Citrus Sinensis ID: 018595

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Secondary Structure (PSIPRED)
cccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHcHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHHcccHcccccHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHcHcccc
Coil and Loop (DISEMBL)
maspptkdapadkkaegstpkseatsgsvrdsssspsgasaasafpgvggaapnpfdfsamsgllndpsIKELAEQIAKDPAFNSMAEQLQKTLhganaeesipqfdttQYYSTMQQVMQNPQFMTMAERLGnalmqdpsmshmmesltnptkkdQIEERMAKikedpslkpildeiesggpsammKYWNDKDVLQKLGEAMglavggdattsadnagadeaeevgnedesivhhtasvgdaEGLKNALaagadkdeedsegrTALHFACGYGEVKCAQILLEAganvdaldknknTALHYAAGYGRKECVALLLENGAavtlqnmdgktpidvaKLNSQHDVLKLLEKDAFL
Flexible Loop (DISEMBL)
maspptkdapadkkaegstpkseatsgsvrdsssspsGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAkikedpslkpiLDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Low Complexity Region (SEG)
MASPPTKDAPADKKAEGSTPKSEatsgsvrdsssspsgasaasafpgvggaapNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Disordered region (IsUnstruct)
******************************************************************************************************************************************************************************************KYWNDKDVLQKLGEAMGLA**********************************************************TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL****************
Disordered Region (DISOPRED)
*****************************************************NPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Disordered Region (DISEMBL)
********************************************FPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA************RTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Disordered Region (DISPRO)
***************************************************APNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.903	0.932	0.667	1e-118
Q8N283	1001	Ankyrin repeat domain-con	yes	no	0.467	0.164	0.331	4e-13
Q91ZT9	288	Ankyrin repeat and SOCS b	no	no	0.322	0.395	0.382	7e-13
Q5F478	990	Serine/threonine-protein	no	no	0.249	0.088	0.460	8e-13
Q5R6D7	288	Ankyrin repeat and SOCS b	no	no	0.322	0.395	0.382	8e-13
Q9H765	288	Ankyrin repeat and SOCS b	no	no	0.322	0.395	0.382	9e-13
Q08E43	288	Ankyrin repeat and SOCS b	no	no	0.322	0.395	0.382	9e-13
Q6PFX9	1320	Tankyrase-1 OS=Mus muscul	no	no	0.339	0.090	0.388	1e-12
O95271	1327	Tankyrase-1 OS=Homo sapie	no	no	0.339	0.090	0.388	1e-12
Q9H2K2	1166	Tankyrase-2 OS=Homo sapie	no	no	0.339	0.102	0.388	1e-12

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/325 (66%), Positives = 260/325 (80%), Gaps = 6/325 (1%)

Query: 31  DSSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQL 90
           + SS P  AS +S    + G   N FDFS M+ +LNDPSI+E+AEQIAKDPAFN +AEQL
Sbjct: 22  NKSSKPESASGSSTSSAMPGLNFNAFDFSNMASILNDPSIREMAEQIAKDPAFNQLAEQL 81

Query: 91  QKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTN 150
           Q+++  A  E   P FD  QY +TMQQVM NP+F TMAE+LG AL+QDP MS  +++ +N
Sbjct: 82  QRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLDAFSN 141

Query: 151 PTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGG-- 208
           P   +   ERMA++KEDP LKPILDEI++GGPSAMMKYWND +VL+KLGEAMG+ V G  
Sbjct: 142 PETAEHFTERMARMKEDPELKPILDEIDAGGPSAMMKYWNDPEVLKKLGEAMGMPVAGLP 201

Query: 209 DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF 268
           D T SA+   A+E EE     ESIVH TAS+GD EGLK ALA+G +KDEEDSEGRTALHF
Sbjct: 202 DQTVSAEPEVAEEGEEE----ESIVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHF 257

Query: 269 ACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 328
           ACGYGE+KCAQ+L++AGA+V+A+DKNKNT LHYAAGYGRKECV+LLLENGAAVTLQN+D 
Sbjct: 258 ACGYGELKCAQVLIDAGASVNAVDKNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDE 317

Query: 329 KTPIDVAKLNSQHDVLKLLEKDAFL 353
           KTPIDVAKLNSQ +V+KLLEKDAFL
Sbjct: 318 KTPIDVAKLNSQLEVVKLLEKDAFL 342

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8N283|ANR35_HUMAN Ankyrin repeat domain-containing protein 35 OS=Homo sapiens GN=ANKRD35 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 4/169 (2%)

Query: 186 MKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGL 245
           ++ WN  D  QKL EA+     G     A    A   + + +  +S  H  AS G  E L
Sbjct: 14  VERWNRHD--QKLLEAVHRGDVGRVAALASRKSARPTK-LDSNGQSPFHLAASKGLTECL 70

Query: 246 KNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY 305
              LA GAD + ++ +G TALH A    + +C ++LL+ GAN DA+D    + LH+AA  
Sbjct: 71  TILLANGADINSKNEDGSTALHLATISCQPQCVKVLLQHGANEDAVDAENRSPLHWAASS 130

Query: 306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL-KLLEKDAFL 353
           G    V LL ++ A + + + DG+TP+ +A L     +  +LL++ A +
Sbjct: 131 GCASSVLLLCDHEAFLDVLDNDGRTPLMIASLGGHAAICSQLLQRGARV 179

Homo sapiens (taxid: 9606)

>sp|Q91ZT9|ASB8_MOUSE Ankyrin repeat and SOCS box protein 8 OS=Mus musculus GN=Asb8 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H    V DA+ ++  L  GA+ +  D   RTALH+A    E  C ++LLE GAN +ALD
Sbjct: 57  LHCACMVSDADCVELLLEKGAEVNALDGYNRTALHYAAERDEA-CVEVLLEYGANPNALD 115

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            N++T LH+AA     ECV  LLE+GA+V   + +  TP+  A +    + + +L
Sbjct: 116 GNRDTPLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSIL 170

May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 54/89 (60%)

Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
           D  GRTALH A   G V+   +LL  GAN++A DK    ALH+AA  G  E VALL+ +G
Sbjct: 137 DRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLEVVALLINHG 196

Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           A VT ++  G TP+  A  N Q +++K L
Sbjct: 197 AEVTCKDKKGYTPLHAAASNGQINIVKHL 225

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q5R6D7|ASB8_PONAB Ankyrin repeat and SOCS box protein 8 OS=Pongo abelii GN=ASB8 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H    V DA+ ++  L  GA+ +  D   RTALH+A    E  C ++LLE GAN +ALD
Sbjct: 57  LHCACMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEA-CVEVLLEYGANPNALD 115

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            N++T LH+AA     ECV  LLE+GA+V   + +  TP+  A +    + + +L
Sbjct: 116 GNRDTPLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSIL 170

May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Pongo abelii (taxid: 9601)

>sp|Q9H765|ASB8_HUMAN Ankyrin repeat and SOCS box protein 8 OS=Homo sapiens GN=ASB8 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H    V DA+ ++  L  GA+ +  D   RTALH+A    E  C ++LLE GAN +ALD
Sbjct: 57  LHCACMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEA-CVEVLLEYGANPNALD 115

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            N++T LH+AA     ECV  LLE+GA+V   + +  TP+  A +    + + +L
Sbjct: 116 GNRDTPLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSIL 170

May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Homo sapiens (taxid: 9606)

>sp|Q08E43|ASB8_BOVIN Ankyrin repeat and SOCS box protein 8 OS=Bos taurus GN=ASB8 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H    V DA+ ++  L  GA+ +  D   RTALH+A    E  C ++LLE GAN +ALD
Sbjct: 57  LHCACMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEA-CVEVLLEYGANPNALD 115

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            N++T LH+AA     ECV  LLE+GA+V   + +  TP+  A +    + + +L
Sbjct: 116 GNRDTPLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSIL 170

May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Bos taurus (taxid: 9913)

>sp|Q6PFX9|TNKS1_MOUSE Tankyrase-1 OS=Mus musculus GN=Tnks PE=1 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A       ++  L  GAD   +D  G   LH AC YG  + A++L+  GA+V+  D
Sbjct: 681 LHFAAGYNRVSVVEYLLHHGADVHAKDKGGLVPLHNACSYGHYEVAELLVRHGASVNVAD 740

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
             K T LH AA  G+ E   LLL++GA  T +N DG TP+D+ K     D+  LL  DA 
Sbjct: 741 LWKFTPLHEAAAKGKYEICKLLLKHGADPTKKNRDGNTPLDLVK-EGDTDIQDLLRGDAA 799

Query: 353 L 353
           L
Sbjct: 800 L 800

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|O95271|TNKS1_HUMAN Tankyrase-1 OS=Homo sapiens GN=TNKS PE=1 SV=2

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A       ++  L  GAD   +D  G   LH AC YG  + A++L+  GA+V+  D
Sbjct: 688 LHFAAGYNRVSVVEYLLHHGADVHAKDKGGLVPLHNACSYGHYEVAELLVRHGASVNVAD 747

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
             K T LH AA  G+ E   LLL++GA  T +N DG TP+D+ K     D+  LL  DA 
Sbjct: 748 LWKFTPLHEAAAKGKYEICKLLLKHGADPTKKNRDGNTPLDLVK-EGDTDIQDLLRGDAA 806

Query: 353 L 353
           L
Sbjct: 807 L 807

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q9H2K2|TNKS2_HUMAN Tankyrase-2 OS=Homo sapiens GN=TNKS2 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A       ++  L  GAD   +D  G   LH AC YG  + A++L++ GA V+  D
Sbjct: 530 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 589

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
             K T LH AA  G+ E   LLL++GA  T +N DG TP+D+ K +   D+  LL  DA 
Sbjct: 590 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 648

Query: 353 L 353
           L
Sbjct: 649 L 649

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
359474945	358	PREDICTED: ankyrin repeat domain-contain	0.991	0.977	0.811	1e-159
37625031	354	putative ankyrin-repeat protein [Vitis a	0.875	0.872	0.858	1e-158
255546638	345	ankyrin repeat domain protein, putative	0.966	0.988	0.792	1e-157
327344119	371	putative PDF1-interacting protein 2, par	0.912	0.867	0.829	1e-155
449444443	359	PREDICTED: ankyrin repeat domain-contain	0.983	0.966	0.752	1e-154
224132484	308	predicted protein [Populus trichocarpa]	0.872	1.0	0.834	1e-154
224132478	366	predicted protein [Populus trichocarpa]	0.852	0.822	0.857	1e-153
359806300	352	uncharacterized protein LOC100784610 [Gl	0.997	1.0	0.762	1e-153
359806322	350	uncharacterized protein LOC100797622 [Gl	0.980	0.988	0.756	1e-153
118485011	366	unknown [Populus trichocarpa]	0.852	0.822	0.853	1e-152

>gi|359474945|ref|XP_002283498.2| PREDICTED: ankyrin repeat domain-containing protein 2-like [Vitis vinifera] gi|297744439|emb|CBI37701.3| unnamed protein product [Vitis vinifera]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 293/361 (81%), Positives = 311/361 (86%), Gaps = 11/361 (3%)

Query: 1   MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSA 60
           MAS   KD PAD+K  GS   S++ S S    S     A+AAS  PG G  A NPFDFSA
Sbjct: 1   MASNSDKDTPADEKT-GSAENSKSDSSSGESHSEQRRAAAAAS-VPGAGLPA-NPFDFSA 57

Query: 61  MSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQ 120
           M+GLLNDPSIKELAEQIAKDPAFN MAEQLQKT HGA  EESIPQFDT QYYSTMQQVMQ
Sbjct: 58  MTGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTFHGAAVEESIPQFDTQQYYSTMQQVMQ 117

Query: 121 NPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESG 180
           NPQFMTMAERLGNALMQDPSMS M+E+L NPT KDQ+EERMA+IKEDPSLKPILDEIE+G
Sbjct: 118 NPQFMTMAERLGNALMQDPSMSSMLENLANPTHKDQLEERMARIKEDPSLKPILDEIETG 177

Query: 181 GPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHH----- 235
           GP+AMM+YWNDKDVLQKLGEAMGLAV GDA  SADN+G DEAEE+ NEDESI HH     
Sbjct: 178 GPAAMMRYWNDKDVLQKLGEAMGLAVSGDAAASADNSGLDEAEELANEDESIAHHHSESI 237

Query: 236 ---TASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
              TASVGD EGLKNALA+GADKDEEDSEGRTALHFACGYGEVKCAQIL+EAGA VDALD
Sbjct: 238 VHDTASVGDVEGLKNALASGADKDEEDSEGRTALHFACGYGEVKCAQILVEAGATVDALD 297

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
           KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN+QH+VLKLLEKDAF
Sbjct: 298 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQHEVLKLLEKDAF 357

Query: 353 L 353
           L
Sbjct: 358 L 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37625031|gb|AAQ96339.1| putative ankyrin-repeat protein [Vitis aestivalis]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 273/318 (85%), Positives = 288/318 (90%), Gaps = 9/318 (2%)

Query: 44  AFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESI 103
           + PG  G   NPFDFSAM+GLLNDPSIKELAEQIAKDPAFN MAEQLQKT HGA  EESI
Sbjct: 38  SVPG-AGLPTNPFDFSAMTGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTFHGAAVEESI 96

Query: 104 PQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAK 163
           PQFDT QYYSTMQQVMQNPQFMTMAERLGNALMQDPSMS M+E+L NPT KDQ+EERMA+
Sbjct: 97  PQFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSSMLENLANPTHKDQLEERMAR 156

Query: 164 IKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAE 223
           IKEDPSLKPILDEIE+GGP+AMM+YWNDKDVLQKLGEAMGLAV GDA  SADN+G DEAE
Sbjct: 157 IKEDPSLKPILDEIETGGPAAMMRYWNDKDVLQKLGEAMGLAVSGDAAASADNSGLDEAE 216

Query: 224 EVGNEDESIVHH--------TASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           E+ NEDESI HH        TASVGD EGLKNALA+GADKDEEDSEGRTALHFACGYGEV
Sbjct: 217 ELANEDESIAHHHSESIVHDTASVGDVEGLKNALASGADKDEEDSEGRTALHFACGYGEV 276

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           KCAQIL+EAGA VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA
Sbjct: 277 KCAQILVEAGATVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 336

Query: 336 KLNSQHDVLKLLEKDAFL 353
           KLN+QH+VLKLLEKDAFL
Sbjct: 337 KLNNQHEVLKLLEKDAFL 354

Source: Vitis aestivalis

Species: Vitis aestivalis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546638|ref|XP_002514378.1| ankyrin repeat domain protein, putative [Ricinus communis] gi|223546475|gb|EEF47974.1| ankyrin repeat domain protein, putative [Ricinus communis]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 283/357 (79%), Positives = 305/357 (85%), Gaps = 16/357 (4%)

Query: 1   MASPPTKDAPADKK-AEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFS 59
           MAS   KD P+D+K A+  T   E+ SG  R   S   G               NPFDFS
Sbjct: 1   MASNSNKDVPSDEKTAKPETSSGESQSGQRRSPPSPGPGVVP------------NPFDFS 48

Query: 60  AMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHG---ANAEESIPQFDTTQYYSTMQ 116
           AM+GLLNDPSIKELAEQIAKDPAFN MAEQLQKTLHG   A AEESIPQFD+ QYYSTMQ
Sbjct: 49  AMTGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTLHGVGAAAAEESIPQFDSQQYYSTMQ 108

Query: 117 QVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDE 176
           QVMQNPQFMTMAERLGNALMQDPSMS M+ESLTNP+ KDQIEERMA+IKEDPSLKPIL+E
Sbjct: 109 QVMQNPQFMTMAERLGNALMQDPSMSQMLESLTNPSHKDQIEERMAQIKEDPSLKPILEE 168

Query: 177 IESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHT 236
           IESGGP+AMM+YWND+DVL+KLGEAMGLAV  +A +SA+N G +EAEE GNEDESIVH+ 
Sbjct: 169 IESGGPAAMMRYWNDQDVLKKLGEAMGLAVSEEAASSAENPGQEEAEEAGNEDESIVHNC 228

Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           ASVGD EGLK ALA+GADKDEEDSEGRTALHFACGYGEVKCAQ+LLEAGA VDALDKNKN
Sbjct: 229 ASVGDIEGLKAALASGADKDEEDSEGRTALHFACGYGEVKCAQVLLEAGATVDALDKNKN 288

Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 353
           TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN+QHDVLKLLEKDAFL
Sbjct: 289 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQHDVLKLLEKDAFL 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327344119|gb|AEA50964.1| putative PDF1-interacting protein 2, partial [Gossypium barbadense]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/322 (82%), Positives = 288/322 (89%)

Query: 32  SSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQ 91
           S  + +GA   +A PG G   PNPFDFSAMSGLLNDPSIKELAEQIAKDP+FN MAEQ  
Sbjct: 50  SQPAQAGAFPPNAMPGPGFVPPNPFDFSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQPT 109

Query: 92  KTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNP 151
           KT  GA AEE+ PQFD  QYYSTMQQVMQNPQFMTMAERLGNALMQDP+MS M++SL NP
Sbjct: 110 KTFQGAAAEETTPQFDPQQYYSTMQQVMQNPQFMTMAERLGNALMQDPAMSTMLDSLANP 169

Query: 152 TKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDAT 211
            +KDQIEERMA+IKEDPSLKPIL+EIESGGP+AMM+YWNDKDVLQKLGEAMGLAV GDA 
Sbjct: 170 QQKDQIEERMARIKEDPSLKPILEEIESGGPAAMMRYWNDKDVLQKLGEAMGLAVTGDAA 229

Query: 212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG 271
           TSA N+ ADE +E GNEDESIVHH ASVGD EGLK AL++GADKDEEDSEGRTALHFACG
Sbjct: 230 TSAGNSAADEEDEAGNEDESIVHHCASVGDVEGLKTALSSGADKDEEDSEGRTALHFACG 289

Query: 272 YGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP 331
           YGEVKC QILLEAGA VDALDKNKNTALHYAAGYGRK+CVALLLENGAAVTLQNMDGKTP
Sbjct: 290 YGEVKCTQILLEAGAKVDALDKNKNTALHYAAGYGRKDCVALLLENGAAVTLQNMDGKTP 349

Query: 332 IDVAKLNSQHDVLKLLEKDAFL 353
           I+VAKLN+QH+VLKLLEKDAFL
Sbjct: 350 IEVAKLNNQHEVLKLLEKDAFL 371

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444443|ref|XP_004139984.1| PREDICTED: ankyrin repeat domain-containing protein 2-like [Cucumis sativus] gi|449475676|ref|XP_004154520.1| PREDICTED: ankyrin repeat domain-containing protein 2-like [Cucumis sativus]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/356 (75%), Positives = 300/356 (84%), Gaps = 9/356 (2%)

Query: 6   TKDAPADKK--------AEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFD 57
           TKD  AD+K        A+  T KSEA+      +   P       A P  G   PNPFD
Sbjct: 5   TKDVAADEKTALSETQSAKSETSKSEASKSETSSAEQQPDKPKPTPAAPHEGEFPPNPFD 64

Query: 58  FSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQ 117
           FSAM+GLLNDPSI+ELA QIAKDPAFN MA QLQKT  GA+A++S PQFDT QYYSTMQQ
Sbjct: 65  FSAMTGLLNDPSIQELASQIAKDPAFNQMASQLQKTFQGASAQQSTPQFDTQQYYSTMQQ 124

Query: 118 VMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEI 177
           VMQNPQFMTMAERLGNALMQDPSMS M+E+  NP+ K+Q+EERMA+IKEDPSLKPILDEI
Sbjct: 125 VMQNPQFMTMAERLGNALMQDPSMSSMLETFANPSNKEQLEERMAQIKEDPSLKPILDEI 184

Query: 178 ESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTA 237
           E+GGP+AMM+YWND+DVL+KLGEAMG AV GDA  +A+++ AD++EEVGN+DES+VH TA
Sbjct: 185 ETGGPAAMMRYWNDRDVLKKLGEAMGFAVYGDA-ANAESSAADDSEEVGNDDESVVHQTA 243

Query: 238 SVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNT 297
           SVGDAEGLKNALAAGA+KDEEDSEGRTALHFACGYGE KCAQILLEAG  VDALDKNKNT
Sbjct: 244 SVGDAEGLKNALAAGANKDEEDSEGRTALHFACGYGETKCAQILLEAGVKVDALDKNKNT 303

Query: 298 ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 353
           ALHYAAGYGRKECVALLLENGAAVTLQN+DGKTPIDVAKLN+QH+VLKLLEKD FL
Sbjct: 304 ALHYAAGYGRKECVALLLENGAAVTLQNLDGKTPIDVAKLNNQHEVLKLLEKDVFL 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132484|ref|XP_002328292.1| predicted protein [Populus trichocarpa] gi|222837807|gb|EEE76172.1| predicted protein [Populus trichocarpa]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/314 (83%), Positives = 286/314 (91%), Gaps = 6/314 (1%)

Query: 40  SAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANA 99
           SAA+ FP      PNPFDFSAM+GLLNDPSIKELAEQI+KDP+FN MAEQLQKT  GA A
Sbjct: 1   SAAAGFP------PNPFDFSAMTGLLNDPSIKELAEQISKDPSFNQMAEQLQKTFQGAPA 54

Query: 100 EESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEE 159
           E++IP FDT QYYSTMQQVMQNPQFMTMAERLGNALMQDPSMS M+ES +NP++KDQIEE
Sbjct: 55  EDAIPNFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSQMLESFSNPSQKDQIEE 114

Query: 160 RMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGA 219
           RM +I+EDPSLKPIL+EIESGGP+AMM+YWNDKDVLQKLGEAMGLAV  +A TS + +G 
Sbjct: 115 RMTRIREDPSLKPILEEIESGGPAAMMRYWNDKDVLQKLGEAMGLAVSEEAGTSVETSGH 174

Query: 220 DEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQ 279
           +E EE GNEDES+VHH ASVGD EGLKNALA+GADKDEEDSEGRTALHF+CGYGEVKCAQ
Sbjct: 175 EEVEEAGNEDESVVHHCASVGDVEGLKNALASGADKDEEDSEGRTALHFSCGYGEVKCAQ 234

Query: 280 ILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 339
           ILLEAGA VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN+
Sbjct: 235 ILLEAGATVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNN 294

Query: 340 QHDVLKLLEKDAFL 353
           Q +VLKLLEKDAFL
Sbjct: 295 QQEVLKLLEKDAFL 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132478|ref|XP_002328290.1| predicted protein [Populus trichocarpa] gi|222837805|gb|EEE76170.1| predicted protein [Populus trichocarpa]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/301 (85%), Positives = 280/301 (93%)

Query: 53  PNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYY 112
           P+PFDFSAM+GLLNDPSIKELAEQIAKDP+FN MAEQLQKT  GA AE++IP FDT QYY
Sbjct: 66  PSPFDFSAMTGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGATAEDAIPNFDTQQYY 125

Query: 113 STMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKP 172
           STMQQVMQNPQFMTMAE LGNALMQDPSMS M+ES TNP++KDQIEERM +I+EDPSLKP
Sbjct: 126 STMQQVMQNPQFMTMAEHLGNALMQDPSMSQMLESFTNPSQKDQIEERMTRIREDPSLKP 185

Query: 173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESI 232
           IL+EIESGGP+AMM+YWNDKDVLQKLGEAMGLAV  +A TS + +G +EAEE GNEDES+
Sbjct: 186 ILEEIESGGPAAMMRYWNDKDVLQKLGEAMGLAVSEEAGTSVETSGHEEAEEAGNEDESV 245

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           VHH ASVGD EGLKNALA+GADKDEEDSEGRTALHF+CGYGEVKCAQILLEAGA VDALD
Sbjct: 246 VHHCASVGDVEGLKNALASGADKDEEDSEGRTALHFSCGYGEVKCAQILLEAGATVDALD 305

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
           KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN+Q +VLKLLEKDAF
Sbjct: 306 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQQEVLKLLEKDAF 365

Query: 353 L 353
           L
Sbjct: 366 L 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806300|ref|NP_001241477.1| uncharacterized protein LOC100784610 [Glycine max] gi|255646471|gb|ACU23714.1| unknown [Glycine max]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/353 (76%), Positives = 300/353 (84%), Gaps = 1/353 (0%)

Query: 1   MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSA 60
           MAS   KD PAD KA     K+     S +DS +     +     PG  G   NPFD SA
Sbjct: 1   MASDSKKDFPADDKAGTEESKTSKDETSSKDSPAEQRATATFGPRPGPAGHPGNPFDLSA 60

Query: 61  MSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQ 120
           MSGLLNDPSIKELAEQIAKDP+FN MAEQLQKT  GA  +++IP FD  QY+STMQQVMQ
Sbjct: 61  MSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGA-PQDAIPSFDNQQYFSTMQQVMQ 119

Query: 121 NPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESG 180
           NP FMTMAERLGNALMQDPSMS M+ES +NP+ KDQ+EERMA+IKEDPSLK IL+EIE+G
Sbjct: 120 NPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMARIKEDPSLKHILEEIETG 179

Query: 181 GPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVG 240
           GP+AMM+YWN+++VLQKLG+AMGLA  GDA  SA+N+GADE E++GNEDESIVHHTASVG
Sbjct: 180 GPAAMMRYWNNEEVLQKLGQAMGLANSGDAGASAENSGADETEDLGNEDESIVHHTASVG 239

Query: 241 DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALH 300
           D EGLKNALA+GADKDEEDSEGRTALHFACGYGEVKCAQ+LLEAGA VDALDKNKNTALH
Sbjct: 240 DVEGLKNALASGADKDEEDSEGRTALHFACGYGEVKCAQVLLEAGAKVDALDKNKNTALH 299

Query: 301 YAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 353
           YAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN+Q++VLKLLEKDAFL
Sbjct: 300 YAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQNEVLKLLEKDAFL 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806322|ref|NP_001241225.1| uncharacterized protein LOC100797622 [Glycine max] gi|255639193|gb|ACU19895.1| unknown [Glycine max]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/357 (75%), Positives = 304/357 (85%), Gaps = 11/357 (3%)

Query: 1   MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASA----ASAFPGVGGAAPNPF 56
           MAS   KD PAD KA  +  K+     S +DS ++    +A    A+ FPG      NPF
Sbjct: 1   MASDSKKDFPADDKAGTAENKASKDETSSKDSPAAQRATTATSGPATGFPG------NPF 54

Query: 57  DFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQ 116
           DFSAMSGLLNDPSIKELAEQIAKDP+FN MAEQLQKT  GA  ++++P FD  QY+STMQ
Sbjct: 55  DFSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGA-PQDAMPSFDNQQYFSTMQ 113

Query: 117 QVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDE 176
           QVMQNP FMTMAERLGNALMQDPSMS M+ES +NP+ KDQ+EERM +IKEDPSLK IL+E
Sbjct: 114 QVMQNPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMTRIKEDPSLKHILEE 173

Query: 177 IESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHT 236
           IE+GGP+AMM+YWND++VL+KLG+AMGLA  GD   SA+N+GADE E++GNEDESIVHHT
Sbjct: 174 IETGGPAAMMRYWNDEEVLRKLGQAMGLANSGDVGASAENSGADETEDLGNEDESIVHHT 233

Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           ASVGD EGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQ+LLEAGA VDALDKNKN
Sbjct: 234 ASVGDVEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQVLLEAGAKVDALDKNKN 293

Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 353
           TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN+Q++VLKLLEKDAFL
Sbjct: 294 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQNEVLKLLEKDAFL 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485011|gb|ABK94370.1| unknown [Populus trichocarpa]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/301 (85%), Positives = 279/301 (92%)

Query: 53  PNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYY 112
           P+PFDFSAM+GLLNDPSIKELAEQIAKDP+FN MAEQLQKT  GA AE++IP FDT QYY
Sbjct: 66  PSPFDFSAMTGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGATAEDAIPNFDTQQYY 125

Query: 113 STMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKP 172
           STMQQVMQNPQFMTMAE LG ALMQDPSMS M+ES TNP++KDQIEERM +I+EDPSLKP
Sbjct: 126 STMQQVMQNPQFMTMAEHLGTALMQDPSMSQMLESFTNPSQKDQIEERMTRIREDPSLKP 185

Query: 173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESI 232
           IL+EIESGGP+AMM+YWNDKDVLQKLGEAMGLAV  +A TS + +G +EAEE GNEDES+
Sbjct: 186 ILEEIESGGPAAMMRYWNDKDVLQKLGEAMGLAVSEEAGTSVETSGHEEAEEAGNEDESV 245

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           VHH ASVGD EGLKNALA+GADKDEEDSEGRTALHF+CGYGEVKCAQILLEAGA VDALD
Sbjct: 246 VHHCASVGDVEGLKNALASGADKDEEDSEGRTALHFSCGYGEVKCAQILLEAGATVDALD 305

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
           KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN+Q +VLKLLEKDAF
Sbjct: 306 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQQEVLKLLEKDAF 365

Query: 353 L 353
           L
Sbjct: 366 L 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2827572	344	AKR2B "ankyrin repeat-containi	0.838	0.860	0.726	8.2e-115
UNIPROTKB|Q746T3	141	GSU3435 "Ankyrin repeat protei	0.320	0.801	0.380	3.7e-15
TIGR_CMR|GSU_3435	141	GSU_3435 "ankyrin repeat prote	0.320	0.801	0.380	3.7e-15
TAIR|locus:2063804	240	AT2G03430 "AT2G03430" [Arabido	0.328	0.483	0.383	4.8e-15
UNIPROTKB|Q08E43	288	ASB8 "Ankyrin repeat and SOCS	0.322	0.395	0.382	4.7e-14
UNIPROTKB|E2QST3	288	ASB8 "Uncharacterized protein"	0.322	0.395	0.382	4.7e-14
UNIPROTKB|I3LRC3	288	ASB8 "Uncharacterized protein"	0.322	0.395	0.382	4.7e-14
RGD|1309246	288	Asb8 "ankyrin repeat and SOCS	0.322	0.395	0.382	4.7e-14
MGI|MGI:1925791	288	Asb8 "ankyrin repeat and SOCS	0.322	0.395	0.382	4.7e-14
UNIPROTKB|Q9H765	288	ASB8 "Ankyrin repeat and SOCS	0.322	0.395	0.382	4.7e-14

TAIR|locus:2827572 AKR2B "ankyrin repeat-containing 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 218/300 (72%), Positives = 254/300 (84%)

Query:    54 NPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYS 113
             N FDFS M+G+LNDPSIKELAEQIAKDP+FN +AEQLQ+++   + E  +P FD  QY  
Sbjct:    49 NAFDFSGMAGILNDPSIKELAEQIAKDPSFNQLAEQLQRSVPTGSHEGGLPNFDPQQYMQ 108

Query:   114 TMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPI 173
             TMQQVM+NP+F TMAERLGNAL+QDP MS  +E+L NP   +Q  ERMA++KEDP LKPI
Sbjct:   109 TMQQVMENPEFRTMAERLGNALVQDPQMSPFLEALGNPAASEQFAERMAQMKEDPELKPI 168

Query:   174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIV 233
             L EI++GGPSAMMKYWNDKDVL KLGEAMG+AVG D T +A+    +EAEE G E+ESIV
Sbjct:   169 LAEIDAGGPSAMMKYWNDKDVLAKLGEAMGIAVGADQTVAAE---PEEAEE-GEEEESIV 224

Query:   234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
             H TAS+GD EGLK ALA+G +KDEEDSEGRTALHFACGYGEV+CAQ+LL+AGAN +A+DK
Sbjct:   225 HQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFACGYGEVRCAQVLLDAGANANAIDK 284

Query:   294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 353
             NKNT LHYAAGYGRKECV+LLLENGAAVT QNMD K PIDVA+LN+Q DV+KLLEKDAFL
Sbjct:   285 NKNTPLHYAAGYGRKECVSLLLENGAAVTQQNMDNKNPIDVARLNNQLDVVKLLEKDAFL 344

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q746T3 GSU3435 "Ankyrin repeat protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 194 (73.4 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 43/113 (38%), Positives = 61/113 (53%)

Query:   237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
             A  GD + +++ +  GAD + +  +G+TALH+A   G+    + LLEAGA VD  D   +
Sbjct:    20 AKAGDVDAIRDLIGRGADLEAKSEKGKTALHYAAANGQAAAIRALLEAGAQVDPRDLEWH 79

Query:   297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
             T L  AA YG  ECV  LL  GA    +   G T +  A+ N   D L L++K
Sbjct:    80 TPLMLAANYGCNECVEDLLTAGADPLAKMKLGNTALTYAEANGHPDTLDLIKK 132

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3435 GSU_3435 "ankyrin repeat protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 194 (73.4 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 43/113 (38%), Positives = 61/113 (53%)

Query:   237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
             A  GD + +++ +  GAD + +  +G+TALH+A   G+    + LLEAGA VD  D   +
Sbjct:    20 AKAGDVDAIRDLIGRGADLEAKSEKGKTALHYAAANGQAAAIRALLEAGAQVDPRDLEWH 79

Query:   297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
             T L  AA YG  ECV  LL  GA    +   G T +  A+ N   D L L++K
Sbjct:    80 TPLMLAANYGCNECVEDLLTAGADPLAKMKLGNTALTYAEANGHPDTLDLIKK 132

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2063804 AT2G03430 "AT2G03430" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 4.8e-15, P = 4.8e-15
 Identities = 46/120 (38%), Positives = 72/120 (60%)

Query:   217 AGADEAEEVGN--EDE--SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGY 272
             + +DEA+ V N  +DE  + +H  AS+G+AE ++  L  GAD + +++ GRTALH+A   
Sbjct:    67 SSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAASK 126

Query:   273 GEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
             G ++ AQ+LL  GA ++  DK   T LH AA  G+ E    L+E GA +   +  G+T +
Sbjct:   127 GRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCEFLIEEGAEIDATDKMGQTAL 186

GO:0008150 "biological_process" evidence=ND

GO:0005618 "cell wall" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007140 "male meiosis" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

UNIPROTKB|Q08E43 ASB8 "Ankyrin repeat and SOCS box protein 8" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 44/115 (38%), Positives = 66/115 (57%)

Query:   233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
             +H    V DA+ ++  L  GA+ +  D   RTALH+A    E  C ++LLE GAN +ALD
Sbjct:    57 LHCACMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEA-CVEVLLEYGANPNALD 115

Query:   293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              N++T LH+AA     ECV  LLE+GA+V   + +  TP+  A +    + + +L
Sbjct:   116 GNRDTPLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSIL 170

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|E2QST3 ASB8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 196 (74.1 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 44/115 (38%), Positives = 66/115 (57%)

Query:   233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
             +H    V DA+ ++  L  GA+ +  D   RTALH+A    E  C ++LLE GAN +ALD
Sbjct:    57 LHCACMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEA-CVEVLLEYGANPNALD 115

Query:   293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              N++T LH+AA     ECV  LLE+GA+V   + +  TP+  A +    + + +L
Sbjct:   116 GNRDTPLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSIL 170

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|I3LRC3 ASB8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 196 (74.1 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 44/115 (38%), Positives = 66/115 (57%)

Query:   233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
             +H    V DA+ ++  L  GA+ +  D   RTALH+A    E  C ++LLE GAN +ALD
Sbjct:    57 LHCACMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEA-CVEVLLEYGANPNALD 115

Query:   293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              N++T LH+AA     ECV  LLE+GA+V   + +  TP+  A +    + + +L
Sbjct:   116 GNRDTPLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSIL 170

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

RGD|1309246 Asb8 "ankyrin repeat and SOCS box-containing 8" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 44/115 (38%), Positives = 66/115 (57%)

Query:   233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
             +H    V DA+ ++  L  GA+ +  D   RTALH+A    E  C ++LLE GAN +ALD
Sbjct:    57 LHCACMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEA-CVEVLLEYGANPNALD 115

Query:   293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              N++T LH+AA     ECV  LLE+GA+V   + +  TP+  A +    + + +L
Sbjct:   116 GNRDTPLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSIL 170

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

MGI|MGI:1925791 Asb8 "ankyrin repeat and SOCS box-containing 8" [Mus musculus (taxid:10090)]

 Score = 196 (74.1 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 44/115 (38%), Positives = 66/115 (57%)

Query:   233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
             +H    V DA+ ++  L  GA+ +  D   RTALH+A    E  C ++LLE GAN +ALD
Sbjct:    57 LHCACMVSDADCVELLLEKGAEVNALDGYNRTALHYAAERDEA-CVEVLLEYGANPNALD 115

Query:   293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              N++T LH+AA     ECV  LLE+GA+V   + +  TP+  A +    + + +L
Sbjct:   116 GNRDTPLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSIL 170

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|Q9H765 ASB8 "Ankyrin repeat and SOCS box protein 8" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 44/115 (38%), Positives = 66/115 (57%)

Query:   233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
             +H    V DA+ ++  L  GA+ +  D   RTALH+A    E  C ++LLE GAN +ALD
Sbjct:    57 LHCACMVSDADCVELLLEKGAEVNALDGYNRTALHYAAEKDEA-CVEVLLEYGANPNALD 115

Query:   293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              N++T LH+AA     ECV  LLE+GA+V   + +  TP+  A +    + + +L
Sbjct:   116 GNRDTPLHWAAFKNNAECVRALLESGASVNALDYNNDTPLSWAAMKGNLESVSIL 170

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036321001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (354 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00011610001	SubName- Full=Chromosome chr5 scaffold_322, whole genome shotgun sequence; (198 aa)			•						0.489

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-35
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-27
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-21
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-15
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-14
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-13
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-12
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-11
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	3e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	6e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-04
smart00248	30	smart00248, ANK, ankyrin repeats	4e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-04
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	7e-04
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	7e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.001
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.002
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.002
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  124 bits (313), Expect = 4e-35
 Identities = 51/121 (42%), Positives = 76/121 (62%)

Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
            +  + +H  AS G  E +K  L  GAD + +D++GRT LH A   G ++  ++LLE GA
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 346
           +V+A DK+ NT LH AA  G  + V LLL++GA V  ++ DG+TP+ +A  N   +V+KL
Sbjct: 65  DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124

Query: 347 L 347
           L
Sbjct: 125 L 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  103 bits (259), Expect = 4e-27
 Identities = 42/92 (45%), Positives = 56/92 (60%)

Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
           +  D +GRT LH A   G ++  ++LLE GA+V+A D +  T LH AA  G  E V LLL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 316 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           E GA V  ++ DG TP+ +A  N   DV+KLL
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 89.6 bits (223), Expect = 2e-22
 Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 2/92 (2%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H  A  G+ E +K  L  GAD +  D++  TALH A   G ++  ++LLE GA+V+A DK
Sbjct: 2   HLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDK 59

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQN 325
           + NTALH AA  G  E V LLLE+GA + L++
Sbjct: 60  DGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.4 bits (217), Expect = 3e-21
 Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             GAD      N+  + +H  A  G  E +K  L  GAD +  D +G T LH A   G +
Sbjct: 28  ENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNL 86

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
              ++LL+ GA+V+A DK+  T LH AA  G  E V LLL
Sbjct: 87  DVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 85.4 bits (212), Expect = 7e-21
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 266 LHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQN 325
           LH A   G ++  ++LLE GA+V+    + +TALH AA  G  E V LLLE+GA V  ++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL--GDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 326 MDGKTPIDVAKLNSQHDVLK-LLEKDA 351
            DG T + +A  N   +++K LLE  A
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 74.1 bits (181), Expect = 3e-15
 Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 8/125 (6%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK-----CAQILLEAGANV 288
           H  AS GD + +K  LA+GAD + +D++G T LH A   G         A++LLEAGA++
Sbjct: 78  HSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL 137

Query: 289 DAL---DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 345
           D     D++ NT LH+AA  G  + V LLLE GA    +N  G T +D A  N + +++K
Sbjct: 138 DVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVK 197

Query: 346 LLEKD 350
           LL   
Sbjct: 198 LLLDK 202

Length = 235

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 72.2 bits (177), Expect = 8e-14
 Identities = 46/136 (33%), Positives = 61/136 (44%), Gaps = 17/136 (12%)

Query: 213 SADNAGADEAEEVGNE---DESIVH-------HTASVGDAEGLKNALAAGADKDEEDSEG 262
           + +N  A     +  E   D  + H         A+ GDA G +  L  GAD +  D +G
Sbjct: 56  ATENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDG 115

Query: 263 RTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL------- 315
           RT LH AC  G V+  ++LLE GA+   LDK+  T L  A   G +E V LL        
Sbjct: 116 RTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHF 175

Query: 316 ENGAAVTLQNMDGKTP 331
           E GA     +  GK P
Sbjct: 176 ELGANAKPDSFTGKPP 191

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 63.0 bits (154), Expect = 4e-13
 Identities = 25/54 (46%), Positives = 34/54 (62%)

Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
           GRTALH A   G ++  + LLE G +++  D++ NTALH AA  G  E + LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 68.8 bits (168), Expect = 8e-13
 Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 4/110 (3%)

Query: 241 DAEGLKNALAAGADKDEED-SEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
           +AE  K  L+ GAD + +D  +G TALH+A    + +  ++LL  GANV+  DK  N+ L
Sbjct: 146 EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205

Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTP--IDVAKLNSQHDVLKLL 347
           H+A  +  K  V +LLENGA+   ++  G TP  I V      +D+LKLL
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKD-YDILKLL 254

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 18/130 (13%)

Query: 236 TASVGDAEGLKNALAAGADKDEEDSEGRTALHFA--CGYGEVKCAQILLEAGANVDAL-- 291
           +        ++  L  GA+ + ++S+G   LH        ++K  ++L++ G +++A   
Sbjct: 115 SKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174

Query: 292 --------------DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
                         D    T LHYA      E V  LL+ GA   L N  G TP+ +A L
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAIL 234

Query: 338 NSQHDVLKLL 347
           N+  ++ KLL
Sbjct: 235 NNNKEIFKLL 244

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 66.9 bits (163), Expect = 3e-12
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
           E ++ +H+    GD E +K     GAD + ED  G   +H A  +      ++LLE GA 
Sbjct: 123 ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY 182

Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            +  D N  + LH AA YG   C+ LL+++G  +  +  +G TP+  A ++++   ++LL
Sbjct: 183 ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELL 241

Length = 434

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 55/187 (29%), Positives = 71/187 (37%), Gaps = 38/187 (20%)

Query: 192 KDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA 251
           K+ LQ   E   L VG       DN G    E       S +   AS G+A  L+  L A
Sbjct: 495 KNFLQHHKELHDLNVG---DLLGDNGG----EHDDPNMASNLLTVASTGNAALLEELLKA 547

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL-------HY--- 301
             D D  DS+GRT LH A   G   C  +LL+   NV   D N NTAL       H+   
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIF 607

Query: 302 ---------------------AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ 340
                                AA       +  LL+ G  V  ++  G T + VA     
Sbjct: 608 RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDH 667

Query: 341 HDVLKLL 347
            D+++LL
Sbjct: 668 VDMVRLL 674

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 7/125 (5%)

Query: 216 NAGADEAEEVGNEDESIVH---HTASVGDAEGLKNALAAGADKDEEDSEGRTALH-FACG 271
            AGAD     G   ++ +H   H +S    + ++  L AGAD +  +  G T LH +   
Sbjct: 35  AAGADV-NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYN 93

Query: 272 YGEVKCAQILLEAGANVDALDKNKNTALH-YAAGYGRKECVA-LLLENGAAVTLQNMDGK 329
              +   ++L++AGA+V+A DK   T LH Y +G+     V  LLL  GA V   ++ G 
Sbjct: 94  ATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGM 153

Query: 330 TPIDV 334
           TP+ V
Sbjct: 154 TPLAV 158

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
           + +H  A  G+ E +K  L  GAD + +D +G TALH A   G ++  ++LLE GA+++ 
Sbjct: 30  TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Query: 291 LD 292
            D
Sbjct: 90  KD 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 216 NAGADEAEEVGNEDESIVHHTASV--GDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           +AGAD    V +   S++HH        A  ++  + AG D    D  G T LH      
Sbjct: 175 DAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGS 233

Query: 274 EVKCAQI--LLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP 331
             K + +  LL AG +++A ++   T LHYAA +        L+  GA +   + DG TP
Sbjct: 234 SCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTP 293

Query: 332 IDVAKLNSQHDVLKLLEKDAFL 353
           + +   N+    +      A L
Sbjct: 294 LSLMVRNNNGRAV-----RAAL 310

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 281 LLEAG-ANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           LLE G  +++A D N NT LH AA YG  E V  LL+ G  + L++ DG T +D+A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 241 DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQI---LLEAGANVDALDKNKNT 297
             E ++  LAAGAD +     G+T LH    Y   K   I   LLEAGA+V+A ++   T
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85

Query: 298 ALHYAAGYGRKE-CVALLLENGAAVTLQNMDGKTPIDV--AKLNSQHDVLKLL 347
            LH           + LL++ GA V  ++  G+TP+ V  +  N    V++LL
Sbjct: 86  PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLL 138

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 58.3 bits (140), Expect = 7e-10
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 11/201 (5%)

Query: 127 MAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMM 186
           +   L   L         +           + E + K+  D  L     +     P    
Sbjct: 23  LLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLD--GRLPLHSA 80

Query: 187 KYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLK 246
               D  +++ L  +        A  +A +A  D    +   + +       V  A+ L 
Sbjct: 81  ASKGDDKIVKLLLAS-------GADVNAKDADGDTPLHLAALNGNPPEGNIEV--AKLLL 131

Query: 247 NALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYG 306
            A A     +  D +G T LH+A   G+    ++LLEAGA+ ++ +    TAL  AA  G
Sbjct: 132 EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNG 191

Query: 307 RKECVALLLENGAAVTLQNMD 327
           R E V LLL+ G  ++L   +
Sbjct: 192 RIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           GAD   +  ++  + +H+     D    +  L+ GA+ +  D    + LH A  +     
Sbjct: 157 GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPI 216

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRK-ECVALLLENGAAVTLQN-MDGKTPIDVA 335
             ILLE GA+ DA DK  NT LH + GY +  + + LLLE+G  V  ++ + G T +  +
Sbjct: 217 VHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS 276

Query: 336 KLNSQHDVLKLL 347
            + S+   LKLL
Sbjct: 277 -IKSE-RKLKLL 286

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 32/105 (30%), Positives = 59/105 (56%)

Query: 243 EGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA 302
           + +K  L  G D + +D+E +T LH+A   G+++  ++L E GA+V+  D N    +H A
Sbjct: 105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA 164

Query: 303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             +   + + LLLE GA   +++ +G++P+  A     +  +KLL
Sbjct: 165 IKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLL 209

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 24/52 (46%), Positives = 29/52 (55%)

Query: 296 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            TALH AA  GR E V  LLE G  +   + DG T + +A  N   +VLKLL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA-CGYGEVKCAQILLEAGAN 287
           D++ +H+ A   +   +   L  GAD +    +  TALHFA CG       + L++ GAN
Sbjct: 375 DKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN 434

Query: 288 VDALDKNKNTALHYAAGYGRK-ECVALLLENGAAVTLQNMDGKTPIDVA 335
           V++ +K+ +T LHYA     K + + +LL+NGA V   N+  + P+ +A
Sbjct: 435 VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGY-GEVKCAQILLEAGAN 287
           + S +HH     +   +   L  GA  D  D  G T LH + GY  +    ++LLE G +
Sbjct: 201 NNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD 260

Query: 288 VDALDKNKN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           V+A       TALH +    RK  + LLLE GA +   N    TP+  A
Sbjct: 261 VNAKSYILGLTALHSSIKSERK--LKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           +G T LH A   G ++  ++LLEAGA+V+A DK
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
           +K  L  GA  + +D+ G + LH A  YG+  C ++L++ G ++    KN  T LH A  
Sbjct: 173 IKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII 232

Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           + R      LL N A++  Q++DG TP+  A
Sbjct: 233 HNRS--AIELLINNASINDQDIDGSTPLHHA 261

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEV-----KCAQILLEAGANVDALDKNKNTAL 299
           +K  L  GAD +       T LH+            +  ++LLE GANV+A D N  T L
Sbjct: 51  VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPL 110

Query: 300 HYAAGY--GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
            YA          V  LL+NGA V ++N DG+  + +  L S    LK+L+
Sbjct: 111 LYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLY-LESNKIDLKILK 160

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 2/101 (1%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA-AGYGR 307
           L  GA+ +  D   +T +H+A     V     LL+ GA+++AL +   TALH+A  G   
Sbjct: 362 LELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNP 421

Query: 308 KECVALLLENGAAVTLQNMDGKTPIDVA-KLNSQHDVLKLL 347
              V  L++ GA V  +N D  TP+  A K N + DV+++L
Sbjct: 422 YMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEML 462

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 241 DAEGLKNALAAGADKDEEDSEGRTALHFACGY--GEVKCAQILLEAGANVDALDKNKNTA 298
           + E L+  + AGAD    D   R+ LH          +  + L+ AG +  A D   NT 
Sbjct: 166 NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTP 225

Query: 299 LHYAAGYG--RKECVALLLENGAAVTLQNMDGKTPIDVA-KLNSQHDVLKLL 347
           LH  A     ++  V  LL  G ++  +N  G+TP+  A   N+     +L+
Sbjct: 226 LHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLI 277

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query: 274 EVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPID 333
           E+  A++LLE GA+V+A D    T +HYAA  G  + V LLL  GA V +  +D  + ++
Sbjct: 157 ELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLE 216

