Query 018594
Match_columns 353
No_of_seqs 219 out of 346
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1n_A KIN17, protein KIN homo 100.0 1.6E-61 5.6E-66 404.3 8.3 107 1-107 5-111 (111)
2 2ckk_A KIN17; beta barrel, rib 100.0 4.8E-40 1.6E-44 282.2 14.5 123 230-353 5-127 (127)
3 1nz9_A Transcription antitermi 96.9 0.0022 7.7E-08 46.8 6.8 53 296-351 4-57 (58)
4 2e6z_A Transcription elongatio 96.7 0.0027 9.1E-08 47.1 5.3 53 296-352 7-59 (59)
5 3p8b_B Transcription antitermi 96.0 0.013 4.4E-07 50.4 6.5 55 296-352 91-145 (152)
6 2e70_A Transcription elongatio 95.8 0.02 6.9E-07 44.3 6.1 48 297-350 18-65 (71)
7 3u5e_Y L33, YL33, 60S ribosoma 95.0 0.02 7E-07 48.9 4.3 33 298-330 51-83 (127)
8 1vq8_T 50S ribosomal protein L 94.8 0.03 1E-06 47.4 4.8 33 298-330 44-76 (120)
9 2ftc_N Mitochondrial ribosomal 94.7 0.038 1.3E-06 45.0 5.1 31 300-330 1-31 (96)
10 3j21_U 50S ribosomal protein L 94.6 0.037 1.3E-06 46.8 4.8 32 298-329 47-78 (121)
11 3iz5_Y 60S ribosomal protein L 94.4 0.035 1.2E-06 48.6 4.5 32 298-329 50-81 (150)
12 4a17_S RPL26, 60S ribosomal pr 94.4 0.037 1.3E-06 47.7 4.5 32 298-329 50-81 (135)
13 2zkr_t 60S ribosomal protein L 94.4 0.042 1.4E-06 47.9 4.8 33 298-330 50-83 (145)
14 2jvv_A Transcription antitermi 94.2 0.076 2.6E-06 46.6 6.2 52 298-351 129-180 (181)
15 2zjr_R 50S ribosomal protein L 94.1 0.045 1.5E-06 45.9 4.3 33 298-330 17-49 (115)
16 2do3_A Transcription elongatio 94.0 0.047 1.6E-06 42.1 3.8 43 281-324 3-45 (69)
17 3v2d_Y 50S ribosomal protein L 93.9 0.055 1.9E-06 45.1 4.3 32 298-329 8-39 (110)
18 3r8s_U 50S ribosomal protein L 93.6 0.08 2.7E-06 43.5 4.7 31 298-329 5-35 (102)
19 2jz2_A SSL0352 protein; SH3-li 93.1 0.34 1.2E-05 36.7 7.2 56 240-298 2-58 (66)
20 3kbg_A 30S ribosomal protein S 90.9 0.84 2.9E-05 42.0 8.5 75 245-326 87-168 (213)
21 2xhc_A Transcription antitermi 90.1 0.51 1.7E-05 46.3 6.8 50 298-351 300-351 (352)
22 2xzm_W 40S ribosomal protein S 87.7 3.1 0.0001 39.4 10.0 43 281-323 158-203 (260)
23 3bbo_W Ribosomal protein L24; 87.3 0.086 2.9E-06 47.8 -0.8 32 298-329 70-101 (191)
24 2qqr_A JMJC domain-containing 86.9 6.5 0.00022 33.0 10.5 93 248-351 12-112 (118)
25 3fdr_A Tudor and KH domain-con 86.6 4.4 0.00015 31.5 9.0 77 217-298 5-82 (94)
26 1m1h_A Transcription antitermi 86.2 0.14 4.8E-06 47.9 0.0 56 294-351 192-247 (248)
27 3j20_E 30S ribosomal protein S 82.6 3.6 0.00012 38.5 7.9 67 257-323 130-205 (243)
28 2diq_A Tudor and KH domain-con 81.6 4.9 0.00017 32.2 7.4 76 217-297 10-86 (110)
29 3iz6_D 40S ribosomal protein S 81.0 5.6 0.00019 37.7 8.5 69 246-322 124-200 (265)
30 1ssf_A Transformation related 80.3 20 0.00069 31.4 11.2 82 247-331 14-98 (156)
31 3p8d_A Medulloblastoma antigen 78.9 5 0.00017 30.4 6.1 47 248-298 13-59 (67)
32 3h8z_A FragIle X mental retard 78.8 17 0.00057 30.8 10.0 81 242-330 4-97 (128)
33 2do3_A Transcription elongatio 77.7 7.5 0.00026 29.7 6.8 49 239-293 17-65 (69)
34 1qp2_A Protein (PSAE protein); 77.0 5.9 0.0002 30.4 6.0 58 240-300 2-66 (70)
35 2xdp_A Lysine-specific demethy 76.3 18 0.00062 30.4 9.5 92 249-351 14-113 (123)
36 3qii_A PHD finger protein 20; 75.9 6.3 0.00022 31.3 6.1 55 237-298 20-74 (85)
37 1mhn_A SurviVal motor neuron p 75.8 6.5 0.00022 28.3 5.8 45 251-297 13-58 (59)
38 2equ_A PHD finger protein 20-l 75.7 5.6 0.00019 30.5 5.7 42 254-298 21-62 (74)
39 3izc_N 60S ribosomal protein R 75.4 3.2 0.00011 35.8 4.6 37 298-338 16-52 (138)
40 3u5c_E RP5, S7, YS6, 40S ribos 74.4 6.9 0.00024 37.0 7.1 64 258-322 130-200 (261)
41 2e70_A Transcription elongatio 72.9 10 0.00035 29.1 6.5 45 242-292 20-64 (71)
42 2gqc_A Rhomboid intramembrane 71.2 4.7 0.00016 30.3 4.2 32 61-92 14-46 (70)
43 1qp2_A Protein (PSAE protein); 70.2 9.9 0.00034 29.2 5.8 53 298-350 3-59 (70)
44 2d9t_A Tudor domain-containing 70.1 12 0.00041 28.5 6.4 46 251-298 19-65 (78)
45 4a4f_A SurviVal of motor neuro 69.2 12 0.00041 27.4 6.0 51 241-295 10-61 (64)
46 1g5v_A SurviVal motor neuron p 69.1 9.6 0.00033 30.1 5.8 56 238-298 10-66 (88)
47 2g3r_A Tumor suppressor P53-bi 61.9 72 0.0024 26.9 10.8 75 247-324 10-85 (123)
48 4b9w_A TDRD1, tudor domain-con 61.4 44 0.0015 29.1 9.3 76 218-297 44-119 (201)
49 3s6w_A Tudor domain-containing 60.4 16 0.00054 25.6 5.0 43 251-295 11-54 (54)
50 2eqk_A Tudor domain-containing 59.8 28 0.00097 27.5 6.8 58 236-298 19-76 (85)
51 2oqk_A Putative translation in 59.7 17 0.00059 29.9 5.9 63 262-324 35-98 (117)
52 2joy_A 50S ribosomal protein L 59.6 14 0.00046 29.6 5.1 50 239-293 3-55 (96)
53 1s1g_A Potassium voltage-gated 57.9 1.2 4E-05 37.3 -1.6 38 57-96 26-64 (124)
54 4hcz_A PHD finger protein 1; p 57.7 24 0.00083 26.1 5.6 47 238-292 4-51 (58)
55 3iz5_N 60S ribosomal protein L 57.6 7.8 0.00027 33.2 3.5 36 297-336 7-42 (134)
56 4a4f_A SurviVal of motor neuro 56.9 35 0.0012 24.8 6.6 54 295-352 7-61 (64)
57 3izc_N 60S ribosomal protein R 55.9 17 0.00058 31.2 5.3 34 239-277 14-47 (138)
58 4a18_N RPL27, ribosomal protei 55.6 15 0.00053 31.7 5.0 26 298-323 6-31 (144)
59 3iz5_N 60S ribosomal protein L 54.8 24 0.00082 30.1 6.1 33 239-276 6-38 (134)
60 1ah9_A IF1, initiation factor 54.6 41 0.0014 24.9 6.8 56 262-317 9-66 (71)
61 3pnw_C Tudor domain-containing 54.5 32 0.0011 26.2 6.2 59 290-352 4-70 (77)
62 4hcz_A PHD finger protein 1; p 53.5 44 0.0015 24.7 6.5 50 298-352 5-54 (58)
63 2xk0_A Polycomb protein PCL; t 53.2 19 0.00065 27.5 4.6 38 236-281 14-51 (69)
64 4b9x_A TDRD1, tudor domain-con 52.9 47 0.0016 29.6 8.1 76 218-297 44-119 (226)
65 1nz9_A Transcription antitermi 52.0 49 0.0017 23.3 6.5 50 240-294 5-57 (58)
66 3j21_5 50S ribosomal protein L 51.6 12 0.00041 29.3 3.4 29 297-325 4-32 (83)
67 2m0o_A PHD finger protein 1; t 50.4 16 0.00054 28.6 3.8 39 236-281 25-64 (79)
68 3pnw_C Tudor domain-containing 50.0 30 0.001 26.4 5.4 53 241-297 19-72 (77)
69 2joy_A 50S ribosomal protein L 49.3 13 0.00043 29.8 3.3 28 297-324 4-31 (96)
70 1g5v_A SurviVal motor neuron p 48.7 53 0.0018 25.8 6.8 53 296-352 10-63 (88)
71 4a18_F RPL14; ribosome, eukary 48.4 16 0.00056 30.9 4.0 34 299-336 9-42 (126)
72 4a18_F RPL14; ribosome, eukary 48.1 38 0.0013 28.6 6.2 47 240-294 7-55 (126)
73 1jb0_E Photosystem 1 reaction 47.6 46 0.0016 25.7 6.0 39 298-336 2-45 (75)
74 2ldm_A Uncharacterized protein 53.2 3.9 0.00014 32.1 0.0 38 255-295 19-56 (81)
75 3p8b_B Transcription antitermi 46.2 54 0.0018 27.5 7.0 51 240-295 92-145 (152)
76 2hqx_A P100 CO-activator tudor 45.8 1E+02 0.0034 27.4 9.2 75 217-297 41-118 (246)
77 3i4o_A Translation initiation 44.0 43 0.0015 26.0 5.5 58 260-318 15-75 (79)
78 2d9t_A Tudor domain-containing 43.5 58 0.002 24.6 6.1 53 296-352 9-62 (78)
79 2e6z_A Transcription elongatio 42.6 50 0.0017 23.8 5.4 48 240-293 8-57 (59)
80 2equ_A PHD finger protein 20-l 41.2 58 0.002 24.8 5.8 52 295-352 8-59 (74)
81 2l02_A Uncharacterized protein 40.8 17 0.00059 28.6 2.7 23 66-88 43-65 (82)
82 2ckk_A KIN17; beta barrel, rib 40.8 53 0.0018 27.4 6.0 46 242-292 73-123 (127)
83 1d7q_A Translation initiation 40.7 98 0.0034 26.6 7.8 63 261-323 33-96 (143)
84 2wac_A CG7008-PA; unknown func 39.2 48 0.0016 28.6 5.8 75 218-297 28-104 (218)
85 2eqj_A Metal-response element- 39.1 58 0.002 24.7 5.3 27 253-281 24-51 (66)
86 3gas_A Heme oxygenase; FMN-bin 37.1 12 0.00039 34.9 1.4 21 52-72 7-27 (259)
87 3j21_5 50S ribosomal protein L 35.4 34 0.0012 26.7 3.7 50 240-294 4-55 (83)
88 2wsc_E PSAE, PSI-E A, photosys 35.0 6.2 0.00021 33.7 -0.7 58 293-350 77-139 (143)
89 2nz0_B Potassium voltage-gated 34.3 7.3 0.00025 33.2 -0.4 47 48-96 33-86 (140)
90 4a18_N RPL27, ribosomal protei 34.2 43 0.0015 28.9 4.4 28 239-271 4-31 (144)
91 3drz_A BTB/POZ domain-containi 33.2 12 0.0004 30.0 0.7 37 57-96 19-61 (107)
92 2eqj_A Metal-response element- 33.1 1.4E+02 0.0047 22.6 6.5 50 297-351 14-63 (66)
93 1mhn_A SurviVal motor neuron p 32.9 1.3E+02 0.0044 21.2 6.7 52 297-352 4-56 (59)
94 2dgy_A MGC11102 protein; EIF-1 32.9 1.9E+02 0.0064 23.6 8.0 59 261-319 17-77 (111)
95 2z1c_A Hydrogenase expression/ 32.2 87 0.003 24.0 5.5 41 263-308 7-47 (75)
96 3gox_A Restriction endonucleas 31.7 87 0.003 28.4 6.1 51 248-300 19-70 (200)
97 1nn7_A Potassium channel KV4.2 30.3 4.9 0.00017 32.3 -2.0 39 56-96 12-51 (105)
98 2l01_A Uncharacterized protein 30.2 29 0.001 27.0 2.5 23 66-88 46-68 (77)
99 2k5h_A Conserved protein; stru 29.6 1.9E+02 0.0066 22.8 7.4 56 257-320 39-95 (101)
100 4a18_E RPL6; ribosome, eukaryo 28.4 50 0.0017 29.8 4.0 34 299-336 47-80 (191)
101 3s6w_A Tudor domain-containing 28.4 1.5E+02 0.005 20.4 5.8 50 298-351 3-53 (54)
102 2jvv_A Transcription antitermi 28.4 1.2E+02 0.004 26.0 6.3 53 237-294 125-180 (181)
103 3s9x_A ASCH domain; MCSG, PSI- 27.9 66 0.0023 28.1 4.6 36 295-350 72-107 (159)
104 3dcl_A TM1086; SAD, structural 27.6 40 0.0014 32.1 3.3 36 298-333 85-120 (284)
105 3qr8_A GPV, baseplate assembly 27.4 1.9E+02 0.0065 25.4 7.8 46 261-306 19-70 (211)
106 2j49_A Transcription initiatio 25.7 14 0.00046 31.8 -0.2 66 7-72 54-122 (148)
107 3ntk_A Maternal protein tudor; 25.2 3E+02 0.01 23.1 8.4 73 217-297 26-99 (169)
108 1ib8_A Conserved protein SP14. 25.2 1.1E+02 0.0039 26.2 5.7 49 299-351 103-155 (164)
109 3drx_A BTB/POZ domain-containi 24.0 24 0.00083 32.0 1.1 39 56-96 24-67 (202)
110 3fdr_A Tudor and KH domain-con 23.9 1.4E+02 0.0048 22.7 5.5 53 295-352 26-79 (94)
111 3p8d_A Medulloblastoma antigen 23.8 2E+02 0.0068 21.5 6.0 48 298-351 8-55 (67)
112 1jt8_A EIF-1A, probable transl 22.3 90 0.0031 25.2 4.1 61 261-321 22-84 (102)
113 1hr0_W Translation initiation 22.1 30 0.001 25.8 1.2 56 262-317 10-67 (71)
114 1t62_A Conserved hypothetical 21.8 99 0.0034 27.1 4.6 33 270-309 46-78 (166)
115 3m9b_A Proteasome-associated A 20.9 3.7E+02 0.013 25.1 8.5 22 309-330 156-177 (251)
No 1
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-61 Score=404.27 Aligned_cols=107 Identities=50% Similarity=0.958 Sum_probs=105.3
Q ss_pred CcccccCchhhHhhhHHHHHHHHHHHHHhccCCcccccceeeeeecccccceeecccccccHHHHHHHhcccccEEEeec
Q 018594 1 MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEET 80 (353)
Q Consensus 1 m~lf~enp~~~i~~fS~eF~~~Fl~lLr~~~g~krV~aN~vYneyI~dr~HiHMNaT~W~tLt~Fvk~Lgr~G~c~vdet 80 (353)
|+|||+||++||++||++|+++||+||||+||+|||+||+||||||+||+|||||||+|+|||+||+||||+|+|+||+|
T Consensus 5 m~l~~en~~k~i~~fS~eF~~~Fl~lLr~~~g~krV~aN~vYnEyI~dk~HiHMNaT~W~tLT~Fvk~Lgr~G~c~V~et 84 (111)
T 2v1n_A 5 LLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTKWLGREGLCKVDET 84 (111)
T ss_dssp CCCCCCCGGGCHHHHHHHHHHHHHHHHHHHTSSCEEEHHHHHHHHTTSSCCCCGGGSSCSSHHHHHHHHTTTTSEEEEEE
T ss_pred HHHHHhCHhhHHHHHHHHHHHHHHHHHHHhcCCcEeehhHHHHHHhcccccccccccccccHHHHHHHhccCCeEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeecCChHHHHHHHHHHHHhh
Q 018594 81 PKGWFITYIDRDSETLFKEKMKNKRIK 107 (353)
Q Consensus 81 ekGw~I~yId~~pe~~~r~~~~~k~~~ 107 (353)
|+||||+|||+|||+++|+++.+|+++
T Consensus 85 ekG~~I~yId~~pe~l~r~~~~~kk~k 111 (111)
T 2v1n_A 85 PKGWYIQYIDRDPETIRRQLELEKKKK 111 (111)
T ss_dssp TTEEEEEECCSSHHHHHHHHHTGGGTC
T ss_pred CCceEEEeecCCHHHHHHHHHHHhhcC
Confidence 999999999999999999999999864
No 2
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=100.00 E-value=4.8e-40 Score=282.21 Aligned_cols=123 Identities=44% Similarity=0.793 Sum_probs=116.5
Q ss_pred HhhcCCCCCcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecCCCCCeEEEEeCC
Q 018594 230 KEKMNRKDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGA 309 (353)
Q Consensus 230 k~~~~r~~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP~~G~~V~IV~G~ 309 (353)
|++.+|+++||+|||+|||+++++++| ||++||+|++|.++|+|.|+|+++|++|.|+|+|||||||++|++||||+|+
T Consensus 5 k~~~~~~~~Wl~~~I~Vrii~k~~~~g-~y~~KgvV~~V~~~~~c~V~l~~~g~~v~v~q~~LETViP~~g~~V~Iv~G~ 83 (127)
T 2ckk_A 5 KKRTARTDYWLQPEIIVKIITKKLGEK-YHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGG 83 (127)
T ss_dssp ---CCCCSCCCCTTBEEEECCSTTCGG-GTTCEEEEEEEETTTEEEEEETTTCCEEEEEGGGEEECCCCTTCEEEECSST
T ss_pred ccccCCCCCcccCCeEEEEEEccCCCc-ccCceEEEEEecCCCeEEEEECCCCCEEEEchHHcEEecCCCCCEEEEEecc
Confidence 346889999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeeCCccEEEEEEeccccCCceeeecccccccccC
Q 018594 310 YRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA 353 (353)
Q Consensus 310 ~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl~ 353 (353)
|||++|+|+++|.++|+|.|+|++||.+++.++.++|||||||+
T Consensus 84 ~rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~~ 127 (127)
T 2ckk_A 84 YRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 127 (127)
T ss_dssp TTTCEEEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEBC
T ss_pred cCCcEEEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhhccC
Confidence 99999999999999999999999998888888889999999985
No 3
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=96.95 E-value=0.0022 Score=46.83 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=41.9
Q ss_pred cCCCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCcee-eecccccccc
Q 018594 296 IPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVL-NAIDYEDICK 351 (353)
Q Consensus 296 IP~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v-~~l~yedicK 351 (353)
-..+|+.|.|+.|++.|..|++.++|.++..+.|.+.- .|+.. -.++|++|-+
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~---~Gr~t~v~l~~~~vek 57 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTI---FGRETPVELDFSQVVK 57 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEES---SSSEEEEEECGGGEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEe---CCCEEEEEECHHHEEE
Confidence 34789999999999999999999999998888887764 24422 2388887755
No 4
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.66 E-value=0.0027 Score=47.11 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=41.5
Q ss_pred cCCCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccccc
Q 018594 296 IPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352 (353)
Q Consensus 296 IP~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl 352 (353)
