BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018594
(353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K339|KIN17_MOUSE DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1
Length = 391
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 204/358 (56%), Gaps = 25/358 (6%)
Query: 1 MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWA 60
+ + +NP + ++ +SEEF FLEL+RR R+ +VYNEYI R H+HMN+T+W
Sbjct: 54 LLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWE 113
Query: 61 TLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVDEERQEREI 120
TLT+F K+LGR G CKV+ETPKGW+I YIDRD ET+ ++ K+ K D+ DEE+ + I
Sbjct: 114 TLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFI 173
Query: 121 QKQIEIAASSSVSSTNPLS-----NSEDNTTRELNLEAAAAVGKVGFALGSSYKDNVTSN 175
++Q+ T + N E+ T LN A + G T++
Sbjct: 174 EEQVRRGLEGKEQETPVFTELSRENEEEKVTFNLNKGAGGSAG-------------ATTS 220
Query: 176 GSGNNGSSSTRLVFEELDKDNNNNNNNNRKIDKNGSKVSGNSALEELMREEEKVKEKMNR 235
S + G S+ +L+ ++ ++ + K SAL+E+M EE+ K++ R
Sbjct: 221 KSSSLGPSALKLLGSAASGKRKESSQSSAQPAKK-----KKSALDEIMELEEE-KKRTAR 274
Query: 236 KDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETV 295
D WL GI+VK+++K L +K Y+K+KGVV++VID+Y ++M + L++DQ LETV
Sbjct: 275 TDAWLQPGIVVKIITKKLGEK-YHKKKGVVKEVIDRYTAVVKMTDSGDRLKLDQTHLETV 333
Query: 296 IPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA 353
IP G V ++NG YRG+ L ++ F A + IE G GR + I YEDI KLA
Sbjct: 334 IPAPGKRVLVLNGGYRGNEGTLESINEKAFSATIVIETGPLKGRRVEGIQYEDISKLA 391
>sp|O60870|KIN17_HUMAN DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2
Length = 393
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 196/361 (54%), Gaps = 29/361 (8%)
Query: 1 MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWA 60
+ + +NP + ++ +SEEF FLEL+RR R+ +VYNEYI R H+HMN+T+W
Sbjct: 54 LLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWE 113
Query: 61 TLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVDEERQEREI 120
TLT+F K+LGR G CKV+ETPKGW+I YIDRD ET+ ++ K+ K D+ DEE+ + I
Sbjct: 114 TLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFI 173
Query: 121 QKQIEI---AASSSVSSTNPLSNSEDNTTRELNLEAAAA-----VGKVGFALGSSYKDNV 172
++Q+ V + LS D NL A LG S +
Sbjct: 174 EEQVRRGLEGKEQEVPTFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTI 233
Query: 173 TSNGSGNNGSSSTRLVFEELDKDNNNNNNNNRKIDKNGSKVSGNSALEELMREEEKVKEK 232
S+ S SS + ++ K SAL+E + E E+ K++
Sbjct: 234 GSSASVKRKESS-------------------QSSTQSKEKKKKKSALDE-IMEIEEEKKR 273
Query: 233 MNRKDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDEL 292
R DYWL IIVK+++K L +K Y+K+K +V++VIDKY ++M++ L++DQ L
Sbjct: 274 TARTDYWLQPEIIVKIITKKLGEK-YHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHL 332
Query: 293 ETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352
ETVIP G + ++NG YRG+ L ++ F A + IE G GR + I YEDI KL
Sbjct: 333 ETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKL 392
Query: 353 A 353
A
Sbjct: 393 A 393
>sp|Q9Y7X9|KIN17_SCHPO KIN17-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPBC365.09c PE=3 SV=1
Length = 304
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 89/144 (61%), Gaps = 7/144 (4%)
Query: 1 MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWA 60
M + NP + ++ +S +F F+ L+R +H +I Y EYI D++HVHMN+TRW
Sbjct: 54 MNVIAMNPGKRIQDFSNQFLRDFISLLRTAHGEKKIHFNQFYQEYIRDKNHVHMNATRWH 113
Query: 61 TLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVDEERQEREI 120