Query: 334 VAKLNSQHDVLK 345
            A  +   D +K
Sbjct: 217 CAVDSKNIDTIK 228

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA 302
            D  G T LH A  YG ++  Q LL+ G +++  D +  TAL  A
Sbjct: 12  TDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQN 325
           + NT LH AA  G  E V LLLE GA V  ++
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
           N  ES +H+ A  GD   +K  +  G     +   G T LH A  +   + A  LL   A
Sbjct: 188 NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHN--RSAIELLINNA 245

Query: 287 NVDALDKNKNTALHYAAGYG-RKECVALLLENGAAVTLQNMDGKTPIDVA-KLNSQHDVL 344
           +++  D + +T LH+A       + + +LL + A +++++  G+ PID A K  ++  V+
Sbjct: 246 SINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVI 305

Query: 345 KLLEKDAFL 353
           K +  +A L
Sbjct: 306 KDIIANAVL 314

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 218 GADEAEEVGNEDE-SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
           GAD   ++ N D+ S +H    +GD +G++  +   A  D ED  G T L  A   G++ 
Sbjct: 125 GADP--DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIA 182

Query: 277 CAQILLEAGANVDALDKNKN-TALHYAAGYGRKECVALLLENGA 319
             ++LL++GAN+D   KN    AL YA    + + V L ++ GA
Sbjct: 183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGA 226

Length = 413

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
           G   + +D  G T LH+A      +  + LL+ GAN + ++K  +T LH A     KE  
Sbjct: 182 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIF 241

Query: 312 ALLLENGAAV 321
            LLL NG ++
Sbjct: 242 KLLLNNGPSI 251

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG-EVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
           L  GAD + ++ +G T L+     G + +  + L+  GA+V+A D+   T LH A+   R
Sbjct: 294 LERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDR 353

Query: 308 -KECVALLLENGAAVTLQNMDGKTPIDVA 335
            K+ V  LLE GA V  ++   KTPI  A
Sbjct: 354 NKDIVITLLELGANVNARDYCDKTPIHYA 382

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 9/112 (8%)

Query: 243 EGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA 302
           + +K  +A GAD D  +++  + LH A   G++K  ++L++  A +D  D    T L  A
Sbjct: 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA 175

Query: 303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL-----NSQHDVLKLLEK 349
              G      +LL++GA +   +  GK    VA L     N++ D+++L  K
Sbjct: 176 MAKGDIAICKMLLDSGANI---DYFGKNG-CVAALCYAIENNKIDIVRLFIK 223

Length = 413

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 218 GADEAEEVGNEDESIVHHTASVG---DAEGLKNALAAGADKDEEDSEGRTALH-FACGYG 273
           GAD   +  + + S +HH  S     + E LK  + +G+   EED +G+  LH + C + 
Sbjct: 76  GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFN 135

Query: 274 -EVKCAQILLEAGANVDALDKNKNTALH-YAAGYGRKECVALLLENGAAVTLQNMDGKTP 331
             +   ++L+++G +    D + N  L+ Y   +  K+    L   G  +   N  G   
Sbjct: 136 VRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNC 195

Query: 332 IDVAKLN 338
            D+ K  
Sbjct: 196 YDLIKFR 202

Length = 209

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.2 bits (92), Expect = 6e-05
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDA 290
           +G T LH A   G ++  ++LLE GA+++A
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL 282
           + +H  A  G  E +K  L  G D +  D +G TALH A   G ++  ++LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 22/82 (26%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 272 YGEVKCAQILLEAGANVDALDKNKN-TALHYAAGYGRK---ECVALLLENGAAVTLQNMD 327
              V+  + L+E GA+V+   ++ N +ALH+   + +    E + +L+++G+++T ++ D
Sbjct: 63  KVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDED 122

Query: 328 GKTPIDV--AKLNSQHDVLKLL 347
           GK  + +     N + +V+KLL
Sbjct: 123 GKNLLHMYMCNFNVRINVIKLL 144

Length = 209

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDA 290
           +GRT LH A   G ++  ++LL+ GA+++A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAV 321
           + NT LH AA  G  E V LLLE+GA +
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 266 LHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR-----KECVALLLENGAA 320
           L+ A     +   +ILL+ GA++++  KN +T LHY +         KE V LLLE GA 
Sbjct: 39  LYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN 98

Query: 321 VTLQNMDGKTPIDVA---KLNSQHDVLKLLEKDA 351
           V   + +G TP+  A   K NS   V  LL+  A
Sbjct: 99  VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGA 132

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 241 DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV-DALDKNKNTAL 299
           D+E +K  +  GA  D +  +  + LH A   G+VK  + LL+ G    D   K+  T L
Sbjct: 47  DSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL 106

Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           H A    + + + LL+  GA   + N D  +P+ +A +      ++LL  
Sbjct: 107 HLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156

Length = 413

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTL 323
           +  T LH AA  G  E V LLL+ GA +  
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGE---VKCAQILLEAGANVDALDKNKNTALHYAAGY 305
           + AGAD + +D  GRT LH     G     K  ++LL  GA+V+ALD    T L      
Sbjct: 104 IKAGADVNAKDKVGRTPLH-VYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS 162

Query: 306 GRK--ECVALLLENGAAVTLQNMDGKTPIDV 334
                E + LL++ GA V   +   ++ +  
Sbjct: 163 RNANVELLRLLIDAGADVYAVDDRFRSLLHH 193

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 274 EVKCAQILLEAGANVDALDKNKNTALHYAAGY-GRKECVALLLENGAAVTLQNMDGKTPI 332
           +++ + +L +AG +V+++D  KNT LH+A+        V  LLE GA V  +N+ G+TP+
Sbjct: 252 DLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 259 DSEGRTALHFACGYGE----VKCAQILLEAGANVDALDK-NKNTALHYAAGYGRKECVAL 313
           D  G+  +H A    E     +    L+E GA+++A +    +TALH AA     +    
Sbjct: 57  DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEW 116

Query: 314 LL-ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           L  + G  +   N D K+P ++A  N    ++++L +
Sbjct: 117 LCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILRE 153

Length = 169

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH-DVLK 345
           +++ +DK   T LH A  Y ++  V+LLLE+G+ V +++ +G T I +A   S++ ++LK
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLK 503

Query: 346 LL 347
           +L
Sbjct: 504 ML 505

Length = 661

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEE-DSEGRTALHFACGYGEVKCAQILLEAGANV 288
           ES +H     GD + ++  L  G   D+    +G T LH A    ++   ++L+  GA+ 
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128

Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           D  + +K + LH A   G  + + LL+++ A + +++  G TP+ +A       + K+L
Sbjct: 129 DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKML 187

Length = 413

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 17/116 (14%)

Query: 223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL 282
           E V   +  ++H  A+    +     LA      E  + G TALH A      +  ++LL
Sbjct: 92  EYVDAVEAILLHLLAA--FRKSGPLELANDQYTSEF-TPGITALHLAAHRQNYEIVKLLL 148

Query: 283 EAGANVDA-------LDKNKNTALHY-------AAGYGRKECVALLLENGAAVTLQ 324
           E GA+V A       +      + ++       AA  G    VALL E+ A +   
Sbjct: 149 ERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA 204

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 19/54 (35%), Positives = 26/54 (48%)

Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
           A   D   +K  L  G + D ED +G TAL  A     V   ++L+  GA+VD 
Sbjct: 630 AKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683

Length = 823

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 232 IVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
           I++H AS+ D         A  D           L  A    ++   + LL+ G NVD+ 
Sbjct: 609 ILYHFASISDPH-------AAGD----------LLCTAAKRNDLTAMKELLKQGLNVDSE 651

Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMD 327
           D    TAL  A      + V LL+ NGA V   N D
Sbjct: 652 DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD 687

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG--EVKCAQILLEAGANVDALDKNKNTALHYAAGY- 305
           L  GAD +  D  G T L          V+  ++L++AGA+V A+D    + LH+     
Sbjct: 139 LRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF 198

Query: 306 -GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH---DVLKLLEK 349
             R   V  L+  G      +M G TP+      S      VL LL  
Sbjct: 199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA 246

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GAD + +D    T +H+A   G  K   +LL  GA+V+ +  +  + L  A      
Sbjct: 165 LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNI 224

Query: 309 ECVALLLEN 317
           + +  +++N
Sbjct: 225 DTIKAIIDN 233

Length = 682

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 275 VKCAQILLEAGANVDALDKNKN----TALHYAAGYGRK-ECVALLLENGAAVTLQNMDGK 329
               ++ +  GANV+ LD   +    T L     Y    + V +L+ENGA +  +N DG+
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110

Query: 330 TPI 332
           TP+
Sbjct: 111 TPL 113

Length = 489

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 241 DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALH 300
           D   ++  L  G   +E D +G   LH A      +   +LL  GA+ +A DK   T L+
Sbjct: 51  DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLY 110

Query: 301 YAAGYGRK--ECVALLLENGAAV 321
           Y +G   +  E + LL++ GA +
Sbjct: 111 YLSGTDDEVIERINLLVQYGAKI 133

Length = 446

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 20/133 (15%)

Query: 241 DAEGLKNALAAGADKDEEDSEGRTALH--FACGYGEVKCAQILLEAGANVDALDKNKNTA 298
           D   + + L  G     +DS GRT LH             ++L E G +++  D   NT 
Sbjct: 296 DISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTV 355

Query: 299 LH-YAAGYG-------------RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ---- 340
           LH Y +                R + +  L+  GA +T  N  G TP+      +Q    
Sbjct: 356 LHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMY 415

Query: 341 HDVLKLLEKDAFL 353
           +D++  L  D  L
Sbjct: 416 YDIIDCLISDKVL 428

Length = 764

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA 269
             G  +         + +H  A  G  E ++  L  G D +  DS+G TAL  A
Sbjct: 3   EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 280 ILLEAGANVDALDKNKNTALH--YAAGY-GRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
           IL+E GA+++  + +  T L+   + GY    E +  ++ENGA  TL + DG T + V  
Sbjct: 94  ILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL 153

Query: 337 LNSQH---DVLKLL 347
            ++ H   +++KLL
Sbjct: 154 QSNHHIDIEIIKLL 167

Length = 489

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.95
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.91
PHA02791	284	ankyrin-like protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02875	413	ankyrin repeat protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02875	413	ankyrin repeat protein; Provisional	99.89
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.89
PHA02878	477	ankyrin repeat protein; Provisional	99.89
PHA02874	434	ankyrin repeat protein; Provisional	99.88
KOG0508	615	consensus Ankyrin repeat protein [General function	99.88
PHA02878	477	ankyrin repeat protein; Provisional	99.88
PHA02874	434	ankyrin repeat protein; Provisional	99.88
PHA03100	480	ankyrin repeat protein; Provisional	99.88
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.87
PHA02859	209	ankyrin repeat protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.86
PHA03095	471	ankyrin-like protein; Provisional	99.86
PHA03100	480	ankyrin repeat protein; Provisional	99.86
PHA03095	471	ankyrin-like protein; Provisional	99.86
PHA02946	446	ankyin-like protein; Provisional	99.86
KOG0510	929	consensus Ankyrin repeat protein [General function	99.86
PHA02795	437	ankyrin-like protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.85
PHA02989	494	ankyrin repeat protein; Provisional	99.85
PHA02798	489	ankyrin-like protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
KOG0508	615	consensus Ankyrin repeat protein [General function	99.85
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
PHA02946	446	ankyin-like protein; Provisional	99.84
PHA02876	682	ankyrin repeat protein; Provisional	99.83
PHA02798	489	ankyrin-like protein; Provisional	99.83
PHA02989	494	ankyrin repeat protein; Provisional	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02876	682	ankyrin repeat protein; Provisional	99.82
PHA02730	672	ankyrin-like protein; Provisional	99.82
PHA02917	661	ankyrin-like protein; Provisional	99.82
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.81
PHA02795	437	ankyrin-like protein; Provisional	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.8
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.79
KOG0510	929	consensus Ankyrin repeat protein [General function	99.78
PHA02730	672	ankyrin-like protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.77
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.77
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.76
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.74
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.73
PHA02736	154	Viral ankyrin protein; Provisional	99.72
PHA02792	631	ankyrin-like protein; Provisional	99.71
PHA02741	169	hypothetical protein; Provisional	99.71
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.7
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.69
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.69
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.69
PHA02792	631	ankyrin-like protein; Provisional	99.69
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.69
KOG0514	452	consensus Ankyrin repeat protein [General function	99.67
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.66
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.59
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.58
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.57
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.57
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.54
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.54
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.51
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.4
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.39
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.29
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.26
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.12
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.98
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.97
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.96
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.95
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.93
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.91
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.9
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.89
KOG0522	560	consensus Ankyrin repeat protein [General function	98.87
PF13606	30	Ank_3: Ankyrin repeat	98.82
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.78
PF13606	30	Ank_3: Ankyrin repeat	98.71
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.65
KOG0522	560	consensus Ankyrin repeat protein [General function	98.61
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.58
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.57
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.55
KOG0511	516	consensus Ankyrin repeat protein [General function	98.34
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.34
KOG2384	223	consensus Major histocompatibility complex protein	98.3
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.25
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.17
KOG0511	516	consensus Ankyrin repeat protein [General function	98.13
KOG2384	223	consensus Major histocompatibility complex protein	98.13
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.91
KOG2505	591	consensus Ankyrin repeat protein [General function	97.37
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.04
KOG2505	591	consensus Ankyrin repeat protein [General function	96.9
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.85
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.32
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.04
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.5
smart00727	41	STI1 Heat shock chaperonin-binding motif.	92.18
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	89.64
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.93
PTZ00458	90	acyl CoA binding protein; Provisional	82.7
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	81.56
KOG0817	142	consensus Acyl-CoA-binding protein [Lipid transpor	81.27

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.1e-28  Score=204.86  Aligned_cols=131  Identities=34%  Similarity=0.490  Sum_probs=112.3

Q ss_pred             hhhhcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 018595          221 EAEEVGNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL  299 (353)
Q Consensus       221 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpL  299 (353)
                      ..+..+..||||||+||..|+.++|+.|+.. |+|+|..+..|.|+||||+..|+.+|+++|+++|+.++.+|..|.|||
T Consensus        64 ~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtpl  143 (226)
T KOG4412|consen   64 KPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPL  143 (226)
T ss_pred             CCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchh
Confidence            3455588888888888888888888888887 888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       300 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |-|+..|.++++++|+..|+.+|.+|+.|+||||.|...|+.++..+|+++|
T Consensus       144 HRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g  195 (226)
T KOG4412|consen  144 HRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG  195 (226)
T ss_pred             HHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhc
Confidence            8888888888888888888888888888888888888888888888888765

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.2e-28  Score=203.15  Aligned_cols=128  Identities=32%  Similarity=0.487  Sum_probs=120.5

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHH
Q 018595          224 EVGNEDESIVHHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA-GANVDALDKNKNTALHY  301 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll-~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~-gadi~~~d~~G~TpLh~  301 (353)
                      +.+.+|+|||||||+.|+.++|.+|+ ..+..+|.+|..||||||+||..|+.++|+.|+.+ |+|+|..+..|+|+|||
T Consensus        33 r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHy  112 (226)
T KOG4412|consen   33 RDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHY  112 (226)
T ss_pred             cccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehh
Confidence            34668999999999999999999999 56788999999999999999999999999999988 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |+..|+.+|+++|+++|+.++++|..|.||||-|+.-|..+++++|+..+
T Consensus       113 AagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen  113 AAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             hhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            99999999999999999999999999999999999999999999998754

>PHA02791 ankyrin-like protein; Provisional

Probab=99.91  E-value=8.2e-24  Score=195.77  Aligned_cols=136  Identities=22%  Similarity=0.205  Sum_probs=108.6

Q ss_pred             hhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 018595          211 TTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA  290 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~  290 (353)
                      ...+...+.+...   ..++||||+|+..|+.+++++|+..|++++.+|..|+||||+||..|+.+++++|+++|++++.
T Consensus        46 v~~Ll~~ga~~n~---~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~  122 (284)
T PHA02791         46 VCTLLNAGALKNL---LENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF  122 (284)
T ss_pred             HHHHHHCcCCCcC---CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            3445555554422   2467888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCC-cHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          291 LDKNKN-TALHYAAGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       291 ~d~~G~-TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ++..|+ ||||+|+..|+.++|++|+++|.+.  .| ..|.||||+|+.+|+.+++++|+++|
T Consensus       123 ~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~g  183 (284)
T PHA02791        123 YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYM  183 (284)
T ss_pred             cCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCC
Confidence            888774 8888888888888888888887543  23 24788999999999889988888876

>PHA02791 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=193.73  Aligned_cols=153  Identities=17%  Similarity=0.152  Sum_probs=129.7

Q ss_pred             CHHHHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 018595          181 GPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS  260 (353)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~  260 (353)
                      .+..++...++.++++.|.                ..+.+. ...+..|+||||+|+..|+.+++++|++.|++++.++.
T Consensus        63 TpLh~Aa~~g~~eiV~lLL----------------~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~  125 (284)
T PHA02791         63 FPLHQAATLEDTKIVKILL----------------FSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK  125 (284)
T ss_pred             CHHHHHHHCCCHHHHHHHH----------------HCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCC
Confidence            4445555555555555553                333333 44578899999999999999999999999999999988


Q ss_pred             CCC-cHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH-HHHHHH
Q 018595          261 EGR-TALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP-IDVAKL  337 (353)
Q Consensus       261 ~g~-t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d-~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp-L~~A~~  337 (353)
                      .|+ ||||+|+..|+.++|++|++++.+.  .| ..|+||||+|+.+|+.+++++|+++|++++.+|..|.|| ||+|+.
T Consensus       126 ~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~  203 (284)
T PHA02791        126 TGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID  203 (284)
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHH
Confidence            885 8999999999999999999987654  23 258999999999999999999999999999999999987 999999


Q ss_pred             cCcHHHHHHHHhcCC
Q 018595          338 NSQHDVLKLLEKDAF  352 (353)
Q Consensus       338 ~g~~~iv~~Ll~~~~  352 (353)
                      +|+.++|++|+++|.
T Consensus       204 ~~~~e~v~lLl~~Ga  218 (284)
T PHA02791        204 NKDLEMLQALFKYDI  218 (284)
T ss_pred             cCCHHHHHHHHHCCC
Confidence            999999999999873

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=5.3e-23  Score=182.96  Aligned_cols=129  Identities=19%  Similarity=0.288  Sum_probs=114.3

Q ss_pred             hcCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCc
Q 018595          224 EVGNEDESIVHHTASVG--DAEGLKNALAAGADKDEED-SEGRTALHFACGY---GEVKCAQILLEAGANVDALDKNKNT  297 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~~g--~~~~v~~Ll~~g~d~~~~d-~~g~t~Lh~Aa~~---g~~~~v~~Ll~~gadi~~~d~~G~T  297 (353)
                      ..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|+||||+|+..   ++.+++++|+++|++++.+|..|+|
T Consensus        46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~T  125 (209)
T PHA02859         46 DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKN  125 (209)
T ss_pred             ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCC
Confidence            34677999999999854  8999999999999999886 5899999998764   4789999999999999999999999


Q ss_pred             HHHHHHH--cCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-HHHcCcHHHHHHHHhcCC
Q 018595          298 ALHYAAG--YGRKECVALLLENGAAVTLQNMDGKTPIDV-AKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       298 pLh~A~~--~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~-A~~~g~~~iv~~Ll~~~~  352 (353)
                      |||+|+.  .++.+++++|+++|++++.+|.+|.||||. |+..++.+++++|+++|.
T Consensus       126 pLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga  183 (209)
T PHA02859        126 LLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGI  183 (209)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCC
Confidence            9999876  468999999999999999999999999995 667889999999998874

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.90  E-value=7.5e-23  Score=200.10  Aligned_cols=130  Identities=23%  Similarity=0.296  Sum_probs=123.5

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        96 ~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A  175 (413)
T PHA02875         96 DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA  175 (413)
T ss_pred             ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence            34456799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHhcCC
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGK-TPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +..|+.+++++|+++|++++..+..|. ||+|+|+.+|+.+++++|+++|.
T Consensus       176 ~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ga  226 (413)
T PHA02875        176 MAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGA  226 (413)
T ss_pred             HHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCc
Confidence            999999999999999999999998875 88999999999999999999874

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=4.6e-23  Score=177.35  Aligned_cols=128  Identities=25%  Similarity=0.346  Sum_probs=118.5

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHhcCC----HHHHHHHHHcCCCCCCCC
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALA------AGADKDEEDSEGRTALHFACGYGE----VKCAQILLEAGANVDALD  292 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~------~g~d~~~~d~~g~t~Lh~Aa~~g~----~~~v~~Ll~~gadi~~~d  292 (353)
                      ...+..|.|+||+|+..|+.++++.|+.      .|++++.+|..|+||||+|+..|+    .+++++|+..|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            3447789999999999999999999864      368899999999999999999998    589999999999999998


Q ss_pred             C-CCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          293 K-NKNTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       293 ~-~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      . .|+||||+|+..++.+++++|+. .|++++.+|..|+||||+|+..++.+++++|++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            5 89999999999999999999998 5999999999999999999999999999999875

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.90  E-value=1.6e-23  Score=203.53  Aligned_cols=124  Identities=30%  Similarity=0.427  Sum_probs=71.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEED-SEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG  304 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d-~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~  304 (353)
                      |.+|.|+||+||.+++++++++|+++|+++|... .-+.|||||||.+|+..+|.+|+++|||++.+|..|.||||+|+.
T Consensus        75 D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~  154 (600)
T KOG0509|consen   75 DREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQ  154 (600)
T ss_pred             CcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHH
Confidence            4455555555555555555555555555555554 455555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Q 018595          305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  349 (353)
Q Consensus       305 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  349 (353)
                      .|+.-+|-+||.+|+|++.+|.+|+|||++|+..|+...+.+|++
T Consensus       155 ~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  155 FGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLK  199 (600)
T ss_pred             hCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHH
Confidence            555555555555555555555555555555555555544444443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=7.3e-23  Score=175.57  Aligned_cols=128  Identities=20%  Similarity=0.267  Sum_probs=117.3

Q ss_pred             cCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHH---HHHHHHHcCCCCCCCC-CCCC
Q 018595          225 VGNEDESIVHHTASVGDA----EGLKNALAAGADKDEEDSEGRTALHFACGYGEVK---CAQILLEAGANVDALD-KNKN  296 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~----~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~---~v~~Ll~~gadi~~~d-~~G~  296 (353)
                      .+..+.+.||+||+.|++    +++++|++.|++++.+|..|+||||+||.+|+.+   ++++|+..|++++.+| ..|+
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            456788999999999998    5666788899999999999999999999998865   4899999999999998 5899


Q ss_pred             cHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          297 TALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       297 TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ||||+|+.+|+.+++++|+. .|++++.+|..|+||||+|+..++.+++++|++++.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999995 799999999999999999999999999999999763

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.6e-22  Score=195.28  Aligned_cols=156  Identities=23%  Similarity=0.314  Sum_probs=134.3

Q ss_pred             CCHHHHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CC
Q 018595          180 GGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKD-EE  258 (353)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~-~~  258 (353)
                      ..+.+++...++.++++.|.+                .|... ...+..+.||||+|+..|+.++|++|++.|.+.+ ..
T Consensus        36 ~tpL~~A~~~~~~~~v~~Ll~----------------~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~   98 (413)
T PHA02875         36 ISPIKLAMKFRDSEAIKLLMK----------------HGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVF   98 (413)
T ss_pred             CCHHHHHHHcCCHHHHHHHHh----------------CCCCc-cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccc
Confidence            345555556666666666543                22222 2234668899999999999999999999998765 44


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Q 018595          259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN  338 (353)
Q Consensus       259 d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~  338 (353)
                      +..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+
T Consensus        99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~  178 (413)
T PHA02875         99 YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAK  178 (413)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCC
Q 018595          339 SQHDVLKLLEKDAF  352 (353)
Q Consensus       339 g~~~iv~~Ll~~~~  352 (353)
                      |+.+++++|+++|.
T Consensus       179 g~~eiv~~Ll~~ga  192 (413)
T PHA02875        179 GDIAICKMLLDSGA  192 (413)
T ss_pred             CCHHHHHHHHhCCC
Confidence            99999999999863

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.89  E-value=4.1e-23  Score=200.71  Aligned_cols=138  Identities=31%  Similarity=0.376  Sum_probs=128.2

Q ss_pred             hhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 018595          214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK  293 (353)
Q Consensus       214 ~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~  293 (353)
                      +...+.++...-+.-+.||||+|+++|++.+|..|+++|+|++.+|.+|.++||.|+.+|+.-+|-+||.+|+|+|.+|.
T Consensus        97 li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~  176 (600)
T KOG0509|consen   97 LISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN  176 (600)
T ss_pred             HHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC
Confidence            35566666555668899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          294 NKNTALHYAAGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       294 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|+||||+|+..|+...+..|+..|+.+...| +.|+||||+|+..|+..++.+|++.|
T Consensus       177 ~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~  235 (600)
T KOG0509|consen  177 NGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGG  235 (600)
T ss_pred             CCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcC
Confidence            99999999999999888999999999999988 89999999999999999999766653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.89  E-value=5.6e-22  Score=197.57  Aligned_cols=124  Identities=30%  Similarity=0.358  Sum_probs=109.1

Q ss_pred             CCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 018595          226 GNE-DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG  304 (353)
Q Consensus       226 ~~~-g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~  304 (353)
                      +.. |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.
T Consensus       164 ~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~  243 (477)
T PHA02878        164 DRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVG  243 (477)
T ss_pred             CCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            344 8899999999999999999999999999889999999999999999999999999999999999999999999987


Q ss_pred             c-CCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          305 Y-GRKECVALLLENGAAVTLQNM-DGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       305 ~-g~~~~v~~Ll~~gad~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      . ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|+++|
T Consensus       244 ~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~g  290 (477)
T PHA02878        244 YCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYG  290 (477)
T ss_pred             hcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCC
Confidence            5 688999999999999998876 799999999  46788899998876

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.88  E-value=9.4e-22  Score=193.69  Aligned_cols=123  Identities=30%  Similarity=0.477  Sum_probs=78.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      +..|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..
T Consensus       121 ~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~  200 (434)
T PHA02874        121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEY  200 (434)
T ss_pred             CCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            44566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  349 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  349 (353)
                      |+.+++++|+++|++++.++..|.||||+|+..++ +++.+|+.
T Consensus       201 g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~  243 (434)
T PHA02874        201 GDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN  243 (434)
T ss_pred             CCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHHc
Confidence            66666666666666666666666666666666543 34444443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=8.2e-23  Score=191.61  Aligned_cols=172  Identities=23%  Similarity=0.325  Sum_probs=120.0

Q ss_pred             HHHHHHHcCCHH-HHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHH
Q 018595          172 PILDEIESGGPS-AMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA  250 (353)
Q Consensus       172 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~  250 (353)
                      .++.+...++.+ -++.-.++-+++++|.+..+....        ..|....+-..-+|-+||-.|+..|++++|+.|+.
T Consensus        34 ~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e--------~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~  105 (615)
T KOG0508|consen   34 SLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPE--------QGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLR  105 (615)
T ss_pred             HHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCcc--------CCceEEeCCcccCCCchhhHHhccCcHHHHHHHHH
Confidence            344444444333 333445667777777665443221        11111112223456677766667788888888888


Q ss_pred             cCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Q 018595          251 AGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKT  330 (353)
Q Consensus       251 ~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~T  330 (353)
                      +|+++|.......|||.-||.-|++++|++|+++|+|++..|+.|.|.||+||..|+.+|+++|++.|||++.++..|+|
T Consensus       106 ~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNT  185 (615)
T KOG0508|consen  106 RGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNT  185 (615)
T ss_pred             hcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCch
Confidence            88888777777778888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCcHHHHHHHHhcC
Q 018595          331 PIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       331 pL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +||.++..|+.+++++|++++
T Consensus       186 ALH~caEsG~vdivq~Ll~~g  206 (615)
T KOG0508|consen  186 ALHDCAESGSVDIVQLLLKHG  206 (615)
T ss_pred             HHHhhhhcccHHHHHHHHhCC
Confidence            888888888888888888765

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.88  E-value=4.2e-22  Score=198.44  Aligned_cols=139  Identities=27%  Similarity=0.308  Sum_probs=124.0

Q ss_pred             hhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhc-CCHHHHHHHHHcCCCC
Q 018595          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGY-GEVKCAQILLEAGANV  288 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~-g~~~~v~~Ll~~gadi  288 (353)
                      ....+...|.+. ...+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.. ++.+++++|+++|+++
T Consensus       183 iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv  261 (477)
T PHA02878        183 LTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV  261 (477)
T ss_pred             HHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC
Confidence            445566666665 55678899999999999999999999999999999999999999999976 7999999999999999


Q ss_pred             CCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHhcC
Q 018595          289 DALDK-NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS-QHDVLKLLEKDA  351 (353)
Q Consensus       289 ~~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~~  351 (353)
                      +.++. .|+||||+|  .++.+++++|+++|++++.+|..|+||||+|+..+ ..+++++|+.+.
T Consensus       262 n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        262 NAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNI  324 (477)
T ss_pred             CccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHH
Confidence            99986 799999999  57889999999999999999999999999999754 567888887654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.6e-21  Score=192.13  Aligned_cols=142  Identities=25%  Similarity=0.334  Sum_probs=126.5

Q ss_pred             hhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCC-----------------------CCCCCCCCCCcHH
Q 018595          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA-----------------------DKDEEDSEGRTAL  266 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~-----------------------d~~~~d~~g~t~L  266 (353)
                      ....+...|.+. ...+..|.||||+|+..|+.+++++|+++|+                       +++.++..|.|||
T Consensus        50 iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~L  128 (434)
T PHA02874         50 IVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFL  128 (434)
T ss_pred             HHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHH
Confidence            445556666665 4456778999999999999999999998764                       4566788999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Q 018595          267 HFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL  346 (353)
Q Consensus       267 h~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~  346 (353)
                      |+||..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|++++..|..|+||||+|+.+|+.+++++
T Consensus       129 h~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~  208 (434)
T PHA02874        129 HYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKL  208 (434)
T ss_pred             HHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCC
Q 018595          347 LEKDAF  352 (353)
Q Consensus       347 Ll~~~~  352 (353)
                      |+++|.
T Consensus       209 Ll~~g~  214 (434)
T PHA02874        209 LIDHGN  214 (434)
T ss_pred             HHhCCC
Confidence            998863

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.3e-21  Score=194.93  Aligned_cols=139  Identities=31%  Similarity=0.406  Sum_probs=128.4

Q ss_pred             hhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC------CcHHHHHHhcCC--HHHHHHHHH
Q 018595          212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEG------RTALHFACGYGE--VKCAQILLE  283 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g------~t~Lh~Aa~~g~--~~~v~~Ll~  283 (353)
                      ..+...|.+. ...+..|.||||+|+..|+.+++++|++.|++++..+..|      .||||+|+..|+  .+++++|++
T Consensus       160 ~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~  238 (480)
T PHA03100        160 KLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS  238 (480)
T ss_pred             HHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH
Confidence            3344555554 3445689999999999999999999999999999998888      999999999999  999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          284 AGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       284 ~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+++.+++++|+++|
T Consensus       239 ~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g  306 (480)
T PHA03100        239 YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG  306 (480)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999976

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.87  E-value=1.8e-21  Score=199.25  Aligned_cols=143  Identities=18%  Similarity=0.152  Sum_probs=122.6

Q ss_pred             hhhhhhhcC-cchhhhcCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCC--HHHHHHHHHc
Q 018595          210 ATTSADNAG-ADEAEEVGNEDESIVHHTAS--VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE--VKCAQILLEA  284 (353)
Q Consensus       210 ~~~~~~~~~-~~~~~~~~~~g~t~Lh~Aa~--~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~--~~~v~~Ll~~  284 (353)
                      ....+...| .++....+..|.||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+..|+  .++|++|+++
T Consensus       157 iVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~  236 (764)
T PHA02716        157 LIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIEL  236 (764)
T ss_pred             HHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc
Confidence            445556666 55544447889999999865  467899999999999999999999999999999995  5899999999


Q ss_pred             CCCCCCCCCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHHCCCCCCCcCCC
Q 018595          285 GANVDALDKNKNTALHYA-------------------------------------AGYGRKECVALLLENGAAVTLQNMD  327 (353)
Q Consensus       285 gadi~~~d~~G~TpLh~A-------------------------------------~~~g~~~~v~~Ll~~gad~~~~d~~  327 (353)
                      |+++|.+|..|+||||+|                                     +..|+.+++++|+++|++++.+|..
T Consensus       237 GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~  316 (764)
T PHA02716        237 GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSA  316 (764)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCC
Confidence            999999999999999975                                     3457889999999999999999999


Q ss_pred             CCCHHHHHHH--cCcHHHHHHHHhcCC
Q 018595          328 GKTPIDVAKL--NSQHDVLKLLEKDAF  352 (353)
Q Consensus       328 g~TpL~~A~~--~g~~~iv~~Ll~~~~  352 (353)
                      |+||||+|+.  +++.+++++|+++|.
T Consensus       317 G~TPLH~Aaa~~~~~~eIVklLLe~GA  343 (764)
T PHA02716        317 GRTCLHQYILRHNISTDIIKLLHEYGN  343 (764)
T ss_pred             CCCHHHHHHHHhCCCchHHHHHHHcCC
Confidence            9999998764  568899999998874

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.6e-21  Score=172.14  Aligned_cols=130  Identities=22%  Similarity=0.253  Sum_probs=115.2

Q ss_pred             hhhhhhhcCcchhhhcCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh--cCCHHHHHHHHHc
Q 018595          210 ATTSADNAGADEAEEVGNEDESIVHHTASV---GDAEGLKNALAAGADKDEEDSEGRTALHFACG--YGEVKCAQILLEA  284 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~--~g~~~~v~~Ll~~  284 (353)
                      ....+...+.++....+..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|++.
T Consensus        68 iv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~  147 (209)
T PHA02859         68 ILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS  147 (209)
T ss_pred             HHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            455666777777554446899999998864   47999999999999999999999999999876  4689999999999


Q ss_pred             CCCCCCCCCCCCcHHHH-HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Q 018595          285 GANVDALDKNKNTALHY-AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  339 (353)
Q Consensus       285 gadi~~~d~~G~TpLh~-A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g  339 (353)
                      |++++.+|..|.||||. |+..++.+++++|+++|++++.+|..|+||||+|..++
T Consensus       148 gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        148 GVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99999999999999996 56788999999999999999999999999999999765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=4e-22  Score=168.75  Aligned_cols=127  Identities=24%  Similarity=0.275  Sum_probs=109.7

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCC--C-----CCCCCCCCCcHHHHHHhcCCH---HHHHHHHHcCCCCCCCC
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGA--D-----KDEEDSEGRTALHFACGYGEV---KCAQILLEAGANVDALD  292 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~--d-----~~~~d~~g~t~Lh~Aa~~g~~---~~v~~Ll~~gadi~~~d  292 (353)
                      ...+..|.||||+||..|+.  +..++..+.  +     ++.+|..|+||||+|+..|+.   +++++|++.|++++.++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            34577899999999999984  333333322  2     234688999999999999987   46899999999999998


Q ss_pred             C-CCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          293 K-NKNTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       293 ~-~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      . .|+||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4 89999999999999999999998 59999999999999999999999999999999876

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.86  E-value=2.5e-21  Score=198.19  Aligned_cols=142  Identities=18%  Similarity=0.152  Sum_probs=124.1

Q ss_pred             hhhhhhhcCcchhhhcCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCCCCcHHHHH------------------
Q 018595          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGD--AEGLKNALAAGADKDEEDSEGRTALHFA------------------  269 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~--~~~v~~Ll~~g~d~~~~d~~g~t~Lh~A------------------  269 (353)
                      ....+...|.++ +..+..|.||||+|+..|+  .++|++|++.|++++.+|..|+||||+|                  
T Consensus       194 IVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~  272 (764)
T PHA02716        194 ILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIES  272 (764)
T ss_pred             HHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHh
Confidence            344455566665 4567889999999999995  5899999999999999999999999975                  


Q ss_pred             -------------------HhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCcCCCC
Q 018595          270 -------------------CGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG--YGRKECVALLLENGAAVTLQNMDG  328 (353)
Q Consensus       270 -------------------a~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~--~g~~~~v~~Ll~~gad~~~~d~~g  328 (353)
                                         +..|+.+++++|++.|++++.+|..|+||||+|+.  .++.+++++|+++|++++.+|..|
T Consensus       273 ~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G  352 (764)
T PHA02716        273 LDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIG  352 (764)
T ss_pred             ccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCC
Confidence                               34578899999999999999999999999999874  568999999999999999999999


Q ss_pred             CCHHHHHHH--------------cCcHHHHHHHHhcCC
Q 018595          329 KTPIDVAKL--------------NSQHDVLKLLEKDAF  352 (353)
Q Consensus       329 ~TpL~~A~~--------------~g~~~iv~~Ll~~~~  352 (353)
                      +||||+|+.              .++.+++++|+++|.
T Consensus       353 ~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA  390 (764)
T PHA02716        353 NTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA  390 (764)
T ss_pred             CCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC
Confidence            999999865              378999999999874

>PHA03095 ankyrin-like protein; Provisional

Probab=99.86  E-value=3.7e-21  Score=191.07  Aligned_cols=139  Identities=25%  Similarity=0.314  Sum_probs=127.0

Q ss_pred             hhhhhcCcchhhhcCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCH--HHHHHHHHcCCC
Q 018595          212 TSADNAGADEAEEVGNEDESIVHHTASV--GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV--KCAQILLEAGAN  287 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~--g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~--~~v~~Ll~~gad  287 (353)
                      ..+...+.+.... +..|.|+||+++..  ++.++++.|++.|++++.+|..|+||||+|+..|+.  .+++.|+..|++
T Consensus       171 ~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d  249 (471)
T PHA03095        171 RLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS  249 (471)
T ss_pred             HHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC
Confidence            4445556665444 88899999999875  788999999999999999999999999999999975  688999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          288 VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       288 i~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.+++++|++++
T Consensus       250 in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        250 INARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKN  313 (471)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999864

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.86  E-value=5.4e-21  Score=190.42  Aligned_cols=130  Identities=24%  Similarity=0.322  Sum_probs=124.4

Q ss_pred             hhcCCCCCcHHHH-----HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--hcCCHHHHHHHHHcCCCCCCCCCCC
Q 018595          223 EEVGNEDESIVHH-----TASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVKCAQILLEAGANVDALDKNK  295 (353)
Q Consensus       223 ~~~~~~g~t~Lh~-----Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa--~~g~~~~v~~Ll~~gadi~~~d~~G  295 (353)
                      ...+..+.||||+     |+..|+.+++++|++.|++++..|..|.||||+|+  ..|+.+++++|+++|++++..+..|
T Consensus        62 ~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g  141 (480)
T PHA03100         62 NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDG  141 (480)
T ss_pred             CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCC
Confidence            3446678999999     99999999999999999999999999999999999  9999999999999999999999999


Q ss_pred             CcHHHHHHHcC--CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          296 NTALHYAAGYG--RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       296 ~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .||||+|+..|  +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|.
T Consensus       142 ~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  200 (480)
T PHA03100        142 ENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGA  200 (480)
T ss_pred             CcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            99999999999  9999999999999999999999999999999999999999999874

>PHA03095 ankyrin-like protein; Provisional

Probab=99.86  E-value=6.2e-21  Score=189.45  Aligned_cols=128  Identities=27%  Similarity=0.318  Sum_probs=89.7

Q ss_pred             hcCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCcHH
Q 018595          224 EVGNEDESIVHHTASVG---DAEGLKNALAAGADKDEEDSEGRTALHFACGYG-EVKCAQILLEAGANVDALDKNKNTAL  299 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g-~~~~v~~Ll~~gadi~~~d~~G~TpL  299 (353)
                      ..+..|.||||+|+..+   +.+++++|++.|++++.++..|+||||+|+..| ..+++++|+++|++++.+|..|+|||
T Consensus        42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpL  121 (471)
T PHA03095         42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL  121 (471)
T ss_pred             cCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            34556677777777766   677777777777777777777777777777777 47777777777777777777777777


Q ss_pred             HHHH--HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC--cHHHHHHHHhcC
Q 018595          300 HYAA--GYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS--QHDVLKLLEKDA  351 (353)
Q Consensus       300 h~A~--~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~~  351 (353)
                      |+|+  ..++.+++++|+++|++++.+|..|.||||+|+..+  +.+++++|+++|
T Consensus       122 h~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g  177 (471)
T PHA03095        122 HVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAG  177 (471)
T ss_pred             HHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence            7777  445667777777777777777777777777766654  466777777654

>PHA02946 ankyin-like protein; Provisional

Probab=99.86  E-value=5.8e-21  Score=188.21  Aligned_cols=135  Identities=19%  Similarity=0.342  Sum_probs=91.4

Q ss_pred             hhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCC--HHHHHHHHHcCCCCC--
Q 018595          214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE--VKCAQILLEAGANVD--  289 (353)
Q Consensus       214 ~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~--~~~v~~Ll~~gadi~--  289 (353)
                      +...|.++ +..+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++  .+++++|+++|++++  
T Consensus        58 Ll~~Gadv-n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~  136 (446)
T PHA02946         58 LLHRGYSP-NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNS  136 (446)
T ss_pred             HHHCcCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccc
Confidence            34445444 4456777888888888888888888888888888778888888887776543  566666666666655  


Q ss_pred             -------------------------------CCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Q 018595          290 -------------------------------ALDKNKNTALHYAAGYG--RKECVALLLENGAAVTLQNMDGKTPIDVAK  336 (353)
Q Consensus       290 -------------------------------~~d~~G~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~  336 (353)
                                                     .+|..|+||||+|+..+  +.+++++|+++|++++.+|.+|+||||+|+
T Consensus       137 ~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa  216 (446)
T PHA02946        137 VDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC  216 (446)
T ss_pred             cCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence                                           34455556666655433  346667777777777777777777777777


Q ss_pred             HcC--cHHHHHHHHh
Q 018595          337 LNS--QHDVLKLLEK  349 (353)
Q Consensus       337 ~~g--~~~iv~~Ll~  349 (353)
                      .++  +.+++++|+.
T Consensus       217 ~~~~~~~~iv~lLl~  231 (446)
T PHA02946        217 SKTVKNVDIINLLLP  231 (446)
T ss_pred             HcCCCcHHHHHHHHc
Confidence            664  5677777665

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=4e-21  Score=190.43  Aligned_cols=131  Identities=27%  Similarity=0.394  Sum_probs=123.2

Q ss_pred             hhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHH-cC-CCCCCCCCCCCcHH
Q 018595          222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE-AG-ANVDALDKNKNTAL  299 (353)
Q Consensus       222 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~-~g-adi~~~d~~G~TpL  299 (353)
                      .+..|.+|.||||+||+.|+.+.+..|+..|++++.++.++.||||+|+.+|+..+|+-||+ .| ..+|..|-.|.|||
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence            35568899999999999999999999999999999999999999999999999999999998 55 56789999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCC---CcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          300 HYAAGYGRKECVALLLENGAAVT---LQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       300 h~A~~~g~~~~v~~Ll~~gad~~---~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+|++.||.+|+++|+..||...   ..|.+|+||||.|+.+|+..+|++|+.||.
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga  401 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGA  401 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCC
Confidence            99999999999999999999887   569999999999999999999999999985

>PHA02795 ankyrin-like protein; Provisional

Probab=99.86  E-value=5.8e-21  Score=184.01  Aligned_cols=139  Identities=19%  Similarity=0.137  Sum_probs=123.8

Q ss_pred             hhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHhcCCHHHHHHHHH
Q 018595          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE------DSEGRTALHFACGYGEVKCAQILLE  283 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~------d~~g~t~Lh~Aa~~g~~~~v~~Ll~  283 (353)
                      .+..+...|.++..   ..+.|+||+|+..++.+++++|+++|++....      +..+.|++|.|+..++.+++++|+.
T Consensus       133 iV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs  209 (437)
T PHA02795        133 IVDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP  209 (437)
T ss_pred             HHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh
Confidence            55666778888743   34589999999999999999999999854322      1357899999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC--------cHHHHHHHHhcC
Q 018595          284 AGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS--------QHDVLKLLEKDA  351 (353)
Q Consensus       284 ~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g--------~~~iv~~Ll~~~  351 (353)
                      +|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|        +.+++++|++++
T Consensus       210 ~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g  285 (437)
T PHA02795        210 YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP  285 (437)
T ss_pred             CcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999998        469999999876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.1e-20  Score=175.37  Aligned_cols=122  Identities=22%  Similarity=0.274  Sum_probs=108.2

Q ss_pred             cCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcH
Q 018595          225 VGNEDES-IVHHTASVGDAEGLKNALAAGADKDEED----SEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTA  298 (353)
Q Consensus       225 ~~~~g~t-~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d----~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d-~~G~Tp  298 (353)
                      .+..+.| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|+|++.++ ..|.||
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            3555665 5666777799999999999999999874    589999999999999999999999999999864 579999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Q 018595          299 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL  346 (353)
Q Consensus       299 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~  346 (353)
                      ||+|+..|+.+++++|+.+|++++.+|..|+||||+|+..++.+++.+
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~  155 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFM  155 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHH
Confidence            999999999999999999999999999999999999998765554433

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.85  E-value=1.4e-21  Score=167.31  Aligned_cols=133  Identities=26%  Similarity=0.272  Sum_probs=123.7

Q ss_pred             CcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 018595          218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNT  297 (353)
Q Consensus       218 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~T  297 (353)
                      .....+..++.|.|||.||+.+|++.+|++||+.|+|++.......|+|.+|+..|..+||++||.++.|+|..|.+|.|
T Consensus       149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgT  228 (296)
T KOG0502|consen  149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGT  228 (296)
T ss_pred             hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCc
Confidence            33455777999999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          298 ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       298 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      ||-||++.++.+||+.|+..||+++..+..|++++++|+..|+..+-+.+.+|
T Consensus       229 pLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr~Vqqvie~h  281 (296)
T KOG0502|consen  229 PLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYRIVQQVIEKH  281 (296)
T ss_pred             eeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999555555544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.85  E-value=8.7e-21  Score=189.80  Aligned_cols=138  Identities=19%  Similarity=0.192  Sum_probs=104.9

Q ss_pred             hhhcCcchhhhcCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHhcC----CHHHHHHHHHcCC
Q 018595          214 ADNAGADEAEEVGNEDESIVHHTASV--GDAEGLKNALAAGADKDE-EDSEGRTALHFACGYG----EVKCAQILLEAGA  286 (353)
Q Consensus       214 ~~~~~~~~~~~~~~~g~t~Lh~Aa~~--g~~~~v~~Ll~~g~d~~~-~d~~g~t~Lh~Aa~~g----~~~~v~~Ll~~ga  286 (353)
                      +...|.++....+..|.||||+|+..  ++.++|++|++.|++++. .+..|.||||+|+..+    +.+++++|++.|+
T Consensus       130 Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga  209 (494)
T PHA02989        130 LLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV  209 (494)
T ss_pred             HHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCC
Confidence            34445544334456667777766543  466777777777777665 4566777777665543    6666666666666


Q ss_pred             CC--------------------------------------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Q 018595          287 NV--------------------------------------DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG  328 (353)
Q Consensus       287 di--------------------------------------~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g  328 (353)
                      ++                                      |.+|..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       210 ~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G  289 (494)
T PHA02989        210 NIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDG  289 (494)
T ss_pred             CccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCC
Confidence            54                                      4556679999999999999999999999999999999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhcC
Q 018595          329 KTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       329 ~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +||||+|+.+|+.+++++|++..
T Consensus       290 ~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        290 DTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999754

>PHA02798 ankyrin-like protein; Provisional

Probab=99.85  E-value=9.4e-21  Score=189.34  Aligned_cols=140  Identities=16%  Similarity=0.200  Sum_probs=107.6

Q ss_pred             hhhhhhcCcchhhhcCCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhc----CCHHHHHHHH
Q 018595          211 TTSADNAGADEAEEVGNEDESIVHHTASVGD---AEGLKNALAAGADKDEED-SEGRTALHFACGY----GEVKCAQILL  282 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~---~~~v~~Ll~~g~d~~~~d-~~g~t~Lh~Aa~~----g~~~~v~~Ll  282 (353)
                      ...+...|.++ ...+..|.||||+|+..|+   .+++++|++.|++++..+ ..|.||||.++..    ++.+++++|+
T Consensus       128 v~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li  206 (489)
T PHA02798        128 LLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFV  206 (489)
T ss_pred             HHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHH
Confidence            34444555554 4556677777777777766   777777777777777663 4677777776543    3567777777


Q ss_pred             HcCCC---------------------------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 018595          283 EAGAN---------------------------------------VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTL  323 (353)
Q Consensus       283 ~~gad---------------------------------------i~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~  323 (353)
                      ++|++                                       +|.+|..|+||||+|+.+|+.+++++|+++|||++.
T Consensus       207 ~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~  286 (489)
T PHA02798        207 DNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINI  286 (489)
T ss_pred             HCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence            66543                                       344566799999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          324 QNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       324 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|..|+||||+|+.+++.++++.|++++
T Consensus       287 ~d~~G~TpL~~A~~~~~~~iv~~lL~~~  314 (489)
T PHA02798        287 ITELGNTCLFTAFENESKFIFNSILNKK  314 (489)
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHccC
Confidence            9999999999999999999999998865