-+.+|+.|.|+.|++.|..|++.++|.+ .+.|.+.-... ...++ ++|.+|.|+
T Consensus 7 ~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V~v~~fg~-~tpve-l~~~qv~K~ 59 (59)
T 2e6z_A 7 GFQPGDNVEVCEGELINLQGKILSVDGN--KITIMPKHEDL-KDMLE-FPAQELRKY 59 (59)
T ss_dssp SCCTTSEEEECSSTTTTCEEEECCCBTT--EEEEEECCSSC-CSCEE-EETTTEEEC
T ss_pred cCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEEEEEecCC-CceEE-EcHHHEEEC
Confidence 4578999999999999999999999986 57776652212 23464 999998875
No 5
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=95.96 E-value=0.013 Score=50.37 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=44.6
Q ss_pred cCCCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccccc
Q 018594 296 IPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352 (353)
Q Consensus 296 IP~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl 352 (353)
-+.+|+.|.|+.|++.|..|++.++|.++..+.|.+.-- .....+ .|+|++|-++
T Consensus 91 ~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~-gr~tpv-el~~~~v~~i 145 (152)
T 3p8b_B 91 GLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDA-IVPIPV-TIKGDYVRLI 145 (152)
T ss_dssp TCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSC-SSCCEE-EEEGGGEEEE
T ss_pred cCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEec-ceeEEE-EECHHHEEEe
Confidence 347899999999999999999999999999999988752 122245 4888888654
No 6
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.76 E-value=0.02 Score=44.35 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=39.5
Q ss_pred CCCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccc
Q 018594 297 PQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDIC 350 (353)
Q Consensus 297 P~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedic 350 (353)
|.+|..|+|..|+|+|..|.+.+..... |.|+|.+. .++|. ++.++++
T Consensus 18 ~liGktV~I~kGpyKG~~GiVkd~t~~~--~RVELhs~---~K~Vt-V~r~~l~ 65 (71)
T 2e70_A 18 ELIGQTVRISQGPYKGYIGVVKDATEST--ARVELHST---CQTIS-VDRQRLT 65 (71)
T ss_dssp SSTTSEEEECSSTTTTCEEEEEEECSSC--EEEEESSS---CCEEE-ECTTTEE
T ss_pred ccCCCEEEEeccCCCCeEEEEEECCCCe--EEEEecCC---ceEEE-EEhhhcc
Confidence 4579999999999999999999998777 88888873 46664 7777664
No 7
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=94.98 E-value=0.02 Score=48.86 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=30.3
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEEE
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVK 330 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~ 330 (353)
..|+.|+||.|.|+|..|+++.++.+++.+.|+
T Consensus 51 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 83 (127)
T 3u5e_Y 51 RRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD 83 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred cCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence 569999999999999999999999999888773
No 8
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=94.80 E-value=0.03 Score=47.36 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=30.7
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEEE
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVK 330 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~ 330 (353)
..|+.|+||.|.++|..|+++.++..++.+.|+
T Consensus 44 kkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VE 76 (120)
T 1vq8_T 44 NAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 76 (120)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred cCCCEEEEEecCCCCCEEEEEEEECCCCEEEEe
Confidence 569999999999999999999999999988874
No 9
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=94.75 E-value=0.038 Score=45.00 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=28.8
Q ss_pred CCeEEEEeCCCCCceEEEEeeeCCccEEEEE
Q 018594 300 GGLVRIVNGAYRGSNARLLGVDTDKFCAQVK 330 (353)
Q Consensus 300 G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~ 330 (353)
|+.|+||.|.++|..|++++++.+++.+.|+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVe 31 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG 31 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 7899999999999999999999999888773
No 10
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.55 E-value=0.037 Score=46.83 Aligned_cols=32 Identities=31% Similarity=0.699 Sum_probs=29.9
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEE
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQV 329 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V 329 (353)
..|+.|.||.|.++|..|+++.++.+++.+.|
T Consensus 47 kkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~V 78 (121)
T 3j21_U 47 RVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYV 78 (121)
T ss_dssp CSSSEEEECSSSCSSEEEEEEEEETTTTEEEE
T ss_pred ccCCEEEEeecCCCCcEeEEEEEEecCCEEEE
Confidence 56999999999999999999999999988876
No 11
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=94.43 E-value=0.035 Score=48.62 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=29.8
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEE
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQV 329 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V 329 (353)
..|+.|+||.|.|+|..|+++.++.+++.+.|
T Consensus 50 kKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~V 81 (150)
T 3iz5_Y 50 RKDDEVQVVRGSYKGREGKVVQVYRRRWVIHV 81 (150)
T ss_dssp CSSSEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEeecCCCCccceEEEEEcCCCEEEE
Confidence 56999999999999999999999999988876
No 12
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=94.40 E-value=0.037 Score=47.69 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=29.8
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEE
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQV 329 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V 329 (353)
..|+.|+||.|.|+|..|+++.++..++.+.|
T Consensus 50 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~V 81 (135)
T 4a17_S 50 RKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHV 81 (135)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred cCCCEEEEeecCCCCceeeEEEEEcCCCEEEE
Confidence 56999999999999999999999999988876
No 13
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=94.36 E-value=0.042 Score=47.92 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=30.5
Q ss_pred CCCCeEEEEeCCCCCce-EEEEeeeCCccEEEEE
Q 018594 298 QIGGLVRIVNGAYRGSN-ARLLGVDTDKFCAQVK 330 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~-g~L~siD~~~~~a~V~ 330 (353)
..|+.|.||.|.++|.. |+++.++..++.+.|+
T Consensus 50 kkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VE 83 (145)
T 2zkr_t 50 RKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIE 83 (145)
T ss_dssp CTTCEEEECSSTTTTCCSEEEEEEETTTTEEEET
T ss_pred CCCCEEEEeecCCCCcceeEEEEEECCCCEEEEe
Confidence 56999999999999999 9999999999988874
No 14
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=94.17 E-value=0.076 Score=46.63 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=39.4
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCceeeecccccccc
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICK 351 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicK 351 (353)
.+|+.|.|+.|++.|..|++.++|.++..+.|.+.- ......+ .|+|++|-|
T Consensus 129 ~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~i-fgr~t~v-el~~~qvek 180 (181)
T 2jvv_A 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI-FGRATPV-ELDFSQVEK 180 (181)
T ss_dssp CTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEE-TTEEEEE-EECTTTEEE
T ss_pred CCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEE-CCCCEEE-EECHHHEEE
Confidence 589999999999999999999999887777665552 1012234 488888765
No 15
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=94.11 E-value=0.045 Score=45.88 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=30.8
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEEE
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVK 330 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~ 330 (353)
..|+.|.||.|.++|..|++++++.++..+.|+
T Consensus 17 kkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VE 49 (115)
T 2zjr_R 17 KKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE 49 (115)
T ss_dssp CTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred cCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 579999999999999999999999999988874
No 16
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=93.98 E-value=0.047 Score=42.08 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=33.3
Q ss_pred CCeEEEEcCCceeeecCCCCCeEEEEeCCCCCceEEEEeeeCCc
Q 018594 281 KKHVLRVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDK 324 (353)
Q Consensus 281 ~g~~l~vdq~~LETVIP~~G~~V~IV~G~~RG~~g~L~siD~~~ 324 (353)
+|..+.++.+.|.-. -++|+.|+|+.|.|.|.+|.++.++.+-
T Consensus 3 ~~~~i~~p~~~LrK~-F~~GDHVkVi~G~~~getGlVV~v~~d~ 45 (69)
T 2do3_A 3 SGSSGEFPAQELRKY-FKMGDHVKVIAGRFEGDTGLIVRVEENF 45 (69)
T ss_dssp SCSCCCCCCCCCCSS-CCTTCEEEESSSTTTTCEEEEEEECSSC
T ss_pred CCcEEEEcHHHceee-ccCCCeEEEeccEEcCceEEEEEEeCCE
Confidence 455566666665432 3579999999999999999999999664
No 17
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=93.86 E-value=0.055 Score=45.08 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=30.1
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEE
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQV 329 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V 329 (353)
..|+.|.||.|.++|..|++++++.++..+.|
T Consensus 8 kkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViV 39 (110)
T 3v2d_Y 8 KKGDTVLVASGKYKGRVGKVKEVLPKKYAVIV 39 (110)
T ss_dssp CTTSEEEECSSTTTTCEEEEEEEEGGGTEEEE
T ss_pred CCCCEEEEeEcCCCCeEeEEEEEECCCCEEEE
Confidence 57999999999999999999999999988877
No 18
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=93.55 E-value=0.08 Score=43.53 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=28.6
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEE
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQV 329 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V 329 (353)
..|+.|+||.|.++|..|++++++.+ ..+.|
T Consensus 5 kkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViV 35 (102)
T 3r8s_U 5 RRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIV 35 (102)
T ss_dssp CSSCEEEECSSSSTTCEEEEEEEETT-TEEEE
T ss_pred cCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEE
Confidence 46999999999999999999999998 87776
No 19
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=93.13 E-value=0.34 Score=36.71 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=44.2
Q ss_pred ccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCC-CeEEEEcCCceeeecCC
Q 018594 240 LCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEK-KHVLRVDQDELETVIPQ 298 (353)
Q Consensus 240 L~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~-g~~l~vdq~~LETVIP~ 298 (353)
+.||..|+|++- .+ -||.=.|.|..|.|+..|++.=-.+ ++.+++.-+.||.|-+.
T Consensus 2 ilPG~~V~V~np--~~-~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~~~~~ 58 (66)
T 2jz2_A 2 IFPGATVRVTNV--DD-TYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEAVKPI 58 (66)
T ss_dssp CCTTCEEEECCT--TS-TTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEECCCC
T ss_pred ccCCCEEEEeCC--CC-cccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHceecccc
Confidence 569999999865 34 7999999999999997776654433 44668999999988654
No 20
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=90.87 E-value=0.84 Score=42.02 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=51.6
Q ss_pred EEEEeecccCCcccccceeEEEEecCCceEEEEecC----CCeEEE--EcCCceeeecC-CCCCeEEEEeCCCCCceEEE
Q 018594 245 IVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLE----KKHVLR--VDQDELETVIP-QIGGLVRIVNGAYRGSNARL 317 (353)
Q Consensus 245 vVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d----~g~~l~--vdq~~LETVIP-~~G~~V~IV~G~~RG~~g~L 317 (353)
.+||.++ +..++|+..=+.-..+..+. +| .++.+. ++...+--.|| ..|..+||+.|.+.|.+|++
T Consensus 87 LcKV~~k------~~~~~G~~~l~~HDGrti~~-pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I 159 (213)
T 3kbg_A 87 LLKVRSK------VIAPGNRIQLGTHDGRTFIT-DDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTI 159 (213)
T ss_dssp EEEEEEE------EEEGGGEEEEEETTSCEEEE-CCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEEE
T ss_pred EEEEEEE------EEecCCeeEEEecCccEEEc-CCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEEE
Confidence 3677654 55667787777543233333 33 366665 44455666677 88999999999999999999
Q ss_pred EeeeCCccE
Q 018594 318 LGVDTDKFC 326 (353)
Q Consensus 318 ~siD~~~~~ 326 (353)
.+|..-.++
T Consensus 160 ~~ie~~~gs 168 (213)
T 3kbg_A 160 SKIEAKEGS 168 (213)
T ss_dssp EEECCCSCC
T ss_pred EEEEEccCC
Confidence 999864433
No 21
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=90.12 E-value=0.51 Score=46.27 Aligned_cols=50 Identities=18% Similarity=0.430 Sum_probs=40.3
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCc--eeeecccccccc
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGR--VLNAIDYEDICK 351 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~--~v~~l~yedicK 351 (353)
.+|+.|.|+.|++.|..|++.++|.++..+.|.|.- -|+ .+ .|+|++|-|
T Consensus 300 ~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~i---fGR~tpV-eL~~~qVek 351 (352)
T 2xhc_A 300 KVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTI---FGRETPV-VLHVSEVEK 351 (352)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEE---TTEEEEE-EEEGGGEEC
T ss_pred CCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEE---CCCcEEE-EEchHHEEE
Confidence 589999999999999999999999988777776653 233 34 488888765
No 22
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=87.68 E-value=3.1 Score=39.36 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=33.4
Q ss_pred CCeEE--EEcCCceeeecC-CCCCeEEEEeCCCCCceEEEEeeeCC
Q 018594 281 KKHVL--RVDQDELETVIP-QIGGLVRIVNGAYRGSNARLLGVDTD 323 (353)
Q Consensus 281 ~g~~l--~vdq~~LETVIP-~~G~~V~IV~G~~RG~~g~L~siD~~ 323 (353)
.++.+ .++...+--.|| ..|..+||..|.+.|.+|++.++...
