEEECCCC
Q 018593 261 ----SDEWMETWVLKDYYRDEWHSVDKVSLR---CIKG-MVPSIFPISQTREYVFLATH----------KQVLVYHRNGR 322 (353)
Q Consensus 261 ----~~~~~~vw~l~~~~~~~W~~~~~i~~~---~~~~-~~~~~~~~~~~~~~v~~~~~----------~~~~~yd~~~~ 322 (353)
...+-++|++ |.+++.|+.+. +... +... +-..+ ++..+..++++.++ +.++.||...+
T Consensus 338 ~r~~~s~RsDfW~F-Di~~~~W~~ls-~dt~~dGGP~~vfDHqM-~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~ 414 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRF-DIDTNTWMLLS-EDTAADGGPKLVFDHQM-CVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQ 414 (723)
T ss_pred cccccccccceEEE-ecCCceeEEec-ccccccCCcceeeccee-eEecCcceEEEecCeeccCCCccccceEEEecCCc
Confidence 1346689998 44558898853 3321 2211 12234 55555544555432 23999999999
Q ss_pred eEEEe
Q 018593 323 LWKEM 327 (353)
Q Consensus 323 ~~~~v 327 (353)
.|+-+
T Consensus 415 ~w~~l 419 (723)
T KOG2437|consen 415 TWKLL 419 (723)
T ss_pred cHHHH
Confidence 99866
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=89.46 E-value=16 Score=33.16 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=59.3
Q ss_pred ceEEEcceEEeeecCCCEEEEEECCCce--EEEeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEE
Q 018593 203 QVVFVNGALHWLTDSCSFILALDLEGDV--WRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHS 280 (353)
Q Consensus 203 ~~v~~~g~ly~~~~~~~~i~~~D~~~~~--~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~ 280 (353)
.++..+|.+|.....+ .+.+||+.+++ |..- .+. ....+..+|++++... +..+..+..+ .++..|..
T Consensus 236 ~p~~~~~~vy~~~~~g-~l~a~d~~tG~~~W~~~-~~~------~~~p~~~~~~vyv~~~-~G~l~~~d~~-tG~~~W~~ 305 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQG-RVAALDLRSGRVLWKRD-ASS------YQGPAVDDNRLYVTDA-DGVVVALDRR-SGSELWKN 305 (377)
T ss_pred ccEEECCEEEEEEcCC-EEEEEECCCCcEEEeec-cCC------ccCceEeCCEEEEECC-CCeEEEEECC-CCcEEEcc
Confidence 3667889999988775 89999998754 5432 211 1223345666665542 2333333321 12244654
Q ss_pred EEeeccccccCccceeeeeecCCcEEEEEeCCcEEEEECCCCeEEEeeeec
Q 018593 281 VDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 281 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~~~~~~v~~~~ 331 (353)
.. +... ....+. ..++.+++....+.++++|.++++...-..+.
T Consensus 306 ~~-~~~~---~~ssp~---i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 306 DE-LKYR---QLTAPA---VVGGYLVVGDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred cc-ccCC---ccccCE---EECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 21 1110 111122 12455333344566999999988776554443
No 72
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=88.74 E-value=13 Score=31.11 Aligned_cols=112 Identities=12% Similarity=0.135 Sum_probs=63.2
Q ss_pred EEcceEEeeecCCCEEEEEECCCceEEEeeCCCCCCC--CC-ceeEEEE--CC--EEEEEEe-----cCCeEEEEEEecC
Q 018593 206 FVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGS--ES-RSYLLEC--DG--CLSVIEI-----SDEWMETWVLKDY 273 (353)
Q Consensus 206 ~~~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~--~~-~~~l~~~--~g--~L~~v~~-----~~~~~~vw~l~~~ 273 (353)
.+||.+ .+... ..+...||.|+++..+|.|..... .. ...++.. .+ ++..+.. ....++|+.+..
T Consensus 3 sCnGLl-c~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~- 79 (230)
T TIGR01640 3 PCDGLI-CFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGS- 79 (230)
T ss_pred ccceEE-EEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCC-
Confidence 468888 44443 389999999999999876543211 01 1222221 12 3322222 124667776643
Q ss_pred CCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCC------cEEEEECCCCeEEE
Q 018593 274 YRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHK------QVLVYHRNGRLWKE 326 (353)
Q Consensus 274 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~yd~~~~~~~~ 326 (353)
++|..+...+...... . . ++.-+|.+.++.... .++.||+++++|..
T Consensus 80 --~~Wr~~~~~~~~~~~~--~-~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~ 132 (230)
T TIGR01640 80 --NSWRTIECSPPHHPLK--S-R-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKE 132 (230)
T ss_pred --CCccccccCCCCcccc--C-C-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEee
Confidence 6899876322211111 1 1 233377766666422 49999999999995
No 73
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.69 E-value=15 Score=31.64 Aligned_cols=222 Identities=12% Similarity=0.083 Sum_probs=117.2
Q ss_pred eecCeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecC---C-CceEEEEEeeecc----
Q 018593 92 ASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLA---K-NKYNVVLAGYHRA---- 163 (353)
Q Consensus 92 ~s~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~---~-~~ykvv~~~~~~~---- 163 (353)
-+-+|-+-+.. .....+--.||.|++-...|-..... ++.. -+|-|.. + ..-.|.++.-+..
T Consensus 69 papdG~VWft~-qg~gaiGhLdP~tGev~~ypLg~Ga~-----Phgi----v~gpdg~~Witd~~~aI~R~dpkt~evt~ 138 (353)
T COG4257 69 PAPDGAVWFTA-QGTGAIGHLDPATGEVETYPLGSGAS-----PHGI----VVGPDGSAWITDTGLAIGRLDPKTLEVTR 138 (353)
T ss_pred cCCCCceEEec-CccccceecCCCCCceEEEecCCCCC-----CceE----EECCCCCeeEecCcceeEEecCcccceEE
Confidence 34567777764 33445566799999988877554321 1111 1111111 0 0113333321000
Q ss_pred ---cCCCCCCcceEEEEEcCCCcEEEeee-----cc----cc----ceeeeeecCceEEEcceEEeeecCCCEEEEEECC
Q 018593 164 ---FGHRPDGTFKCLVFDSESNRWRKFVS-----VQ----DY----YQFSIMNRNQVVFVNGALHWLTDSCSFILALDLE 227 (353)
Q Consensus 164 ---~~~~~~~~~~~~vy~s~~~~W~~~~~-----~~----~~----~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~~D~~ 227 (353)
-.+..+.+...-+||...+.|-+.+. .. .+ .|++.-...-.+.-||.+|+..-.+.+|...|+.
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~ 218 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF 218 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence 01112335666689988888954410 00 00 0111111111555689999886655799999999
Q ss_pred CceEEEeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEE
Q 018593 228 GDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVF 307 (353)
Q Consensus 228 ~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~ 307 (353)
+..-+.++.|.....+....-+..-|++.+-......+.- + +....+|..- .+|-.+.. ...+ .++..++ |.
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~r--f-dPs~~sW~ey-pLPgs~ar--pys~-rVD~~gr-VW 290 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHR--F-DPSVTSWIEY-PLPGSKAR--PYSM-RVDRHGR-VW 290 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccCCceeeE--e-Ccccccceee-eCCCCCCC--ccee-eeccCCc-EE
Confidence 9988888888874321112122234666655433333222 2 3333567663 34431111 1234 5666777 55
Q ss_pred EE--eCCcEEEEECCCCeEEEeeeec
Q 018593 308 LA--THKQVLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 308 ~~--~~~~~~~yd~~~~~~~~v~~~~ 331 (353)
+. ..+.+..||++|.+++.+..-+
T Consensus 291 ~sea~agai~rfdpeta~ftv~p~pr 316 (353)
T COG4257 291 LSEADAGAIGRFDPETARFTVLPIPR 316 (353)
T ss_pred eeccccCceeecCcccceEEEecCCC
Confidence 53 2345999999999999986554
No 74
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=88.68 E-value=14 Score=32.70 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=61.9
Q ss_pred ceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeecccc
Q 018593 209 GALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRC 288 (353)
Q Consensus 209 g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~ 288 (353)
+.+||.......|..+|+.++.-+....|... ....+...+|+|..... .+.++.. +.+ ..|++........
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~---~~~~~~d~~g~Lv~~~~---g~~~~~~-~~~-~~~t~~~~~~~~~ 108 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRVFPSPGGF---SSGALIDAGGRLIACEH---GVRLLDP-DTG-GKITLLAEPEDGL 108 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEEEECCCCc---ccceeecCCCeEEEEcc---ccEEEec-cCC-ceeEEeccccCCC
Confidence 45899988778999999999988888899877 33444444555554432 1222222 211 4444443333211
Q ss_pred ccCccceeeeeecCCcEEEEEeCC-------------cEEEEECCCCeEEEeee
Q 018593 289 IKGMVPSIFPISQTREYVFLATHK-------------QVLVYHRNGRLWKEMYS 329 (353)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~~~~~-------------~~~~yd~~~~~~~~v~~ 329 (353)
.....-.. .+..+|. +++.+.+ .++.||+.+.+.+.+..
T Consensus 109 ~~~r~ND~-~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~ 160 (307)
T COG3386 109 PLNRPNDG-VVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD 160 (307)
T ss_pred CcCCCCce-eEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC
Confidence 11111122 4455677 4444333 28999986555555543
No 75
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.45 E-value=19 Score=32.69 Aligned_cols=142 Identities=15% Similarity=0.069 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCcEEEeeeccccceeeeeecCc-eEEEcceEEeeecCCCEEEEEECCCce--EEEeeCC-CCCCCCCcee
Q 018593 172 FKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQ-VVFVNGALHWLTDSCSFILALDLEGDV--WRKISLP-DKVGSESRSY 247 (353)
Q Consensus 172 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~-~v~~~g~ly~~~~~~~~i~~~D~~~~~--~~~~~~P-~~~~~~~~~~ 247 (353)
.........+..|... ... ......... .++.+|++|.-...+ .+.++|+.+.+ |+.-... ... ....
T Consensus 35 ~~~~~~~~g~~~W~~~---~~~-~~~~~~~~~~~~~~dg~v~~~~~~G-~i~A~d~~~g~~~W~~~~~~~~~~---~~~~ 106 (370)
T COG1520 35 VAVANNTSGTLLWSVS---LGS-GGGGIYAGPAPADGDGTVYVGTRDG-NIFALNPDTGLVKWSYPLLGAVAQ---LSGP 106 (370)
T ss_pred eEEEcccCcceeeeee---ccc-CccceEeccccEeeCCeEEEecCCC-cEEEEeCCCCcEEecccCcCccee---ccCc
Confidence 3444555667788654 111 111122222 599999999986665 89999999976 7654333 111 2333
Q ss_pred EEEECCEEEEEEecCCeEEEEEEec-CCCCCeEEEEeeccccccCccceeeeeecCCcEEEEE-eCCcEEEEECCCCeEE
Q 018593 248 LLECDGCLSVIEISDEWMETWVLKD-YYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLA-THKQVLVYHRNGRLWK 325 (353)
Q Consensus 248 l~~~~g~L~~v~~~~~~~~vw~l~~-~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~yd~~~~~~~ 325 (353)
+...+|+|++-.... .++.+++ .+...|....... .. ...- .+..++. +++. ..+.++..|.+|++..
T Consensus 107 ~~~~~G~i~~g~~~g---~~y~ld~~~G~~~W~~~~~~~---~~--~~~~-~v~~~~~-v~~~s~~g~~~al~~~tG~~~ 176 (370)
T COG1520 107 ILGSDGKIYVGSWDG---KLYALDASTGTLVWSRNVGGS---PY--YASP-PVVGDGT-VYVGTDDGHLYALNADTGTLK 176 (370)
T ss_pred eEEeCCeEEEecccc---eEEEEECCCCcEEEEEecCCC---eE--EecC-cEEcCcE-EEEecCCCeEEEEEccCCcEE
Confidence 344488977765533 7888877 4547788764331 00 0111 2233454 6666 4577999999988776
Q ss_pred Eeeeec
Q 018593 326 EMYSVK 331 (353)
Q Consensus 326 ~v~~~~ 331 (353)
+.....
T Consensus 177 W~~~~~ 182 (370)
T COG1520 177 WTYETP 182 (370)
T ss_pred EEEecC
Confidence 665443
No 76
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=88.45 E-value=17 Score=32.17 Aligned_cols=129 Identities=10% Similarity=0.131 Sum_probs=78.2
Q ss_pred cceEEeeecCC-CEEEEEECCCceEEEe---eCCCCCCCCCceeEEEE-CCEEEEEEe-cCCeEEEEEEecCCCCCeEEE
Q 018593 208 NGALHWLTDSC-SFILALDLEGDVWRKI---SLPDKVGSESRSYLLEC-DGCLSVIEI-SDEWMETWVLKDYYRDEWHSV 281 (353)
Q Consensus 208 ~g~ly~~~~~~-~~i~~~D~~~~~~~~~---~~P~~~~~~~~~~l~~~-~g~L~~v~~-~~~~~~vw~l~~~~~~~W~~~ 281 (353)
+|..-+...-+ +.|..||+..+..... .+++.. ..+.|+-- +|++.++.. -...+.||..+.. ..+-..+
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~---GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~l 230 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA---GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEEL 230 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccccccCCCC---CcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEe
Confidence 34444443332 5788888886665544 334333 33455543 477766655 7889999977554 2555566
Q ss_pred Eeecc-c-ccc--CccceeeeeecCCcEEEEEeCCc----EEEEECCCCeEEEeeeeccCccccceEE
Q 018593 282 DKVSL-R-CIK--GMVPSIFPISQTREYVFLATHKQ----VLVYHRNGRLWKEMYSVKYGSTLPLWFS 341 (353)
Q Consensus 282 ~~i~~-~-~~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~yd~~~~~~~~v~~~~~~~~~~~~~~ 341 (353)
.++.. + .+. .....+ .+..+|++++....+. ++..|..+++.+-+......+..|+-|.
T Consensus 231 Q~i~tlP~dF~g~~~~aaI-his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~ 297 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAI-HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN 297 (346)
T ss_pred eeeccCccccCCCCceeEE-EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce
Confidence 55554 2 222 234455 6788999777765433 7888889898888865554444466554
No 77
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.24 E-value=12 Score=33.35 Aligned_cols=128 Identities=16% Similarity=0.320 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC------CE--EEEEECCCceEEEe-eCCCCCCC
Q 018593 172 FKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC------SF--ILALDLEGDVWRKI-SLPDKVGS 242 (353)
Q Consensus 172 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~------~~--i~~~D~~~~~~~~~-~~P~~~~~ 242 (353)
..+-+|+..++.|+.. ... |...+.....+.-++++-.+.++- .. ..-|.-...+|..+ ++|.....
T Consensus 196 ~ev~sy~p~~n~W~~~---G~~-pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~ 271 (381)
T COG3055 196 KEVLSYDPSTNQWRNL---GEN-PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGS 271 (381)
T ss_pred ccccccccccchhhhc---CcC-cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCC
Confidence 3555899999999999 444 555454443333444455554432 23 44444556789888 66665433
Q ss_pred C----CceeEEEECCEEEEEEe---c-------------------CCeEEEEEEecCCCCCeEEEEeeccccccCcccee
Q 018593 243 E----SRSYLLECDGCLSVIEI---S-------------------DEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSI 296 (353)
Q Consensus 243 ~----~~~~l~~~~g~L~~v~~---~-------------------~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~ 296 (353)
. ....-+.++|.+.+..+ . ..+-+||.+++ ..|..+..+|.. +.+ .+
T Consensus 272 ~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~---g~Wk~~GeLp~~-l~Y---G~ 344 (381)
T COG3055 272 NKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN---GSWKIVGELPQG-LAY---GV 344 (381)
T ss_pred CccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC---CceeeecccCCC-ccc---eE
Confidence 1 23334456666666554 0 12346888864 789999988862 221 22
Q ss_pred eeeecCCcEEEEEeC
Q 018593 297 FPISQTREYVFLATH 311 (353)
Q Consensus 297 ~~~~~~~~~v~~~~~ 311 (353)
.+..++.++++.+.
T Consensus 345 -s~~~nn~vl~IGGE 358 (381)
T COG3055 345 -SLSYNNKVLLIGGE 358 (381)
T ss_pred -EEecCCcEEEEccc
Confidence 44557776777654
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=88.01 E-value=21 Score=32.70 Aligned_cols=203 Identities=17% Similarity=0.120 Sum_probs=99.0
Q ss_pred eeEeeecCeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCC---------CceEEEEE
Q 018593 88 VKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAK---------NKYNVVLA 158 (353)
Q Consensus 88 ~~~~~s~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~---------~~ykvv~~ 158 (353)
..+..|++|-.+... .....+.||++.|.+++.--.-. +.... +++|-..+ ..-|+..+
T Consensus 206 l~~avS~Dgkylatg-g~d~~v~Iw~~~t~ehv~~~~gh--------r~~V~---~L~fr~gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATG-GRDRHVQIWDCDTLEHVKVFKGH--------RGAVS---SLAFRKGTSELYSASADRSVKVWSI 273 (479)
T ss_pred EEEEEcCCCcEEEec-CCCceEEEecCcccchhhccccc--------cccee---eeeeecCccceeeeecCCceEEEeh
Confidence 345678889888875 55667889999999988752111 11111 23322111 12233322
Q ss_pred eeec----ccCCCCC--------CcceEEEE--EcCCCcEEEeeeccccceeeeee---cCc-eEEEcceEEeeecCC-C
Q 018593 159 GYHR----AFGHRPD--------GTFKCLVF--DSESNRWRKFVSVQDYYQFSIMN---RNQ-VVFVNGALHWLTDSC-S 219 (353)
Q Consensus 159 ~~~~----~~~~~~~--------~~~~~~vy--~s~~~~W~~~~~~~~~~~~~~~~---~~~-~v~~~g~ly~~~~~~-~ 219 (353)
.... .|++.+. ....+.|+ |....-|+.. .+. ....+. +.. ..++|. -|++.+++ .
T Consensus 274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~---ees-qlifrg~~~sidcv~~In~-~HfvsGSdnG 348 (479)
T KOG0299|consen 274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP---EES-QLIFRGGEGSIDCVAFIND-EHFVSGSDNG 348 (479)
T ss_pred hHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc---ccc-eeeeeCCCCCeeeEEEecc-cceeeccCCc
Confidence 1100 0222111 02233344 3334568775 333 122121 112 334444 44444443 4
Q ss_pred EEEEEECCCceEEEe-eCCCCCCCC--------CceeEEEECCEEEEEEe-cCCeEEEEEEecCCCCCeEEEEeeccccc
Q 018593 220 FILALDLEGDVWRKI-SLPDKVGSE--------SRSYLLECDGCLSVIEI-SDEWMETWVLKDYYRDEWHSVDKVSLRCI 289 (353)
Q Consensus 220 ~i~~~D~~~~~~~~~-~~P~~~~~~--------~~~~l~~~~g~L~~v~~-~~~~~~vw~l~~~~~~~W~~~~~i~~~~~ 289 (353)
.|.-.++.+.+--.. ..+...... +-..|+++.|.=.++.+ .+..+.+|..++.- ..-..+..+++.
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~-r~i~~l~~ls~~-- 425 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL-RAINLLYSLSLV-- 425 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc-cccceeeecccc--
Confidence 566666666543222 232222110 33456666654444444 78899999996632 445556666643
Q ss_pred cCccceeeeeecCCcEEEEEeCC
Q 018593 290 KGMVPSIFPISQTREYVFLATHK 312 (353)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~~~~~ 312 (353)
+++..+ ++..+|..++.+...
T Consensus 426 -GfVNsl-~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 426 -GFVNSL-AFSNSGKRIVAGIGK 446 (479)
T ss_pred -cEEEEE-EEccCCCEEEEeccc
Confidence 334455 666777756665443
No 79
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=86.31 E-value=27 Score=32.06 Aligned_cols=136 Identities=10% Similarity=0.091 Sum_probs=72.1
Q ss_pred ceEEEEEcCCC--cEEEeeeccccceeeeeecCceEEEcceEEeeecCCCEEEEEECCCce--EEEe-eCCCCCCC----
Q 018593 172 FKCLVFDSESN--RWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDV--WRKI-SLPDKVGS---- 242 (353)
Q Consensus 172 ~~~~vy~s~~~--~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~--~~~~-~~P~~~~~---- 242 (353)
..+..+|.++| .|+.. ...+.........++..+|.+|+....+ .+.++|..+++ |+.- ..|.....
T Consensus 170 g~l~ald~~tG~~~W~~~---~~~~~~~~~~~~sP~v~~~~v~~~~~~g-~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 170 GMLQALNESDGAVKWTVN---LDVPSLTLRGESAPATAFGGAIVGGDNG-RVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CEEEEEEccCCCEeeeec---CCCCcccccCCCCCEEECCEEEEEcCCC-EEEEEEccCChhhheeccccCCCccchhcc
Confidence 36777887776 58876 2220112222344677788888877665 89999998864 6532 22321100
Q ss_pred -CCceeEEEECCEEEEEEecCCeEEEEEEecC-CCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCcEEEEECC
Q 018593 243 -ESRSYLLECDGCLSVIEISDEWMETWVLKDY-YRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRN 320 (353)
Q Consensus 243 -~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~ 320 (353)
.....-+..+|.|++...+ .. ++.++-. +...|.... . .. ..+ +..++.+++....+.++.+|.+
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~-g~--l~ald~~tG~~~W~~~~--~--~~---~~~---~~~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYN-GN--LVALDLRSGQIVWKREY--G--SV---NDF---AVDGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred cccCCCcEEECCEEEEEEcC-Ce--EEEEECCCCCEEEeecC--C--Cc---cCc---EEECCEEEEEcCCCeEEEEECC
Confidence 0012223457777765542 22 3333322 225676531 1 00 011 2235664444556679999999
Q ss_pred CCeE
Q 018593 321 GRLW 324 (353)
Q Consensus 321 ~~~~ 324 (353)
+++.
T Consensus 313 tG~~ 316 (394)
T PRK11138 313 GGVE 316 (394)
T ss_pred CCcE
Confidence 8854
No 80
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.19 E-value=26 Score=31.82 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=34.2
Q ss_pred ceEEEEEcCCC--cEEEeeeccccceeeeeecCceEEEcceEEeeecCCCEEEEEECCCce--EEEe
Q 018593 172 FKCLVFDSESN--RWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDV--WRKI 234 (353)
Q Consensus 172 ~~~~vy~s~~~--~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~--~~~~ 234 (353)
..+..+|..+| .|+.. ... + ....++..++.+|.....+ .+.++|..+++ |+.-
T Consensus 115 g~l~ald~~tG~~~W~~~---~~~-~----~~~~p~v~~~~v~v~~~~g-~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAK---LSS-E----VLSPPLVANGLVVVRTNDG-RLTALDAATGERLWTYS 172 (377)
T ss_pred CEEEEEECCCCcEeeeec---cCc-e----eecCCEEECCEEEEECCCC-eEEEEEcCCCceeeEEc
Confidence 35667776665 58765 221 1 1133566788888876664 89999998754 6543
No 81
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.86 E-value=24 Score=30.26 Aligned_cols=112 Identities=10% Similarity=0.001 Sum_probs=67.4
Q ss_pred EcceEEeeecCC--CEEEEEECCCceEE-EeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEe
Q 018593 207 VNGALHWLTDSC--SFILALDLEGDVWR-KISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDK 283 (353)
Q Consensus 207 ~~g~ly~~~~~~--~~i~~~D~~~~~~~-~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~ 283 (353)
.+|.+|=-++.. ..|..+|+.+++.. ..++|... ..=-+...+++|+..+-.+...-++.. ....++.+
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~---FgEGit~~~d~l~qLTWk~~~~f~yd~-----~tl~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY---FGEGITILGDKLYQLTWKEGTGFVYDP-----NTLKKIGT 125 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----EEEEEEETTEEEEEESSSSEEEEEET-----TTTEEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc---cceeEEEECCEEEEEEecCCeEEEEcc-----ccceEEEE
Confidence 457777666654 58999999998765 45898866 445667789999999886666666632 23556666
Q ss_pred eccccccCccceeeeeecCCcEEEEEe-CCcEEEEECCCCeEEEeeeecc
Q 018593 284 VSLRCIKGMVPSIFPISQTREYVFLAT-HKQVLVYHRNGRLWKEMYSVKY 332 (353)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~yd~~~~~~~~v~~~~~ 332 (353)
.+.++-. - ++..+++.+++.. ...+...|+++=+..+--.++.
T Consensus 126 ~~y~~EG-----W-GLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 126 FPYPGEG-----W-GLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp EE-SSS--------EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred EecCCcc-----e-EEEcCCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence 6654311 1 4445566455543 3459999998855444445543
No 82
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=84.56 E-value=28 Score=30.85 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=70.4
Q ss_pred cce-EEeeecCCCEEEEEECC--CceEEEe----eCCCCCCCC-CceeEEE-ECCE-EEEEEecCCeEEEEEEecCCCCC
Q 018593 208 NGA-LHWLTDSCSFILALDLE--GDVWRKI----SLPDKVGSE-SRSYLLE-CDGC-LSVIEISDEWMETWVLKDYYRDE 277 (353)
Q Consensus 208 ~g~-ly~~~~~~~~i~~~D~~--~~~~~~~----~~P~~~~~~-~~~~l~~-~~g~-L~~v~~~~~~~~vw~l~~~~~~~ 277 (353)
+|. +|........|.+||.. +++++.+ .+|...... ....+.. -+|+ |++.......+.+|.++..+ ..