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=5.1e-21  Score=158.28  Aligned_cols=123  Identities=28%  Similarity=0.350  Sum_probs=95.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 018595          231 SIVHHTASVGDAEGLKNALAAGAD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKE  309 (353)
Q Consensus       231 t~Lh~Aa~~g~~~~v~~Ll~~g~d-~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~  309 (353)
                      ..+.+|+..+.+..|+.||+..++ +|.+|.+|+||||.|+.+|+++||+.|+..|++++.+...|+||||.||...+.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            346677778888888888877655 7778888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc-HHHHHHHHhcCCC
Q 018595          310 CVALLLENGAAVTLQNMDGKTPIDVAKLNSQ-HDVLKLLEKDAFL  353 (353)
Q Consensus       310 ~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~~~l  353 (353)
                      |+.+||++|+||+......+||||+|+.+.+ ...+.+|+.+-+|
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi  189 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYI  189 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhcccc
Confidence            8888888888888888888888888877665 4556677665543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=1.9e-21  Score=182.45  Aligned_cols=138  Identities=31%  Similarity=0.419  Sum_probs=125.7

Q ss_pred             hhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 018595          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD  289 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~  289 (353)
                      .++++...+..+ +.......|||.-||.-|++++|++|+++|+|++..+..|.|+||+||..|+.+|+++|++.|+|+|
T Consensus        99 vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn  177 (615)
T KOG0508|consen   99 VVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN  177 (615)
T ss_pred             HHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc
Confidence            345556666444 4555667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Q 018595          290 ALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  349 (353)
Q Consensus       290 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  349 (353)
                      .++..|+|+||.|+..|+.+++++|+.+|+.+.. |..|-|||-.|+..|+.++|.+|++
T Consensus       178 ~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  178 AKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999999999998865 5569999999999999999999985

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=2.1e-20  Score=197.40  Aligned_cols=136  Identities=23%  Similarity=0.213  Sum_probs=120.0

Q ss_pred             hhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 018595          214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK  293 (353)
Q Consensus       214 ~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~  293 (353)
                      +...|.+. +..+..|.||||+||..|+.++++.|+++|++++.+|..|+||||+|+..|+.+++++|+..++..+.  .
T Consensus       544 Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~  620 (823)
T PLN03192        544 LLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--H  620 (823)
T ss_pred             HHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--c
Confidence            34445554 45678899999999999999999999999999999999999999999999999999999988776543  4


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       294 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .|.++||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++|.
T Consensus       621 ~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        621 AAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             cCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            57789999999999999999999999999999999999999999999999999999873

>PHA02946 ankyin-like protein; Provisional

Probab=99.84  E-value=3.6e-20  Score=182.61  Aligned_cols=139  Identities=17%  Similarity=0.194  Sum_probs=123.5

Q ss_pred             hhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcC--CHHHHHHHHHcCCCC
Q 018595          211 TTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG--EVKCAQILLEAGANV  288 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g--~~~~v~~Ll~~gadi  288 (353)
                      ..++...|.++....+..|.|||| ||..|+.+++++|++.|++++.+|..|+||||+|+..+  +.+++++|++.|+++
T Consensus       123 v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi  201 (446)
T PHA02946        123 INLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP  201 (446)
T ss_pred             HHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence            345666777776567888999997 66779999999999999999999999999999988754  579999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc-HHHHHHHHhcC
Q 018595          289 DALDKNKNTALHYAAGYG--RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ-HDVLKLLEKDA  351 (353)
Q Consensus       289 ~~~d~~G~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~~  351 (353)
                      +.+|..|+||||+|+..|  +.+++++|++ |++++.+|..|+||||+|+..++ .+++++|+.++
T Consensus       202 n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g  266 (446)
T PHA02946        202 SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTS  266 (446)
T ss_pred             cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCC
Confidence            999999999999999986  7899999985 89999999999999999999988 58999998875

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.3e-19  Score=188.10  Aligned_cols=137  Identities=26%  Similarity=0.344  Sum_probs=95.4

Q ss_pred             hhhcCcchhhhcCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 018595          214 ADNAGADEAEEVGNEDESIVHHTASV-GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD  292 (353)
Q Consensus       214 ~~~~~~~~~~~~~~~g~t~Lh~Aa~~-g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d  292 (353)
                      +...+.+. ...+..|.||||+|+.. ++.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       327 Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~  405 (682)
T PHA02876        327 LIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS  405 (682)
T ss_pred             HHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccC
Confidence            33334333 34456677777777764 35667777777777777777777777777777777777777777777777777


Q ss_pred             CCCCcHHHHHHHcCC-HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHhcC
Q 018595          293 KNKNTALHYAAGYGR-KECVALLLENGAAVTLQNMDGKTPIDVAKLNS-QHDVLKLLEKDA  351 (353)
Q Consensus       293 ~~G~TpLh~A~~~g~-~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~~  351 (353)
                      ..|.||||+|+..++ ..++++|+++|++++.+|..|+||||+|+..+ +.+++++|+++|
T Consensus       406 ~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~G  466 (682)
T PHA02876        406 QKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNG  466 (682)
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCC
Confidence            777777777766544 45677777777777777777777777777655 567777777765

>PHA02798 ankyrin-like protein; Provisional

Probab=99.83  E-value=6.8e-20  Score=183.17  Aligned_cols=141  Identities=25%  Similarity=0.296  Sum_probs=124.8

Q ss_pred             hhhhhhcCcchhhhcCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcC---CHHHHHHHH
Q 018595          211 TTSADNAGADEAEEVGNEDESIVHHTASV-----GDAEGLKNALAAGADKDEEDSEGRTALHFACGYG---EVKCAQILL  282 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g---~~~~v~~Ll  282 (353)
                      ...+...|.++ +..+..|.||||+++..     +..+++++|+++|+|+|.+|..|+||||+|+..+   +.+++++|+
T Consensus        54 v~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll  132 (489)
T PHA02798         54 VKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMI  132 (489)
T ss_pred             HHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHH
Confidence            34445666665 45678899999998864     6789999999999999999999999999999875   789999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHc----CcHHHHHHHHhcCC
Q 018595          283 EAGANVDALDKNKNTALHYAAGYGR---KECVALLLENGAAVTLQN-MDGKTPIDVAKLN----SQHDVLKLLEKDAF  352 (353)
Q Consensus       283 ~~gadi~~~d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~----g~~~iv~~Ll~~~~  352 (353)
                      ++|++++.+|..|.||||+|+..++   .+++++|+++|++++..+ ..|.||||+++.+    ++.+++++|+++|.
T Consensus       133 ~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga  210 (489)
T PHA02798        133 ENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF  210 (489)
T ss_pred             HcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence            9999999999999999999999998   999999999999999885 5799999998764    47999999999885

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.1e-19  Score=181.90  Aligned_cols=139  Identities=17%  Similarity=0.154  Sum_probs=119.8

Q ss_pred             hhhhhcCcchhhhcCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCCCCCcHHHHHHhc--CCHHHHHHHHHcC
Q 018595          212 TSADNAGADEAEEVGNEDESIVHHTASV---GDAEGLKNALAAGADK-DEEDSEGRTALHFACGY--GEVKCAQILLEAG  285 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~g~d~-~~~d~~g~t~Lh~Aa~~--g~~~~v~~Ll~~g  285 (353)
                      ..+...|.+. +..+..|.||||.|+..   |+.+++++|+++|+|+ +.+|..|+||||+|+..  ++.++|++|+++|
T Consensus        92 ~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G  170 (494)
T PHA02989         92 KLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFG  170 (494)
T ss_pred             HHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcC
Confidence            4445666665 45577899999988765   6899999999999999 78999999999998764  6899999999999


Q ss_pred             CCCCC-CCCCCCcHHHHHHHcC----CHHHHHHHHHCCCCCCC-------------------------------------
Q 018595          286 ANVDA-LDKNKNTALHYAAGYG----RKECVALLLENGAAVTL-------------------------------------  323 (353)
Q Consensus       286 adi~~-~d~~G~TpLh~A~~~g----~~~~v~~Ll~~gad~~~-------------------------------------  323 (353)
                      ++++. .+..|.||||+|+..+    +.+++++|+++|++++.                                     
T Consensus       171 adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn  250 (494)
T PHA02989        171 VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKIN  250 (494)
T ss_pred             CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCC
Confidence            99998 6788999999998764    89999999999887654                                     


Q ss_pred             -cCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          324 -QNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       324 -~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                       +|..|+||||+|+..|+.+++++|+++|
T Consensus       251 ~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G  279 (494)
T PHA02989        251 KKDKKGFNPLLISAKVDNYEAFNYLLKLG  279 (494)
T ss_pred             CCCCCCCCHHHHHHHhcCHHHHHHHHHcC
Confidence             4566999999999999999999999987

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=2.6e-20  Score=170.04  Aligned_cols=125  Identities=28%  Similarity=0.427  Sum_probs=77.3

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHH----------------------------------
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAG-ADKDEEDSEGRTALH----------------------------------  267 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g-~d~~~~d~~g~t~Lh----------------------------------  267 (353)
                      +..|.+|.|+|||++.++++++|+.||+.| +++|.++.-|+||++                                  
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQ  341 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQ  341 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcc
Confidence            445788999999999999999999999887 778877765555554                                  


Q ss_pred             ----HHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHH
Q 018595          268 ----FACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHD  342 (353)
Q Consensus       268 ----~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~TpL~~A~~~g~~~  342 (353)
                          +|+.+|+.++|+.||..|+|||.+|.+|.|+|+.||.+||.+||++||.. +.|+...|.+|.|+|.+|...||.+
T Consensus       342 TALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~e  421 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHRE  421 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchH
Confidence                45555555555555555555555555555555555555555555555533 4455555555555555555555555


Q ss_pred             HHHHH
Q 018595          343 VLKLL  347 (353)
Q Consensus       343 iv~~L  347 (353)
                      |.-+|
T Consensus       422 Ia~ml  426 (452)
T KOG0514|consen  422 IAVML  426 (452)
T ss_pred             HHHHH
Confidence            44333

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.82  E-value=3.5e-19  Score=184.91  Aligned_cols=139  Identities=26%  Similarity=0.340  Sum_probs=123.0

Q ss_pred             hhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCC-HHHHHHHHHcCCCC
Q 018595          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE-VKCAQILLEAGANV  288 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~-~~~v~~Ll~~gadi  288 (353)
                      ....+...+.+. ...+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+. ..++++|++.|+++
T Consensus       357 iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadi  435 (682)
T PHA02876        357 IVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANV  435 (682)
T ss_pred             HHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            344455555554 4567889999999999999999999999999999999999999999987665 57899999999999


Q ss_pred             CCCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          289 DALDKNKNTALHYAAGYG-RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       289 ~~~d~~G~TpLh~A~~~g-~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |.+|..|+||||+|+..| +.+++++|+++|++++.+|..|.|||++|+.++  +++++|+..+
T Consensus       436 n~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~  497 (682)
T PHA02876        436 NSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYG  497 (682)
T ss_pred             CcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCC
Confidence            999999999999999977 689999999999999999999999999999865  5788887765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.82  E-value=2.2e-19  Score=180.80  Aligned_cols=154  Identities=16%  Similarity=0.143  Sum_probs=131.4

Q ss_pred             HHHHHHhccc--cCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCC----HHHHHHHHHcCC--CCCCCCCCCCcHHH
Q 018595          196 QKLGEAMGLA--VGGDATTSADNAGADEAEEVGNEDESIVHHTASVGD----AEGLKNALAAGA--DKDEEDSEGRTALH  267 (353)
Q Consensus       196 ~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~----~~~v~~Ll~~g~--d~~~~d~~g~t~Lh  267 (353)
                      ..|...+...  +.-+.+..+...|.++...  ..|.||||+|+..++    .+++++|+++|+  +++.+|..|.||||
T Consensus       345 ~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k--~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh  422 (672)
T PHA02730        345 AMLINYLHYGDMVSIPILRCMLDNGATMDKT--TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMY  422 (672)
T ss_pred             HHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC--CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHh
Confidence            3455555543  5556788889999988653  689999999998875    899999999997  68889999999999


Q ss_pred             H---HHhcC---------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHH
Q 018595          268 F---ACGYG---------EVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPIDV  334 (353)
Q Consensus       268 ~---Aa~~g---------~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~g~TpL~~  334 (353)
                      .   |...+         ..+++++|+.+|+++|.+|..|+||||+|+..++.+++++|+++||+++.+|. .|.||||+
T Consensus       423 ~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~  502 (672)
T PHA02730        423 GLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQK  502 (672)
T ss_pred             HHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHH
Confidence            4   33232         23579999999999999999999999999999999999999999999999997 59999999


Q ss_pred             HHHc--CcHHHHHHHHhcC
Q 018595          335 AKLN--SQHDVLKLLEKDA  351 (353)
Q Consensus       335 A~~~--g~~~iv~~Ll~~~  351 (353)
                      |+.+  ++.+++++|++++
T Consensus       503 Aa~~~~~~~eIv~~LLs~g  521 (672)
T PHA02730        503 SSYRRENKTKLVDLLLSYH  521 (672)
T ss_pred             HHHhhcCcHHHHHHHHHcC
Confidence            9874  7899999999986

>PHA02917 ankyrin-like protein; Provisional

Probab=99.82  E-value=1.8e-19  Score=184.73  Aligned_cols=121  Identities=21%  Similarity=0.171  Sum_probs=108.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--hcCCHHHHHHHHHcCCCCCCCCC---CC----------
Q 018595          231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVKCAQILLEAGANVDALDK---NK----------  295 (353)
Q Consensus       231 t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa--~~g~~~~v~~Ll~~gadi~~~d~---~G----------  295 (353)
                      +++|+|+..|+.++|++|+++|+|++.+|..|+||||+++  ..|+.++|++|+++|++++.+|.   .|          
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~  184 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRN  184 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccc
Confidence            5667788888999999999999999999999999999654  57899999999999999986653   34          


Q ss_pred             -CcHHHHHHH-----------cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH--HHHHHHHhcC
Q 018595          296 -NTALHYAAG-----------YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH--DVLKLLEKDA  351 (353)
Q Consensus       296 -~TpLh~A~~-----------~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~--~iv~~Ll~~~  351 (353)
                       .||||+|+.           +++.++|++|+++|++++.+|.+|+||||+|+.+|+.  ++|++|++++
T Consensus       185 ~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~  254 (661)
T PHA02917        185 CGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGI  254 (661)
T ss_pred             cccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCC
Confidence             599999986           5689999999999999999999999999999999985  8999998754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.81  E-value=8.2e-20  Score=190.78  Aligned_cols=126  Identities=36%  Similarity=0.459  Sum_probs=122.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      ...+-++||+|...+...+++.++++|++++.++..|+||||+||.+|+..+|++||++|+|++.+|..|+||||.||..
T Consensus       504 ~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~  583 (1143)
T KOG4177|consen  504 AKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQ  583 (1143)
T ss_pred             chhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHc
Confidence            46688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |+.+|+.+|+++||++|..|.+|.|||++|+..|+.+++++|+..+
T Consensus       584 G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~  629 (1143)
T KOG4177|consen  584 GHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVT  629 (1143)
T ss_pred             ChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhcc
Confidence            9999999999999999999999999999999999999999998765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=5.6e-20  Score=163.27  Aligned_cols=129  Identities=31%  Similarity=0.401  Sum_probs=116.2

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      +.-+..|.+|||+||+.|+..+++.|+..|+.+|..+.-..||||+|+.+||.++|+.|+++.+|+|+.+..|+||||||
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhya  107 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYA  107 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhh
Confidence            45578899999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |..|+-.+++-|+..||.+++.++.|.|||+.|.-.-..-+.++-.++|
T Consensus       108 cfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~g  156 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHG  156 (448)
T ss_pred             hhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999886543333444444443

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.81  E-value=3e-19  Score=136.75  Aligned_cols=89  Identities=49%  Similarity=0.701  Sum_probs=81.4

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 018595          233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVA  312 (353)
Q Consensus       233 Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~  312 (353)
                      ||+||..|+.+++++|++.+.+++.    |+||||+||..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988876    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCCcC
Q 018595          313 LLLENGAAVTLQN  325 (353)
Q Consensus       313 ~Ll~~gad~~~~d  325 (353)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02917 ankyrin-like protein; Provisional

Probab=99.81  E-value=4.1e-19  Score=182.03  Aligned_cols=130  Identities=18%  Similarity=0.210  Sum_probs=106.5

Q ss_pred             hhcCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcC--------------------------
Q 018595          223 EEVGNEDESIVHHTASV---GDAEGLKNALAAGADKDEEDSEGRTALHFACGYG--------------------------  273 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g--------------------------  273 (353)
                      ...+..|.||||+||..   |+.++|++||+.|++++..+..|+||||+|+..|                          
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~  105 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNI  105 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcch
Confidence            45577888888887655   7788888888888888888888888888777644                          


Q ss_pred             ---------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCcCC---CC-----------
Q 018595          274 ---------EVKCAQILLEAGANVDALDKNKNTALHYAA--GYGRKECVALLLENGAAVTLQNM---DG-----------  328 (353)
Q Consensus       274 ---------~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~--~~g~~~~v~~Ll~~gad~~~~d~---~g-----------  328 (353)
                               +.++|++|+++|+|+|.+|..|+||||+|+  ..|+.++|++|+++|++++.+|.   .|           
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~  185 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNC  185 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccccc
Confidence                     457788899999999999999999999654  57899999999999999986654   23           


Q ss_pred             CCHHHHHHH-----------cCcHHHHHHHHhcCC
Q 018595          329 KTPIDVAKL-----------NSQHDVLKLLEKDAF  352 (353)
Q Consensus       329 ~TpL~~A~~-----------~g~~~iv~~Ll~~~~  352 (353)
                      .||||+|+.           +++.+++++|+++|.
T Consensus       186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga  220 (661)
T PHA02917        186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI  220 (661)
T ss_pred             ccHHHHHHhhcccccccccccCcHHHHHHHHHCCC
Confidence            599999976           568999999998773

>PHA02795 ankyrin-like protein; Provisional

Probab=99.80  E-value=5.2e-19  Score=170.56  Aligned_cols=127  Identities=13%  Similarity=0.022  Sum_probs=114.9

Q ss_pred             hcCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC-C-----CCCC
Q 018595          224 EVGNEDESIVHHTAS--VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA-L-----DKNK  295 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~--~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~-~-----d~~G  295 (353)
                      ..+..++|+||.++.  .|+.++|++|+++|+|++..  .+.||||+|+..++.+++++|+.+|++.+. .     +..|
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~  188 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQ  188 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhc
Confidence            356778999999999  89999999999999999875  458999999999999999999999985432 2     1348


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          296 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       296 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .|++|.|...++.+++++|+++||+++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus       189 ~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA  245 (437)
T PHA02795        189 YTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGA  245 (437)
T ss_pred             cchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            899999999999999999999999999999999999999999999999999999873

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=1.4e-18  Score=148.96  Aligned_cols=108  Identities=23%  Similarity=0.277  Sum_probs=99.6

Q ss_pred             hhcCCCCCcHHHHHHHcCCHH---HHHHHHHcCCCCCCCC-CCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCc
Q 018595          223 EEVGNEDESIVHHTASVGDAE---GLKNALAAGADKDEED-SEGRTALHFACGYGEVKCAQILLE-AGANVDALDKNKNT  297 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~---~v~~Ll~~g~d~~~~d-~~g~t~Lh~Aa~~g~~~~v~~Ll~-~gadi~~~d~~G~T  297 (353)
                      ...+..|+||||+|+..|+.+   ++++|+..|++++.++ ..|+||||+|+..|+.+++++|+. .|++++.+|..|+|
T Consensus        51 ~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~t  130 (166)
T PHA02743         51 HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHET  130 (166)
T ss_pred             hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCC
Confidence            455788999999999998765   4899999999999998 589999999999999999999995 89999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Q 018595          298 ALHYAAGYGRKECVALLLENGAAVTLQNMDGKT  330 (353)
Q Consensus       298 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~T  330 (353)
                      |||+|+..++.+++++|+++|++++.++..|..
T Consensus       131 pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        131 AYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            999999999999999999999999999988753

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.79  E-value=4.4e-18  Score=136.55  Aligned_cols=123  Identities=41%  Similarity=0.623  Sum_probs=118.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      +..|.|+||+|+..++.+++++|++.|.+.+..+..|.||||+|+..++.+++++|+..|++++..+..|.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            46789999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  348 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  348 (353)
                      ++.+++++|+.+|.+++..+..|.||+++|...++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999999999999999999999999985

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=1.2e-18  Score=173.11  Aligned_cols=130  Identities=31%  Similarity=0.475  Sum_probs=118.3

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---------------CCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGAD---------------KDEEDSEGRTALHFACGYGEVKCAQILLEAGAN  287 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d---------------~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad  287 (353)
                      +-.+..+.||||.|+..|+.++++.+|+.|..               ++..|.+|.||||+||..|+.++|..|+..|++
T Consensus       219 n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~  298 (929)
T KOG0510|consen  219 NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS  298 (929)
T ss_pred             ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc
Confidence            44567889999999999999999999998742               345688999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHH-CC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          288 VDALDKNKNTALHYAAGYGRKECVALLLE-NG-AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       288 i~~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~g-ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ++.++.++.||||+|+.+|++.+|+-||+ .| ..++..|..|.||||+|+..||..++++|++.|-
T Consensus       299 I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA  365 (929)
T KOG0510|consen  299 INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGA  365 (929)
T ss_pred             ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcCh
Confidence            99999999999999999999999999998 55 4578899999999999999999999999999874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.78  E-value=2.9e-18  Score=172.77  Aligned_cols=130  Identities=15%  Similarity=0.124  Sum_probs=117.3

Q ss_pred             hhcCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcC--CHHHHHHHHHcCC--CCCCCCCCC
Q 018595          223 EEVGNEDESIVHHTASVG---DAEGLKNALAAGADKDEEDSEGRTALHFACGYG--EVKCAQILLEAGA--NVDALDKNK  295 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g--~~~~v~~Ll~~ga--di~~~d~~G  295 (353)
                      ...+..|+||||+|+..|   +.++|++||++|++++.+|..|+||||+|+..+  +.++|++|++.|+  +++..+..+
T Consensus        35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~  114 (672)
T PHA02730         35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIN  114 (672)
T ss_pred             hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccC
Confidence            456788999999999987   599999999999999999999999999999976  7999999999965  558888889


Q ss_pred             CcHHHHHHH--cCCHHHHHHHHH-CCCCCCCcCC-----CCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          296 NTALHYAAG--YGRKECVALLLE-NGAAVTLQNM-----DGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       296 ~TpLh~A~~--~g~~~~v~~Ll~-~gad~~~~d~-----~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .+|||.++.  .++.++|++|+. .+++++...+     .|.+|++++..+++.++|++|+++|+
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~  179 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSEC  179 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCC
Confidence            999999998  899999999996 6788876633     79999999999999999999999985

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=2.5e-18  Score=142.46  Aligned_cols=123  Identities=31%  Similarity=0.425  Sum_probs=111.2

Q ss_pred             CcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 018595          218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNT  297 (353)
Q Consensus       218 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~T  297 (353)
                      .+..++..+.+|+||||.|+..|++++|+.|+..|++++.+...||||||.||...+.+|+-.||++|+|||+......|
T Consensus        86 ~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~lt  165 (228)
T KOG0512|consen   86 KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLT  165 (228)
T ss_pred             ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccch
Confidence            34445677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCH-HHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCc
Q 018595          298 ALHYAAGYGRK-ECVALLL-ENGAAVTLQNMDGKTPIDVAKLNSQ  340 (353)
Q Consensus       298 pLh~A~~~g~~-~~v~~Ll-~~gad~~~~d~~g~TpL~~A~~~g~  340 (353)
                      |||+||.+.+. ..+.+|+ ..+.+...++..+.||+.+|...+-
T Consensus       166 pLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  166 PLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            99999987765 4566666 4688999999999999999988764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.77  E-value=5.2e-18  Score=179.22  Aligned_cols=125  Identities=29%  Similarity=0.296  Sum_probs=116.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      +..+.++||.||..|+.++++.|++.|+|+|..|..|+||||+||..|+.+++++|+++|+++|.+|.+|+||||+|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+.+++++|+..++..+.  ..|.++||+|+.+|+.+++++|+++|.
T Consensus       602 g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga  646 (823)
T PLN03192        602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGL  646 (823)
T ss_pred             CCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCC
Confidence            999999999998876653  457799999999999999999999874

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.77  E-value=1.1e-18  Score=149.66  Aligned_cols=127  Identities=25%  Similarity=0.272  Sum_probs=117.2

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ++.+--+++++.+++..-+++.+..+.++  .+|..|..|.|||.||+.+|++.+|++||+.|+|++..-....++|.+|
T Consensus       123 nevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLA  200 (296)
T KOG0502|consen  123 NEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLA  200 (296)
T ss_pred             CccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHH
Confidence            44566789999999998888877666654  5678999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +..|..+||++||.++.|+|..|-+|-|||-||+.-+|.+||+.|+..|
T Consensus       201 t~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sG  249 (296)
T KOG0502|consen  201 TRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSG  249 (296)
T ss_pred             hcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999876

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.76  E-value=2.3e-18  Score=164.60  Aligned_cols=130  Identities=32%  Similarity=0.411  Sum_probs=120.2

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC------------
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA------------  290 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~------------  290 (353)
                      ...+.+|.|+||-+|.-.+.++|++|+++|++||..|.+||||||.|+..|+..++++|+.+|+++-.            
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~  146 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLA  146 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccc
Confidence            45578899999999999999999999999999999999999999999999999999999999875322            


Q ss_pred             -----------------------------------------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 018595          291 -----------------------------------------------LDKNKNTALHYAAGYGRKECVALLLENGAAVTL  323 (353)
Q Consensus       291 -----------------------------------------------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~  323 (353)
                                                                     .+..|.|.||+|+..|..++.++|+++|.+++.
T Consensus       147 e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~  226 (527)
T KOG0505|consen  147 EDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI  226 (527)
T ss_pred             cCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc
Confidence                                                           233588999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          324 QNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       324 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +|.+||||||.|+.-|+.+++++|++|+.
T Consensus       227 ~D~dgWtPlHAAA~Wg~~~~~elL~~~ga  255 (527)
T KOG0505|consen  227 KDYDGWTPLHAAAHWGQEDACELLVEHGA  255 (527)
T ss_pred             ccccCCCcccHHHHhhhHhHHHHHHHhhc
Confidence            99999999999999999999999999875

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.75  E-value=3.2e-18  Score=178.99  Aligned_cols=130  Identities=35%  Similarity=0.474  Sum_probs=112.7

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      +.....|.|+||+|+..|+.+++..|++.++..+.....|-++||.|...+...+++.++++|++++.++..|.||||+|
T Consensus       468 n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A  547 (1143)
T KOG4177|consen  468 NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVA  547 (1143)
T ss_pred             chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHH
Confidence            44456677777777777777777777777766666667777777777777777888888888889999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |.+|+..+|++|+++||+++.+++.|+||||.|+.+|+.+|+.+|+++|-
T Consensus       548 ~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA  597 (1143)
T KOG4177|consen  548 VHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGA  597 (1143)
T ss_pred             HhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999874

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=1.1e-17  Score=128.07  Aligned_cols=83  Identities=42%  Similarity=0.613  Sum_probs=79.3

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Q 018595          266 LHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK  345 (353)
Q Consensus       266 Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~  345 (353)
                      ||+||..|+.+++++|++.+.+++.    |+||||+||.+|+.+++++|+++|++++.+|.+|+||||+|+.+|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988877    999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q 018595          346 LLEKDAF  352 (353)
Q Consensus       346 ~Ll~~~~  352 (353)
                      +|+++|.
T Consensus        77 ~Ll~~g~   83 (89)
T PF12796_consen   77 LLLEHGA   83 (89)
T ss_dssp             HHHHTTT
T ss_pred             HHHHcCC
Confidence            9999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=3e-17  Score=152.40  Aligned_cols=130  Identities=20%  Similarity=0.209  Sum_probs=109.5

Q ss_pred             hhcCcchhhh---cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 018595          215 DNAGADEAEE---VGNEDESIVHHTASVGDAEGLKNALAAGADKDEE-DSEGRTALHFACGYGEVKCAQILLEAGANVDA  290 (353)
Q Consensus       215 ~~~~~~~~~~---~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~-d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~  290 (353)
                      ...|.+....   .+..|.||||+|+..|+.+++++|+++|+|++.+ +..|.||||+|+..++.+++++|+..|++++.
T Consensus        53 L~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~  132 (300)
T PHA02884         53 LKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINI  132 (300)
T ss_pred             HHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            3445554332   1457999999999999999999999999999986 56899999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       291 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +|..|.||||+|+..++..++.++.  |..   .+..+.+|++++   ++.+++++|+.|+.
T Consensus       133 kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        133 QTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             CCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            9999999999999999988876664  332   456678898875   36899999988764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.73  E-value=9e-18  Score=165.74  Aligned_cols=167  Identities=23%  Similarity=0.263  Sum_probs=143.1

Q ss_pred             HHHHHHHcCCHHHHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 018595          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (353)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~  251 (353)
                      .++++...++...+++.+..+...+-+              .......+..+..+..|.|+||+||..|+.++++.|++.
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~--------------l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~   71 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGL--------------LFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY   71 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCC--------------CCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc
Confidence            456777777777777766654441111              111222333455677999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Q 018595          252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP  331 (353)
Q Consensus       252 g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp  331 (353)
                      .+-++..|..|.+|||+|++.|+.++++.|+..+..+|.....|.||||.|+++|+.+++.+|+.+|+|..++|+.+.|+
T Consensus        72 ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~  151 (854)
T KOG0507|consen   72 EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETV  151 (854)
T ss_pred             hhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccH
Confidence            99999999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCC
Q 018595          332 IDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       332 L~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |++|+..|+.++|+.|++..+
T Consensus       152 ldlA~qfgr~~Vvq~ll~~~~  172 (854)
T KOG0507|consen  152 LDLASRFGRAEVVQMLLQKKF  172 (854)
T ss_pred             HHHHHHhhhhHHHHHHhhhcc
Confidence            999999999999999987654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.72  E-value=1.8e-17  Score=140.25  Aligned_cols=100  Identities=24%  Similarity=0.256  Sum_probs=92.7

Q ss_pred             hhcCCCCCcHHHHHHHcCCHH---HHHHHHHcCCCCCCCC-CCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCc
Q 018595          223 EEVGNEDESIVHHTASVGDAE---GLKNALAAGADKDEED-SEGRTALHFACGYGEVKCAQILLE-AGANVDALDKNKNT  297 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~---~v~~Ll~~g~d~~~~d-~~g~t~Lh~Aa~~g~~~~v~~Ll~-~gadi~~~d~~G~T  297 (353)
                      ...+..|.|+||+|+..|+.+   ++++|++.|++++.++ ..|+||||+|+..|+.+++++|+. .|++++.+|..|+|
T Consensus        49 ~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t  128 (154)
T PHA02736         49 LEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT  128 (154)
T ss_pred             HHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence            345788999999999999874   6889999999999998 599999999999999999999998 59999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC
Q 018595          298 ALHYAAGYGRKECVALLLENGAAVT  322 (353)
Q Consensus       298 pLh~A~~~g~~~~v~~Ll~~gad~~  322 (353)
                      |||+|+..|+.+++++|+.+|++++
T Consensus       129 pL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        129 PYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.71  E-value=8.7e-17  Score=160.70  Aligned_cols=140  Identities=16%  Similarity=0.154  Sum_probs=117.6

Q ss_pred             chhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CcHHHHHHhcCCH---HHHHHHHH
Q 018595          209 DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEG--RTALHFACGYGEV---KCAQILLE  283 (353)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g--~t~Lh~Aa~~g~~---~~v~~Ll~  283 (353)
                      .....+...|.+..   .......++.||..|+.++|++|+++|++++.+|..|  .||||+|+.....   +++++|+.
T Consensus       322 eiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs  398 (631)
T PHA02792        322 NVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP  398 (631)
T ss_pred             HHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh
Confidence            35566666666642   2235667899999999999999999999999888764  6999998776654   46889999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH--c--------CcHHHHHHHHhcC
Q 018595          284 AGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL--N--------SQHDVLKLLEKDA  351 (353)
Q Consensus       284 ~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~--~--------g~~~iv~~Ll~~~  351 (353)
                      +|+|+|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+.  .        ...+++++|+.++
T Consensus       399 ~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~  476 (631)
T PHA02792        399 YIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKL  476 (631)
T ss_pred             cCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999976  2        2256677777764

>PHA02741 hypothetical protein; Provisional

Probab=99.71  E-value=2e-16  Score=135.96  Aligned_cols=100  Identities=21%  Similarity=0.271  Sum_probs=92.0

Q ss_pred             hhcCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCCC-CCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCC
Q 018595          223 EEVGNEDESIVHHTASVGD----AEGLKNALAAGADKDEEDS-EGRTALHFACGYGEVKCAQILLE-AGANVDALDKNKN  296 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~----~~~v~~Ll~~g~d~~~~d~-~g~t~Lh~Aa~~g~~~~v~~Ll~-~gadi~~~d~~G~  296 (353)
                      ...+..|.||||+|+..|+    .+++++|+..|++++.++. .|+||||+|+..++.+++++|+. .|++++.+|..|+
T Consensus        54 n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~  133 (169)
T PHA02741         54 NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNK  133 (169)
T ss_pred             hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence            4557889999999999998    5899999999999999985 99999999999999999999997 5999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCC
Q 018595          297 TALHYAAGYGRKECVALLLENGAAVT  322 (353)
Q Consensus       297 TpLh~A~~~g~~~~v~~Ll~~gad~~  322 (353)
                      ||||+|+..++.+++++|++.++...
T Consensus       134 tpL~~A~~~~~~~iv~~L~~~~~~~~  159 (169)
T PHA02741        134 SPFELAIDNEDVAMMQILREIVATSR  159 (169)
T ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999876543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.70  E-value=2.8e-17  Score=172.26  Aligned_cols=125  Identities=21%  Similarity=0.164  Sum_probs=112.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------------CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEED--------------SEGRTALHFACGYGEVKCAQILLEAGANVDAL  291 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d--------------~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~  291 (353)
                      ...|.||||+||..|+.++|+.|+++|++++.++              ..|+||||+|+..|+.+++++|++.|+|++.+
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~  204 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA  204 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence            3569999999999999999999999999998642              36899999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcC---------CHHHHHHHHHCCCCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          292 DKNKNTALHYAAGYG---------RKECVALLLENGAAV-------TLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       292 d~~G~TpLh~A~~~g---------~~~~v~~Ll~~gad~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      |..|+||||+|+..+         ...|.+++++.++..       +..|.+|.||||+|+..|+.+++++|++.
T Consensus       205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            999999999999987         345777787776654       66799999999999999999999999983

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.69  E-value=3.7e-16  Score=138.10  Aligned_cols=127  Identities=39%  Similarity=0.502  Sum_probs=120.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCC-----HHHHHHHHHcCC---CCCCCCCCCC
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE-----VKCAQILLEAGA---NVDALDKNKN  296 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~-----~~~v~~Ll~~ga---di~~~d~~G~  296 (353)
                      .+..+.+++|.++..+...++.+++..|++++.++..|.|+||+|+..++     .+++++|++.|+   +.+.+|..|+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            35568899999999999999999999999999999999999999999999     999999999999   5666699999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       297 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ||||+|+..|+.+++++|++.|++++..+..|.|++++|+..++.+++.+|++.+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999998853

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.69  E-value=9.9e-17  Score=160.14  Aligned_cols=126  Identities=29%  Similarity=0.304  Sum_probs=118.1

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----------------------CCCCcHHHHHHhcCCHHHHHHH
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAAGADKDEED-----------------------SEGRTALHFACGYGEVKCAQIL  281 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d-----------------------~~g~t~Lh~Aa~~g~~~~v~~L  281 (353)
                      ..+.|.|+||+|+.+.+.++|+.|++.|+|++.+-                       +.|+.||-+||..++.+|+++|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            35789999999999999999999999999986421                       2588999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA--VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       282 l~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      +++|+|++.+|..|+|.||..+.+-..++..+++++|++  ...+|+.|.|||.+|++-|+.++.+.+++.
T Consensus       260 l~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  260 LAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999999  999999999999999999999999999886

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.69  E-value=6.6e-17  Score=120.49  Aligned_cols=104  Identities=34%  Similarity=0.541  Sum_probs=95.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 018595          232 IVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV  311 (353)
Q Consensus       232 ~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v  311 (353)
                      -+.|++++|.++-|+..+..|.++|..- .|++|||+|+.+|.++++++|+..|++++.+|+.|.|||..|+..||.+||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            3678889999999999999998887654 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHH
Q 018595          312 ALLLENGAAVTLQNMDGKTPIDVAK  336 (353)
Q Consensus       312 ~~Ll~~gad~~~~d~~g~TpL~~A~  336 (353)
                      ++|++.||+-...--+|.+.+..+-
T Consensus        84 klLL~~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhhcc
Confidence            9999999999999889987776543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.69  E-value=1.4e-16  Score=159.18  Aligned_cols=127  Identities=16%  Similarity=0.108  Sum_probs=113.6

Q ss_pred             cCCCCCcHHHHHHH-cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh-cCCHHHHHHHHHcCCCCC-------------
Q 018595          225 VGNEDESIVHHTAS-VGDAEGLKNALAAGADKDEEDSEGRTALHFACG-YGEVKCAQILLEAGANVD-------------  289 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~-~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~-~g~~~~v~~Ll~~gadi~-------------  289 (353)
                      .+-+|..++|+-|. .|++++|++|+.+|+|+|.++..|.|++|+|+. .++.+++++|+++|+|++             
T Consensus        67 ~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~  146 (631)
T PHA02792         67 KNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQ  146 (631)
T ss_pred             CccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhh
Confidence            35667789987655 689999999999999999999889999999966 699999999999998732             


Q ss_pred             -----------------------CCCCCCCcHHHHHHHcC-------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Q 018595          290 -----------------------ALDKNKNTALHYAAGYG-------RKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  339 (353)
Q Consensus       290 -----------------------~~d~~G~TpLh~A~~~g-------~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g  339 (353)
                                             ..|..|+||||+|+.++       +.+++++|+++|++++.+|.+|.||||+|+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        147 ITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             cccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcc
Confidence                                   34557999999999999       899999999999999999999999999999999


Q ss_pred             --cHHHHHHHHhcC
Q 018595          340 --QHDVLKLLEKDA  351 (353)
Q Consensus       340 --~~~iv~~Ll~~~  351 (353)
                        ..+++++|++..
T Consensus       227 ~i~~ei~~~L~~~~  240 (631)
T PHA02792        227 DIKREIFDALFDSN  240 (631)
T ss_pred             cchHHHHHHHHhcc
Confidence              899999999864

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.69  E-value=2.2e-16  Score=165.44  Aligned_cols=164  Identities=24%  Similarity=0.226  Sum_probs=115.1

Q ss_pred             CChhHHHHHHHcCCHHHHHHHhcCcc----------hHHHHHHHhccccCCc---hhhhhhhcCcchhhhcCCCCCcHHH
Q 018595          168 PSLKPILDEIESGGPSAMMKYWNDKD----------VLQKLGEAMGLAVGGD---ATTSADNAGADEAEEVGNEDESIVH  234 (353)
Q Consensus       168 p~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~t~Lh  234 (353)
                      +..+.++.++..|+...+.+.+.+..          -...|+.   .+..+.   ....+...+.     .+..|.|+||
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~---~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh   87 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFV---AAIENENLELTELLLNLSC-----RGAVGDTLLH   87 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHH---HHHhcChHHHHHHHHhCCC-----CCCcChHHHH
Confidence            34556777777777777766665411          1111220   122221   2333333333     3677999999


Q ss_pred             HHHHcC---CHHHHHHHHHcCCC------CC----CCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC---------
Q 018595          235 HTASVG---DAEGLKNALAAGAD------KD----EEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD---------  292 (353)
Q Consensus       235 ~Aa~~g---~~~~v~~Ll~~g~d------~~----~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d---------  292 (353)
                      .|+..+   ...++..++..+.+      ++    .....|.||||+||..|+.++|++|+++|++++.++         
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~  167 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQ  167 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCC
Confidence            998722   22333444443322      11    123579999999999999999999999999998653         


Q ss_pred             -----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Q 018595          293 -----KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  339 (353)
Q Consensus       293 -----~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g  339 (353)
                           ..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence                 35899999999999999999999999999999999999999999987

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.67  E-value=4.6e-17  Score=148.91  Aligned_cols=96  Identities=35%  Similarity=0.510  Sum_probs=87.7

Q ss_pred             CCCCCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCC--------------------------------------CC
Q 018595          255 KDEEDSEGRTALHFACGYGEVKCAQILLEAG-ANVDALDK--------------------------------------NK  295 (353)
Q Consensus       255 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g-adi~~~d~--------------------------------------~G  295 (353)
                      +|..|.+|+|+|||++.+.+.++|+.||+.| +++|.+++                                      .|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~g  340 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHG  340 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhc
Confidence            4668999999999999999999999999998 56666654                                      46


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          296 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       296 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      +|+|++|+.+|+.++|+.||..|||||++|.+|.|+|.+|+.+||.||+++||-.
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            6779999999999999999999999999999999999999999999999999864

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.66  E-value=1.6e-16  Score=141.39  Aligned_cols=105  Identities=29%  Similarity=0.360  Sum_probs=98.4

Q ss_pred             HHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Q 018595          248 ALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMD  327 (353)
Q Consensus       248 Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~  327 (353)
                      |-+..-|.|.-|..|.+||||||..|+..+|+.|+.+|+.+|..+.-..||||+|+.+|+.++|+.|++..+|+|..+..
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavneh   99 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH   99 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhcc
Confidence            33455688888999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          328 GKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       328 g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+|||||||.-|+..+++-|+.+|-
T Consensus       100 gntplhyacfwgydqiaedli~~ga  124 (448)
T KOG0195|consen  100 GNTPLHYACFWGYDQIAEDLISCGA  124 (448)
T ss_pred             CCCchhhhhhhcHHHHHHHHHhccc
Confidence            9999999999999999999988763

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.59  E-value=3.3e-15  Score=143.10  Aligned_cols=122  Identities=33%  Similarity=0.464  Sum_probs=112.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 018595          231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKEC  310 (353)
Q Consensus       231 t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~  310 (353)
                      -.+.-||..|+.+-|+.|+..|++++..+.+|.|+||.+|...+.+||++|+++|++||..|..|+||||.|+.+|+..+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            44667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCC-----------------------------------------------------------CCcCCCCCCH
Q 018595          311 VALLLENGAAV-----------------------------------------------------------TLQNMDGKTP  331 (353)
Q Consensus       311 v~~Ll~~gad~-----------------------------------------------------------~~~d~~g~Tp  331 (353)
                      +++|+.+||++                                                           ++.+..|-|.
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            99999999853                                                           3344569999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCC
Q 018595          332 IDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       332 L~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ||+|+.+|+.++.++|+++++
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~  222 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGY  222 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhcc
Confidence            999999999999999999875

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.58  E-value=5e-15  Score=148.10  Aligned_cols=129  Identities=27%  Similarity=0.317  Sum_probs=111.0

Q ss_pred             hhcCCCCCcHHHHHHHc---CCHHHHHHHHHcCCC----CC-CCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC---
Q 018595          223 EEVGNEDESIVHHTASV---GDAEGLKNALAAGAD----KD-EEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL---  291 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~g~d----~~-~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~---  291 (353)
                      ...+..|+|+||.|..+   ++.++++.|++.-..    +- ...+.|.||||+|+.+.+.++|++|++.||||+++   
T Consensus       137 ~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G  216 (782)
T KOG3676|consen  137 NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACG  216 (782)
T ss_pred             ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhc
Confidence            44578899999999984   466889999986422    22 23578999999999999999999999999998765   


Q ss_pred             ------C--------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          292 ------D--------------KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       292 ------d--------------~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                            |              ..|..||.+|++.++.+|+++|+++|||++.+|.+|+|.||..+.+-..++..++++++
T Consensus       217 ~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~g  296 (782)
T KOG3676|consen  217 AFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELG  296 (782)
T ss_pred             cccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcC
Confidence                  1              14789999999999999999999999999999999999999999988888999988865

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.57  E-value=9.3e-15  Score=144.65  Aligned_cols=127  Identities=24%  Similarity=0.298  Sum_probs=110.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      +..|.+|||+|++.|+.++++.|+..+..+|....+|.||||.|+.+|+.+++.+|+.+|+|.-.++..+.|+|.+||+.
T Consensus        79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qf  158 (854)
T KOG0507|consen   79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRF  158 (854)
T ss_pred             hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHh
Confidence            57788999999999999999999999988888889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCC--------CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          306 GRKECVALLLENGAAV--------TLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~--------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |..++|+.|++..-++        ..++..+-+|||+|+++||.+|++.|++.|+
T Consensus       159 gr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~  213 (854)
T KOG0507|consen  159 GRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF  213 (854)
T ss_pred             hhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC
Confidence            9999999998763221        2345577889999999999999999998876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.57  E-value=1.3e-14  Score=149.54  Aligned_cols=106  Identities=38%  Similarity=0.541  Sum_probs=100.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 018595          231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKEC  310 (353)
Q Consensus       231 t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~  310 (353)
                      +.|+.|+..|+.+.++.|++.|++++.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHC-------CCCCCCcCCCCCCHHHHHH
Q 018595          311 VALLLEN-------GAAVTLQNMDGKTPIDVAK  336 (353)
Q Consensus       311 v~~Ll~~-------gad~~~~d~~g~TpL~~A~  336 (353)
                      +++|+.+       |++++..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999       8999999998888877554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=1e-14  Score=138.96  Aligned_cols=117  Identities=28%  Similarity=0.322  Sum_probs=105.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 018595          232 IVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV  311 (353)
Q Consensus       232 ~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v  311 (353)
                      +|.-|+..|-+++|+.++..--|+...+.+|-|+||-|+..||.+||++||+.|++||..|.+||||||+|+.|++..+|
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            45567888999999999998889988999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCcC-CCCCCHHHHHH--HcCcHHHHHHHH
Q 018595          312 ALLLENGAAVTLQN-MDGKTPIDVAK--LNSQHDVLKLLE  348 (353)
Q Consensus       312 ~~Ll~~gad~~~~d-~~g~TpL~~A~--~~g~~~iv~~Ll  348 (353)
                      +.|++.|+.|-... .++.|+.+-+-  ..|+..|.+||-
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            99999999876443 47888888664  458899999884

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=4.3e-15  Score=103.56  Aligned_cols=55  Identities=55%  Similarity=0.807  Sum_probs=27.2

Q ss_pred             HHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Q 018595          281 LLEAG-ANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA  335 (353)
Q Consensus       281 Ll~~g-adi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A  335 (353)
                      ||+.| ++++.+|..|+||||+||.+|+.++|++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 77777777788888888888888888887777888888888888888776

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.54  E-value=1.9e-14  Score=107.39  Aligned_cols=86  Identities=28%  Similarity=0.453  Sum_probs=81.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHH
Q 018595          265 ALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL  344 (353)
Q Consensus       265 ~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv  344 (353)
                      -+.|++.+|.++-|+-.+..|.++|..- .|+||||||+-+|+.+++++|+..||+++.+|+.|-|||--|++.||..||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4688999999999999999998887644 799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q 018595          345 KLLEKDA  351 (353)
Q Consensus       345 ~~Ll~~~  351 (353)
                      ++|+++|
T Consensus        84 klLL~~G   90 (117)
T KOG4214|consen   84 KLLLQNG   90 (117)
T ss_pred             HHHHHcC
Confidence            9999987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.54  E-value=1.1e-13  Score=110.64  Aligned_cols=94  Identities=46%  Similarity=0.688  Sum_probs=90.1

Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Q 018595          258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL  337 (353)
Q Consensus       258 ~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~  337 (353)
                      ++..|.||||+|+..++.+++++|++.|.+++..+..|.||||+|+..+..+++++|+..|++++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhcC
Q 018595          338 NSQHDVLKLLEKDA  351 (353)
Q Consensus       338 ~g~~~iv~~Ll~~~  351 (353)
                      .++.+++++|++++
T Consensus        83 ~~~~~~~~~L~~~~   96 (126)
T cd00204          83 NGNLDVVKLLLKHG   96 (126)
T ss_pred             cCcHHHHHHHHHcC
Confidence            99999999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.51  E-value=1.3e-13  Score=122.95  Aligned_cols=121  Identities=26%  Similarity=0.369  Sum_probs=111.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCC
Q 018595          229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL-DKNKNTALHYAAGYGR  307 (353)
Q Consensus       229 g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~-d~~G~TpLh~A~~~g~  307 (353)
                      -..+|.-++..++.+....||..--.+|.+|..|.|+|..|+..|+.++|++||+.|+|+|.. +..+.||||+|+..|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            467888888999999999999886678999999999999999999999999999999999864 5669999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Q 018595          308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  349 (353)
Q Consensus       308 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  349 (353)
                      .+++++|++.|+.....|.-|+|+-..|+.-|+.+||..+-.
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            999999999999999999999999999999999999987643