T Consensus 158 ~~Dtv~idl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~ 203 (260)
T 2xzm_W 158 IGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKH 203 (260)
T ss_dssp TTBEEEEETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEECC
T ss_pred cCCeEEEeCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEEec
Confidence 46666 455445556677 88999999999999999999987543
No 23
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=87.32 E-value=0.086 Score=47.84 Aligned_cols=32 Identities=13% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEE
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQV 329 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V 329 (353)
..|+.|+||.|.++|..|++++++.+++.+.|
T Consensus 70 kKGD~V~VIaGkDKGK~GkVl~V~~k~~rViV 101 (191)
T 3bbo_W 70 KVGDTVKVISGGEKGKIGEISKIHKHNSTVII 101 (191)
T ss_dssp CCSSCEEECSSSSTTCCCSCCCCCSSSCCCCC
T ss_pred ecCCEEEEeecCCCCceEEEEEEECCCCEEEE
Confidence 46999999999999999999999999887766
No 24
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=86.89 E-value=6.5 Score=32.96 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=56.4
Q ss_pred EeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceee------ecCCCCCeEEEEe--CCCCCceEEEEe
Q 018594 248 VMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELET------VIPQIGGLVRIVN--GAYRGSNARLLG 319 (353)
Q Consensus 248 Ii~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LET------VIP~~G~~V~IV~--G~~RG~~g~L~s 319 (353)
|+.| ..+|+|| +|.|+++.....|.|..+|+.-.-.+..+++.. =.|.+|..|.|.. |. =--|+.++
T Consensus 12 V~ak-h~ngryy--~~~V~~~~~~~~y~V~F~DgS~s~dl~peDIvs~dc~~~GpP~~G~~V~V~W~DG~--~y~a~f~g 86 (118)
T 2qqr_A 12 VISK-HKNGRFY--QCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQ--VYGAKFVA 86 (118)
T ss_dssp EEEE-CTTSSEE--EEEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSC--EEEEEEEE
T ss_pred EEEE-CCCCCEE--eEEEEEEeeEEEEEEEcCCCCccCCCCHhhcccccccccCCCCCCCEEEEEcCCCC--EeeeEEec
Confidence 3444 4578999 799999988888999887643333455555433 3678999999985 32 11233343
Q ss_pred eeCCccEEEEEEeccccCCceeeecccccccc
Q 018594 320 VDTDKFCAQVKIEKGVYDGRVLNAIDYEDICK 351 (353)
Q Consensus 320 iD~~~~~a~V~l~~g~~~g~~v~~l~yedicK 351 (353)
..... .-+|.++.| ..+ .+.=+||+-
T Consensus 87 ~~~~~-~Y~V~feDg----s~~-~~kR~~iyt 112 (118)
T 2qqr_A 87 SHPIQ-MYQVEFEDG----SQL-VVKRDDVYT 112 (118)
T ss_dssp EEEEE-EEEEEETTS----CEE-EECGGGEEE
T ss_pred eeEEE-EEEEEECCC----CEE-EEcHHHeec
Confidence 32221 245666653 434 366666653
No 25
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=86.62 E-value=4.4 Score=31.47 Aligned_cols=77 Identities=10% Similarity=0.083 Sum_probs=52.6
Q ss_pred ChHHHHHHH-HHHHHhhcCCCCCcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeee
Q 018594 217 SALEELMRE-EEKVKEKMNRKDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETV 295 (353)
Q Consensus 217 saLdeime~-ee~kk~~~~r~~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETV 295 (353)
.+|++||.. ++--.........| .+|-.|-+. .-.||.+|- |.|.++.+...|.|...|-|..-.|+-++|-++
T Consensus 5 ~~Le~Lm~~m~~~y~~~~~~~~~~-~~G~~c~a~--~~~d~~wyR--A~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr~l 79 (94)
T 3fdr_A 5 LQLDKLVNEMTQHYENSVPEDLTV-HVGDIVAAP--LPTNGSWYR--ARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL 79 (94)
T ss_dssp CHHHHHHHHHHHHHTTCCCCCCCC-CTTCEEEEE--ETTTTEEEE--EEEEEECTTSCEEEEETTTCCEEEECGGGCEEC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCC-CCCCEEEEE--ECCCCeEEE--EEEEEECCCCeEEEEEEcCCCeEEEEHHHhhhc
Confidence 578999854 44332222233345 455444332 235778886 899999876689999999999999999998876
Q ss_pred cCC
Q 018594 296 IPQ 298 (353)
Q Consensus 296 IP~ 298 (353)
.|.
T Consensus 80 ~~~ 82 (94)
T 3fdr_A 80 RSD 82 (94)
T ss_dssp CGG
T ss_pred CHH
Confidence 653
No 26
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=86.23 E-value=0.14 Score=47.95 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred eecCCCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCceeeecccccccc
Q 018594 294 TVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICK 351 (353)
Q Consensus 294 TVIP~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicK 351 (353)
.+-+.+|+.|+|+.|++.|..|++.++|.++..+.|.+.- -.....| .|+|++|-|
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~i-fgr~tpv-~l~~~~vek 247 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISI-FGRMTPV-ELDFDQVEK 247 (248)
T ss_dssp ----------------------------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEe-CCCcEEE-EEcHHHEEe
Confidence 4456789999999999999999999999887666655431 0012234 378877755
No 27
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=82.63 E-value=3.6 Score=38.48 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=44.5
Q ss_pred ccccceeEEEEecCCceEEEEe------cCCCeEEE--EcCCceeeecC-CCCCeEEEEeCCCCCceEEEEeeeCC
Q 018594 257 GYNKQKGVVRKVIDKYVGEIEM------LEKKHVLR--VDQDELETVIP-QIGGLVRIVNGAYRGSNARLLGVDTD 323 (353)
Q Consensus 257 kyYk~KgvV~~V~d~~~c~V~l------~d~g~~l~--vdq~~LETVIP-~~G~~V~IV~G~~RG~~g~L~siD~~ 323 (353)
++...+|++.=+.-..+..+.- ...++.+. ++...+--.|| ..|..+||+.|.+.|.+|++.+|..-
T Consensus 130 k~~~~~G~~~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~ 205 (243)
T 3j20_E 130 KRMIKGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRF 205 (243)
T ss_dssp EEEETTTEEEECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCC
T ss_pred eEEccCCeeEEEecCCceEEcccccCCCcccCCEEEEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEe
Confidence 4555677776554322322221 12467665 44445555566 88999999999999999999999753
No 28
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=81.64 E-value=4.9 Score=32.19 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=51.3
Q ss_pred ChHHHHHHH-HHHHHhhcCCCCCcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeee
Q 018594 217 SALEELMRE-EEKVKEKMNRKDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETV 295 (353)
Q Consensus 217 saLdeime~-ee~kk~~~~r~~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETV 295 (353)
.+|++||.. ++--.........|- +|-.|-. +.-.||++|- |.|.++.+...|.|...|-|....|+.++|-++
T Consensus 10 ~~l~~L~~~m~~~y~~~~~~~~~~~-~G~~c~a--~~~~d~~wyR--A~V~~~~~~~~~~V~fvDyGn~e~v~~~~Lr~l 84 (110)
T 2diq_A 10 LQLDKLVNEMTQHYENSVPEDLTVH-VGDIVAA--PLPTNGSWYR--ARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL 84 (110)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCCC-TTCEEEE--CCTTTCSCEE--EEECCCCSSSCEEEEETTTCCEEEECGGGCEEC
T ss_pred HHHHHHHHHHHHHHccCCCCCCCCC-CCCEEEE--EECCCCeEEE--EEEEEECCCCeEEEEEEeCCCeEEEehHHhhcC
Confidence 458888854 332222223334564 4544423 3335778886 789999875689999999999999999998876
Q ss_pred cC
Q 018594 296 IP 297 (353)
Q Consensus 296 IP 297 (353)
.|
T Consensus 85 ~~ 86 (110)
T 2diq_A 85 RS 86 (110)
T ss_dssp CH
T ss_pred cH
Confidence 54
No 29
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=80.99 E-value=5.6 Score=37.68 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=45.4
Q ss_pred EEEeecccCCcccccceeEEEEec-CCceEEEEecC----CCeEEE--EcCCceeeecC-CCCCeEEEEeCCCCCceEEE
Q 018594 246 VKVMSKALADKGYNKQKGVVRKVI-DKYVGEIEMLE----KKHVLR--VDQDELETVIP-QIGGLVRIVNGAYRGSNARL 317 (353)
Q Consensus 246 VKIi~K~l~dGkyYk~KgvV~~V~-d~~~c~V~l~d----~g~~l~--vdq~~LETVIP-~~G~~V~IV~G~~RG~~g~L 317 (353)
+||..+ +...+|+..=+. |+.+ +..+| .++.|. ++...+--.|| ..|..+||+.|.+.|.+|++
T Consensus 124 cKV~~k------~~~~~G~pql~tHDGrt--i~~~dp~ik~~DTv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I 195 (265)
T 3iz6_D 124 CKVRSV------QFGQKGIPYLNTYDGRT--IRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVI 195 (265)
T ss_dssp EEEEEE------ECCSSSCCEEEETTSCC--CBSCSSCCCTTCEEEECSSSCCEEEEECCSTTCEEEECSSSSCSCEEEE
T ss_pred EEEEEE------EEccCCceEEEeecceE--EecCCCCcccCCEEEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEE
Confidence 566654 344456554443 3322 23222 366665 44445555666 88999999999999999999
Q ss_pred EeeeC
Q 018594 318 LGVDT 322 (353)
Q Consensus 318 ~siD~ 322 (353)
.+|..
T Consensus 196 ~~ie~ 200 (265)
T 3iz6_D 196 KNREK 200 (265)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99975
No 30
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=80.27 E-value=20 Score=31.39 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=57.3
Q ss_pred EEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecC-CCCCeEEEEeCCCCCceEEEEeeeCC--
Q 018594 247 KVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIP-QIGGLVRIVNGAYRGSNARLLGVDTD-- 323 (353)
Q Consensus 247 KIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP-~~G~~V~IV~G~~RG~~g~L~siD~~-- 323 (353)
||..+=-.++.||. |.|..+..+..+.|..+| |..-.|.+.++=-|.| .++..|.-+.|..-+..|.+...+.+
T Consensus 14 rVfArWsd~~yyYp--G~V~~~~~~~~Y~V~FdD-G~~k~v~~~divv~~~LP~~~~V~A~~~ddy~s~giI~~h~~~~~ 90 (156)
T 1ssf_A 14 RVVAKWSSNGYFYS--GKITRDVGAGKYKLLFDD-GYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESG 90 (156)
T ss_dssp EEEECSSCSSEEEE--EEEEECCTTTEEEEECTT-SCEEEEETTTEEEECCSCSSEEEEESSCTTTCEEEEEEEEEEETT
T ss_pred EEEEEcCCCCcccc--cEEEEeccCCEEEEEEcC-CCeeEeeccceEEEeccCCCcEEEEccCCccccccEEEeecCCCC
Confidence 44555555644444 899999888899998765 7777787777766666 45788988888888888988865443
Q ss_pred ccEEEEEE
Q 018594 324 KFCAQVKI 331 (353)
Q Consensus 324 ~~~a~V~l 331 (353)
+..-.|++
T Consensus 91 e~~Y~Ve~ 98 (156)
T 1ssf_A 91 ELYYSIEK 98 (156)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEe
Confidence 33334444
No 31
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=78.90 E-value=5 Score=30.44 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=37.9
Q ss_pred EeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecCC
Q 018594 248 VMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQ 298 (353)
Q Consensus 248 Ii~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP~ 298 (353)
|+-+- +||+||- |.|.+|.+..+++|...| |....|...+|-+....
T Consensus 13 vmArW-~D~~yYp--A~I~si~~~~~Y~V~F~d-G~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 13 VLACW-SDCRFYP--AKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (67)
T ss_dssp EEEEC-TTSCEEE--EEEEEECTTSEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred EEEEc-CCCCEee--EEEEEECCCCeEEEEEeC-CceEEEeHHHcccCCcc
Confidence 44454 8999997 799999987789999988 99999999998876653
No 32
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=78.80 E-value=17 Score=30.76 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=56.1
Q ss_pred CCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCe-EEEEcCCceeeecC-------CCCCeEEEEeC-CC--
Q 018594 242 EGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKH-VLRVDQDELETVIP-------QIGGLVRIVNG-AY-- 310 (353)
Q Consensus 242 ~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~-~l~vdq~~LETVIP-------~~G~~V~IV~G-~~-- 310 (353)
.++.|-|... +|.||+ |.|++|.+. .+.|...++=. .-+|+-+++-++.| ..|+.|-|..= ..
T Consensus 4 ~~~~VEV~~~---~G~~y~--a~V~~v~~d-~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~e 77 (128)
T 3h8z_A 4 QGLPVEVRGS---NGAFYK--GFVKDVHED-SVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQE 77 (128)
T ss_dssp TTCEEEEECT---TSCEEE--EEEEEECSS-EEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---C
T ss_pred cccEEEEecC---CCCEEE--EEEEEEeCC-cEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCC
Confidence 5778888764 578997 999998665 78888865422 34677777877665 47999999842 12
Q ss_pred --CCceEEEEeeeCCccEEEEE
Q 018594 311 --RGSNARLLGVDTDKFCAQVK 330 (353)
Q Consensus 311 --RG~~g~L~siD~~~~~a~V~ 330 (353)
.--.|++..+..+- ..|.
T Consensus 78 p~gWw~a~I~~~kg~f--~~V~ 97 (128)
T 3h8z_A 78 PCGWWLARVRMMKGDF--YVIE 97 (128)
T ss_dssp CCEEEEEEEEEEETTE--EEEE
T ss_pred cCccEEEEEEEeeCCE--EEEE
Confidence 23478888887654 3455
No 33
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=77.72 E-value=7.5 Score=29.73 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=40.8
Q ss_pred cccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCcee
Q 018594 239 WLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELE 293 (353)
Q Consensus 239 WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LE 293 (353)
-+.+|=.|||+ .|+|-+..|.|+.|.+. .|++..+-+..-++|-..+|.