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~-~~ 263 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG-SV 263 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC-Ce
Confidence 444 55555534688888886 4455444 234322110 1112222 2455 44443366789999885543 45
Q ss_pred eEEEEeeccccccCccceeeeeecCCcEEEEEeC--CcEEEE--ECCCCeEEEeeeeccCccccceEE
Q 018593 278 WHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH--KQVLVY--HRNGRLWKEMYSVKYGSTLPLWFS 341 (353)
Q Consensus 278 W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~y--d~~~~~~~~v~~~~~~~~~~~~~~ 341 (353)
+..+..++.. .....+ .+..+|+.+++... +.+.+| |.+++.++.+..+.. +..|.+..
T Consensus 264 ~~~~~~~~~~---~~p~~~-~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~ 326 (330)
T PRK11028 264 LSFEGHQPTE---TQPRGF-NIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMWVS 326 (330)
T ss_pred EEEeEEEecc---ccCCce-EECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceEEE
Confidence 6666666542 112234 66778887777653 346666 556788888866543 44555543
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.93 E-value=0.68 Score=41.83 Aligned_cols=36 Identities=36% Similarity=0.715 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHhcCCchhhhhhhccchhhhhhcCCh
Q 018593 3 FFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDK 38 (353)
Q Consensus 3 ~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~li~~~ 38 (353)
.||.|++..||+-|..+++.|++.+|+.|+-+..+.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 589999999999999999999999999999876553
No 84
>PRK04792 tolB translocation protein TolB; Provisional
Probab=83.47 E-value=40 Score=31.66 Aligned_cols=198 Identities=10% Similarity=0.097 Sum_probs=96.5
Q ss_pred CCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcE
Q 018593 105 EMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRW 184 (353)
Q Consensus 105 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W 184 (353)
....++++|..+++...+...+.. .. ...+.+. +-+++... . .++...+.+++.+++..
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g~---------~~---~~~wSPD--G~~La~~~-----~--~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPGI---------NG---APRFSPD--GKKLALVL-----S--KDGQPEIYVVDIATKAL 298 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCCC---------cC---CeeECCC--CCEEEEEE-----e--CCCCeEEEEEECCCCCe
Confidence 345799999999887766543321 00 2233332 22343321 1 23356777888888887
Q ss_pred EEeeeccccceeeeeecCceEEEcc-eEEeeecCC--CEEEEEECCCceEEEeeCCCCCCCCCceeEEEECC-EEEEEEe
Q 018593 185 RKFVSVQDYYQFSIMNRNQVVFVNG-ALHWLTDSC--SFILALDLEGDVWRKISLPDKVGSESRSYLLECDG-CLSVIEI 260 (353)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~g-~ly~~~~~~--~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g-~L~~v~~ 260 (353)
+..+..... .... ...-+| .+++..... ..|..+|+.+.+...+....... .... ..-+| .|++...
T Consensus 299 ~~lt~~~~~-~~~p-----~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~--~~~~-~SpDG~~l~~~~~ 369 (448)
T PRK04792 299 TRITRHRAI-DTEP-----SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN--LGGS-ITPDGRSMIMVNR 369 (448)
T ss_pred EECccCCCC-ccce-----EECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC--cCee-ECCCCCEEEEEEe
Confidence 766321110 0111 112234 355544322 46888999888877664321110 1111 12245 4444444
Q ss_pred cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC-C---cEEEEECCCCeEEEeeeeccCccc
Q 018593 261 SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH-K---QVLVYHRNGRLWKEMYSVKYGSTL 336 (353)
Q Consensus 261 ~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~---~~~~yd~~~~~~~~v~~~~~~~~~ 336 (353)
.....+||.++- ++.....+. ..... ..+ ....+|..+++... + .++.+|.+.+.-..+..-.+....
T Consensus 370 ~~g~~~I~~~dl-~~g~~~~lt---~~~~d--~~p--s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~ 441 (448)
T PRK04792 370 TNGKFNIARQDL-ETGAMQVLT---STRLD--ESP--SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKS 441 (448)
T ss_pred cCCceEEEEEEC-CCCCeEEcc---CCCCC--CCc--eECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCC
Confidence 555678888853 323333321 11111 112 23445654554332 2 278889866655555332333445
Q ss_pred cceE
Q 018593 337 PLWF 340 (353)
Q Consensus 337 ~~~~ 340 (353)
|.|.
T Consensus 442 p~Ws 445 (448)
T PRK04792 442 PAWS 445 (448)
T ss_pred CccC
Confidence 5554
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=82.22 E-value=40 Score=30.86 Aligned_cols=120 Identities=16% Similarity=0.250 Sum_probs=75.1
Q ss_pred eEEEcceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEEECCEEEEEEe-cCCeEEEEEEecCCCCCeEEEE
Q 018593 204 VVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEI-SDEWMETWVLKDYYRDEWHSVD 282 (353)
Q Consensus 204 ~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~-~~~~~~vw~l~~~~~~~W~~~~ 282 (353)
.+.-||.|+-.+.....+-.||+.+.. ..-.+|.+-.. -..+.-.++.-+++.. ++..+.+|-|.... ...
T Consensus 354 ~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~--vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~k 425 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGP--VKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFK 425 (506)
T ss_pred eEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCc--eeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccc
Confidence 455578888777766678889999988 44477775422 2334444555555555 66669999775432 223
Q ss_pred eeccccccCccceeeeeecCCcEEEEEeCC-cEEEEECCCCeEEEeeeeccC
Q 018593 283 KVSLRCIKGMVPSIFPISQTREYVFLATHK-QVLVYHRNGRLWKEMYSVKYG 333 (353)
Q Consensus 283 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~yd~~~~~~~~v~~~~~~ 333 (353)
++.++... -+..+ .++..|..+.+.+.. .++.|+..++.|.++......
T Consensus 426 t~~l~~~~-~v~s~-~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 426 TIQLDEKK-EVNSL-SFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred eeeccccc-cceeE-EEcCCCCeEEeecceeEEEEEecccccceeeehhhhc
Confidence 33332111 12344 677788855555322 288999999999999776543
No 86
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.51 E-value=36 Score=29.76 Aligned_cols=82 Identities=13% Similarity=0.227 Sum_probs=46.2
Q ss_pred ECCEEEEEEe-cCCeEEEEEEecCCC-CCeEEEEeecc-cc-ccCccceeeee----ec-CCcEEEEEeCC------c--
Q 018593 251 CDGCLSVIEI-SDEWMETWVLKDYYR-DEWHSVDKVSL-RC-IKGMVPSIFPI----SQ-TREYVFLATHK------Q-- 313 (353)
Q Consensus 251 ~~g~L~~v~~-~~~~~~vw~l~~~~~-~~W~~~~~i~~-~~-~~~~~~~~~~~----~~-~~~~v~~~~~~------~-- 313 (353)
..-.|-|+.. .+..+.|+..-+..+ ..|.+.+.|.. .. ......+.+|+ .. ....+.++... +
T Consensus 123 ~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~ 202 (361)
T KOG2445|consen 123 KHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVK 202 (361)
T ss_pred hhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceE
Confidence 3333444444 567888887666555 88999887763 10 00001111122 11 22323344333 2
Q ss_pred EEEEECCCCeEEEeeeecc
Q 018593 314 VLVYHRNGRLWKEMYSVKY 332 (353)
Q Consensus 314 ~~~yd~~~~~~~~v~~~~~ 332 (353)
++-||-.+++|.++..+.+
T Consensus 203 Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 203 IYEYNENGRKWLKVAELPD 221 (361)
T ss_pred EEEecCCcceeeeehhcCC
Confidence 8899999999999988763
No 87
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=81.38 E-value=46 Score=30.97 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=25.2
Q ss_pred eeecCCcEEEEEeCC-cEEEEECCCCeEEEeeeec
Q 018593 298 PISQTREYVFLATHK-QVLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 298 ~~~~~~~~v~~~~~~-~~~~yd~~~~~~~~v~~~~ 331 (353)
.+..+|+.+++..++ ++.++|++|++.+.+..-+
T Consensus 408 ~vs~dGK~~vvaNdr~el~vididngnv~~idkS~ 442 (668)
T COG4946 408 KVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE 442 (668)
T ss_pred EEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc
Confidence 556788856665544 4999999999999886544
No 88
>PRK00178 tolB translocation protein TolB; Provisional
Probab=80.33 E-value=50 Score=30.67 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=97.3
Q ss_pred CceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEE
Q 018593 106 MGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWR 185 (353)
Q Consensus 106 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~ 185 (353)
...++++|..+++...+...+.. .. ...+.+ ++-+++... . .++...+.+++.+++..+
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~---------~~---~~~~Sp--DG~~la~~~-----~--~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL---------NG---APAWSP--DGSKLAFVL-----S--KDGNPEIYVMDLASRQLS 280 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC---------cC---CeEECC--CCCEEEEEE-----c--cCCCceEEEEECCCCCeE
Confidence 45799999999988777644321 00 123333 222343321 1 233457788899888877
Q ss_pred EeeeccccceeeeeecCceEEEcc-eEEeeecCC--CEEEEEECCCceEEEeeCCCCCCCCCceeEEEECC-EEEEEEec
Q 018593 186 KFVSVQDYYQFSIMNRNQVVFVNG-ALHWLTDSC--SFILALDLEGDVWRKISLPDKVGSESRSYLLECDG-CLSVIEIS 261 (353)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~~g-~ly~~~~~~--~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g-~L~~v~~~ 261 (353)
........ ... ....-+| .+++..... ..|..+|+.++....+....... ...... -+| .|++....
T Consensus 281 ~lt~~~~~-~~~-----~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~--~~~~~S-pdg~~i~~~~~~ 351 (430)
T PRK00178 281 RVTNHPAI-DTE-----PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN--ARPRLS-ADGKTLVMVHRQ 351 (430)
T ss_pred EcccCCCC-cCC-----eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc--cceEEC-CCCCEEEEEEcc
Confidence 66221111 000 1112233 466655432 46888898888776664322110 111111 234 44444434
Q ss_pred CCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC----CcEEEEECCCCeEEEeeeeccCcccc
Q 018593 262 DEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH----KQVLVYHRNGRLWKEMYSVKYGSTLP 337 (353)
Q Consensus 262 ~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~yd~~~~~~~~v~~~~~~~~~~ 337 (353)
.....||.++- ++.+...+.. .... ..+ .+..+|+.+++... ..++..|...+.-..+..-.+....|
T Consensus 352 ~~~~~l~~~dl-~tg~~~~lt~---~~~~--~~p--~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p 423 (430)
T PRK00178 352 DGNFHVAAQDL-QRGSVRILTD---TSLD--ESP--SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREP 423 (430)
T ss_pred CCceEEEEEEC-CCCCEEEccC---CCCC--CCc--eECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCC
Confidence 44566777643 2234433321 1111 112 34456665655443 23888999877666664323333455
Q ss_pred ceE
Q 018593 338 LWF 340 (353)
Q Consensus 338 ~~~ 340 (353)
.|.
T Consensus 424 ~ws 426 (430)
T PRK00178 424 SWS 426 (430)
T ss_pred ccC
Confidence 553
No 89
>PF13013 F-box-like_2: F-box-like domain
Probab=80.04 E-value=1.4 Score=32.08 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHhcCCchhhhhhhccch
Q 018593 2 GFFPDEVIQQILARLPVKSLFRTKTVCK 29 (353)
Q Consensus 2 ~~LP~dll~~IL~rLp~~~l~r~r~Vck 29 (353)
.+||+||++.|+..-..+.+......|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4799999999999999988877766666
No 90
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=79.66 E-value=73 Score=32.18 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=63.9
Q ss_pred eEEEcceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEE-ECCEEEEEEecCCeEEEEEEecCCC-CCeEEE
Q 018593 204 VVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLE-CDGCLSVIEISDEWMETWVLKDYYR-DEWHSV 281 (353)
Q Consensus 204 ~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~-~~g~L~~v~~~~~~~~vw~l~~~~~-~~W~~~ 281 (353)
.|..+|..-..+.++..|-..++.+..-...-.+... ....+-- -+|.+..+...+..+.||.+++..- ..|..+
T Consensus 103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a---pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA---PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred EEecCCcEEEeecCceeEEEEeccccchheeecccCC---ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence 4455566666666666677777666543333222221 1112221 2356655555778889999876432 445444
Q ss_pred Eeecc-ccccCccceeeeeecCCcEEEEEeCCcEEEEECCCCeEEEeeeec
Q 018593 282 DKVSL-RCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 282 ~~i~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~~~~~~v~~~~ 331 (353)
..-.. ..-....++. +--++|.+++...++.+.+|+.++ |+....+.
T Consensus 180 ~k~n~~~~s~i~~~~a-W~Pk~g~la~~~~d~~Vkvy~r~~--we~~f~Lr 227 (933)
T KOG1274|consen 180 DKDNEFILSRICTRLA-WHPKGGTLAVPPVDNTVKVYSRKG--WELQFKLR 227 (933)
T ss_pred Cccccccccceeeeee-ecCCCCeEEeeccCCeEEEEccCC--ceeheeec
Confidence 22211 1111112233 444568877777788888988765 44444443
No 91
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.36 E-value=54 Score=31.56 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=64.1
Q ss_pred CceEEEcceEEeeecCCCEEEEEECCCc--eEEEe-eCCCCCCC-----CCceeEEEECCEEEEEEecCCeEEEEEEecC
Q 018593 202 NQVVFVNGALHWLTDSCSFILALDLEGD--VWRKI-SLPDKVGS-----ESRSYLLECDGCLSVIEISDEWMETWVLKDY 273 (353)
Q Consensus 202 ~~~v~~~g~ly~~~~~~~~i~~~D~~~~--~~~~~-~~P~~~~~-----~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~ 273 (353)
..+++.+|.+|..+... .+.++|..++ .|+.- ..|..... .....++..+|++++...+. .+..++..
T Consensus 63 stPvv~~g~vyv~s~~g-~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg---~l~ALDa~ 138 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA---RLVALDAK 138 (527)
T ss_pred cCCEEECCEEEEECCCC-cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCC---EEEEEECC
Confidence 34688899999987765 8999998875 47654 23322110 01223455667777654332 34555432
Q ss_pred -CCCCeEEEEeeccc-cccCccceeeeeecCCcEEEEEe-------CCcEEEEECCCCeEEEee
Q 018593 274 -YRDEWHSVDKVSLR-CIKGMVPSIFPISQTREYVFLAT-------HKQVLVYHRNGRLWKEMY 328 (353)
Q Consensus 274 -~~~~W~~~~~i~~~-~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~yd~~~~~~~~v~ 328 (353)
++..|..... ... .......++ . .++. |++.. .+.+..||.+|++..+-.
T Consensus 139 TGk~~W~~~~~-~~~~~~~~tssP~-v--~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 139 TGKVVWSKKNG-DYKAGYTITAAPL-V--VKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCCEEeecccc-cccccccccCCcE-E--ECCE-EEEeecccccCCCcEEEEEECCCCceeEec
Confidence 3356765321 111 111112232 1 2444 55543 245999999999766554
No 92
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.54 E-value=79 Score=32.00 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=25.9
Q ss_pred CceEEEcceEEeeecCCCEEEEEECCCc--eEEEe
Q 018593 202 NQVVFVNGALHWLTDSCSFILALDLEGD--VWRKI 234 (353)
Q Consensus 202 ~~~v~~~g~ly~~~~~~~~i~~~D~~~~--~~~~~ 234 (353)
..++.++|++|..+... .+.++|..|+ .|+.-
T Consensus 188 ~TPlvvgg~lYv~t~~~-~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPHN-KVIALDAATGKEKWKFD 221 (764)
T ss_pred cCCEEECCEEEEECCCC-eEEEEECCCCcEEEEEc
Confidence 44889999999998775 9999999875 47654
No 93
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=78.52 E-value=44 Score=29.01 Aligned_cols=199 Identities=15% Similarity=0.076 Sum_probs=94.0
Q ss_pred CeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceE
Q 018593 95 NGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKC 174 (353)
Q Consensus 95 ~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 174 (353)
++..+++. .+.+.+.|||-.|......-|+|.. +.+ .-+|.|++ +.|+.| +-...+
T Consensus 66 Dsr~ivSa-SqDGklIvWDs~TtnK~haipl~s~---------WVM--tCA~sPSg---~~VAcG---------GLdN~C 121 (343)
T KOG0286|consen 66 DSRRIVSA-SQDGKLIVWDSFTTNKVHAIPLPSS---------WVM--TCAYSPSG---NFVACG---------GLDNKC 121 (343)
T ss_pred CcCeEEee-ccCCeEEEEEcccccceeEEecCce---------eEE--EEEECCCC---CeEEec---------CcCcee
Confidence 44444443 4667889999988766654444433 222 34555543 233322 124577
Q ss_pred EEEEcCCCcEEEeeec-cccceeeeeecCceEEEcceEEeeecCC-CEEEEEECCCceEEEeeCCCCCCCCCceeEEEEC
Q 018593 175 LVFDSESNRWRKFVSV-QDYYQFSIMNRNQVVFVNGALHWLTDSC-SFILALDLEGDVWRKISLPDKVGSESRSYLLECD 252 (353)
Q Consensus 175 ~vy~s~~~~W~~~~~~-~~~~~~~~~~~~~~v~~~g~ly~~~~~~-~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~ 252 (353)
.||+..+..=+....+ ..+ +-...+....-+.++. +-+++++ ....-.|+++.+-...-- .+..+-....+..++
T Consensus 122 siy~ls~~d~~g~~~v~r~l-~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSREL-AGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSD 198 (343)
T ss_pred EEEecccccccccceeeeee-cCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCC
Confidence 7998774311111000 111 1111111223333322 2222222 466667777765433211 111110223334457
Q ss_pred CEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCeEEEee
Q 018593 253 GCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRLWKEMY 328 (353)
Q Consensus 253 g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~~~v~ 328 (353)
++.++-+..+....+|-+.+. .+.-..++.+..+..+ .+..+|.-+..+.+.. .-+||++.+.=..++
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~-------~c~qtF~ghesDINsv-~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSG-------QCVQTFEGHESDINSV-RFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred CCeEEecccccceeeeeccCc-------ceeEeecccccccceE-EEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 788887776677788866441 1111122344444455 5566666333333333 778888886544443
No 94
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.55 E-value=53 Score=28.87 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=66.7
Q ss_pred eEEEcceEEeeecCCCEEEEEECCCceE-EEeeCCCCCCCCCceeEEEECCEE---EEEEe-cCCeEEEEEEecCCCCCe
Q 018593 204 VVFVNGALHWLTDSCSFILALDLEGDVW-RKISLPDKVGSESRSYLLECDGCL---SVIEI-SDEWMETWVLKDYYRDEW 278 (353)
Q Consensus 204 ~v~~~g~ly~~~~~~~~i~~~D~~~~~~-~~~~~P~~~~~~~~~~l~~~~g~L---~~v~~-~~~~~~vw~l~~~~~~~W 278 (353)
.|.++|..-.-++.+..|..||+.+..= ..+--+... ..-....+.+ .++.+ ++..+.+|.. +.|
T Consensus 48 avAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~Hags-----itaL~F~~~~S~shLlS~sdDG~i~iw~~-----~~W 117 (362)
T KOG0294|consen 48 ALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGS-----ITALKFYPPLSKSHLLSGSDDGHIIIWRV-----GSW 117 (362)
T ss_pred EEEecceeEeccCCCCcEEEEeccchhhhcceeccccc-----eEEEEecCCcchhheeeecCCCcEEEEEc-----CCe
Confidence 7888886555555558999999987642 222112111 1111122222 45555 7788899955 569
Q ss_pred EEEEeeccccccCccceeeeeecCCcEEEE-EeCCcEEEEECCCCeEEEeeeeccCccc
Q 018593 279 HSVDKVSLRCIKGMVPSIFPISQTREYVFL-ATHKQVLVYHRNGRLWKEMYSVKYGSTL 336 (353)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~yd~~~~~~~~v~~~~~~~~~ 336 (353)
..+..+... ...+..+ .+...+++-+. ++++.+-.+|+-+++--.+..++.-+..
T Consensus 118 ~~~~slK~H--~~~Vt~l-siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~ 173 (362)
T KOG0294|consen 118 ELLKSLKAH--KGQVTDL-SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATL 173 (362)
T ss_pred EEeeeeccc--cccccee-EecCCCceEEEEcCCceeeeehhhcCccceeeccCCccee
Confidence 888877652 1113444 55556663332 2333366777766666666666544333
No 95
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=76.30 E-value=55 Score=28.94 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=42.0
Q ss_pred eecCceEEEcceEEeeecCCCEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEe
Q 018593 199 MNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEI 260 (353)
Q Consensus 199 ~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~ 260 (353)
.....+-..+|++|.+......+..+|+++++++.+ .+|... .-|+-. |.+.+|+.
T Consensus 203 smPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~-----rGL~f~-G~llvVgm 259 (335)
T TIGR03032 203 SMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFT-----RGLAFA-GDFAFVGL 259 (335)
T ss_pred cCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCC-----ccccee-CCEEEEEe
Confidence 344557788999999987767999999999999998 788644 222333 77777765
No 96
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=74.57 E-value=8.9 Score=21.86 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=18.4
Q ss_pred ceEEEcceEEeeecCCCEEEEEECCC
Q 018593 203 QVVFVNGALHWLTDSCSFILALDLEG 228 (353)
Q Consensus 203 ~~v~~~g~ly~~~~~~~~i~~~D~~~ 228 (353)
.+++.+|.+|..+..+ .+.++|.++
T Consensus 16 ~~~v~~g~vyv~~~dg-~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDG-NLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTS-EEEEEETT-
T ss_pred CCEEECCEEEEEcCCC-EEEEEeCCC
Confidence 3577899999998876 999999875
No 97
>PRK05137 tolB translocation protein TolB; Provisional
Probab=71.72 E-value=87 Score=29.18 Aligned_cols=197 Identities=12% Similarity=0.092 Sum_probs=95.2
Q ss_pred CCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcE
Q 018593 105 EMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRW 184 (353)
Q Consensus 105 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W 184 (353)
....++++|+.+++...+...+.. .. +..+.+ ++-+++... . .++...+.+++.+++.-
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g~---------~~---~~~~SP--DG~~la~~~-----~--~~g~~~Iy~~d~~~~~~ 282 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPGM---------TF---APRFSP--DGRKVVMSL-----S--QGGNTDIYTMDLRSGTT 282 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCCc---------cc---CcEECC--CCCEEEEEE-----e--cCCCceEEEEECCCCce
Confidence 346899999999988776543321 01 222333 222333221 1 22345677778887766
Q ss_pred EEeeeccccceeeeeecCceEEEcc-eEEeeecCC--CEEEEEECCCceEEEeeCCCCCCCCCceeEEEECC-EEEEEEe
Q 018593 185 RKFVSVQDYYQFSIMNRNQVVFVNG-ALHWLTDSC--SFILALDLEGDVWRKISLPDKVGSESRSYLLECDG-CLSVIEI 260 (353)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~g-~ly~~~~~~--~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g-~L~~v~~ 260 (353)
+..+..... .. .....-+| .|++..... ..|..+|..++....+....... ..... .-+| .|.++..
T Consensus 283 ~~Lt~~~~~-~~-----~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~--~~~~~-SpdG~~ia~~~~ 353 (435)
T PRK05137 283 TRLTDSPAI-DT-----SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY--STPVW-SPRGDLIAFTKQ 353 (435)
T ss_pred EEccCCCCc-cC-----ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc--cCeEE-CCCCCEEEEEEc
Confidence 555221110 00 11122233 244444321 36888888877666653221110 11111 1244 4444443
Q ss_pred cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC-------CcEEEEECCCCeEEEeeeeccC
Q 018593 261 SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH-------KQVLVYHRNGRLWKEMYSVKYG 333 (353)
Q Consensus 261 ~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~yd~~~~~~~~v~~~~~~ 333 (353)
......||.++-.+ ..... +.... . .... .+..+|+.+++... ..++.+|+.+++.+.+.. .+.
T Consensus 354 ~~~~~~i~~~d~~~-~~~~~---lt~~~-~--~~~p-~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~-~~~ 424 (435)
T PRK05137 354 GGGQFSIGVMKPDG-SGERI---LTSGF-L--VEGP-TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT-PGD 424 (435)
T ss_pred CCCceEEEEEECCC-CceEe---ccCCC-C--CCCC-eECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC-CCC
Confidence 44446677664322 22222 11111 1 1222 34556665554322 259999999988887753 444
Q ss_pred ccccceE
Q 018593 334 STLPLWF 340 (353)
Q Consensus 334 ~~~~~~~ 340 (353)
...|.|.