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.50  E-value=6e-14  Score=97.02  Aligned_cols=52  Identities=42%  Similarity=0.696  Sum_probs=21.7

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 018595          263 RTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALL  314 (353)
Q Consensus       263 ~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~L  314 (353)
                      +||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            4444444444444444444444444444444444444444444444444444

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=2.3e-14  Score=99.86  Aligned_cols=55  Identities=44%  Similarity=0.719  Sum_probs=33.5

Q ss_pred             HHHcC-CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          248 ALAAG-ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       248 Ll~~g-~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ||++| ++++.+|..|.||||+||.+|+.++|++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            57778 88999999999999999999999999999999999999999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=7.7e-14  Score=96.48  Aligned_cols=54  Identities=44%  Similarity=0.642  Sum_probs=46.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Q 018595          295 KNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  348 (353)
Q Consensus       295 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  348 (353)
                      |+||||+||..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999999999999999999999999996

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=2e-13  Score=140.97  Aligned_cols=87  Identities=37%  Similarity=0.524  Sum_probs=84.6

Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Q 018595          264 TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV  343 (353)
Q Consensus       264 t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~i  343 (353)
                      +.||.|+..|+.++|++|++.|+++|.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q 018595          344 LKLLEKD  350 (353)
Q Consensus       344 v~~Ll~~  350 (353)
                      +++|+++
T Consensus       164 v~~Ll~~  170 (664)
T PTZ00322        164 VQLLSRH  170 (664)
T ss_pred             HHHHHhC
Confidence            9999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=7.3e-13  Score=126.41  Aligned_cols=85  Identities=28%  Similarity=0.261  Sum_probs=80.9

Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Q 018595          267 HFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL  346 (353)
Q Consensus       267 h~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~  346 (353)
                      .-|+..|.+++|+-.+..--|+...+.+|.|+||-|++.||.+||+||++.|++||..|.+||||||+|+.+++..+++.
T Consensus       555 LDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckq  634 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQ  634 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHH
Confidence            44788899999999998888998899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcC
Q 018595          347 LEKDA  351 (353)
Q Consensus       347 Ll~~~  351 (353)
                      |+++|
T Consensus       635 LVe~G  639 (752)
T KOG0515|consen  635 LVESG  639 (752)
T ss_pred             HHhcc
Confidence            99987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.39  E-value=1.7e-12  Score=114.47  Aligned_cols=103  Identities=37%  Similarity=0.468  Sum_probs=94.9

Q ss_pred             hhcCcchhhhcCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC---CCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 018595          215 DNAGADEAEEVGNEDESIVHHTASVGD-----AEGLKNALAAGA---DKDEEDSEGRTALHFACGYGEVKCAQILLEAGA  286 (353)
Q Consensus       215 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~-----~~~v~~Ll~~g~---d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga  286 (353)
                      ...+.+. ...+..|.|+||+|+..++     .++++.|++.|+   +.+.+|..|.||||+|+..|+.+++++|++.|+
T Consensus        93 ~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~  171 (235)
T COG0666          93 LASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA  171 (235)
T ss_pred             HHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCC
Confidence            4455555 7778999999999999999     999999999999   555669999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q 018595          287 NVDALDKNKNTALHYAAGYGRKECVALLLENG  318 (353)
Q Consensus       287 di~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g  318 (353)
                      +++..+..|.|+|++|+..++.+++..|+..+
T Consensus       172 ~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         172 DPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999965

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=1.2e-11  Score=110.41  Aligned_cols=93  Identities=29%  Similarity=0.373  Sum_probs=87.5

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE-EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~-~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      +..|..|.++|..|+..|+.++|+.||+.|+|+|. ++..++||||+|+..|+.++.++|++.|+..+..+.-|+|+-..
T Consensus        39 n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqm  118 (396)
T KOG1710|consen   39 NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQM  118 (396)
T ss_pred             hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHH
Confidence            55688999999999999999999999999999995 47899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHH
Q 018595          302 AAGYGRKECVALLL  315 (353)
Q Consensus       302 A~~~g~~~~v~~Ll  315 (353)
                      |+.-|+.+||..+-
T Consensus       119 AAFVG~H~CV~iIN  132 (396)
T KOG1710|consen  119 AAFVGHHECVAIIN  132 (396)
T ss_pred             HHHhcchHHHHHHh
Confidence            99999999998764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.29  E-value=1.6e-12  Score=132.77  Aligned_cols=122  Identities=28%  Similarity=0.403  Sum_probs=67.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCH
Q 018595          230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL-DKNKNTALHYAAGYGRK  308 (353)
Q Consensus       230 ~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~-d~~G~TpLh~A~~~g~~  308 (353)
                      .|+|..||..|+.+.|+.|+..|+++..+|..|.+||.+|+..||..+|+.|+.+.++++.+ |+.+.|+|.+||..|+.
T Consensus       758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~  837 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRT  837 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcc
Confidence            45555555555555555555555555555555555555555555555555555555555432 44455555555555555


Q ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       309 ~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ++|++||.+|++-..++-...|||.+|..-|+.+++.+|+.+|
T Consensus       838 ~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~G  880 (2131)
T KOG4369|consen  838 RVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSG  880 (2131)
T ss_pred             hHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcc
Confidence            5555555555555555555555555555555555555555544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.26  E-value=5.5e-12  Score=128.97  Aligned_cols=139  Identities=24%  Similarity=0.309  Sum_probs=105.4

Q ss_pred             hhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 018595          212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE-DSEGRTALHFACGYGEVKCAQILLEAGANVDA  290 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~-d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~  290 (353)
                      .++...|..+ +..+..|.++|.+|+-.|+..+|+.|+.+.++++.+ |..+.|+|.+||..|+.++|++||..|++...
T Consensus       774 ellv~rgani-ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankeh  852 (2131)
T KOG4369|consen  774 ELLVVRGANI-EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEH  852 (2131)
T ss_pred             HHHHHhcccc-cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccc
Confidence            3344444443 556777888888888888888888888888887765 67788888888888888888888888888877


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQ--NMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       291 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ++....|||.+|..-|..++|.+|+.+|+.|+.+  .+-|-.||.+|..+||.+.++.|++-|
T Consensus       853 rnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~g  915 (2131)
T KOG4369|consen  853 RNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPG  915 (2131)
T ss_pred             cchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhccc
Confidence            7777888888888888888888888888777654  356777888888888888777777654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.12  E-value=3.1e-11  Score=120.63  Aligned_cols=83  Identities=29%  Similarity=0.374  Sum_probs=53.1

Q ss_pred             hhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 018595          222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEED-SEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALH  300 (353)
Q Consensus       222 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d-~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh  300 (353)
                      .+..|..|+|+||+++..+...+++|||.+|+|+..+| ..|+||||.|+.+|+++|+-+||.+|+.+..+|.+|..||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            34455566666666666666666666666666666665 45666666666666666666666666666666666666666


Q ss_pred             HHHH
Q 018595          301 YAAG  304 (353)
Q Consensus       301 ~A~~  304 (353)
                      +-++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            5544

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.98  E-value=1.6e-09  Score=104.62  Aligned_cols=117  Identities=25%  Similarity=0.355  Sum_probs=106.8

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHH
Q 018595          233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN--VDALDKNKNTALHYAAGYGRKEC  310 (353)
Q Consensus       233 Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad--i~~~d~~G~TpLh~A~~~g~~~~  310 (353)
                      +..|+..+++--+..+...|.++-.++...+|.||+|+..|+-++|+|+|++|..  ++..|..|.|+||-|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            4566777777777777788989888999999999999999999999999999854  67788899999999999999999


Q ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Q 018595          311 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  349 (353)
Q Consensus       311 v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  349 (353)
                      +++|++.||.+...|..|.||-.-|...|..++..||..
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            999999999999999999999999999999999999975

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.97  E-value=2.9e-09  Score=103.10  Aligned_cols=88  Identities=36%  Similarity=0.519  Sum_probs=77.8

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCC--CCC--CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 018595          233 VHHTASVGDAEGLKNALAAGAD--KDE--EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK  308 (353)
Q Consensus       233 Lh~Aa~~g~~~~v~~Ll~~g~d--~~~--~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~  308 (353)
                      |..|+...++..+-.||.+|..  +|.  -+..|+|+||+||..|++.+.++|+.+|+|+-.+|..|+|+|.||-..|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            5567777888889999999854  332  356789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCC
Q 018595          309 ECVALLLENGAA  320 (353)
Q Consensus       309 ~~v~~Ll~~gad  320 (353)
                      +|+.+|+++|..
T Consensus       708 ec~d~llq~gcp  719 (749)
T KOG0705|consen  708 ECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHcCCC
Confidence            999999999864

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.96  E-value=4.5e-10  Score=112.53  Aligned_cols=83  Identities=33%  Similarity=0.513  Sum_probs=79.5

Q ss_pred             CCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Q 018595          255 KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN-KNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPID  333 (353)
Q Consensus       255 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~-G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~  333 (353)
                      .|.+|..|+|+||+++..+...+++|||++|+|++.+|.+ |+||||-|+.+|+++|+-+||.+|+.+.++|++|..||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            4668999999999999999999999999999999999987 999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 018595          334 VAKL  337 (353)
Q Consensus       334 ~A~~  337 (353)
                      .-+.
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8776

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.95  E-value=3.1e-09  Score=101.21  Aligned_cols=88  Identities=28%  Similarity=0.334  Sum_probs=73.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 018595          232 IVHHTASVGDAEGLKNALAAGADKDEED-SEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKEC  310 (353)
Q Consensus       232 ~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d-~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~  310 (353)
                      -||-+++.|+++++-.||..|+++|..+ ..|.||||.|+..|+.--+++|+-+|+|++..|.+|.||+.||-..||-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            3788888888888888888888888765 678888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHCCC
Q 018595          311 VALLLENGA  319 (353)
Q Consensus       311 v~~Ll~~ga  319 (353)
                      .+-|++.-.
T Consensus       216 aeRl~e~~y  224 (669)
T KOG0818|consen  216 AERLVEIQY  224 (669)
T ss_pred             HHHHHHHHH
Confidence            888876543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.93  E-value=1.1e-09  Score=103.93  Aligned_cols=89  Identities=29%  Similarity=0.412  Sum_probs=55.4

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcC
Q 018595          261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNS  339 (353)
Q Consensus       261 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~TpL~~A~~~g  339 (353)
                      ++--.+.+|+..|++..++-+.-.|.|++.+|.+.+|+||+|+..|+.+++++|++. +.+++.+|..|+|||+-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            344555666666666666666666666666666666666666666666666666653 5666666666666666666666


Q ss_pred             cHHHHHHHHh
Q 018595          340 QHDVLKLLEK  349 (353)
Q Consensus       340 ~~~iv~~Ll~  349 (353)
                      |.+++++|.+
T Consensus       585 h~~v~k~L~~  594 (622)
T KOG0506|consen  585 HKEVVKLLEE  594 (622)
T ss_pred             cHHHHHHHHH
Confidence            6666666654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.91  E-value=5.1e-09  Score=99.76  Aligned_cols=85  Identities=31%  Similarity=0.390  Sum_probs=80.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Q 018595          265 ALHFACGYGEVKCAQILLEAGANVDALDKN-KNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV  343 (353)
Q Consensus       265 ~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~-G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~i  343 (353)
                      -||-++..|+++..--||..|+++|..+.+ |.||||+|++.|+.--+++|+-+|||+...|.+|.||++||...||.++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            489999999999998999999999998875 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 018595          344 LKLLEK  349 (353)
Q Consensus       344 v~~Ll~  349 (353)
                      .+.|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            988876

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.90  E-value=3.7e-09  Score=102.35  Aligned_cols=87  Identities=24%  Similarity=0.303  Sum_probs=77.7

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCC--C--CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Q 018595          266 LHFACGYGEVKCAQILLEAGANV--D--ALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH  341 (353)
Q Consensus       266 Lh~Aa~~g~~~~v~~Ll~~gadi--~--~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~  341 (353)
                      |..|+...++..+-+||.+|...  |  .-+..|+|+||+||..|+..+.++|+-+|+|+..+|..|+|+|.||...|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            45677778888899999998543  3  2355689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC
Q 018595          342 DVLKLLEKDAF  352 (353)
Q Consensus       342 ~iv~~Ll~~~~  352 (353)
                      +|+.+|+++||
T Consensus       708 ec~d~llq~gc  718 (749)
T KOG0705|consen  708 ECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHcCC
Confidence            99999999987

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.89  E-value=1.8e-09  Score=102.37  Aligned_cols=92  Identities=33%  Similarity=0.377  Sum_probs=85.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcC
Q 018595          228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA-GANVDALDKNKNTALHYAAGYG  306 (353)
Q Consensus       228 ~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~-gadi~~~d~~G~TpLh~A~~~g  306 (353)
                      ++...+.+|+..|++..++.+.-.|.|++.+|++.+|+||.|+..|+++++++||+. +.+.+.+|++|+|||.-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            344578999999999999999999999999999999999999999999999999976 6999999999999999999999


Q ss_pred             CHHHHHHHHHCCC
Q 018595          307 RKECVALLLENGA  319 (353)
Q Consensus       307 ~~~~v~~Ll~~ga  319 (353)
                      |.+++++|-+.-.
T Consensus       585 h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  585 HKEVVKLLEEAQY  597 (622)
T ss_pred             cHHHHHHHHHHhc
Confidence            9999999988644

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.87  E-value=4.6e-09  Score=101.13  Aligned_cols=62  Identities=27%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Q 018595          286 ANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL  347 (353)
Q Consensus       286 adi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~L  347 (353)
                      ..++.+|..|+||||+|+..|+.++++.|+.+||++..+|++||+|||.|+.+|+.+++..+
T Consensus        46 ~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~v  107 (560)
T KOG0522|consen   46 LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEV  107 (560)
T ss_pred             ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHH
Confidence            33444444555555555555555555555555555555555555555555555554443333

>PF13606 Ank_3: Ankyrin repeat

Probab=98.82  E-value=5.7e-09  Score=62.68  Aligned_cols=29  Identities=55%  Similarity=0.676  Sum_probs=18.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q 018595          294 NKNTALHYAAGYGRKECVALLLENGAAVT  322 (353)
Q Consensus       294 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~  322 (353)
                      +|+||||+||..|+.++|++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            35666666666666666666666666664

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.78  E-value=1.1e-08  Score=63.00  Aligned_cols=32  Identities=44%  Similarity=0.707  Sum_probs=21.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Q 018595          294 NKNTALHYAAGYGRKECVALLLENGAAVTLQN  325 (353)
Q Consensus       294 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  325 (353)
                      +|+||||+|+.+|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36666666666666666666666666666655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.71  E-value=1.8e-08  Score=60.44  Aligned_cols=29  Identities=41%  Similarity=0.732  Sum_probs=22.4

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 018595          261 EGRTALHFACGYGEVKCAQILLEAGANVD  289 (353)
Q Consensus       261 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~  289 (353)
                      .|+||||+||..|+.++|++||++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36778888888888888888888777776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.65  E-value=4.6e-08  Score=60.14  Aligned_cols=32  Identities=38%  Similarity=0.692  Sum_probs=26.3

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 018595          261 EGRTALHFACGYGEVKCAQILLEAGANVDALD  292 (353)
Q Consensus       261 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d  292 (353)
                      +|+||||+|+.+|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47888888888888888888888888888766

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.61  E-value=9.9e-08  Score=92.13  Aligned_cols=87  Identities=31%  Similarity=0.470  Sum_probs=75.0

Q ss_pred             cHHHHHHHcCCHHHHHHHH--HcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 018595          231 SIVHHTASVGDAEGLKNAL--AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK  308 (353)
Q Consensus       231 t~Lh~Aa~~g~~~~v~~Ll--~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~  308 (353)
                      -+||+++...+.+-+..++  +.+..++.+|..|+||||+|+..|+.+.++.|+..|+++..++..|++|||-|+.+|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            4589998887776665543  33456788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHC
Q 018595          309 ECVALLLEN  317 (353)
Q Consensus       309 ~~v~~Ll~~  317 (353)
                      .++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888777654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.58  E-value=4.9e-08  Score=100.97  Aligned_cols=125  Identities=29%  Similarity=0.332  Sum_probs=103.5

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcCCHHHHHHH-HHcCCCCCCCCCCCCcHHHHH
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVKCAQIL-LEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~L-l~~gadi~~~d~~G~TpLh~A  302 (353)
                      ..-.|.+.+|+++..++..+++.+++- |......|..|.-.+|+|+ .++.++.-+| ...|..++.+|..|+||||||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchH
Confidence            356789999999999999999999986 6666677888889999954 4555554444 567899999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCC------CcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          303 AGYGRKECVALLLENGAAVT------LQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      ..+|+..++..|++.|++..      ...-.|.|+..+|..+|+..+..+|-+.
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999998877543      3344699999999999999999888653

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.57  E-value=6.2e-08  Score=100.57  Aligned_cols=97  Identities=35%  Similarity=0.507  Sum_probs=85.9

Q ss_pred             cCCCCCC--CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Q 018595          251 AGADKDE--EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG  328 (353)
Q Consensus       251 ~g~d~~~--~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g  328 (353)
                      .+++++-  .-..|.|+||.|+.++..-++++|++.|+++|..|..|+||||.+...|+...+..|+++|++.++.+.+|
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~  722 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDG  722 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccC
Confidence            3444443  23568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHcCcHHHHHHH
Q 018595          329 KTPIDVAKLNSQHDVLKLL  347 (353)
Q Consensus       329 ~TpL~~A~~~g~~~iv~~L  347 (353)
                      .+||++|....+.+++-+|
T Consensus       723 ~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  723 KLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cchhhHHhhhccccHHHHH
Confidence            9999999877766666554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.55  E-value=2.6e-07  Score=89.64  Aligned_cols=93  Identities=30%  Similarity=0.367  Sum_probs=85.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAAGAD--KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d--~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      .+.+..++||+|+..|+-++|+++|++|..  ++..|..|.|+||.|+..++..+.++|++.|+.+...|..|.||-.-|
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~era  974 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERA  974 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHH
Confidence            356678999999999999999999999965  566789999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHC
Q 018595          303 AGYGRKECVALLLEN  317 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~  317 (353)
                      -..|..+++.||-.+
T Consensus       975 qqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  975 QQAGDPDLAAYLESR  989 (1004)
T ss_pred             HhcCCchHHHHHhhh
Confidence            999999999999754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.34  E-value=1.2e-06  Score=81.40  Aligned_cols=84  Identities=21%  Similarity=0.285  Sum_probs=63.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 018595          231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKEC  310 (353)
Q Consensus       231 t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~  310 (353)
                      --|..||+.|+++.|++|++.|+++|.+|....+||.+|+-.||..+|++|+++|+-...-...|.. -||++.+.+  |
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R-C~YgaLnd~--I  114 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR-CHYGALNDR--I  114 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch-hhhhhhhHH--H
Confidence            3478899999999999999999999999999999999999999999999999999866543444543 345544433  3


Q ss_pred             HHHHHHC
Q 018595          311 VALLLEN  317 (353)
Q Consensus       311 v~~Ll~~  317 (353)
                      =+.|++.
T Consensus       115 R~mllsy  121 (516)
T KOG0511|consen  115 RRMLLSY  121 (516)
T ss_pred             HHHHHHH
Confidence            3444443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.34  E-value=1.8e-06  Score=87.97  Aligned_cols=118  Identities=24%  Similarity=0.226  Sum_probs=98.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 018595          228 EDESIVHHTASVGDAEGLKNALAAG----ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAA  303 (353)
Q Consensus       228 ~g~t~Lh~Aa~~g~~~~v~~Ll~~g----~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~  303 (353)
                      .++--...|+..|+.-.|+..++..    .++|..|.-|+++||+|+.+.+.+++++|++.+..+  .     .+|-+|+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--g-----dALL~aI   96 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--G-----DALLLAI   96 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--c-----hHHHHHH
Confidence            3445577899999999999998753    356778999999999999999999999999997666  3     3899999


Q ss_pred             HcCCHHHHHHHHHCCCCC----------CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          304 GYGRKECVALLLENGAAV----------TLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       304 ~~g~~~~v~~Ll~~gad~----------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ..|..++|++++.+-...          ...-.-+.|||.+|+..+++||+++|++.|.
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            999999999999874332          1222357899999999999999999998763

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.30  E-value=1.4e-06  Score=73.89  Aligned_cols=70  Identities=29%  Similarity=0.274  Sum_probs=62.3

Q ss_pred             CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 018595          252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAG-ANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV  321 (353)
Q Consensus       252 g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g-adi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~  321 (353)
                      +.++|.+|..|||+|+.|+..|..+.+.||+.+| +.+...|..|.+++.+|-..|..++|..|.+.-.+-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4578889999999999999999999999999999 889999999999999999999999999998874433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.25  E-value=9.1e-07  Score=92.02  Aligned_cols=90  Identities=32%  Similarity=0.406  Sum_probs=83.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      -..|.|+||.|+..|..-++++|++.|+++|..|..|+||||.+...|+...+..|+++|++.+..+..|.+||++|...
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            35578999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCHHHHHHHH
Q 018595          306 GRKECVALLL  315 (353)
Q Consensus       306 g~~~~v~~Ll  315 (353)
                      .+.+++-+|.
T Consensus       733 ~~~d~~~l~~  742 (785)
T KOG0521|consen  733 ANADIVLLLR  742 (785)
T ss_pred             ccccHHHHHh
Confidence            7777766554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.17  E-value=5.6e-06  Score=84.42  Aligned_cols=127  Identities=21%  Similarity=0.159  Sum_probs=99.2

Q ss_pred             CCChhHHHHHHHcCCHHHHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHH
Q 018595          167 DPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLK  246 (353)
Q Consensus       167 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~  246 (353)
                      ++..+.++..++.|+...+.+.+....+ ..+.                      .+-.|.-|+++|++|..+.+.++++
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~-~~ln----------------------inc~d~lGr~al~iai~nenle~~e   79 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAV-SKLN----------------------INCRDPLGRLALHIAIDNENLELQE   79 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccc-cccc----------------------hhccChHhhhceecccccccHHHHH
Confidence            4566688888888888887776655444 2221                      1344777999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC----------CCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 018595          247 NALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD----------ALDKNKNTALHYAAGYGRKECVALLLE  316 (353)
Q Consensus       247 ~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~----------~~d~~G~TpLh~A~~~g~~~~v~~Ll~  316 (353)
                      +|++++..+       .-+|.+|+..|.+++|++++.+-....          ..-..+.|||.+||.+++.+|+++|+.
T Consensus        80 LLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~  152 (822)
T KOG3609|consen   80 LLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLT  152 (822)
T ss_pred             HHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHH
Confidence            999987654       347888999999999999998743321          122357899999999999999999999


Q ss_pred             CCCCCCC
Q 018595          317 NGAAVTL  323 (353)
Q Consensus       317 ~gad~~~  323 (353)
                      +|+++..
T Consensus       153 kg~~i~~  159 (822)
T KOG3609|consen  153 RGHCIPI  159 (822)
T ss_pred             cCCCCCC
Confidence            9998743

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.13  E-value=6.7e-06  Score=76.63  Aligned_cols=75  Identities=36%  Similarity=0.512  Sum_probs=64.1

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Q 018595          263 RTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN  338 (353)
Q Consensus       263 ~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~  338 (353)
                      .--|..||+.|+++.|++|++.|.++|.+|.....||.+|+.+||..+|++|+++||-...-..+|... ||++.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh
Confidence            335889999999999999999999999999999999999999999999999999999766555566654 444443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.13  E-value=6.1e-06  Score=70.17  Aligned_cols=71  Identities=17%  Similarity=0.075  Sum_probs=57.8

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAG-ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK  293 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g-~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~  293 (353)
                      +..|..|+|+|+.|+..|+.+.|.+|+..| +.+...|..|.+++.+|-..|..++|..|.+.-.+-...+.
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            556778889998888888888889998888 77888888888888888888888888888887555544443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.91  E-value=4.9e-06  Score=86.51  Aligned_cols=94  Identities=17%  Similarity=0.221  Sum_probs=80.4

Q ss_pred             CCCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHH
Q 018595          257 EEDSEGRTALHFACGYGEVKCAQILLEA-GANVDALDKNKNTALHYAAGYGRKECVALLL-ENGAAVTLQNMDGKTPIDV  334 (353)
Q Consensus       257 ~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~-gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~g~TpL~~  334 (353)
                      .....|.|.+|+++..+...+++.+++- |..-...|..|.-.+|+ |..++.+++-+|+ -+|..++++|.+||||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3457899999999999999999999986 66666778888889999 6677777776665 4689999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcC
Q 018595          335 AKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       335 A~~~g~~~iv~~Ll~~~  351 (353)
                      |..+|+..++..|+.-+
T Consensus       648 Aa~~G~e~l~a~l~~lg  664 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELG  664 (975)
T ss_pred             HhhcCHHHHHHHHHHhc
Confidence            99999999999998643

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.37  E-value=0.00031  Score=67.88  Aligned_cols=63  Identities=30%  Similarity=0.427  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Q 018595          274 EVKCAQILLEAGANVDA------LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK  336 (353)
Q Consensus       274 ~~~~v~~Ll~~gadi~~------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~  336 (353)
                      -...|++|.+++.+.|.      .+..--|+||||+..|..+||.+||+.|+|+..+|..|.||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            35678888888877654      2444668999999999999999999999999999999999999877

>smart00248 ANK ankyrin repeats

Probab=97.04  E-value=0.0012  Score=37.23  Aligned_cols=27  Identities=48%  Similarity=0.658  Sum_probs=14.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 018595          295 KNTALHYAAGYGRKECVALLLENGAAV  321 (353)
Q Consensus       295 G~TpLh~A~~~g~~~~v~~Ll~~gad~  321 (353)
                      |.||||+|+..++.+++++|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.90  E-value=0.0017  Score=62.86  Aligned_cols=63  Identities=22%  Similarity=0.318  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 018595          241 DAEGLKNALAAGADKDE------EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAA  303 (353)
Q Consensus       241 ~~~~v~~Ll~~g~d~~~------~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~  303 (353)
                      -...|++|.+++++.|.      .+..-.|+||+|+..|..++|.+||+.|+|...+|..|+||+.++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            35678899998877653      3456789999999999999999999999999999999999999987

>smart00248 ANK ankyrin repeats

Probab=96.85  E-value=0.0022  Score=36.12  Aligned_cols=27  Identities=41%  Similarity=0.818  Sum_probs=18.6

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 018595          262 GRTALHFACGYGEVKCAQILLEAGANV  288 (353)
Q Consensus       262 g~t~Lh~Aa~~g~~~~v~~Ll~~gadi  288 (353)
                      |.|++|+|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            566777777777777777777766654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.32  E-value=0.17  Score=43.32  Aligned_cols=110  Identities=13%  Similarity=0.086  Sum_probs=68.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHH----HHHHHcCCCCCCCCCC--CCcHHHHH
Q 018595          229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCA----QILLEAGANVDALDKN--KNTALHYA  302 (353)
Q Consensus       229 g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v----~~Ll~~gadi~~~d~~--G~TpLh~A  302 (353)
                      .++++-.||+..+.++|+|+-..   +..  .+-.+.+-+|....+.+..    .+++++.......|..  =.--|.+|
T Consensus        76 ~q~LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a  150 (192)
T PF03158_consen   76 NQELFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKA  150 (192)
T ss_pred             HHHHHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHH
Confidence            45566667777777777776322   111  1223445556666655542    1222322111111100  01247889


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  349 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  349 (353)
                      +..|....+.-.+.+|.+++.      +.|..|+.+++..++.+++.
T Consensus       151 ~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  151 AAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            999999999999999988863      79999999999999999875

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.04  E-value=0.13  Score=45.41  Aligned_cols=114  Identities=16%  Similarity=0.224  Sum_probs=66.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHH--c
Q 018595          232 IVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD----KNKNTALHYAAG--Y  305 (353)
Q Consensus       232 ~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d----~~G~TpLh~A~~--~  305 (353)
                      .|--|+...+++.+.-++...-       .-.++|-++...+..+++-+|+..- .....|    ..+.--+-|+..  .
T Consensus       156 sledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~  227 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHS  227 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcC
Confidence            3555666666666555543221       1245666677667777777776541 111111    112223444432  3


Q ss_pred             CCHHHHHHHHHCC-CCCCC---cCCCCCCHHHHHHHcCcHHHHHHHHhcCCC
Q 018595          306 GRKECVALLLENG-AAVTL---QNMDGKTPIDVAKLNSQHDVLKLLEKDAFL  353 (353)
Q Consensus       306 g~~~~v~~Ll~~g-ad~~~---~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~l  353 (353)
                      ....++++++++| +++|.   +-+.|.|-|+-|.++++.+++.+|+++|-|
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            3467778888777 56653   345788888888888888888888888753

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.50  E-value=0.59  Score=41.46  Aligned_cols=91  Identities=16%  Similarity=0.182  Sum_probs=65.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHhc--CCHHHHHHHHHcC-CCCCCC---CCCCCcHH
Q 018595          230 ESIVHHTASVGDAEGLKNALAAG----ADKDEEDSEGRTALHFACGY--GEVKCAQILLEAG-ANVDAL---DKNKNTAL  299 (353)
Q Consensus       230 ~t~Lh~Aa~~g~~~~v~~Ll~~g----~d~~~~d~~g~t~Lh~Aa~~--g~~~~v~~Ll~~g-adi~~~---d~~G~TpL  299 (353)
                      .++|-++...+..+++-+|+.+-    .|+-.- ..+.--+-++.+.  -+..++++.|.+| +++|.+   -..|.|-|
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtML  258 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTML  258 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHH
Confidence            46677777778888988888752    122111 1222234444433  3678999999998 777753   34699999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCC
Q 018595          300 HYAAGYGRKECVALLLENGAAV  321 (353)
Q Consensus       300 h~A~~~g~~~~v~~Ll~~gad~  321 (353)
                      .-|..+++.+++.+||++||-.
T Consensus       259 DNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  259 DNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HhHHhcCcHHHHHHHHHcCccc
Confidence            9999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=92.18  E-value=0.1  Score=33.22  Aligned_cols=19  Identities=21%  Similarity=0.560  Sum_probs=12.7

Q ss_pred             cCCCCccHHHHHHHHhcCC
Q 018595           63 GLLNDPSIKELAEQIAKDP   81 (353)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~p   81 (353)
                      +++.||.+..+.++|++||
T Consensus         6 ~~l~~P~~~~~l~~~~~nP   24 (41)
T smart00727        6 LRLQNPQVQSLLQDMQQNP   24 (41)
T ss_pred             HHHcCHHHHHHHHHHHHCH
Confidence            3556777777777777777

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=89.64  E-value=5.7  Score=34.22  Aligned_cols=83  Identities=22%  Similarity=0.192  Sum_probs=58.3

Q ss_pred             CCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCCC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          228 EDESIVHHTASVGDAEGL----KNALAAGADKDEED--SEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       228 ~g~t~Lh~Aa~~g~~~~v----~~Ll~~g~d~~~~d--~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      +-.+.+.+|....+++..    ..+++........|  .--..-|.+|+..|-...+.-.+++|.+++.      ++|..
T Consensus       103 ~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~  176 (192)
T PF03158_consen  103 NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQ  176 (192)
T ss_pred             CchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHH
Confidence            346778888888887652    12223321111111  0112346789999999999999999998874      69999


Q ss_pred             HHHcCCHHHHHHHHH
Q 018595          302 AAGYGRKECVALLLE  316 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~  316 (353)
                      |+.+++.+++.+++.
T Consensus       177 Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  177 AVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHhhHHHHHHHhhc
Confidence            999999999999874

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.93  E-value=0.82  Score=33.40  Aligned_cols=48  Identities=29%  Similarity=0.385  Sum_probs=39.5

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 018595          263 RTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN  317 (353)
Q Consensus       263 ~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~  317 (353)
                      ...+..|+..|+.++++.+++.+ .++      ...+..|+.+-+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            35688999999999999998765 222      3479999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PTZ00458 acyl CoA binding protein; Provisional

Probab=82.70  E-value=3  Score=31.65  Aligned_cols=71  Identities=13%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhccCCcCCCCCCCChHHHHHHHHHhhc------CcHHHHHHHHHhhhhcCCHHHHhhhhhcCCCCChhH
Q 018595           83 FNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQ------NPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQ  156 (353)
Q Consensus        83 ~~~~a~q~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~------nP~~~~mae~~g~~~m~dp~~~~m~e~l~~~~~~~~  156 (353)
                      |.+.++.+.+.-.    ....++.+.++||+-++|.+.      .|.++.+..+..         +..|..+++....+.
T Consensus         5 F~~A~~~v~~~~~----~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raK---------w~AW~~l~~ms~~eA   71 (90)
T PTZ00458          5 FEECVSFINSLPK----TVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKK---------YEAWKSIENLNREDA   71 (90)
T ss_pred             HHHHHHHHHhCCC----CCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHH---------HHHHHHcCCCCHHHH
Confidence            7777777754111    124577888899999999875      566777766654         888999999888888


Q ss_pred             HHHHHHHhhc
Q 018595          157 IEERMAKIKE  166 (353)
Q Consensus       157 ~~~~l~~l~~  166 (353)
                      ...++..+.+
T Consensus        72 ~~~YI~l~~~   81 (90)
T PTZ00458         72 KKRYVEIVTE   81 (90)
T ss_pred             HHHHHHHHHH
Confidence            8777766554

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=81.56  E-value=2.8  Score=30.51  Aligned_cols=48  Identities=19%  Similarity=0.197  Sum_probs=40.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 018595          230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA  284 (353)
Q Consensus       230 ~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~  284 (353)
                      ...|..|+..|+.++++.+++.+ .++      ...+..|+...+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            46789999999999999999765 221      4579999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism]

Probab=81.27  E-value=4.4  Score=33.53  Aligned_cols=69  Identities=17%  Similarity=0.265  Sum_probs=53.5

Q ss_pred             cHHHHHHHHHHHhccCCcCCCCCCCChHHHHHHHHHhhc------CcHHHHHHHHHhhhhcCCHHHHhhhhhcCCCCChh
Q 018595           82 AFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQ------NPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKD  155 (353)
Q Consensus        82 ~~~~~a~q~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~------nP~~~~mae~~g~~~m~dp~~~~m~e~l~~~~~~~  155 (353)
                      .|...++.++.-...      .+..+.++||+.++|.+.      .|.++.+..+..         |..|+.++.....+
T Consensus         8 ~Fe~a~~~~~~l~~~------p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~K---------w~AW~~l~~~s~~e   72 (142)
T KOG0817|consen    8 KFEAAAEAVKNLKKK------PSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAK---------WQAWNSLGGMSKEE   72 (142)
T ss_pred             HHHHHHHHHHhcccC------CCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHH---------HHHHHhcCCCCHHH
Confidence            477777777654433      345577899999999776      889999988876         88899999999888


Q ss_pred             HHHHHHHHhh
Q 018595          156 QIEERMAKIK  165 (353)
Q Consensus       156 ~~~~~l~~l~  165 (353)
                      .+..++..+.
T Consensus        73 A~~~Yv~~~~   82 (142)
T KOG0817|consen   73 AMEAYVEKVE   82 (142)
T ss_pred             HHHHHHHHHH
Confidence            8887776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	353
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-20
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-19
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-19
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-17
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-15
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-15
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-15
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-14
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-14
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-14
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		8e-14
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-13
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-13
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-13
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-13
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-13
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-13
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-13
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-13
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-13
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-13
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-13
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-12
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-12
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-12
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-12
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-12
3deo_A	183	Structural Basis For Specific Substrate Recognition		7e-12
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		8e-12
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		9e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-11
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		2e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-11
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-11
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-10
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-10
1uoh_A	226	Human Gankyrin Length = 226		5e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-10
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		8e-10
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-09
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		9e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		1e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-08
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		2e-08
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-08
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		4e-08
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		5e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		6e-08
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		8e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		9e-08
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-07
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		5e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-06
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		2e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-06
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		3e-06
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		1e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-05
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-05
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-05
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-05
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		2e-05
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		3e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		5e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		5e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-04
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		3e-04
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		3e-04
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		3e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		4e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		6e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 75/117 (64%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H+ A  G  E +K  ++ GAD + +DS+GRT LH+A   G  +  ++L+  GA+V+A D
Sbjct: 41  LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            +  T LHYAA  G KE V LL+  GA V   + DG+TP+D+A+ +   +++KLLEK
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 74/117 (63%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +HH A  G  E +K  ++ GAD + +DS+GRT LH A   G  +  ++L+  GA+V+A D
Sbjct: 41  LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            +  T LH+AA  G KE V LL+  GA V   + DG+TP+D+A+ +   +V+KLLEK
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 73/117 (62%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H+ A  G  E +K  L+ GAD + +DS+GRT LH+A   G  +  ++LL  GA+ +A D
Sbjct: 41  LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            +  T LHYAA  G KE V LLL  GA     + DG+TP+D+A+ +   +++KLLEK
Sbjct: 101 SDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 71/115 (61%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G  E +K  L AGAD + +D  GRT LH A   G ++  ++LLEAGA+V+A D
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           KN  T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+KLL
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           N  T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+KLL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 70/117 (59%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G  E +K  L+ GAD + +DS+G+T LH A   G  +  ++LL  GA+ +A D
Sbjct: 41  LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            +  T LH AA  G KE V LLL  GA     + DG+TP+D+A+ +   +V+KLLEK
Sbjct: 101 SDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 72/119 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G  E ++  L AGAD + +D +G T LH A   G ++  ++LL+AGA+V+A D
Sbjct: 39  LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
           K+  T LH AA  G  E V +LL+ GA V  Q+  GKTP D+A  N   D+ ++L+K A
Sbjct: 99  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 71/119 (59%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G  E ++  L AGAD + +D +G T LH A   G ++  ++LL+AGA+V+A D
Sbjct: 39  LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
           K+  T LH AA  G  E V +LL+ GA V  Q+  GKTP D+A      D+ ++L+K A
Sbjct: 99  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 69/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G  E ++  L  GAD D  D  G T LH A  +G ++  ++LL+ GA+V+A+D
Sbjct: 51  LHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            +  T LH AA +G  E V +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 111 SDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 71/122 (58%)
Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
           N+  + +H  AS G  E ++  L  GAD +  D  G T LH A   G ++  ++LL+ GA
Sbjct: 45  NDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 346
           +V+A D + +T LH AA YG  E V +LL++GA V  Q+  GKT  D++  N   D+ ++
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 347 LE 348
           L+
Sbjct: 165 LQ 166

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 68/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G  E ++  L  GAD + +DS G T LH A   G ++  ++LL+ GA+V+A D
Sbjct: 51  LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            N  T LH AA  G  E V +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 111 HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 68/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G  E ++  L  GAD + +DS G T LH A   G ++  ++LL+ GA+V+A D
Sbjct: 51  LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            +  T LH AA  G  E V +LL+NGA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 111 SHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 69/116 (59%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G  E ++  L AGAD + +D +G T LH A   G ++  ++LL+AGA+V+A D
Sbjct: 51  LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
           K+  T LH AA  G  E V +LL+ GA V  Q+  GKT  D++  N   D+ ++L+
Sbjct: 111 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 68/113 (60%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           A  G  + ++  +A GAD +  D +G T LH A  Y  ++  ++LL+ GA+V+A D + +
Sbjct: 22  ARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           T LH AA +G  E V +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 82  TPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 56/86 (65%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
           GRT LH A   G ++  ++LLEAGA+V+A DKN  T LH AA  G  E V LLLE GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 322 TLQNMDGKTPIDVAKLNSQHDVLKLL 347
             ++ +G+TP+ +A  N   +V+KLL
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 67/117 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G  E ++  L  GAD +  D+ G T LH A  +G ++  ++LL+ GA+V+A D
Sbjct: 51  LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            N  T LH AA  G  E V +LL+ GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 111 DNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A +G  E ++  L  GAD +  D++G T LH A   G ++  ++LL+ GA+V+A D
Sbjct: 51  LHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
               T LH AA  G  E V +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 111 AYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 69/114 (60%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           A  G  + ++  +A GAD + ED+ G T LH A   G ++  ++LL+ GA+V+A+D    
Sbjct: 22  ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
           T L  AA +G  E V +LL+NGA V   +M+G TP+ +A +    +++++L K+
Sbjct: 82  TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A       ++  L  GAD   +D  G   LH AC YG  + A++L++ GA V+  D
Sbjct: 46  LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
             K T LH AA  G+ E   LLL++GA  T +N DG TP+D+ K +   D+  LL  DA 
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Query: 353 L 353
           L
Sbjct: 165 L 165

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A       ++  L  GAD   +D  G   LH AC YG  + A++L++ GA V+  D
Sbjct: 48  LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 107
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
             K T LH AA  G+ E   LLL++GA  T +N DG TP+D+ K +   D+  LL  DA 
Sbjct: 108 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 166
Query: 353 L 353
           L
Sbjct: 167 L 167

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A       ++  L  GAD   +D  G   LH AC YG  + A++L++ GA V+  D
Sbjct: 50  LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 109
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
             K T LH AA  G+ E   LLL++GA  T +N DG TP+D+ K +   D+  LL  DA 
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 168
Query: 353 L 353
           L
Sbjct: 169 L 169

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A+ G  E ++  L  GAD +  D  G T LH A   G ++  ++LL+ GA+V+A+D
Sbjct: 51  LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
              +T LH AA  G  E V +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A+ G  E ++  L  GAD +  D  G T LH A   G ++  ++LL+ GA+V+A+D
Sbjct: 51  LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
              +T LH AA  G  E V +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 67/113 (59%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           A  G  + ++  +A GAD + ED  G+T LH A   G ++  ++LL+ GA+V+A DK  +
Sbjct: 22  ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           T LH AA YG  E V +LL+NGA V   +  G TP+ +A      +++++L K
Sbjct: 82  TPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 64/113 (56%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           A  G  + ++  +A GAD +  D  GRT LH A   G ++  ++LL  GA+V+A+D N  
Sbjct: 10  ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           T LH AA  G  E V +LL+ GA V  ++  G TP+ +A      +++++L K
Sbjct: 70  TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 65/113 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           A  G  + ++  +A GAD + ED  G T LH A     ++  ++LL+ GA+V+A+D    
Sbjct: 22  ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           T LH  A YG  E V +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 82  TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 58/101 (57%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +A GAD +  D  G T LH A   G ++  ++LL+ GA+V+A D    T LH AA  G  
Sbjct: 34  MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHL 93
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           E V +LLE GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 94  EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 65/116 (56%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A VG  E ++  L  GAD +  D  G T LH A   G ++  ++LL+ GA+V+A D
Sbjct: 51  LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
              +T LH AA  G  E V +LL+ GA V  Q+  GKT  D++  N   D+ ++L+
Sbjct: 111 TIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
            S +H  A  G  +     + AGA+ D    + RT L  A     ++  + L++AGA VD
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             D   +T LH AA  G  E V  LL NG   V  Q+  G TP+  A      D++KLL
Sbjct: 72  PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 58/101 (57%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +A GAD +  D  G T LH A   G ++  ++LL+ GA+V+A D    T LH AA  G  
Sbjct: 34  MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHL 93
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           E V +LLE GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 94  EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 52/88 (59%)
Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
           +G T LH A   G  +  + LL  GA+V+A  K+ NT LH AA  G  E V LLL  GA 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
           V  ++ DG TP  +AK N  H+++KLL+
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLD 95

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 58/101 (57%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +A GAD +  D  G T LH A   G ++  ++LL+ GA+V+A D    T LH AA  G  
Sbjct: 34  MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHL 93
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           E V +LLE GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 94  EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 64/117 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H   + G  E ++  L   AD +  D  G T LH A   G ++  ++LL+ GA+V+A+D
Sbjct: 51  LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
               T LH AA  G  E V +LL+ GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 111 YQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           GAD    V N   + +H  A  G  E ++  L  GAD D  D  G T LH A   G ++ 
Sbjct: 37  GAD-VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEI 95
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
            ++LL+ GA+V+A D   +T LH AA  G  E V +LL+ GA V  Q+  GKT  D++  
Sbjct: 96  VEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Query: 338 NSQHDVLK 345
           N   D+ K
Sbjct: 156 NGNEDLAK 163

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVA 312
           D D  D  GRTAL F  G G  KC ++L EAGA++D  D +   TALH AAGY R E V 
Sbjct: 68  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 313 LLLENGAAVTLQNMDGKTPIDVAK 336
            L+E GA + +++  G T +++A+
Sbjct: 128 ALVELGADIEVEDERGLTALELAR 151

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 65/117 (55%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G  E ++  L  GAD +  D+ G T LH A   G ++  ++LL+ GA+V+A D
Sbjct: 51  LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
               T LH AA  G  E V +LL+ GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 111 YEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GAD   +D  G   LH AC YG  +  ++LL+ GA V+A+D  + T LH AA   R 
Sbjct: 78  LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVA 335
           E  +LLL +GA  TL N  GK+ +D+A
Sbjct: 138 EVCSLLLSHGADPTLVNCHGKSAVDMA 164

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 65/113 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           A  G  + ++  +A GAD +  D +G T LH A   G ++  ++LL+ GA+V+A D    
Sbjct: 22  ARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           T LH AA  G  E V +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 82  TPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 66/113 (58%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           A  G  + ++  +A GAD + +D  G T L+ A  +G ++  ++LL+ GA+V+A+D    
Sbjct: 22  ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           T LH AA  G  E   +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVA 312
           D D  D  GRTAL F  G G  KC ++L EAGA++D  D +   TALH AAGY R E V 
Sbjct: 69  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 313 LLLENGAAVTLQNMDGKTPIDVAK 336
            L+E GA + +++  G T +++A+
Sbjct: 129 ALVELGADIEVEDERGLTALELAR 152

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 67/116 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A+ G  E ++  L  GAD +  DS G T LH A   G ++  ++LL+ GA+V+A D
Sbjct: 43  LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
           +   T LH AA  G+ E V +LL++GA V  Q+  G T  D++    Q D+ ++L+
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 60/116 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           +H  A  G     +  L AG  +D      RT LH A   G     ++LL+ GA+V+A D
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
             K TALH+A  +  +E V LL++ GA V  Q+   KT  D++  N   D+ ++L+
Sbjct: 98  MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 63/121 (52%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
           E+++H  +  GD   ++  L  G+D + +D  G T LH AC +G +K  ++LL+  A V+
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
                 ++ LH AA  G  + V LLL  GA+    N+ G  P+D     S   +L L EK
Sbjct: 71  TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Query: 350 D 350
           +
Sbjct: 131 N 131

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 56/100 (56%)
Query: 250 AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKE 309
           A GAD +  D  G T LH A   G ++  ++LL+ GA+V+A      T LH AA     E
Sbjct: 35  ANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLE 94
Query: 310 CVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            V +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 95  IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 235 HTAS-VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H AS +G    +KN L  GA  +  + +  T LH A   G  + A+ LL+  A V+A  K
Sbjct: 19  HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 78
Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD-VLKLLEKDA 351
           +  T LH AA  G    V LLLEN A   L    G TP+ +A      + VL LLEK+A
Sbjct: 79  DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 232 IVHHTASVGDAEGLKNALAAGADKD---EEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
           +V + A  G  E LK ++ A  DK      D + RTALH+AC  G  +  + LL+ G  V
Sbjct: 9   MVCNLAYSGKLEELKESILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +  D    + LH AA  GR E V  LL  GA V   N +G TP+  A   ++H++  +L
Sbjct: 67  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 232 IVHHTASVGDAEGLKNALAAGADKD---EEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
           +V + A  G  E LK ++ A  DK      D + RTALH+AC  G  +  + LL+ G  V
Sbjct: 10  MVCNLAYSGKLEELKESILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 67
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +  D    + LH AA  GR E V  LL  GA V   N +G TP+  A   ++H++  +L
Sbjct: 68  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 126

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
           D + RTALH+AC  G  +  + LL+ G  V+  D    + LH AA  GR E V  LL  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           A V   N +G TP+  A   ++H++  +L
Sbjct: 97  AHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 56/105 (53%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
           S +H  AS G  E +K  L  GA  +  +  G T LH+A      + A +LLE GAN DA
Sbjct: 75  SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
            D    TA+H AA  G  + V +LL   A+  +Q+ +G TP+ +A
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 216 NAGADEAEEVGNEDESI-VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274
           NAGA       N D+++ +H     G  + +K  L + A  +++D  G T L +AC  G 
Sbjct: 111 NAGAR------NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH 164
Query: 275 VKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
            +   +LL+ GA+++A +   NTALH A        V LLL +GA+V + N   +T +D 
Sbjct: 165 HELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDC 224
Query: 335 AKLNSQHDVLKLLE 348
           A+ NS+  +++LL+
Sbjct: 225 AEQNSK--IMELLQ 236

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE-VK 276
           GAD +  +  E  S +H  A  G    +   +A G D D  D  G T L +A      V 
Sbjct: 99  GADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 277 CAQILLEAGANVDALDK-NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
             ++LL    +V+  DK +KNTALH+A   G    ++LLLE GA V  QN+ G++ +D+A
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Query: 336 K 336
           K
Sbjct: 218 K 218