T Consensus 17 ~F~~GDHVkVi-----~G~~~getGlVV~v~~d-~v~v~SD~t~~Ei~V~~~dL~ 65 (69)
T 2do3_A 17 YFKMGDHVKVI-----AGRFEGDTGLIVRVEEN-FVILFSDLTMHELKVLPRDLQ 65 (69)
T ss_dssp SCCTTCEEEES-----SSTTTTCEEEEEEECSS-CEEEEESSSCSEEEECTTSEE
T ss_pred eccCCCeEEEe-----ccEEcCceEEEEEEeCC-EEEEEeCCCCCEEEEEhHHhh
Confidence 45678889999 56899999999999876 777777777888898888875
No 34
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=76.95 E-value=5.9 Score=30.44 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=43.5
Q ss_pred ccCCcEEEEeecccCCcccccceeEEEEecC---CceEEEEecCC--CeEE--EEcCCceeeecCCCC
Q 018594 240 LCEGIIVKVMSKALADKGYNKQKGVVRKVID---KYVGEIEMLEK--KHVL--RVDQDELETVIPQIG 300 (353)
Q Consensus 240 L~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d---~~~c~V~l~d~--g~~l--~vdq~~LETVIP~~G 300 (353)
+.+|-.|||.++ +.=||+.-|.|..|.+ +|-+.|..... +.+. ....+.||-|-|..|
T Consensus 2 i~rGs~VrIlr~---eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe~v~~~~~ 66 (70)
T 1qp2_A 2 VQRGSKVRILRP---ESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELVEVEAPKA 66 (70)
T ss_dssp CCTTCEEEECCT---TSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEEECCCCCS
T ss_pred cCCCCEEEEcCc---cceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHeeEeccCcc
Confidence 457889999876 3479999999999976 45688887542 2223 488899999987555
No 35
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=76.33 E-value=18 Score=30.44 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=56.1
Q ss_pred eecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCcee------eecCCCCCeEEEEe--CCCCCceEEEEee
Q 018594 249 MSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELE------TVIPQIGGLVRIVN--GAYRGSNARLLGV 320 (353)
Q Consensus 249 i~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LE------TVIP~~G~~V~IV~--G~~RG~~g~L~si 320 (353)
+.| ..+|+||. |.|+++.....|.|..+|+.-.-.+..+++- -=.|.+|..|.|.. |..- -|+..+.
T Consensus 14 ~ak-~~ngryy~--~~V~~~~~~~~y~V~F~DgS~s~dl~PedIvs~dc~~~GpP~~G~~V~V~W~DG~~y--~a~f~g~ 88 (123)
T 2xdp_A 14 ITK-HRNTRYYS--CRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRDCLKLGPPAEGEVVQVKWPDGKLY--GAKYFGS 88 (123)
T ss_dssp CCC-CCCCCCCC--CEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCEE--EEEEEEE
T ss_pred EEE-CCCCcEEe--EEEEEEeeEEEEEEEcCCCCccCCCCHhHcccccccccCCCCCCCEEEEEcCCCCEE--eEEEeee
Confidence 344 45789997 5888888877899988764322234333332 23688999999995 5422 2555555
Q ss_pred eCCccEEEEEEeccccCCceeeecccccccc
Q 018594 321 DTDKFCAQVKIEKGVYDGRVLNAIDYEDICK 351 (353)
Q Consensus 321 D~~~~~a~V~l~~g~~~g~~v~~l~yedicK 351 (353)
.... .-+|.++.| ..+ .+.=+||+-
T Consensus 89 ~~~~-~YtV~FeDg----s~~-~~kR~~iyt 113 (123)
T 2xdp_A 89 NIAH-MYQVEFEDG----SQI-AMKREDIYT 113 (123)
T ss_dssp EEEE-EEEEECTTS----CEE-EEEGGGCCC
T ss_pred eeEE-EEEEEECCC----CeE-EecHHHccc
Confidence 3222 245566653 434 367777764
No 36
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=75.87 E-value=6.3 Score=31.32 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=41.3
Q ss_pred CCcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecCC
Q 018594 237 DYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQ 298 (353)
Q Consensus 237 ~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP~ 298 (353)
..|..-+ +|.-+- +||+||- |.|.+|.+..+.+|...| |.+..|...+|-++...
T Consensus 20 ~~f~vGd---~VlArW-~D~~yYP--AkI~sV~~~~~YtV~F~D-G~~etvk~~~IKp~~~~ 74 (85)
T 3qii_A 20 SEFQINE---QVLACW-SDCRFYP--AKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAFSKD 74 (85)
T ss_dssp -CCCTTC---EEEEEC-TTSCEEE--EEEEEECTTSEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred cccccCC---EEEEEe-CCCCEee--EEEEEECCCCeEEEEEeC-CCeEEecHHHcccCChh
Confidence 4564333 344455 9999997 799999987789999988 99999999999887654
No 37
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=75.77 E-value=6.5 Score=28.27 Aligned_cols=45 Identities=7% Similarity=-0.133 Sum_probs=36.0
Q ss_pred cccCCcccccceeEEEEecC-CceEEEEecCCCeEEEEcCCceeeecC
Q 018594 251 KALADKGYNKQKGVVRKVID-KYVGEIEMLEKKHVLRVDQDELETVIP 297 (353)
Q Consensus 251 K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~g~~l~vdq~~LETVIP 297 (353)
+.-.||.||. |+|.++.. ...|.|...|=|..-.|+.+.|-++.|
T Consensus 13 ~~s~Dg~wYr--A~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 13 IWSEDGCIYP--ATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp ECTTTSCEEE--EEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred EECCCCCEEE--EEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 4445889987 78999975 469999999989998899888877543
No 38
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.67 E-value=5.6 Score=30.55 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=34.7
Q ss_pred CCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecCC
Q 018594 254 ADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQ 298 (353)
Q Consensus 254 ~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP~ 298 (353)
.||.||. |.|.+|.+..+|+|...|. ..-.|+.++|-++-|.
T Consensus 21 sDg~~Y~--A~I~~v~~~~~~~V~f~Dy-n~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 21 TDCRYYP--AKIEAINKEGTFTVQFYDG-VIRCLKRMHIKAMPED 62 (74)
T ss_dssp SSSSEEE--EEEEEESTTSSEEEEETTS-CEEEECGGGEECCCGG
T ss_pred CCCCEEE--EEEEEECCCCEEEEEEecC-CeEEecHHHCeeCChh
Confidence 3889997 8999998766899999875 7778999999887664
No 39
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=75.39 E-value=3.2 Score=35.80 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=29.4
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCC
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDG 338 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g 338 (353)
.+|.-|+|+.|.|.|..+.++++-.+++ |.| .||..|
T Consensus 16 e~GrVV~i~~Gr~aGk~avIV~iiD~~r-VLV---DGp~~g 52 (138)
T 3izc_N 16 EVGRVVLIKKGQSAGKLAAIVEIIDQKK-VLI---DGPKAG 52 (138)
T ss_dssp STTEEEECCSCSSSCCEEEEEEECSSSE-EEE---ECSSSS
T ss_pred ccCeEEEEeeCCCCCCEEEEEEEecCCE-EEE---EcCCCC
Confidence 5799999999999999999999976663 434 477544
No 40
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=74.42 E-value=6.9 Score=36.98 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=43.2
Q ss_pred cccceeEEEEecCCceEEEEecC----CCeEEE--EcCCceeeecC-CCCCeEEEEeCCCCCceEEEEeeeC
Q 018594 258 YNKQKGVVRKVIDKYVGEIEMLE----KKHVLR--VDQDELETVIP-QIGGLVRIVNGAYRGSNARLLGVDT 322 (353)
Q Consensus 258 yYk~KgvV~~V~d~~~c~V~l~d----~g~~l~--vdq~~LETVIP-~~G~~V~IV~G~~RG~~g~L~siD~ 322 (353)
+...+|+..=+.-.. .++..+| .++.+. ++...+--.|| ..|..+||+.|.+.|.+|++.+|..
T Consensus 130 ~~~~~G~pql~tHDG-rti~~~dp~ik~~Dtv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~ 200 (261)
T 3u5c_E 130 QLGKKGVPYVVTHDG-RTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKER 200 (261)
T ss_dssp EECGGGCEEEEETTT-EEEESCCSSCCTTCEEEECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEEC
T ss_pred EEecCCceEEEEecc-eEEecCCCCcccCCEEEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEE
Confidence 444556655554322 3344333 366665 44445556666 8899999999999999999999975
No 41
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.94 E-value=10 Score=29.12 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=37.4
Q ss_pred CCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCce
Q 018594 242 EGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDEL 292 (353)
Q Consensus 242 ~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~L 292 (353)
.+=.|+|. .|.|=+..|+|+++.+. .|.|+|-....+|.|+-++|
T Consensus 20 iGktV~I~-----kGpyKG~~GiVkd~t~~-~~RVELhs~~K~VtV~r~~l 64 (71)
T 2e70_A 20 IGQTVRIS-----QGPYKGYIGVVKDATES-TARVELHSTCQTISVDRQRL 64 (71)
T ss_dssp TTSEEEEC-----SSTTTTCEEEEEEECSS-CEEEEESSSCCEEEECTTTE
T ss_pred CCCEEEEe-----ccCCCCeEEEEEECCCC-eEEEEecCCceEEEEEhhhc
Confidence 35578886 56787889999999885 89999877788899999998
No 42
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=71.17 E-value=4.7 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=25.1
Q ss_pred cHHHHHHHhccccc-EEEeecCceeEEEeecCC
Q 018594 61 TLTEFVKYLGRTGK-CKVEETPKGWFITYIDRD 92 (353)
Q Consensus 61 tLt~Fvk~Lgr~G~-c~vdetekGw~I~yId~~ 92 (353)
-+..|+.||-..|+ |+|.+++.|=+|...|-+
T Consensus 14 ~aqaf~dyL~~~~I~~~v~~~~~~~~Lwl~d~~ 46 (70)
T 2gqc_A 14 DLAGFVGLLRRLNVPHRVSEESGQQVLWVPDER 46 (70)
T ss_dssp TGGGHHHHHHTTTCCSEEEEETTEEEEECCCSS
T ss_pred HHHHHHHHHHHCCCcEEEEECCCceEEEEcCHH
Confidence 35689999999998 999988877566555543
No 43
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=70.25 E-value=9.9 Score=29.18 Aligned_cols=53 Identities=26% Similarity=0.356 Sum_probs=40.6
Q ss_pred CCCCeEEEEeCC--CCCceEEEEeeeCC--ccEEEEEEeccccCCceeeeccccccc
Q 018594 298 QIGGLVRIVNGA--YRGSNARLLGVDTD--KFCAQVKIEKGVYDGRVLNAIDYEDIC 350 (353)
Q Consensus 298 ~~G~~V~IV~G~--~RG~~g~L~siD~~--~~~a~V~l~~g~~~g~~v~~l~yedic 350 (353)
.+|.+|+|++-+ |-+.+|++.++|.+ ++-|.|.++.+++.|-.-.++.+++|-
T Consensus 3 ~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe 59 (70)
T 1qp2_A 3 QRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELV 59 (70)
T ss_dssp CTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEE
T ss_pred CCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHee
Confidence 469999999765 68999999999986 366899999888877433346666553
No 44
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=70.07 E-value=12 Score=28.54 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=37.9
Q ss_pred cccCCcccccceeEEEEecC-CceEEEEecCCCeEEEEcCCceeeecCC
Q 018594 251 KALADKGYNKQKGVVRKVID-KYVGEIEMLEKKHVLRVDQDELETVIPQ 298 (353)
Q Consensus 251 K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~g~~l~vdq~~LETVIP~ 298 (353)
+.-.||+||. ++|.+|.. ...|.|...|-|..-.|+.++|-++-|.
T Consensus 19 ~~s~Dg~wYR--A~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 19 LYWEDNKFYR--AEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp ECTTTCCEEE--EEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred EECCCCCEEE--EEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence 3345789987 78999976 4689999999999999999999887664
No 45
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=69.19 E-value=12 Score=27.38 Aligned_cols=51 Identities=10% Similarity=-0.044 Sum_probs=38.1
Q ss_pred cCCcEEEEeecccCCcccccceeEEEEecC-CceEEEEecCCCeEEEEcCCceeee
Q 018594 241 CEGIIVKVMSKALADKGYNKQKGVVRKVID-KYVGEIEMLEKKHVLRVDQDELETV 295 (353)
Q Consensus 241 ~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~g~~l~vdq~~LETV 295 (353)
.+|-.+. -+.-.||+||. ++|.+|.. ...|.|...|=|..-.|+-+.|-++
T Consensus 10 ~vGd~c~--A~~s~Dg~wYr--A~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 10 KVGDKCM--AVWSEDGQCYE--AEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 61 (64)
T ss_dssp CTTCEEE--EECTTTSSEEE--EEEEEEETTTTEEEEEETTTTEEEEEEGGGEECC
T ss_pred CCCCEEE--EEECCCCCEEE--EEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeC
Confidence 3444443 34446889997 79999986 4689999999899888888888653
No 46
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=69.07 E-value=9.6 Score=30.11 Aligned_cols=56 Identities=9% Similarity=-0.038 Sum_probs=41.6
Q ss_pred CcccCCcEEEEeecccCCcccccceeEEEEecC-CceEEEEecCCCeEEEEcCCceeeecCC
Q 018594 238 YWLCEGIIVKVMSKALADKGYNKQKGVVRKVID-KYVGEIEMLEKKHVLRVDQDELETVIPQ 298 (353)
Q Consensus 238 ~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~g~~l~vdq~~LETVIP~ 298 (353)
.| .+|-.|- -+.-.||.||. |+|.+|.. ...|.|...|-|..-.|+.++|-++-|.
T Consensus 10 ~~-kvGd~C~--A~ys~Dg~wYr--A~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~ 66 (88)
T 1g5v_A 10 QW-KVGDKCS--AIWSEDGCIYP--ATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 66 (88)
T ss_dssp CC-CSSCEEE--EECTTTCCEEE--EEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC--
T ss_pred CC-CCCCEEE--EEECCCCCEEE--EEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCChh
Confidence 56 4455443 34456889997 79999975 4689999999999999999998876554
No 47
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=61.94 E-value=72 Score=26.89 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=51.4
Q ss_pred EEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecC-CCCCeEEEEeCCCCCceEEEEeeeCCc
Q 018594 247 KVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIP-QIGGLVRIVNGAYRGSNARLLGVDTDK 324 (353)
Q Consensus 247 KIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP-~~G~~V~IV~G~~RG~~g~L~siD~~~ 324 (353)
||..+--.+|.||- |.|.....+....|..+| |....|..+++=-.=| .+|-.|.-+.+..-+..|+++....+.