T Consensus 425 ~~~p~Ws 431 (435)
T PRK05137 425 ASDPAWS 431 (435)
T ss_pred ccCcccC
Confidence 4567774
No 98
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=71.39 E-value=85 Score=28.92 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=62.1
Q ss_pred EEcceEEeeecCC---CEEEEEECCCce---EEEeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeE
Q 018593 206 FVNGALHWLTDSC---SFILALDLEGDV---WRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWH 279 (353)
Q Consensus 206 ~~~g~ly~~~~~~---~~i~~~D~~~~~---~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~ 279 (353)
..++.+|+++... ..++++|+.+.. |..+-.|..... .-..+...++.|++....+..-.|.+++-. ..|.
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~--~~~~ 361 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV-SLEDVSLFKDYLVLSYRENGSSRLRVYDLD--DGKE 361 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE-EEEEEEEETTEEEEEEEETTEEEEEEEETT---TEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce-eEEEEEEECCEEEEEEEECCccEEEEEECC--CCcE
Confidence 4478888887654 689999999865 664433322210 123344567888887775544455544332 1344
Q ss_pred EEEeeccccccCccceeeeeecCCcEEEEEeC-----CcEEEEECCCCeEEEee
Q 018593 280 SVDKVSLRCIKGMVPSIFPISQTREYVFLATH-----KQVLVYHRNGRLWKEMY 328 (353)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~yd~~~~~~~~v~ 328 (353)
.. .++++.... +... ....+++.+++... ..++.||+++++.+.+.
T Consensus 362 ~~-~~~~p~~g~-v~~~-~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 362 SR-EIPLPEAGS-VSGV-SGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EE-EEESSSSSE-EEEE-ES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred Ee-eecCCcceE-Eecc-CCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 32 333322111 1122 22233444555432 34999999999999874
No 99
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.93 E-value=74 Score=28.04 Aligned_cols=206 Identities=14% Similarity=0.092 Sum_probs=106.3
Q ss_pred CCCceEEEEcccccceee-ccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCC
Q 018593 104 PEMGVYYVCNPMTREWKL-LPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESN 182 (353)
Q Consensus 104 ~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~ 182 (353)
......+|+|+.+++... +.+++... ++-+.. | + .++-.++... ...+.+.-.+-|||.. +
T Consensus 25 RPG~~~~v~D~~~g~~~~~~~a~~gRH---FyGHg~-----f--s--~dG~~LytTE-----nd~~~g~G~IgVyd~~-~ 86 (305)
T PF07433_consen 25 RPGTFALVFDCRTGQLLQRLWAPPGRH---FYGHGV-----F--S--PDGRLLYTTE-----NDYETGRGVIGVYDAA-R 86 (305)
T ss_pred CCCcEEEEEEcCCCceeeEEcCCCCCE---EecCEE-----E--c--CCCCEEEEec-----cccCCCcEEEEEEECc-C
Confidence 345578899999998664 54444331 222221 1 1 1222344431 1113346677799987 3
Q ss_pred cEEEeeec---cccceeee--eecC-ceEEEcceEEeeecCC----------CEEEEEECCCceE-EEeeCCCCCCCCCc
Q 018593 183 RWRKFVSV---QDYYQFSI--MNRN-QVVFVNGALHWLTDSC----------SFILALDLEGDVW-RKISLPDKVGSESR 245 (353)
Q Consensus 183 ~W~~~~~~---~~~~~~~~--~~~~-~~v~~~g~ly~~~~~~----------~~i~~~D~~~~~~-~~~~~P~~~~~~~~ 245 (353)
..+.+... .-- |.-. .... .-|+.||-|.--...+ -+++-+|..+++. +...+|.......-
T Consensus 87 ~~~ri~E~~s~GIG-PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 87 GYRRIGEFPSHGIG-PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CcEEEeEecCCCcC-hhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 34444111 111 1111 1222 2455565554432221 4678888888764 44477764432234
Q ss_pred eeEEEEC-CEEEEEEe-cC---C-eEEEEEEecCCCCCeEEEEeeccc---cccCccceeeeeecCCcEEEEEeC--CcE
Q 018593 246 SYLLECD-GCLSVIEI-SD---E-WMETWVLKDYYRDEWHSVDKVSLR---CIKGMVPSIFPISQTREYVFLATH--KQV 314 (353)
Q Consensus 246 ~~l~~~~-g~L~~v~~-~~---~-~~~vw~l~~~~~~~W~~~~~i~~~---~~~~~~~~~~~~~~~~~~v~~~~~--~~~ 314 (353)
..|.... |.+.+... +. . .--|... ..+ .. .....++.. .+..+.-.+ ++..++..+.+... +.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~-~~g-~~-~~~~~~p~~~~~~l~~Y~gSI-a~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALH-RRG-GA-LRLLPAPEEQWRRLNGYIGSI-AADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEE-cCC-Cc-ceeccCChHHHHhhCCceEEE-EEeCCCCEEEEECCCCCEE
Confidence 5666654 66665554 11 1 1112222 222 11 222334431 455666677 78888875555543 349
Q ss_pred EEEECCCCeEEEeeeecc
Q 018593 315 LVYHRNGRLWKEMYSVKY 332 (353)
Q Consensus 315 ~~yd~~~~~~~~v~~~~~ 332 (353)
.++|..++++.....+.+
T Consensus 242 ~~~d~~tg~~~~~~~l~D 259 (305)
T PF07433_consen 242 AVWDAATGRLLGSVPLPD 259 (305)
T ss_pred EEEECCCCCEeeccccCc
Confidence 999999999998876654
No 100
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=69.71 E-value=62 Score=27.84 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=52.7
Q ss_pred CEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCeEEEeeeec
Q 018593 253 GCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 253 g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~~~v~~~~ 331 (353)
|.+..-++.+..+.||.+.. ...|+.+..+.. +..-.++.+ +-...|+++..+.... +..|--+.++|+.+..++
T Consensus 27 g~ilAscg~Dk~vriw~~~~--~~s~~ck~vld~-~hkrsVRsv-Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE 102 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS--GDSWTCKTVLDD-GHKRSVRSV-AWSPHGRYLASASFDATVVIWKKEDGEFECVATLE 102 (312)
T ss_pred ceEEEeecCCceEEEEecCC--CCcEEEEEeccc-cchheeeee-eecCCCcEEEEeeccceEEEeecCCCceeEEeeee
Confidence 34555555788999998865 267999887765 222223444 4556777666665544 888888899999998887
Q ss_pred c
Q 018593 332 Y 332 (353)
Q Consensus 332 ~ 332 (353)
+
T Consensus 103 G 103 (312)
T KOG0645|consen 103 G 103 (312)
T ss_pred c
Confidence 5
No 101
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=67.18 E-value=1e+02 Score=28.24 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=56.5
Q ss_pred EEcce-EEeeecCCCEEEEEECCCceEE-EeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEe
Q 018593 206 FVNGA-LHWLTDSCSFILALDLEGDVWR-KISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDK 283 (353)
Q Consensus 206 ~~~g~-ly~~~~~~~~i~~~D~~~~~~~-~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~ 283 (353)
..+|+ ++-++.. ..|..|+.++..-. .+..-.. ....-...+|++.++......+.+|-++| |..+..
T Consensus 363 t~Dgk~vl~v~~d-~~i~l~~~e~~~dr~lise~~~----its~~iS~d~k~~LvnL~~qei~LWDl~e-----~~lv~k 432 (519)
T KOG0293|consen 363 TYDGKYVLLVTVD-KKIRLYNREARVDRGLISEEQP----ITSFSISKDGKLALVNLQDQEIHLWDLEE-----NKLVRK 432 (519)
T ss_pred cCCCcEEEEEecc-cceeeechhhhhhhccccccCc----eeEEEEcCCCcEEEEEcccCeeEEeecch-----hhHHHH
Confidence 33443 4444443 36666666654433 2211111 12223344689999998889999997754 444321
Q ss_pred -eccccccCccceeeeeecCC-cEEEEEeC-CcEEEEECCCCeEEEe
Q 018593 284 -VSLRCIKGMVPSIFPISQTR-EYVFLATH-KQVLVYHRNGRLWKEM 327 (353)
Q Consensus 284 -i~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~yd~~~~~~~~v 327 (353)
++.++ ..+.... |++..+ .++..+.. +.++.+|.++++...+
T Consensus 433 Y~Ghkq-~~fiIrS-CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 433 YFGHKQ-GHFIIRS-CFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred hhcccc-cceEEEe-ccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 11111 1112222 555434 42323332 3399999999877655
No 102
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.22 E-value=45 Score=27.85 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=48.7
Q ss_pred ceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeecc-cc----------ccCccceeeeeecCCcEEEEEeCCc
Q 018593 245 RSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSL-RC----------IKGMVPSIFPISQTREYVFLATHKQ 313 (353)
Q Consensus 245 ~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~-~~----------~~~~~~~~~~~~~~~~~v~~~~~~~ 313 (353)
.....+++|.-.++......+.||.++... . ....++. +- ....+..+ .+..+|.-++.-..+.
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k-~---~~~~~Si~pll~~~~~~~~~~~~~i~~~-~lt~~G~PiV~lsng~ 88 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGK-A---VLPPVSIAPLLNSSPVSDKSSSPNITSC-SLTSNGVPIVTLSNGD 88 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCe-e---ccCCccHHHHhcccccccCCCCCcEEEE-EEcCCCCEEEEEeCCC
Confidence 445566776665554467889999775521 1 1111122 11 11112223 5677887666666778
Q ss_pred EEEEECCCCeEEEeee
Q 018593 314 VLVYHRNGRLWKEMYS 329 (353)
Q Consensus 314 ~~~yd~~~~~~~~v~~ 329 (353)
.|.||.+-+.|.+|.+
T Consensus 89 ~y~y~~~L~~W~~vsd 104 (219)
T PF07569_consen 89 SYSYSPDLGCWIRVSD 104 (219)
T ss_pred EEEeccccceeEEecc
Confidence 9999999999999954
No 103
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=65.37 E-value=18 Score=19.26 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=18.5
Q ss_pred EEEcceEEeeecCCCEEEEEECCCce
Q 018593 205 VFVNGALHWLTDSCSFILALDLEGDV 230 (353)
Q Consensus 205 v~~~g~ly~~~~~~~~i~~~D~~~~~ 230 (353)
+..+|.+|.-...+ .+.++|..+++
T Consensus 3 ~~~~~~v~~~~~~g-~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGSTDG-TLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcCCC-EEEEEEcccCc
Confidence 45567888777664 99999987754
No 104
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=63.45 E-value=20 Score=33.48 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcc--eEEeeecCC-----------CEEEEEECCCceEEEeeCCC
Q 018593 172 FKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNG--ALHWLTDSC-----------SFILALDLEGDVWRKISLPD 238 (353)
Q Consensus 172 ~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g--~ly~~~~~~-----------~~i~~~D~~~~~~~~~~~P~ 238 (353)
..+.+|+-+.+.|.....-... ++-+..+.+|..-. ++|.++..- .-+-.||..++.|..+..-.
T Consensus 288 ~DFW~Y~v~e~~W~~iN~~t~~--PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt 365 (723)
T KOG2437|consen 288 ADFWAYSVKENQWTCINRDTEG--PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDT 365 (723)
T ss_pred HHHHhhcCCcceeEEeecCCCC--CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccc
Confidence 4556899999999988322212 34444555555554 777776532 46889999999999985432
Q ss_pred CCCCC----CceeEEEEC--CEEEEEEe
Q 018593 239 KVGSE----SRSYLLECD--GCLSVIEI 260 (353)
Q Consensus 239 ~~~~~----~~~~l~~~~--g~L~~v~~ 260 (353)
..+.+ ....|++-+ |-||+.++
T Consensus 366 ~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 366 AADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred cccCCcceeecceeeEecCcceEEEecC
Confidence 21111 344555554 44888776
No 105
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=62.76 E-value=1e+02 Score=26.59 Aligned_cols=144 Identities=9% Similarity=-0.013 Sum_probs=77.0
Q ss_pred CcceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCCCEEEEEECCCc-eEEEeeCCCCCCCCCceeE
Q 018593 170 GTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGD-VWRKISLPDKVGSESRSYL 248 (353)
Q Consensus 170 ~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~-~~~~~~~P~~~~~~~~~~l 248 (353)
+...+..|+..+++=... ..+ |... +......+++.||.++=.......||..+- .-..++.|. ...-|
T Consensus 66 G~S~l~~~d~~tg~~~~~---~~l-~~~~-FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~-----EGWGL 135 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQS---VPL-PPRY-FGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG-----EGWGL 135 (264)
T ss_dssp TEEEEEEEETTTSSEEEE---EE--TTT---EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SS-----S--EE
T ss_pred CcEEEEEEECCCCcEEEE---EEC-Cccc-cceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCC-----cceEE
Confidence 467888999999875444 223 2222 233367789999999877679999999863 233335552 22344
Q ss_pred EEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccc--cccC-ccceeeeeecCCcEEEEEeCC--cEEEEECCCCe
Q 018593 249 LECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLR--CIKG-MVPSIFPISQTREYVFLATHK--QVLVYHRNGRL 323 (353)
Q Consensus 249 ~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~--~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~~yd~~~~~ 323 (353)
..-+..|.+-.+ .. .++.++ . .....+.+|... +... ..--+-++ +|. |+-+... .++..|++|++
T Consensus 136 t~dg~~Li~SDG-S~--~L~~~d-P--~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~-IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 136 TSDGKRLIMSDG-SS--RLYFLD-P--ETFKEVRTIQVTDNGRPVSNLNELEYI--NGK-IYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp EECSSCEEEE-S-SS--EEEEE--T--TT-SEEEEEE-EETTEE---EEEEEEE--TTE-EEEEETTSSEEEEEETTT-B
T ss_pred EcCCCEEEEECC-cc--ceEEEC-C--cccceEEEEEEEECCEECCCcEeEEEE--cCE-EEEEeCCCCeEEEEeCCCCe
Confidence 433345554432 22 344443 2 223344444441 1110 00011122 565 6666544 49999999999
Q ss_pred EEEeeeecc
Q 018593 324 WKEMYSVKY 332 (353)
Q Consensus 324 ~~~v~~~~~ 332 (353)
++...++.+
T Consensus 207 V~~~iDls~ 215 (264)
T PF05096_consen 207 VVGWIDLSG 215 (264)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEhhH
Confidence 999887764
No 106
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=62.21 E-value=1.2e+02 Score=27.17 Aligned_cols=153 Identities=11% Similarity=0.123 Sum_probs=85.2
Q ss_pred CcceEEEEEcCCCcEEEeeeccccceeeeeecCceE-EEcce-EEeeecCCCEE--EEEECCCceEEEe----eCCCCCC
Q 018593 170 GTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVV-FVNGA-LHWLTDSCSFI--LALDLEGDVWRKI----SLPDKVG 241 (353)
Q Consensus 170 ~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v-~~~g~-ly~~~~~~~~i--~~~D~~~~~~~~~----~~P~~~~ 241 (353)
+..++.+|+..+|.-....... . +.+ ......+ .-+|+ .|.+.+-...| ..||...++++.+ .+|....
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~-v-~~G-~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAE-V-KPG-AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred CCceEEEEEcccCccccccccc-c-CCC-CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 4778999999988665552111 1 111 1112223 33454 56666554444 4555555888887 4676654
Q ss_pred CC-CceeEEE-ECCEEEEEEe-cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc----E
Q 018593 242 SE-SRSYLLE-CDGCLSVIEI-SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ----V 314 (353)
Q Consensus 242 ~~-~~~~l~~-~~g~L~~v~~-~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~ 314 (353)
.. ....+.. .+|+..+++- ..+.+.+..+++.+ ..=..+...+..+.. .+.+ -+..+|++++....+. +
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-g~L~~~~~~~teg~~--PR~F-~i~~~g~~Liaa~q~sd~i~v 317 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-GKLELVGITPTEGQF--PRDF-NINPSGRFLIAANQKSDNITV 317 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-CEEEEEEEeccCCcC--Cccc-eeCCCCCEEEEEccCCCcEEE
Confidence 33 2233333 4576666654 55566777675544 444444444443211 1233 5677888555554332 8
Q ss_pred EEEECCCCeEEEeee
Q 018593 315 LVYHRNGRLWKEMYS 329 (353)
Q Consensus 315 ~~yd~~~~~~~~v~~ 329 (353)
+.-|.+|++...+..
T Consensus 318 f~~d~~TG~L~~~~~ 332 (346)
T COG2706 318 FERDKETGRLTLLGR 332 (346)
T ss_pred EEEcCCCceEEeccc
Confidence 888999999998854
No 107
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=61.38 E-value=2.3e+02 Score=30.18 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=61.5
Q ss_pred cc-eEEeeecCCCEEEEEECCCceEEEee-----CCCCC-----CC-------CCc-eeEE-EECCEEEEEEecCCeEEE
Q 018593 208 NG-ALHWLTDSCSFILALDLEGDVWRKIS-----LPDKV-----GS-------ESR-SYLL-ECDGCLSVIEISDEWMET 267 (353)
Q Consensus 208 ~g-~ly~~~~~~~~i~~~D~~~~~~~~~~-----~P~~~-----~~-------~~~-~~l~-~~~g~L~~v~~~~~~~~v 267 (353)
+| .+|........|..||+.+.....+. .|... .+ ... ..+. ..+|.|+++...+..+.+
T Consensus 750 dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv 829 (1057)
T PLN02919 750 DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK 829 (1057)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE
Confidence 34 48887766579999999876543321 11100 00 011 1222 345888888777888888
Q ss_pred EEEecCCCCCeEEEEeeccccc---------cCccceeeeeecCCcEEEEEeC-CcEEEEECCCCeE
Q 018593 268 WVLKDYYRDEWHSVDKVSLRCI---------KGMVPSIFPISQTREYVFLATH-KQVLVYHRNGRLW 324 (353)
Q Consensus 268 w~l~~~~~~~W~~~~~i~~~~~---------~~~~~~~~~~~~~~~~v~~~~~-~~~~~yd~~~~~~ 324 (353)
|..+. .....+...+..+. ......+ ++..+|.+++..+. +.+..+|+++++.
T Consensus 830 iD~~t---g~v~tiaG~G~~G~~dG~~~~a~l~~P~GI-avd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 830 LDPAT---KRVTTLAGTGKAGFKDGKALKAQLSEPAGL-ALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCC---CeEEEEeccCCcCCCCCcccccccCCceEE-EEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 85432 32332222211110 1123345 66778884444443 3499999999876
No 108
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=61.31 E-value=1.2e+02 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.170 Sum_probs=23.3
Q ss_pred CeeEEeeecC---CCceEEEEcccccceeeccCCCCC
Q 018593 95 NGLLCCSSIP---EMGVYYVCNPMTREWKLLPKSRER 128 (353)
Q Consensus 95 ~Gll~~~~~~---~~~~~~v~NP~t~~~~~LP~~~~~ 128 (353)
+.|+++.-.+ ..-+++|+|..|++-.++..+...
T Consensus 238 G~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~a 274 (448)
T PF12458_consen 238 GNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQA 274 (448)
T ss_pred CcEEEEEeccCCCcceeEEEEecccceEEEecchhhh
Confidence 4555655432 224899999999999988766543
No 109
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=59.24 E-value=34 Score=23.88 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=14.3
Q ss_pred CEEEEEECCCceEEEe
Q 018593 219 SFILALDLEGDVWRKI 234 (353)
Q Consensus 219 ~~i~~~D~~~~~~~~~ 234 (353)
..++.||+.+++.+.+
T Consensus 37 GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred cCEEEEECCCCeEEEe
Confidence 5799999999998777
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=58.59 E-value=1.2e+02 Score=25.91 Aligned_cols=182 Identities=12% Similarity=0.047 Sum_probs=86.4
Q ss_pred CCCceEEEEcccccceee-ccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCC
Q 018593 104 PEMGVYYVCNPMTREWKL-LPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESN 182 (353)
Q Consensus 104 ~~~~~~~v~NP~t~~~~~-LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~ 182 (353)
.....+.+||+.+++... ++..... . .+.+++..+ ++++.. .....+.+|+.+++
T Consensus 50 ~~~~~v~~~d~~~~~~~~~~~~~~~~----------~---~~~~~~~g~--~l~~~~---------~~~~~l~~~d~~~~ 105 (300)
T TIGR03866 50 SDSDTIQVIDLATGEVIGTLPSGPDP----------E---LFALHPNGK--ILYIAN---------EDDNLVTVIDIETR 105 (300)
T ss_pred CCCCeEEEEECCCCcEEEeccCCCCc----------c---EEEECCCCC--EEEEEc---------CCCCeEEEEECCCC
Confidence 345678999998887654 3322111 1 234444322 333321 11336778888765
Q ss_pred cE-EEeeeccccceeeeeecCceEEEcceEEeeecCC-CEEEEEECCCceEEEe-eCCCCCCCCCceeEEE-ECCEEEEE
Q 018593 183 RW-RKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-SFILALDLEGDVWRKI-SLPDKVGSESRSYLLE-CDGCLSVI 258 (353)
Q Consensus 183 ~W-~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~-~~g~L~~v 258 (353)
.= ... +.. .....-.+.-+|.+.+.+... ..+..+|..+...... ..+... ..+.. -+|+..++
T Consensus 106 ~~~~~~---~~~----~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 106 KVLAEI---PVG----VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRP-----RFAEFTADGKELWV 173 (300)
T ss_pred eEEeEe---eCC----CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCc-----cEEEECCCCCEEEE
Confidence 31 111 100 000011222346555555433 3466678877554322 222111 12222 34655545
Q ss_pred Ee-cCCeEEEEEEecCCCCCeEEEEeecc--ccc---cCccceeeeeecCCcEEEEEe--CCcEEEEECCCCeEEEe
Q 018593 259 EI-SDEWMETWVLKDYYRDEWHSVDKVSL--RCI---KGMVPSIFPISQTREYVFLAT--HKQVLVYHRNGRLWKEM 327 (353)
Q Consensus 259 ~~-~~~~~~vw~l~~~~~~~W~~~~~i~~--~~~---~~~~~~~~~~~~~~~~v~~~~--~~~~~~yd~~~~~~~~v 327 (353)
.. .+..+.+|.++.. ..+.++.. +.. ......+ .+..+++.+++.. .+.+..||+++.+....
T Consensus 174 ~~~~~~~v~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~i-~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 174 SSEIGGTVSVIDVATR-----KVIKKITFEIPGVHPEAVQPVGI-KLTKDGKTAFVALGPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred EcCCCCEEEEEEcCcc-----eeeeeeeecccccccccCCccce-EECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 44 5678889966432 22222322 110 1111123 4566777666543 34599999988776543
No 111
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=58.20 E-value=66 Score=30.60 Aligned_cols=113 Identities=14% Similarity=0.145 Sum_probs=56.9
Q ss_pred ecCeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcc
Q 018593 93 SCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTF 172 (353)
Q Consensus 93 s~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~ 172 (353)
..+|-+|+++ .+..++.||||..++.. -.+... +....| ..-|-|.+++-.|+.- .+..
T Consensus 59 n~dG~lL~SG-SDD~r~ivWd~~~~Kll--hsI~Tg-------HtaNIF-svKFvP~tnnriv~sg----------AgDk 117 (758)
T KOG1310|consen 59 NADGELLASG-SDDTRLIVWDPFEYKLL--HSISTG-------HTANIF-SVKFVPYTNNRIVLSG----------AGDK 117 (758)
T ss_pred cCCCCEEeec-CCcceEEeecchhccee--eeeecc-------ccccee-EEeeeccCCCeEEEec----------cCcc
Confidence 4578888886 56679999999944433 333322 111111 2334444444344331 2356
Q ss_pred eEEEEEcCCCcEEEe-eeccccceeeeee-----cCc-eEEEcc-eEEeeecCCCEEEEEECCC
Q 018593 173 KCLVFDSESNRWRKF-VSVQDYYQFSIMN-----RNQ-VVFVNG-ALHWLTDSCSFILALDLEG 228 (353)
Q Consensus 173 ~~~vy~s~~~~W~~~-~~~~~~~~~~~~~-----~~~-~v~~~g-~ly~~~~~~~~i~~~D~~~ 228 (353)
.+.+||....+=+.. ..+.. +...+. -.. .+.-+| ..+|.+.++..|.-||+..
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~--~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEE--TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred eEEEEecccccccccccCccc--hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 778888653111000 00000 000000 011 333344 6888888777899999876
No 112
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=57.04 E-value=1.2e+02 Score=25.75 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=54.2
Q ss_pred CceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCC----
Q 018593 106 MGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSES---- 181 (353)
Q Consensus 106 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~---- 181 (353)
.-.-.+|||.|++.+.++..... +.... .+-+ +=+++..|. ..++...+.+|+..+
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~----FCSgg-------~~L~---dG~ll~tGG------~~~G~~~ir~~~p~~~~~~ 104 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDT----FCSGG-------AFLP---DGRLLQTGG------DNDGNKAIRIFTPCTSDGT 104 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCC----cccCc-------CCCC---CCCEEEeCC------CCccccceEEEecCCCCCC
Confidence 34568999999999988755433 21111 1111 225666542 123456777888654
Q ss_pred CcEEEeeeccccceeeeeecCceEEEcceEEeeecCC
Q 018593 182 NRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC 218 (353)
Q Consensus 182 ~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~ 218 (353)
..|.+... .| .....+......-||.+..+++..
