BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018594
         (353 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V1N|A Chain A, Solution Structure Of The Region 51-160 Of Human Kin17
           Reveals A Winged Helix Fold
          Length = 111

 Score =  120 bits (301), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/102 (52%), Positives = 73/102 (71%)

Query: 6   QNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEF 65
           +NP + ++ +SEEF   FLEL+RR     R+   +VYNEYI  R H+HMN+T+W TLT+F
Sbjct: 10  ENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDF 69

Query: 66  VKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIK 107
            K+LGR G CKV+ETPKGW+I YIDRD ET+ ++    K+ K
Sbjct: 70  TKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKK 111


>pdb|2CKK|A Chain A, High Resolution Crystal Structure Of The Human Kin17 C-
           Terminal Domain Containing A Kow Motif Kin17
          Length = 127

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 237 DYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVI 296
           DYWL   IIVK+++K L +K Y+K+K +V++VIDKY   ++M++    L++DQ  LETVI
Sbjct: 12  DYWLQPEIIVKIITKKLGEK-YHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVI 70

Query: 297 PQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA 353
           P  G  + ++NG YRG+   L  ++   F A + IE G   GR +  I YEDI KLA
Sbjct: 71  PAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 127


>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
          Length = 313

 Score = 28.1 bits (61), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 73  GKCKVEETPKGWFITYIDRDSETLFKEKMKNK 104
           G   VE TPK   +TYI+   ++LFK K+  +
Sbjct: 272 GFAYVEITPKEMSVTYIEASGKSLFKTKLPRR 303


>pdb|3UPU|A Chain A, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
 pdb|3UPU|B Chain B, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
 pdb|3UPU|C Chain C, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
          Length = 459

 Score = 28.1 bits (61), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 252 ALADKGYNKQKGVVRKVI-----DKYVGEIEMLEKK--HVLRVDQDELETVIPQIGGLVR 304
           A  +K  +K   ++RK I     D  VGEI + ++      ++D   +  +I   G LVR
Sbjct: 259 AFTNKSVDKLNSIIRKKIFETDKDFIVGEIIVXQEPLFKTYKIDGKPVSEIIFNNGQLVR 318

Query: 305 IVNGAYRGSNARLLGV 320
           I+   Y  +  +  GV
Sbjct: 319 IIEAEYTSTFVKARGV 334


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,650,581
Number of Sequences: 62578
Number of extensions: 308424
Number of successful extensions: 737
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 12
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)