T Consensus 10 rV~AkWsdn~~yYp--G~V~~~~~~~ky~V~FdD-g~~~~v~~k~iiv~d~ip~g~~V~A~teddy~~~GiI~~~k~~~ 85 (123)
T 2g3r_A 10 RVVAKWSSNGYFYS--GKITRDVGAGKYKLLFDD-GYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKES 85 (123)
T ss_dssp EEEEECTTTCCEEE--EEEEEEEETTEEEEEETT-SCEEEEEGGGEECCSSCCTTCEEEEECTTSCEEEEEEEEEEEET
T ss_pred EEEEEeccCCcCcc--cEEEEeccCCeEEEEEcC-CCeeEeecceEEEecccCCCcEEEEeecCccccceEEEEEecCC
Confidence 45556566766776 888776666677787765 6666655555432114 369999999999999999999765443
No 48
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=61.39 E-value=44 Score=29.13 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecC
Q 018594 218 ALEELMREEEKVKEKMNRKDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIP 297 (353)
Q Consensus 218 aLdeime~ee~kk~~~~r~~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP 297 (353)
.|++||+.=..--........=+.+|-.+=. +.-.||.+|- |.|.++.+...+.|...|-|....|+.+.|-...|
T Consensus 44 ~l~~L~~~l~~~~~~~~~~~~~~~~G~~c~a--~~~~d~~wyR--a~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 44 KLDDLNQSLADYCAQKPPNGFKAEIGRPCCA--FFSGDGNWYR--ALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILP 119 (201)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCCCTTCEEEE--EETTTTEEEE--EEEEEECTTSCEEEEETTTCCEEEECGGGEEECCG
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCEEEE--EECCCCeEEE--EEEEEECCCCeEEEEEEccCCEEEEEHHHhccChH
Confidence 5777774422211212222222345554422 3345778885 78999987778999999999988888888876554
No 49
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=60.39 E-value=16 Score=25.59 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=32.6
Q ss_pred cccCCcccccceeEEEEecC-CceEEEEecCCCeEEEEcCCceeee
Q 018594 251 KALADKGYNKQKGVVRKVID-KYVGEIEMLEKKHVLRVDQDELETV 295 (353)
Q Consensus 251 K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~g~~l~vdq~~LETV 295 (353)
+.-.||.+|- |+|.++.. +..|.|...|=|..-.|+.++|-++
T Consensus 11 ~~s~Dg~wYr--A~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 11 LYWEDNKFYR--AEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 54 (54)
T ss_dssp EETTTTEEEE--EEEEEC--CCSEEEEEETTTCCEEEEEGGGEECC
T ss_pred EECCCCCEEE--EEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEEC
Confidence 3346888887 79999964 4689999999899888888887653
No 50
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.77 E-value=28 Score=27.54 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=43.4
Q ss_pred CCCcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecCC
Q 018594 236 KDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQ 298 (353)
Q Consensus 236 ~~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP~ 298 (353)
+-.| ..|-.|-+.-. .++++|- |.|..|.+...+.|.+.|-|.+..|+.+.|-+.-|+
T Consensus 19 ~~~~-k~g~~vaak~~--d~n~WyR--akV~~v~~~~~veVl~~DyGn~~~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 19 PVKW-ENDMHCAVKIQ--DKNQWRR--GQIIRMVTDTLVEVLLYDVGVELVVNVDCLRKLEEN 76 (85)
T ss_dssp CCCC-CSSCEEEEECS--SSCCEEE--EEEEEECSSSEEEEECTTTCCEEEEETTTEEECCHH
T ss_pred ccCc-cCCCEEEEEeC--CCCeEEE--EEEEEecCCCeEEEEEEccCCEEEEEccccccCCHH
Confidence 4566 55656544322 2336665 899999987789999999999999999999887664
No 51
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=59.74 E-value=17 Score=29.95 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=46.4
Q ss_pred eeEEEEecCCceEEEEecCCCeEE-EEcCCceeeecCCCCCeEEEEeCCCCCceEEEEeeeCCc
Q 018594 262 KGVVRKVIDKYVGEIEMLEKKHVL-RVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDK 324 (353)
Q Consensus 262 KgvV~~V~d~~~c~V~l~d~g~~l-~vdq~~LETVIP~~G~~V~IV~G~~RG~~g~L~siD~~~ 324 (353)
.|+|....+...+.|.+.++..++ .+...+--.+-|.+|+.|.|-.-+|-...|.++.+-..+
T Consensus 35 ~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~ 98 (117)
T 2oqk_A 35 YGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYTPD 98 (117)
T ss_dssp EEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEECCHH
T ss_pred EEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEechH
Confidence 588999888678888887633333 577776667778899999998776766778777775543
No 52
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=59.61 E-value=14 Score=29.59 Aligned_cols=50 Identities=20% Similarity=0.070 Sum_probs=33.8
Q ss_pred cccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecC--CCeEE-EEcCCcee
Q 018594 239 WLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLE--KKHVL-RVDQDELE 293 (353)
Q Consensus 239 WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d--~g~~l-~vdq~~LE 293 (353)
.+.+|=+|.+. .|+|.+++++|.+++|...+-|.-++ ++... .+.+.||.
T Consensus 3 ~v~~GrVv~~~-----~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~ 55 (96)
T 2joy_A 3 AIEVGRICVKV-----KGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLE 55 (96)
T ss_dssp SSSTTEEEECS-----SSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCE
T ss_pred ccccCEEEEEe-----ecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEE
Confidence 45678787654 56899999999999987666665443 12222 46677764
No 53
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=57.90 E-value=1.2 Score=37.34 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=27.7
Q ss_pred cccccHHHHH-HHhcccccEEEeecCceeEEEeecCChHHH
Q 018594 57 TRWATLTEFV-KYLGRTGKCKVEETPKGWFITYIDRDSETL 96 (353)
Q Consensus 57 T~W~tLt~Fv-k~Lgr~G~c~vdetekGw~I~yId~~pe~~ 96 (353)
|.|.||+.|= -.||+.|...+-..+.|.| ||||||...
T Consensus 26 t~~~TL~~~p~S~L~~~~~~~~~~~~~g~~--FiDRdp~~F 64 (124)
T 1s1g_A 26 TWRTTLERYPDTLLGSTEKEFFFNEDTKEY--FFDRDPEVF 64 (124)
T ss_dssp EEHHHHTTSTTSSTTSSGGGGTBCSSSCSE--EECSCHHHH
T ss_pred EeHHHHhcCCCceecccCCcccccCCCCcE--EEcCChHHH
Confidence 7788887762 3578877654455678888 699999865
No 54
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=57.70 E-value=24 Score=26.13 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=30.0
Q ss_pred CcccCCcEEEEeecccCCcccccceeEEEEecC-CceEEEEecCCCeEEEEcCCce
Q 018594 238 YWLCEGIIVKVMSKALADKGYNKQKGVVRKVID-KYVGEIEMLEKKHVLRVDQDEL 292 (353)
Q Consensus 238 ~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~g~~l~vdq~~L 292 (353)
.|.-.+..++ -.||+||. |.|+.|.. +.+|.|+..| +...-+.-..|
T Consensus 4 f~~GedVLar-----wsDG~fYl--GtI~~V~~~~~~clV~F~D-~s~~W~~~kdi 51 (58)
T 4hcz_A 4 LWEGQDVLAR-----WTDGLLYL--GTIKKVDSAREVCLVQFED-DSQFLVLWKDI 51 (58)
T ss_dssp CCTTCEEEEE-----CTTSCEEE--EEEEEEETTTTEEEEEETT-SCEEEEEGGGE
T ss_pred cccCCEEEEE-----ecCCCEEe--EEEEEEecCCCEEEEEEcC-CCeEEEEhHHc
Confidence 3444455554 34789998 88999965 4499999876 34333433343
No 55
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=57.60 E-value=7.8 Score=33.18 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=28.3
Q ss_pred CCCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEecccc
Q 018594 297 PQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVY 336 (353)
Q Consensus 297 P~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~ 336 (353)
..+|.-|+|..|.|.|..+.+++|-.+++ |.| .||.
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD~~r-vLV---dG~~ 42 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVDQNR-ALV---DAPD 42 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECSSSE-EEE---EETT
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcCCCe-EEE---eCCC
Confidence 45799999999999999999999976663 434 4653
No 56
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=56.86 E-value=35 Score=24.80 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=38.7
Q ss_pred ecCCCCCeEEEEe-CCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccccc
Q 018594 295 VIPQIGGLVRIVN-GAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352 (353)
Q Consensus 295 VIP~~G~~V~IV~-G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl 352 (353)
..|++|+.++... ..-+--.|++.+++.++..+.|.... -|. .+.+++.+|.-+
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvd---YGn-~e~V~~~~Lrpl 61 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAG---YGN-AEVTPLLNLKPV 61 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETT---TTE-EEEEEGGGEECC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEe---cCC-EEEEeHHHcEeC
Confidence 3578999999985 34456779999999876678887764 244 345788887543
No 57
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=55.95 E-value=17 Score=31.22 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=27.1
Q ss_pred cccCCcEEEEeecccCCcccccceeEEEEecCCceEEEE
Q 018594 239 WLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIE 277 (353)
Q Consensus 239 WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~ 277 (353)
.+.+|=+|.|. .|+|.+++++|++|+|...+-|-
T Consensus 14 fve~GrVV~i~-----~Gr~aGk~avIV~iiD~~rVLVD 47 (138)
T 3izc_N 14 LVEVGRVVLIK-----KGQSAGKLAAIVEIIDQKKVLID 47 (138)
T ss_dssp CSSTTEEEECC-----SCSSSCCEEEEEEECSSSEEEEE
T ss_pred hcccCeEEEEe-----eCCCCCCEEEEEEEecCCEEEEE
Confidence 46677777653 56899999999999998777773
No 58
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=55.61 E-value=15 Score=31.75 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=22.7
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCC
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTD 323 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~ 323 (353)
.+|.-|+|+.|.|+|..+.++.+-.+
T Consensus 6 kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 6 KYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred cCCeEEEEecCCcCCCEEEEEEecCC
Confidence 46888889999999999999988655
No 59
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=54.85 E-value=24 Score=30.13 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=26.5
Q ss_pred cccCCcEEEEeecccCCcccccceeEEEEecCCceEEE
Q 018594 239 WLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEI 276 (353)
Q Consensus 239 WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V 276 (353)
.+.+|=+|.|. .|+|.+++++|++|+|...|-|
T Consensus 6 fvevGRVV~i~-----~Gr~aGk~avIV~iiD~~rvLV 38 (134)
T 3iz5_N 6 FVEIGRVALVN-----YGKDYGRLVVIVDVVDQNRALV 38 (134)
T ss_dssp SCCSSEEEECS-----CCSSSCCEEEEEEECSSSEEEE
T ss_pred ccccCeEEEEe-----eCCCCCCEEEEEEEcCCCeEEE
Confidence 45677777653 5689999999999999877777
No 60
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=54.61 E-value=41 Score=24.92 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=37.0
Q ss_pred eeEEEEecCCceEEEEecCCCeEE-EEcCCcee-eecCCCCCeEEEEeCCCCCceEEE
Q 018594 262 KGVVRKVIDKYVGEIEMLEKKHVL-RVDQDELE-TVIPQIGGLVRIVNGAYRGSNARL 317 (353)
Q Consensus 262 KgvV~~V~d~~~c~V~l~d~g~~l-~vdq~~LE-TVIP~~G~~V~IV~G~~RG~~g~L 317 (353)
.|+|....+.....|++.++...+ .+...+-- .+-|.+|+.|.|-.-+|-...|.+
T Consensus 9 ~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I 66 (71)
T 1ah9_A 9 QGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRI 66 (71)
T ss_dssp CEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEE
T ss_pred EEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEE
Confidence 578888877557778776533333 67777764 477889999987644444445544
No 61
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=54.53 E-value=32 Score=26.18 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=36.5
Q ss_pred CceeeecC-------CCCCeEEEEe-CCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccccc
Q 018594 290 DELETVIP-------QIGGLVRIVN-GAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352 (353)
Q Consensus 290 ~~LETVIP-------~~G~~V~IV~-G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl 352 (353)
.-||.+.| ++|+.++... ..-.--.|++++++.+...+.|.... -|. .+.+++.+|..+
T Consensus 4 ~~l~~~~~~e~~~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvD---YGN-~e~V~~~~Lr~l 70 (77)
T 3pnw_C 4 KILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFID---YGN-YEEVLLSNIKPI 70 (77)
T ss_dssp -------CHHHHTTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETT---TCC-EEEEEGGGEECC
T ss_pred cccccccchhhcCCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEc---CCC-eEEEeHHHeEEC
Confidence 44666665 5799998885 34455679999998876667776654 244 445888888654
No 62
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=53.48 E-value=44 Score=24.70 Aligned_cols=50 Identities=16% Similarity=0.013 Sum_probs=39.2
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccccc
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl 352 (353)
..|..|++-.-.-+=-.|++++++....++.|+...+ ... .+.+.||.+.
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~----s~~-W~~~kdi~~~ 54 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDD----SQF-LVLWKDISPA 54 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTS----CEE-EEEGGGEEEC
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCC----CeE-EEEhHHcccc
Confidence 4688888876666667899999999999999999863 333 5788888765
No 63
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=53.19 E-value=19 Score=27.55 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCCcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCC
Q 018594 236 KDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEK 281 (353)
Q Consensus 236 ~~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~ 281 (353)
..+|+..+..+|. .||.||. |.|++.. +.+|-|...|.
T Consensus 14 ~~~~~geDVL~rw-----~DG~fYL--GtIVd~~-~~~ClV~FeD~ 51 (69)
T 2xk0_A 14 VTYALQEDVFIKC-----NDGRFYL--GTIIDQT-SDQYLIRFDDQ 51 (69)
T ss_dssp CCCCTTCEEEEEC-----TTSCEEE--EEEEEEC-SSCEEEEETTC
T ss_pred cccccCCeEEEEe-----cCCCEEE--EEEEecC-CceEEEEecCC
Confidence 4688888888874 4789998 7777754 45899998764
No 64
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=52.87 E-value=47 Score=29.58 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecC
Q 018594 218 ALEELMREEEKVKEKMNRKDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIP 297 (353)
Q Consensus 218 aLdeime~ee~kk~~~~r~~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP 297 (353)
.|++||..=..--........-+.+|-.+=. +...||.+|- |.|.++.+...+.|...|-|....|+.+.|-...|
T Consensus 44 ~L~~L~~~l~~~~~~~~~~~~~~~~G~~c~a--~~~~d~~WyR--a~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~~ 119 (226)
T 4b9x_A 44 KLDDLNQSLADYCAQKPPNGFKAEIGRPCCA--FFSGDGNWYR--ALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILP 119 (226)
T ss_dssp HHHHHHHHHHHHTSSSCC--CCCCTTCEEEE--EETTTTEEEE--EEEEEECSSSEEEEECTTTCCEEEEEGGGEECCCG
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCEEEE--EECCCCeEEE--EEEEEECCCCeEEEEEEecCCEEEEEHHHhccChH
Confidence 5677764322211111122222345555422 3345778885 78999987778999999999988888888876554
No 65
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=52.03 E-value=49 Score=23.34 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=35.9
Q ss_pred ccCCcEEEEeecccCCcccccceeEEEEecC-CceEEEEecCCCe--EEEEcCCceee
Q 018594 240 LCEGIIVKVMSKALADKGYNKQKGVVRKVID-KYVGEIEMLEKKH--VLRVDQDELET 294 (353)
Q Consensus 240 L~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~g~--~l~vdq~~LET 294 (353)
+.+|=.|+|+ +|-|-+..|.|.+|.. +..+.|.+.--|+ .+.++-+++|.
T Consensus 5 ~~~Gd~V~V~-----~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek 57 (58)
T 1nz9_A 5 FREGDQVRVV-----SGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57 (58)
T ss_dssp CCTTCEEEEC-----SGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred cCCCCEEEEe-----ecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEE
Confidence 4567789998 6678889999999965 4577665543344 45788777764
No 66
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.61 E-value=12 Score=29.32 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=24.4
Q ss_pred CCCCCeEEEEeCCCCCceEEEEeeeCCcc
Q 018594 297 PQIGGLVRIVNGAYRGSNARLLGVDTDKF 325 (353)
Q Consensus 297 P~~G~~V~IV~G~~RG~~g~L~siD~~~~ 325 (353)
..+|.-|.++.|.|+|..+.++++-.+++
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~ 32 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIIDKNF 32 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECSSSC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcCCCE
Confidence 46799999999999999999999754553
No 67
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=50.42 E-value=16 Score=28.64 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=30.3
Q ss_pred CCCcccCCcEEEEeecccCCcccccceeEEEEecC-CceEEEEecCC
Q 018594 236 KDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVID-KYVGEIEMLEK 281 (353)
Q Consensus 236 ~~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~ 281 (353)
..+|+..+..+| ..||.||. |.|+.|.. +..|-|...|.