T Consensus 105 ~~w~e~~~--~m-~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 105 CDWTESPN--DM-QSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CCceECcc--cc-cCCCccccceECCCCCEEEEeCcC
Confidence 67988721 24 444455555777789999888875
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=56.79 E-value=41 Score=30.81 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=40.7
Q ss_pred CEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCe
Q 018593 253 GCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRL 323 (353)
Q Consensus 253 g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~ 323 (353)
|-|+..+..+..+.||.+++.. .+... ++....+..+ .+.+||-++....+.. +.++|++.-+
T Consensus 359 gLifgtgt~d~~vkiwdlks~~-----~~a~F--pght~~vk~i-~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQT-----NVAKF--PGHTGPVKAI-SFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred ceEEeccCCCceEEEEEcCCcc-----ccccC--CCCCCceeEE-EeccCceEEEEEecCCeEEEEEehhhc
Confidence 4444444478899999886632 22223 3344455667 7888997666666555 9999998754
No 114
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=56.25 E-value=38 Score=23.68 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=14.2
Q ss_pred cEEEEECCCCeEEEee
Q 018593 313 QVLVYHRNGRLWKEMY 328 (353)
Q Consensus 313 ~~~~yd~~~~~~~~v~ 328 (353)
+++.||++|++.+.+.
T Consensus 38 Rll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 38 RLLRYDPSTKETTVLL 53 (89)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred CEEEEECCCCeEEEeh
Confidence 4999999999998874
No 115
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=55.44 E-value=1.7e+02 Score=26.84 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=85.9
Q ss_pred CceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEE
Q 018593 106 MGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWR 185 (353)
Q Consensus 106 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~ 185 (353)
...++++|..+++...+...... .. +..+.+. +-+++... . .++...+.+++.+++..+
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~---------~~---~~~~spD--g~~l~~~~-----~--~~~~~~i~~~d~~~~~~~ 271 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGM---------NG---APAFSPD--GSKLAVSL-----S--KDGNPDIYVMDLDGKQLT 271 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCC---------cc---ceEECCC--CCEEEEEE-----C--CCCCccEEEEECCCCCEE
Confidence 35789999998876665443221 11 2333332 22333321 1 223456778888887666
Q ss_pred EeeeccccceeeeeecCceEEEcc-eEEeeecCC--CEEEEEECCCceEEEeeCCCCCCCCCceeEEE-ECCEEEEEEe-
Q 018593 186 KFVSVQDYYQFSIMNRNQVVFVNG-ALHWLTDSC--SFILALDLEGDVWRKISLPDKVGSESRSYLLE-CDGCLSVIEI- 260 (353)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~~g-~ly~~~~~~--~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~-~~g~L~~v~~- 260 (353)
........ .... ...-+| .|++..... ..|..+|+.+.....+...... ...... -+|+..++..
T Consensus 272 ~l~~~~~~-~~~~-----~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~----~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 272 RLTNGPGI-DTEP-----SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY----NASPSWSPDGDLIAFVHR 341 (417)
T ss_pred ECCCCCCC-CCCE-----EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC----ccCeEECCCCCEEEEEEc
Confidence 55221111 0011 111244 455554332 3688888888777655332211 112222 3465555544
Q ss_pred cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC-C---cEEEEECCCCeEEEe
Q 018593 261 SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH-K---QVLVYHRNGRLWKEM 327 (353)
Q Consensus 261 ~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~---~~~~yd~~~~~~~~v 327 (353)
......|+.++-.+ ..+..+ ...... ... .+..+|..+++... + .++.++.+.+.-..+
T Consensus 342 ~~~~~~i~~~d~~~-~~~~~l---~~~~~~---~~p-~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 342 EGGGFNIAVMDLDG-GGERVL---TDTGLD---ESP-SFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred cCCceEEEEEeCCC-CCeEEc---cCCCCC---CCc-eECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 44556677664322 333222 211111 111 33445554444332 2 267777666655555
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=54.82 E-value=1.5e+02 Score=26.05 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=56.5
Q ss_pred cceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEEECCEEEEEEe-cCCeEEEEEEecCCCCCeEEEEeecc
Q 018593 208 NGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEI-SDEWMETWVLKDYYRDEWHSVDKVSL 286 (353)
Q Consensus 208 ~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~-~~~~~~vw~l~~~~~~~W~~~~~i~~ 286 (353)
+|..-+.+..+..+-.+|+.+++-..+.+-.... ...+.+...+.=|++++ -+..+.-|-+.. =..+.+|.+
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pv--kt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-----~~pv~t~~L 155 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPV--KTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-----SNPVATLQL 155 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCeeeeeecccce--eEEEEecCCCcceeEecccccceeecccCC-----CCeeeeeec
Confidence 3555555555568999999999888775443321 12333332233366766 677889995533 236667776
Q ss_pred ccccCccceeeeeecCCcEEEEEeC-CcEEEEECCCC
Q 018593 287 RCIKGMVPSIFPISQTREYVFLATH-KQVLVYHRNGR 322 (353)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~yd~~~~ 322 (353)
+..-+ +.+.....+++.+. +.+..||+++.
T Consensus 156 PeRvY------a~Dv~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 156 PERVY------AADVLYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred cceee------ehhccCceeEEEecCCcEEEEEcCCC
Confidence 53222 22222233444443 33777777554
No 117
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=53.35 E-value=75 Score=27.75 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=40.4
Q ss_pred CCEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEE-eCCcEEEEECCCCeEEE
Q 018593 252 DGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLA-THKQVLVYHRNGRLWKE 326 (353)
Q Consensus 252 ~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~yd~~~~~~~~ 326 (353)
+|.+++-++.+..+-+|...++.++-|+.. +..+.+-.+ -...++..++.. ++..+..+|.+|++-.+
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk------gHsgAVM~l-~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDCENFWVLK------GHSGAVMEL-HGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred CCCeEeecCCcceEEEEeccccccceeeec------cccceeEee-eeccCCCEEEEecCCceEEEEecccceeee
Confidence 455555555778888998655444778875 222222222 223355545544 45569999999987553
No 118
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=52.87 E-value=1.5e+02 Score=27.68 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=58.2
Q ss_pred EEEEEECCCceEEEe-eCCCCCCCCCceeEEEECC-EEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceee
Q 018593 220 FILALDLEGDVWRKI-SLPDKVGSESRSYLLECDG-CLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIF 297 (353)
Q Consensus 220 ~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g-~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~ 297 (353)
.+...|+.++.-..+ ..+... ..... .-+| +|.+....+...+||.++..+...+.+... .+... .+.
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~---~~P~f-spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~---~gi~~--~Ps- 288 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNN---GAPAF-SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG---FGINT--SPS- 288 (425)
T ss_pred eEEEEeccCCccceeeccCCcc---CCccC-CCCCCEEEEEECCCCCccEEEEcCCCCcceecccC---Ccccc--Ccc-
Confidence 577777777665544 444332 11221 1244 444444467888999996655443331111 12221 222
Q ss_pred eeecCCcEEEEEeCCc----EEEEECCCCeEEEeeeeccCccccce
Q 018593 298 PISQTREYVFLATHKQ----VLVYHRNGRLWKEMYSVKYGSTLPLW 339 (353)
Q Consensus 298 ~~~~~~~~v~~~~~~~----~~~yd~~~~~~~~v~~~~~~~~~~~~ 339 (353)
...+|+.+++.++.. ++.||++++..+.+-.-.+....|.|
T Consensus 289 -~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~ 333 (425)
T COG0823 289 -WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVW 333 (425)
T ss_pred -CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccC
Confidence 344566566555432 99999999998877433333234444
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=51.86 E-value=2.1e+02 Score=26.77 Aligned_cols=146 Identities=5% Similarity=-0.019 Sum_probs=77.7
Q ss_pred eEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEE
Q 018593 97 LLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLV 176 (353)
Q Consensus 97 ll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~v 176 (353)
.++.. ....-++.||-.|++..++-++.... . ...- -|...+.. . .+++ .+....+.+
T Consensus 272 ~i~~s--~rrky~ysyDle~ak~~k~~~~~g~e----~-~~~e---~FeVShd~-~--fia~---------~G~~G~I~l 329 (514)
T KOG2055|consen 272 VIFTS--GRRKYLYSYDLETAKVTKLKPPYGVE----E-KSME---RFEVSHDS-N--FIAI---------AGNNGHIHL 329 (514)
T ss_pred EEEec--ccceEEEEeeccccccccccCCCCcc----c-chhh---eeEecCCC-C--eEEE---------cccCceEEe
Confidence 34444 56678999999999999887765431 0 1111 23222221 2 3333 122456777
Q ss_pred EEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEE-EECCEE
Q 018593 177 FDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLL-ECDGCL 255 (353)
Q Consensus 177 y~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~-~~~g~L 255 (353)
....|+.|-..=..+.. -... ...-+|+.-|+.+....+..+|+.++.....-.-.... ....+. ..+|.+
T Consensus 330 LhakT~eli~s~KieG~-v~~~-----~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v--~gts~~~S~ng~y 401 (514)
T KOG2055|consen 330 LHAKTKELITSFKIEGV-VSDF-----TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV--HGTSLCISLNGSY 401 (514)
T ss_pred ehhhhhhhhheeeeccE-EeeE-----EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc--ceeeeeecCCCce
Confidence 88888888544111111 0111 12245565565554458999999998544332222221 233333 346775
Q ss_pred EEEEecCCeEEEEEEec
Q 018593 256 SVIEISDEWMETWVLKD 272 (353)
Q Consensus 256 ~~v~~~~~~~~vw~l~~ 272 (353)
+.++.+...+.|+..+.
T Consensus 402 lA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 402 LATGSDSGIVNIYDGNS 418 (514)
T ss_pred EEeccCcceEEEeccch
Confidence 44444777788886543
No 120
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=51.81 E-value=1.6e+02 Score=25.64 Aligned_cols=66 Identities=12% Similarity=0.226 Sum_probs=44.7
Q ss_pred cceEEEEEcCCCcEEEeeeccccceeee-eecCceEEEcceEEeeecCCCEEEEEECCCceEEEeeC
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDYYQFSI-MNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISL 236 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~-~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~~~ 236 (353)
-..+++||..+.+|.....--.-.-... .....-+++.|.+-.-......+..||..+.+|+.+.-
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 3578899999999988832100000111 22455788888877766333589999999999988743
No 121
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=51.81 E-value=81 Score=23.10 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=27.5
Q ss_pred ceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEE
Q 018593 107 GVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLA 158 (353)
Q Consensus 107 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~ 158 (353)
-.++++||.|+.|..+-+.+.. ...+ .+-.++..+.|+|+..
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~~---------ls~V-~~~~~~~~~~yrIvg~ 50 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQG---------FSRV-QIYHHPRNNTFRVVGR 50 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCCC---------cceE-EEEEcCCCCEEEEEEe
Confidence 4678999999997755332111 1111 5666777789999976
No 122
>PF15408 PH_7: Pleckstrin homology domain
Probab=51.69 E-value=7.9 Score=26.44 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=19.4
Q ss_pred hhhhhhhccchhhhhhcCChHHH
Q 018593 19 KSLFRTKTVCKLWNKLTSDKYFI 41 (353)
Q Consensus 19 ~~l~r~r~Vck~W~~li~~~~F~ 41 (353)
+.++..+.|||+|.+++.+|.|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 55666788999999999999985
No 123
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=51.67 E-value=43 Score=24.29 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=28.9
Q ss_pred CceEEEEccccc-ceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEe
Q 018593 106 MGVYYVCNPMTR-EWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAG 159 (353)
Q Consensus 106 ~~~~~v~NP~t~-~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 159 (353)
.-.++++||.|+ .|.+.-+. . ..+ -+-+|+..+.|+|+.+.
T Consensus 10 rA~V~~yd~~tKk~WvPs~~~--~----------~~V-~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASKH--A----------VTV-SYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeCCCC--c----------eeE-EEEecCCCcEEEEEEec
Confidence 457899999986 78754321 1 122 57788888999999873
No 124
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.91 E-value=2.6e+02 Score=27.79 Aligned_cols=63 Identities=14% Similarity=0.288 Sum_probs=39.9
Q ss_pred EEEEEECCCceEEEeeCCCCCCCC---CceeEEEECCEEEEEEecCCeEEEEEEecCCC-CCeEEEEeec
Q 018593 220 FILALDLEGDVWRKISLPDKVGSE---SRSYLLECDGCLSVIEISDEWMETWVLKDYYR-DEWHSVDKVS 285 (353)
Q Consensus 220 ~i~~~D~~~~~~~~~~~P~~~~~~---~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~-~~W~~~~~i~ 285 (353)
.|...|..+.+-. +|...... .....++.++...+......-+.+|.++...- .+|.-.+.=|
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P 107 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP 107 (775)
T ss_pred eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCC
Confidence 6888899888875 44332221 34455556655555555788899999965322 7787765544
No 125
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=49.90 E-value=93 Score=27.59 Aligned_cols=95 Identities=17% Similarity=0.315 Sum_probs=46.3
Q ss_pred cEEEeeecccccee---ee-eecCceEEE-cceEEeeecCC-------CEEEEEECC-CceEEEe-eC-CCCCCCCCcee
Q 018593 183 RWRKFVSVQDYYQF---SI-MNRNQVVFV-NGALHWLTDSC-------SFILALDLE-GDVWRKI-SL-PDKVGSESRSY 247 (353)
Q Consensus 183 ~W~~~~~~~~~~~~---~~-~~~~~~v~~-~g~ly~~~~~~-------~~i~~~D~~-~~~~~~~-~~-P~~~~~~~~~~ 247 (353)
.|......+..... .. .....+|.. ||+|-+-.... .+++.|-.. ...|..- -+ |..+ ..+.
T Consensus 101 ~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~gC---~~ps 177 (310)
T PF13859_consen 101 KWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAGC---SDPS 177 (310)
T ss_dssp EE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT----EEEE
T ss_pred eeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCCc---ceEE
Confidence 59877544333111 11 122235555 67766543321 357777776 5678765 33 3444 6799
Q ss_pred EEEE-CCEEEEEEe-cCCeEEEEEEecCCCCCeEEE
Q 018593 248 LLEC-DGCLSVIEI-SDEWMETWVLKDYYRDEWHSV 281 (353)
Q Consensus 248 l~~~-~g~L~~v~~-~~~~~~vw~l~~~~~~~W~~~ 281 (353)
++|. +|+|.|+.. ++..-.|+.-.|.+ ..|++.
T Consensus 178 v~EWe~gkLlM~~~c~~g~rrVYeS~DmG-~tWtea 212 (310)
T PF13859_consen 178 VVEWEDGKLLMMTACDDGRRRVYESGDMG-TTWTEA 212 (310)
T ss_dssp EEEE-TTEEEEEEE-TTS---EEEESSTT-SS-EE-
T ss_pred EEeccCCeeEEEEecccceEEEEEEcccc-eehhhc
Confidence 9999 799999988 55556777655544 789974
No 126
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=49.19 E-value=1.7e+02 Score=25.03 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=59.4
Q ss_pred eEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCC-CCeEEEEeecccc
Q 018593 210 ALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYR-DEWHSVDKVSLRC 288 (353)
Q Consensus 210 ~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~-~~W~~~~~i~~~~ 288 (353)
-|..-..+ ..|-+.|+.++.+....+|..... ....-+-.+|+...+.-.....-||.|-.... ..-..++.+.-
T Consensus 138 eLis~dqs-g~irvWDl~~~~c~~~liPe~~~~-i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-- 213 (311)
T KOG0315|consen 138 ELISGDQS-GNIRVWDLGENSCTHELIPEDDTS-IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-- 213 (311)
T ss_pred eEEeecCC-CcEEEEEccCCccccccCCCCCcc-eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec--
Confidence 34333334 489999999999998888877643 12222234566555544667888998855332 22222222221
Q ss_pred ccCccceeeeeecCCcEEEEEe-CCcEEEEECCCC
Q 018593 289 IKGMVPSIFPISQTREYVFLAT-HKQVLVYHRNGR 322 (353)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~~~-~~~~~~yd~~~~ 322 (353)
......-. ....+++.+.-.+ +..+..++.++-
T Consensus 214 h~~~il~C-~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 214 HNGHILRC-LLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ccceEEEE-EECCCCcEEEeecCCceEEEEecCCc
Confidence 11111122 3455666333332 234888888887
No 127
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.15 E-value=1e+02 Score=27.68 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=46.4
Q ss_pred CEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCC-cEEEEECCCCeEEEeee
Q 018593 253 GCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHK-QVLVYHRNGRLWKEMYS 329 (353)
Q Consensus 253 g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~yd~~~~~~~~v~~ 329 (353)
|..+.....+..+.+|.+.-. ..-|-+.+.++.++.+ .+..+|++++...++ .+-+||+++++=.+...
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg-------~cL~tL~ghdnwVr~~-af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTG-------MCLFTLVGHDNWVRGV-AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred ccEEEeecccceEEEEeccCC-------eEEEEEecccceeeee-EEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 445544447889999976432 2333344666777777 888889977755544 49999999987666543
No 128
>PF13854 Kelch_5: Kelch motif
Probab=48.81 E-value=48 Score=19.06 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=18.6
Q ss_pred CceeEEEECCEEEEEEe-c--CC--eEEEEEEe
Q 018593 244 SRSYLLECDGCLSVIEI-S--DE--WMETWVLK 271 (353)
Q Consensus 244 ~~~~l~~~~g~L~~v~~-~--~~--~~~vw~l~ 271 (353)
.....+..+++|+++++ . .. .-++|+++
T Consensus 6 ~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~ 38 (42)
T PF13854_consen 6 YGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLD 38 (42)
T ss_pred cceEEEEECCEEEEEcCccCCCCCEECcEEEEE
Confidence 45677778899999988 3 11 22566664
No 129
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=48.67 E-value=1e+02 Score=29.97 Aligned_cols=109 Identities=16% Similarity=0.073 Sum_probs=64.1
Q ss_pred eEEeeecCCCEEEEEECCCceEEEe-----eCCCCCCCCCceeEEEECCEEEEEEe-cCCeEEEEEEecCCCCCeEEEEe
Q 018593 210 ALHWLTDSCSFILALDLEGDVWRKI-----SLPDKVGSESRSYLLECDGCLSVIEI-SDEWMETWVLKDYYRDEWHSVDK 283 (353)
Q Consensus 210 ~ly~~~~~~~~i~~~D~~~~~~~~~-----~~P~~~~~~~~~~l~~~~g~L~~v~~-~~~~~~vw~l~~~~~~~W~~~~~ 283 (353)
.||...+. ..|..||.....|+.- ..+.+.. ..+.+.-..|...+|.. .+..+.+|.++... =+-..
T Consensus 66 iLavadE~-G~i~l~dt~~~~fr~ee~~lk~~~aH~n--AifDl~wapge~~lVsasGDsT~r~Wdvk~s~---l~G~~- 138 (720)
T KOG0321|consen 66 ILAVADED-GGIILFDTKSIVFRLEERQLKKPLAHKN--AIFDLKWAPGESLLVSASGDSTIRPWDVKTSR---LVGGR- 138 (720)
T ss_pred eEEEecCC-Cceeeecchhhhcchhhhhhcccccccc--eeEeeccCCCceeEEEccCCceeeeeeeccce---eecce-
Confidence 45555555 4899999999888821 1122211 23444545688999888 78899999886632 11111
Q ss_pred eccccccCccceeeeeecCCcEEEEEeC--CcEEEEECCCCeEEEe
Q 018593 284 VSLRCIKGMVPSIFPISQTREYVFLATH--KQVLVYHRNGRLWKEM 327 (353)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~yd~~~~~~~~v 327 (353)
+ ..+..+.+..+ |+...+..+|..+. +.+.++|.+.+....+
T Consensus 139 ~-~~GH~~SvkS~-cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~ 182 (720)
T KOG0321|consen 139 L-NLGHTGSVKSE-CFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL 182 (720)
T ss_pred e-ecccccccchh-hhccCCCcceeeccCCCcEEEEEEeccchhhH
Confidence 1 12344445555 66554443554433 3488999988874444
No 130
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=48.23 E-value=1.4e+02 Score=26.15 Aligned_cols=72 Identities=14% Similarity=0.054 Sum_probs=42.2
Q ss_pred CCEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC-CcEEEEECCCCeEEEeee
Q 018593 252 DGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH-KQVLVYHRNGRLWKEMYS 329 (353)
Q Consensus 252 ~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~yd~~~~~~~~v~~ 329 (353)
.+.|..++.-+..+.+|.+++.+. =+-.....+.+. +--+ +-..+|..+|.+.. +.+-+||+.++....|..
T Consensus 39 ~~~~~~A~SWD~tVR~wevq~~g~--~~~ka~~~~~~P---vL~v-~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 39 ADNLLAAGSWDGTVRIWEVQNSGQ--LVPKAQQSHDGP---VLDV-CWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA 111 (347)
T ss_pred cCceEEecccCCceEEEEEecCCc--ccchhhhccCCC---eEEE-EEccCCceEEeeccCCceEEEEccCCCeeeeee
Confidence 345555555778999999977542 111111111110 1112 33456666777754 459999999999998843
No 131
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=47.28 E-value=1.8e+02 Score=26.16 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=69.6
Q ss_pred cCeeEEeeec-------CCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCC
Q 018593 94 CNGLLCCSSI-------PEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGH 166 (353)
Q Consensus 94 ~~Gll~~~~~-------~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~ 166 (353)
+.|.-|+.-. -..+.+-||+-.+.+...+-.-... . .+ -+-||. +|+.-|
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG---------S-VL-CLqyd~-----rviisG------- 253 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTG---------S-VL-CLQYDE-----RVIVSG------- 253 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCC---------c-EE-eeeccc-----eEEEec-------
Confidence 3566665521 2345778888877776554322221 1 11 344443 344432
Q ss_pred CCCCcceEEEEEcCCCcEEEeeeccccceeeeeec-Cc---eEEEcceEEeeecCCCEEEEEECCCceEEEe--eCCCCC
Q 018593 167 RPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNR-NQ---VVFVNGALHWLTDSCSFILALDLEGDVWRKI--SLPDKV 240 (353)
Q Consensus 167 ~~~~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~-~~---~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~--~~P~~~ 240 (353)
+....+.|+|-.++. .+ ...... .. -++-+|.+--.... .+|.+.|+.+-+-..+ -+-.+.
T Consensus 254 --SSDsTvrvWDv~tge--------~l--~tlihHceaVLhlrf~ng~mvtcSkD-rsiaVWdm~sps~it~rrVLvGHr 320 (499)
T KOG0281|consen 254 --SSDSTVRVWDVNTGE--------PL--NTLIHHCEAVLHLRFSNGYMVTCSKD-RSIAVWDMASPTDITLRRVLVGHR 320 (499)
T ss_pred --CCCceEEEEeccCCc--------hh--hHHhhhcceeEEEEEeCCEEEEecCC-ceeEEEeccCchHHHHHHHHhhhh
Confidence 235677788866652 11 111111 11 23344544444444 4788888776541100 011111
Q ss_pred CCCCceeEEEECCEEEEEEe-cCCeEEEEEEec
Q 018593 241 GSESRSYLLECDGCLSVIEI-SDEWMETWVLKD 272 (353)
Q Consensus 241 ~~~~~~~l~~~~g~L~~v~~-~~~~~~vw~l~~ 272 (353)
.....+..+++ ++|.. .+..+.+|.+.-
T Consensus 321 ---AaVNvVdfd~k-yIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 321 ---AAVNVVDFDDK-YIVSASGDRTIKVWSTST 349 (499)
T ss_pred ---hheeeeccccc-eEEEecCCceEEEEeccc
Confidence 34556677788 55555 788999997744
No 132
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=46.83 E-value=2.3e+02 Score=25.86 Aligned_cols=107 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred cceEEeeecCCCEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeecc
Q 018593 208 NGALHWLTDSCSFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSL 286 (353)
Q Consensus 208 ~g~ly~~~~~~~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~ 286 (353)
++.+|........+...|..+.+--.. +..... .......-+|+..++...+..+.++ |....+ .+.++.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~---h~~~~~s~Dgr~~yv~~rdg~vsvi---D~~~~~--~v~~i~- 75 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAP---HAGLKFSPDGRYLYVANRDGTVSVI---DLATGK--VVATIK- 75 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE---EEEEE-TT-SSEEEEEETTSEEEEE---ETTSSS--EEEEEE-
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc---eeEEEecCCCCEEEEEcCCCeEEEE---ECCccc--EEEEEe-
Q ss_pred ccccCccceeeeeecCCcEEEEEeCCc--EEEEECCCCeEEE
Q 018593 287 RCIKGMVPSIFPISQTREYVFLATHKQ--VLVYHRNGRLWKE 326 (353)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~yd~~~~~~~~ 326 (353)
.......+ .+..+|+.++...+.. +..+|.+|.+..+
T Consensus 76 --~G~~~~~i-~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 76 --VGGNPRGI-AVSPDGKYVYVANYEPGTVSVIDAETLEPVK 114 (369)
T ss_dssp ---SSEEEEE-EE--TTTEEEEEEEETTEEEEEETTT--EEE
T ss_pred --cCCCcceE-EEcCCCCEEEEEecCCCceeEecccccccee
No 133
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=45.84 E-value=14 Score=32.68 Aligned_cols=35 Identities=20% Similarity=0.554 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHhcCCc--------hhhhhhhccchhhhhhcC
Q 018593 2 GFFPDEVIQQILARLPV--------KSLFRTKTVCKLWNKLTS 36 (353)
Q Consensus 2 ~~LP~dll~~IL~rLp~--------~~l~r~r~Vck~W~~li~ 36 (353)
+.||.++|.+|+.|..- +..+.+..||+.||....