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 244 GLKNA---LAAGADK-DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
           G++NA   L    DK +++D EG TAL +A     +  A+ LL  G+NV+  D +  T L
Sbjct: 46  GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105
Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA-KLNSQHDVLKLLE 348
            ++  +G  E    LLE+GA V  +N++G+TP+ VA K      V KLLE
Sbjct: 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 53/107 (49%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
           +D ++     S GD E +   L  GAD +  + +G TALH AC    V   + L+E GAN
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
           ++  D      LH AA  G  +    L+  GA V   N +G TP+D+
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 233 VHHTASVGDAEGLKNALAAGAD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
           +H  A+ G+ + LK  L  G +  ++ D  G T L +A  +GE++  + LLE GA+   L
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
            K + +AL  A+  G  + V LLLE    + + + +G TP+
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 233 VHHTASVGDAEGLKNALAAGAD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
           +H  A+ G+ + LK  L  G +  ++ D  G T L +A  +GE++  + LLE GA+   L
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
            K + +AL  A+  G  + V LLLE    + + + +G TP+
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
           +++ + A AD +  D+ G+TALH+A      +   ILL   AN DA D    T L  AA 
Sbjct: 134 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAR 193
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            G  E    LL+N A   + +   + P DVA     HD+++LL++
Sbjct: 194 EGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 199 GEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE 258
           G A+ + +  D T +  N G D          S +H     G +  ++  +  GA  +  
Sbjct: 16  GNAVAVRLWLDNTENDLNQGDDHGF-------SPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
           +    T LH A  +G     Q LL+  A+++A++++ N  LHYA  +G+ +    L+ NG
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 319 AAVTLQNMDGKTPIDVAK 336
           A V++ N  G+ P+D AK
Sbjct: 129 ALVSICNKYGEMPVDKAK 146

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVAL 313
           D ++ D  G + LH+AC  G     ++L+  GA ++ +++  +T LH AA +G ++ V  
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 314 LLENGAAVTLQNMDGKTPIDVAKLNSQHDV 343
           LL+  A +   N  G  P+  A    Q  V
Sbjct: 91  LLQYKADINAVNEHGNVPLHYACFWGQDQV 120

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 243 EGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL-EAGANVDALDKNKNTALHY 301
           +G K      A KD E  +GRTALH+A         + L+ E G+N D  D++  T +  
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXL 319
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           AA  GR E V  L++ GA+V   +    T   +A+ N+ H+++ + ++
Sbjct: 320 AAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
           GD + +K+ +A G D +     GR  LH+A   G+++  + LL  GA+++A DK+  T L
Sbjct: 13  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPID 333
             A   G   CV LLL  GA  T++  DG T ++
Sbjct: 73  LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 199 GEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE 258
           G A+ + +  D T +  N G D          S +H     G +  ++  +  GA  +  
Sbjct: 11  GNAVAVRLWLDNTENDLNQGDDHGF-------SPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
           +    T LH A  +G     Q LL+  A+++A++++ N  LHYA  +G+ +    L+ NG
Sbjct: 64  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 319 AAVTLQNMDGKTPIDVAK 336
           A V++ N  G+ P+D AK
Sbjct: 124 ALVSICNKYGEMPVDKAK 141

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVAL 313
           D ++ D  G + LH+AC  G     ++L+  GA ++ +++  +T LH AA +G ++ V  
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 314 LLENGAAVTLQNMDGKTPIDVAKLNSQHDV 343
           LL+  A +   N  G  P+  A    Q  V
Sbjct: 86  LLQYKADINAVNEHGNVPLHYACFWGQDQV 115

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
           GD + +K+ +A G D +     GR  LH+A   G+++  + LL  GA+++A DK+  T L
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPID 333
             A   G   CV LLL  GA  T++  DG T  +
Sbjct: 78  LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
           D S +H  A  G    L+N ++ G   +   ++  + LH AC  G + C +ILL+ GA V
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
           + +  + +T L  A   G  +CV LLL++GA+V
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
           D S +H  A  G    L+N ++ G   +   ++  + LH AC  G + C +ILL+ GA V
Sbjct: 3   DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
           + +  + +T L  A   G  +CV LLL++GA+V  ++ D  +PI
Sbjct: 63  NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPI 105

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 279 QILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN 338
           +IL+  GA+V A DKN +T LH AA  G  E V LLLE GA V  Q+  GKT  D++  N
Sbjct: 41  RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Query: 339 SQHDVLKLLE 348
              D+ ++L+
Sbjct: 101 GNEDLAEILQ 110

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 279 QILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN 338
           +IL+  GA+V A DKN +T LH AA  G  E V LLLE GA V  Q+  GKT  D++  N
Sbjct: 23  RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDN 82
Query: 339 SQHDVLKLLE 348
              D+ ++L+
Sbjct: 83  GNEDLAEILQ 92

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           G  E +   N  ++ +H          ++  + AGA     D  G+TA H AC +    C
Sbjct: 35  GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTC 94
Query: 278 AQILLEAGA----NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPI 332
            + LL++ A    +++A + +  TALH A     +E V LLLE GA +   ++  G++P+
Sbjct: 95  LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 333 DVAKLNSQHDVLKLL 347
             A  N+   +++LL
Sbjct: 155 IHAVENNSLSMVQLL 169

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
           +G+ E  +  L  GA+ D +D  G   +H A   G++   Q LLE  A+V+  D   N  
Sbjct: 47  LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
           LH AA  G    V  L+++ A+ V  +N  G T  D+A+L  +++V+ L++ +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
           +G+ E  +  L  GA+ D +D  G   +H A   G +   Q LLE  A+V+  D   N  
Sbjct: 47  LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
           LH AA  G    V  L+++ A+ V  +N  G T  D+A+L  +++V+ L++ +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 279 QILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN 338
           +IL+  GA+V+A DK+  T LH AA  G  E V +LL+ GA V  Q+  GKT  D++  N
Sbjct: 19  RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 78
Query: 339 SQHDVLKLLEKDA 351
              D+ ++L+K A
Sbjct: 79  GNEDLAEILQKAA 91

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 233 VHHTASVGDAEGLKNAL--AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
            H   SVG+ E +K+        D ++  ++G T LH A G    + +Q L+E GA+V  
Sbjct: 76  FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPI 332
            DK     LH AA  G  + + LL   G +AV  Q+  G TP+
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 234 HHTASVGDAEGLKNAL--AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
           H   SVG+ E +K+        D ++  ++G T LH A G    + +Q L+E GA+V   
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 292 DKNKNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPI 332
           DK     LH AA  G  + + LL   G +AV  Q+  G TP+
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
           +G+ E  +  L  GA+ D +D  G   +H A   G +   Q LLE  A+V+  D   N  
Sbjct: 47  LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
           LH AA  G    V  L+++ A+ V  +N  G T  D+A+L  +++V+ L++ +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
           +G+ E  +  L  GA+ D +D  G   +H A   G +   Q LLE  A+V+  D   N  
Sbjct: 47  LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
           LH AA  G    V  L+++ A+ V  +N  G T  D+A+L  +++V+ L++ +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 234 HHTASVGDAEGLKNAL--AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
           H   SVG+ E +K+        D ++  ++G T LH A G    + +Q L+E GA+V   
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 292 DKNKNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPI 332
           DK     LH AA  G  + + LL   G +AV  Q+  G TP+
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 228 EDESIVHHT-----------ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
           E E++++HT           A+ G    ++  L  GAD         +AL  AC  G   
Sbjct: 40  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
             ++LL+ G +V+  D N  T L YA      +CV +LLE+GA  T++   G   +D+A 
Sbjct: 100 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 159
Query: 337 LNSQHDVLKLLE 348
                 V +++E
Sbjct: 160 ALGYRSVQQVIE 171

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 280 ILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 339
            +++ G ++DA   + NTALHYAA Y + +C+ LLL+  A V   N  G+T +D+A+   
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270
Query: 340 QHDVLKLLEK 349
             +  +LLE+
Sbjct: 271 HKECEELLEQ 280

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
           +G+ E  +  L  GA+ D +D  G   +H A   G +   Q LLE  A+V+  D   N  
Sbjct: 47  LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
           LH AA  G    V  L+++ A+ V  +N  G T  D+A+L  +++V+ L++ +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 228 EDESIVHHT-----------ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
           E E++++HT           A+ G    ++  L  GAD         +AL  AC  G   
Sbjct: 24  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
             ++LL+ G +V+  D N  T L YA      +CV +LLE+GA  T++   G   +D+A 
Sbjct: 84  IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143
Query: 337 LNSQHDVLKLLE 348
                 V +++E
Sbjct: 144 ALGYRSVQQVIE 155

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 280 ILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 339
            +++ G ++DA   + NTALHYAA Y + +C+ LLL+  A V   N  G+T +D+A+   
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 251
Query: 340 QHDVLKLLEK 349
             +  +LLE+
Sbjct: 252 HKECEELLEQ 261

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 228 EDESIVHHT-----------ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
           E E++++HT           A+ G    ++  L  GAD         +AL  AC  G   
Sbjct: 22  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
             ++LL+ G +V+  D N  T L YA      +CV +LLE+GA  T++   G   +D+A 
Sbjct: 82  IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 141
Query: 337 LNSQHDVLKLLE 348
                 V +++E
Sbjct: 142 ALGYRSVQQVIE 153

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           N  A++AE + N     +H  A  G+   L+  L      +  D  G TAL++AC  G  
Sbjct: 64  NYVAEQAESIDNP----LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119
Query: 276 KCAQILLEAGANVDALDKNK--NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPID 333
              + L     N++   +NK  +TALH AA  G  + V LLL  GA   L+N++ K   D
Sbjct: 120 DIVEXLFTQ-PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178
Query: 334 VA 335
            A
Sbjct: 179 XA 180

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 241 DAEGLKNALAAGADKDEE------DSEGRTALHFACG---YGEVKCAQILLEAGANVDAL 291
           D  GL  A A G D  E+           TALH A        +     L++   N+D  
Sbjct: 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK-LNSQH 341
               +TALHY       EC+ LLL   A++ + N  G+TP+D+AK L  +H
Sbjct: 202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 252

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
           L++ + + AD +  D  G++ALH+A     V  A +LL+ GAN D  +  + T L  AA 
Sbjct: 141 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 200
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            G  E   +LL++ A   + +   + P D+A+    HD+++LL++
Sbjct: 201 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 245

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
           L++ + + AD +  D  G++ALH+A     V  A +LL+ GAN D  +  + T L  AA 
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            G  E   +LL++ A   + +   + P D+A+    HD+++LL++
Sbjct: 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
           L++ + + AD +  D  G++ALH+A     V  A +LL+ GAN D  +  + T L  AA 
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
            G  E   +LL++ A   + +   + P D+A+    HD+++LL+
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
           L++ + + AD +  D  G++ALH+A     V  A +LL+ GAN D  +  + T L  AA 
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
            G  E   +LL++ A   + +   + P D+A+    HD+++LL+
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
           L++ + + AD +  D  G++ALH+A     V  A +LL+ GAN D  +  + T L  AA 
Sbjct: 31  LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 90
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            G  E   +LL++ A   + +   + P D+A+    HD+++LL++
Sbjct: 91  EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 135

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
           L++ + + AD +  D  G++ALH+A     V  A +LL+ GAN D  +  + T L  AA 
Sbjct: 105 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 164
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            G  E   +LL++ A   + +   + P D+A+    HD+++LL++
Sbjct: 165 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
           + EG TALH A   G  +  + L++ G NV+A D +  T LH AA     +    L+E+G
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 319 AAV 321
           AAV
Sbjct: 127 AAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
           + EG TALH A   G  +  + L++ G NV+A D +  T LH AA     +    L+E+G
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 319 AAV 321
           AAV
Sbjct: 127 AAV 129

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN------VDALDKNKNTALHYA 302
           L AG D +  D  G T LH AC  G +    +L ++         + A + N +T LH A
Sbjct: 65  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 303 AGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEK 349
           + +G    V LL+  GA V  Q   +G+T + +A      D++ LL K
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN------VDALDKNKNTALHYA 302
           L AG D +  D  G T LH AC  G +    +L ++         + A + N +T LH A
Sbjct: 62  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 121
Query: 303 AGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEK 349
           + +G    V LL+  GA V  Q   +G+T + +A      D++ LL K
Sbjct: 122 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GA  + +D+ G + +H A   G +   ++L+E GA+V+ALD   +  +H A   G  
Sbjct: 63  LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHS 122
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
             V+ L    + +  ++  G TP+++A+     +++ +L+
Sbjct: 123 SVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQ 161

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GA  + +D+ G + +H A   G +   ++L+E GA+V+ALD   +  +H A   G  
Sbjct: 61  LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHS 120
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
             V+ L    + +  ++  G TP+++A+     +++ +L+
Sbjct: 121 SVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQ 159

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 245 LKNALAAGADKDEEDS--EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA 302
           + +ALA GAD +  +   +  T L  A     +   + LL+ GANV+  D      LH+A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
              G      L L+ GA +  ++ +G+ P+ +A   +  D++ LL 
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 245 LKNALAAGADKDEEDS--EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA 302
           + +ALA GAD +  +   +  T L  A     +   + LL+ GANV+  D      LH+A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
              G      L L+ GA +  ++ +G+ P+ +A   +  D++ LL 
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 227 NEDESIVHHTASVGDAEG-------LKNALAAGADKDEEDS--EGRTALHFACGYGEVKC 277
           +ED   +H  A +  A G       + +ALA GAD +  +   +  T L  A     +  
Sbjct: 191 SEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLA 250
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
            + LL+ GANV+  D      LH+A   G      L L+ GA +  ++ +G+ P+ +A  
Sbjct: 251 CEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Query: 338 NSQHDVLKLLE 348
            +  D++ LL 
Sbjct: 311 TANADIVTLLR 321

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA- 320
           G+TAL  A  +G V   + LL   A+V+  D + +TAL  A  +G KE   LLL   +  
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           ++L + DG T + VA    Q ++  +L
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASML 269

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           A  G+ E ++ A+    D  + + EG TALH A           L+ AGANV++ D +  
Sbjct: 29  ALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW 88
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPID 333
           T LH AA          L+++GAA+    + DG T  +
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-35
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-33
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-32
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-26
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-31
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-28
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-30
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-30
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-30
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-30
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-29
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-29
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-28
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-28
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-25
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-24
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-24
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-26
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-23
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-22
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-04
2rfa_A	232	Transient receptor potential cation channel subfa	4e-22
2rfa_A	232	Transient receptor potential cation channel subfa	6e-22
2rfa_A	232	Transient receptor potential cation channel subfa	7e-22
2rfa_A	232	Transient receptor potential cation channel subfa	4e-20
2rfa_A	232	Transient receptor potential cation channel subfa	2e-17
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-21
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-20
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-05
2pnn_A	273	Transient receptor potential cation channel subfa	4e-19
2pnn_A	273	Transient receptor potential cation channel subfa	4e-15
2pnn_A	273	Transient receptor potential cation channel subfa	3e-14
2pnn_A	273	Transient receptor potential cation channel subfa	7e-11
2pnn_A	273	Transient receptor potential cation channel subfa	1e-09
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
2etb_A	256	Transient receptor potential cation channel subfam	9e-19
2etb_A	256	Transient receptor potential cation channel subfam	2e-16
2etb_A	256	Transient receptor potential cation channel subfam	4e-15
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  124 bits (314), Expect = 3e-35
 Identities = 39/118 (33%), Positives = 59/118 (50%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H  +  GD   ++  L  G+D + +D  G T LH AC +G +K  ++LL+  A V+    
Sbjct: 15  HIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY 74

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
             ++ LH AA  G  + V LLL  GA+    N+ G  P+D     S   +L L EK+ 
Sbjct: 75  QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  104 bits (262), Expect = 1e-27
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
           G D    +  G T LH A   G++   + LL+ G++ +  D    T LH A  +G  + V
Sbjct: 1   GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 312 ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            LLL++ A V        +P+  A  N   D++KLL
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 87.1 bits (217), Expect = 4e-21
 Identities = 16/71 (22%), Positives = 29/71 (40%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L   A  +    +  + LH A   G V   ++LL  GA+ +A++      + Y      K
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122

Query: 309 ECVALLLENGA 319
             + L  +N +
Sbjct: 123 SLLLLPEKNES 133

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  124 bits (314), Expect = 1e-34
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
              AD    V +E E+     A   D + L   L    D D  D  GRTAL F  G G  
Sbjct: 35  YIAAD----VVSEYETPWWTAARKADEQALS-QLLEDRDVDAVDENGRTALLFVAGLGSD 89

Query: 276 KCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
           KC ++L EAGA++D  D +   TALH AAGY R E V  L+E GA + +++  G T +++
Sbjct: 90  KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 149

Query: 335 AKLNSQHDVLKLL 347
           A+   +       
Sbjct: 150 AREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 91.8 bits (229), Expect = 2e-22
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 249 LAAGADKDEEDSE-GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
             AGAD D  D   G TALH A GY   +  + L+E GA+++  D+   TAL  A    +
Sbjct: 96  AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 155

Query: 308 KECVALLLENGA 319
                  ++ G 
Sbjct: 156 TTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 80.6 bits (200), Expect = 3e-18
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
             EG          G            A+V +  +   T    AA    ++ ++ LLE  
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLLE-D 66

Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             V   + +G+T +           ++LL
Sbjct: 67  RDVDAVDENGRTALLFVAGLGSDKCVRLL 95

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.2 bits (108), Expect = 7e-06
 Identities = 9/67 (13%), Positives = 13/67 (19%), Gaps = 3/67 (4%)

Query: 285 GANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL 344
                                G            A V     + +TP   A   +    L
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQAL 60

Query: 345 KLLEKDA 351
             L +D 
Sbjct: 61  SQLLEDR 67

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  123 bits (310), Expect = 2e-33
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
              AD    V +E E+     A   D + L   L    D D  D  GRTAL F  G G  
Sbjct: 36  YIAAD----VVSEYETPWWTAARKADEQALS-QLLEDRDVDAVDENGRTALLFVAGLGSD 90

Query: 276 KCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
           KC ++L EAGA++D  D +   TALH AAGY R E V  L+E GA + +++  G T +++
Sbjct: 91  KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 150

Query: 335 AKLNSQHDVLKLL 347
           A+   +       
Sbjct: 151 AREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 99.2 bits (248), Expect = 2e-24
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSE-GRTALHFACGYGEV 275
              D  + V     + +   A +G  + ++    AGAD D  D   G TALH A GY   
Sbjct: 66  EDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           +  + L+E GA+++  D+   TAL  A    +       ++ G  +    ++    +   
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI---GLEKVINVLEG 181

Query: 336 KLNSQHDVLKLLEKD 350
           ++    +V +++EK 
Sbjct: 182 QVFEYAEVDEIVEKR 196

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
             EG          G            A+V +  +   T    AA    ++ ++ LLE  
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLLE-D 67

Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             V   + +G+T +           ++LL
Sbjct: 68  RDVDAVDENGRTALLFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.9 bits (185), Expect = 8e-16
 Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 24/124 (19%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL-- 291
           H  A     E ++  +  GAD + ED  G TAL  A    +       ++ G  +     
Sbjct: 116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 175

Query: 292 --------------------DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP 331
                                       +        +C  +   + A    +  D +  
Sbjct: 176 INVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK--DYEDG 233

Query: 332 IDVA 335
           ++ A
Sbjct: 234 LEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 10/95 (10%)

Query: 222 AEEVGNED--ESIVHHTASVGDAEGLKNALAAGADKDE------EDSEGRTALHFACGYG 273
           A E+       + +     +G  + +        +  E      +  +G+   +      
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD 210

Query: 274 EVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
              C  +     A   A  K+    L YA      
Sbjct: 211 GGDCEWVKGVHVAEDVA--KDYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 9/60 (15%), Positives = 13/60 (21%), Gaps = 3/60 (5%)

Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
                         G            A V     + +TP   A   +    L  L +D 
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLEDR 68

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  118 bits (298), Expect = 5e-33
 Identities = 35/112 (31%), Positives = 55/112 (49%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
                 GD + +K+ +A G D +     GR  LH+A   G+++  + LL  GA+++A DK
Sbjct: 12  MWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 71

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 345
           +  T L  A   G   CV LLL  GA  T++  DG T  +     +   +L+
Sbjct: 72  HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 95.5 bits (239), Expect = 2e-24
 Identities = 22/89 (24%), Positives = 36/89 (40%)

Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
            S       +A   G++   +  +  G +V+   +     LHYAA  G+ E +  LL  G
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           A +   +    TP+  A        +KLL
Sbjct: 64  ADINAPDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 59.7 bits (146), Expect = 2e-11
 Identities = 12/58 (20%), Positives = 21/58 (36%)

Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            L    +    +A   G  + V   +  G  V      G+ P+  A    Q ++L+ L
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  117 bits (295), Expect = 5e-32
 Identities = 31/99 (31%), Positives = 47/99 (47%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GAD         +AL  AC  G     ++LL+ G +V+  D N  T L YA      
Sbjct: 56  LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV 115

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +CV +LLE+GA  T++   G   +D+A       V +++
Sbjct: 116 KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  115 bits (292), Expect = 1e-31
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H  A+ G+   L   +      +  D EG T L +A  +G++   + LL+ GA+   L K
Sbjct: 8   HQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK 67

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKDA 351
            + +AL  A   G  + V +LL+ G  V   + +G TP+  A   +    +K LLE  A
Sbjct: 68  GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 98.6 bits (247), Expect = 4e-25
 Identities = 21/86 (24%), Positives = 39/86 (45%)

Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
              ++H     GE+      +E    ++  D+   T L +AA +G+   V  LL+NGA  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 322 TLQNMDGKTPIDVAKLNSQHDVLKLL 347
            L     ++ + +A      D++K+L
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKML 88

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 96.7 bits (242), Expect = 2e-24
 Identities = 19/79 (24%), Positives = 34/79 (43%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  G D +E D  G T L +A     VKC ++LLE+GA+      +   ++  A   G +
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148

Query: 309 ECVALLLENGAAVTLQNMD 327
               ++  +   +     +
Sbjct: 149 SVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.0 bits (139), Expect = 4e-10
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             + ++H  A  G    +A  +E    +   + +G TP+  A  + Q  V++ L
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 55

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  117 bits (295), Expect = 6e-32
 Identities = 29/99 (29%), Positives = 52/99 (52%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +  GA  +  +    T LH A  +G     Q LL+  A+++A++++ N  LHYA  +G+ 
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +    L+ NGA V++ N  G+ P+D AK   +  + +  
Sbjct: 119 QVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  108 bits (272), Expect = 2e-28
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 234 HHTASVGDAEGLKNALAAGA-DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
                 G+A  ++  L     D ++ D  G + LH+AC  G     ++L+  GA ++ ++
Sbjct: 10  FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +  +T LH AA +G ++ V  LL+  A +   N  G  P+  A    Q  V + L
Sbjct: 70  RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 96.0 bits (240), Expect = 6e-24
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGAN-VDALDKNKNTALHYAAGYGRKECVALLLEN 317
             E    +   C  G     ++ L+   N ++  D +  + LH+A   GR   V +L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 318 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           GA + + N    TP+ +A  +   D+++ L
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKL 91

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 94.8 bits (237), Expect = 1e-23
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             GA     +   D++ +H  AS G  + ++  L   AD +  +  G   LH+AC +G+ 
Sbjct: 60  MRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
           + A+ L+  GA V   +K     +  A    R+       + G  +
Sbjct: 119 QVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 6/59 (10%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
           +A GA     +  G   +  A         +   + G N++                G 
Sbjct: 125 VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWKGT 177

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  118 bits (297), Expect = 9e-32
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL-EAGANVDALD 292
           H  A  G+   L+  L      +  D  G TAL++AC  G     ++L  +    ++  +
Sbjct: 78  HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN 137

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           K  +TALH AA  G  + V LLL  GA   L+N++ K   D+A   +   +LK  
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  102 bits (256), Expect = 7e-26
 Identities = 22/92 (23%), Positives = 33/92 (35%)

Query: 251 AGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKEC 310
              + ++++  G TALH A   G     Q+LL  GA  D  +  K  A   A        
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASL 188

Query: 311 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHD 342
           +       A  TL N +     + + L   H 
Sbjct: 189 LKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.5 bits (246), Expect = 2e-24
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 248 ALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
            L       E+       LH A   G +   +  L+    V+ LDK  +TAL++A   G 
Sbjct: 59  GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGH 118

Query: 308 KECVALLL-ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           K+ V +L  +    +  QN  G T +  A      D+++LL
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 90.0 bits (224), Expect = 3e-21
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 5/115 (4%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           V       +            D         T        G        L     V    
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT-----GLIPSNYVAEQA 70

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           ++ +  LH AA  G    +   L+N   V   +  G T +  A      D++++L
Sbjct: 71  ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 9/58 (15%), Positives = 14/58 (24%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYG 306
           LA GA  D  + E + A   A         +      A     +         +    
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  116 bits (293), Expect = 1e-31
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 1/137 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             G +   +      + +   ++ G+ E ++  L  GAD      E  +AL  A   G  
Sbjct: 23  RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
               +LLE   +++  D N  T L YA      +CV  LL  GA +T +   G TP+D+A
Sbjct: 83  DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142

Query: 336 KLNSQHDVLK-LLEKDA 351
                  V + +     
Sbjct: 143 VALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  106 bits (268), Expect = 5e-28
 Identities = 19/83 (22%), Positives = 33/83 (39%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L    D +  D  G T L +A     VKC + LL  GA++     +  T +  A   G +
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148

Query: 309 ECVALLLENGAAVTLQNMDGKTP 331
           +   ++  +   +   N+    P
Sbjct: 149 KVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 94.0 bits (235), Expect = 2e-23
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 262 GRTALHFACGYGEVKCAQILLEAGAN-VDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
              ++H     GE+   +  L  G N V+  D+   T L +A+ +G  E V  LLE GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLK-LLEKDA 351
             +   + ++ + +A      D++  LLE+D 
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDV 93

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  119 bits (301), Expect = 2e-31
 Identities = 40/124 (32%), Positives = 62/124 (50%)

Query: 224 EVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE 283
           +V  +D ++     S GD E +   L  GAD +  + +G TALH AC    V   + L+E
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 284 AGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 343
            GAN++  D      LH AA  G  +    L+  GA V   N +G TP+D+A+  +  ++
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL 154

Query: 344 LKLL 347
           L+  
Sbjct: 155 LQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  111 bits (279), Expect = 2e-28
 Identities = 29/98 (29%), Positives = 49/98 (50%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
             +       G TALH A   G  +  ++L++A  +V+  D +  T LH AA +G++E  
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 312 ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
            +L+EN   +   N  G+T  DVA  +    + +L +K
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 95.6 bits (239), Expect = 9e-23
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 1/114 (0%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
                +G    L+  +        +  +G      AC  G+ +    LLE GA+++  + 
Sbjct: 13  QLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYANV 71

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +  TALH A      + V  L+ENGA +   + +G  P+  A      D+ + L
Sbjct: 72  DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 92.6 bits (231), Expect = 1e-21
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +  GA+ ++ D+EG   LH A   G +  A+ L+  GA+V A++   +T L  A     +
Sbjct: 93  VENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           E +   +           D +      +     D  + L
Sbjct: 153 ELLQNEVNRQGV------DIEAARKEEERIMLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 87.9 bits (219), Expect = 5e-20
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 27/126 (21%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGE---VKC------------------------AQIL 281
           ++ GA     +SEG T L  A        ++                          Q L
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL 185

Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 341
                N     K+  TALH AA  G  E + LL++    V +++ DG TP+  A    + 
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE 245

Query: 342 DVLKLL 347
           +  ++L
Sbjct: 246 EACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 82.5 bits (205), Expect = 3e-18
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 1/92 (1%)

Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
              D++ +         G     +  +           +       A   G  E V  LL
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDD-GAVFLAACSSGDTEEVLRLL 60

Query: 316 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           E GA +   N+DG T +  A ++   D++K L
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFL 92

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 80.2 bits (199), Expect = 2e-17
 Identities = 18/71 (25%), Positives = 33/71 (46%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           + A  D + +D +G T LH A  +G+ +  +IL+E   +++A++K   TA   A      
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278

Query: 309 ECVALLLENGA 319
               L  +   
Sbjct: 279 YLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 10/64 (15%), Positives = 21/64 (32%)

Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +   D  +          G +  +   +       ++  DG   +         +VL+LL
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 348 EKDA 351
           E+ A
Sbjct: 61  ERGA 64

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 6/48 (12%), Positives = 15/48 (31%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
           +    D +  +  G+TA   A         ++  +         + K+
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKKS 299

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  117 bits (295), Expect = 4e-31
 Identities = 35/130 (26%), Positives = 65/130 (50%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
            A + +   ++  + +   A +     L++ + + AD +  D  G++ALH+A     V  
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 172

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
           A +LL+ GAN D  +  + T L  AA  G  E   +LL++ A   + +   + P D+A+ 
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232

Query: 338 NSQHDVLKLL 347
              HD+++LL
Sbjct: 233 RMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 98.7 bits (247), Expect = 3e-24
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 249 LAAGAD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
           +  GA   ++ D  G TALH A  Y     A+ LLEA A+ +  D    T LH A     
Sbjct: 43  IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102

Query: 308 KECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +    +L+ N A  +  +  DG TP+ +A   +   +L+ L
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 96.4 bits (241), Expect = 2e-23
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           N+ AD    V +  +S +H  A+V + +     L  GA+KD +++   T L  A   G  
Sbjct: 145 NSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 203

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQN 325
           + A++LL+  AN D  D         A      + V LL          +
Sbjct: 204 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 254 DKDEEDSEGRTALHFACGYGEVKC-------------AQILLEAGANV-DALDKNKNTAL 299
           D +    +G T L  A   G                     +  GA++ +  D+   TAL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           H AA Y R +    LLE  A   +Q+  G+TP+  A       V ++L
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  116 bits (293), Expect = 6e-31
 Identities = 39/130 (30%), Positives = 65/130 (50%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           G  +     +   + +         + +K  L+ G+D +  D+E    LH+A   G V  
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
           A+ILL A  ++ A++ + ++ LH AA   R +CV L L   + VTL+N +G+TP+  A L
Sbjct: 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

Query: 338 NSQHDVLKLL 347
           NSQ      +
Sbjct: 220 NSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  106 bits (268), Expect = 2e-27
 Identities = 40/115 (34%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H  A  G  +     + AGA+ D    + RT L  A     ++  + L++AGA VD  D 
Sbjct: 16  HAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA 75

Query: 294 NKNTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             +T LH AA  G  E V  LL NG   V  Q+  G TP+  A      D++KLL
Sbjct: 76  EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  106 bits (267), Expect = 4e-27
 Identities = 28/95 (29%), Positives = 48/95 (50%)

Query: 253 ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVA 312
            +   E    R+ LH A   G V    +L++AGAN+D   +++ T L  AA     E V 
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 313 LLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            L++ GA V  ++ +G T + +A     ++V++ L
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 90.2 bits (225), Expect = 3e-21
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           G+D      NE+   +H  A  G  +  +  LAA  D    +  G + LH A       C
Sbjct: 134 GSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDC 192

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
             + L   ++V   +K   T L  A+   +      + +   
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.3 bits (119), Expect = 4e-07
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
           L+  +D   ++ EG T L  A    +V  A  + +A  +
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  115 bits (291), Expect = 8e-31
 Identities = 35/130 (26%), Positives = 65/130 (50%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
            A + +   ++  + +   A +     L++ + + AD +  D  G++ALH+A     V  
Sbjct: 81  RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 140

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
           A +LL+ GAN D  +  + T L  AA  G  E   +LL++ A   + +   + P D+A+ 
Sbjct: 141 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 200

Query: 338 NSQHDVLKLL 347
              HD+++LL
Sbjct: 201 RMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  100 bits (251), Expect = 5e-25
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 249 LAAGAD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
           +  GA   ++ D  G TALH A  Y     A+ LLEA A+ +  D    T LH A     
Sbjct: 11  IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 70

Query: 308 KECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +    +L+ N A  +  +  DG TP+ +A   +   +L+ L
Sbjct: 71  QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 95.9 bits (240), Expect = 2e-23
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           N+ AD    V +  +S +H  A+V + +     L  GA+KD +++   T L  A   G  
Sbjct: 113 NSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 171

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
           + A++LL+  AN D  D         A      + V LL E   
Sbjct: 172 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 72.1 bits (178), Expect = 7e-15
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 278 AQILLEAGANV-DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
               +  GA++ +  D+   TALH AA Y R +    LLE  A   +Q+  G+TP+  A 
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66

Query: 337 LNSQHDVLKLL 347
                 V ++L
Sbjct: 67  SADAQGVFQIL 77

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 7/52 (13%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALH 300
           L   A++D  D   R     A         ++L E           ++  LH
Sbjct: 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL-------VRSPQLH 222

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  118 bits (299), Expect = 9e-31
 Identities = 39/99 (39%), Positives = 53/99 (53%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GAD   +D  G   LH AC YG  +  ++LL+ GA V+A+D  + T LH AA   R 
Sbjct: 78  LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           E  +LLL +GA  TL N  GK+ +D+A      + L   
Sbjct: 138 EVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  115 bits (291), Expect = 1e-29
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACGYGE 274
           +  A  A   G   +  +   A  G+ E L   L     +    D    T LH A GY  
Sbjct: 12  DPSAK-AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR 70

Query: 275 VKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
           V+  Q+LL+ GA+V A DK     LH A  YG  E   LLL++GA V   ++   TP+  
Sbjct: 71  VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE 130

Query: 335 AKLNSQHDVLKLL 347
           A   ++ +V  LL
Sbjct: 131 AASKNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  110 bits (278), Expect = 8e-28
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GA+ +E++ +  T LH A         ++L + GA ++ALD    TALH AA  G  
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHL 293

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
           +   LLL  G+  ++ ++ G T   +        V ++L +  
Sbjct: 294 QTCRLLLSYGSDPSIISLQGFTAAQMGNEA----VQQILSEST 332

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  108 bits (272), Expect = 5e-27
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC---AQILLEAGANVDA 290
              A   D   +K  LA      ++     TALH A      K    A++LL  GANV+ 
Sbjct: 183 LQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE 242

Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            +K+  T LH AA     + + +L ++GA +   +  G+T +  A L       +LL
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  102 bits (256), Expect = 9e-25
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG-EVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
               A         +  L  A   G E K   +L     N  A D  K+T LH AAGY R
Sbjct: 11  ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR 70

Query: 308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              V LLL++GA V  ++  G  P+  A     ++V +LL
Sbjct: 71  VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 97.2 bits (243), Expect = 5e-23
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 11/118 (9%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H+  S G  E  +  L  GA  +  D    T LH A     V+   +LL  GA+   ++ 
Sbjct: 96  HNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
           +  +A+  A     +E +                G + +  A+      V K L  + 
Sbjct: 156 HGKSAVDMAPTPELRERLTYEF-----------KGHSLLQAAREADLAKVKKTLALEI 202

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 87.6 bits (218), Expect = 1e-19
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
              GA  +  DS G+TALH A   G ++  ++LL  G++   +     TA          
Sbjct: 267 HKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN----- 321

Query: 309 ECVALLLENGAAVTLQNMDGKT 330
           E V  +L     +   ++D + 
Sbjct: 322 EAVQQILSESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.2 bits (212), Expect = 7e-19
 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 24/123 (19%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQI---------------------LLEAGAN 287
           L+ GAD    +  G++A+  A      +                          L     
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII 203

Query: 288 VDALDKNKNTALHYAAGYG---RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL 344
                ++  TALH A       RK+   LLL  GA V  +N D  TP+ VA   + +DV+
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM 263

Query: 345 KLL 347
           ++L
Sbjct: 264 EVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.5 bits (166), Expect = 8e-13
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYG-RKECVALLLENGAA 320
           G++AL              L +  A      + K   L  AA  G  ++ +ALL      
Sbjct: 4   GKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN 50

Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
               +    TP+ +A   ++  +++LL
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLL 77

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 4e-10
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           GA     + +  ++ +H  A  G  +  +  L+ G+D      +G TA          + 
Sbjct: 270 GAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NEA 323

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYG 306
            Q +L     +     + +  L  A+  G
Sbjct: 324 VQQILSESTPMRT--SDVDYRLLEASKAG 350

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  112 bits (284), Expect = 1e-30
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           GA    +      S +H  A  G     +  L AG  +D      RT LH A   G    
Sbjct: 25  GAPFTTD--WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI 82

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
            ++LL+ GA+V+A D  K TALH+A  +  +E V LL++ GA V  Q+   KT  D++  
Sbjct: 83  VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID 142

Query: 338 NSQHDVLKLLE 348
           N   D+ ++L+
Sbjct: 143 NGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.1 bits (217), Expect = 5e-21
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
           +    L  A   G+    +IL+  GA     D    + LH AA YG      +LL  G +
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              +    +TP+ +A      +++++L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVL 86

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  112 bits (282), Expect = 1e-30
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
                   +G   ++ +   A+ G  E ++  L AGAD +  +  GR  +      G  +
Sbjct: 1   GSPG-IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQ 58

Query: 277 CAQILLEAGANVDALDKNKNT-ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
            A++LL  GA  +  D    T  +H AA  G  + + +L   GA + + +  G+ P+D+A
Sbjct: 59  VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118

Query: 336 KLNSQHDVLKLL 347
           +     D+ + L
Sbjct: 119 EEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.9 bits (232), Expect = 2e-23
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRT-ALHFACGYGEVKCAQILLEAGANVDALDK 293
               +G A+  +  L  GA+ +  D    T  +H A   G +    +L  AGA +D  D 
Sbjct: 50  QVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109

Query: 294 NKNTALHYAAGYGRKECVALLLENGA 319
                +  A   G ++    L     
Sbjct: 110 WGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.8 bits (128), Expect = 7e-09
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
             AGA  D  D+ GR  +  A   G    A+ L  A  +
Sbjct: 98  HRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  116 bits (293), Expect = 2e-30
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +A G + D + S   T L+ AC   +  C + LLE+GA+V+   K +++ LH       +
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE 235

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
           E   LL++ GA    +N +GK P+++    S    L L  + A
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  116 bits (292), Expect = 2e-30
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H  A  G    L+N ++ G   +   ++  + LH AC  G + C +ILL+ GA V+ +  
Sbjct: 64  HEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 123

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           + +T L  A   G  +CV LLL++GA+V  ++ D  +PI  A      + +  L
Sbjct: 124 DWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSL 176

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  104 bits (261), Expect = 6e-26
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GA     +S+  + +H A   G V+C   L+  G N+D    +  T L+ A    ++
Sbjct: 145 LQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR 203

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            CV  LLE+GA V  Q     +P+      +  ++  LL
Sbjct: 204 ACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (257), Expect = 2e-25
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L+     D       + +H A  +G     + L+  G  V+ +  +  + LH A   G  
Sbjct: 48  LSNPLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHL 105

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            CV +LL++GA V     D  TP+  A ++   D + LL
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 78.3 bits (194), Expect = 1e-16
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L +GAD ++      + LH        + A +L++ GA+  A +      +         
Sbjct: 210 LESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES-P 267

Query: 309 ECVALLLENGAAV 321
                L   GA++
Sbjct: 268 LAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.4 bits (145), Expect = 3e-10
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 31/110 (28%)

Query: 269 ACGYGEVKCAQILLEAGANVDALDKNK-----NTALHYAAGYG----------------- 306
              +     +  L+  G+++ ++D  +     +         G                 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 307 ---------RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
                     +  +  L+  G AV +   D  +P+  A L      +K+L
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  118 bits (298), Expect = 5e-30
 Identities = 36/101 (35%), Positives = 51/101 (50%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +  G   D     G T LH A  YG +K  + LL+  A+V+A  K   + LH AA  G  
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           + V LLL+NGA+    + DG TP+ +AK      V  +L+ 
Sbjct: 358 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 398

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  116 bits (292), Expect = 2e-29
 Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
              A        +D++ +H  A +G    +K  L   A+ +   + G T LH A   G V
Sbjct: 68  QNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 126

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           +    LLE  A+   + K   T LH AA YG+     LLLE  A       +G TP+ VA
Sbjct: 127 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 186

Query: 336 KLNSQHDVLKLL 347
             ++  D++KLL
Sbjct: 187 VHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (291), Expect = 3e-29
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             G   A     +  + +H  A  G AE +   L+  A+ +  +  G T LH     G V
Sbjct: 233 QYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 291

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
             A +L++ G  VDA  +   T LH A+ YG  + V  LL++ A V  +   G +P+  A
Sbjct: 292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 351

Query: 336 KLNSQHDVLKLL 347
                 D++ LL
Sbjct: 352 AQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (291), Expect = 4e-29
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
              A+          + +H  A  G  E +   L   A +     +G T LH A  YG+V
Sbjct: 101 ENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           + A++LLE  A+ +A  KN  T LH A  +   + V LLL  G +      +G TP+ +A
Sbjct: 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

Query: 336 KLNSQHDVLKLL 347
              +Q +V + L
Sbjct: 220 AKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (290), Expect = 5e-29
 Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             GA        + E+ +H  A  G  E  K  L   A  + +  + +T LH A   G  
Sbjct: 35  QRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
              ++LLE  AN +      +T LH AA  G  E V  LLE  A+       G TP+ VA
Sbjct: 94  NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153

Query: 336 KLNSQHDVLKLL 347
               +  V +LL
Sbjct: 154 AKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (289), Expect = 6e-29
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           G       G    + +H  + +G    +KN L  GA  +  + +  T LH A   G  + 
Sbjct: 4   GIS-GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
           A+ LL+  A V+A  K+  T LH AA  G    V LLLEN A   L    G TP+ +A  
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 338 NSQHDVLKLL 347
               + +  L
Sbjct: 123 EGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  112 bits (284), Expect = 3e-28
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 1/132 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
              A     +  +  + +H  A  G     +  L   A  +     G T LH A  +  +
Sbjct: 134 EKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
              ++LL  G +  +   N  T LH AA   + E    LL+ G +   +++ G TP+ +A
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252

Query: 336 KLNSQHDVLKLL 347
                 +++ LL
Sbjct: 253 AQEGHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  110 bits (278), Expect = 3e-27
 Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 1/132 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
              A      G    + +H      + + +K  L  G         G T LH A    +V
Sbjct: 167 ERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 225

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           + A+ LL+ G + +A      T LH AA  G  E VALLL   A   L N  G TP+ + 
Sbjct: 226 EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 285

Query: 336 KLNSQHDVLKLL 347
                  V  +L
Sbjct: 286 AQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (275), Expect = 6e-27
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 1/132 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             G            + +H  A     E  ++ L  G   + E  +G T LH A   G  
Sbjct: 200 PRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           +   +LL   AN +  +K+  T LH  A  G      +L+++G  V      G TP+ VA
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318

Query: 336 KLNSQHDVLKLL 347
                  ++K L
Sbjct: 319 SHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.9 bits (245), Expect = 6e-23
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 4/125 (3%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             G    +       + +H  +  G+ + +K  L   AD + +   G + LH A   G  
Sbjct: 299 KHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALL---LENGAAVTLQNMDGKTPI 332
               +LL+ GA+ + +  +  T L  A   G      +L    +  + V + +    +  
Sbjct: 358 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417

Query: 333 DVAKL 337
           +    
Sbjct: 418 ETVDE 422

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  111 bits (280), Expect = 6e-30
 Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GAD   +D  G   LH AC YG  + A++L++ GA V+  D  K T LH AA  G+ 
Sbjct: 62  LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           E   LLL++GA  T +N DG TP+D+ K     D+  LL
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTPLDLVKDGDT-DIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  102 bits (257), Expect = 1e-26
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVK 276
           GA       +E +  +   A  GD E +K        +  + +    T LHFA GY  V 
Sbjct: 1   GAM----GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56

Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
             + LL+ GA+V A DK     LH A  YG  E   LL+++GA V + ++   TP+  A 
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116

Query: 337 LNSQHDVLKLL 347
              ++++ KLL
Sbjct: 117 AKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 84.4 bits (210), Expect = 7e-20
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H+  S G  E  +  +  GA  +  D    T LH A   G+ +  ++LL+ GA+    ++
Sbjct: 80  HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 139

Query: 294 NKNTALHYAAGYGRKECVALLLENGA 319
           + NT L      G  +   LL  + A
Sbjct: 140 DGNTPLDLVK-DGDTDIQDLLRGDAA 164

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  110 bits (277), Expect = 7e-30
 Identities = 41/130 (31%), Positives = 70/130 (53%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           G+      G++    +   A  G  + ++  +A GAD + +D  G T L+ A  +G ++ 
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
            ++LL+ GA+V+A+D    T LH AA  G  E   +LL++GA V  Q+  GKT  D++  
Sbjct: 63  VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122

Query: 338 NSQHDVLKLL 347
           N   D+ ++L
Sbjct: 123 NGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 83.6 bits (208), Expect = 6e-20
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GAD +  D+ G T LH A   G ++ A++LL+ GA+V+A DK   TA   + G G +
Sbjct: 67  LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126

Query: 309 ECVALLLE 316
           +   +L +
Sbjct: 127 DLAEILQK 134

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  110 bits (278), Expect = 1e-29
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN 294
               +G+ E  +  L  GA+ D +D  G   +H A   G +   Q LLE  A+V+  D  
Sbjct: 43  QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE 102

Query: 295 KNTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            N  LH AA  G    V  L+++ A+ V  +N  G T  D+A+L  +++V+ L+
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  104 bits (263), Expect = 2e-27
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
              A+ GD E L + L    + + ++  GRTAL      G  + A+ LL  GAN D  D+
Sbjct: 10  ASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR 68

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
                +H AA  G  + +  LLE  A V +++ +G  P+ +A       V++ L
Sbjct: 69  TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.7 bits (229), Expect = 1e-22
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           GA+  +       +++H  A  G  + L+  L   AD + ED+EG   LH A   G ++ 
Sbjct: 60  GAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118

Query: 278 AQILLEAGA-NVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
            + L++  A NV   +   +TA   A  YGR E V+L+  NGA 
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 89.0 bits (222), Expect = 1e-21
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
                L  A   G+++    LL+   NV+A +    TAL      G  E    LL  GA 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62

Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             L++  G   I  A      D L+ L
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTL 89

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 56.6 bits (138), Expect = 6e-10
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           + +     L  AA  G  E +  LL+N   V  QN  G+T + V KL +  ++ + L
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRL 56

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  110 bits (277), Expect = 1e-29
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 234 HHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
              A+ GD + ++  L       D  +  G+TAL     +G    A  LL+ GA+ +  D
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQD 65

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
            +  + +H AA  G  + + +L+E+GA V + +  G  PI +A       V+  L  ++
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  107 bits (269), Expect = 2e-28
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN 294
                G        L  GA  + +D+ G + +H A   G +   ++L+E GA+V+  D  
Sbjct: 41  QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100

Query: 295 KNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
               +H A   G    V+ L    + +  ++  G TP+++A      D++ +L
Sbjct: 101 GALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 86.3 bits (215), Expect = 1e-20
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 262 GRTALHFACGYGEVKCAQILLEA-GANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
               L  A   G+V+  + LL     + DAL++   TAL     +G       LL+ GA+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             +Q+  G +P+  A      D LK+L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVL 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 81.3 bits (202), Expect = 8e-19
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +  GAD +  D  G   +H A   G       L    +++   D    T L  A   G +
Sbjct: 88  VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQ 146

Query: 309 ECVALLLE 316
           + V +L  
Sbjct: 147 DLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.0 bits (113), Expect = 9e-07
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 296 NTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
              L  AA  G  + V  LL          N  GKT + V    S    L+LL++ A
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  109 bits (275), Expect = 1e-29
 Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 1/105 (0%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L AGAD + +D  GRT LH A   G ++  ++LLEAGA+V+A DKN  T LH AA  G  
Sbjct: 22  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKDAF 352
           E V LLLE GA V  ++ +G+TP+ +A  N   +V+K LLE  A+
Sbjct: 82  EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 95.1 bits (238), Expect = 3e-24
 Identities = 42/86 (48%), Positives = 56/86 (65%)

Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
           GRT LH A   G ++  ++LLEAGA+V+A DKN  T LH AA  G  E V LLLE GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 322 TLQNMDGKTPIDVAKLNSQHDVLKLL 347
             ++ +G+TP+ +A  N   +V+KLL
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 55.0 bits (134), Expect = 8e-10
 Identities = 25/54 (46%), Positives = 33/54 (61%)

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           N  T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+KLL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (277), Expect = 2e-29
 Identities = 42/130 (32%), Positives = 73/130 (56%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           G+      G++    +   A  G  + ++  +A GAD + ED+ G T LH A   G ++ 
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
            ++LL+ GA+V+A+D    T L  AA +G  E V +LL+NGA V   +M+G TP+ +A +
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122

Query: 338 NSQHDVLKLL 347
               +++++L
Sbjct: 123 FGHLEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  108 bits (273), Expect = 7e-29
 Identities = 39/99 (39%), Positives = 58/99 (58%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GAD +  D  G T L  A  +G ++  ++LL+ GA+V+A D   +T LH AA +G  
Sbjct: 67  LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           E V +LL+NGA V  Q+  GKT  D++  N   D+ ++L
Sbjct: 127 EIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  111 bits (281), Expect = 3e-29
 Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 249 LAAGADKDEEDSE-GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
           L  GAD D  D + GR+ L  A     +   Q+LL+ GANV+A   + ++ALH A+G G 
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195