T Consensus 25 ~~f~eGeDVLar-----wsDGlfYL--GTI~kV~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 25 PRLWEGQDVLAR-----WTDGLLYL--GTIKKVDSAREVCLVQFEDD 64 (79)
T ss_dssp CCCCTTCEEEBC-----CTTSCCCE--EEEEEEETTTTEEEEEETTS
T ss_pred ceeccCCEEEEE-----ecCCCEEe--EEEEEeccCCCEEEEEEcCC
Confidence 467877777765 45899998 88998865 66899998764
No 68
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=50.03 E-value=30 Score=26.35 Aligned_cols=53 Identities=8% Similarity=0.067 Sum_probs=38.5
Q ss_pred cCCcEEEEeecccCCcccccceeEEEEecC-CceEEEEecCCCeEEEEcCCceeeecC
Q 018594 241 CEGIIVKVMSKALADKGYNKQKGVVRKVID-KYVGEIEMLEKKHVLRVDQDELETVIP 297 (353)
Q Consensus 241 ~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~g~~l~vdq~~LETVIP 297 (353)
.+|-.+- -+.-.||.+|. |+|.+|.. +..|.|...|=|..-.|+.++|-++-+
T Consensus 19 kvGd~C~--A~ys~Dg~wYR--A~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 19 KPGDECF--ALYWEDNKFYR--AEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQT 72 (77)
T ss_dssp CTTCEEE--EEETTTTEEEE--EEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC--
T ss_pred CcCCEEE--EEECCCCCEEE--EEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECCh
Confidence 3444443 34446889987 79999975 458999999999998999999987544
No 69
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=49.34 E-value=13 Score=29.76 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCCCCeEEEEeCCCCCceEEEEeeeCCc
Q 018594 297 PQIGGLVRIVNGAYRGSNARLLGVDTDK 324 (353)
Q Consensus 297 P~~G~~V~IV~G~~RG~~g~L~siD~~~ 324 (353)
..+|.-|.++.|.|+|..+.++.+-.++
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~ 31 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIIDDN 31 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECSSS
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeCCC
Confidence 3578889999999999999999995444
No 70
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=48.71 E-value=53 Score=25.79 Aligned_cols=53 Identities=11% Similarity=0.007 Sum_probs=38.2
Q ss_pred cCCCCCeEEEEe-CCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccccc
Q 018594 296 IPQIGGLVRIVN-GAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352 (353)
Q Consensus 296 IP~~G~~V~IV~-G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl 352 (353)
.|++|+.++... +.-.--.|++.+++.....+.|.... -|. .+.+++.+|.-+
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiD---YGN-~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTG---YGN-REEQNLSDLLSP 63 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETT---TCC-EEEEEGGGCBCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEec---CCC-EEEEcHHHcccC
Confidence 578999999995 34566789999999865667777653 244 345888887643
No 71
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=48.43 E-value=16 Score=30.88 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEecccc
Q 018594 299 IGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVY 336 (353)
Q Consensus 299 ~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~ 336 (353)
+|.-|+|..|.|.|..+++++|-..+. |.| .||.
T Consensus 9 vGRVv~i~~G~~aGklavIVdIID~nr-vLV---dGp~ 42 (126)
T 4a18_F 9 VGRVVYINYGADKGKLAVIVNIINQNR-ILI---DGEH 42 (126)
T ss_dssp TTEEEEECSSTTTTEEEEEEEEETTTE-EEE---EETT
T ss_pred cceEEEEccCCccCCEEEEEEEecCCe-EEE---eCCC
Confidence 588888889999999999999966653 433 3663
No 72
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=48.12 E-value=38 Score=28.60 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=32.8
Q ss_pred ccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEE--EEcCCceee
Q 018594 240 LCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVL--RVDQDELET 294 (353)
Q Consensus 240 L~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l--~vdq~~LET 294 (353)
+.+|=+|-|. .|.|.+++++|++|+|...|-|--++ +- .++-.||+.
T Consensus 7 vevGRVv~i~-----~G~~aGklavIVdIID~nrvLVdGp~---V~Rq~~n~k~l~L 55 (126)
T 4a18_F 7 VQVGRVVYIN-----YGADKGKLAVIVNIINQNRILIDGEH---IVRQVIPIRRVHL 55 (126)
T ss_dssp EETTEEEEEC-----SSTTTTEEEEEEEEETTTEEEEEETT---EEEEEEEGGGEEE
T ss_pred eecceEEEEc-----cCCccCCEEEEEEEecCCeEEEeCCC---cccceeeccceEE
Confidence 4566666553 56899999999999998888774442 22 366666654
No 73
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=47.65 E-value=46 Score=25.72 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=32.0
Q ss_pred CCCCeEEEEeCC--CCCceEEEEeeeCC---ccEEEEEEecccc
Q 018594 298 QIGGLVRIVNGA--YRGSNARLLGVDTD---KFCAQVKIEKGVY 336 (353)
Q Consensus 298 ~~G~~V~IV~G~--~RG~~g~L~siD~~---~~~a~V~l~~g~~ 336 (353)
+.|++|+|++-+ +-..+|++.++|.+ ++-++|+++.-.+
T Consensus 2 ~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdkVNY 45 (75)
T 1jb0_E 2 QRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNY 45 (75)
T ss_dssp CTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSSCCS
T ss_pred CCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEeeecc
Confidence 358999999765 47789999999997 7889999886554
No 74
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=53.16 E-value=3.9 Score=32.14 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=32.0
Q ss_pred CcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeee
Q 018594 255 DKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETV 295 (353)
Q Consensus 255 dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETV 295 (353)
||.||. |.|.+|.+..+|.|...| |..-.|..++|-++
T Consensus 19 Dg~wY~--A~I~~v~~~~~y~V~F~D-Gn~E~V~~s~LrPl 56 (81)
T 2ldm_A 19 DSRFYP--AKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAF 56 (81)
Confidence 789997 789999775689999988 88888988888765
No 75
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=46.16 E-value=54 Score=27.47 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=41.6
Q ss_pred ccCCcEEEEeecccCCcccccceeEEEEecC-CceEEEEecCCCe--EEEEcCCceeee
Q 018594 240 LCEGIIVKVMSKALADKGYNKQKGVVRKVID-KYVGEIEMLEKKH--VLRVDQDELETV 295 (353)
Q Consensus 240 L~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~g~--~l~vdq~~LETV 295 (353)
+.+|=.|+|+ +|.|-+-.|+|.+|.. +..+.|.+..-|+ -+.|+-+++|.+
T Consensus 92 ~~~Gd~VrI~-----~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i 145 (152)
T 3p8b_B 92 LEPGDLVEVI-----AGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLI 145 (152)
T ss_dssp CCTTCEEEEC-----SSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEE
T ss_pred CCCCCEEEEe-----eecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEe
Confidence 5678889998 5788889999999965 5678888877776 468999999876
No 76
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=45.78 E-value=1e+02 Score=27.40 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=47.0
Q ss_pred ChHHHHHHH-HHHHHhhcCC--CCCcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCcee
Q 018594 217 SALEELMRE-EEKVKEKMNR--KDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELE 293 (353)
Q Consensus 217 saLdeime~-ee~kk~~~~r--~~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LE 293 (353)
..|++||.. .+.-...... ...| .+|-.+-.. .- ||.+|- |.|.+|.+..++.|...|-|....|+.+.|-
T Consensus 41 ~~l~~l~~~l~~~~~~~~~~~~~~~~-~~G~~c~a~--~~-d~~wyR--a~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr 114 (246)
T 2hqx_A 41 TQFQKLMENMRNDIASHPPVEGSYAP-RRGEFCIAK--FV-DGEWYR--ARVEKVESPAKIHVFYIDYGNREVLPSTRLG 114 (246)
T ss_dssp CHHHHHHHHHHHHHHHSCCCTTTCCC-CTTCEEEEE--CT-TSCEEE--EEEEEEEETTEEEEEETTTCCEEEECGGGEE
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCC-CCCCEEEEE--cC-CCCEEE--EEEEEEcCCCeEEEEEEeCCCeEEEeHHHhh
Confidence 467888753 3322221111 2344 445444333 22 678876 7899998656999999999998888887777
Q ss_pred eecC
Q 018594 294 TVIP 297 (353)
Q Consensus 294 TVIP 297 (353)
++.|
T Consensus 115 ~l~~ 118 (246)
T 2hqx_A 115 TLSP 118 (246)
T ss_dssp CCCG
T ss_pred cCCH
Confidence 6543
No 77
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=44.03 E-value=43 Score=25.95 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=39.1
Q ss_pred cceeEEEEecCCceEEEEecCCCeE-E-EEcCCcee-eecCCCCCeEEEEeCCCCCceEEEE
Q 018594 260 KQKGVVRKVIDKYVGEIEMLEKKHV-L-RVDQDELE-TVIPQIGGLVRIVNGAYRGSNARLL 318 (353)
Q Consensus 260 k~KgvV~~V~d~~~c~V~l~d~g~~-l-~vdq~~LE-TVIP~~G~~V~IV~G~~RG~~g~L~ 318 (353)
.-.|+|..........|++.+ |.. + .+.-.+-- -+-|.+|+.|.|-.-+|--..|.++
T Consensus 15 e~~G~Vik~l~n~~f~V~l~n-G~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELEN-GHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETT-SCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCC-CCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 346888888866688888865 533 3 56655544 4458889999887766765566554
No 78
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=43.51 E-value=58 Score=24.61 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=37.3
Q ss_pred cCCCCCeEEEEe-CCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccccc
Q 018594 296 IPQIGGLVRIVN-GAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352 (353)
Q Consensus 296 IP~~G~~V~IV~-G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl 352 (353)
.|++|+.++... ..-.--.|++++++.+...+.|.... -|. .+.+++.+|..+
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiD---YGN-~e~V~~~~Lr~l 62 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTD---YGN-YEEVLLSNIKPV 62 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETT---TTE-EEEEEGGGEEEC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEc---CCC-eEEEcHHHeEeC
Confidence 478999988885 23455788999998766667777654 244 446888887654
No 79
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.65 E-value=50 Score=23.77 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=36.2
Q ss_pred ccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecC--CCeEEEEcCCcee
Q 018594 240 LCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLE--KKHVLRVDQDELE 293 (353)
Q Consensus 240 L~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d--~g~~l~vdq~~LE 293 (353)
+.+|=.|+|+ +|-|-+-.|+|.+|... .+.|.+.. -...+.++-++|+
T Consensus 8 f~~GD~V~V~-----~Gpf~g~~G~V~evd~e-~v~V~v~~fg~~tpvel~~~qv~ 57 (59)
T 2e6z_A 8 FQPGDNVEVC-----EGELINLQGKILSVDGN-KITIMPKHEDLKDMLEFPAQELR 57 (59)
T ss_dssp CCTTSEEEEC-----SSTTTTCEEEECCCBTT-EEEEEECCSSCCSCEEEETTTEE
T ss_pred CCCCCEEEEe-----ecCCCCCEEEEEEEeCC-EEEEEEEecCCCceEEEcHHHEE
Confidence 4778889998 56788899999999775 78777752 2346677777775
No 80
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.22 E-value=58 Score=24.76 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=36.8
Q ss_pred ecCCCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccccc
Q 018594 295 VIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352 (353)
Q Consensus 295 VIP~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl 352 (353)
..|++|+.|+-..-.-.=-.|++.+++.+ ..++|....+ ..+.+++.+|..+
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~~-~~~~V~f~Dy-----n~e~v~~~~lrpl 59 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKE-GTFTVQFYDG-----VIRCLKRMHIKAM 59 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTT-SSEEEEETTS-----CEEEECGGGEECC
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCC-CEEEEEEecC-----CeEEecHHHCeeC
Confidence 45789999999965445578999999875 4567777753 2445777777543
No 81
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=40.82 E-value=17 Score=28.65 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.9
Q ss_pred HHHhcccccEEEeecCceeEEEe
Q 018594 66 VKYLGRTGKCKVEETPKGWFITY 88 (353)
Q Consensus 66 vk~Lgr~G~c~vdetekGw~I~y 88 (353)
+=||.|||++.+++.+.-|||..
T Consensus 43 IGWLaREdKI~~~~~~~~l~v~L 65 (82)
T 2l02_A 43 VGWLARENKVVIERKNGLIEIYN 65 (82)
T ss_dssp HHHHHTTTSEEEEEETTEEEEEE
T ss_pred HHHHhccCceeEEeeCCEEEEEE
Confidence 67999999999999999999974
No 82
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=40.77 E-value=53 Score=27.40 Aligned_cols=46 Identities=13% Similarity=0.373 Sum_probs=34.7
Q ss_pred CCcEEEEeecccCCcccccceeEEEEecC-CceEEEEecCC---CeEE-EEcCCce
Q 018594 242 EGIIVKVMSKALADKGYNKQKGVVRKVID-KYVGEIEMLEK---KHVL-RVDQDEL 292 (353)
Q Consensus 242 ~~IvVKIi~K~l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~---g~~l-~vdq~~L 292 (353)
+|=.|+|+ .|.|-++.|.+.++.. ++.|.|+|.++ ++.+ .++-++|
T Consensus 73 ~g~~V~Iv-----~G~~rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi 123 (127)
T 2ckk_A 73 PGKRILVL-----NGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDI 123 (127)
T ss_dssp TTCEEEEC-----SSTTTTCEEEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGE
T ss_pred CCCEEEEE-----ecccCCcEEEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHh
Confidence 46678998 4689999999999964 67999999863 5555 3665544
No 83
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=40.74 E-value=98 Score=26.56 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=47.8
Q ss_pred ceeEEEEecCCceEEEEecCCCeEE-EEcCCceeeecCCCCCeEEEEeCCCCCceEEEEeeeCC
Q 018594 261 QKGVVRKVIDKYVGEIEMLEKKHVL-RVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGVDTD 323 (353)
Q Consensus 261 ~KgvV~~V~d~~~c~V~l~d~g~~l-~vdq~~LETVIP~~G~~V~IV~G~~RG~~g~L~siD~~ 323 (353)
.-|+|..+.+...+.|.+.++-.+| .|+..+=-.|-=.+|+.|+|-.-+|--..|.++-+-..