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~ 88 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISK 88 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcc
Confidence 36999999999999873 478889999999998754
No 134
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=45.04 E-value=2e+02 Score=24.57 Aligned_cols=114 Identities=10% Similarity=0.116 Sum_probs=67.4
Q ss_pred ceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEE--EECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeecc
Q 018593 209 GALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLL--ECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSL 286 (353)
Q Consensus 209 g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~--~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~ 286 (353)
|.+...++.. .+...|++++++...---... +-..++ +.+|++.- +..+....||.++.. + .+..|..
T Consensus 127 nSi~~AgGD~-~~y~~dlE~G~i~r~~rGHtD---YvH~vv~R~~~~qils-G~EDGtvRvWd~kt~---k--~v~~ie~ 196 (325)
T KOG0649|consen 127 NSILFAGGDG-VIYQVDLEDGRIQREYRGHTD---YVHSVVGRNANGQILS-GAEDGTVRVWDTKTQ---K--HVSMIEP 196 (325)
T ss_pred CcEEEecCCe-EEEEEEecCCEEEEEEcCCcc---eeeeeeecccCcceee-cCCCccEEEEecccc---c--eeEEecc
Confidence 6677777664 899999999998865222211 122222 23355432 226778899966432 1 2333433
Q ss_pred -c---c-ccCccceeeeeecCCcEEEEEeCCcEEEEECCCCeEEEeeeecc
Q 018593 287 -R---C-IKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKY 332 (353)
Q Consensus 287 -~---~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~~~~~~v~~~~~ 332 (353)
+ . .+.....+.+++.+.+.++.+....+-+++++..+=.-+..++.
T Consensus 197 yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPA 247 (325)
T ss_pred ccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEeccc
Confidence 1 1 11112222266778887777777779999999888777766654
No 135
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=44.29 E-value=2.4e+02 Score=25.38 Aligned_cols=111 Identities=21% Similarity=0.214 Sum_probs=61.7
Q ss_pred cceEEeeecCCCEEEEEECCCceEEEe-eCCCC----CCCC---CceeEEEE---CCEEEEEEe-------cCCeEEEEE
Q 018593 208 NGALHWLTDSCSFILALDLEGDVWRKI-SLPDK----VGSE---SRSYLLEC---DGCLSVIEI-------SDEWMETWV 269 (353)
Q Consensus 208 ~g~ly~~~~~~~~i~~~D~~~~~~~~~-~~P~~----~~~~---~~~~l~~~---~g~L~~v~~-------~~~~~~vw~ 269 (353)
+|.+||++.++ .+...|+..+.-... +.+.. ...+ ...++..+ .|+||+... ....-+||+
T Consensus 195 ~~~~~F~Sy~G-~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 195 GGRLYFVSYEG-NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTEEEEEBTTS-EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCeEEEEecCC-EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 36899998886 899999888763333 11110 0011 23343433 479988654 235679999
Q ss_pred EecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEE--e-CCcEEEEECCCCeEEE
Q 018593 270 LKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLA--T-HKQVLVYHRNGRLWKE 326 (353)
Q Consensus 270 l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~--~-~~~~~~yd~~~~~~~~ 326 (353)
++- . .=.++.+++++.. ...+ .+.++..=+++. . .+.+..||..|++...
T Consensus 274 ~D~-~--t~krv~Ri~l~~~---~~Si-~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 274 YDL-K--THKRVARIPLEHP---IDSI-AVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EET-T--TTEEEEEEEEEEE---ESEE-EEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EEC-C--CCeEEEEEeCCCc---cceE-EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 854 2 2346777776422 1234 556555533332 2 2459999999985543
No 136
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=44.16 E-value=1.3e+02 Score=25.91 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=38.2
Q ss_pred eEEEcceEEeeecCC------CEEEEEECCCceEEEeeCCCCCCCCCceeEEEECCEEEEEEe
Q 018593 204 VVFVNGALHWLTDSC------SFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEI 260 (353)
Q Consensus 204 ~v~~~g~ly~~~~~~------~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~ 260 (353)
.-+.+|+||..+... ..+..-+...+.|+.+.+|..... .+......++.|++++.
T Consensus 196 vkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHh-tnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 196 VKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHH-TNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---S-S---EEEETTEEEEEEE
T ss_pred hhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccc-cCCCceeeCCEEEEEec
Confidence 557899999987654 567777777889999999965543 56778888999999886
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=44.02 E-value=2.5e+02 Score=27.52 Aligned_cols=101 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeee
Q 018593 222 LALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPIS 300 (353)
Q Consensus 222 ~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~ 300 (353)
+.+|. .-+-..+ ++|....+.....+.+-+.+|+++......+++-.++. ..=.+...+-.+.......-+ .+.
T Consensus 410 L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~---ps~kel~~~~~~~~~~~I~~l-~~S 484 (691)
T KOG2048|consen 410 LQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELET---PSFKELKSIQSQAKCPSISRL-VVS 484 (691)
T ss_pred eccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecC---cchhhhhccccccCCCcceeE-EEc
Q ss_pred cCCcEEEEEeCCc-EEEEECCCCeEEEe
Q 018593 301 QTREYVFLATHKQ-VLVYHRNGRLWKEM 327 (353)
Q Consensus 301 ~~~~~v~~~~~~~-~~~yd~~~~~~~~v 327 (353)
.+|+.+...+... +++||+++++.+.+
T Consensus 485 sdG~yiaa~~t~g~I~v~nl~~~~~~~l 512 (691)
T KOG2048|consen 485 SDGNYIAAISTRGQIFVYNLETLESHLL 512 (691)
T ss_pred CCCCEEEEEeccceEEEEEcccceeecc
No 138
>PRK04922 tolB translocation protein TolB; Provisional
Probab=42.93 E-value=2.8e+02 Score=25.78 Aligned_cols=196 Identities=14% Similarity=0.171 Sum_probs=93.0
Q ss_pred CceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEE
Q 018593 106 MGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWR 185 (353)
Q Consensus 106 ~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~ 185 (353)
...++++|..+++...+...+.. .. ...+.+ ++-+++... . .++...+.+++..++.-+
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~---------~~---~~~~Sp--DG~~l~~~~-----s--~~g~~~Iy~~d~~~g~~~ 285 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI---------NG---APSFSP--DGRRLALTL-----S--RDGNPEIYVMDLGSRQLT 285 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC---------cc---CceECC--CCCEEEEEE-----e--CCCCceEEEEECCCCCeE
Confidence 45788999988887666433221 00 122333 222333321 0 223457788888887655
Q ss_pred EeeeccccceeeeeecCceEEEcc-eEEeeecCC--CEEEEEECCCceEEEeeCCCCCCCCCceeEEEE-CC-EEEEEEe
Q 018593 186 KFVSVQDYYQFSIMNRNQVVFVNG-ALHWLTDSC--SFILALDLEGDVWRKISLPDKVGSESRSYLLEC-DG-CLSVIEI 260 (353)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~~g-~ly~~~~~~--~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~-~g-~L~~v~~ 260 (353)
........ . ......-+| .+++..... ..|..+|..++....+...... ......+ +| .|++...
T Consensus 286 ~lt~~~~~-~-----~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~----~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 286 RLTNHFGI-D-----TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY----NARASVSPDGKKIAMVHG 355 (433)
T ss_pred ECccCCCC-c-----cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC----ccCEEECCCCCEEEEEEC
Confidence 54211000 0 011222234 355554322 3578888888777665432211 1122222 45 4444444
Q ss_pred cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC----CcEEEEECCCCeEEEeeeeccCccc
Q 018593 261 SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH----KQVLVYHRNGRLWKEMYSVKYGSTL 336 (353)
Q Consensus 261 ~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~yd~~~~~~~~v~~~~~~~~~ 336 (353)
.+....|+.++- ++.....+ ...... ... ....+|+.+++... ..++.+|++++.-+.+..-.+....
T Consensus 356 ~~~~~~I~v~d~-~~g~~~~L---t~~~~~---~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~ 427 (433)
T PRK04922 356 SGGQYRIAVMDL-STGSVRTL---TPGSLD---ESP-SFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVRE 427 (433)
T ss_pred CCCceeEEEEEC-CCCCeEEC---CCCCCC---CCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCC
Confidence 444445555532 22333322 111111 112 34556665554432 2399999988776666433344455
Q ss_pred cceE
Q 018593 337 PLWF 340 (353)
Q Consensus 337 ~~~~ 340 (353)
|.|.
T Consensus 428 p~ws 431 (433)
T PRK04922 428 PAWS 431 (433)
T ss_pred CccC
Confidence 6663
No 139
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.25 E-value=4.1e+02 Score=27.44 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=55.9
Q ss_pred eEEEcc--eEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEEEC--CEEEEEEecCCeEEEEEEecCCCCCeE
Q 018593 204 VVFVNG--ALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECD--GCLSVIEISDEWMETWVLKDYYRDEWH 279 (353)
Q Consensus 204 ~v~~~g--~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~--g~L~~v~~~~~~~~vw~l~~~~~~~W~ 279 (353)
+|.+.+ -+-.-.+++..|-++|+...+--..-- .+. ....+...+ +.|+.++ .+..+.|+.++..
T Consensus 255 svlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr---ren-dRFW~laahP~lNLfAAg-HDsGm~VFkleRE------ 323 (1202)
T KOG0292|consen 255 SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR---REN-DRFWILAAHPELNLFAAG-HDSGMIVFKLERE------ 323 (1202)
T ss_pred eEEecCccceeEecCCCccEEEEecccccceeeee---ccC-CeEEEEEecCCcceeeee-cCCceEEEEEccc------
Confidence 555555 232223333688888888765221100 011 234445544 5555544 4567778877421
Q ss_pred EEEeeccccccCccceeeeeecCCcEEEEEeCCcEEEEECCCCeEEEeeeeccC
Q 018593 280 SVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYG 333 (353)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~~~~~~v~~~~~~ 333 (353)
+|. .+.+++. +|...+..+..||+.|.+=..+..++..
T Consensus 324 --------------rpa-~~v~~n~-LfYvkd~~i~~~d~~t~~d~~v~~lr~~ 361 (1202)
T KOG0292|consen 324 --------------RPA-YAVNGNG-LFYVKDRFIRSYDLRTQKDTAVASLRRP 361 (1202)
T ss_pred --------------Cce-EEEcCCE-EEEEccceEEeeeccccccceeEeccCC
Confidence 233 2222343 3433366789999999877777777754
No 140
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=40.85 E-value=29 Score=29.66 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHhcCC-chhhhhhhccchhhhhhcCC
Q 018593 2 GFFPDEVIQQILARLP-VKSLFRTKTVCKLWNKLTSD 37 (353)
Q Consensus 2 ~~LP~dll~~IL~rLp-~~~l~r~r~Vck~W~~li~~ 37 (353)
.+||.+++.+||.||| -.+|..++.|--.-..++.+
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 4799999999999999 48888877775554444443
No 141
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=39.91 E-value=4.1e+02 Score=26.86 Aligned_cols=103 Identities=9% Similarity=0.087 Sum_probs=61.8
Q ss_pred EEEECCCceEEEe---eCCCCCCCCCceeEEEEC--CEEEEEEe-cCCeEEEEEEecCCC-----CCeEEEEeecccccc
Q 018593 222 LALDLEGDVWRKI---SLPDKVGSESRSYLLECD--GCLSVIEI-SDEWMETWVLKDYYR-----DEWHSVDKVSLRCIK 290 (353)
Q Consensus 222 ~~~D~~~~~~~~~---~~P~~~~~~~~~~l~~~~--g~L~~v~~-~~~~~~vw~l~~~~~-----~~W~~~~~i~~~~~~ 290 (353)
-.||..+..|... ..|.... ......++ .+..++.. .+..+.||.++++.+ ..|.....=....
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~---~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k-- 509 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNA---FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK-- 509 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCce---eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc--
Confidence 3466777777655 6777652 22222222 12133444 678999999976543 5798865332211
Q ss_pred CccceeeeeecCCcEEEEEeCCcEEEEECCC-CeEEEeeee
Q 018593 291 GMVPSIFPISQTREYVFLATHKQVLVYHRNG-RLWKEMYSV 330 (353)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~-~~~~~v~~~ 330 (353)
.-.... ++.++|.++....++.+..||..+ ++.+.+...
T Consensus 510 ~~i~a~-~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~ 549 (792)
T KOG1963|consen 510 TPITAL-CFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGS 549 (792)
T ss_pred Ccccch-hhcCCCcEEEEecCCEEEEecCCChhhhhccccc
Confidence 112233 667789877788888899999999 555555433
No 142
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=39.47 E-value=4e+02 Score=26.57 Aligned_cols=192 Identities=16% Similarity=0.106 Sum_probs=92.5
Q ss_pred EeeecCeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCC
Q 018593 90 VRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPD 169 (353)
Q Consensus 90 ~~~s~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 169 (353)
+.-+.||-.++. ...+.+.+-+-.|++.. +|...... ..... ++..++. .=.++.. .
T Consensus 25 ~~~s~nG~~L~t--~~~d~Vi~idv~t~~~~-l~s~~~ed-----~d~it---a~~l~~d--~~~L~~a----------~ 81 (775)
T KOG0319|consen 25 VAWSSNGQHLYT--ACGDRVIIIDVATGSIA-LPSGSNED-----EDEIT---ALALTPD--EEVLVTA----------S 81 (775)
T ss_pred eeECCCCCEEEE--ecCceEEEEEccCCcee-cccCCccc-----hhhhh---eeeecCC--ccEEEEe----------e
Confidence 455677877776 35667777788888876 55444321 11122 2333332 2223332 1
Q ss_pred CcceEEEEEcCCC----cEEEeeeccccceeeeeecCceEEEcceEEeeecCCCEEEEEECCCceEEEe--eCCCCCCCC
Q 018593 170 GTFKCLVFDSESN----RWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKI--SLPDKVGSE 243 (353)
Q Consensus 170 ~~~~~~vy~s~~~----~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~--~~P~~~~~~ 243 (353)
.....++|+..++ +|+.. ... |........ .|.+--.++-...+.+.|...+.-..- -.|...
T Consensus 82 rs~llrv~~L~tgk~irswKa~---He~-Pvi~ma~~~----~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvV--- 150 (775)
T KOG0319|consen 82 RSQLLRVWSLPTGKLIRSWKAI---HEA-PVITMAFDP----TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVV--- 150 (775)
T ss_pred ccceEEEEEcccchHhHhHhhc---cCC-CeEEEEEcC----CCceEEeccccceEEEEEeeCCEEEEEecCCCceE---
Confidence 2557779998876 78876 222 222111111 112222222224677777776654433 223222
Q ss_pred CceeEEEECC---EEEEEEe-cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEe-CCcEEEEE
Q 018593 244 SRSYLLECDG---CLSVIEI-SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLAT-HKQVLVYH 318 (353)
Q Consensus 244 ~~~~l~~~~g---~L~~v~~-~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~yd 318 (353)
....+++ +..++.+ .+..+.+|.+++... .++.| ......+..+ .+..++..++-.+ +.-+.+||
T Consensus 151 ---ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl~~~--~~H~S~vtsL-~~~~d~~~~ls~~RDkvi~vwd 220 (775)
T KOG0319|consen 151 ---SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CLHTM--ILHKSAVTSL-AFSEDSLELLSVGRDKVIIVWD 220 (775)
T ss_pred ---EEEEeCCccchhheeecCCCceEEEEEcccCch----HHHHH--Hhhhhheeee-eeccCCceEEEeccCcEEEEee
Confidence 2222221 1222333 667888887754321 11111 1233334455 5555565344333 33388999
Q ss_pred CCCCeEE
Q 018593 319 RNGRLWK 325 (353)
Q Consensus 319 ~~~~~~~ 325 (353)
+.+-+-.
T Consensus 221 ~~~~~~l 227 (775)
T KOG0319|consen 221 LVQYKKL 227 (775)
T ss_pred hhhhhhh
Confidence 8664433
No 143
>PLN00181 protein SPA1-RELATED; Provisional
Probab=39.45 E-value=4.3e+02 Score=26.96 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=57.4
Q ss_pred ceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCC-CCeEEEEeeccc
Q 018593 209 GALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYR-DEWHSVDKVSLR 287 (353)
Q Consensus 209 g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~-~~W~~~~~i~~~ 287 (353)
|.....+.....|..||+.+..-....+..... .-..+...++...+.+..+..+.+|.+..... ..|..+..+.
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-- 705 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK--TVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM-- 705 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCCCC--CEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--
Confidence 555555554468999998765311111111110 11223334666655555778899998754221 3455544433
Q ss_pred cccCccceeeeeecCCcEEEEEe-CCcEEEEECCCCe
Q 018593 288 CIKGMVPSIFPISQTREYVFLAT-HKQVLVYHRNGRL 323 (353)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~yd~~~~~ 323 (353)
+.......+ ++..++.++..+. ++.+.+||..+..
T Consensus 706 gh~~~i~~v-~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 706 GHTNVKNFV-GLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred CCCCCeeEE-EEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 222222334 5555666555554 3458899987653
No 144
>PRK03629 tolB translocation protein TolB; Provisional
Probab=39.22 E-value=3.2e+02 Score=25.41 Aligned_cols=198 Identities=10% Similarity=0.145 Sum_probs=94.5
Q ss_pred CCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcE
Q 018593 105 EMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRW 184 (353)
Q Consensus 105 ~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W 184 (353)
....++++|..+++...|...+.. .. ...+.+ ++-+++... . .++...+.+++..++..
T Consensus 221 g~~~i~i~dl~~G~~~~l~~~~~~---------~~---~~~~SP--DG~~La~~~-----~--~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 221 GRSALVIQTLANGAVRQVASFPRH---------NG---APAFSP--DGSKLAFAL-----S--KTGSLNLYVMDLASGQI 279 (429)
T ss_pred CCcEEEEEECCCCCeEEccCCCCC---------cC---CeEECC--CCCEEEEEE-----c--CCCCcEEEEEECCCCCE
Confidence 345788889888877666543321 00 122333 222344331 0 22345677888888877
Q ss_pred EEeeeccccceeeeeecCceEEEcce-EEeeecCC--CEEEEEECCCceEEEeeCCCCCCCCCceeEEEECCE-EEEEEe
Q 018593 185 RKFVSVQDYYQFSIMNRNQVVFVNGA-LHWLTDSC--SFILALDLEGDVWRKISLPDKVGSESRSYLLECDGC-LSVIEI 260 (353)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~g~-ly~~~~~~--~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g~-L~~v~~ 260 (353)
+..+..... . ......-+|. |++..... ..|..+|+.+.....+....... .... ..-+|+ |.++..
T Consensus 280 ~~lt~~~~~-~-----~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~--~~~~-~SpDG~~Ia~~~~ 350 (429)
T PRK03629 280 RQVTDGRSN-N-----TEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN--QDAD-VSSDGKFMVMVSS 350 (429)
T ss_pred EEccCCCCC-c-----CceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc--cCEE-ECCCCCEEEEEEc
Confidence 665211100 0 0111122343 54544332 36777788877655553222110 1111 122454 444443
Q ss_pred cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc----EEEEECCCCeEEEeeeeccCccc
Q 018593 261 SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ----VLVYHRNGRLWKEMYSVKYGSTL 336 (353)
Q Consensus 261 ~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~yd~~~~~~~~v~~~~~~~~~ 336 (353)
.....+||.++- ++..+..+. ..... ..+ .+..+|..++...... +...++..+.-..+..-.+....
T Consensus 351 ~~g~~~I~~~dl-~~g~~~~Lt---~~~~~--~~p--~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~ 422 (429)
T PRK03629 351 NGGQQHIAKQDL-ATGGVQVLT---DTFLD--ETP--SIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKF 422 (429)
T ss_pred cCCCceEEEEEC-CCCCeEEeC---CCCCC--CCc--eECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCC
Confidence 444456666642 224444332 11111 112 3456776555544322 77889888777777544444455
Q ss_pred cceE
Q 018593 337 PLWF 340 (353)
Q Consensus 337 ~~~~ 340 (353)
|.|.
T Consensus 423 p~Ws 426 (429)
T PRK03629 423 PAWS 426 (429)
T ss_pred cccC
Confidence 6664
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=39.20 E-value=1.1e+02 Score=28.88 Aligned_cols=68 Identities=4% Similarity=0.054 Sum_probs=42.1
Q ss_pred CCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCeEEEeeeecc
Q 018593 262 DEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRLWKEMYSVKY 332 (353)
Q Consensus 262 ~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~~~v~~~~~ 332 (353)
...+.||.+.+.+.. .-+..++-...+.+.+.. -+..+|+.++++++.. +-++|+.+-+-+.=..++.
T Consensus 439 kgcVKVWdis~pg~k--~PvsqLdcl~rdnyiRSc-kL~pdgrtLivGGeastlsiWDLAapTprikaelts 507 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNK--SPVSQLDCLNRDNYIRSC-KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS 507 (705)
T ss_pred CCeEEEeeccCCCCC--CccccccccCcccceeee-EecCCCceEEeccccceeeeeeccCCCcchhhhcCC
Confidence 357778877654321 122222222344556666 6677888888887755 8899998877665555553
No 146
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=38.38 E-value=63 Score=18.06 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=19.1
Q ss_pred EEEEeC-CcEEEEECCCCeEEEeeeec
Q 018593 306 VFLATH-KQVLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 306 v~~~~~-~~~~~yd~~~~~~~~v~~~~ 331 (353)
+++.+. +.++.+|.+|++..+-.+..
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 555543 45999999999888776654
No 147
>PRK13684 Ycf48-like protein; Provisional
Probab=38.21 E-value=3e+02 Score=24.67 Aligned_cols=109 Identities=10% Similarity=0.014 Sum_probs=54.1
Q ss_pred EEeeecCCCEEEEE-ECCCceEEEeeCCCCCCCCCceeEEE-ECCEEEEEEecCCeEEEEEE-ecCCCCCeEEEEeeccc
Q 018593 211 LHWLTDSCSFILAL-DLEGDVWRKISLPDKVGSESRSYLLE-CDGCLSVIEISDEWMETWVL-KDYYRDEWHSVDKVSLR 287 (353)
Q Consensus 211 ly~~~~~~~~i~~~-D~~~~~~~~~~~P~~~~~~~~~~l~~-~~g~L~~v~~~~~~~~vw~l-~~~~~~~W~~~~~i~~~ 287 (353)
.++..+....+..- |-..++|+.++.+... .-..++. -+|+++++...+ .+ .+ ..++...|+.+. .+..
T Consensus 185 ~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~---~l~~i~~~~~g~~~~vg~~G-~~---~~~s~d~G~sW~~~~-~~~~ 256 (334)
T PRK13684 185 KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSR---RLQSMGFQPDGNLWMLARGG-QI---RFNDPDDLESWSKPI-IPEI 256 (334)
T ss_pred eEEEEeCCceEEEEcCCCCCeEEEeeCCCcc---cceeeeEcCCCCEEEEecCC-EE---EEccCCCCCcccccc-CCcc
Confidence 34444333244433 5566789988665443 2233333 357888776432 21 12 233448899752 2211
Q ss_pred cccCccceeeeeecCCcEEEEEeCCcEEEEECCCCeEEEee
Q 018593 288 CIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMY 328 (353)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~~~~~~v~ 328 (353)
........+ .+..++.+++....+.++.-....++|+.+.
T Consensus 257 ~~~~~l~~v-~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 257 TNGYGYLDL-AYRTPGEIWAGGGNGTLLVSKDGGKTWEKDP 296 (334)
T ss_pred ccccceeeE-EEcCCCCEEEEcCCCeEEEeCCCCCCCeECC
Confidence 000111122 3344566444444455666666678999874
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=37.84 E-value=1.2e+02 Score=28.62 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=40.5
Q ss_pred EEcceEEeeecCCCEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEec
Q 018593 206 FVNGALHWLTDSCSFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKD 272 (353)
Q Consensus 206 ~~~g~ly~~~~~~~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~ 272 (353)
.-||.--.+++....+-..|+.+.+-.+- .++..... +...-+.-+-+|++.+..+..+.||-|.+
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTprikaeltssapa-CyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA-CYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcchhhhcCCcchh-hhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 33555555555545777788887765544 44442211 23333344678888888888899998755
No 149
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=37.42 E-value=2.9e+02 Score=24.40 Aligned_cols=143 Identities=12% Similarity=0.190 Sum_probs=62.3
Q ss_pred EEEEcCC--CcEEEeeeccccceeeeeecCceEEEcceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEE-EE
Q 018593 175 LVFDSES--NRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLL-EC 251 (353)
Q Consensus 175 ~vy~s~~--~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~-~~ 251 (353)
.||-+.+ .+|+....- . .... ......-+|.+..++..+......|+....|.....+.... --.|+ ..