Query: 308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              V  L+ +GA  +L+N    TP+ VA+     D+L+  
Sbjct: 196 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  107 bits (269), Expect = 2e-27
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 234 HHTASVGDAEG----LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
           H     G+       +      G + D  ++  +T LH A         ++L+ AGA+  
Sbjct: 14  HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM 73

Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGAAVTL----QNMDGKTPIDVAKLNSQHDVLK 345
           ALD++  TA H A  +    C+  LL++ A  TL    +N DG T + VA      + ++
Sbjct: 74  ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

Query: 346 LL 347
           LL
Sbjct: 134 LL 135

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 99.4 bits (249), Expect = 1e-24
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 250 AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRK 308
               D +  + +G TALH A      +  Q+LLE GA++DA+D K+  + L +A      
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             V LLL++GA V  Q   G + +  A       +++ L
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 97.9 bits (245), Expect = 5e-24
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLE----AGANVDALDKNKNTALHYAAGYGRKECV 311
              D +G T LH A   G +     L+      G  +D  +  + T LH A        V
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62

Query: 312 ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            LL+  GA+    +  G+T   +A  +     L+ L
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.7 bits (229), Expect = 9e-22
 Identities = 17/71 (23%), Positives = 31/71 (43%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GA+ + +   G +ALH A G G +   + L+ +GA+    + + +T L  A      
Sbjct: 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 229

Query: 309 ECVALLLENGA 319
           + +       A
Sbjct: 230 DILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLE----NGAAVTLQNMDGKTPIDVAKLNSQHDV 343
               D++ +T LH A   G    V  L+      G  + + N   +TP+ +A + +   V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 344 LKLL 347
           ++LL
Sbjct: 62  VRLL 65

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.0 bits (118), Expect = 5e-07
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
           + +GAD   ++    T L  A     +   +      A+
Sbjct: 203 VRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  111 bits (281), Expect = 4e-29
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
                 G  E  +  + AG D  + D E  T LH+A     +   +  +  GA VD L  
Sbjct: 14  VKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG 73

Query: 294 NKN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           + N T LH+A   G    V  L++ GA  +L + +G + I +A       ++  L
Sbjct: 74  DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  110 bits (278), Expect = 8e-29
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 2/101 (1%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG-EVKCAQILLEAGANVDALDK-NKNTALHYAAGYG 306
           +A G D D  D  G T L +A      V   ++LL    +V+  DK +KNTALH+A   G
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188

Query: 307 RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
               ++LLLE GA V  QN+ G++ +D+AK      ++  L
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  102 bits (256), Expect = 1e-25
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 3/134 (2%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSE-GRTALHFACGYGE 274
            AG D   +   E+ +++H  A     + +K  ++ GA  D+   +   T LH+A   G 
Sbjct: 30  EAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88

Query: 275 VKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
           +     L++ GA+   +D    + +H AA +G    VA L+  G  V + + +G TP+  
Sbjct: 89  LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 148

Query: 335 AKLNS-QHDVLKLL 347
           A   +   D  +LL
Sbjct: 149 AAYRTHSVDPTRLL 162

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 96.7 bits (242), Expect = 1e-23
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
              D      +  A  YG  +  + L+EAG +V   DK   T LH+AA   R + V   +
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 316 ENGAAVTLQNMD-GKTPIDVAKLNSQHDVLKLL 347
             GA V     D   TP+  A       ++  L
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 88.6 bits (221), Expect = 9e-21
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 249 LAAGADKDEED-SEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
           L      +  D     TALH+A   G      +LLEAGANVDA +    +AL  A     
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222

Query: 308 KECVALLLENGAAVTLQN 325
              +  L E   A    N
Sbjct: 223 VWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 66.7 bits (164), Expect = 6e-13
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 346
           ++  +D      +  A  YG  E    L+E G  V   + +  T +  A +N++ D++K 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 347 L 347
            
Sbjct: 61  Y 61

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  107 bits (271), Expect = 9e-29
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
              A+ G  E ++  L AGA+ +  +S GR  +      G  + A++LL  GA  +  D 
Sbjct: 17  ATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP 75

Query: 294 NKNT-ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              T  +H AA  G  + + +L   GA + +++  G+ P+D+A+     DV + L
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 99.5 bits (249), Expect = 2e-25
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRT-ALHFACGYGEVKCAQILLEAGANVDALDK 293
               +G A   +  L  GA+ +  D    T  +H A   G +    +L  AGA +D  D 
Sbjct: 50  QVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 343
                +  A   G ++    L             G     +       D+
Sbjct: 110 WGRLPVDLAEELGHRDVARYLRAAAG-----GTRGSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 92.9 bits (232), Expect = 5e-23
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +   A    E       L  A   G V+  + LLEAGAN +A +      +      G  
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57

Query: 309 ECVALLLENGAAVTLQNMDGKT-PIDVAKLNSQHDVLKLL 347
               LLL +GA     +    T P+  A      D L +L
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  110 bits (276), Expect = 1e-28
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 5/137 (3%)

Query: 216 NAGAD--EAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
                  +A         ++   A  G+ E ++ A+    D  + + EG TALH A    
Sbjct: 6   RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGA 65

Query: 274 EVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPI 332
                  L+ AGANV++ D +  T LH AA          L+++GAA+    + DG T  
Sbjct: 66  NYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAF 125

Query: 333 DVAKL--NSQHDVLKLL 347
           +          D    L
Sbjct: 126 EKCDPYREGYADCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 88.5 bits (220), Expect = 1e-20
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNK-NTALHYAAGY-- 305
           + AGA+ +  DS G T LH A    +      L++ GA + A   +   TA      Y  
Sbjct: 74  ITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133

Query: 306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
           G  +C   L +   ++ L N      +         ++     +  
Sbjct: 134 GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESV 179

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 71.9 bits (177), Expect = 7e-15
 Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 5/129 (3%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEED-SEGRTALHFACGY--GE 274
           GA+      +   + +H  AS  D       +  GA       S+G TA      Y  G 
Sbjct: 77  GAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGY 135

Query: 275 VKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
             CA  L +   ++  ++     AL   +     E ++        V  ++   +T    
Sbjct: 136 ADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLRRDGPEETDWWW 194

Query: 335 AKLNSQHDV 343
           A L+ Q   
Sbjct: 195 AALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 279 QILLEAGANVDALDKNKN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           + +L    +     + +      L  AA  G  E V   ++     +  N +G T +  A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 336 KLNSQHDVLKLL 347
              + + ++  L
Sbjct: 62  ICGANYSIVDFL 73

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 19/122 (15%), Positives = 28/122 (22%), Gaps = 10/122 (8%)

Query: 216 NAGADEAEEVGNEDESIVHHTASV---GDAEGLKNALAAGADKDEEDSEGRTALHFAC-- 270
             GA         D +           G A+               +S    AL      
Sbjct: 108 QHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE 166

Query: 271 GYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVA-LLLENGAAVTLQNMDGK 329
              E+            V   D  + T   +AA +G++  V          V  Q    K
Sbjct: 167 FGDELS---FREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVK 223

Query: 330 TP 331
             
Sbjct: 224 HH 225

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  109 bits (274), Expect = 1e-28
 Identities = 32/99 (32%), Positives = 57/99 (57%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L+ G++ + +D  G+T L ++  +G  + +  LLE GANV+  +    T L  A+ YGR 
Sbjct: 88  LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           E V  LLE GA ++ +++ G T    A++  + +V+K+ 
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  104 bits (262), Expect = 6e-27
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +      +++D EG TAL +A     +  A+ LL  G+NV+  D +  T L ++  +G  
Sbjct: 55  VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYS 114

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           E    LLE+GA V  +N++G+TP+ VA    + +++K L
Sbjct: 115 EMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 99.0 bits (248), Expect = 6e-25
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 9/123 (7%)

Query: 227 NEDESIVHHTASVGDAEGLKNALAAGAD--KDEEDSEGRTALHFACGYGEVKCAQILLEA 284
           +++  IV            + ++    D  ++  DS  RT L  AC  G       L+E 
Sbjct: 5   DKNGEIVEKIKD-------EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 285 GANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL 344
              ++  D   +TAL +A    R      LL  G+ V  ++  GKTP+  + +    ++ 
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

Query: 345 KLL 347
             L
Sbjct: 118 YFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 87.8 bits (219), Expect = 8e-21
 Identities = 25/72 (34%), Positives = 37/72 (51%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GA+ ++ + EG T L  A  YG  +  + LLE GA++ A D    TA   A  +GR+
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180

Query: 309 ECVALLLENGAA 320
           E + +  E   A
Sbjct: 181 EVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 30/90 (33%)

Query: 285 GANVDALDKNKNTALHYAAGYG---------------------------RKECVALLLEN 317
           G++   +DKN                                        +  +  L+EN
Sbjct: 1   GSH---MDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 318 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              +  ++++G T +  A  N++  + + L
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  111 bits (279), Expect = 1e-28
 Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 2/136 (1%)

Query: 214 ADNAGADEAEEVGNEDESIVHHTASV-GDAEGLKNALAAGADKDEEDSEGRTALHFACGY 272
           +D       +   +   +     +    + E            + E+ +G T LH A  +
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168

Query: 273 GEVKCAQILLEAGANVDALDKNK-NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP 331
            + +  ++L +AGA+++  +     T LH A        + LLL+ GA  T +   G+TP
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228

Query: 332 IDVAKLNSQHDVLKLL 347
           +  A L     + +LL
Sbjct: 229 LGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (276), Expect = 4e-28
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 249 LAAGADKDEEDSE-GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
             AGAD ++ +   GRT LH A         ++LL+AGA+  A      T L  A     
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237

Query: 308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
                LL  +GA       D  +P   +  +S  D     ++
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 98.0 bits (245), Expect = 9e-24
 Identities = 29/132 (21%), Positives = 44/132 (33%), Gaps = 17/132 (12%)

Query: 234 HHTASVGDAEGLKNALAAGADK---DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
           H          L   L   A     D ++  G+TALH A   GE    + L  AGA V  
Sbjct: 14  HLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73

Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV--------------AK 336
            ++  +TALH A       C  +LL+   +      D                     ++
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133

Query: 337 LNSQHDVLKLLE 348
            N +++     E
Sbjct: 134 PNPENEEEPRDE 145

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 97.6 bits (244), Expect = 1e-23
 Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGAN---VDALDKNKNTALHYAAGYGRKECVALLL 315
             +G TALH A  +        LL   A    +D  +    TALH AA  G    V  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 316 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             GA V +    G T + +A     H    +L
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.9 bits (211), Expect = 5e-19
 Identities = 16/70 (22%), Positives = 22/70 (31%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L AGAD       GRT L  A        A++L   GA       +K +    +      
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271

Query: 309 ECVALLLENG 318
           +      E  
Sbjct: 272 DNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 82.2 bits (204), Expect = 4e-18
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 3/114 (2%)

Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN 294
              S    +     L    D   + S    A   +    E +      +    ++A + +
Sbjct: 100 PRPSH-PRDASDTYLTQSQDCTPDTSHA-PAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157

Query: 295 KNTALHYAAGYGRKECVALLLENGAAVTLQNMD-GKTPIDVAKLNSQHDVLKLL 347
            +T LH A  +   E V LL + GA +       G+TP+ +A       VL+LL
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGA---AVTLQNMDGKTPIDVAKLNSQHDVL 344
              + ++ +TALH A  +  +  +  LL   A    + LQN  G+T + +A +  +   +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 345 KLL 347
           + L
Sbjct: 62  EKL 64

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  108 bits (273), Expect = 2e-28
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 227 NEDESIVHHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAG 285
             +   +   A+  D + +K  L       DE D+EG T L+ A    +++ A+ L++ G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 286 ANVDALDKNKNTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVL 344
           A+++  +   ++   YA   GR E +A +L++    +   N  G   +  A      D +
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 345 KLL 347
           KLL
Sbjct: 123 KLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 99.4 bits (249), Expect = 6e-25
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA-DKDEEDSEGRTALHFACGYGE 274
           + GAD      +  +S   +  + G  E L   L     D ++ +  G  AL  A   G 
Sbjct: 60  DRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 275 VKCAQILLEAG-ANVDALDKNKNTALHYAAGY-----GRKECVALLLENGAAVTLQNMDG 328
           +   ++LLE G  ++D  +    TAL  A G        ++ V LL+ENGA  ++++  G
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG 178

Query: 329 KTPIDVAKLNSQHDVLKLL 347
           +T +D A      ++ K+L
Sbjct: 179 RTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 92.1 bits (230), Expect = 3e-22
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-NVDALDKNKNTALHYAAGYGR 307
           +  GAD + ++S   +   +A   G  +    +L+    +++  ++    AL  AA  G 
Sbjct: 59  IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 308 KECVALLLENGAA-VTLQNMDGKTPIDVA-----KLNSQHDVLKLL 347
            + V LLLE+G   +  QN  G T +  A           D++KLL
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 77.5 bits (192), Expect = 5e-17
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 253 ADKDEEDSEGRTALHFACGYGEVK-----CAQILLEAGANVDALDKNKNTALHYAAGYGR 307
            D D ++  G TAL  A G  E         ++L+E GA+    D +  TA+ YA   G 
Sbjct: 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190

Query: 308 KECVALLLE 316
            E   +L +
Sbjct: 191 TEISKILAQ 199

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  110 bits (277), Expect = 3e-28
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 3/113 (2%)

Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN 294
              +   ++ LK+   +  D  + D  G +A ++A     V+    LL AGA  +     
Sbjct: 5   SRINTWKSKQLKS-FLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--LE 61

Query: 295 KNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
               LH AA     + V +LL +G   +  +  G T +  A  +     +KL 
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF 114

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  103 bits (260), Expect = 7e-26
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H  A++ D + +K  L +G D  + D +G TAL++A   G ++  ++ ++    +    K
Sbjct: 67  HQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK 126

Query: 294 N-KNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKDA 351
               T+ ++A        V+  L    +         + I +   N   D++  LL+   
Sbjct: 127 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMT 185

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (258), Expect = 1e-25
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           ++  +  +   +   L AGA K+  +      LH A    + K  +ILL +G +    D 
Sbjct: 36  YYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD 93

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG-KTPIDVAKLNSQHDVLKLL 347
             NTAL+YA   G  + V L ++    +      G KT    A + +   ++   
Sbjct: 94  KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 88.7 bits (221), Expect = 2e-20
 Identities = 13/115 (11%), Positives = 35/115 (30%), Gaps = 9/115 (7%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           +H   + D   +   L+       + +   + +H     G V    +LL+   + +  + 
Sbjct: 134 YHAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS 192

Query: 294 NKNT-ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
                 +  A      E +  L +          +  +      L    ++ K++
Sbjct: 193 LLFIPDIKLAIDNKDIEMLQALFKYDI-------NIYSANLENVLLDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.9 bits (211), Expect = 4e-19
 Identities = 13/108 (12%), Positives = 34/108 (31%), Gaps = 12/108 (11%)

Query: 249 LAAGADKDEEDSEGRT-ALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
           L      +  +S      +  A    +++  Q L +   N+        +A         
Sbjct: 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDD 233

Query: 308 KECVALLLENGAAVTLQNMDGKTPI----DVAKLNSQHDVLKLLEKDA 351
            E   +++E        +      I     + ++ S++  L+L+  + 
Sbjct: 234 AEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNC 281

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  107 bits (270), Expect = 8e-28
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 251 AGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKEC 310
              D ++  ++G T LH A G    + +Q L+E GA+V   DK     LH AA  G  + 
Sbjct: 96  LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155

Query: 311 VALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           + LL   G + V  Q+  G TP+  A      D   LL
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  100 bits (252), Expect = 3e-25
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN-VDALDKNKNTALHYAAGYGR 307
           +  GA    +D   +  LH A   G +K  ++L   G + V+  DK   T L +A   G 
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186

Query: 308 KECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            +   LL+E  GA   L +  G    DVA       V K  
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDVA---LNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 98.7 bits (247), Expect = 2e-24
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 234 HHTASVGDAEGLKNALAAGAD---KDEEDSEGRTALHFACGYGEVKCAQILLE--AGANV 288
           H + S    E     L+   +    D  D  G T  H AC  G ++  + L +     ++
Sbjct: 41  HWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100

Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           + +     T LH A G    E    L+ENGA+V +++   + P+  A       +++LL
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 97.5 bits (244), Expect = 5e-24
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV---DALDKNKNTALHYAAGYGRK 308
            +   ++D +GR  LH++  +   +    LL    NV   D  D +  T  H A   G  
Sbjct: 26  PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85

Query: 309 ECVALLLEN--GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           E V  L +      +      G T + +A      +V + L
Sbjct: 86  EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 89.0 bits (222), Expect = 5e-21
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 262 GRTALHFACGYGEVK-CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
               LH AC   E     ++L    + +   D++    LH++  +   E  + LL     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 321 VTLQNM---DGKTPIDVAKLNSQHDVLKLL 347
           V L +     G TP  +A      +V+K L
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  104 bits (263), Expect = 9e-27
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
           + H       E ++      A  + +++  +T LH A    + + A+ LL AG + +  D
Sbjct: 16  IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD 75

Query: 293 KNKNTALHYAAGYGRKECVALLLENGA------AVTLQNMDGKTPIDVAKLNSQHDVLKL 346
              NT LH A   G    V +L ++         +   N +G T + +A ++    +++L
Sbjct: 76  FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 135

Query: 347 L 347
           L
Sbjct: 136 L 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 99.2 bits (248), Expect = 1e-24
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADK------DEEDSEGRTALHFA 269
            AG D  E       + +H     G    +     +             +  G T LH A
Sbjct: 66  GAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124

Query: 270 CGYGEVKCAQILLEAGANVDALDK-NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 328
             +G +   ++L+  GA+V+A +  N  TALH A      + V+LLL+ GA V      G
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184

Query: 329 KTPIDVAKLNSQHDVLKLL 347
            +P  +        + + L
Sbjct: 185 YSPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 98.0 bits (245), Expect = 4e-24
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 1/131 (0%)

Query: 214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE-EDSEGRTALHFACGY 272
                    +       + +H  +  G    ++  ++ GAD +  E   GRTALH A   
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161

Query: 273 GEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
                  +LL+ GA+V+ +     +      G         L +          + +   
Sbjct: 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEE 221

Query: 333 DVAKLNSQHDV 343
                +   + 
Sbjct: 222 SYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 93.0 bits (232), Expect = 2e-22
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 255 KDEEDSEGRTALHFACGYGEVKCA----QILLEAGANVDALDKNKNTALHYAAGYGRKEC 310
           K +   +G + LH A  + E        + +    A ++  +  + T LH A    + E 
Sbjct: 1   KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60

Query: 311 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              LL  G    L++  G TP+ +A        + +L
Sbjct: 61  AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  103 bits (258), Expect = 1e-26
 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 21/152 (13%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNA-----LAAGADKDEEDSEGRTALHFAC 270
             G ++ E   +  +S + +     + +  +       +  GAD      EG T      
Sbjct: 27  EKGYEDKE---SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83

Query: 271 GYG------EVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV-------ALLLEN 317
             G        +  +I LE GA++ AL K     +         +          +  ++
Sbjct: 84  QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS 143

Query: 318 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           G  + +++  G T ++  K   +   LK++E 
Sbjct: 144 GLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 9/129 (6%)

Query: 234 HHTASVGDAEGLKNALAAGADK---DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
              A +G  E        G +      + +     L         K +  L+  GA++ +
Sbjct: 11  SAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70

Query: 291 LDKNKNTALHYAAGYGRK------ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL 344
             K   T        G        E   + LE GA +T      K  +     N   D  
Sbjct: 71  RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN 130

Query: 345 KLLEKDAFL 353
           +++     +
Sbjct: 131 EMIPLYKLI 139

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 79.7 bits (197), Expect = 7e-18
 Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 7/98 (7%)

Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQ-------ILLEAGAN 287
                G  E  K  L  GAD        +  +        V   +       I  ++G  
Sbjct: 87  GNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ 146

Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQN 325
           +   DK   TAL +     +   + ++ +      L+ 
Sbjct: 147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 3/96 (3%)

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN---TALHYAAGYGRKECVALLLEN 317
                +  A   G  +    L E G          N     L       R +    L+  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 318 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 353
           GA +  +  +G T          +D+    E     
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 8/86 (9%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNA-------LAAGADKDEEDSEGRTALHF 268
             GAD    +    + +V         +  +           +G     +D  G TAL F
Sbjct: 102 EKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

Query: 269 ACGYGEVKCAQILLEAGANVDALDKN 294
                +    +++ +     +  + +
Sbjct: 161 VKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 4/63 (6%)

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQN---MDGKTPIDVAKLNSQHDVLK-LLE 348
            ++   +  AA  G  E    L E G                +      +++ +   L+ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 349 KDA 351
           K A
Sbjct: 64  KGA 66

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  100 bits (253), Expect = 1e-26
 Identities = 35/98 (35%), Positives = 48/98 (48%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H+ A  G AE +K  L+ GAD +    +G T LH A   G  +  ++LL  GA+V+A  K
Sbjct: 14  HNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK 73

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP 331
           + NT  H A   G  E V LL   GA V  ++      
Sbjct: 74  DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 99.8 bits (250), Expect = 4e-26
 Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
           G     +D  G T LH A   G  +  + LL  GA+V+A  K+ NT LH AA  G  E V
Sbjct: 1   GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 312 ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            LLL  GA V  ++ DG TP  +AK N  H+++KLL
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.1 bits (173), Expect = 3e-15
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY 301
           LA GAD +    +G T  H A   G  +  ++L   GA+V+A     +   H+
Sbjct: 62  LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  100 bits (252), Expect = 2e-26
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           +  G+    +       L  A   G+    +IL+  GA+V A DKN +T LH AA  G  
Sbjct: 14  VPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL 70

Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
           E V LLLE GA V  Q+  GKT  D++  N   D+ ++L+
Sbjct: 71  EVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 71.8 bits (177), Expect = 7e-16
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 269 ACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 328
              +     +  L+  G+++ +   +    L  AA  G+ + V +L+ NGA V  ++ +G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 329 KTPIDVAKLNSQHDVLKLL 347
            TP+ +A  N   +V+KLL
Sbjct: 58  STPLHLAARNGHLEVVKLL 76

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  105 bits (265), Expect = 2e-26
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 1/115 (0%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSE-GRTALHFACGYGEVKCAQILLEAGANVDALD 292
                  D + ++  L  GA+ + ++ E G T LH A         ++LL  GA+     
Sbjct: 10  IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 69

Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           KN  T    AA  G  + + L L  GA V   +  G T    A +  +   LK L
Sbjct: 70  KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  104 bits (263), Expect = 3e-26
 Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L  GAD       G T    A   G VK  ++ L  GA+V+  D    TA   AA YG+ 
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118

Query: 309 ECVALLLENGAAVTLQNMD----------GKTPIDVAKLNSQHDVLKLL 347
           + +  L + GA V L+             G T +  A      +VLK+L
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  100 bits (252), Expect = 1e-24
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 251 AGADKDEEDSEGRTALHFACGYGEVKC----AQILLEAGANVDALDKNKNTALHYAAGYG 306
            GAD +  D+ GR AL  A    +         +LL+ GA+V+   +   T L  A    
Sbjct: 171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230

Query: 307 RKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
               V  LLE     +   + DGKT + +A       + +LL
Sbjct: 231 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 93.3 bits (233), Expect = 5e-22
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN-KNTALHYAAGYGRKECVALLLEN 317
             E    L  A    +V   Q LLE GANV+  ++    T LH A    R++ V LLL +
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 318 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           GA   L+  +G TP  +A +     +LKL 
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLF 91

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 93.3 bits (233), Expect = 5e-22
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNA----LAAGADKDEEDSEGRTALHFAC 270
           D  GAD      N   + + H     D   ++      L  GAD +     G+T L  A 
Sbjct: 169 DEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 271 GYGEVKCAQILLE-AGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNM 326
               +   Q LLE     ++  D +  TAL  A     K+   LL + GA+    ++
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.8 bits (216), Expect = 1e-19
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILL-EAGANVDALDKNKNTALHYAAGYGR--- 307
             D++     G TAL  A   G V+  +ILL E GA+V+A D     AL +A        
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197

Query: 308 -KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            +    LLL++GA V ++   GKTP+ +A       +++ L
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  103 bits (259), Expect = 3e-26
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 226 GNEDESIVHHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA 284
           G     ++ + A  G  + LK  + A  +     D + RTALH+AC  G  +  + LL+ 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 285 GANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL 344
           G  V+  D    + LH AA  G  E V  LL  GA V   N +G TP+  A   ++H++ 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122

Query: 345 KLL 347
            +L
Sbjct: 123 VML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.9 bits (223), Expect = 3e-21
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 1/130 (0%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
            +  A     +  + +H   S G  E ++  L  G   +++D  G + LH A   G  + 
Sbjct: 30  KSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEI 88

Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
            + LL  GA+V+A+++N  T LHYAA   R E   +LLE GA    ++    T +  A  
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148

Query: 338 NSQHDVLKLL 347
                ++ +L
Sbjct: 149 KGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.9 bits (210), Expect = 2e-19
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 2/127 (1%)

Query: 221 EAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQI 280
               V     + +H+ AS    E     L  GA+ D +D    TA+H A   G +K   I
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 281 LLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ 340
           LL   A+ +  D   NT LH A    R E    L+  GA++ ++N + KTP+ VAK    
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GG 215

Query: 341 HDVLKLL 347
             ++   
Sbjct: 216 LGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 83.4 bits (206), Expect = 6e-19
 Identities = 41/114 (35%), Positives = 58/114 (50%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H  AS G  E +K  L  GA  +  +  G T LH+A      + A +LLE GAN DA D 
Sbjct: 78  HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              TA+H AA  G  + V +LL   A+  +Q+ +G TP+ +A    + +  K L
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.7 bits (173), Expect = 2e-14
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 221 EAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQI 280
             +   + D + +H  A+ G+ + +   L   A  + +D+EG T LH AC    V+ A+ 
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190

Query: 281 LLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
           L+  GA++   +K + T L  A G      +   L  G 
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAKGG--LGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 221 EAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQI 280
                  E  + +H        E  K  +  GA    E+ E +T L  A G   +     
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL--ILK 221

Query: 281 LLEAGANVD 289
            L  G    
Sbjct: 222 RLAEGEEAS 230

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  102 bits (257), Expect = 7e-26
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             G     +      +++  ++  G+ + ++  +    D    + EG TALH A   G  
Sbjct: 26  AHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT 83

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA---AVTLQNMDGKTPI 332
           +  + L++ G NV+A D +  T LH AA     +    L+E+GA   A+T  +M      
Sbjct: 84  EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143

Query: 333 DVAKLNSQHDVLKLL 347
                       + L
Sbjct: 144 CEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 91.9 bits (229), Expect = 7e-22
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN---TALHYAAGY 305
           +  G + +  DS+G T LH A     V+  + L+E+GA V A+  +              
Sbjct: 90  VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149

Query: 306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
           G  +C   L      + + N      +   +     D L + E D
Sbjct: 150 GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ-NDDELPMKEGD 193

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 87.7 bits (218), Expect = 3e-20
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
           +  G+ +L         K     +  G  V   +      L  ++  G  + V  ++   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              +L N +G T +  A      +++K L
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFL 89

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 8/110 (7%)

Query: 234 HHTASVGDAEGLKNALAAGAD---KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
           H  AS  + +  K  + +GA        D +           G  +C+Q L      +  
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167

Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMD--GKTPIDVAKLN 338
           ++K    AL         E   L ++ G  +T+ + +   +     A+LN
Sbjct: 168 MNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWARLN 214

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  103 bits (260), Expect = 3e-25
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 13/147 (8%)

Query: 213 SADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNA---LAAGAD--------KDEEDSE 261
           ++     D  EE+     + +   A     + + +A   +  GA         KD E  +
Sbjct: 220 NSTKLKGD-IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278

Query: 262 GRTALHFACGYGEVKCAQILL-EAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
           GRTALH+A     +   + L+ E G+N D  D++  T +  AA  GR E V  L++ GA+
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 338

Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           V   +    T   +A+ N+ H+++ + 
Sbjct: 339 VEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 99.6 bits (249), Expect = 1e-23
 Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 17/149 (11%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAE--------GLKNALAAGADKDEEDSEGRTALHFA 269
             +  +     + +++H  AS   AE          K  +AAGAD +  D +  T L  A
Sbjct: 116 SVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 173

Query: 270 CGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN---GAAVTLQNM 326
                 +    L++AGA+    +K++ +ALH AA       +  +L +      +   + 
Sbjct: 174 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233

Query: 327 DGKTPIDVAKLNSQHDVLK----LLEKDA 351
           +G T + +   N   D +     L+EK A
Sbjct: 234 NGMTALMIVAHNEGRDQVASAKLLVEKGA 262

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 89.2 bits (222), Expect = 4e-20
 Identities = 18/68 (26%), Positives = 34/68 (50%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
           G++KD++D +G+T +  A   G ++    L++ GA+V+A+D   +TA   A        V
Sbjct: 303 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 362

Query: 312 ALLLENGA 319
            +      
Sbjct: 363 DIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 5/127 (3%)

Query: 224 EVGNEDESIVHHTASVGDAEGLKNALAAG---ADKDEEDSEGRTALHFACGYGEVKCAQI 280
            + NE+++  +H +       L  A   G     ++E             G G       
Sbjct: 20  PMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDF 79

Query: 281 LLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ 340
                      +      LH  A  G       +      +       +T +     NS 
Sbjct: 80  NHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSS 137

Query: 341 HDVLKLL 347
            +  + L
Sbjct: 138 AEKSEDL 144

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 64.6 bits (158), Expect = 9e-12
 Identities = 10/100 (10%), Positives = 20/100 (20%), Gaps = 9/100 (9%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
                +  +  + +L  A   G +K            + L            G G     
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIK---------RQRNELQHYSLYPNPQGYGNGNDFLG 77

Query: 312 ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
                N    T    +    +      S      +  +  
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRESV 117

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             G++  ++   + ++ +   A  G  E +   +  GA  +  D+   TA   A      
Sbjct: 301 EKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH 359

Query: 276 KCAQILLEAGANVD 289
               I        +
Sbjct: 360 NIVDIFDRCRPERE 373

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 96.3 bits (241), Expect = 4e-25
 Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
           GRT LH A   G ++  ++LLEAGA+V+A DKN  T LH AA  G  E V LLLE GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 322 TLQNMDGKTPIDVAKLNSQHDVLK-LLEKDAF 352
             ++ +G+TP+ +A  N   +V+K LLE  A+
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 92.0 bits (230), Expect = 2e-23
 Identities = 38/71 (53%), Positives = 46/71 (64%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
           L AGAD + +D  GRT LH A   G ++  ++LLEAGA+V+A DKN  T LH AA  G  
Sbjct: 22  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81

Query: 309 ECVALLLENGA 319
           E V LLLE GA
Sbjct: 82  EVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 55.1 bits (134), Expect = 3e-10
 Identities = 25/54 (46%), Positives = 33/54 (61%)

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           N  T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+KLL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  102 bits (256), Expect = 1e-24
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 251 AGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKEC 310
              ++ + D E    +H A   G+    + L+E G +    ++   TALH A  +G  + 
Sbjct: 9   PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDT 68

Query: 311 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              L   G   +L    G+ PI +A + ++ D++  L
Sbjct: 69  AKYLASVGEVHSLW--HGQKPIHLAVMANKTDLVVAL 103

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =   99 bits (250), Expect = 6e-24
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 246 KNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY 305
                +    D  + +G + LH+A        A   +E G +V+  D      L+ +   
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA 254

Query: 306 GRKECVALLLENGAAVTLQNM-------------DGKTPIDVAKLNSQHDVLKLL 347
                   LL+      +Q                    +  A   S+ +VL+LL
Sbjct: 255 AMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 99.2 bits (248), Expect = 1e-23
 Identities = 11/85 (12%), Positives = 20/85 (23%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
           G     +       +  A    + +  Q+L E    V                       
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 312 ALLLENGAAVTLQNMDGKTPIDVAK 336
            + L   A V  ++        V+K
Sbjct: 340 RMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 96.9 bits (242), Expect = 9e-23
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 13/112 (11%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN-------------VDALDKNK 295
           +  G D + ED+E    L+ +     V   + LL+                 V       
Sbjct: 231 VEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290

Query: 296 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              +  AA   ++E + LL E    V      G       K  +   V ++ 
Sbjct: 291 LDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 96.1 bits (240), Expect = 2e-22
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 12/131 (9%)

Query: 224 EVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE--VKCAQIL 281
           E   E   +     +  D                +  +G+TALH+  G G   ++  +IL
Sbjct: 105 EGAKERGQMPESLLNECD-----EREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL 159

Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLE-----NGAAVTLQNMDGKTPIDVAK 336
           ++ GA+  A DK   T L  A  +  +E + L+++     +   +   N  G + +  A 
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI 219

Query: 337 LNSQHDVLKLL 347
           L +  DV    
Sbjct: 220 LINWEDVAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 94.9 bits (237), Expect = 3e-22
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H  A  G  + ++  +  G     ++  G TALH AC +G V  A+ L   G        
Sbjct: 25  HVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--LW 82

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 346
           +    +H A    + + V  L+E           G+ P  +     + +V ++
Sbjct: 83  HGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNEI 129

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 9/89 (10%), Positives = 20/89 (22%), Gaps = 1/89 (1%)

Query: 214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             + G              V   A     E L+       +     + G           
Sbjct: 276 PYHNGTT-VLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKA 334

Query: 274 EVKCAQILLEAGANVDALDKNKNTALHYA 302
                ++ L   A V    +++  +   +
Sbjct: 335 APAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 97.0 bits (241), Expect = 2e-23
 Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 241 DAEGLKNALAAGADKDEE------DSEGRTALHFACGYGE---VKCAQILLEAGANVDAL 291
           D  GL  A A G D  E+           TALH A    +   +     L++   N+D  
Sbjct: 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201

Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
               +TALHY       EC+ LLL   A++ + N  G+TP+D+AK        +LL +
Sbjct: 202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
            ++   D+    G+   + +H+     +AE LK  L   A  +  +  G T L  A    
Sbjct: 193 QNSGNLDKQTGKGS---TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 249

Query: 274 EVKCAQILLEAGAN 287
              C ++L +A + 
Sbjct: 250 HEHCEELLTQALSG 263

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 95.1 bits (236), Expect = 1e-22
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 9/128 (7%)

Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEE------DSEGRTALHFACGYGEVKC---AQIL 281
             +       D   +  A A G D  +        +     LH A              +
Sbjct: 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212

Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 341
           ++ G ++DA   + NTALHYAA Y + +C+ LLL+  A V   N  G+T +D+A+     
Sbjct: 213 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK 272

Query: 342 DVLKLLEK 349
           +  +LLE+
Sbjct: 273 ECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
           H+ A     + LK  L   A     +  G TAL  A      +C ++L +A A 
Sbjct: 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 92.3 bits (230), Expect = 4e-22
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 27/157 (17%)

Query: 218 GADEAEEVGNED----ESIVHHTASVGDAEGLKNALAAGADKDEED-------------S 260
             +   E    +    ++ +H      +   ++  LA GA                    
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVA----LLLE 316
            G   L FA   G  +  ++L+E GA++ A D   NT LH       K        LLL 
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179

Query: 317 NGAAV------TLQNMDGKTPIDVAKLNSQHDVLKLL 347
                       + N  G TP  +A +     + + L
Sbjct: 180 YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 91.9 bits (229), Expect = 6e-22
 Identities = 40/157 (25%), Positives = 58/157 (36%), Gaps = 24/157 (15%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD-----KDEEDSEGRTALHFACGY 272
           G +   + G   E+ +H  A   + E     + A  +        E  EG+TALH A   
Sbjct: 27  GCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN 85

Query: 273 GEVKCAQILLEAGANVDALDKNK-------------NTALHYAAGYGRKECVALLLENGA 319
             V   + LL  GA+V A                     L +AA  G +E V LL+E+GA
Sbjct: 86  QNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA 145

Query: 320 AVTLQNMDGKTPIDVAKLNSQHDVLK-----LLEKDA 351
            +  Q+  G T + +  L             LL  D 
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 91.5 bits (228), Expect = 7e-22
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 19/133 (14%)

Query: 234 HHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV---- 288
              A   D + L   L   G +  +  + G TALH A  Y  ++ A +L+EA   +    
Sbjct: 8   LLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP 67

Query: 289 -DALDKNKNTALHYAAGYGRKECVALLLENGA-------------AVTLQNMDGKTPIDV 334
             +      TALH A        V  LL  GA                     G+ P+  
Sbjct: 68  MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF 127

Query: 335 AKLNSQHDVLKLL 347
           A      ++++LL
Sbjct: 128 AACVGSEEIVRLL 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 86.9 bits (216), Expect = 4e-20
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 262 GRTALHFACGYGEVKC-AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
             + L  A    +V+  +++L   G  V        TALH AA Y   E   +L+E    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 321 VTLQNM-----DGKTPIDVAKLNSQHDVLKLL 347
           +  + M     +G+T + +A +N   ++++ L
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 94.2 bits (234), Expect = 2e-21
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEE------DSEGRTALHFAC---GYGEVKCA 278
            +   +       D   +  A A G D  +        +     LH A        +   
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190

Query: 279 QILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN 338
             +++ G ++DA   + NTALHYAA Y + +C+ LLL+  A V   N  G+T +D+A+  
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

Query: 339 SQHDVLKLLEKDA 351
              +  +LLE+  
Sbjct: 251 HHKECEELLEQAQ 263

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 89.8 bits (222), Expect = 3e-20
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 234 HHTASVGDAEGLKNALAAGADKD--EEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
             +        + +ALA GAD +      +  T L  A     +   + LL+ GANV+  
Sbjct: 205 RASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA 264

Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
           D      LH+A   G      L L+ GA +  ++ +G+ P+ +A   +  D++ LL 
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 65.6 bits (159), Expect = 4e-12
 Identities = 32/137 (23%), Positives = 46/137 (33%), Gaps = 1/137 (0%)

Query: 182 PSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNED-ESIVHHTASVG 240
           P    +          L  A G          A   GAD     G +D  + +    +  
Sbjct: 187 PEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAAN 246

Query: 241 DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALH 300
                +  L  GA+ ++ DS GR  LH A   G    A + L+ GA++ A D      L 
Sbjct: 247 SLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLT 306

Query: 301 YAAGYGRKECVALLLEN 317
            A      + V LL   
Sbjct: 307 IAMETANADIVTLLRLA 323

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 281 LLEAGANVDAL--DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN 338
            L  GA+V+ +   ++  T L  A           LL+NGA V   +  G+ P+  A + 
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278

Query: 339 SQHDVLKLLEK 349
               +  L  K
Sbjct: 279 GHTGLACLFLK 289

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 85.2 bits (211), Expect = 4e-19
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 20/142 (14%)

Query: 219 ADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCA 278
           A      G  D   +     V             A   +   +G+TALH A     +   
Sbjct: 61  AMLNLHNGQND--TIALLLDVARKTDSLKQFV-NASYTDSYYKGQTALHIAIERRNMTLV 117

Query: 279 QILLEAGANVDALDKNK--------------NTALHYAAGYGRKECVALLLENG---AAV 321
            +L+E GA+V A                      L  AA   +   V  LL+N    A +
Sbjct: 118 TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI 177

Query: 322 TLQNMDGKTPIDVAKLNSQHDV 343
           + ++  G T +      + + V
Sbjct: 178 SARDSVGNTVLHALVEVADNTV 199

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 73.7 bits (181), Expect = 4e-15
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 20/126 (15%)

Query: 246 KNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAG---ANVDALDKNKNTALHYA 302
                           G   L  A    ++   + LL+     A++ A D   NT LH  
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191

Query: 303 AGYGRK----------------ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK- 345
                                    A L        + N  G TP+ +A  + +  VL  
Sbjct: 192 VEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY 251

Query: 346 LLEKDA 351
           +L+++ 
Sbjct: 252 ILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 23/109 (21%)

Query: 250 AAGADKDEEDSEGRTALHFACGYGEVKCAQI---------LLEAGANV-------DALDK 293
              AD    DS G T LH      +               +L  GA +       +  ++
Sbjct: 172 WQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR 231

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD 342
              T L  AA  G+   +A +L+                  A  +  H 
Sbjct: 232 KGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.0 bits (148), Expect = 7e-11
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 22/120 (18%)

Query: 250 AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA-------GANVDALD-KNKNTALHY 301
           +  A +       R ++  A      +  + LL           + +  D +   T L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 302 A---AGYGRKECVALLLENGAA-----------VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           A      G+ + +ALLL+                T     G+T + +A       ++ LL
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 222 AEEVGNEDESIVHHTASVGDA--EGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQ 279
             EV +          S+ +               ++  + +G T L  A   G++    
Sbjct: 191 LVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250

Query: 280 ILLEAGANVDALDKNKNTALHYAAGYG 306
            +L+   +            H AA + 
Sbjct: 251 YILQREIHE-------PECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 12/80 (15%)

Query: 284 AGANVDALDKNKNTALHYAAGYGRKECVALLLE-------NGAAVTLQNMD-GKTPIDVA 335
             A           ++  A      + +  LL               ++ + GKT +  A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 336 KLNSQHD----VLKLLEKDA 351
            LN  +     +  LL+   
Sbjct: 62  MLNLHNGQNDTIALLLDVAR 81

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 83.7 bits (207), Expect = 9e-19
 Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 39/201 (19%)

Query: 184 AMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAE 243
            +         +  L     L +  D+        A    +   +  S +H        +
Sbjct: 51  VLNLQDGVNACIMPL-----LQIDKDSGNPKPLVNAQ-CTDEFYQGHSALHIAIEKRSLQ 104

Query: 244 GLKNALAAGADKDEEDSE-------------GRTALHFACGYGEVKCAQILLEAG---AN 287
            +K  +  GAD                    G   L  A    +      LLE     A+
Sbjct: 105 CVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS 164

Query: 288 VDALDKN----------------KNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP 331
           ++A D                  +N+AL      G  +  A L        + N  G TP
Sbjct: 165 LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP 224

Query: 332 IDVAKLNSQHDVLK-LLEKDA 351
           + +A    + ++ + +L+++ 
Sbjct: 225 LKLAAKEGKIEIFRHILQREF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 76.8 bits (189), Expect = 2e-16
 Identities = 37/154 (24%), Positives = 48/154 (31%), Gaps = 35/154 (22%)

Query: 229 DESIVHHTASVGDAEGLKNALA--------AGADKDEEDSEGRTALHFA---CGYGEVKC 277
           D   +    S G  E L   L                E S G+T L  A      G   C
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 278 AQILLEAG-----------ANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV----- 321
              LL+             A         ++ALH A      +CV LL+ENGA V     
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 322 --------TLQNMDGKTPIDVAKLNSQHDVLKLL 347
                         G+ P+ +A    Q DV+  L
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 73.3 bits (180), Expect = 4e-15
 Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 16/88 (18%)

Query: 250 AAGADKDEEDSEGRTALHF----------------ACGYGEVKCAQILLEAGANVDALDK 293
              A  +  DS G T LH                     G ++    L       +  + 
Sbjct: 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAV 321
              T L  AA  G+ E    +L+   + 
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHILQREFSG 247

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 227 NEDESIVHHTASV-GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAG 285
           N  E+         G  +           ++  + +G T L  A   G+++  + +L+  
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 286 ANVDALDKNKNTALHY 301
            +  A     +   H+
Sbjct: 245 FSGAA----AHHHHHH 256

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 85.4 bits (211), Expect = 1e-18
 Identities = 30/196 (15%), Positives = 50/196 (25%), Gaps = 18/196 (9%)

Query: 173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMG--------LAVGGDATTSADNAGADEAEE 224
           +     S    ++M   + K+ +                L +              +A +
Sbjct: 29  LFQHFISANELSLMTL-SYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHK 87

Query: 225 VGNEDESIVHHTASVGDAEGL---KNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
            G + E I    A  G +  L      L +        +E   A   A   G +     L
Sbjct: 88  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 147

Query: 282 LEAGANVDALDKNKN--TALHYAAGYGRKECVALLLENGA---AVTLQNMDGKTPIDVAK 336
            E                A   AA  G    +  L E         +Q  +       A 
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207

Query: 337 LNSQHDVLK-LLEKDA 351
               H+V+  LL+   
Sbjct: 208 GRGHHNVINFLLDCPV 223

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.5 bits (149), Expect = 8e-11
 Identities = 20/149 (13%), Positives = 40/149 (26%), Gaps = 18/149 (12%)

Query: 214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKD-------EEDSEGRTAL 266
              A A+  E    E          V   + + +A                E  +G   L
Sbjct: 223 VMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYML 282

Query: 267 HFACGYGEVKCAQIL--------LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
                  +      +        ++A A    +  + N  L  A   G +   ALLL   
Sbjct: 283 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 342

Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           + +    +       + +   + D+  + 
Sbjct: 343 SVL---ALTKANNYYINETGGRLDLRAVA 368

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.8 bits (142), Expect = 6e-10
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 248 ALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
            + A A       +    L  A   G      +LL   + +     N     +     GR
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN---NYYINETGGR 361

Query: 308 KECVALLLENGA 319
            +  A+ LE+  
Sbjct: 362 LDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 17/106 (16%)

Query: 249 LAAGADKDEED--SEGRTALHFAC-GYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY 305
                 +      +E   A  +A  G G       LL+    +         A  +   Y
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML-------AYAEIHEFEY 235

Query: 306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
           G K     +  +   +     +      ++   +   V  L+ K  
Sbjct: 236 GEKYVNPFIARHVNRLK----EMHDAFKLS---NPDGVFDLVTKSE 274

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 82.8 bits (204), Expect = 5e-18
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 209 DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE-EDSEGRTALH 267
           +  TS +N  ++   E G+ ++   H +      E          + +   D  G T LH
Sbjct: 77  EMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLH 136

Query: 268 FACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYG---RKECVALLLENGAA-VTL 323
           +      ++  + L++ G+N    D    + L  A              LL+     + L
Sbjct: 137 WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196

Query: 324 QNMDGKTPI 332
           ++   +T +
Sbjct: 197 EDSMNRTIL 205

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.5 bits (185), Expect = 2e-15
 Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 2/126 (1%)

Query: 212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG 271
             A  +      E   + E+ +         E   +     ++++ E             
Sbjct: 46  MKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 105

Query: 272 YGEVK-CAQILLEAGANVDA-LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGK 329
              ++           N++  +D++ NT LH+       E V  L+++G+     +  G+
Sbjct: 106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 165

Query: 330 TPIDVA 335
           + +  A
Sbjct: 166 SCLVKA 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.1 bits (184), Expect = 2e-15
 Identities = 19/91 (20%), Positives = 31/91 (34%)

Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
           +K           E        +       ++   +       ++A D N +T L+ AA 
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 292

Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
            G    V  LL+ GA   + N  G  P+D  
Sbjct: 293 LGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 71.2 bits (174), Expect = 4e-14
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 218 GADEAEEVGNEDESIVHHTASVGD---AEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274
                +   NE ES  +           E L          + +DS G T L+ A   G 
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295

Query: 275 VKCAQILLEAGANVDALDKNKNTALHYAAG 304
           +     LL+ GA+    +K+    + + AG
Sbjct: 296 ISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 65.0 bits (158), Expect = 5e-12
 Identities = 29/260 (11%), Positives = 73/260 (28%), Gaps = 18/260 (6%)

Query: 104 PQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAK 163
           P  D     +        P      +   + L     +   + S       ++ + ++  
Sbjct: 8   PSGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPS--PVVNDNEQKMKLEA 65

Query: 164 IKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAE 223
             +      I +   S    +  +        Q+       ++  +   +  N   +   
Sbjct: 66  FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 125

Query: 224 EVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG---EVKCAQI 280
            V     + +H   S+ + E +K+ +  G+++   D+ G + L  A       +    + 
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 185

Query: 281 LLEA-GANVDALDKNKNTALHYAA------------GYGRKECVALLLENGAAVTLQNMD 327
           LL+     +   D    T LH+               Y     +  +++          +
Sbjct: 186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245

Query: 328 GKTPIDVAKLNSQHDVLKLL 347
            K      K   + D +   
Sbjct: 246 EKESKPNDKNGERKDSILEN 265

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 21/152 (13%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA----AGADKDEEDSEGRTALHFACG 271
             G++      N  ES +       +        A           EDS  RT LH    
Sbjct: 152 KHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII 210

Query: 272 YGEVK------------CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
              +                 +++          N+  +        RK+ +   L+   
Sbjct: 211 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW 270

Query: 320 AVTL----QNMDGKTPIDVAKLNSQHDVLKLL 347
            +      Q+ +G T +++A       ++  L
Sbjct: 271 IIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 79.8 bits (197), Expect = 2e-17
 Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 27/126 (21%)

Query: 253 ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN--------------TA 298
           +   +    G+TALH A         ++L+E GA+V A  + +                 
Sbjct: 84  SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELP 143

Query: 299 LHYAAGYGRKECVALLLENG---AAVTLQNMDGKTP--IDVAKLNSQHDVLK-------- 345
           L  AA   +   V  L ENG   A +  Q+  G T     VA  ++  +  K        
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL 203

Query: 346 LLEKDA 351
           LL K A
Sbjct: 204 LLIKCA 209

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.5 bits (191), Expect = 2e-16
 Identities = 36/155 (23%), Positives = 53/155 (34%), Gaps = 36/155 (23%)