TL+EF K+LGR G C+VEE KG+FI+YID++ + + + KR + + DEE++ R +
Sbjct: 114 TLSEFCKFLGRQGMCRVEENEKGFFISYIDKNPANILRNEANKKRERQEKSDEEQRLRLL 173
Query: 121 QKQIEIAASSSVSSTNPLSNSEDN 144
+QI+ A S+ N+EDN
Sbjct: 174 DEQIKRAYESA-------QNNEDN 190
>sp|P40962|RTS2_YEAST Zinc finger protein RTS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RTS2 PE=1 SV=1
Length = 232
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 15 YSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGK 74
Y+ +FE GFL+L+++ H I A VYNEY+ DR HVHMN+T +LT+FV+YLGR GK
Sbjct: 63 YNIQFEKGFLQLLKQRHGEKWIDANKVYNEYVQDRDHVHMNATMHRSLTQFVRYLGRAGK 122
Query: 75 CKVE 78
V+
Sbjct: 123 VDVD 126
>sp|Q55D16|KIN17_DICDI KIN17-like protein OS=Dictyostelium discoideum GN=DDB_G0269816 PE=3
SV=1
Length = 445
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
Query: 253 LADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGAYRG 312
LA+ Y KQKG + V ++++ ++++L+ +L++DQ LETVIPQIG V IVNG YRG
Sbjct: 349 LANGKYFKQKGYIVSVENEFLAKVKLLDSGDILKIDQTFLETVIPQIGSTVIIVNGKYRG 408
Query: 313 SNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICK 351
A + V+ D F A++ I+ D + + YE K
Sbjct: 409 KEATIKNVNFDDFNAKLYIK----DNDITITLPYESFSK 443
>sp|Q9C801|MOS2_ARATH Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1
Length = 462
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 13/139 (9%)
Query: 202 NNRKIDKNGSKVSGNS-ALEELMREEEKVKEKMNR--------KDYWLCEGIIVKVMSKA 252
N+R+ DK K SG E R E + EK +R K WL I V+++SK
Sbjct: 300 NDREKDK---KTSGRGRGAERGSRSEVRASEKQDRGQTRERKVKPSWLRSHIKVRIVSKD 356
Query: 253 LADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLR-VDQDELETVIPQIGGLVRIVNGAYR 311
+KG V V+ +I M E + +++ VDQ+ LET +P+ GG V +++G ++
Sbjct: 357 WKGGRLYLKKGKVVDVVGPTTCDITMDETQELVQGVDQELLETALPRRGGPVLVLSGKHK 416
Query: 312 GSNARLLGVDTDKFCAQVK 330
G L+ D DK V+
Sbjct: 417 GVYGNLVEKDLDKETGVVR 435
>sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Caenorhabditis elegans
GN=spt-5 PE=3 SV=3
Length = 1208
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 236 KDYWLCEGI-IVKVMSKALADKG--YNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDEL 292
D++L +G+ IV+ + + D +N ++ +++ V D V ++ M + K L VD D+L
Sbjct: 1091 PDHFLAQGVWIVQNLCVQIKDHEGRFNGREAIIKDVTDGKV-DVYMPDHKCNLEVDFDQL 1149
Query: 293 ETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLN 342
+ PQ G R++ G G + +L V D F A ++ ++ + D RV+N
Sbjct: 1150 TPMKPQPGDDARVIFGQDAGHSGQL--VSMDGFEAVIRSQEDMSDMRVIN 1197
>sp|Q90X38|GPKOW_DANRE G patch domain and KOW motifs-containing protein OS=Danio rerio
GN=gpkow PE=2 SV=2
Length = 506
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 239 WLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQ 298
WL + V+ + KA Y K V V+ + E + + + Q LET++P+
Sbjct: 389 WLQRDLRVRFIDKAFKGGKYYNSKMRVEDVLTPHTCVCRTEEGRMLDDIRQKMLETIVPK 448
Query: 299 -IGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDIC 350
+ +V G +RG R+L D +K A V++++ Y+ RV +DY+ IC
Sbjct: 449 NDSDYIMVVLGEHRGQVGRILKRDREKCRAMVQLDR--YEERVFT-LDYDTIC 498
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,979,767
Number of Sequences: 539616
Number of extensions: 5979459
Number of successful extensions: 84321
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 504
Number of HSP's that attempted gapping in prelim test: 28411
Number of HSP's gapped (non-prelim): 21675
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)