T Consensus 125 ~iy~T~DgG~tW~~~~~~--~--~gs~-~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~r---iq~~gf~~ 196 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVVSE--T--SGSI-NDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRR---IQSMGFSP 196 (302)
T ss_dssp -EEEESSTTSSEEEEE-S--------E-EEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS----EEEEEE-T
T ss_pred cEEEeCCCCCCeeEcccC--C--ccee-EeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccce---ehhceecC
Confidence 3776665 489887321 1 1111 01122345665556655566778899999999997775431 12233 24
Q ss_pred CCEEEEEEecCCeEEEEEEecCCC-CCeEEEEeeccccccCccceeeeeecCCcEEEEEeC-CcEEEEECCCCeEEEeee
Q 018593 252 DGCLSVIEISDEWMETWVLKDYYR-DEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH-KQVLVYHRNGRLWKEMYS 329 (353)
Q Consensus 252 ~g~L~~v~~~~~~~~vw~l~~~~~-~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~yd~~~~~~~~v~~ 329 (353)
+|.|.|+.. +..+.. -++.+. ..|.+. .++...-...+..+ ....+++ ++..+. +.+++=.-..++|++...
T Consensus 197 ~~~lw~~~~-Gg~~~~--s~~~~~~~~w~~~-~~~~~~~~~~~ld~-a~~~~~~-~wa~gg~G~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 197 DGNLWMLAR-GGQIQF--SDDPDDGETWSEP-IIPIKTNGYGILDL-AYRPPNE-IWAVGGSGTLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp TS-EEEEET-TTEEEE--EE-TTEEEEE----B-TTSS--S-EEEE-EESSSS--EEEEESTT-EEEESSTTSS-EE-GG
T ss_pred CCCEEEEeC-CcEEEE--ccCCCCccccccc-cCCcccCceeeEEE-EecCCCC-EEEEeCCccEEEeCCCCccceECcc
Confidence 588888763 333333 221222 778873 23332111111222 3334555 555544 446666667789999855
Q ss_pred ec
Q 018593 330 VK 331 (353)
Q Consensus 330 ~~ 331 (353)
..
T Consensus 271 ~~ 272 (302)
T PF14870_consen 271 GE 272 (302)
T ss_dssp GT
T ss_pred cc
Confidence 43
No 150
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=37.15 E-value=1.7e+02 Score=26.38 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=35.0
Q ss_pred CEEEEEEe-cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCeEEE
Q 018593 253 GCLSVIEI-SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRLWKE 326 (353)
Q Consensus 253 g~L~~v~~-~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~~~ 326 (353)
|.=+++.+ .+..+.||-+.- + .++.+++ +.-.-++.+ .+....-++|....+. +-+||++.|++.+
T Consensus 162 ~n~wf~tgs~DrtikIwDlat---g--~Lkltlt--Ghi~~vr~v-avS~rHpYlFs~gedk~VKCwDLe~nkvIR 229 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLAT---G--QLKLTLT--GHIETVRGV-AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR 229 (460)
T ss_pred CceeEEecCCCceeEEEEccc---C--eEEEeec--chhheeeee-eecccCceEEEecCCCeeEEEechhhhhHH
Confidence 33344444 567788886632 1 1333332 222233444 5555555555555444 7788888887654
No 151
>PLN02772 guanylate kinase
Probab=37.09 E-value=1.5e+02 Score=27.25 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=30.0
Q ss_pred cceEEEEEcCCCcEEEeeeccccceeeeeecCceEEE-cceEEeeecCC
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFV-NGALHWLTDSC 218 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~-~g~ly~~~~~~ 218 (353)
...+++||..++.|...+-... ++..+..+..+.+ ++.|+.+....
T Consensus 50 ~~~v~i~D~~t~~W~~P~V~G~--~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 50 SIGVQILDKITNNWVSPIVLGT--GPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred cceEEEEECCCCcEecccccCC--CCCCCCcceEEEECCceEEEEeCCC
Confidence 4578899999999988833222 2334444555545 67888887543
No 152
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.74 E-value=2.1e+02 Score=25.30 Aligned_cols=61 Identities=11% Similarity=0.288 Sum_probs=35.8
Q ss_pred cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCeEEEeee
Q 018593 261 SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRLWKEMYS 329 (353)
Q Consensus 261 ~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~~~v~~ 329 (353)
++..+.||.|...- +.+.+|.. +....-+ .+..++.++-+-.+++ +-+||+..++.-+++.
T Consensus 376 DDrTvKvWdLrNMR----splATIRt---dS~~NRv-avs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMR----SPLATIRT---DSPANRV-AVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred CCceEEEeeecccc----Ccceeeec---CCcccee-EeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 55667777664421 12333332 1112223 4555666566665555 9999999999988873
No 153
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=36.21 E-value=3.8e+02 Score=25.34 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=31.7
Q ss_pred CEEEEEECCCceEEEeeCCCCCCCCCceeEEEE-CCEEEEEEecCCeEEEEEEec
Q 018593 219 SFILALDLEGDVWRKISLPDKVGSESRSYLLEC-DGCLSVIEISDEWMETWVLKD 272 (353)
Q Consensus 219 ~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~-~g~L~~v~~~~~~~~vw~l~~ 272 (353)
..+..||..+..-..+.-+... -..+.+. +|+-.++. +.++++|+.+-
T Consensus 382 D~l~iyd~~~~e~kr~e~~lg~----I~av~vs~dGK~~vva--Ndr~el~vidi 430 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEKDLGN----IEAVKVSPDGKKVVVA--NDRFELWVIDI 430 (668)
T ss_pred ceEEEEecCCceEEEeeCCccc----eEEEEEcCCCcEEEEE--cCceEEEEEEe
Confidence 5899999999988877555543 1233333 46644443 57788888853
No 154
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=35.73 E-value=3.1e+02 Score=24.16 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=60.4
Q ss_pred cce-EEeeecCCCEEEEEECCCc-eEEE-----eeCCCCCCCCCceeEEEE-CCE-EEEEEecCCeEEEEEEecCCCCCe
Q 018593 208 NGA-LHWLTDSCSFILALDLEGD-VWRK-----ISLPDKVGSESRSYLLEC-DGC-LSVIEISDEWMETWVLKDYYRDEW 278 (353)
Q Consensus 208 ~g~-ly~~~~~~~~i~~~D~~~~-~~~~-----~~~P~~~~~~~~~~l~~~-~g~-L~~v~~~~~~~~vw~l~~~~~~~W 278 (353)
+|. +|........|..||+.+. .... +..|... ....+... +|+ |+++......+.+|.+++.. .+.
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~---~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~ 211 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA---GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH-GEI 211 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC---CCceEEECCCCCEEEEEecCCCEEEEEEEeCCC-CCE
Confidence 454 4444444368999999763 3321 1223222 12233333 354 45554467899999986422 344
Q ss_pred EEEEeecc-c-cc--cCccceeeeeecCCcEEEEEeC--CcEEEEEC--CCCeEEEeeee
Q 018593 279 HSVDKVSL-R-CI--KGMVPSIFPISQTREYVFLATH--KQVLVYHR--NGRLWKEMYSV 330 (353)
Q Consensus 279 ~~~~~i~~-~-~~--~~~~~~~~~~~~~~~~v~~~~~--~~~~~yd~--~~~~~~~v~~~ 330 (353)
..+..+.. + .. ......+ .+..+++.+++... +.+.+||. ++++++.+...
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i-~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADI-HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred EEEEEEecCCCcCCCCccceeE-EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence 44444432 1 11 1111224 56678887777643 34666766 44556555443
No 155
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=35.70 E-value=3.1e+02 Score=24.26 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=95.9
Q ss_pred cCeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcce
Q 018593 94 CNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFK 173 (353)
Q Consensus 94 ~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 173 (353)
..+-|+... -...+++-+||.+++....+.+... .. +...|. .=.++.. ...
T Consensus 35 ~~~~L~w~D-I~~~~i~r~~~~~g~~~~~~~p~~~---------~~---~~~~d~---~g~Lv~~------------~~g 86 (307)
T COG3386 35 DRGALLWVD-ILGGRIHRLDPETGKKRVFPSPGGF---------SS---GALIDA---GGRLIAC------------EHG 86 (307)
T ss_pred CCCEEEEEe-CCCCeEEEecCCcCceEEEECCCCc---------cc---ceeecC---CCeEEEE------------ccc
Confidence 344344443 4567888999999988887766533 00 222222 1233333 223
Q ss_pred EEEEEcCC-CcEEEeeeccccceeeeeecCceEEEcceEEeeecC-----C------CEEEEEECCCceEEEeeCCCCCC
Q 018593 174 CLVFDSES-NRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDS-----C------SFILALDLEGDVWRKISLPDKVG 241 (353)
Q Consensus 174 ~~vy~s~~-~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~-----~------~~i~~~D~~~~~~~~~~~P~~~~ 241 (353)
+..++.++ +.|.......+- -...+.....|.-+|.+|+-... . .++..+|+....-..+.-....
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~-~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~- 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDG-LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI- 164 (307)
T ss_pred cEEEeccCCceeEEeccccCC-CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe-
Confidence 33444332 334444222211 11123333356667777776655 1 4688888854433332110111
Q ss_pred CCCceeEEEE-CC-EEEEEEecCCeEEEEEEecC-CC--CCeEEEEeeccccccCccceeeeeecCCcEEEEEeCC--cE
Q 018593 242 SESRSYLLEC-DG-CLSVIEISDEWMETWVLKDY-YR--DEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHK--QV 314 (353)
Q Consensus 242 ~~~~~~l~~~-~g-~L~~v~~~~~~~~vw~l~~~-~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 314 (353)
..-|+-+ +| .||++......+.-+.++.. .. ++ ........ ..+....+ +++.+|.+......+ .+
T Consensus 165 ---~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~--~~G~PDG~-~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 165 ---PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDE--EPGLPDGM-AVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred ---cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEEccC--CCCCCCce-EEeCCCCEEEecccCCceE
Confidence 1222332 34 55555444455554444321 11 22 11222222 22334456 888899844344333 69
Q ss_pred EEEECCCCeEEEeeeec
Q 018593 315 LVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 315 ~~yd~~~~~~~~v~~~~ 331 (353)
.+|+++.++...+ .+.
T Consensus 238 ~~~~pdG~l~~~i-~lP 253 (307)
T COG3386 238 VRFNPDGKLLGEI-KLP 253 (307)
T ss_pred EEECCCCcEEEEE-ECC
Confidence 9999996665555 443
No 156
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=35.69 E-value=2.8e+02 Score=23.65 Aligned_cols=72 Identities=22% Similarity=0.091 Sum_probs=46.2
Q ss_pred cCceEEEcceEEeeecCCCEEEEEECCCce-EEEeeCCCCCCC---------CCceeEEEECCEEEEEEe---cCCeEEE
Q 018593 201 RNQVVFVNGALHWLTDSCSFILALDLEGDV-WRKISLPDKVGS---------ESRSYLLECDGCLSVIEI---SDEWMET 267 (353)
Q Consensus 201 ~~~~v~~~g~ly~~~~~~~~i~~~D~~~~~-~~~~~~P~~~~~---------~~~~~l~~~~g~L~~v~~---~~~~~~v 267 (353)
...-|+.+|.+|+-......|+.||+.++. -....+|..... ....-+++-+.-|.++-. ....+.|
T Consensus 70 gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~ 149 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVL 149 (249)
T ss_pred ccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEe
Confidence 344789999999998776799999999954 222244443211 134566776667777765 3445555
Q ss_pred EEEec
Q 018593 268 WVLKD 272 (353)
Q Consensus 268 w~l~~ 272 (353)
-+|+.
T Consensus 150 skLdp 154 (249)
T KOG3545|consen 150 SKLDP 154 (249)
T ss_pred eccCH
Confidence 66644
No 157
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=35.60 E-value=2.8e+02 Score=23.76 Aligned_cols=69 Identities=12% Similarity=0.019 Sum_probs=39.5
Q ss_pred eEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEE--ECCEEEEEEecCCeEEEEEEecCCC-CCeEEE
Q 018593 210 ALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLE--CDGCLSVIEISDEWMETWVLKDYYR-DEWHSV 281 (353)
Q Consensus 210 ~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~--~~g~L~~v~~~~~~~~vw~l~~~~~-~~W~~~ 281 (353)
-+|..++++..+..||..++.=...---... .....+. -+|.+|..+.++..+.+|++.-... +.|.-.
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~---gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~~~~ 308 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHF---GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGLWKCV 308 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCC---CceEEEEECCCCceeeccCCCceEEEEEecCCCchhhcccc
Confidence 4555555556788888887542211000111 1122233 2588888777889999999966544 456543
No 158
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=34.45 E-value=3.7e+02 Score=24.71 Aligned_cols=104 Identities=9% Similarity=0.017 Sum_probs=50.3
Q ss_pred CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECCEEEEEEe----cCCeEEEEEEecCCCCCeEEEEeeccc--cccC
Q 018593 219 SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDGCLSVIEI----SDEWMETWVLKDYYRDEWHSVDKVSLR--CIKG 291 (353)
Q Consensus 219 ~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~----~~~~~~vw~l~~~~~~~W~~~~~i~~~--~~~~ 291 (353)
..|+..|+.+++...+ .-.... .+....-.+..|.+.+. +.-.-.||.++..+...|....+++.. +.+.
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wl---gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEf 244 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWL---GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEF 244 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-E---EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEE
T ss_pred ceEEEEECCCCceeEEEecCccc---cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccc
Confidence 6899999999998877 433333 22333334556666655 222346899987766666655444321 2221
Q ss_pred ccceeeeeecCCcEEEEE-eCCc----EEEEECCCCeEEEeeeec
Q 018593 292 MVPSIFPISQTREYVFLA-THKQ----VLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 292 ~~~~~~~~~~~~~~v~~~-~~~~----~~~yd~~~~~~~~v~~~~ 331 (353)
+...+..+.+.. ..+. +..||++|.+-+.+..++
T Consensus 245 ------w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p 283 (386)
T PF14583_consen 245 ------WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP 283 (386)
T ss_dssp ------E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-
T ss_pred ------ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC
Confidence 233333333322 2222 999999998777665554
No 159
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=34.39 E-value=2.9e+02 Score=23.49 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=45.9
Q ss_pred ECCEEEEEEecCCeEEEEEEecCCCCCe-EEEEeeccccccCccceeeeeecCCcEEEEEeCCcEEEEECCCCeEEEeee
Q 018593 251 CDGCLSVIEISDEWMETWVLKDYYRDEW-HSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYS 329 (353)
Q Consensus 251 ~~g~L~~v~~~~~~~~vw~l~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~~~~~~v~~ 329 (353)
.+|...++......+.|+...+.. ..+ .....+.++... ..+ .+. ++.++++..+....+|+.++..+.+..
T Consensus 102 ~~~~~~L~va~kk~i~i~~~~~~~-~~f~~~~ke~~lp~~~---~~i-~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~ 174 (275)
T PF00780_consen 102 HEGSRRLCVAVKKKILIYEWNDPR-NSFSKLLKEISLPDPP---SSI-AFL--GNKICVGTSKGFYLIDLNTGSPSELLD 174 (275)
T ss_pred cccceEEEEEECCEEEEEEEECCc-ccccceeEEEEcCCCc---EEE-EEe--CCEEEEEeCCceEEEecCCCCceEEeC
Confidence 345555555545588888886632 344 455555543221 122 222 444888888889999999998888875
Q ss_pred ecc
Q 018593 330 VKY 332 (353)
Q Consensus 330 ~~~ 332 (353)
...
T Consensus 175 ~~~ 177 (275)
T PF00780_consen 175 PSD 177 (275)
T ss_pred ccC
Confidence 543
No 160
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=34.12 E-value=64 Score=24.08 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=20.4
Q ss_pred cEEEEEeCCcEEEEECCCCeEEEeeeecc
Q 018593 304 EYVFLATHKQVLVYHRNGRLWKEMYSVKY 332 (353)
Q Consensus 304 ~~v~~~~~~~~~~yd~~~~~~~~v~~~~~ 332 (353)
.++....+-.++.||.++++|++.. ++|
T Consensus 21 ~Il~~a~~v~vY~f~~~~~~W~K~~-iEG 48 (122)
T PF06058_consen 21 SILDTASHVVVYKFDHETNEWEKTD-IEG 48 (122)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEE-EEE
T ss_pred HHHhhCCeEEEEeecCCCCcEeecC-cEe
Confidence 3445555566899999999999984 443
No 161
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=33.72 E-value=3.7e+02 Score=24.42 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=67.7
Q ss_pred EEEcceEEeeecCCCEEEEEECCCc------eEEEeeC---CCCCCC-CCceeEEEE--CCEEEEEEe-------cCCeE
Q 018593 205 VFVNGALHWLTDSCSFILALDLEGD------VWRKISL---PDKVGS-ESRSYLLEC--DGCLSVIEI-------SDEWM 265 (353)
Q Consensus 205 v~~~g~ly~~~~~~~~i~~~D~~~~------~~~~~~~---P~~~~~-~~~~~l~~~--~g~L~~v~~-------~~~~~ 265 (353)
...+|+.+|++.++ .+...|+... .|+.+.. +..... +.+. +... +++||+... ....-
T Consensus 202 ~~~dg~~~~vs~eG-~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 202 SNKSGRLVWPTYTG-KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred EcCCCcEEEEecCC-eEEEEecCCCcceecceeeeccccccccccCCCccee-EEEcCCCCEEEEEecCCccccccCCCC
Confidence 34479999999985 9999996543 3554421 111111 1222 3333 356776442 11224
Q ss_pred EEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCc-EEEEEe--CCcEEEEECCCCeEEEe
Q 018593 266 ETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTRE-YVFLAT--HKQVLVYHRNGRLWKEM 327 (353)
Q Consensus 266 ~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~-~v~~~~--~~~~~~yd~~~~~~~~v 327 (353)
+||+++- ..+..+.+++... ....+ .+..+++ .++... .+.+.++|..+++..+-
T Consensus 280 ~V~ViD~---~t~kvi~~i~vG~---~~~~i-avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 280 FLFVVDA---KTGKRLRKIELGH---EIDSI-NVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EEEEEEC---CCCeEEEEEeCCC---ceeeE-EECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 7888754 6788888888732 12245 6777888 666554 24499999999855443
No 162
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=33.64 E-value=4.1e+02 Score=24.98 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=58.2
Q ss_pred cceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEE-EECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeecc
Q 018593 208 NGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLL-ECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSL 286 (353)
Q Consensus 208 ~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~-~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~ 286 (353)
+|....-+..+..|-.+|.....-....+..+.. .-..+. .-.|++.+.+..+..+.||.++. + + .+..+.
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~--~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~--~--~~~~l~- 285 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST--YVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-G--E--CVRKLK- 285 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCC--ceEEEEecCCCCEEEEecCCCcEEEEeccC-C--e--EEEeee-
Confidence 4543333333368888888444222222222221 112222 23466666666889999997744 1 1 122222
Q ss_pred ccccCccceeeeeecCCcEEEEEeC-CcEEEEECCCCeEE
Q 018593 287 RCIKGMVPSIFPISQTREYVFLATH-KQVLVYHRNGRLWK 325 (353)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~yd~~~~~~~ 325 (353)
.....+..+ .+..++..+....+ +.+.+||++++...
T Consensus 286 -~hs~~is~~-~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 286 -GHSDGISGL-AFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred -ccCCceEEE-EECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 222233445 66778886666553 34999999999843
No 163
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=33.58 E-value=3.8e+02 Score=24.51 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=69.6
Q ss_pred cceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcc-eEEeeecCC--CEEEEEECCCceEEEeeCCCCCCCCCcee
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNG-ALHWLTDSC--SFILALDLEGDVWRKISLPDKVGSESRSY 247 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g-~ly~~~~~~--~~i~~~D~~~~~~~~~~~P~~~~~~~~~~ 247 (353)
...+.+++..++.-+........ ... ....-+| .+++..... ..|..+|+.++....+....... ....
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~-~~~-----~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~--~~~~ 284 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGM-NGA-----PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGID--TEPS 284 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCC-ccc-----eEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCC--CCEE
Confidence 45778889888766555221111 111 1122234 355443322 36888999888766552211110 1111
Q ss_pred EEEECCE-EEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCC----cEEEEECCCC
Q 018593 248 LLECDGC-LSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHK----QVLVYHRNGR 322 (353)
Q Consensus 248 l~~~~g~-L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~yd~~~~ 322 (353)
.. -+|+ |.++.......+||.++-. +.++..+ .... . ..... .+..+|+.+++.... .++.+|++++
T Consensus 285 ~s-~dg~~l~~~s~~~g~~~iy~~d~~-~~~~~~l---~~~~-~-~~~~~-~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 285 WS-PDGKSIAFTSDRGGSPQIYMMDAD-GGEVRRL---TFRG-G-YNASP-SWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred EC-CCCCEEEEEECCCCCceEEEEECC-CCCEEEe---ecCC-C-CccCe-EECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 11 2454 4444333444577777533 2444332 2111 1 11122 344566655554432 4999999998
Q ss_pred eEEEee
Q 018593 323 LWKEMY 328 (353)
Q Consensus 323 ~~~~v~ 328 (353)
.++.+.
T Consensus 357 ~~~~l~ 362 (417)
T TIGR02800 357 GERVLT 362 (417)
T ss_pred CeEEcc
Confidence 877664
No 164
>PTZ00334 trans-sialidase; Provisional
Probab=33.46 E-value=2e+02 Score=29.17 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=47.1
Q ss_pred eEEE-cceEEeeecC----C--CEEEEEECCCceEEEe-eCC-CCCCCCCceeEEEEC-CEEEEEEe-cCCeEEEEEEec
Q 018593 204 VVFV-NGALHWLTDS----C--SFILALDLEGDVWRKI-SLP-DKVGSESRSYLLECD-GCLSVIEI-SDEWMETWVLKD 272 (353)
Q Consensus 204 ~v~~-~g~ly~~~~~----~--~~i~~~D~~~~~~~~~-~~P-~~~~~~~~~~l~~~~-g~L~~v~~-~~~~~~vw~l~~ 272 (353)
+|.+ ||+|-+-... . .+++.|-.+++.|..- -+| ..+ ..+.++|.+ |+|.|+.. ++..-.|+.-.|
T Consensus 265 GI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~gC---~~P~I~EWe~gkLlM~t~C~dG~RrVYES~D 341 (780)
T PTZ00334 265 GVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSADGC---SDPSVVEWKEGKLMMMTACDDGRRRVYESGD 341 (780)
T ss_pred eEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCCCC---CCCEEEEEcCCeEEEEEEeCCCCEEEEEECC
Confidence 4554 5666554221 1 4678887777788654 233 334 678999996 99999877 445556775545
Q ss_pred CCCCCeEEE
Q 018593 273 YYRDEWHSV 281 (353)
Q Consensus 273 ~~~~~W~~~ 281 (353)
.+ ..|++.
T Consensus 342 mG-~tWtEA 349 (780)
T PTZ00334 342 KG-DSWTEA 349 (780)
T ss_pred CC-CChhhC
Confidence 44 678863
No 165
>PRK04043 tolB translocation protein TolB; Provisional
Probab=33.27 E-value=4e+02 Score=24.77 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=54.5
Q ss_pred CEEEEEECCCceEEEe-eCCCCCCCCCceeEEEECC-EEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCcccee
Q 018593 219 SFILALDLEGDVWRKI-SLPDKVGSESRSYLLECDG-CLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSI 296 (353)
Q Consensus 219 ~~i~~~D~~~~~~~~~-~~P~~~~~~~~~~l~~~~g-~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~ 296 (353)
..|..+|+.+++-+.+ ..+... .... ..-+| +|.+.......-+||.++-.+ ..+..+..-+ ... ..+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~---~~~~-~SPDG~~la~~~~~~g~~~Iy~~dl~~-g~~~~LT~~~--~~d--~~p- 282 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML---VVSD-VSKDGSKLLLTMAPKGQPDIYLYDTNT-KTLTQITNYP--GID--VNG- 282 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE---EeeE-ECCCCCEEEEEEccCCCcEEEEEECCC-CcEEEcccCC--Ccc--Ccc-
Confidence 4789999998877766 332221 1111 12245 555554444567888885433 4555542222 111 112
Q ss_pred eeeecCCcEEEEEeCC----cEEEEECCCCeEEEee
Q 018593 297 FPISQTREYVFLATHK----QVLVYHRNGRLWKEMY 328 (353)
Q Consensus 297 ~~~~~~~~~v~~~~~~----~~~~yd~~~~~~~~v~ 328 (353)
....+|+-+++.... .++.+|+++++.+.+.
T Consensus 283 -~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 283 -NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred -EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 234455545554432 4999999999997774
No 166
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.24 E-value=1e+02 Score=30.55 Aligned_cols=62 Identities=13% Similarity=0.302 Sum_probs=43.3
Q ss_pred cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCeEEEeeeec
Q 018593 261 SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRLWKEMYSVK 331 (353)
Q Consensus 261 ~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~~~v~~~~ 331 (353)
-+..+.||.+.+...-.|..+. ..+..+ |...+|+..++++... ...|+.+..+...-..+.