Query: 229 DESIVHHTASVGDAEGLKNA----LAAGADKDEED----SEGRTALHFA---CGYGEVKC 277
           +  I+    S G  +GL+      L       +E+    S G+T L  A      G    
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 278 AQILLEAGANVDALDKNKN-----------TALHYAAGYGRKECVALLLENGAAVTLQN- 325
             ILL+       + +  N           TALH A     K  V LL+E GA V  Q  
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 326 -------------MDGKTPIDVAKLNSQHDVLKLL 347
                          G+ P+ +A   +Q  ++  L
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 20/126 (15%)

Query: 246 KNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAG---ANVDALDKNKNTALHYA 302
           +       D+      G   L  A    +      L E G   A++   D   NT LH  
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 303 AGYG---------RKECVALLLENGAAV-------TLQNMDGKTPIDVAKLNSQHDVLK- 345
                          +   LLL   A +        L N DG +P+ +A    +  + + 
Sbjct: 184 VAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243

Query: 346 LLEKDA 351
           ++ ++ 
Sbjct: 244 IIRREI 249

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.6 bits (173), Expect = 4e-14
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 16/88 (18%)

Query: 250 AAGADKDEEDSEGRTALHFACGYGE---------VKCAQILLEAGANVDA-------LDK 293
              AD   +DS G T LH      +          K   +LL   A +         L+ 
Sbjct: 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN 223

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAV 321
           +  + L  AA  G+      ++    A 
Sbjct: 224 DGLSPLMMAAKTGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 9/85 (10%)

Query: 217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
           A AD   E       +                L A  + D     G + L  A   G++ 
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND-----GLSPLMMAAKTGKIG 239

Query: 277 CAQILLEAGANVDALDKNKNTALHY 301
             Q ++         D   +   H+
Sbjct: 240 IFQHIIRREIA----DAAAHHHHHH 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 2e-11
 Identities = 46/390 (11%), Positives = 100/390 (25%), Gaps = 119/390 (30%)

Query: 37  SGASAASAFPGVGGA-APN-PFDFSAMSGLLNDPSIKELAEQIAKDPAFNS--------- 85
                   F  V      N  F  S +      PS+        +D  +N          
Sbjct: 74  KQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 86  ----MAEQLQK-----------TLHG-------------ANAEESIPQFDTTQYYSTMQQ 117
                  +L++            + G               + +   + D   ++  ++ 
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 118 VMQNPQFMTMAERLGNALMQDPSMSHMMESLTN-PTKKDQIEERMAKIKEDPSLKP---I 173
                  + M ++L   +  DP+ +   +  +N   +   I+  + ++ +    +    +
Sbjct: 192 CNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLA----VGGDATTSADNAGADEAEEVGNED 229
           L  +            N K        A  L+    +     T+      D         
Sbjct: 250 LLNV-----------QNAKAW-----NAFNLSCKILL-----TTRFKQVTDFLSAATTTH 288

Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEED--SEGRTALHFACGYGEVKCAQILLEAGAN 287
            S+ HH+ ++   E   + L    D   +D   E              + + I      +
Sbjct: 289 ISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPRE-------VLTTNPRRLSII----AES 336

Query: 288 V-DALDKNKNTALHYAAGYGRKE-----CVALL--------------LENGAAVTLQ--- 324
           + D L    N   H      +        + +L                  A +      
Sbjct: 337 IRDGLATWDNW-KHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 325 ----NMDGKTPIDVAKLNSQHDVLKLLEKD 350
               ++     + V  +N  H    L+EK 
Sbjct: 394 LIWFDVIKSDVMVV--VNKLHK-YSLVEKQ 420

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 41/217 (18%), Positives = 69/217 (31%), Gaps = 27/217 (12%)

Query: 143 HMMESLTNPTK---KDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKY-WNDKDVLQKL 198
           H M+  T   +   KD +        ++   K + D  +S      + +    KD +   
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 199 GEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE 258
                  +     +  +       EEV   +   +           +K      +     
Sbjct: 65  LRLFWTLL-----SKQEEMVQKFVEEVLRINYKFL--------MSPIKTEQRQPSMMTRM 111

Query: 259 DSEGRTALH-----FACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVAL 313
             E R  L+     FA     V   Q  L+    +  L   KN  +    G G K  VAL
Sbjct: 112 YIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWVAL 168

Query: 314 LLENGAAVTLQNMDGKTP-IDVAKLNSQHDVLKLLEK 349
            +     V    MD K   +++   NS   VL++L+K
Sbjct: 169 DVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.93
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
2etb_A	256	Transient receptor potential cation channel subfam	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.92
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.91
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.91
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.91
2pnn_A	273	Transient receptor potential cation channel subfa	99.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.91
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.9
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.9
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.86
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.84
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.84
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.84
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.79
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.78
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.75
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	95.89
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	94.04
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	90.16
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	87.17
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	84.23
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	83.47
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	83.22
3fp5_A	106	Acyl-COA binding protein; ACBP, cacao disease, fat	80.82
2lbb_A	96	Acyl COA binding protein; protein binding, structu	80.82

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.6e-30  Score=222.55  Aligned_cols=134  Identities=40%  Similarity=0.625  Sum_probs=127.3

Q ss_pred             cCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 018595          217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN  296 (353)
Q Consensus       217 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~  296 (353)
                      .|.++ +..+..|+||||+|+..++.+++++|++.|++++.+|..|+||||+||..|+.++|++|+++|+++|.+|..|+
T Consensus        26 ~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~  104 (169)
T 4gpm_A           26 NGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR  104 (169)
T ss_dssp             TTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCC
Confidence            34443 45688899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       297 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+.+|+.+++++|+++|
T Consensus       105 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A          105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999999999999999987

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=8.8e-29  Score=203.02  Aligned_cols=128  Identities=24%  Similarity=0.384  Sum_probs=124.3

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN-KNTALHY  301 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~-G~TpLh~  301 (353)
                      +..+..|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |+||||+
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~   84 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHD   84 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHH
Confidence            4557889999999999999999999999999999999999999999999 9999999999999999999999 9999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+.+++.+++++|+++|
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           85 AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999976

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=8.7e-28  Score=204.38  Aligned_cols=134  Identities=26%  Similarity=0.341  Sum_probs=127.6

Q ss_pred             CcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 018595          218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNT  297 (353)
Q Consensus       218 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~T  297 (353)
                      +.......+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus        25 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  104 (172)
T 3v30_A           25 GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGT  104 (172)
T ss_dssp             CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            33434666888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          298 ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       298 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++++
T Consensus       105 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A          105 PLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=4.8e-28  Score=198.60  Aligned_cols=126  Identities=33%  Similarity=0.446  Sum_probs=121.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      ...+.|+||+|+..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999976

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=3.4e-27  Score=200.59  Aligned_cols=129  Identities=34%  Similarity=0.451  Sum_probs=124.4

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.|+||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        41 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  120 (169)
T 2y1l_E           41 NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA  120 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|++.|
T Consensus       121 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          121 AMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=1.5e-27  Score=204.01  Aligned_cols=122  Identities=37%  Similarity=0.570  Sum_probs=119.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 018595          231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKEC  310 (353)
Q Consensus       231 t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~  310 (353)
                      +.|+.||..|+.++|++||+.|+|+|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+||..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          311 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       311 v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |++|+++|++++.+|.+|+||||+|+.+|+.+++++|+++|.
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga  127 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA  127 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999763

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.1e-27  Score=217.91  Aligned_cols=140  Identities=28%  Similarity=0.390  Sum_probs=128.2

Q ss_pred             hhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 018595          212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL  291 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~  291 (353)
                      ..+...|.++ +..+..|+||||+||..|+.++|++|++.|++++..+..|.||+|+|+..++.+++++|++.|++++.+
T Consensus        70 ~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~  148 (269)
T 4b93_B           70 AKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK  148 (269)
T ss_dssp             -----CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCC
Confidence            4455556554 556788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       292 d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |..|+||||+||..|+.++|++|+++|++++.++..|+||||+|+.+|+.++|++|+++|.
T Consensus       149 d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga  209 (269)
T 4b93_B          149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA  209 (269)
T ss_dssp             CTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999999999999999873

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.5e-27  Score=201.54  Aligned_cols=130  Identities=36%  Similarity=0.518  Sum_probs=122.3

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  115 (165)
T 3twr_A           36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA  115 (165)
T ss_dssp             CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            34467789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL  353 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~l  353 (353)
                      +..|+.+++++|+++|++++.+|..|+||||+|+. ++.+++++|+++|-|
T Consensus       116 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gAl  165 (165)
T 3twr_A          116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAAL  165 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC---
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcccC
Confidence            99999999999999999999999999999999877 899999999998754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=4.8e-27  Score=203.48  Aligned_cols=154  Identities=25%  Similarity=0.334  Sum_probs=136.9

Q ss_pred             CHHHHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 018595          181 GPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS  260 (353)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~  260 (353)
                      .+...+...++.++++.|.+.                +.+ ....+..|.||||+|+..|+.+++++|++.|++++.+|.
T Consensus        37 t~L~~A~~~g~~~~v~~Ll~~----------------~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   99 (192)
T 2rfm_A           37 TPLMVACMLGMENAIDKLVEN----------------FDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF   99 (192)
T ss_dssp             CHHHHHHHHTCGGGHHHHHHH----------------HCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             CHHHHHHHcCCHHHHHHHHHh----------------ccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            344445555666777666542                111 134567899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Q 018595          261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ  340 (353)
Q Consensus       261 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  340 (353)
                      .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+
T Consensus       100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          100 SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR  179 (192)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 018595          341 HDVLKLLEKDA  351 (353)
Q Consensus       341 ~~iv~~Ll~~~  351 (353)
                      .+++++|++++
T Consensus       180 ~~~v~~Ll~~~  190 (192)
T 2rfm_A          180 QEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999999864

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=4e-27  Score=197.94  Aligned_cols=128  Identities=28%  Similarity=0.374  Sum_probs=123.6

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.||||+|+. |+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        32 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  110 (162)
T 1ihb_A           32 NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA  110 (162)
T ss_dssp             TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            4457789999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          303 AGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus       111 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          111 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999998 6999999999999999999999999999987

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=4.7e-27  Score=188.43  Aligned_cols=125  Identities=42%  Similarity=0.602  Sum_probs=122.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 018595          228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR  307 (353)
Q Consensus       228 ~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~  307 (353)
                      +|.|+||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       308 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=7.1e-27  Score=197.76  Aligned_cols=129  Identities=27%  Similarity=0.385  Sum_probs=124.8

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  109 (167)
T 3v31_A           30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA  109 (167)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHH
Confidence            45577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++++
T Consensus       110 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          110 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999863

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=7.8e-27  Score=194.96  Aligned_cols=124  Identities=33%  Similarity=0.416  Sum_probs=120.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG  304 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~  304 (353)
                      .+..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  109 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            36779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Q 018595          305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  348 (353)
Q Consensus       305 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  348 (353)
                      .|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|.
T Consensus       110 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B          110 HNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             cCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence            99999999999999999999999999999999999999999983

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=9.9e-27  Score=194.47  Aligned_cols=126  Identities=21%  Similarity=0.355  Sum_probs=121.9

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.||||+ +..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        30 ~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (156)
T 1bd8_A           30 DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA  108 (156)
T ss_dssp             TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            4457789999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      +..|+.+++++|+++ ++++.+|..|.||||+|+.+|+.+++++|+++
T Consensus       109 ~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          109 VQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999 99999999999999999999999999999985

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=6.5e-27  Score=200.55  Aligned_cols=130  Identities=26%  Similarity=0.339  Sum_probs=125.9

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  112 (179)
T 3f6q_A           33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA  112 (179)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|.
T Consensus       113 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A          113 CFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999873

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=2e-27  Score=199.46  Aligned_cols=127  Identities=26%  Similarity=0.367  Sum_probs=121.1

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHHHH
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNT-ALHYAA  303 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~T-pLh~A~  303 (353)
                      .+..|.|+||+|+..|+.++|++|++.|++++.++..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            3677899999999999999999999999999999999999999985 99999999999999999999999999 999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          304 GYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       304 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus        87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga  135 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG  135 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-
T ss_pred             HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999873

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=1.5e-27  Score=195.62  Aligned_cols=128  Identities=31%  Similarity=0.448  Sum_probs=120.6

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 018595          224 EVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAA  303 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~  303 (353)
                      ..+..|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          304 GYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       304 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|.+++
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            999999999999999999999999999999999999999999888764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=7e-26  Score=200.08  Aligned_cols=130  Identities=26%  Similarity=0.380  Sum_probs=126.1

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        86 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  165 (223)
T 2f8y_A           86 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA  165 (223)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHH
Confidence            45577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +..|+.+++++|+++|++++.+|..|.||||+|+.+++.+++++|+++|.
T Consensus       166 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          166 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.7e-26  Score=199.98  Aligned_cols=130  Identities=25%  Similarity=0.338  Sum_probs=125.8

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      +..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            45588899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  158 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA  158 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999863

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=4.9e-26  Score=192.58  Aligned_cols=125  Identities=26%  Similarity=0.378  Sum_probs=121.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 018595          228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR  307 (353)
Q Consensus       228 ~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~  307 (353)
                      .|.|+||+|+..|+.+++++|++.|.+++.+|..|+||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       308 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  126 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA  126 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999763

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.94  E-value=7.9e-26  Score=201.14  Aligned_cols=130  Identities=29%  Similarity=0.330  Sum_probs=121.9

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC----
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADK-----DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK----  293 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~-----~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~----  293 (353)
                      ...+..|.||||+|+..|+.+++++|++.|+++     +..|..|+||||+||..|+.+++++|+++|++++..+.    
T Consensus        31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  110 (232)
T 2rfa_A           31 HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF  110 (232)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcce
Confidence            445788999999999999999999999999886     66788999999999999999999999999999998866    


Q ss_pred             ---------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHH----HHHHhcCC
Q 018595          294 ---------NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL----KLLEKDAF  352 (353)
Q Consensus       294 ---------~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv----~~Ll~~~~  352 (353)
                               .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++    ++|++++.
T Consensus       111 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~  182 (232)
T 2rfa_A          111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG  182 (232)
T ss_dssp             SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred             eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence                     799999999999999999999999999999999999999999999999988    99998763

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.94  E-value=9.5e-26  Score=200.61  Aligned_cols=128  Identities=24%  Similarity=0.292  Sum_probs=121.1

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-------------CCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 018595          224 EVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS-------------EGRTALHFACGYGEVKCAQILLEAGANVDA  290 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~-------------~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~  290 (353)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+.             .|+||||+|+..|+.+++++|+++|++++.
T Consensus        70 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  149 (232)
T 2rfa_A           70 SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA  149 (232)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             ccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            3466899999999999999999999999999988765             799999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCC------CCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          291 LDKNKNTALHYAAGYGRKECV----ALLLENGAAV------TLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       291 ~d~~G~TpLh~A~~~g~~~~v----~~Ll~~gad~------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|..|+||||+|+..|+.+++    ++|+++|+++      +.+|..|+||||+|+.+|+.+++++|++++
T Consensus       150 ~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999988    9999999998      589999999999999999999999999875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=9.5e-26  Score=204.05  Aligned_cols=129  Identities=26%  Similarity=0.381  Sum_probs=123.2

Q ss_pred             hhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       222 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      ....+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  196 (253)
T 1yyh_A          117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL  196 (253)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            35557889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+|+++|.+.
T Consensus       197 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             HHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999863

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=8.2e-26  Score=191.99  Aligned_cols=127  Identities=33%  Similarity=0.537  Sum_probs=121.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      ...+.++||+|+..|+.++|++|++.|++++.+|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++++.
T Consensus        91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  137 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA  137 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999863

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=2.2e-25  Score=193.68  Aligned_cols=129  Identities=27%  Similarity=0.347  Sum_probs=122.4

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAG-ANVDALDKNKNTALH  300 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll-~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g-adi~~~d~~G~TpLh  300 (353)
                      ...+..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||
T Consensus        66 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  145 (201)
T 3hra_A           66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI  145 (201)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence            445778999999999999999999999 566799999999999999999999999999999999 999999999999999


Q ss_pred             HHHHcCC-----HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          301 YAAGYGR-----KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       301 ~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|+..+.     .+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus       146 ~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999998     99999999999999999999999999999999999999999986

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=2.9e-25  Score=197.13  Aligned_cols=126  Identities=33%  Similarity=0.422  Sum_probs=75.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus        70 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  149 (231)
T 3aji_A           70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK  149 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            44555666666666666666666666666555555566666666666666666666666666655555566666666666


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus       150 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  195 (231)
T 3aji_A          150 GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG  195 (231)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            6666666666666666666666666666666666666666665554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=2.8e-25  Score=196.63  Aligned_cols=127  Identities=31%  Similarity=0.353  Sum_probs=121.9

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAAG--ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g--~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      .+..|.||||+|+..|+.+++++|++.|  ++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  147 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA  147 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            5788999999999999999999999998  88889999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-hcC
Q 018595          303 AGYGRKECVALLLENG-AAVTLQNMDGKTPIDVAKLNSQHDVLKLLE-KDA  351 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~~  351 (353)
                      +..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+ ++|
T Consensus       148 ~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g  198 (228)
T 2dzn_A          148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG  198 (228)
T ss_dssp             HHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence            9999999999999999 999999999999999999999999999999 655

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=3.9e-26  Score=206.50  Aligned_cols=126  Identities=23%  Similarity=0.255  Sum_probs=121.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-------------CCcHHHHHHhcCCHHHHHHHHH---cCCCCC
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSE-------------GRTALHFACGYGEVKCAQILLE---AGANVD  289 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~-------------g~t~Lh~Aa~~g~~~~v~~Ll~---~gadi~  289 (353)
                      +..|.||||+|+..|+.+++++|++.|++++.++..             |+||||+||..|+.++|++|++   .|++++
T Consensus        87 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n  166 (256)
T 2etb_A           87 FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE  166 (256)
T ss_dssp             TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT
T ss_pred             cccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC
Confidence            467999999999999999999999999999998876             9999999999999999999999   999999


Q ss_pred             CCCCCCCcHHHHHHH--cCCHH-------HHHHHHHCCCCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          290 ALDKNKNTALHYAAG--YGRKE-------CVALLLENGAAV-------TLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       290 ~~d~~G~TpLh~A~~--~g~~~-------~v~~Ll~~gad~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      .+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+.+|+.+++++|++++
T Consensus       167 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            999999999999999  88888       999999999999       999999999999999999999999999975

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=4.2e-26  Score=206.61  Aligned_cols=126  Identities=20%  Similarity=0.216  Sum_probs=120.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------------CCCCcHHHHHHhcCCHHHHHHHHH---cCCCC
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEED--------------SEGRTALHFACGYGEVKCAQILLE---AGANV  288 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d--------------~~g~t~Lh~Aa~~g~~~~v~~Ll~---~gadi  288 (353)
                      +..|.||||+|+..|+.++|++|++.|++++..+              ..|+||||+|+..|+.++|++|++   .|+++
T Consensus        90 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~  169 (260)
T 3jxi_A           90 YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL  169 (260)
T ss_dssp             SEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC
Confidence            4479999999999999999999999999999988              689999999999999999999999   99999


Q ss_pred             CCCCCCCCcHHHHHHHcCC---------HHHHHHHHHCCCCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          289 DALDKNKNTALHYAAGYGR---------KECVALLLENGAAV-------TLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       289 ~~~d~~G~TpLh~A~~~g~---------~~~v~~Ll~~gad~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|+||||+|+.+|+.+++++|++++
T Consensus       170 ~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          170 RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999999999999888         79999999999999       789999999999999999999999999975

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.93  E-value=3.3e-25  Score=196.81  Aligned_cols=131  Identities=27%  Similarity=0.389  Sum_probs=126.3

Q ss_pred             hhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       222 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      ....+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  112 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY  112 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|++++.
T Consensus       113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  163 (231)
T 3aji_A          113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA  163 (231)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999998763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=6.9e-27  Score=202.95  Aligned_cols=124  Identities=20%  Similarity=0.210  Sum_probs=115.6

Q ss_pred             CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCC------HHHHHHHHHcCCCCCCCCCCCC
Q 018595          227 NEDESIVHHTASVGDA----EGLKNALAAGADKDEEDSEGRTALHFACGYGE------VKCAQILLEAGANVDALDKNKN  296 (353)
Q Consensus       227 ~~g~t~Lh~Aa~~g~~----~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~------~~~v~~Ll~~gadi~~~d~~G~  296 (353)
                      ..|+||||+|+..|+.    +++++|++.|++++.+|..|+||||+|+..++      .+++++|+++|+++|.+|..|+
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            5589999999999975    58999999999999999999999999999987      6899999999999999999999


Q ss_pred             -cHHHHHHHcCC-----HHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          297 -TALHYAAGYGR-----KECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       297 -TpLh~A~~~g~-----~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                       ||||+|+..+.     .+++++|++ +|++++.+|..|+||||+|+..|+.++|++|++.
T Consensus       116 ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             BCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             chHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence             99999999553     579999999 9999999999999999999999999999999863

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=1.6e-25  Score=204.25  Aligned_cols=130  Identities=23%  Similarity=0.291  Sum_probs=120.4

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----------------------------------------------C
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGAD-----------------------------------------------K  255 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d-----------------------------------------------~  255 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++                                               +
T Consensus        72 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (282)
T 1oy3_D           72 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL  151 (282)
T ss_dssp             SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT
T ss_pred             CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcC
Confidence            34567899999999999999999999998755                                               6


Q ss_pred             CCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Q 018595          256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN-KNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV  334 (353)
Q Consensus       256 ~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~-G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~  334 (353)
                      +.++..|+||||+|+..|+.++|++|+++|++++.++.. |+||||+|+.+|+.++|++|+++|++++.+|..|+||||+
T Consensus       152 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  231 (282)
T 1oy3_D          152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS  231 (282)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHH
Confidence            677889999999999999999999999999999999865 9999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCC
Q 018595          335 AKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       335 A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+.+|+.+++++|+++|.
T Consensus       232 A~~~~~~~~v~~Ll~~ga  249 (282)
T 1oy3_D          232 ALLRPNPILARLLRAHGA  249 (282)
T ss_dssp             HHTSSCHHHHHHHHHTTC
T ss_pred             HHHcCCcHHHHHHHHcCC
Confidence            999999999999999874

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=2.2e-25  Score=201.71  Aligned_cols=155  Identities=25%  Similarity=0.286  Sum_probs=136.7

Q ss_pred             CHHHHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCC
Q 018595          181 GPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA-DKDEED  259 (353)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~-d~~~~d  259 (353)
                      .+...+...++.++++.|.+                .+.+. ...+..|.||||+|+..|+.+++++|++.|. +++..+
T Consensus        59 t~L~~A~~~g~~~~v~~Ll~----------------~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  121 (253)
T 1yyh_A           59 TALHLAARYSRSDAAKRLLE----------------ASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM  121 (253)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH----------------TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC
T ss_pred             cHHHHHHHcCCHHHHHHHHH----------------cCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence            34445555556666665543                22222 3457789999999999999999999999987 899999


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Q 018595          260 SEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  339 (353)
Q Consensus       260 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g  339 (353)
                      ..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|
T Consensus       122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~  201 (253)
T 1yyh_A          122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG  201 (253)
T ss_dssp             TTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCC
Q 018595          340 QHDVLKLLEKDAF  352 (353)
Q Consensus       340 ~~~iv~~Ll~~~~  352 (353)
                      +.+++++|+++|.
T Consensus       202 ~~~~v~~Ll~~ga  214 (253)
T 1yyh_A          202 SYETAKVLLDHFA  214 (253)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            9999999999863

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=5.5e-25  Score=191.17  Aligned_cols=130  Identities=26%  Similarity=0.308  Sum_probs=123.7

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL-EAGANVDALDKNKNTALHY  301 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll-~~gadi~~~d~~G~TpLh~  301 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+ ..+++++..|..|.||||+
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  112 (201)
T 3hra_A           33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP  112 (201)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHH
Confidence            445778999999999999999999999999999999999999999999999999999999 6678999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCc-----HHHHHHHHhcCC
Q 018595          302 AAGYGRKECVALLLENG-AAVTLQNMDGKTPIDVAKLNSQ-----HDVLKLLEKDAF  352 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~-----~~iv~~Ll~~~~  352 (353)
                      |+..|+.+++++|+++| ++++.+|..|+||||+|+..++     .+++++|+++|.
T Consensus       113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga  169 (201)
T 3hra_A          113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA  169 (201)
T ss_dssp             HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCC
Confidence            99999999999999999 9999999999999999999998     999999999863

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=3.4e-26  Score=184.11  Aligned_cols=119  Identities=31%  Similarity=0.464  Sum_probs=109.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      +..|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL  347 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~L  347 (353)
                      |+.+++++|+++|++++.+|..|+||||+|.   ..++.++|
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~~ll  122 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATD---NQAIKALL  122 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC---CHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC---CHHHHHHh
Confidence            9999999999999999999999999999994   44444443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=3.1e-25  Score=202.26  Aligned_cols=131  Identities=30%  Similarity=0.401  Sum_probs=123.0

Q ss_pred             hhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC--------------
Q 018595          222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN--------------  287 (353)
Q Consensus       222 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad--------------  287 (353)
                      ....+..|.||||+|+..|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|+++|++              
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  117 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ  117 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhccc
Confidence            355678899999999999999999999999999999999999999999999999999999998765              


Q ss_pred             ---------------------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-CCCHHH
Q 018595          288 ---------------------------------VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMD-GKTPID  333 (353)
Q Consensus       288 ---------------------------------i~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~TpL~  333 (353)
                                                       ++.+|..|+||||+|+..|+.++|++|+++|++++..+.. |+||||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~  197 (282)
T 1oy3_D          118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH  197 (282)
T ss_dssp             --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             ccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence                                             6778899999999999999999999999999999999865 999999


Q ss_pred             HHHHcCcHHHHHHHHhcCC
Q 018595          334 VAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       334 ~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +|+.+|+.+++++|+++|.
T Consensus       198 ~A~~~~~~~~v~~Ll~~ga  216 (282)
T 1oy3_D          198 LAVEAQAASVLELLLKAGA  216 (282)
T ss_dssp             HHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=1.1e-25  Score=205.55  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=121.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--------------CCCcHHHHHHhcCCHHHHHHHHH---cCCC
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS--------------EGRTALHFACGYGEVKCAQILLE---AGAN  287 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~--------------~g~t~Lh~Aa~~g~~~~v~~Ll~---~gad  287 (353)
                      .+..|.||||+|+..|+.++|++|++.|++++.++.              .|+||||+|+..|+.++|++|++   .|++
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad  176 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD  176 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC
Confidence            356899999999999999999999999999999886              79999999999999999999999   9999


Q ss_pred             CCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHCCCCCC-------CcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          288 VDALDKNKNTALHYAAGYGR---------KECVALLLENGAAVT-------LQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       288 i~~~d~~G~TpLh~A~~~g~---------~~~v~~Ll~~gad~~-------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ++.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+.+|+.+++++|+++|
T Consensus       177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  256 (273)
T 2pnn_A          177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE  256 (273)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCC
Confidence            99999999999999999998         899999999999996       58999999999999999999999999976


Q ss_pred             C
Q 018595          352 F  352 (353)
Q Consensus       352 ~  352 (353)
                      .
T Consensus       257 a  257 (273)
T 2pnn_A          257 I  257 (273)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.93  E-value=7e-25  Score=193.64  Aligned_cols=130  Identities=25%  Similarity=0.285  Sum_probs=124.3

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGA-DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~-d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      ...+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        52 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  131 (223)
T 2f8y_A           52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW  131 (223)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHH
Confidence            3457789999999999999999999999987 888999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++++.
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  182 (223)
T 2f8y_A          132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA  182 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999999863

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.93  E-value=5.2e-25  Score=194.91  Aligned_cols=134  Identities=22%  Similarity=0.301  Sum_probs=124.7

Q ss_pred             CcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHhcCCHHHHHHHHHcC--CCCCCCC
Q 018595          218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG--ADKDE-EDSEGRTALHFACGYGEVKCAQILLEAG--ANVDALD  292 (353)
Q Consensus       218 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g--~d~~~-~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g--adi~~~d  292 (353)
                      +++.....+..|.||||+|+..|+.+++++|++.|  .+++. .+..|+||||+|+..|+.+++++|+++|  ++++..|
T Consensus        25 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  104 (228)
T 2dzn_A           25 KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT  104 (228)
T ss_dssp             CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCC
T ss_pred             CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCC
Confidence            33444556888999999999999999999999999  55555 7889999999999999999999999999  8999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       293 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++++
T Consensus       105 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A          105 NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  163 (228)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             cCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999987

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=5.2e-25  Score=203.10  Aligned_cols=130  Identities=26%  Similarity=0.399  Sum_probs=121.0

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC---------
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK---------  293 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~---------  293 (353)
                      +..+..|.||||+||..|+.++|++|++.|++++..|..|+||||+|+..|+.++|++|+++|++++..|.         
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  146 (299)
T 1s70_B           67 NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA  146 (299)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            44577899999999999999999999999999999999999999999999999999999999999876653         


Q ss_pred             ---------------------------------------------------CCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q 018595          294 ---------------------------------------------------NKNTALHYAAGYGRKECVALLLENGAAVT  322 (353)
Q Consensus       294 ---------------------------------------------------~G~TpLh~A~~~g~~~~v~~Ll~~gad~~  322 (353)
                                                                         .|.||||+|+..|+.+++++|+++|++++
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~  226 (299)
T 1s70_B          147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN  226 (299)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence                                                               47788999999999999999999999999


Q ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          323 LQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       323 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .+|..|+||||+|+.+|+.+++++|+++|.
T Consensus       227 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  256 (299)
T 1s70_B          227 IKDYDGWTPLHAAAHWGKEEACRILVENLC  256 (299)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CcCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999874

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=6e-26  Score=208.20  Aligned_cols=150  Identities=28%  Similarity=0.392  Sum_probs=129.8

Q ss_pred             CHHHHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 018595          181 GPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS  260 (353)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~  260 (353)
                      .+..++...++.++++.|.+                .+.+. ...+..|.||+|+|+..++.+++++|++.|++++.+|.
T Consensus        88 TpLh~A~~~g~~~~v~~Ll~----------------~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~  150 (269)
T 4b93_B           88 SPLHVAALHGRADLIPLLLK----------------HGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL  150 (269)
T ss_dssp             CHHHHHHHTTCTTHHHHHHH----------------TTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CHHHHHHHcCcHHHHHHHHh----------------cCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCC
Confidence            45556666667777766643                23332 34567899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Q 018595          261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ  340 (353)
Q Consensus       261 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  340 (353)
                      .|+||||+||..|+.++|++|+++|+++|.+|..|+||||+||..|+.++|++|+++|++++.+|.+|+||||+|+.+++
T Consensus       151 ~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          151 SGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             TCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998775


Q ss_pred             -HHHHHHH
Q 018595          341 -HDVLKLL  347 (353)
Q Consensus       341 -~~iv~~L  347 (353)
                       .+++++|
T Consensus       231 i~~lL~~l  238 (269)
T 4b93_B          231 IMELLQVV  238 (269)
T ss_dssp             HHHHTTC-
T ss_pred             HHHHHHHH
Confidence             2344333

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=1e-25  Score=189.24  Aligned_cols=124  Identities=28%  Similarity=0.335  Sum_probs=119.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 018595          228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR  307 (353)
Q Consensus       228 ~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~  307 (353)
                      ...|+||+|+..|+.+++++|++.|++++..+..|+||||+|+. |+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45799999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       308 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++++.
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  127 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  127 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999998763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=2e-25  Score=186.29  Aligned_cols=123  Identities=31%  Similarity=0.408  Sum_probs=118.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 018595          229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK  308 (353)
Q Consensus       229 g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~  308 (353)
                      ..++||+|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            3589999999999999999999999886 588999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       309 ~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  124 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999863

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=1.2e-25  Score=200.78  Aligned_cols=130  Identities=23%  Similarity=0.283  Sum_probs=122.3

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CC
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGAD------KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK-NK  295 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d------~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~-~G  295 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++      ++..+..|+||||+|+..|+.++|++|+++|++++.++. .|
T Consensus        72 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g  151 (236)
T 1ikn_D           72 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG  151 (236)
T ss_dssp             CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            34577899999999999999999999999876      456788999999999999999999999999999999998 99


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          296 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       296 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus       152 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          152 RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence            999999999999999999999999999999999999999999999999999999874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=3.8e-25  Score=203.35  Aligned_cols=135  Identities=27%  Similarity=0.349  Sum_probs=125.2

Q ss_pred             cCcchhhhcCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 018595          217 AGADEAEEVGNEDESIVHHTA-----SVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL  291 (353)
Q Consensus       217 ~~~~~~~~~~~~g~t~Lh~Aa-----~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~  291 (353)
                      .+.......+..|.||||+|+     ..++.+++++|++.|.+.+..+..|+||||+|+..|+.++|++|+++|++++.+
T Consensus       133 ~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~  212 (276)
T 4hbd_A          133 SGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ  212 (276)
T ss_dssp             TSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence            343334566788999999999     568899999999999999888999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          292 DKNKNTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       292 d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |..|+||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+.+|+.+++++|+++.
T Consensus       213 d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          213 DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999999999999 89999999999999999999999999999999875

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=3.1e-25  Score=187.19  Aligned_cols=127  Identities=31%  Similarity=0.462  Sum_probs=120.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG  304 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~  304 (353)
                      +..+.|+||.|+..|+.+++++|++. +.+++..+..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            55678999999999999999999984 56778888999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       305 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  132 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA  132 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=3.6e-25  Score=188.10  Aligned_cols=124  Identities=29%  Similarity=0.446  Sum_probs=118.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 018595          229 DESIVHHTASVGDAEGLKNALAAGAD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR  307 (353)
Q Consensus       229 g~t~Lh~Aa~~g~~~~v~~Ll~~g~d-~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~  307 (353)
                      +.|+||+|+..|+.+++++|++.+.+ ++.++..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            46899999999999999999999977 78889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       308 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  126 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA  126 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999863

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=3.7e-25  Score=210.36  Aligned_cols=127  Identities=17%  Similarity=0.248  Sum_probs=123.6

Q ss_pred             cCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC-----CCCCCCCCCc
Q 018595          225 VGNEDESIVHHTASVG--DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN-----VDALDKNKNT  297 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g--~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad-----i~~~d~~G~T  297 (353)
                      .+..|.||||+|+..|  +.++|++|++.|++++.+|..|+||||+||..|+.++|++|+++|++     ++..|..|+|
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t  213 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS  213 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc
Confidence            5677999999999999  99999999999999999999999999999999999999999999999     9999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          298 ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       298 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|++++
T Consensus       214 ~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  267 (364)
T 3ljn_A          214 HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT  267 (364)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999975

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=6.7e-25  Score=187.97  Aligned_cols=126  Identities=25%  Similarity=0.387  Sum_probs=118.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          227 NEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       227 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      ..+.++||.||..|+.++|++|++. +.+++..+..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            3467899999999999999999998 678999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|.
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  129 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA  129 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999874

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=8.5e-26  Score=202.27  Aligned_cols=129  Identities=26%  Similarity=0.283  Sum_probs=123.2

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..+.|+||+|+..|+.++|++|++.|++++.+|..|+||||+||..|+.++|++|++.|++++.+|..|+||||+|
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A   94 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA   94 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHH--HHcCcHHHHHHHHhcC
Q 018595          303 AGYGRKECVALLLENGAAVTLQN-MDGKTPIDVA--KLNSQHDVLKLLEKDA  351 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A--~~~g~~~iv~~Ll~~~  351 (353)
                      +..|+.+++++|+++|++++.++ ..|+||||+|  +..|+.+++++|+++|
T Consensus        95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g  146 (229)
T 2vge_A           95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE  146 (229)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC
Confidence            99999999999999999999987 6999999999  9999999999999864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=5.5e-26  Score=201.49  Aligned_cols=130  Identities=28%  Similarity=0.354  Sum_probs=118.9

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA-GANVDALDKNKNTALHY  301 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~-gadi~~~d~~G~TpLh~  301 (353)
                      ...+..|.|+||+||..|+.++|++|++.|++++.+|..|+||||+||..|+.++|++|++. |++++.+|..|+||||+
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            34466789999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+..|+.++|++|+++|++++.+|..|+||||+|+..++.++++.|++++.
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            999999999999999999999999999999999999999999999988763

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.92  E-value=2.5e-24  Score=191.88  Aligned_cols=126  Identities=27%  Similarity=0.359  Sum_probs=76.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHH
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGA----DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALH  300 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~----d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d-~~G~TpLh  300 (353)
                      +..|.||||+|+..|+.+++++|++.+.    +++..+..|+||||+|+..|+.+++++|++.|++++..+ ..|+||||
T Consensus        76 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~  155 (241)
T 1k1a_A           76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI  155 (241)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHH
Confidence            4455666666666666666666666554    555555566666666666666666666666666666555 45666666


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          301 YAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       301 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus       156 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  206 (241)
T 1k1a_A          156 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG  206 (241)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            666666666666666666666666666666666666666666666666554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=1e-25  Score=202.47  Aligned_cols=126  Identities=24%  Similarity=0.258  Sum_probs=119.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      ...+.|+||+|+..|+.++|++|++.|++++.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+.+
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~  113 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC  113 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCC-CHHHHH--HHcCcHHHHHHHHhcC
Q 018595          306 GRKECVALLLENGAAVTLQNMDGK-TPIDVA--KLNSQHDVLKLLEKDA  351 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~-TpL~~A--~~~g~~~iv~~Ll~~~  351 (353)
                      |+.+++++|+++|++++.++..|. ||||+|  +..|+.+++++|++++
T Consensus       114 ~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~  162 (239)
T 1ycs_B          114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  162 (239)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence            999999999999999999998887 999999  7889999999999854

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=4.3e-25  Score=190.22  Aligned_cols=126  Identities=38%  Similarity=0.546  Sum_probs=118.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAG  304 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d-~~G~TpLh~A~~  304 (353)
                      +..|.||||+|+..|+.+++++|++ |++++.+|..|+||||+||..|+.+++++|+++|++++.+| ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4568999999999999999999999 99999999999999999999999999999999999999998 889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc----------------CcHHHHHHHHhcCC
Q 018595          305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN----------------SQHDVLKLLEKDAF  352 (353)
Q Consensus       305 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~----------------g~~~iv~~Ll~~~~  352 (353)
                      .|+.+++++|+++|++++.+|.+|+||||+|+..                |+.+++++|.++-|
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~~~  183 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF  183 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHhhC
Confidence            9999999999999999999999999999988765                67889999887654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=5.3e-25  Score=199.05  Aligned_cols=127  Identities=21%  Similarity=0.270  Sum_probs=119.0

Q ss_pred             cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCC-----------CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 018595          225 VGNEDESIVHHTASV---GDAEGLKNALAAGADKDE-----------EDSEGRTALHFACGYGEVKCAQILLEAGANVDA  290 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~g~d~~~-----------~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~  290 (353)
                      .+..|.||||+|+..   |+.++|++|++.|++++.           .|..|+||||+||..|+.++|++|+++|++++.
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  118 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL  118 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            578899999999999   999999999999987763           347899999999999999999999999999999


Q ss_pred             CCCC-------------CCcHHHHHHHcCCHHHHHHHHH---CCCCCCCcCCCCCCHHHHHHH--cCcHH-------HHH
Q 018595          291 LDKN-------------KNTALHYAAGYGRKECVALLLE---NGAAVTLQNMDGKTPIDVAKL--NSQHD-------VLK  345 (353)
Q Consensus       291 ~d~~-------------G~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~d~~g~TpL~~A~~--~g~~~-------iv~  345 (353)
                      +|..             |+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  +++.+       +++
T Consensus       119 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~  198 (256)
T 2etb_A          119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD  198 (256)
T ss_dssp             CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHH
Confidence            9886             9999999999999999999999   999999999999999999999  88888       999


Q ss_pred             HHHhcC
Q 018595          346 LLEKDA  351 (353)
Q Consensus       346 ~Ll~~~  351 (353)
                      +|+++|
T Consensus       199 ~Ll~~g  204 (256)
T 2etb_A          199 GLLQMG  204 (256)
T ss_dssp             HHHHHH
T ss_pred             HHHHcC
Confidence            999864

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=4e-24  Score=190.48  Aligned_cols=121  Identities=31%  Similarity=0.408  Sum_probs=73.7

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus       105 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  184 (237)
T 3b7b_A          105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIA  184 (237)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            34445556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV  343 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~i  343 (353)
                      +..|+.+++++|+++|++++.+|..|+||||+|+.+++...
T Consensus       185 ~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~  225 (237)
T 3b7b_A          185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS  225 (237)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred             HHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666665533

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.92  E-value=6.1e-25  Score=196.21  Aligned_cols=130  Identities=28%  Similarity=0.344  Sum_probs=123.5

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC------CCCCCCCCC
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN------VDALDKNKN  296 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad------i~~~d~~G~  296 (353)
                      ...+..|.||||+|+..|+.++|++|++.|++++.++..|+||||+||..|+.+++++|++.|++      ++..+..|+
T Consensus        39 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  118 (236)
T 1ikn_D           39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  118 (236)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCC
Confidence            45577899999999999999999999999999999999999999999999999999999999976      577888999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          297 TALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       297 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ||||+|+..|+.+++++|+++|++++.++. .|+||||+|+.+|+.+++++|+++|.
T Consensus       119 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  175 (236)
T 1ikn_D          119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA  175 (236)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999998 99999999999999999999999863

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=4.8e-24  Score=189.97  Aligned_cols=140  Identities=25%  Similarity=0.368  Sum_probs=125.7

Q ss_pred             hhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 018595          212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG-ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA  290 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g-~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~  290 (353)
                      ..+...+.+. ...+..|.||||+|+..|+.+++++|++.| .+++..+..|+||||+|+..|+.+++++|++.|++++.
T Consensus        61 ~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  139 (237)
T 3b7b_A           61 KYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI  139 (237)
T ss_dssp             HHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            4444444443 445678899999999999999999999998 88998999999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       291 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|.
T Consensus       140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  201 (237)
T 3b7b_A          140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS  201 (237)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999998864

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.92  E-value=4.5e-24  Score=196.82  Aligned_cols=126  Identities=23%  Similarity=0.312  Sum_probs=83.6

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 018595          224 EVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAA  303 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~  303 (353)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+ .|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+
T Consensus       120 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~  198 (285)
T 3d9h_A          120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC  198 (285)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            345556666666666666666666666666665432 3666666666666666666666666666666666667777777


Q ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          304 GYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       304 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ..|+.+++++|+++|++++. |..|+||||+|+.+|+.+++++|+++|
T Consensus       199 ~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g  245 (285)
T 3d9h_A          199 ENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFG  245 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            77777777777766666663 666667777777777777777766655

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.92  E-value=7.3e-24  Score=188.91  Aligned_cols=130  Identities=28%  Similarity=0.367  Sum_probs=124.3

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCCcH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA----NVDALDKNKNTA  298 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga----di~~~d~~G~Tp  298 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.++    +++..|..|+||
T Consensus        40 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~  119 (241)
T 1k1a_A           40 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA  119 (241)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH
T ss_pred             CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcH
Confidence            4457789999999999999999999999999999999999999999999999999999999987    899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          299 LHYAAGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       299 Lh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.+|+.+++++|+++|.
T Consensus       120 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  174 (241)
T 1k1a_A          120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA  174 (241)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999 899999999999999999999999864

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=1.5e-24  Score=181.12  Aligned_cols=121  Identities=26%  Similarity=0.365  Sum_probs=116.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 018595          229 DESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR  307 (353)
Q Consensus       229 g~t~Lh~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~  307 (353)
                      +.|+||+|+..|+.+++++|++. +.+++..+..|+||||+ |..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            46899999999999999999998 45899999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       308 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      .+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999976

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.92  E-value=6.7e-24  Score=199.02  Aligned_cols=139  Identities=27%  Similarity=0.259  Sum_probs=107.0

Q ss_pred             hhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC---------------------------------
Q 018595          213 SADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEED---------------------------------  259 (353)
Q Consensus       213 ~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d---------------------------------  259 (353)
                      .+...+.+. ...+..|.||||+|+..|+.+++++|+++|++++..+                                 
T Consensus       109 ~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  187 (351)
T 3utm_A          109 LLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR  187 (351)
T ss_dssp             HHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHH
Confidence            333444433 3345566677777777777777777777766655432                                 


Q ss_pred             ---------------------CCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 018595          260 ---------------------SEGRTALHFACGY---GEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL  315 (353)
Q Consensus       260 ---------------------~~g~t~Lh~Aa~~---g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll  315 (353)
                                           ..|.||||+|+..   +..+++++|++.|++++.+|..|+||||+|+.+|+.+++++|+
T Consensus       188 ~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  267 (351)
T 3utm_A          188 EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH  267 (351)
T ss_dssp             TTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             hccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                                 3455666666666   4467777777778888888999999999999999999999999


Q ss_pred             HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          316 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       316 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ++|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus       268 ~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  304 (351)
T 3utm_A          268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS  304 (351)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999863

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.92  E-value=8.2e-25  Score=201.90  Aligned_cols=126  Identities=22%  Similarity=0.241  Sum_probs=77.9

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 018595          224 EVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAA  303 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~  303 (353)
                      ..+..|.||||+|+..|+.++|++|++.|++++..+  |+||||+||..|+.++|++|+++|++++.+|..|+||||+|+
T Consensus        26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~  103 (285)
T 3kea_A           26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAV  103 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH
Confidence            335556666666666666666666666666655552  566666666666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCC-CCHHHHHHHcCcHHHHHHHHhcC
Q 018595          304 GYGRKECVALLLENGAAVTLQNMDG-KTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       304 ~~g~~~~v~~Ll~~gad~~~~d~~g-~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ..|+.+++++|+++|++++.++..| .||||+|+.+|+.+++++|++++
T Consensus       104 ~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g  152 (285)
T 3kea_A          104 DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  152 (285)
T ss_dssp             HTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            6666666666666666666666666 46666666666666666666554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=6.3e-25  Score=198.25  Aligned_cols=124  Identities=38%  Similarity=0.538  Sum_probs=118.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAG  304 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d-~~G~TpLh~A~~  304 (353)
                      +..|.||||+|+..|+.++|++|++ |++++.+|..|+||||+||..|+.++|++|+++|++++.+| ..|+||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            3568999999999999999999999 99999999999999999999999999999999999999998 789999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----------------HcCcHHHHHHHHhc
Q 018595          305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAK----------------LNSQHDVLKLLEKD  350 (353)
Q Consensus       305 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~----------------~~g~~~iv~~Ll~~  350 (353)
                      +|+.++|++|+++|++++.+|..|+||||+|+                ..|+.+++++|+++
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            99999999999999999999999999999887                66889999999875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=1.1e-23  Score=191.63  Aligned_cols=133  Identities=27%  Similarity=0.332  Sum_probs=124.7

Q ss_pred             CcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 018595          218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNT  297 (353)
Q Consensus       218 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~T  297 (353)
                      +.+.....+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|+|
T Consensus        28 g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  107 (285)
T 1wdy_A           28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT  107 (285)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB
T ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCC
Confidence            34443344677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCc----------CCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          298 ALHYAAGYGRKECVALLLENGAAVTLQ----------NMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       298 pLh~A~~~g~~~~v~~Ll~~gad~~~~----------d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      |||+|+..|+.+++++|+++|++++..          +..|.||||+|+.+|+.+++++|+++
T Consensus       108 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  170 (285)
T 1wdy_A          108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  170 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999987          78899999999999999999999986

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=7.6e-24  Score=206.03  Aligned_cols=126  Identities=29%  Similarity=0.401  Sum_probs=63.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+
T Consensus       242 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  321 (437)
T 1n11_A          242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY  321 (437)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHS
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHc
Confidence            33444555555555555555555555555444444555555555555555555555555555555454555555555555


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |+.++|++|+++|++++.+|..|+||||+|+.+|+.++|++|+++|
T Consensus       322 g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  367 (437)
T 1n11_A          322 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG  367 (437)
T ss_dssp             SCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence            5555555555555555555555555555555555555555554443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=1.7e-23  Score=190.41  Aligned_cols=128  Identities=27%  Similarity=0.279  Sum_probs=123.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCCcHH
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGE----VKCAQILLEAGANVDALDKNKNTAL  299 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~t~Lh~Aa~~g~----~~~v~~Ll~~gadi~~~d~~G~TpL  299 (353)
                      .+..|.|+||+|+..|+.+++++|++. |++++..+..|+||||+|+..++    .+++++|+++|++++.+|..|+|||
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L  223 (285)
T 1wdy_A          144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  223 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            367899999999999999999999998 99999999999999999999999    9999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          300 HYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       300 h~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus       224 ~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             HHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence            99999999999999999 899999999999999999999999999999999873

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=2.5e-24  Score=194.84  Aligned_cols=126  Identities=21%  Similarity=0.208  Sum_probs=116.1

Q ss_pred             CCCCCcHHHHHH---HcCCHHHHHHHHHcCCC-----------CCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 018595          226 GNEDESIVHHTA---SVGDAEGLKNALAAGAD-----------KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL  291 (353)
Q Consensus       226 ~~~g~t~Lh~Aa---~~g~~~~v~~Ll~~g~d-----------~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~  291 (353)
                      +..|.||||+|+   ..|+.+++++|++.|++           ++..|..|+||||+||..|+.++|++|+++|++++.+
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  122 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ  122 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc
Confidence            477999999999   67999999999998744           4455669999999999999999999999999999999