T Consensus 33 ~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~ 96 (143)
T 1d7q_A 33 EYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp EEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeeccCCCCeEEEEEEeCH
Confidence 3468999999889999997644444 68877776666678999999888887777877777533
No 84
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=39.24 E-value=48 Score=28.64 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=47.8
Q ss_pred hHHHHHHH-HHHHHhhcCCCC-CcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeee
Q 018594 218 ALEELMRE-EEKVKEKMNRKD-YWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETV 295 (353)
Q Consensus 218 aLdeime~-ee~kk~~~~r~~-~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETV 295 (353)
.|++||+. .+.-........ +-+.+|-.|-.. .-.||.+|. |.|.+|.+ .++.|...|-|....|+.+.|-++
T Consensus 28 ~l~~l~~~l~~~~~~~~~~~~~~~~~~g~~c~a~--~~~d~~wyR--a~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l 102 (218)
T 2wac_A 28 KLESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQ--FTLDNQWYR--AKVERVQG-SNATVLYIDYGNKETLPTNRLAAL 102 (218)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTSCCCCTTCEEEEE--CTTTCCEEE--EEEEEEET-TEEEEEETTTCCEEEEEGGGEEEC
T ss_pred HHHHHHHHHHHHHhhCCCCCCCccCCcCCEEEEE--ECCCCeEEE--EEEEEecC-CeEEEEEEecCCeEEEchHHcccC
Confidence 47777753 332221122222 223455554333 224678876 89999988 699999999999988888888776
Q ss_pred cC
Q 018594 296 IP 297 (353)
Q Consensus 296 IP 297 (353)
.|
T Consensus 103 ~~ 104 (218)
T 2wac_A 103 PP 104 (218)
T ss_dssp CG
T ss_pred Ch
Confidence 55
No 85
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=39.06 E-value=58 Score=24.66 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=22.7
Q ss_pred cCCcccccceeEEEEecC-CceEEEEecCC
Q 018594 253 LADKGYNKQKGVVRKVID-KYVGEIEMLEK 281 (353)
Q Consensus 253 l~dGkyYk~KgvV~~V~d-~~~c~V~l~d~ 281 (353)
..||.||- |.|+.|.. ..+|.|+..|+
T Consensus 24 wtDGl~Y~--gtI~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 24 WSDGLFYL--GTIKKINILKQSCFIIFEDS 51 (66)
T ss_dssp CTTSCEEE--EEEEEEETTTTEEEEEETTT
T ss_pred EccCcEEE--eEEEEEccCCcEEEEEEccC
Confidence 57999998 89999976 57999999763
No 86
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=37.14 E-value=12 Score=34.92 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.9
Q ss_pred eeecccccccHHHHHHHhccc
Q 018594 52 VHMNSTRWATLTEFVKYLGRT 72 (353)
Q Consensus 52 iHMNaT~W~tLt~Fvk~Lgr~ 72 (353)
-|||+--..+|..|++++|.-
T Consensus 7 ~HMN~DH~dal~~y~~~~~~~ 27 (259)
T 3gas_A 7 EHMNAHHVEDMKGLLKKFGQV 27 (259)
T ss_dssp HHHHHHCHHHHHHHHHHHHCC
T ss_pred HHHHHhhHHHHHHHHHHhCCC
Confidence 399999999999999999853
No 87
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.39 E-value=34 Score=26.66 Aligned_cols=50 Identities=26% Similarity=0.179 Sum_probs=31.2
Q ss_pred ccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCC-Ce-EEEEcCCceee
Q 018594 240 LCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEK-KH-VLRVDQDELET 294 (353)
Q Consensus 240 L~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~-g~-~l~vdq~~LET 294 (353)
+.+|=+|.+. .|+|.+++++|.+++|...+-|.-... +- .-.+...||+.
T Consensus 4 ~~~Grvv~~~-----~Gr~~Gk~~vIv~iiD~~~vlV~g~~~~~v~rk~kn~khl~l 55 (83)
T 3j21_5 4 IDVGRIAVVI-----AGRRAGQKVVVVDIIDKNFVLVTGAGLNKVKRRRMNIKHIEP 55 (83)
T ss_dssp CCTTEEEECS-----SSSSSCCCEEEEEECSSSCEEEECCTTTTCCCEEESCSSCEE
T ss_pred cccCEEEEEe-----ecCCCCCEEEEEEEcCCCEEEEECCccCccCCeEechHHEEE
Confidence 4566677553 568999999999999876665543321 11 11355566553
No 88
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E* 2wsf_E* 2o01_E* 3lw5_E*
Probab=35.05 E-value=6.2 Score=33.69 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=42.0
Q ss_pred eeecCCCCCeEEEEeCC--CCCceEEEEeeeCC---ccEEEEEEeccccCCceeeeccccccc
Q 018594 293 ETVIPQIGGLVRIVNGA--YRGSNARLLGVDTD---KFCAQVKIEKGVYDGRVLNAIDYEDIC 350 (353)
Q Consensus 293 ETVIP~~G~~V~IV~G~--~RG~~g~L~siD~~---~~~a~V~l~~g~~~g~~v~~l~yedic 350 (353)
.+|=|+.|.+|+|++-+ +-..+|++.+||.+ +|-++|+++.-.+.|-.-.++..+.|-
T Consensus 77 p~igp~RGskVrIlR~ESYWyn~vGtVvsVDqs~girYPVvVRF~KVNYaGvnTNNfA~dEle 139 (143)
T 2wsc_E 77 PPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVE 139 (143)
T ss_dssp --CCSCSSSCBCCCSSSSTTTTSCBBCCCCCCSSCCSCCCBCBCSCCCSSSCCCCBCCSSCCC
T ss_pred CCCCCCCCCEeEEccccceeecCcceEEEEecCCCccccEEEEeeeecccccccccccHHHHh
Confidence 34668999999999765 46789999999996 788999988766666333345555543
No 89
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=34.32 E-value=7.3 Score=33.16 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=33.7
Q ss_pred cccceeec------ccccccHHHHH-HHhcccccEEEeecCceeEEEeecCChHHH
Q 018594 48 DRHHVHMN------STRWATLTEFV-KYLGRTGKCKVEETPKGWFITYIDRDSETL 96 (353)
Q Consensus 48 dr~HiHMN------aT~W~tLt~Fv-k~Lgr~G~c~vdetekGw~I~yId~~pe~~ 96 (353)
.-+.|+.| .|.|.||+.|= -.||+.|...+-..+.|.|. |||||...
T Consensus 33 ~~~~V~LNVGG~~F~T~~~TL~~~P~S~L~~~~~~~~~~~~~g~yF--iDRdp~~F 86 (140)
T 2nz0_B 33 QDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYF--FDRDPEVF 86 (140)
T ss_dssp CCCEEEEEETTEEEEEEHHHHHTCTTSTTTSGGGGGSEETTTTEEE--ECSCHHHH
T ss_pred CCCEEEEEECCEEEEeeHHHHhcCCCeeecccCCcccccCCCCeEE--EeCCcHHH
Confidence 44567766 47788888763 36888776555567788774 89999865
No 90
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=34.25 E-value=43 Score=28.95 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=22.6
Q ss_pred cccCCcEEEEeecccCCcccccceeEEEEecCC
Q 018594 239 WLCEGIIVKVMSKALADKGYNKQKGVVRKVIDK 271 (353)
Q Consensus 239 WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~ 271 (353)
.+.||=+|=|. .|+|.++|+||++++|.
T Consensus 4 f~kpGrVvivl-----~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 4 FLKYGRVVILL-----QGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CCCTTEEEEEC-----SSTTTTCEEEEEEEESS
T ss_pred cccCCeEEEEe-----cCCcCCCEEEEEEecCC
Confidence 46778777553 56999999999999987
No 91
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=33.24 E-value=12 Score=29.95 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=22.6
Q ss_pred cccccHHHHH-HHhccc-----ccEEEeecCceeEEEeecCChHHH
Q 018594 57 TRWATLTEFV-KYLGRT-----GKCKVEETPKGWFITYIDRDSETL 96 (353)
Q Consensus 57 T~W~tLt~Fv-k~Lgr~-----G~c~vdetekGw~I~yId~~pe~~ 96 (353)
|.|.||+.|= -+|++- -.| .+..+.|+| ||||||...
T Consensus 19 t~~~TL~~~p~s~L~~~~~~~~~~~-~~~d~~~~~--fiDRdp~~F 61 (107)
T 3drz_A 19 TTRQTLCRDPKSFLYRLCQADPDLD-SDKDETGAY--LIDRDPTYF 61 (107)
T ss_dssp EEHHHHTSSTTSHHHHHHTTCGGGG-GGBCTTSCE--EECSCHHHH
T ss_pred ECHHHHhcCCCcchhHHHhcCCCCC-cCCCCCceE--EecCChHHH
Confidence 7788887642 123321 122 234478887 789999865
No 92
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=33.07 E-value=1.4e+02 Score=22.58 Aligned_cols=50 Identities=12% Similarity=-0.084 Sum_probs=37.9
Q ss_pred CCCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCceeeecccccccc
Q 018594 297 PQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICK 351 (353)
Q Consensus 297 P~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicK 351 (353)
-..|+.|+...-.-+=-.|++.+|+....++.|+...+ . ...+.+-||..
T Consensus 14 f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~----s-~~w~~~kdi~~ 63 (66)
T 2eqj_A 14 FEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDS----S-KSWVLWKDIQT 63 (66)
T ss_dssp SCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTT----E-EEEEETTTEEC
T ss_pred ccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccC----C-EEEEEeecccc
Confidence 35799998886555667899999999999999998853 2 33466666643
No 93
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=32.91 E-value=1.3e+02 Score=21.21 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=36.8
Q ss_pred CCCCCeEEEEe-CCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccccc
Q 018594 297 PQIGGLVRIVN-GAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352 (353)
Q Consensus 297 P~~G~~V~IV~-G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl 352 (353)
.++|+.++... +.-+--.|++++++.....+.|.... -|. .+.+++.+|..+
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~D---YGn-~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTG---YGN-REEQNLSDLLSP 56 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETT---TTE-EEEEEGGGCBCT
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEc---CCC-EEEEcHHHeeCC
Confidence 46788888884 33455789999999866678887764 244 446888888654
No 94
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.89 E-value=1.9e+02 Score=23.62 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=39.0
Q ss_pred ceeEEEEecCCceEEEEecCCCeEE-EEcCCceeeecCCCCCeEEEEeCCCC-CceEEEEe
Q 018594 261 QKGVVRKVIDKYVGEIEMLEKKHVL-RVDQDELETVIPQIGGLVRIVNGAYR-GSNARLLG 319 (353)
Q Consensus 261 ~KgvV~~V~d~~~c~V~l~d~g~~l-~vdq~~LETVIP~~G~~V~IV~G~~R-G~~g~L~s 319 (353)
.-|+|....+.....|++.++-.++ .|+..+=-.|-=.+|+.|+|-.-+|- =..|.++-
T Consensus 17 ~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~ 77 (111)
T 2dgy_A 17 QIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISF 77 (111)
T ss_dssp EEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEE
Confidence 4578888888889999987654444 57766665555567888877765554 23344433
No 95
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=32.17 E-value=87 Score=23.95 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=28.9
Q ss_pred eEEEEecCCceEEEEecCCCeEEEEcCCceeeecCCCCCeEEEEeC
Q 018594 263 GVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNG 308 (353)
Q Consensus 263 gvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP~~G~~V~IV~G 308 (353)
|.|.++ ++..|.|.. .|..-.|+-..++.+ ++|++|+|=-|
T Consensus 7 ~kVvei-~~~~A~vd~--~Gv~r~V~l~Lv~~~--~vGD~VLVH~G 47 (75)
T 2z1c_A 7 GKVIEV-NGPVAVVDF--GGVKREVRLDLMPDT--KPGDWVIVHTG 47 (75)
T ss_dssp EEEEEE-ETTEEEEEE--TTEEEEEECTTSTTC--CTTCEEEEETT
T ss_pred EEEEEE-CCCEEEEEc--CCEEEEEEEEEeCCC--CCCCEEEEecc
Confidence 567777 446788866 355666777777553 67999999766
No 96
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=31.70 E-value=87 Score=28.41 Aligned_cols=51 Identities=25% Similarity=0.334 Sum_probs=40.3
Q ss_pred EeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecC-CCC
Q 018594 248 VMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIP-QIG 300 (353)
Q Consensus 248 Ii~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP-~~G 300 (353)
|-++.++. -.-+..|||+.|.++ .|.|-...-....+|+-+.||++=- +.|
T Consensus 19 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (200)
T 3gox_A 19 IAKNQLGN-IVPNSVGVIRAVNGK-SAMVLFIGLNELKRVDFSELEAIDIYRTG 70 (200)
T ss_dssp EESSCBTT-BCTTBEEEEEEEETT-EEEEEETTTTEEEEEEGGGEEECCGGGSS
T ss_pred Eecccccc-ccccceeeEEecCCc-eEEEEEEehhHhhhcchhhcceeeeeecc
Confidence 66677776 677889999999887 6677777778899999999999853 443
No 97
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=30.29 E-value=4.9 Score=32.34 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=26.2
Q ss_pred ccccccHHHHH-HHhcccccEEEeecCceeEEEeecCChHHH
Q 018594 56 STRWATLTEFV-KYLGRTGKCKVEETPKGWFITYIDRDSETL 96 (353)
Q Consensus 56 aT~W~tLt~Fv-k~Lgr~G~c~vdetekGw~I~yId~~pe~~ 96 (353)
.|.|.||+.|= -.||+.+....-..+.|.| ||||||...
T Consensus 12 ~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~~--FiDRdp~~F 51 (105)
T 1nn7_A 12 QTWQDTLERYPDTLLGSSERDFFYHPETQQY--FFDRDPDIF 51 (105)
T ss_dssp EECHHHHHTSCSSSTTSGGGGGGEEGGGTEE--EECSCTTTH
T ss_pred EEeHHHHhcCCCccccccCCcccccCCCCcE--EEeCCcHHH
Confidence 37778887653 2577766544445677876 489999765
No 98
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=30.20 E-value=29 Score=27.02 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.9
Q ss_pred HHHhcccccEEEeecCceeEEEe
Q 018594 66 VKYLGRTGKCKVEETPKGWFITY 88 (353)
Q Consensus 66 vk~Lgr~G~c~vdetekGw~I~y 88 (353)
+=||.|+|++.+++.+...||..
T Consensus 46 iGWLaREdKI~~~~~~~~l~v~l 68 (77)
T 2l01_A 46 LGWLLREDKVVTSEVEGEIFVKL 68 (77)
T ss_dssp HHHHHHTTCEEEEEETTEEEEEE
T ss_pred HHHHhhcCceEEEeeCCEEEEEe
Confidence 77999999999999999999864
No 99
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str}
Probab=29.63 E-value=1.9e+02 Score=22.81 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=36.5
Q ss_pred ccccceeEEEEecC-CceEEEEecCCCeEEEEcCCceeeecCCCCCeEEEEeCCCCCceEEEEee
Q 018594 257 GYNKQKGVVRKVID-KYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGV 320 (353)
Q Consensus 257 kyYk~KgvV~~V~d-~~~c~V~l~d~g~~l~vdq~~LETVIP~~G~~V~IV~G~~RG~~g~L~si 320 (353)
.+.++.|+|..-+. ...+.|.+. |..-++.. ...||+ |.+|.|+. ..|.+-.+..+
T Consensus 39 ~lIG~~g~V~~~i~~~g~G~V~i~--Ge~W~A~s---~~~i~~-G~~V~Vv~--veG~~LiV~~~ 95 (101)
T 2k5h_A 39 RLIGRKGVVMEAISPQNSGLVKVD--GETWRATS---GTVLDV-GEEVSVKA--IEGVKLVVEKL 95 (101)
T ss_dssp GGTTSEEEEEECBCSSSCEEEEET--TEEEEEEC---SSCBCT-TCEEEEEE--ECSSSEEEEEC
T ss_pred hcCCCEEEEeEEccCCCeEEEEEC--CEEEEEEe---CCcCCC-CCEEEEEE--EECCEEEEEEC
Confidence 57788998888766 447888884 55655432 233444 89998885 44555555544
No 100
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=28.45 E-value=50 Score=29.81 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=25.0
Q ss_pred CCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEecccc
Q 018594 299 IGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVY 336 (353)
Q Consensus 299 ~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~ 336 (353)
+|.-|.||.|.|+|..+.++..-.+.. +. ..||.