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~--------~lITAv-cy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLR--------DLITAV-CYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred cccceEEeecCcCeeEeehhhh--------hhheeE-EeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 4567788888776545566643 334566 7777888788887655 788999988877655443
No 167
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=32.62 E-value=56 Score=24.83 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.5
Q ss_pred ecCCcEEEEEeCCcEEEEECCCCe
Q 018593 300 SQTREYVFLATHKQVLVYHRNGRL 323 (353)
Q Consensus 300 ~~~~~~v~~~~~~~~~~yd~~~~~ 323 (353)
..+.+++++++...+..||.+.|.
T Consensus 61 ~~~~D~LliGt~t~llaYDV~~N~ 84 (136)
T PF14781_consen 61 DDGRDCLLIGTQTSLLAYDVENNS 84 (136)
T ss_pred CCCcCEEEEeccceEEEEEcccCc
Confidence 346788999999999999999885
No 168
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=32.11 E-value=6.6e+02 Score=26.87 Aligned_cols=226 Identities=12% Similarity=-0.013 Sum_probs=106.9
Q ss_pred EeeecCeeEEeeecCCCceEEEEcccccceeeccCCCCCCC-cc-ccCCCceeEEEEEeecCCCceEEEEEeeecccCCC
Q 018593 90 VRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPV-TR-FYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHR 167 (353)
Q Consensus 90 ~~~s~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~-~~-~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 167 (353)
.++..+|.+++.. ...+++.++++..+....+........ .. ..........|+.+|+..+ .+++.
T Consensus 574 avd~~~g~lyVaD-s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn--~LYVa--------- 641 (1057)
T PLN02919 574 AIDLLNNRLFISD-SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN--LLYVA--------- 641 (1057)
T ss_pred EEECCCCeEEEEE-CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC--EEEEE---------
Confidence 4555678888775 566789999986554444443111100 00 0000000011566655322 23332
Q ss_pred CCCcceEEEEEcCCCcEEEeeeccc----cc----ee-eeeecCceEEE---cceEEeeecCCCEEEEEECCCceEEEee
Q 018593 168 PDGTFKCLVFDSESNRWRKFVSVQD----YY----QF-SIMNRNQVVFV---NGALHWLTDSCSFILALDLEGDVWRKIS 235 (353)
Q Consensus 168 ~~~~~~~~vy~s~~~~W~~~~~~~~----~~----~~-~~~~~~~~v~~---~g~ly~~~~~~~~i~~~D~~~~~~~~~~ 235 (353)
+.....+.+++..++.=+....... .. .. ........+.+ +|.+|+.......|..||..+.....+.
T Consensus 642 Dt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 642 DTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred eCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence 2224567777766654322211000 00 00 00011113333 5788887665568999999887665442
Q ss_pred CCC----C-------CCCCCceeEEEE-CC-EEEEEEecCCeEEEEEEecCCCCCeEEE---------Eeecc-ccc---
Q 018593 236 LPD----K-------VGSESRSYLLEC-DG-CLSVIEISDEWMETWVLKDYYRDEWHSV---------DKVSL-RCI--- 289 (353)
Q Consensus 236 ~P~----~-------~~~~~~~~l~~~-~g-~L~~v~~~~~~~~vw~l~~~~~~~W~~~---------~~i~~-~~~--- 289 (353)
-.. . ........+... +| .|+++......+.+|.++..+ ..+.-- ...+. .+.
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~-~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG-SRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc-EEEEEecccccCcccccccCCCCchhh
Confidence 110 0 000011223333 34 588877777788888654321 111110 00000 000
Q ss_pred --cCccceeeeeecCCcEEEEEeC-CcEEEEECCCCeEEEeee
Q 018593 290 --KGMVPSIFPISQTREYVFLATH-KQVLVYHRNGRLWKEMYS 329 (353)
Q Consensus 290 --~~~~~~~~~~~~~~~~v~~~~~-~~~~~yd~~~~~~~~v~~ 329 (353)
......+ .+..+|.+++.... +++..||+++++...+..
T Consensus 801 ~~l~~P~Gv-avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 801 VLLQHPLGV-LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred hhccCCcee-eEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence 0112234 56677884443433 349999999998887654
No 169
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=32.03 E-value=45 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHhcCCchhhhhhhccc
Q 018593 1 MGFFPDEVIQQILARLPVKSLFRTKTVC 28 (353)
Q Consensus 1 ~~~LP~dll~~IL~rLp~~~l~r~r~Vc 28 (353)
++.+|-+++.-||.++.+..|.+.-.-|
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 4689999999999999999999887765
No 170
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=31.41 E-value=4.8e+02 Score=25.09 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=54.8
Q ss_pred ecCCCEEEEEECCCceEEEeeC-CCCCCCCCceeEEEECCEEEEEEe--cCCeEEEEEEecCCC-CCeEEEEeecccccc
Q 018593 215 TDSCSFILALDLEGDVWRKISL-PDKVGSESRSYLLECDGCLSVIEI--SDEWMETWVLKDYYR-DEWHSVDKVSLRCIK 290 (353)
Q Consensus 215 ~~~~~~i~~~D~~~~~~~~~~~-P~~~~~~~~~~l~~~~g~L~~v~~--~~~~~~vw~l~~~~~-~~W~~~~~i~~~~~~ 290 (353)
+.....++.|+...++.+..-- -... ........+.++.++.. ....++.|..++... ..|... .
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~---~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~--------~ 144 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHY---GNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ--------K 144 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCC---CcceeeecccccCceEecCCceeEEEEecccceeeeeeccC--------C
Confidence 3333588888888876544311 1111 11222223444444433 345667776655322 333332 1
Q ss_pred CccceeeeeecCCcEEEEEeCCcEEEEECCCCeEEEe
Q 018593 291 GMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEM 327 (353)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~~~~~~v 327 (353)
..+..+ ++..+|. +++..++.+.+||.++++.-.-
T Consensus 145 ~~~~sl-~is~D~~-~l~~as~~ik~~~~~~kevv~~ 179 (541)
T KOG4547|consen 145 PLVSSL-CISPDGK-ILLTASRQIKVLDIETKEVVIT 179 (541)
T ss_pred CccceE-EEcCCCC-EEEeccceEEEEEccCceEEEE
Confidence 123445 7777887 5566668899999999876644
No 171
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=31.00 E-value=4.7e+02 Score=24.86 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=36.6
Q ss_pred eEEEcceEEeeecCCCEEEEEECCCce--EEEeeCCCCCCCCCceeEEEECCEEEEEEe
Q 018593 204 VVFVNGALHWLTDSCSFILALDLEGDV--WRKISLPDKVGSESRSYLLECDGCLSVIEI 260 (353)
Q Consensus 204 ~v~~~g~ly~~~~~~~~i~~~D~~~~~--~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~ 260 (353)
.+..+|.+|.-...+ .+.+||..+++ |+ .++|.... ..+.+.+.+|++|++..
T Consensus 402 ~~~~g~~v~~g~~dG-~l~ald~~tG~~lW~-~~~~~~~~--a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 402 LATAGNLVFAGAADG-YFRAFDATTGKELWK-FRTPSGIQ--ATPMTYEVNGKQYVGVM 456 (488)
T ss_pred eEecCCeEEEECCCC-eEEEEECCCCceeeE-EECCCCce--EcCEEEEeCCEEEEEEE
Confidence 456777888776654 99999998865 55 36665442 23334467899999876
No 172
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=30.92 E-value=2.4e+02 Score=30.04 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=39.1
Q ss_pred cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCeEEEee
Q 018593 261 SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRLWKEMY 328 (353)
Q Consensus 261 ~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~~~v~ 328 (353)
....+..|-.-- ....|.+..... .+.+..+ +++..+..+++++.+. +.+||++=+.-..=+
T Consensus 1171 ~~~~iv~~D~r~-~~~~w~lk~~~~----hG~vTSi-~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRM-RHDAWRLKNQLR----HGLVTSI-VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred eccceEEecchh-hhhHHhhhcCcc----ccceeEE-EecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 556677773211 115677765443 3445566 8888888888887654 999999876544333
No 173
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=30.88 E-value=5.1e+02 Score=25.20 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=0.0
Q ss_pred EEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEEEC-CEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccc
Q 018593 211 LHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECD-GCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCI 289 (353)
Q Consensus 211 ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~-g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~ 289 (353)
||..+... .+..||++.++|- -|..........+.... ..|..++..+..++.|-.-... ..=++-........
T Consensus 148 ly~~gsg~-evYRlNLEqGrfL---~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~~~~~v~s~ 222 (703)
T KOG2321|consen 148 LYLVGSGS-EVYRLNLEQGRFL---NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-RVGTLDAASSVNSH 222 (703)
T ss_pred EEEeecCc-ceEEEEccccccc---cccccccccceeeeecCccceEEecccCceEEEecchhhh-hheeeecccccCCC
Q ss_pred cCc-----cceeeeeecCCcEEEEEeCCc-EEEEECCCCe
Q 018593 290 KGM-----VPSIFPISQTREYVFLATHKQ-VLVYHRNGRL 323 (353)
Q Consensus 290 ~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~ 323 (353)
.+. +..+ .+..+|--+-+++... ++.||+++.+
T Consensus 223 pg~~~~~svTal-~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 223 PGGDAAPSVTAL-KFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred ccccccCcceEE-EecCCceeEEeeccCCcEEEEEcccCC
No 174
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=30.86 E-value=83 Score=23.21 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=20.4
Q ss_pred CcEEEEEeCCcEEEEECCCCeEEEee
Q 018593 303 REYVFLATHKQVLVYHRNGRLWKEMY 328 (353)
Q Consensus 303 ~~~v~~~~~~~~~~yd~~~~~~~~v~ 328 (353)
.-++++...+.++.||++++..-.+.
T Consensus 82 ~~vvl~~~~G~Vy~yd~~~~~l~~lA 107 (125)
T PF02393_consen 82 RLVVLVGESGRVYAYDPEDDRLYRLA 107 (125)
T ss_pred eEEEEEeCCCeEEEEEcCCCEEEEEe
Confidence 44466677788999999998887775
No 175
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=30.52 E-value=3.9e+02 Score=23.73 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=70.1
Q ss_pred cceEEeeecCCCEEEEEECCCceE-EEe-eCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEe-e
Q 018593 208 NGALHWLTDSCSFILALDLEGDVW-RKI-SLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDK-V 284 (353)
Q Consensus 208 ~g~ly~~~~~~~~i~~~D~~~~~~-~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~-i 284 (353)
.|.+|..+..+..|-.+|-.+++. ..+ ..-...+ ........+|+-.+-.+.+..+.+|.+.- +.=.+.+. -
T Consensus 272 t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse--vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t---~R~l~~YtGA 346 (430)
T KOG0640|consen 272 TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE--VCSAVFTKNGKYILSSGKDSTVKLWEIST---GRMLKEYTGA 346 (430)
T ss_pred CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce--eeeEEEccCCeEEeecCCcceeeeeeecC---CceEEEEecC
Confidence 488999888766787777665542 222 1111110 11222345677666666778888996633 22222211 1
Q ss_pred ccccccCccceeeeeecCCcEEEEEeC--CcEEEEECCCCeEEEeeeeccCccccceEEEeeeeeeeeec
Q 018593 285 SLRCIKGMVPSIFPISQTREYVFLATH--KQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSC 352 (353)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~yd~~~~~~~~v~~~~~~~~~~~~~~~~~~~~sl~~~ 352 (353)
+..+....-.-. .+.+..+++++-.. +.++.+|-+|..=..+..+... +.+.|+...+-.+-++.|
T Consensus 347 g~tgrq~~rtqA-vFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn-~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 347 GTTGRQKHRTQA-VFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHN-GAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred Ccccchhhhhhh-hhcCccceEEccccccCceeeccccchhhhhhcccCCC-CCceEEEeCCCCCceeee
Confidence 111111000111 23445554444332 4499999999765555555433 344566555555555555
No 176
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.95 E-value=44 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=16.4
Q ss_pred eEEEcceEEeeecCC----CEEEEEECCC
Q 018593 204 VVFVNGALHWLTDSC----SFILALDLEG 228 (353)
Q Consensus 204 ~v~~~g~ly~~~~~~----~~i~~~D~~~ 228 (353)
-+.-+|+|||+.... -.|+.|+..+
T Consensus 43 Ell~GGSlYWVikg~i~~RQ~Il~i~~~~ 71 (137)
T PF07370_consen 43 ELLDGGSLYWVIKGQIQCRQRILDIEEVT 71 (137)
T ss_pred HhccCCcEEEEECCEEEEeeeeeeeeEec
Confidence 556689999998764 3455555443
No 177
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=28.17 E-value=3.7e+02 Score=22.79 Aligned_cols=124 Identities=15% Similarity=0.237 Sum_probs=65.2
Q ss_pred ceEE-EEEcCCC-cEEEeeeccccceeeeeecCceE--EEcceEEeeecC---CCEEEEEECC-CceEEEe---eCCCCC
Q 018593 172 FKCL-VFDSESN-RWRKFVSVQDYYQFSIMNRNQVV--FVNGALHWLTDS---CSFILALDLE-GDVWRKI---SLPDKV 240 (353)
Q Consensus 172 ~~~~-vy~s~~~-~W~~~~~~~~~~~~~~~~~~~~v--~~~g~ly~~~~~---~~~i~~~D~~-~~~~~~~---~~P~~~ 240 (353)
.... +|+...+ +|+...... .........+ .-+|.+|.+... .....+.-.+ .++|+.. .+|...
T Consensus 133 ~~~~~~~S~D~G~tW~~~~~~~----~~~~~~e~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~ 208 (275)
T PF13088_consen 133 FSAFVYYSDDGGKTWSSGSPIP----DGQGECEPSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPN 208 (275)
T ss_dssp EEEEEEEESSTTSSEEEEEECE----CSEEEEEEEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCC
T ss_pred cceEEEEeCCCCceeecccccc----ccCCcceeEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCccc
Confidence 3444 4555544 698883321 1111112222 246788887765 1234444444 3578865 455543
Q ss_pred CCCCceeEEE-ECCEEEEEEe---cCCeEEEEEEecCCCCCeEEEEeecccc-ccCccceeeeeecCCc
Q 018593 241 GSESRSYLLE-CDGCLSVIEI---SDEWMETWVLKDYYRDEWHSVDKVSLRC-IKGMVPSIFPISQTRE 304 (353)
Q Consensus 241 ~~~~~~~l~~-~~g~L~~v~~---~~~~~~vw~l~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~~~~~ 304 (353)
....++. .+|+++++.. ....+.++.-++ +...|.....|.... ....+..+ ....+|.
T Consensus 209 ---~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D-~g~tW~~~~~i~~~~~~~~~Y~~~-~~~~dg~ 272 (275)
T PF13088_consen 209 ---SSISLVRLSDGRLLLVYNNPDGRSNLSLYVSED-GGKTWSRPKTIDDGPNGDSGYPSL-TQLPDGK 272 (275)
T ss_dssp ---EEEEEEECTTSEEEEEEECSSTSEEEEEEEECT-TCEEEEEEEEEEEEE-CCEEEEEE-EEEETTE
T ss_pred ---CCceEEEcCCCCEEEEEECCCCCCceEEEEEeC-CCCcCCccEEEeCCCCCcEECCee-EEeCCCc
Confidence 3445555 3589998887 245666765433 448999988887622 22223333 4455565
No 178
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=28.13 E-value=6.6e+02 Score=25.64 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=70.9
Q ss_pred ceEEeeecCCCEEEEEECCCceEEEe--eCCCCCCCCCceeEEEEC--CEEEEEEecCCeEEEEEEecCCC-CCeEEEEe
Q 018593 209 GALHWLTDSCSFILALDLEGDVWRKI--SLPDKVGSESRSYLLECD--GCLSVIEISDEWMETWVLKDYYR-DEWHSVDK 283 (353)
Q Consensus 209 g~ly~~~~~~~~i~~~D~~~~~~~~~--~~P~~~~~~~~~~l~~~~--g~L~~v~~~~~~~~vw~l~~~~~-~~W~~~~~ 283 (353)
|.+-+++.+...|-.||+.++.-..- +-|..- ....-+.++ +++.+.++.+..+..|.++...- ..|.+-..
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~---~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~ 536 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK---GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS 536 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeecccccCcccc---CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC
Confidence 66777777667899999998754332 234333 222333344 46666666677888887755321 34443333
Q ss_pred eccc---------------------------------cccCccceeeeeecCCcEEEEEeC-CcEEEEECCCCeEEEeee
Q 018593 284 VSLR---------------------------------CIKGMVPSIFPISQTREYVFLATH-KQVLVYHRNGRLWKEMYS 329 (353)
Q Consensus 284 i~~~---------------------------------~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~yd~~~~~~~~v~~ 329 (353)
+... ++......+ .+..+|+.++.... +.+..||+-|....-...
T Consensus 537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~-~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM-TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee-EeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 2220 122233345 77888988877665 559999999888776655
Q ss_pred ec
Q 018593 330 VK 331 (353)
Q Consensus 330 ~~ 331 (353)
+.
T Consensus 616 vd 617 (910)
T KOG1539|consen 616 VD 617 (910)
T ss_pred cC
Confidence 44
No 179
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=26.38 E-value=4.3e+02 Score=22.95 Aligned_cols=150 Identities=13% Similarity=0.192 Sum_probs=77.2
Q ss_pred cceEEEEEcC-CCcEEEeeeccccceeeeeecCceEEE--cceEEeeecCC-CEEEEEECCCceEEEee-CCCCCCCCCc
Q 018593 171 TFKCLVFDSE-SNRWRKFVSVQDYYQFSIMNRNQVVFV--NGALHWLTDSC-SFILALDLEGDVWRKIS-LPDKVGSESR 245 (353)
Q Consensus 171 ~~~~~vy~s~-~~~W~~~~~~~~~~~~~~~~~~~~v~~--~g~ly~~~~~~-~~i~~~D~~~~~~~~~~-~P~~~~~~~~ 245 (353)
...+.|++.. .++|...+...+.+....+ +|.. .|. |..+.+. .....+--....|+.+. +-.+- ..
T Consensus 36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVR----svAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~~lEGHE---nE 107 (312)
T KOG0645|consen 36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVR----SVAWSPHGR-YLASASFDATVVIWKKEDGEFECVATLEGHE---NE 107 (312)
T ss_pred CceEEEEecCCCCcEEEEEeccccchheee----eeeecCCCc-EEEEeeccceEEEeecCCCceeEEeeeeccc---cc
Confidence 5677888877 6789877333222111111 3333 344 2222221 34555555566777763 32222 23
Q ss_pred eeEEE-E-CCEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCCc-EEEEECC-C
Q 018593 246 SYLLE-C-DGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRN-G 321 (353)
Q Consensus 246 ~~l~~-~-~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~-~ 321 (353)
...+. + +|.+..-+..+..+=||..++. ++-.-...+...-.+ +..+ .-....++++...+.. +..|.-+ .
T Consensus 108 VK~Vaws~sG~~LATCSRDKSVWiWe~ded--dEfec~aVL~~HtqD--VK~V-~WHPt~dlL~S~SYDnTIk~~~~~~d 182 (312)
T KOG0645|consen 108 VKCVAWSASGNYLATCSRDKSVWIWEIDED--DEFECIAVLQEHTQD--VKHV-IWHPTEDLLFSCSYDNTIKVYRDEDD 182 (312)
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEEecCC--CcEEEEeeecccccc--ccEE-EEcCCcceeEEeccCCeEEEEeecCC
Confidence 33333 2 3554444446666667766543 344444444431111 1112 1222446577777655 7788777 8
Q ss_pred CeEEEeeeeccC
Q 018593 322 RLWKEMYSVKYG 333 (353)
Q Consensus 322 ~~~~~v~~~~~~ 333 (353)
+.|+-+..+.+.
T Consensus 183 ddW~c~~tl~g~ 194 (312)
T KOG0645|consen 183 DDWECVQTLDGH 194 (312)
T ss_pred CCeeEEEEecCc
Confidence 999999888764
No 180
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=26.32 E-value=2.7e+02 Score=20.59 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=41.6
Q ss_pred cceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC------CEEEEE-ECCCceEEEe--eCCCC
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC------SFILAL-DLEGDVWRKI--SLPDK 239 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~------~~i~~~-D~~~~~~~~~--~~P~~ 239 (353)
...+-.||.++.+|+.+..+ .. +........-+..+|+|-.+.... ..|-++ |..+++|+.. .+|..
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P-~~-~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~~lp~~ 94 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLP-ED-PYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHIVLPPS 94 (129)
T ss_pred CcEEEEEEcCCceEEEEEee-ee-eccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEEECChH
Confidence 56777899999999988443 11 222333344677788888775543 122223 6667899877 45554
No 181
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=25.71 E-value=1.7e+02 Score=27.59 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=38.1
Q ss_pred ecCCeEEEEEEecCCC-CCeEEEEeeccccccCccceeeeeecCCcEEEE--EeCCcEEEEECCCCeEEE
Q 018593 260 ISDEWMETWVLKDYYR-DEWHSVDKVSLRCIKGMVPSIFPISQTREYVFL--ATHKQVLVYHRNGRLWKE 326 (353)
Q Consensus 260 ~~~~~~~vw~l~~~~~-~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~yd~~~~~~~~ 326 (353)
.+...+.+|-.+.... ..|.+.|.-|-. .+ |+......+++ +.+.++..||.+.++-..
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~-------gi-cfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCR-------GI-CFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcC-------cc-eecCCccceEEEecccceEEEeecccccccc
Confidence 3788999997765544 789998877743 33 44433333443 334569999998776543
No 182
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=24.51 E-value=4.9e+02 Score=22.90 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=59.5
Q ss_pred EEEEEECCCc-----eEEEe---eCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccC
Q 018593 220 FILALDLEGD-----VWRKI---SLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKG 291 (353)
Q Consensus 220 ~i~~~D~~~~-----~~~~~---~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~ 291 (353)
.++.|+..+. ++..+ +.+. .-..+...+|+|.+.. +..+.++.+++.+ .+.....+..+-
T Consensus 63 ri~v~~i~~~~~~~~~l~~i~~~~~~g-----~V~ai~~~~~~lv~~~--g~~l~v~~l~~~~--~l~~~~~~~~~~--- 130 (321)
T PF03178_consen 63 RILVFEISESPENNFKLKLIHSTEVKG-----PVTAICSFNGRLVVAV--GNKLYVYDLDNSK--TLLKKAFYDSPF--- 130 (321)
T ss_dssp EEEEEEECSS-----EEEEEEEEEESS------EEEEEEETTEEEEEE--TTEEEEEEEETTS--SEEEEEEE-BSS---
T ss_pred EEEEEEEEcccccceEEEEEEEEeecC-----cceEhhhhCCEEEEee--cCEEEEEEccCcc--cchhhheecceE---
Confidence 4555665553 45544 3333 2356777899855443 6889999997742 477776665422
Q ss_pred ccceeeeeecCCcEEEEEeC-Cc--EEEEECCCCeEEEeeeeccCccccceEEEeeee
Q 018593 292 MVPSIFPISQTREYVFLATH-KQ--VLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFR 346 (353)
Q Consensus 292 ~~~~~~~~~~~~~~v~~~~~-~~--~~~yd~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 346 (353)
... .+...++.++++.- +. ++.||.+.+++..+..- ..+.|.-+..+.
T Consensus 131 --~i~-sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d----~~~~~v~~~~~l 181 (321)
T PF03178_consen 131 --YIT-SLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARD----YQPRWVTAAEFL 181 (321)
T ss_dssp --SEE-EEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEE----SS-BEEEEEEEE
T ss_pred --EEE-EEeccccEEEEEEcccCEEEEEEEccCCEEEEEEec----CCCccEEEEEEe
Confidence 111 22222444555543 44 66778888888888642 235565544443
No 183
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=23.64 E-value=5.3e+02 Score=22.97 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=46.4
Q ss_pred eEEEc-ceEEeeecCC-------CEEEEEECCCceEEEeeCCCC-CCCCCceeEEEE-CCEEEEEEec--CCeEEEEEEe
Q 018593 204 VVFVN-GALHWLTDSC-------SFILALDLEGDVWRKISLPDK-VGSESRSYLLEC-DGCLSVIEIS--DEWMETWVLK 271 (353)
Q Consensus 204 ~v~~~-g~ly~~~~~~-------~~i~~~D~~~~~~~~~~~P~~-~~~~~~~~l~~~-~g~L~~v~~~--~~~~~vw~l~ 271 (353)
++..+ |.+.+..... ..++.-|-..++|+....+.. ... ....+++. +|+|.++... .....+..-.
T Consensus 151 gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~-~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~ 229 (351)
T cd00260 151 GIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGC-SECSVVELSDGKLYMYTRDNSGGRRPVYESR 229 (351)
T ss_pred eEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCC-cCCEEEEecCCEEEEEEeeCCCCcEEEEEEc
Confidence 55554 7776554321 234444444578986644332 111 46788888 8999998773 3444444443
Q ss_pred cCCCCCeEEEEeec
Q 018593 272 DYYRDEWHSVDKVS 285 (353)
Q Consensus 272 ~~~~~~W~~~~~i~ 285 (353)
| +...|+......
T Consensus 230 D-~G~tWs~~~~~~ 242 (351)
T cd00260 230 D-MGTTWTEALGTL 242 (351)
T ss_pred C-CCcCcccCcCCc
Confidence 3 348899875543
No 184
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=23.54 E-value=4.5e+02 Score=22.13 Aligned_cols=135 Identities=13% Similarity=0.027 Sum_probs=64.2
Q ss_pred cceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcce-EEeeecCCCEEEEEECCCceE-EEeeCCCCCCCCCceeE
Q 018593 171 TFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGA-LHWLTDSCSFILALDLEGDVW-RKISLPDKVGSESRSYL 248 (353)
Q Consensus 171 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~-ly~~~~~~~~i~~~D~~~~~~-~~~~~P~~~~~~~~~~l 248 (353)
...+.+|+.++++....- +.. .... .-.+.-+|. +|........+..+|+.+.+- ..++.+... ..+
T Consensus 52 ~~~v~~~d~~~~~~~~~~--~~~--~~~~--~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-----~~~ 120 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTL--PSG--PDPE--LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEP-----EGM 120 (300)
T ss_pred CCeEEEEECCCCcEEEec--cCC--CCcc--EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCc-----ceE
Confidence 346778998887654320 110 0000 001222344 444433335899999987542 222222111 122
Q ss_pred EE-ECCEEEEEEec-CCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEe--CCcEEEEECCCCeE
Q 018593 249 LE-CDGCLSVIEIS-DEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLAT--HKQVLVYHRNGRLW 324 (353)
Q Consensus 249 ~~-~~g~L~~v~~~-~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~yd~~~~~~ 324 (353)
.. -+|++.++... ...+.+|..+ .......+.... ....+ .+..++..+++.. .+.+..||+++++.
T Consensus 121 ~~~~dg~~l~~~~~~~~~~~~~d~~-----~~~~~~~~~~~~---~~~~~-~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 121 AVSPDGKIVVNTSETTNMAHFIDTK-----TYEIVDNVLVDQ---RPRFA-EFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EECCCCCEEEEEecCCCeEEEEeCC-----CCeEEEEEEcCC---CccEE-EECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 22 35666666553 3334444321 122322232211 11223 5566777666654 45599999998765
Q ss_pred E
Q 018593 325 K 325 (353)
Q Consensus 325 ~ 325 (353)
.
T Consensus 192 ~ 192 (300)
T TIGR03866 192 I 192 (300)
T ss_pred e
Confidence 3
No 185
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=22.98 E-value=1.5e+02 Score=16.36 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=15.4
Q ss_pred EcceEEeeecCCCEEEEEECCC
Q 018593 207 VNGALHWLTDSCSFILALDLEG 228 (353)
Q Consensus 207 ~~g~ly~~~~~~~~i~~~D~~~ 228 (353)
.++.+||.......|.++++..
T Consensus 19 ~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 19 IEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred cCCEEEEEeCCCCEEEEEeCCC
Confidence 3578999877666777777654
No 186
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=22.60 E-value=2.2e+02 Score=18.32 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=13.3
Q ss_pred EEEEECCCCeEEEee
Q 018593 314 VLVYHRNGRLWKEMY 328 (353)
Q Consensus 314 ~~~yd~~~~~~~~v~ 328 (353)
++.||++||+.+-+.
T Consensus 43 Ifkyd~~tNei~L~K 57 (63)
T PF14157_consen 43 IFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEeCCCCCeEEEEE
Confidence 999999999988763
No 187
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=22.56 E-value=9.1e+02 Score=25.36 Aligned_cols=106 Identities=14% Similarity=0.251 Sum_probs=57.3
Q ss_pred CEEEEEECCC-ceEEEe-eCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeeccc-cccCccce
Q 018593 219 SFILALDLEG-DVWRKI-SLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLR-CIKGMVPS 295 (353)
Q Consensus 219 ~~i~~~D~~~-~~~~~~-~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~-~~~~~~~~ 295 (353)
..|+.|-+.. +..+.+ .+-... .-..|++++|+|...- +..+.++. |++...+... ........
T Consensus 807 GRIivfe~~e~~~L~~v~e~~v~G---av~aL~~fngkllA~I--n~~vrLye--------~t~~~eLr~e~~~~~~~~a 873 (1096)
T KOG1897|consen 807 GRIIVFEFEELNSLELVAETVVKG---AVYALVEFNGKLLAGI--NQSVRLYE--------WTTERELRIECNISNPIIA 873 (1096)
T ss_pred ceEEEEEEecCCceeeeeeeeecc---ceeehhhhCCeEEEec--CcEEEEEE--------ccccceehhhhcccCCeEE
Confidence 5677777776 555544 221111 3456778888886543 45566653 4444444432 22222222
Q ss_pred eeeeecCCcEEEEEeCCc---EEEEECCCCeEEEeeeeccCccccceEEE
Q 018593 296 IFPISQTREYVFLATHKQ---VLVYHRNGRLWKEMYSVKYGSTLPLWFSA 342 (353)
Q Consensus 296 ~~~~~~~~~~v~~~~~~~---~~~yd~~~~~~~~v~~~~~~~~~~~~~~~ 342 (353)
+ .+--.|+.+.++.--+ ++.|+...+.++++++ .-.|.|.-+
T Consensus 874 L-~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr----D~~p~Wmta 918 (1096)
T KOG1897|consen 874 L-DLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR----DYNPNWMTA 918 (1096)
T ss_pred E-EEEecCcEEEEeeccceEEEEEEeccCCceEEeeh----hhCccceee
Confidence 3 2223444355554332 8889999998998864 344566543
No 188
>PTZ00421 coronin; Provisional
Probab=22.41 E-value=6.9e+02 Score=23.90 Aligned_cols=113 Identities=9% Similarity=0.080 Sum_probs=55.8
Q ss_pred cceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEE-EC-CEEEEEEe---cCCeEEEEEEecCCCCCeEEEE
Q 018593 208 NGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLE-CD-GCLSVIEI---SDEWMETWVLKDYYRDEWHSVD 282 (353)
Q Consensus 208 ~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~-~~-g~L~~v~~---~~~~~~vw~l~~~~~~~W~~~~ 282 (353)
+|.+...+..+..|-.+|+.+.+-.. .+...... ....... .+ +.|..++. .+..+.+|.+.... ... .
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~-tl~~H~~~-~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-~p~---~ 252 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVS-SVEAHASA-KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-SPY---S 252 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEE-EEecCCCC-cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-Cce---e
Confidence 46555555544689999998865321 22211110 1112222 23 34433332 35789999764322 111 1
Q ss_pred eeccccccCccceeeeeecCCcEEEEEe--CCcEEEEECCCCeEEEee
Q 018593 283 KVSLRCIKGMVPSIFPISQTREYVFLAT--HKQVLVYHRNGRLWKEMY 328 (353)
Q Consensus 283 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~yd~~~~~~~~v~ 328 (353)
...... .. ...+.....++..+++.+ ++.+.+||+++++.....
T Consensus 253 ~~~~d~-~~-~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 253 TVDLDQ-SS-ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EeccCC-CC-ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 111111 01 111113455777677765 445999999998876553
No 189
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=21.94 E-value=3.3e+02 Score=20.17 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=29.1
Q ss_pred CEEEEEECCCceEEEeeCCCCCCCCCceeEEEECCEEEEE
Q 018593 219 SFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVI 258 (353)
Q Consensus 219 ~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v 258 (353)
.++.-||-..-+|+.-++|........-..++.+|++|-.
T Consensus 100 RYViDFD~RGvkwTMRdipVfy~~~~~~l~Veid~r~YtL 139 (144)
T PF10657_consen 100 RYVIDFDKRGVKWTMRDIPVFYNSLTRQLCVEIDRRTYTL 139 (144)
T ss_pred eEEEeccCCcceeEeecCceEEccCCcEEEEEECCeEEeh
Confidence 5788888888999999999765442334556778887743
No 190
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=21.80 E-value=5.7e+02 Score=22.73 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=63.9
Q ss_pred cceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEE--ECCEEEEEEecCCeEEEEEEecCCCCCeEEEEeec
Q 018593 208 NGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLE--CDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVS 285 (353)
Q Consensus 208 ~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~--~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~ 285 (353)
.|-+-.++...-.+-.||..|-+...-.-|..... ....-+. ..|+||+-...+..+.+| |.-.+. =+.++.
T Consensus 227 sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht-~ai~~V~Ys~t~~lYvTaSkDG~Iklw---DGVS~r--Cv~t~~ 300 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT-GAITQVRYSSTGSLYVTASKDGAIKLW---DGVSNR--CVRTIG 300 (430)
T ss_pred CCceEEEecCCCceeEEeccceeEeeecCcccccc-cceeEEEecCCccEEEEeccCCcEEee---ccccHH--HHHHHH
Confidence 35444454443578889999877654444655422 2222333 348999988888889999 421111 011222
Q ss_pred cccccCccceeeeeecCCcEEEEEeCCc-EEEEECCCCeEEEee
Q 018593 286 LRCIKGMVPSIFPISQTREYVFLATHKQ-VLVYHRNGRLWKEMY 328 (353)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~~~v~ 328 (353)
...-...++.. .+.++|++++..+... +.++.+.|++..+..
T Consensus 301 ~AH~gsevcSa-~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 301 NAHGGSEVCSA-VFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred hhcCCceeeeE-EEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 21112223334 5678888544444333 888888888776654
No 191
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=21.53 E-value=7.7e+02 Score=24.08 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=37.8
Q ss_pred EEEcCCCcEEEeeeccccceeeeeecCc--eEEEcceEEeeecCCCEEEEEECCCceEEEeeCCCCC
Q 018593 176 VFDSESNRWRKFVSVQDYYQFSIMNRNQ--VVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKV 240 (353)
Q Consensus 176 vy~s~~~~W~~~~~~~~~~~~~~~~~~~--~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~ 240 (353)
+-.+....|+.+...+++.......... .|.-||++++-. +|-.+++..+.|..++.|...
T Consensus 212 ~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~----GVsRqNp~GdsWkdI~tP~~a 274 (705)
T KOG3669|consen 212 VDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYRE----GVSRQNPEGDSWKDIVTPRQA 274 (705)
T ss_pred CCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEe----cccccCCCCchhhhccCcccc
Confidence 3344556899985444331111122111 566688777653 688999999999988777654
No 192
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=21.26 E-value=3.8e+02 Score=24.53 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=37.5
Q ss_pred cceEEEE--EcCCCcEEEeeeccccceeeeeec--------CceEEEcceEEeeecCCCEEEEEECCCceEEEe
Q 018593 171 TFKCLVF--DSESNRWRKFVSVQDYYQFSIMNR--------NQVVFVNGALHWLTDSCSFILALDLEGDVWRKI 234 (353)
Q Consensus 171 ~~~~~vy--~s~~~~W~~~~~~~~~~~~~~~~~--------~~~v~~~g~ly~~~~~~~~i~~~D~~~~~~~~~ 234 (353)
...++|| |.+.++|.++.+..+. ....... ...-.-+++||+.... ..-+||++.++-+.+
T Consensus 283 t~~f~VfklD~~~~~WveV~sLgd~-aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~--~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 283 TVGFKVYKFDDELAKWMEVKTLGDN-AFVMATDTCFSVLAHEFYGCLPNSIYFTEDT--MPKVFKLDNGNGSSI 353 (373)
T ss_pred eeEEEEEEEcCCCCcEEEecccCCe-EEEEECCccEEEecCCCCCccCCEEEEECCC--cceEEECCCCCccce
Confidence 3567777 5567899999555432 1111111 1122346889999764 577999999885554
No 193
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.15 E-value=7.2e+02 Score=23.62 Aligned_cols=156 Identities=11% Similarity=0.041 Sum_probs=73.7
Q ss_pred eEEEEEcCCC--cEEEeeeccccceeeeeecCceEEEc-ceEEeeecCCCEEEEEECCCce--EEEeeCCCC-CCCCCce
Q 018593 173 KCLVFDSESN--RWRKFVSVQDYYQFSIMNRNQVVFVN-GALHWLTDSCSFILALDLEGDV--WRKISLPDK-VGSESRS 246 (353)
Q Consensus 173 ~~~vy~s~~~--~W~~~~~~~~~~~~~~~~~~~~v~~~-g~ly~~~~~~~~i~~~D~~~~~--~~~~~~P~~-~~~~~~~ 246 (353)
.+..+|..++ .|+...................++.+ +.+|.-...+ .+.++|..+++ |+.-.-+.. .......
T Consensus 72 ~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g-~v~AlD~~TG~~~W~~~~~~~~~~~~~i~s 150 (488)
T cd00216 72 ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDG-RLVALDAETGKQVWKFGNNDQVPPGYTMTG 150 (488)
T ss_pred cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCC-eEEEEECCCCCEeeeecCCCCcCcceEecC
Confidence 4555666654 58765211100000001112234456 8898876664 99999998754 654322221 0000011
Q ss_pred eEEEECCEEEEEEecC------CeEEEEEEecC-CCCCeEEEEeeccc-ccc--------------CccceeeeeecCCc
Q 018593 247 YLLECDGCLSVIEISD------EWMETWVLKDY-YRDEWHSVDKVSLR-CIK--------------GMVPSIFPISQTRE 304 (353)
Q Consensus 247 ~l~~~~g~L~~v~~~~------~~~~vw~l~~~-~~~~W~~~~~i~~~-~~~--------------~~~~~~~~~~~~~~ 304 (353)
..+..+|.+++..... ..-.++.++.. ++..|.....-+.. ... ...... .++..++
T Consensus 151 sP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~p-a~d~~~g 229 (488)
T cd00216 151 APTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASP-TYDPKTN 229 (488)
T ss_pred CCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCe-eEeCCCC
Confidence 2233456655433211 12346666543 33677664321111 000 000111 2333344
Q ss_pred EEEEEeCC-------------------cEEEEECCCCeEEEeeee
Q 018593 305 YVFLATHK-------------------QVLVYHRNGRLWKEMYSV 330 (353)
Q Consensus 305 ~v~~~~~~-------------------~~~~yd~~~~~~~~v~~~ 330 (353)
.|++.+.+ .++.+|.+|++..+-...
T Consensus 230 ~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 230 LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence 47776532 599999999988776543
No 194
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=2e+02 Score=26.12 Aligned_cols=54 Identities=11% Similarity=0.178 Sum_probs=35.4
Q ss_pred eeecCCcEEEEEeC-CcEEEEECCCCeEEEeeeeccCccccceEEEeeeeeeeeec
Q 018593 298 PISQTREYVFLATH-KQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSC 352 (353)
Q Consensus 298 ~~~~~~~~v~~~~~-~~~~~yd~~~~~~~~v~~~~~~~~~~~~~~~~~~~~sl~~~ 352 (353)
+....+..|+.+.. +.+..||+++++.... .+++..+-....+.|.=.+-|.||
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~-~~kg~tGsirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC-GLKGITGSIRSIHCHPTHPVLASC 308 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeecc-ccCCccCCcceEEEcCCCceEEee
Confidence 55667776776654 4599999999998876 344443444555555555556665
No 195
>PRK10115 protease 2; Provisional
Probab=20.96 E-value=8.6e+02 Score=24.45 Aligned_cols=116 Identities=8% Similarity=-0.030 Sum_probs=62.8
Q ss_pred EEcceEEeeecCC---CEEEEEECC-CceEEEeeCCCCCCCCCceeEEEECCEEEEEEecCCeEEEEEEecCCCCCeEEE
Q 018593 206 FVNGALHWLTDSC---SFILALDLE-GDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSV 281 (353)
Q Consensus 206 ~~~g~ly~~~~~~---~~i~~~D~~-~~~~~~~~~P~~~~~~~~~~l~~~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~ 281 (353)
..++.+|.....+ ..++..|+. .+.|+.+-.+.... .--.+...++.|.+....+..-.++.++..+ .. +
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~-~~---~ 350 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENI--MLEGFTLFTDWLVVEERQRGLTSLRQINRKT-RE---V 350 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCC--EEEEEEEECCEEEEEEEeCCEEEEEEEcCCC-Cc---e
Confidence 3356777776543 578888887 57888775442210 1122334577787777766677787774322 22 2
Q ss_pred EeeccccccCccceeeeee--cCCcEEEEEeC-----CcEEEEECCCCeEEEeee
Q 018593 282 DKVSLRCIKGMVPSIFPIS--QTREYVFLATH-----KQVLVYHRNGRLWKEMYS 329 (353)
Q Consensus 282 ~~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~-----~~~~~yd~~~~~~~~v~~ 329 (353)
..++++.... ...+ ... .++..+++... ..++.||+++++++.+..
T Consensus 351 ~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 351 IGIAFDDPAY-VTWI-AYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred EEecCCCCce-Eeee-cccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 3333211110 1111 111 22332444322 349999999998887754
No 196
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=20.77 E-value=6.8e+02 Score=23.18 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=54.8
Q ss_pred cceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCceeEEE-ECCEEEEEEecCCeEEEEEEecCCCCCeE--EEEee
Q 018593 208 NGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLE-CDGCLSVIEISDEWMETWVLKDYYRDEWH--SVDKV 284 (353)
Q Consensus 208 ~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~-~~g~L~~v~~~~~~~~vw~l~~~~~~~W~--~~~~i 284 (353)
+|.++.++..+.....-|.....|..++.|.... ...+.. .+|.++++...+. +..-.+.+ ..|. ....+
T Consensus 249 dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~---l~~v~~~~dg~l~l~g~~G~---l~~S~d~G-~~~~~~~f~~~ 321 (398)
T PLN00033 249 DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARR---IQNMGWRADGGLWLLTRGGG---LYVSKGTG-LTEEDFDFEEA 321 (398)
T ss_pred CCCEEEEECCccEEEecCCCCcceEEecCCCccc---eeeeeEcCCCCEEEEeCCce---EEEecCCC-Ccccccceeec
Confidence 3444444444323334444455589887776542 222322 4588888765322 22222322 4443 11222
Q ss_pred ccccccCccceeeeeecCCcEEEEEeCCcEEEEECCCCeEEEee
Q 018593 285 SLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMY 328 (353)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~yd~~~~~~~~v~ 328 (353)
+..........+ ....++.+++....+.++.-....++|+++.
T Consensus 322 ~~~~~~~~l~~v-~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 322 DIKSRGFGILDV-GYRSKKEAWAAGGSGILLRSTDGGKSWKRDK 364 (398)
T ss_pred ccCCCCcceEEE-EEcCCCcEEEEECCCcEEEeCCCCcceeEcc
Confidence 221011111222 3344566444455555777777888999874
No 197
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=20.73 E-value=2e+02 Score=19.27 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=20.6
Q ss_pred cCCcEEEEEeCCc---EEEEECCCCeEEEee
Q 018593 301 QTREYVFLATHKQ---VLVYHRNGRLWKEMY 328 (353)
Q Consensus 301 ~~~~~v~~~~~~~---~~~yd~~~~~~~~v~ 328 (353)
+.|+++++..-.. =..||+||++..+|.
T Consensus 15 ~SG~Yy~vd~P~Qp~~k~lfDPETGqYVeV~ 45 (75)
T PF15232_consen 15 ESGQYYVVDAPVQPKTKTLFDPETGQYVEVL 45 (75)
T ss_pred CCCCEEEEecCCCcceeeeecCCCCcEEEEe
Confidence 4677666655433 668999999999984
No 198
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.32 E-value=2.8e+02 Score=28.51 Aligned_cols=62 Identities=13% Similarity=0.290 Sum_probs=38.1
Q ss_pred cCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeCC-cEEEEECCCCeEEEee
Q 018593 261 SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHK-QVLVYHRNGRLWKEMY 328 (353)
Q Consensus 261 ~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~yd~~~~~~~~v~ 328 (353)
++..+.+|.|++. ..|...-- .++.+.+..+ -+....++++..+.. .+-+||+..++=....
T Consensus 226 DDRqVKlWrmnet--KaWEvDtc---rgH~nnVssv-lfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 226 DDRQVKLWRMNET--KAWEVDTC---RGHYNNVSSV-LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred CcceeeEEEeccc--cceeehhh---hcccCCcceE-EecCccceeEecCCCccEEEEecccccceeee
Confidence 7889999999876 57876321 2333333333 344455645555444 3889999887655554
No 199
>PTZ00421 coronin; Provisional
Probab=20.02 E-value=7.8e+02 Score=23.56 Aligned_cols=63 Identities=10% Similarity=0.191 Sum_probs=35.2
Q ss_pred EEEEEEecCCeEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC-CcEEEEECCCCeE
Q 018593 254 CLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH-KQVLVYHRNGRLW 324 (353)
Q Consensus 254 ~L~~v~~~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~yd~~~~~~ 324 (353)
.+.+.+..+..+.||.++. . ..+..+. .....+..+ .+..+|.+++.... +.+.+||+++++.
T Consensus 139 ~iLaSgs~DgtVrIWDl~t---g--~~~~~l~--~h~~~V~sl-a~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVER---G--KAVEVIK--CHSDQITSL-EWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CEEEEEeCCCEEEEEECCC---C--eEEEEEc--CCCCceEEE-EEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 4544445678899997643 1 1223332 122222334 44557775555543 4489999998764
No 200
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=20.01 E-value=6.2e+02 Score=22.40 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=47.9
Q ss_pred CCEEEEEECCCceEEEeeCCCCCCCCCceeEEEE-CCEEEEEEe-cCCeEEEEEEecCCCCCeEEEEeeccccccCccce
Q 018593 218 CSFILALDLEGDVWRKISLPDKVGSESRSYLLEC-DGCLSVIEI-SDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPS 295 (353)
Q Consensus 218 ~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~l~~~-~g~L~~v~~-~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~ 295 (353)
+..+..||+.+..=..+-.-. ...+.++. -+.=+++.+ -+..+.+|-.-.. ..+... +....+
T Consensus 74 dg~vr~~Dln~~~~~~igth~-----~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-----~~~~~~-----d~~kkV 138 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHD-----EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-----VVVGTF-----DQGKKV 138 (323)
T ss_pred CceEEEEEecCCcceeeccCC-----CceEEEEeeccCCeEEEcccCccEEEEecccc-----cccccc-----ccCceE
Confidence 358999999887655441111 12233332 222233344 6778888844210 000011 111123
Q ss_pred eeeeecCCcEEEEEeCCc-EEEEECCCCeE
Q 018593 296 IFPISQTREYVFLATHKQ-VLVYHRNGRLW 324 (353)
Q Consensus 296 ~~~~~~~~~~v~~~~~~~-~~~yd~~~~~~ 324 (353)
. +.+-.|+.+++++.++ +..||+++..-
T Consensus 139 y-~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 139 Y-CMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred E-EEeccCCEEEEeecCceEEEEEcccccc
Confidence 3 6666777788866554 99999998643
No 201
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=20.01 E-value=7.4e+02 Score=23.29 Aligned_cols=111 Identities=17% Similarity=0.124 Sum_probs=61.9
Q ss_pred EcceEEeeecCCCEEEEEECCCceEEEeeCCCCCCCCCcee-EEE-ECCEEEEEEecCCeEEEEEEecCCCCCeEEE--E
Q 018593 207 VNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSY-LLE-CDGCLSVIEISDEWMETWVLKDYYRDEWHSV--D 282 (353)
Q Consensus 207 ~~g~ly~~~~~~~~i~~~D~~~~~~~~~~~P~~~~~~~~~~-l~~-~~g~L~~v~~~~~~~~vw~l~~~~~~~W~~~--~ 282 (353)
-+|.+..-+..+..+...|+.+.+.... ++... .... +.. -+|.+.+....+..+.||.+. .|.+. .
T Consensus 256 p~g~~i~Sgs~D~tvriWd~~~~~~~~~-l~~hs---~~is~~~f~~d~~~l~s~s~d~~i~vwd~~-----~~~~~~~~ 326 (456)
T KOG0266|consen 256 PDGNLLVSGSDDGTVRIWDVRTGECVRK-LKGHS---DGISGLAFSPDGNLLVSASYDGTIRVWDLE-----TGSKLCLK 326 (456)
T ss_pred CCCCEEEEecCCCcEEEEeccCCeEEEe-eeccC---CceEEEEECCCCCEEEEcCCCccEEEEECC-----CCceeeee
Confidence 3455666555556888899988443322 22222 1122 222 346666666668899999552 34432 2
Q ss_pred eecc-ccccCccceeeeeecCCcEEEEEeCC-cEEEEECCCCeEEEee
Q 018593 283 KVSL-RCIKGMVPSIFPISQTREYVFLATHK-QVLVYHRNGRLWKEMY 328 (353)
Q Consensus 283 ~i~~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~yd~~~~~~~~v~ 328 (353)
.+.. .... ....+ .+..+++.++....+ .+..||+...+.....
T Consensus 327 ~~~~~~~~~-~~~~~-~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 327 LLSGAENSA-PVTSV-QFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred cccCCCCCC-ceeEE-EECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 2221 1111 23334 667888877776666 4889999876555443
Done!