T Consensus 47 pGtVlIiL~Gr~~GKrvV~LKql~sgl-lL---VtGP~ 80 (191)
T 4a18_E 47 PGTVLILLAGRFRGKRVVFLKQLKSGL-LL---VTGPY 80 (191)
T ss_dssp TTEEEEECSSTTTTBEEEEEEECTTSC-EE---EECCT
T ss_pred CCCEEEEeccccCCCEEEEEEecCCCe-EE---EecCc
Confidence 477777889999999999998866543 32 34664
No 101
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=28.36 E-value=1.5e+02 Score=20.43 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=31.8
Q ss_pred CCCCeEEEEe-CCCCCceEEEEeeeCCccEEEEEEeccccCCceeeecccccccc
Q 018594 298 QIGGLVRIVN-GAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICK 351 (353)
Q Consensus 298 ~~G~~V~IV~-G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicK 351 (353)
++|+.++..- ..-.--.|++++++.+...+.|.... -|. .+.+++.+|.-
T Consensus 3 k~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvD---YGn-~e~v~~~~lrp 53 (54)
T 3s6w_A 3 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFID---YGN-YEEVLLSNIKP 53 (54)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETT---TCC-EEEEEGGGEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEc---cCC-eEEEeHHHEEE
Confidence 4677777775 23345678999998776667776654 244 34688888753
No 102
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=28.35 E-value=1.2e+02 Score=26.02 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=38.3
Q ss_pred CCcccCCcEEEEeecccCCcccccceeEEEEecC-CceEE--EEecCCCeEEEEcCCceee
Q 018594 237 DYWLCEGIIVKVMSKALADKGYNKQKGVVRKVID-KYVGE--IEMLEKKHVLRVDQDELET 294 (353)
Q Consensus 237 ~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d-~~~c~--V~l~d~g~~l~vdq~~LET 294 (353)
..-+.+|=.|+|+ +|-|-+-.|+|..|.. +..+. |.+.+-...+.|+-+++|.
T Consensus 125 ~~~~~~Gd~V~V~-----~GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~vel~~~qvek 180 (181)
T 2jvv_A 125 KTLFEPGEMVRVN-----DGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 (181)
T ss_dssp CCCCCTTEEEEEC-----SSTTTTEEEEEEEEETTTTEEEEEEEETTEEEEEEECTTTEEE
T ss_pred cccCCCCCEEEEe-----ccCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEEEECHHHEEE
Confidence 4466789999998 6788889999999964 44664 4555434456788887764
No 103
>3s9x_A ASCH domain; MCSG, PSI-2, structural genomics, midwest center for structu genomics, unknown function; 1.35A {Vibrio cholerae tma 21}
Probab=27.94 E-value=66 Score=28.08 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=25.2
Q ss_pred ecCCCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccc
Q 018594 295 VIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDIC 350 (353)
Q Consensus 295 VIP~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedic 350 (353)
-+|++|+.-.|++|.- +-.|+|++.. |..+||.+|.
T Consensus 72 ~lP~vG~~~IvlD~~g-------------~PvciI~tt~-------V~~~pf~~Vt 107 (159)
T 3s9x_A 72 LMPQVGHLQVVTNWDG-------------KPICIIEITS-------VSKCQYNQVS 107 (159)
T ss_dssp CCCCTTCEEEEECTTC-------------CEEEEEEEEE-------EEEEEGGGCC
T ss_pred CCCCcCCEEEEECCCC-------------CEEEEEEEEE-------EEEEEcccCC
Confidence 5899999999999842 2335555543 5567888875
No 104
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=27.63 E-value=40 Score=32.07 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=31.9
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEec
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEK 333 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~ 333 (353)
=+|...+|+.|+-+|..|.+...+..-.-+.|.++.
T Consensus 85 CiGN~A~VvSG~AKG~~G~VtGkHGGieHVlV~F~~ 120 (284)
T 3dcl_A 85 CIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVHFEE 120 (284)
T ss_dssp CBTCEEEECSSTTTTCEEEEEEEETTTTEEEEECCH
T ss_pred ecCceeEEeecccCCCcceEecccCCeeeEEEECCH
Confidence 369999999999999999999999988778887764
No 105
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=27.43 E-value=1.9e+02 Score=25.45 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=29.8
Q ss_pred ceeEEEEecC-CceEEEEecCC-CeEEEEcCC----ceeeecCCCCCeEEEE
Q 018594 261 QKGVVRKVID-KYVGEIEMLEK-KHVLRVDQD----ELETVIPQIGGLVRIV 306 (353)
Q Consensus 261 ~KgvV~~V~d-~~~c~V~l~d~-g~~l~vdq~----~LETVIP~~G~~V~IV 306 (353)
+-|+|.+|.. ..+|.|++.+. ..-+.+-+- +=-+.+|.+|+.|+|+
T Consensus 19 r~G~V~~vd~~~~rvrV~~~~~~t~wl~~~~~~ag~~~~~~~P~vGeqV~v~ 70 (211)
T 3qr8_A 19 RTGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSRTWWAPSVGEQVLIL 70 (211)
T ss_dssp EEEEEEEEETTTTEEEEEETTEECCCEEECCSCBSSSBCCCCCCTTCEEEEE
T ss_pred EEEEEEEEECCCCEEEEEeCCccceeEEeEcccccCCceEeCCCCCCEEEEE
Confidence 3578888854 56788887432 223443322 2346789999999998
No 106
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=25.74 E-value=14 Score=31.75 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=51.0
Q ss_pred CchhhHhhhHHHHHHHHHHHHHhccC---CcccccceeeeeecccccceeecccccccHHHHHHHhccc
Q 018594 7 NPDRIVEGYSEEFEAGFLELMRRSHR---FSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRT 72 (353)
Q Consensus 7 np~~~i~~fS~eF~~~Fl~lLr~~~g---~krV~aN~vYneyI~dr~HiHMNaT~W~tLt~Fvk~Lgr~ 72 (353)
-+..|++.|+..|+..+.+.++.=-+ -.-+..|-+=+-|-.+|=+|+|+.+.+.-|..|++==+..
T Consensus 54 ~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~~fL~~~~~~ 122 (148)
T 2j49_A 54 YARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESI 122 (148)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHHHHHHHcCcc
Confidence 35688999998888777666665444 3456778888889999999999999999998887644433
No 107
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=25.21 E-value=3e+02 Score=23.06 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=43.7
Q ss_pred ChHHHHHHH-HHHHHhhcCCCCCcccCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeee
Q 018594 217 SALEELMRE-EEKVKEKMNRKDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETV 295 (353)
Q Consensus 217 saLdeime~-ee~kk~~~~r~~~WL~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETV 295 (353)
.+|+.||+. .+..+. ......| .+|-.+-.. .-.||.+|- |.|.++.+...+.|...|-|..-.+ +.|-+.
T Consensus 26 ~~L~~L~~~l~~~~~~-~p~~~~~-~~G~~c~A~--~~~d~~wyR--a~I~~~~~~~~~~V~fvDyGn~~~v--~~lr~l 97 (169)
T 3ntk_A 26 PALEQMTDKLLDAEQD-LPAFSDL-KEGALCVAQ--FPEDEVFYR--AQIRKVLDDGKCEVHFIDFGNNAVT--QQFRQL 97 (169)
T ss_dssp HHHHHHHHHHHHHGGG-CCBCCCC-CTTCEEEEE--ETTTTEEEE--EEEEEECSTTCEEEEETTTTEEEEE--SCEECC
T ss_pred HHHHHHHHHHHHHHhc-CCCCCCC-CCCCEEEEE--ECCCCcEEE--EEEEEECCCCEEEEEEEecCCeEEh--hhhhcc
Confidence 467777753 332211 1122355 444444232 224778886 8999998866899999998887654 455554
Q ss_pred cC
Q 018594 296 IP 297 (353)
Q Consensus 296 IP 297 (353)
.|
T Consensus 98 ~~ 99 (169)
T 3ntk_A 98 PE 99 (169)
T ss_dssp CH
T ss_pred CH
Confidence 33
No 108
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=25.15 E-value=1.1e+02 Score=26.20 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=31.3
Q ss_pred CCCeEEEEe----CCCCCceEEEEeeeCCccEEEEEEeccccCCceeeecccccccc
Q 018594 299 IGGLVRIVN----GAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICK 351 (353)
Q Consensus 299 ~G~~V~IV~----G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicK 351 (353)
.|..|.|-. ..-+-..|+|.+++.+. ++|.+... ..+..+ .+||++|.+
T Consensus 103 ~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~--v~l~~~~k-~~~~~~-~i~~~~I~k 155 (164)
T 1ib8_A 103 VGKYIHVGLYQAIDKQKVFEGTLLAFEEDE--LTMEYMDK-TRKKTV-QIPYSLVSK 155 (164)
T ss_dssp CSEEEEEECSSCSSSCSEEEEEEEEEETTE--EEEEEECS-SCEEEE-EECSSCCSS
T ss_pred CCcEEEEEEecccCCceEEEEEEEEEeCCE--EEEEEecc-cCCeEE-EEEHHHCcE
Confidence 577777763 22344689999999876 55555431 123344 499999976
No 109
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=23.98 E-value=24 Score=31.95 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=22.9
Q ss_pred ccccccHHHHH-HHhccc--c--cEEEeecCceeEEEeecCChHHH
Q 018594 56 STRWATLTEFV-KYLGRT--G--KCKVEETPKGWFITYIDRDSETL 96 (353)
Q Consensus 56 aT~W~tLt~Fv-k~Lgr~--G--~c~vdetekGw~I~yId~~pe~~ 96 (353)
.|.|.||+.|= -+||+- + ....+.++.|+| ||||||...
T Consensus 24 ~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~gey--FIDRDP~~F 67 (202)
T 3drx_A 24 LTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAY--LIDRDPTYF 67 (202)
T ss_dssp EEETTGGGSCTTSSTHHHHSCCCC----BCTTCCE--EECSCSTTH
T ss_pred EEeHHHHhCCCcchHHHHhcCccccCcccCCCccE--EecCChHHH
Confidence 38888998753 134331 1 122344578987 799999754
No 110
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=23.89 E-value=1.4e+02 Score=22.66 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=35.2
Q ss_pred ecCCCCCeEEEEe-CCCCCceEEEEeeeCCccEEEEEEeccccCCceeeeccccccccc
Q 018594 295 VIPQIGGLVRIVN-GAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKL 352 (353)
Q Consensus 295 VIP~~G~~V~IV~-G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicKl 352 (353)
..|.+|+.+.+.. ..-.-..|+++++..+ ..+.|.+.. -|. .+.++..+|..+
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~-~~~~V~fvD---yGn-~e~v~~~~lr~l 79 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVD---FGD-NGDCPLKDLRAL 79 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETT---TCC-EEEECGGGCEEC
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEc---CCC-eEEEEHHHhhhc
Confidence 4678999998874 4445678888888754 346665553 244 345888887654
No 111
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=23.80 E-value=2e+02 Score=21.54 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=36.5
Q ss_pred CCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCceeeecccccccc
Q 018594 298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICK 351 (353)
Q Consensus 298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~~v~~l~yedicK 351 (353)
++|++||.-.|.-+=--|++.+|+.+ ...+|....| . .+.+...+|..
T Consensus 8 ~vGd~vmArW~D~~yYpA~I~si~~~-~~Y~V~F~dG----~-~etvk~~~ikp 55 (67)
T 3p8d_A 8 QINEQVLACWSDCRFYPAKVTAVNKD-GTYTVKFYDG----V-VQTVKHIHVKA 55 (67)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT-SEEEEEETTS----C-EEEEEGGGEEE
T ss_pred ccCCEEEEEcCCCCEeeEEEEEECCC-CeEEEEEeCC----c-eEEEeHHHccc
Confidence 58999999998888899999999988 4577887753 2 33466666543
No 112
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=22.33 E-value=90 Score=25.22 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=41.3
Q ss_pred ceeEEEEecCCceEEEEecCCCeEE-EEcCCceeeecCCCCCeEEEEeCCCC-CceEEEEeee
Q 018594 261 QKGVVRKVIDKYVGEIEMLEKKHVL-RVDQDELETVIPQIGGLVRIVNGAYR-GSNARLLGVD 321 (353)
Q Consensus 261 ~KgvV~~V~d~~~c~V~l~d~g~~l-~vdq~~LETVIP~~G~~V~IV~G~~R-G~~g~L~siD 321 (353)
.-|+|..+.+...+.|++.++-.++ .++..+=-.|-=.+|+.|+|-.-+|- -..|.++-+-
T Consensus 22 ~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~ 84 (102)
T 1jt8_A 22 ILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRY 84 (102)
T ss_dssp EEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEES
T ss_pred EEEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccCCCCceEEEEEEe
Confidence 3567888888888999887643333 56665555444467898888777776 5666666554
No 113
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=22.08 E-value=30 Score=25.76 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=30.5
Q ss_pred eeEEEEecCCceEEEEecCCCeEE-EEcCCce-eeecCCCCCeEEEEeCCCCCceEEE
Q 018594 262 KGVVRKVIDKYVGEIEMLEKKHVL-RVDQDEL-ETVIPQIGGLVRIVNGAYRGSNARL 317 (353)
Q Consensus 262 KgvV~~V~d~~~c~V~l~d~g~~l-~vdq~~L-ETVIP~~G~~V~IV~G~~RG~~g~L 317 (353)
.|+|....+.....|++.++...+ .+...+- ..+-|.+|+.|.|-.-+|-...|.+
T Consensus 10 ~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I 67 (71)
T 1hr0_W 10 EGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRI 67 (71)
T ss_dssp EEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEE
T ss_pred EEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEE
Confidence 355555555334445554322222 5665555 3677889999988654444334443
No 114
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein struct initiative; 3.00A {Enterococcus faecalis} SCOP: b.122.1.4
Probab=21.76 E-value=99 Score=27.10 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCceEEEEecCCCeEEEEcCCceeeecCCCCCeEEEEeCC
Q 018594 270 DKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGA 309 (353)
Q Consensus 270 d~~~c~V~l~d~g~~l~vdq~~LETVIP~~G~~V~IV~G~ 309 (353)
+..+|++.+... ...++ | .+|++|+..+||+|.
T Consensus 46 G~KTAT~s~~~~---Y~~~~---e-~lP~vG~~~Ivld~~ 78 (166)
T 1t62_A 46 GRKTATCSSLDI---YKMEE---E-QLPKAGQYDIILDGQ 78 (166)
T ss_dssp TSCCEEEEESTT---SCTTT---C-CCCCTTCEEEEECTT
T ss_pred CCeEEEecCHHH---HhhcC---C-CCCCCCcEEEEEcCC
Confidence 345777776531 11111 2 489999999999884
No 115
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.92 E-value=3.7e+02 Score=25.06 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=15.2
Q ss_pred CCCCceEEEEeeeCCccEEEEE
Q 018594 309 AYRGSNARLLGVDTDKFCAQVK 330 (353)
Q Consensus 309 ~~RG~~g~L~siD~~~~~a~V~ 330 (353)
+.-|.+.+|.++-.+...+.|.
T Consensus 156 E~~Gev~tv~E~l~d~~R~lV~ 177 (251)
T 3m9b_A 156 EAVGEISTLREILADGHRALVV 177 (251)
T ss_dssp CCCSEEEEEEEECTTSSEEEEE
T ss_pred CCcccEEEEEEEecCCCEEEEe
Confidence 5678888888887555456553
Done!