Q ss_pred             C--------------CCCCcHHHHHHHcCCHHHHHHHHH---CCCCCCCcCCCCCCHHHHHHHcCc---------HHHHH
Q 018595          292 D--------------KNKNTALHYAAGYGRKECVALLLE---NGAAVTLQNMDGKTPIDVAKLNSQ---------HDVLK  345 (353)
Q Consensus       292 d--------------~~G~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~d~~g~TpL~~A~~~g~---------~~iv~  345 (353)
                      +              ..|+||||+|+..|+.++|++|++   +|++++.+|..|+||||+|+..++         .++++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~  202 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD  202 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence            8              689999999999999999999999   999999999999999999998887         79999


Q ss_pred             HHHhcC
Q 018595          346 LLEKDA  351 (353)
Q Consensus       346 ~Ll~~~  351 (353)
                      +|+++|
T Consensus       203 ~Ll~~g  208 (260)
T 3jxi_A          203 LLLIKC  208 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999874

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.91  E-value=4.5e-24  Score=202.89  Aligned_cols=125  Identities=22%  Similarity=0.344  Sum_probs=112.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc----CCCCCC-----------------CCCCCCcHHHHHHhcC--CHHHHHHHHHc
Q 018595          228 EDESIVHHTASVGDAEGLKNALAA----GADKDE-----------------EDSEGRTALHFACGYG--EVKCAQILLEA  284 (353)
Q Consensus       228 ~g~t~Lh~Aa~~g~~~~v~~Ll~~----g~d~~~-----------------~d~~g~t~Lh~Aa~~g--~~~~v~~Ll~~  284 (353)
                      .|.||||+|+..|+.++|++|++.    |++++.                 .+..|.||||+|+..|  +.++|++|+++
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            577777777777777777777777    666555                 7788999999999999  99999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          285 GANVDALDKNKNTALHYAAGYGRKECVALLLENGAA-----VTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       285 gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-----~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |++++.+|..|+||||+|+..|+.++|++|+++|++     ++..|..|+||||+|+.+|+.++|++|+++|.
T Consensus       163 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  235 (364)
T 3ljn_A          163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI  235 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999998     99999999999999999999999999999763

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.91  E-value=3.2e-24  Score=197.14  Aligned_cols=129  Identities=20%  Similarity=0.277  Sum_probs=123.4

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH-----hcCCHHHHHHHHHcCCCCCCCCCCCC
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGA-DKDEEDSEGRTALHFAC-----GYGEVKCAQILLEAGANVDALDKNKN  296 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~-d~~~~d~~g~t~Lh~Aa-----~~g~~~~v~~Ll~~gadi~~~d~~G~  296 (353)
                      +..+..|.||||+|+..|+.++|++|++.|+ +++..+..|+||||+|+     ..++.+++++|++.|.+++..|..|+
T Consensus       105 n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~  184 (276)
T 4hbd_A          105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQ  184 (276)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCC
T ss_pred             cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCC
Confidence            4558889999999999999999999999998 99999999999999999     66889999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh-cC
Q 018595          297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK-DA  351 (353)
Q Consensus       297 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~~  351 (353)
                      ||||+|+.+|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|++ +|
T Consensus       185 tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  240 (276)
T 4hbd_A          185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS  240 (276)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999998 54

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.91  E-value=1.8e-23  Score=196.15  Aligned_cols=137  Identities=31%  Similarity=0.354  Sum_probs=113.8

Q ss_pred             hhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC--
Q 018595          215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD--  292 (353)
Q Consensus       215 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d--  292 (353)
                      ...+.+. ...+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++..+  
T Consensus        78 l~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  156 (351)
T 3utm_A           78 LQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH  156 (351)
T ss_dssp             HHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence            3444443 4456778888888888888888888888888888888888888888888888888888888888876544  


Q ss_pred             ----------------------------------------------------CCCCcHHHHHHHc---CCHHHHHHHHHC
Q 018595          293 ----------------------------------------------------KNKNTALHYAAGY---GRKECVALLLEN  317 (353)
Q Consensus       293 ----------------------------------------------------~~G~TpLh~A~~~---g~~~~v~~Ll~~  317 (353)
                                                                          ..|.||||+|+..   +..+++++|+++
T Consensus       157 g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~  236 (351)
T 3utm_A          157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK  236 (351)
T ss_dssp             SCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT
T ss_pred             CCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc
Confidence                                                                4467888888888   457888899999


Q ss_pred             CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          318 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       318 gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus       237 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  271 (351)
T 3utm_A          237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA  271 (351)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            99999999999999999999999999999999763

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.91  E-value=5.1e-24  Score=194.52  Aligned_cols=128  Identities=18%  Similarity=0.204  Sum_probs=117.9

Q ss_pred             hcCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-------C----CCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 018595          224 EVGNEDESIVHHTASV---GDAEGLKNALAAGADK-------D----EEDSEGRTALHFACGYGEVKCAQILLEAGANVD  289 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~g~d~-------~----~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~  289 (353)
                      ..+..|.||||+|+..   |+.++|++|++.|+++       +    ..|..|+||||+||..|+.++|++|+++|++++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  128 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ  128 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            3477899999999987   9999999999998652       2    256799999999999999999999999999999


Q ss_pred             CCCC--------------CCCcHHHHHHHcCCHHHHHHHHH---CCCCCCCcCCCCCCHHHHHHHcCc---------HHH
Q 018595          290 ALDK--------------NKNTALHYAAGYGRKECVALLLE---NGAAVTLQNMDGKTPIDVAKLNSQ---------HDV  343 (353)
Q Consensus       290 ~~d~--------------~G~TpLh~A~~~g~~~~v~~Ll~---~gad~~~~d~~g~TpL~~A~~~g~---------~~i  343 (353)
                      .++.              .|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+         .++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~  208 (273)
T 2pnn_A          129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM  208 (273)
T ss_dssp             CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence            9997              79999999999999999999999   999999999999999999999988         899


Q ss_pred             HHHHHhcC
Q 018595          344 LKLLEKDA  351 (353)
Q Consensus       344 v~~Ll~~~  351 (353)
                      +++|+++|
T Consensus       209 v~~Ll~~g  216 (273)
T 2pnn_A          209 YNEILILG  216 (273)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999864

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=9e-24  Score=194.81  Aligned_cols=140  Identities=25%  Similarity=0.302  Sum_probs=116.0

Q ss_pred             hhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 018595          211 TTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA  290 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~  290 (353)
                      ...+...+.+. ...+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.|++++.
T Consensus        75 v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (285)
T 3d9h_A           75 LRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP  153 (285)
T ss_dssp             HHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC
Confidence            34444555543 45677788888888888888888888888888888888888888888888888888888888888876


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       291 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .+ .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++++.
T Consensus       154 ~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  214 (285)
T 3d9h_A          154 ES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA  214 (285)
T ss_dssp             SC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC
Confidence            44 48888888888888889999998888888889999999999999999999999988763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.91  E-value=1.1e-23  Score=201.75  Aligned_cols=129  Identities=26%  Similarity=0.381  Sum_probs=122.2

Q ss_pred             hhcCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCCC--------CCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCC
Q 018595          223 EEVGNEDESIVHHTASVG---DAEGLKNALAAGADKDE--------EDSEGRTALHFACGYGEVKCAQILLEAG-ANVDA  290 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~g~d~~~--------~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g-adi~~  290 (353)
                      ...+..|.|+||+|+..+   +.+++++|++.|++++.        .|..|+||||+||..|+.++|++|++.+ ++++.
T Consensus       229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~  308 (373)
T 2fo1_E          229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK  308 (373)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred             hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence            445788999999999998   89999999999999886        5679999999999999999999999876 99999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       291 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|..|+||||+|+.+|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|++++
T Consensus       309 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          309 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=1.5e-24  Score=204.11  Aligned_cols=138  Identities=17%  Similarity=0.130  Sum_probs=123.9

Q ss_pred             hhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCC---HHHHHHHHHcC-CCCCC
Q 018595          215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE---VKCAQILLEAG-ANVDA  290 (353)
Q Consensus       215 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~---~~~v~~Ll~~g-adi~~  290 (353)
                      ...+.++....+..|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+   .++++.|++.+ ++++.
T Consensus       117 ~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~  196 (327)
T 1sw6_A          117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL  196 (327)
T ss_dssp             TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred             HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC
Confidence            344444433368899999999999999999999999999999999999999999999998   78888888887 78999


Q ss_pred             CCCCCCcHHHHHHH----cCCHHHHHHHHHCCC---------------------------------------------CC
Q 018595          291 LDKNKNTALHYAAG----YGRKECVALLLENGA---------------------------------------------AV  321 (353)
Q Consensus       291 ~d~~G~TpLh~A~~----~g~~~~v~~Ll~~ga---------------------------------------------d~  321 (353)
                      +|..|+||||+|+.    .|+.+++++|++.++                                             ++
T Consensus       197 ~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~  276 (327)
T 1sw6_A          197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML  276 (327)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCC
Confidence            99999999999999    999999999998743                                             58


Q ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          322 TLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       322 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +.+|..|+||||+|+.+|+.++|++|+++|.
T Consensus       277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga  307 (327)
T 1sw6_A          277 NAQDSNGDTCLNIAARLGNISIVDALLDYGA  307 (327)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            8899999999999999999999999999873

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=2.7e-23  Score=202.19  Aligned_cols=136  Identities=29%  Similarity=0.336  Sum_probs=126.5

Q ss_pred             hhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 018595          213 SADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD  292 (353)
Q Consensus       213 ~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d  292 (353)
                      .+...+.+. ...+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+.+|+.++|++|+++|++++.+|
T Consensus       263 ~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~  341 (437)
T 1n11_A          263 LLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT  341 (437)
T ss_dssp             HHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCC
T ss_pred             HHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCC
Confidence            334444443 4457789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Q 018595          293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  349 (353)
Q Consensus       293 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  349 (353)
                      ..|+||||+|+.+|+.++|++|+++|++++.+|.+|+|||++|+..|+.+++++|..
T Consensus       342 ~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~  398 (437)
T 1n11_A          342 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  398 (437)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.91  E-value=4.4e-24  Score=196.99  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=115.6

Q ss_pred             hhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHhcCCHHHHHHHHHcCCCC
Q 018595          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEG-RTALHFACGYGEVKCAQILLEAGANV  288 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g-~t~Lh~Aa~~g~~~~v~~Ll~~gadi  288 (353)
                      ....+...+.++ ...+..|.||||+|+..|+.+++++|++.|++++.++..| .||||+|+..|+.+++++|+++|+++
T Consensus        77 ~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           77 IVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             HHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             HHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            344555556554 3456778888888888888888888888888888888888 68888888888888888888888776


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHcCcHHHHHHHHhcCC
Q 018595          289 DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP-IDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       289 ~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ... ..|+||||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+.+|+.+++++|+++|.
T Consensus       156 ~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga  219 (285)
T 3kea_A          156 FDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI  219 (285)
T ss_dssp             CCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB
T ss_pred             ccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC
Confidence            322 278899999999999999999999999999999999997 999999999999999988763

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=2.1e-24  Score=193.87  Aligned_cols=125  Identities=20%  Similarity=0.141  Sum_probs=89.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 018595          227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYG  306 (353)
Q Consensus       227 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g  306 (353)
                      ..|.||||.|+..|+.++++.|+++|++++.. ..|.||||+||..|+.++|++|++.|++++.+|..|+||||+||.+|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            45899999999999999999999999999854 78899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          307 RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       307 ~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|.
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  127 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA  127 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999863

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.90  E-value=5e-23  Score=182.72  Aligned_cols=129  Identities=33%  Similarity=0.423  Sum_probs=121.7

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCC-HHHHHHHHHcCCCCCCCCC-CCCcHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE-VKCAQILLEAGANVDALDK-NKNTALH  300 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~-~~~v~~Ll~~gadi~~~d~-~G~TpLh  300 (353)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++ .+++++|++.|++++..+. .|.||||
T Consensus       103 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~  182 (240)
T 3eu9_A          103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALH  182 (240)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred             cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHH
Confidence            3446789999999999999999999999999999999999999999997766 8999999999999999997 8999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          301 YAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       301 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|+.+|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++++
T Consensus       183 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          183 WAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.90  E-value=6.7e-23  Score=181.93  Aligned_cols=137  Identities=26%  Similarity=0.333  Sum_probs=125.7

Q ss_pred             hcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 018595          216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNK  295 (353)
Q Consensus       216 ~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G  295 (353)
                      ..+.+.....+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus        63 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g  142 (240)
T 3eu9_A           63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG  142 (240)
T ss_dssp             HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCC
Confidence            33444444556668999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCC-HHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          296 NTALHYAAGYGR-KECVALLLENGAAVTLQNM-DGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       296 ~TpLh~A~~~g~-~~~v~~Ll~~gad~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .||||+|+..++ .+++++|++.|++++..+. .|.||||+|+.+|+.+++++|+++|.
T Consensus       143 ~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  201 (240)
T 3eu9_A          143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA  201 (240)
T ss_dssp             CCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             CcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999997776 8999999999999999997 99999999999999999999999763

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.90  E-value=2.5e-23  Score=191.82  Aligned_cols=103  Identities=33%  Similarity=0.449  Sum_probs=97.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      +..+.|+||+||..|+.++|++|++.|++++..|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+.+
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCC
Q 018595          306 GRKECVALLLENGAAVTLQNMDG  328 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g  328 (353)
                      |+.++|++|+++|++++..|..|
T Consensus       117 g~~~~v~~Ll~~g~~~~~~~~~g  139 (299)
T 1s70_B          117 GYLDIAEYLISQGAHVGAVNSEG  139 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCHHHHHHHHhCCCCCCCcCCCC
Confidence            99999999999999988776543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=3.4e-23  Score=190.83  Aligned_cols=122  Identities=29%  Similarity=0.407  Sum_probs=116.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 018595          230 ESIVHHTASVGDAEGLKNALAAGADKD------EEDSEGRTALHFACGY---GEVKCAQILLEAGANVDALDKNKNTALH  300 (353)
Q Consensus       230 ~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~------~~d~~g~t~Lh~Aa~~---g~~~~v~~Ll~~gadi~~~d~~G~TpLh  300 (353)
                      .++|+.|+..|+.+.+..++..|++++      ..+..|+||||+||..   |+.+++++|+++|+++|.+|..|+||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            468999999999999999999999854      4478999999999999   8999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          301 YAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       301 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|+..|+.++|++|+++|++++.+|.+|+||||+|+..|+.+++++|++++
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999865

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=2.2e-23  Score=199.41  Aligned_cols=125  Identities=24%  Similarity=0.358  Sum_probs=120.2

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 018595          227 NEDESIVHHTASV-GDAEGLKNALAAGADKDEED--SEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAA  303 (353)
Q Consensus       227 ~~g~t~Lh~Aa~~-g~~~~v~~Ll~~g~d~~~~d--~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~  303 (353)
                      ..+.|+||+|+.. |+++++++|++.|++++..+  ..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            4467899999999 99999999999999999888  89999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          304 GYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       304 ~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      ..|+.++|++|+++|++++.+|.+|+||||+|+..|+.+++++|++.+
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999998753

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.90  E-value=3.8e-23  Score=205.50  Aligned_cols=122  Identities=28%  Similarity=0.425  Sum_probs=117.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHh---cCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 018595          230 ESIVHHTASVGDAEGLKNALAAGADKDEE------DSEGRTALHFACG---YGEVKCAQILLEAGANVDALDKNKNTALH  300 (353)
Q Consensus       230 ~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~------d~~g~t~Lh~Aa~---~g~~~~v~~Ll~~gadi~~~d~~G~TpLh  300 (353)
                      .+.||.|+..|+.+.|+.|++.|++++..      +..|+||||+||.   .|+.++|++|+++|+++|.+|..|+||||
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh  212 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  212 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence            46799999999999999999999999877      8899999999976   89999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          301 YAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       301 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|+.+|+.++|++|+++||+++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g  263 (497)
T 3lvq_E          213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ  263 (497)
T ss_dssp             HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999986

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.89  E-value=1.4e-22  Score=190.53  Aligned_cols=127  Identities=28%  Similarity=0.285  Sum_probs=89.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCCcHH
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGE----VKCAQILLEAGANVDALDKNKNTAL  299 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~-~g~d~~~~d~~g~t~Lh~Aa~~g~----~~~v~~Ll~~gadi~~~d~~G~TpL  299 (353)
                      .+..|.||||+|+..|+.++|++||+ .|++++.+|..|+|+||+++..+.    ..++++|+++|++++.+|..|+|||
T Consensus       164 ~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L  243 (337)
T 4g8k_A          164 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  243 (337)
T ss_dssp             CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred             ccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            35567777777777777777777774 467777777777777776655433    3466677777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          300 HYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       300 h~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |+|+..|+.+++++|++. |++++.+|.+|+||||+|+.+|+.++|++|+++|
T Consensus       244 ~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          244 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             HHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            777777777777777764 6777777777777777777777777777777665

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=4.2e-23  Score=192.32  Aligned_cols=123  Identities=28%  Similarity=0.432  Sum_probs=117.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 018595          229 DESIVHHTASVGDAEGLKNALAAGADKDE------EDSEGRTALHFACGY---GEVKCAQILLEAGANVDALDKNKNTAL  299 (353)
Q Consensus       229 g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~------~d~~g~t~Lh~Aa~~---g~~~~v~~Ll~~gadi~~~d~~G~TpL  299 (353)
                      ..++|+.|+..|+.+.|+.|++.|++++.      .+..|+||||+||..   |+.++|++|+++|++++.+|..|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            45779999999999999999999999987      689999999999997   899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       300 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |+|+.+|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++++
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g  282 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ  282 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999864

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=6.3e-23  Score=196.40  Aligned_cols=129  Identities=30%  Similarity=0.349  Sum_probs=119.2

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcHHHHHHhcC---CHHHHHHHHHcCCCCCC-------
Q 018595          224 EVGNEDESIVHHTASVGDAEGLKNALAAG---ADKDEEDSEGRTALHFACGYG---EVKCAQILLEAGANVDA-------  290 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g---~d~~~~d~~g~t~Lh~Aa~~g---~~~~v~~Ll~~gadi~~-------  290 (353)
                      ..+..|.|+||+|+..|+.+++++|++.+   ++++..|..|.||||+|+..+   +.+++++|++.|++++.       
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  273 (373)
T 2fo1_E          194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  273 (373)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC
Confidence            45678999999999999999999999988   789999999999999999988   89999999999999886       


Q ss_pred             -CCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          291 -LDKNKNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       291 -~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                       .|..|+||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+.+|+.++|++|+++|.
T Consensus       274 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  337 (373)
T 2fo1_E          274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA  337 (373)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence             6778999999999999999999999875 9999999999999999999999999999999864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=6.5e-23  Score=156.77  Aligned_cols=90  Identities=47%  Similarity=0.691  Sum_probs=50.1

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Q 018595          262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH  341 (353)
Q Consensus       262 g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~  341 (353)
                      |+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhcC
Q 018595          342 DVLKLLEKDA  351 (353)
Q Consensus       342 ~iv~~Ll~~~  351 (353)
                      +++++|+++|
T Consensus        82 ~~~~~Ll~~g   91 (93)
T 1n0q_A           82 EVVKLLLEAG   91 (93)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            5555555544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.89  E-value=2.3e-22  Score=189.02  Aligned_cols=124  Identities=24%  Similarity=0.263  Sum_probs=114.2

Q ss_pred             hhcCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCc
Q 018595          223 EEVGNEDESIVHHTASVGD----AEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA-GANVDALDKNKNT  297 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~----~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~-gadi~~~d~~G~T  297 (353)
                      +..+..|.|+||+++..+.    ..++++|+++|++++.+|..|+||||+|+..|+.++|++|+.. |++++.+|..|+|
T Consensus       196 n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~T  275 (337)
T 4g8k_A          196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT  275 (337)
T ss_dssp             TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCB
T ss_pred             CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCC
Confidence            4567889999999887643    3578999999999999999999999999999999999999985 8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          298 ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       298 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |||+|+.+|+.++|++|+++||+++.+     ||||+|+.+|+.++|++|+++|
T Consensus       276 pL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~G  324 (337)
T 4g8k_A          276 ALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHG  324 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCc
Confidence            999999999999999999999999764     5999999999999999999987

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=9.9e-23  Score=155.73  Aligned_cols=93  Identities=46%  Similarity=0.621  Sum_probs=89.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 018595          228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR  307 (353)
Q Consensus       228 ~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~  307 (353)
                      +|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCC
Q 018595          308 KECVALLLENGAA  320 (353)
Q Consensus       308 ~~~v~~Ll~~gad  320 (353)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999985

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=1e-22  Score=170.63  Aligned_cols=112  Identities=18%  Similarity=0.166  Sum_probs=91.2

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRT-ALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t-~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      ...+..|.||||+|+ .|+.+++++|++.|++++.+|..|+| |||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus        39 ~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  117 (156)
T 1bi7_B           39 NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL  117 (156)
T ss_dssp             TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH
T ss_pred             CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            345778999999985 99999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Q 018595          302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA  335 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A  335 (353)
                      |+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus       118 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          118 AEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999999999999999998743

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=6.4e-23  Score=162.72  Aligned_cols=108  Identities=32%  Similarity=0.464  Sum_probs=102.5

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG  304 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~  304 (353)
                      .+..|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHH
Q 018595          305 YGRKECVALLLENGAAVTLQNMDGKTPI  332 (353)
Q Consensus       305 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL  332 (353)
                      .|+.+++++|+++|++++.++..|.||-
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999884

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=9.9e-23  Score=189.82  Aligned_cols=111  Identities=26%  Similarity=0.356  Sum_probs=99.2

Q ss_pred             cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          225 VGNEDESIVHHTASV---GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      .+..|.||||+|+..   |+.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~  265 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI  265 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHH
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            477899999999997   89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Q 018595          302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH  341 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~  341 (353)
                      |+..|+.+++++|+++|++      .|.||||+|+.+|+.
T Consensus       266 A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          266 ARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            9999999999999999986      589999999998874

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.87  E-value=7.3e-24  Score=189.64  Aligned_cols=125  Identities=20%  Similarity=0.217  Sum_probs=113.6

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHY  301 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d-~~G~TpLh~  301 (353)
                      ...+..|.||||+||..|+.+++++|++.|++++.+|..|+||||+||..|+.++|++|++.|++++.++ ..|+||||+
T Consensus        48 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  127 (229)
T 2vge_A           48 SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK  127 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGG
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHH
Confidence            3457889999999999999999999999999999999999999999999999999999999999999987 699999999


Q ss_pred             H--HHcCCHHHHHHHHHCCCCC--------------------------------CCcCCCCCCHHHHHHHcCcHHHHHHH
Q 018595          302 A--AGYGRKECVALLLENGAAV--------------------------------TLQNMDGKTPIDVAKLNSQHDVLKLL  347 (353)
Q Consensus       302 A--~~~g~~~~v~~Ll~~gad~--------------------------------~~~d~~g~TpL~~A~~~g~~~iv~~L  347 (353)
                      |  +..|+.+++++|+++|+++                                +.+|..|+||||+|+.+|+.++|+.+
T Consensus       128 A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          128 CDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             CCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             HHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            9  9999999999999987644                                34577799999999999988877643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.86  E-value=2.3e-22  Score=189.20  Aligned_cols=143  Identities=24%  Similarity=0.213  Sum_probs=114.0

Q ss_pred             CCHHHHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCC---HHHHHHHHHcC-CCC
Q 018595          180 GGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGD---AEGLKNALAAG-ADK  255 (353)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~---~~~v~~Ll~~g-~d~  255 (353)
                      ..+.+++...++.++++.|.+                .|.++ ...+..|+||||+|+..|+   .++++.|++.+ +++
T Consensus       132 ~TpLh~Aa~~g~~~~v~~Ll~----------------~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~  194 (327)
T 1sw6_A          132 NTPLHWLTSIANLELVKHLVK----------------HGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL  194 (327)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH----------------TTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred             CcHHHHHHHcCCHHHHHHHHH----------------cCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc
Confidence            345555555666666666542                33333 3557778899999988887   67777787776 678


Q ss_pred             CCCCCCCCcHHHHHHh----cCCHHHHHHHHHcCC---------------------------------------------
Q 018595          256 DEEDSEGRTALHFACG----YGEVKCAQILLEAGA---------------------------------------------  286 (353)
Q Consensus       256 ~~~d~~g~t~Lh~Aa~----~g~~~~v~~Ll~~ga---------------------------------------------  286 (353)
                      +.+|..|+||||+|+.    .|+.+++++|++.++                                             
T Consensus       195 ~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~  274 (327)
T 1sw6_A          195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  274 (327)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHh
Confidence            8888888999999888    888888888887643                                             


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Q 018595          287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  339 (353)
Q Consensus       287 di~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g  339 (353)
                      +++.+|..|+||||+||.+|+.++|++|+++|++++.+|..|+||||+|+.+|
T Consensus       275 ~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            58889999999999999999999999999999999999999999999998765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=2.4e-21  Score=158.41  Aligned_cols=100  Identities=30%  Similarity=0.405  Sum_probs=94.1

Q ss_pred             CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Q 018595          252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP  331 (353)
Q Consensus       252 g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~Tp  331 (353)
                      |+|+ .+|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            5677 678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCC
Q 018595          332 IDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       332 L~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ||+|+.+|+.+++++|+++|.
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga  100 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGA  100 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.86  E-value=2.3e-22  Score=174.32  Aligned_cols=121  Identities=18%  Similarity=0.148  Sum_probs=108.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 018595          229 DESIVHHTASVGDAEGLKNALAAGADKDEED-SEGRTALHFACGYGEV----KCAQILLEAGANVDALDKNKNTALHYAA  303 (353)
Q Consensus       229 g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d-~~g~t~Lh~Aa~~g~~----~~v~~Ll~~gadi~~~d~~G~TpLh~A~  303 (353)
                      ++++|+.|+..|+.+.++.++..+.  +..+ ..|+||||+|+..++.    +++++|+++|+++|.+|..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4678999999999999999998874  4455 7899999999999975    5999999999999999999999999999


Q ss_pred             HcCC------HHHHHHHHHCCCCCCCcCCCCC-CHHHHHHHcC-----cHHHHHHHHh-cC
Q 018595          304 GYGR------KECVALLLENGAAVTLQNMDGK-TPIDVAKLNS-----QHDVLKLLEK-DA  351 (353)
Q Consensus       304 ~~g~------~~~v~~Ll~~gad~~~~d~~g~-TpL~~A~~~g-----~~~iv~~Ll~-~~  351 (353)
                      .+|+      .+++++|+++|++++.+|..|+ ||||+|+.++     +.+++++|++ +|
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g  144 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG  144 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC
Confidence            9987      6889999999999999999999 9999999954     4579999998 65

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.84  E-value=3.7e-21  Score=157.32  Aligned_cols=100  Identities=23%  Similarity=0.268  Sum_probs=96.5

Q ss_pred             CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-CCC
Q 018595          252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMD-GKT  330 (353)
Q Consensus       252 g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~T  330 (353)
                      +++++..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |+|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            46888999999999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCC
Q 018595          331 PIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       331 pL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |||+|+.+|+.+++++|++++.
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga  102 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGA  102 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999763

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.84  E-value=3.6e-20  Score=151.39  Aligned_cols=96  Identities=28%  Similarity=0.356  Sum_probs=91.7

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      +..+..|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        41 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A  120 (136)
T 2jab_A           41 NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS  120 (136)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHH
Confidence            44577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCC
Q 018595          303 AGYGRKECVALLLENG  318 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~g  318 (353)
                      +..|+.+++++|+++|
T Consensus       121 ~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          121 IGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTTCHHHHHHHHHC-
T ss_pred             HHCCCHHHHHHHHHcC
Confidence            9999999999999876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.84  E-value=3.1e-22  Score=192.04  Aligned_cols=125  Identities=18%  Similarity=0.149  Sum_probs=105.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC---CCCCCCCCcHH
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADK---DEEDSEGRTALHFACGYGEVKCAQILLEAGANV---DALDKNKNTAL  299 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~---~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi---~~~d~~G~TpL  299 (353)
                      +..+.||||+|+..|+.++|++|++.|+..   +..+..|.||||+||..|+.++|++|+++|+++   +..+.. +|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            455679999999999999999999998732   234567889999999999999999999999762   333333 8999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHH-HcCcHHHHHHHHhcC
Q 018595          300 HYAAGYGRKECVALLLENGAAVTL--QNMDGKTPIDVAK-LNSQHDVLKLLEKDA  351 (353)
Q Consensus       300 h~A~~~g~~~~v~~Ll~~gad~~~--~d~~g~TpL~~A~-~~g~~~iv~~Ll~~~  351 (353)
                      |+||..|+.++|++|+++|++++.  .|..|+||||+|+ .+|+.++|++|+++|
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            999999999999999999999887  8889999999999 999999999999764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.84  E-value=6.6e-20  Score=146.42  Aligned_cols=98  Identities=44%  Similarity=0.590  Sum_probs=94.1

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        29 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A  108 (126)
T 1n0r_A           29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA  108 (126)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            34467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCC
Q 018595          303 AGYGRKECVALLLENGAA  320 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad  320 (353)
                      +..|+.+++++|+++|++
T Consensus       109 ~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          109 ARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHTTCHHHHHHHHHHTCC
T ss_pred             HHcCcHHHHHHHHHcCCC
Confidence            999999999999999986

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=8.5e-21  Score=150.37  Aligned_cols=96  Identities=41%  Similarity=0.565  Sum_probs=92.9

Q ss_pred             CCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Q 018595          257 EEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK  336 (353)
Q Consensus       257 ~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~  336 (353)
                      .+|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCC
Q 018595          337 LNSQHDVLKLLEKDAF  352 (353)
Q Consensus       337 ~~g~~~iv~~Ll~~~~  352 (353)
                      .+++.+++++|+++|.
T Consensus        84 ~~~~~~~~~~Ll~~ga   99 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGA   99 (115)
T ss_dssp             TTTCHHHHHHHHTTSS
T ss_pred             HCCCHHHHHHHHHcCC
Confidence            9999999999999874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=3.1e-20  Score=149.03  Aligned_cols=94  Identities=23%  Similarity=0.306  Sum_probs=89.0

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Q 018595          259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN  338 (353)
Q Consensus       259 d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~  338 (353)
                      +..|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+.+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCC
Q 018595          339 SQHDVLKLLEKDAF  352 (353)
Q Consensus       339 g~~~iv~~Ll~~~~  352 (353)
                      |+.+++++|++++.
T Consensus        84 ~~~~~v~~Ll~~ga   97 (123)
T 3aaa_C           84 GHVSCVKLLLSKGA   97 (123)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            99999999999863

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.82  E-value=3.5e-20  Score=146.23  Aligned_cols=90  Identities=40%  Similarity=0.445  Sum_probs=65.0

Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Q 018595          258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL  337 (353)
Q Consensus       258 ~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~  337 (353)
                      .+.+|+|+||+||..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCcHHHHHHH
Q 018595          338 NSQHDVLKLL  347 (353)
Q Consensus       338 ~g~~~iv~~L  347 (353)
                      +|+.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            7777777766

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=2.9e-19  Score=164.40  Aligned_cols=97  Identities=21%  Similarity=0.356  Sum_probs=93.4

Q ss_pred             cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          225 VGNEDESIVHHTASV---GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus       165 ~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~  244 (278)
T 1dcq_A          165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  244 (278)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHH
Confidence            367899999999999   89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCC
Q 018595          302 AAGYGRKECVALLLENGAAV  321 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad~  321 (353)
                      |+..|+.+++++|+++|++.
T Consensus       245 A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          245 AKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999998853

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=2.1e-19  Score=141.77  Aligned_cols=94  Identities=30%  Similarity=0.480  Sum_probs=86.5

Q ss_pred             hhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 018595          221 EAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALH  300 (353)
Q Consensus       221 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh  300 (353)
                      .....+.+|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            33566888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHH
Q 018595          301 YAAGYGRKECVALL  314 (353)
Q Consensus       301 ~A~~~g~~~~v~~L  314 (353)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999987

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.79  E-value=8.4e-21  Score=163.25  Aligned_cols=93  Identities=32%  Similarity=0.398  Sum_probs=89.2

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHH
Q 018595          259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKL  337 (353)
Q Consensus       259 d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~  337 (353)
                      +..|+||||+||..|+.+++++|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578999999999999999999999 99999999999999999999999999999999999999998 899999999999


Q ss_pred             cCcHHHHHHHHhcCC
Q 018595          338 NSQHDVLKLLEKDAF  352 (353)
Q Consensus       338 ~g~~~iv~~Ll~~~~  352 (353)
                      +|+.+++++|+++|.
T Consensus       120 ~~~~~~v~~Ll~~ga  134 (183)
T 3deo_A          120 YVRPEVVEALVELGA  134 (183)
T ss_dssp             TTCHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHcCC
Confidence            999999999999763

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.78  E-value=2.5e-19  Score=158.43  Aligned_cols=107  Identities=20%  Similarity=0.213  Sum_probs=86.9

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      ...+..|.||||+||..|+.++|++|++. |++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus       100 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  179 (222)
T 3ehr_A          100 NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM  179 (222)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHH
Confidence            44577899999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCC
Q 018595          302 AAGYGRKECVALLLENGAAVTLQNMDGK  329 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad~~~~d~~g~  329 (353)
                      |+..|+.++++.|+..|+..+..+..++
T Consensus       180 A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          180 ATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             CCSHHHHHHHC-----------------
T ss_pred             hcchhHHHHHHHHhccchhhhccchhhh
Confidence            9999999999999999999888776654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.78  E-value=4e-21  Score=184.31  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=105.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC--CCCCCCcHHH
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADK---DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA--LDKNKNTALH  300 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~---~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~--~d~~G~TpLh  300 (353)
                      +..|.||||+||..|+.++|++|+++|+++   +..+.. +||||+||..|+.++|++|+++|++++.  .|..|+||||
T Consensus       125 ~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~  203 (376)
T 2aja_A          125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR  203 (376)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHH
Confidence            345788999999999999999999999763   222223 9999999999999999999999999887  8889999999


Q ss_pred             HHH-HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          301 YAA-GYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       301 ~A~-~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +|+ ..|+.++|++|+++|++       |.||||+|+.+|+.+++++|++++
T Consensus       204 ~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~g  248 (376)
T 2aja_A          204 WAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHV  248 (376)
T ss_dssp             HHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcC
Confidence            999 99999999999998753       899999999999999999999864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=2.1e-18  Score=164.88  Aligned_cols=130  Identities=24%  Similarity=0.251  Sum_probs=97.4

Q ss_pred             hhhhhhcCcchhhhc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 018595          211 TTSADNAGADEAEEV-GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD  289 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~  289 (353)
                      ...+...+.++.... +..|.||||+|+..|+.++|++|+++|++++..|..|+||||+|+..|+.++|++|+++|++++
T Consensus       216 v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~  295 (368)
T 3jue_A          216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG  295 (368)
T ss_dssp             HHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC
Confidence            344455666654322 2789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCc
Q 018595          290 ALDKNKNTALHYAAGYGRKECVALLLENG---AAVTLQNMDGKTPIDVAKLNSQ  340 (353)
Q Consensus       290 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~g~TpL~~A~~~g~  340 (353)
                      .+|..|+||||+|+..|+.+++++|+..+   ++....+..+.|+++++.....
T Consensus       296 ~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          296 ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence            99999999999999999999999999875   4445667789999998877653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.75  E-value=2.3e-18  Score=155.02  Aligned_cols=120  Identities=28%  Similarity=0.283  Sum_probs=99.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 018595          229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK  308 (353)
Q Consensus       229 g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~  308 (353)
                      +.+++.+++..|+.+.+..+...+.+   .+..|.||||+||..|+.++|++|++ |++++.+|..|+||||+||.+|+.
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~   90 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSD   90 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGSCHH---HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCH
T ss_pred             CccHHHHHHHcCCCcccccccccccc---cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCH
Confidence            34444444445544433333222222   23578999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          309 ECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       309 ~~v~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ++|++|+++|++++.++ ..|+||||+|+.+|+.+++++|+++|.
T Consensus        91 ~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  135 (244)
T 3ui2_A           91 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA  135 (244)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            99999999999999998 889999999999999999999999863

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.004  Score=44.07  Aligned_cols=56  Identities=29%  Similarity=0.461  Sum_probs=39.8

Q ss_pred             chhhhccCCCCccHHHHHHHHhcCCcHHHHHHHHHHHhccCCcCCCCCCCChHHHHHHHHHhhcCcHHHHHHHHHhhh
Q 018595           57 DFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNA  134 (353)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~q~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~~~mae~~g~~  134 (353)
                      +...+..+|+||   +++. |++||.|.+++++++..              |    ..+++.++||.+..+.+++...
T Consensus         9 ~ee~~~~~m~dP---Ei~~-im~DP~~~~~lq~~~~N--------------P----~~~~k~~~nP~v~~~i~kl~~a   64 (71)
T 2llw_A            9 PEETYQRAMKDP---EVAA-IMQDPVMQSILQQAQQN--------------P----AALQEHMKNPEVFKKIQTLIAA   64 (71)
T ss_dssp             HHHHHHHHHHSH---HHHH-HHTCTHHHHHHHHHHHC--------------H----HHHHHHHHSHHHHHHHHHHHHT
T ss_pred             cHHHHHHHhcCH---HHHH-HhCCHHHHHHHHHHHHC--------------H----HHHHHHHhCHHHHHHHHHHHHc
Confidence            345555677888   4443 67888888888877651              1    6778888899999888888643

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=94.04  E-value=0.031  Score=38.37  Aligned_cols=49  Identities=10%  Similarity=0.319  Sum_probs=29.1

Q ss_pred             hccCCCCccHHHHHHHHhcCCcHHHHHHHHHHHhccCCcCCCCCCCChHHHHHHHHHhhcCcHHHHHHHHH
Q 018595           61 MSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERL  131 (353)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~p~~~~~a~q~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~~~mae~~  131 (353)
                      ++.+++||   +.+. +++||.|.++.+++++.              +    ..+++.++||.+......+
T Consensus         5 ~~kl~~dP---e~~~-~m~dP~~~~~lq~i~~N--------------P----~~~~~~~~dP~v~~~~~~L   53 (62)
T 2lnm_A            5 ISKIMENP---DVAM-AFQNPRVQAALMECSEN--------------P----MNIMKYQNDKEVMDVFNKI   53 (62)
T ss_dssp             HHHHTTSH---HHHH-HTTSHHHHHHHHHHTTC--------------G----GGHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCh---HHHH-HcCCHHHHHHHHHHHHC--------------H----HHHHHHHhChHHHHHHHHH
Confidence            34567777   4443 56777777666665541              1    3455566677766665554

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=90.16  E-value=0.099  Score=35.77  Aligned_cols=43  Identities=16%  Similarity=0.175  Sum_probs=31.6

Q ss_pred             CCCCCCchhhhccCCCCccHHHHHHHHhcCCcHHHHHHHHHHHhcc
Q 018595           51 AAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHG   96 (353)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~q~~k~~~~   96 (353)
                      .+.+|-.++.++.+.+||   ..+...++||.+.++.+.+..-+++
T Consensus        17 ~m~dP~~~~~lq~i~~NP---~~~~~~~~dP~v~~~~~~L~~~~~g   59 (62)
T 2lnm_A           17 AFQNPRVQAALMECSENP---MNIMKYQNDKEVMDVFNKISQLFPG   59 (62)
T ss_dssp             HTTSHHHHHHHHHHTTCG---GGHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             HcCCHHHHHHHHHHHHCH---HHHHHHHhChHHHHHHHHHHHHhCC
Confidence            355677777778888888   6666778888888888887665554

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=87.17  E-value=0.096  Score=36.89  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=22.1

Q ss_pred             CCCCCchhhhccCCCCccHHHHHHHHhcCCcHHHHHHHHH
Q 018595           52 APNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQ   91 (353)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~q~~   91 (353)
                      +.||..++.++.+++||   ..+...++||.|..+.+.+.
T Consensus        26 m~DP~~~~~lq~~~~NP---~~~~k~~~nP~v~~~i~kl~   62 (71)
T 2llw_A           26 MQDPVMQSILQQAQQNP---AALQEHMKNPEVFKKIQTLI   62 (71)
T ss_dssp             HTCTHHHHHHHHHHHCH---HHHHHHHHSHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHCH---HHHHHHHhCHHHHHHHHHHH
Confidence            44555555556666666   55555666666666666653

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=83.47  E-value=0.16  Score=35.81  Aligned_cols=27  Identities=22%  Similarity=0.384  Sum_probs=17.5

Q ss_pred             ccCCCCccHHHHHHHHhcCCcHHHHHHHHHH
Q 018595           62 SGLLNDPSIKELAEQIAKDPAFNSMAEQLQK   92 (353)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~p~~~~~a~q~~k   92 (353)
                      +.|.+||.+++    +++||.|.++.+++++
T Consensus        17 ~kl~~dP~t~~----~~~DP~~~~~lq~i~~   43 (71)
T 2llv_A           17 ENLKKNPKTSE----MMKDPQLVAKLIGYKQ   43 (71)
T ss_dssp             HHHHHSSTTHH----HHHSCTHHHHHHHHHH
T ss_pred             HHHHcChHHHH----HhcCHHHHHHHHHHHH
Confidence            44566663333    4567888888877776

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=83.22  E-value=0.36  Score=33.91  Aligned_cols=58  Identities=31%  Similarity=0.533  Sum_probs=38.1

Q ss_pred             cCCCCccHHHHHHHHhcCCcHHHHHHHHHHHhccCCcCCCCCCCChHHHHHHHHHhhcCcHHHHHHHHHhhhhcCCHHHH
Q 018595           63 GLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMS  142 (353)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~p~~~~~a~q~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~~~mae~~g~~~m~dp~~~  142 (353)
                      ++|++|   ++.+.|++||..+.+-+.                  + .|+..++++.+||+...      ...++||.+.
T Consensus         8 ~~f~~p---~~~~kl~~dP~t~~~~~D------------------P-~~~~~lq~i~~NP~~i~------~~~~~dPrv~   59 (71)
T 2llv_A            8 QLFADP---NLIENLKKNPKTSEMMKD------------------P-QLVAKLIGYKQNPQAIG------QDLFTDPRLM   59 (71)
T ss_dssp             HHHHSS---SCHHHHHHSSTTHHHHHS------------------C-THHHHHHHHHHSCTTHH------HHTTTCHHHH
T ss_pred             hhccCh---HHHHHHHcChHHHHHhcC------------------H-HHHHHHHHHHHCHHHHH------HHHhhCcHHH
Confidence            356678   666678889966655533                  1 46788888888888442      1146788777


Q ss_pred             hhhhhc
Q 018595          143 HMMESL  148 (353)
Q Consensus       143 ~m~e~l  148 (353)
                      ...+.|
T Consensus        60 ~~l~~L   65 (71)
T 2llv_A           60 TIMATL   65 (71)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766554

>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0

Probab=80.82  E-value=1.3  Score=33.66  Aligned_cols=75  Identities=15%  Similarity=0.211  Sum_probs=53.3

Q ss_pred             cCCcHHHHHHHHHHHhccCCcCCCCCCCChHHHHHHHHHhhc------CcHHHHHHHHHhhhhcCCHHHHhhhhhcCCCC
Q 018595           79 KDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQ------NPQFMTMAERLGNALMQDPSMSHMMESLTNPT  152 (353)
Q Consensus        79 ~~p~~~~~a~q~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~------nP~~~~mae~~g~~~m~dp~~~~m~e~l~~~~  152 (353)
                      .+..|.++++.+++--.+  +....+..+.++||+-++|.+.      .|.++.+..+..         |..|..++...
T Consensus         4 ~~~~F~~A~~~vk~l~~~--g~~~ps~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~raK---------w~AW~~l~gmS   72 (106)
T 3fp5_A            4 SKAKFDKAVEIVQSLPKD--GPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAK---------WDAWKSVEGTS   72 (106)
T ss_dssp             CHHHHHHHHHHHHHCCSS--SSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHH---------HHHHHTTTTCC
T ss_pred             hHHHHHHHHHHHHhcccc--cCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHH---------HHHHHHccCCC
Confidence            345688898888753221  1124556677899999999985      577776666654         88999999888


Q ss_pred             ChhHHHHHHHHh
Q 018595          153 KKDQIEERMAKI  164 (353)
Q Consensus       153 ~~~~~~~~l~~l  164 (353)
                      ..+.+..++..+
T Consensus        73 ~eeA~~~YI~~v   84 (106)
T 3fp5_A           73 KEVAYQKYVEKL   84 (106)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            877777666553

>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}

Probab=80.82  E-value=1.9  Score=32.08  Aligned_cols=74  Identities=12%  Similarity=0.184  Sum_probs=54.0

Q ss_pred             hcCCcHHHHHHHHHHHhccCCcCCCCCCCChHHHHHHHHHhhc------CcHHHHHHHHHhhhhcCCHHHHhhhhhcCCC
Q 018595           78 AKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQ------NPQFMTMAERLGNALMQDPSMSHMMESLTNP  151 (353)
Q Consensus        78 ~~~p~~~~~a~q~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~------nP~~~~mae~~g~~~m~dp~~~~m~e~l~~~  151 (353)
                      |+-..|.++++.+++-- .    ...+..+.+++|+-++|.+.      .|.++.+..+.         .|..|..++..
T Consensus         9 ~~~~~F~~A~~~vk~l~-~----~~ps~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~gra---------Kw~AW~~l~gm   74 (96)
T 2lbb_A            9 MSADDFDAAVKYVSNTT-T----MMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKY---------KWEAWNALRGM   74 (96)
T ss_dssp             CCSSTHHHHHHHHHHCC-C----SCCCTTTTTHHHHHHHHTTTSSCCCCCCCSSCSHHHH---------HHHHHHHTTTC
T ss_pred             cCHHHHHHHHHHHHhCC-C----CCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHhHH---------HHHHHHHhcCC
Confidence            55677999999987522 1    24567788899999999985      56655555544         38889999988


Q ss_pred             CChhHHHHHHHHhh
Q 018595          152 TKKDQIEERMAKIK  165 (353)
Q Consensus       152 ~~~~~~~~~l~~l~  165 (353)
                      ...+.+..++..+.
T Consensus        75 S~eeAm~~YI~lv~   88 (96)
T 2lbb_A           75 STESAKEAYVKLLD   88 (96)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888777776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-22
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-17
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.004
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	8e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-06

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 2e-22
 Identities = 28/84 (33%), Positives = 41/84 (48%)

Query: 264 TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTL 323
           T LH A   G +   + LL+ GA+ +  +    T LH AA  G  E    LL+N A V  
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 324 QNMDGKTPIDVAKLNSQHDVLKLL 347
           +  D +TP+  A      +++KLL
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLL 85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 4e-22
 Identities = 37/108 (34%), Positives = 50/108 (46%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H  + +G    +KN L  GA  +  + +  T LH A   G  + A+ LL+  A V+A  K
Sbjct: 5   HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 64

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 341
           +  T LH AA  G    V LLLEN A   L    G TP+ +A      
Sbjct: 65  DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 2e-20
 Identities = 39/122 (31%), Positives = 56/122 (45%)

Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
               + +H  A  G        +  G   D     G T LH A  YG +K  + LL+  A
Sbjct: 262 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 321

Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 346
           +V+A  K   + LH AA  G  + V LLL+NGA+    + DG TP+ +AK      V  +
Sbjct: 322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV 381

Query: 347 LE 348
           L+
Sbjct: 382 LK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 3e-16
 Identities = 41/167 (24%), Positives = 59/167 (35%), Gaps = 34/167 (20%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             GA        + E+ +H  A  G  E  K  L   A  + +  + +T LH A   G  
Sbjct: 21  QRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 79

Query: 276 KCAQILLEA---------------------------------GANVDALDKNKNTALHYA 302
              ++LLE                                   A+   + K   T LH A
Sbjct: 80  NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 139

Query: 303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           A YG+     LLLE  A       +G TP+ VA  ++  D++KLL  
Sbjct: 140 AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 1e-14
 Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 1/132 (0%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
              A      G    + +H      + + +K  L  G         G T LH A    +V
Sbjct: 153 ERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 211

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           + A+ LL+ G + +A      T LH AA  G  E VALLL   A   L N  G TP+ + 
Sbjct: 212 EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 271

Query: 336 KLNSQHDVLKLL 347
                  V  +L
Sbjct: 272 AQEGHVPVADVL 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 1e-14
 Identities = 33/96 (34%), Positives = 50/96 (52%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
            A +     +G T LH A  YG+V+ A++LLE  A+ +A  KN  T LH A  +   + V
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 312 ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            LLL  G +      +G TP+ +A   +Q +V + L
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 2e-14
 Identities = 27/119 (22%), Positives = 49/119 (41%)

Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
            +  + +H  A  G     +  L   A  +     G T LH A  +  +   ++LL  G 
Sbjct: 130 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 189

Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 345
           +  +   N  T LH AA   + E    LL+ G +   +++ G TP+ +A      +++ 
Sbjct: 190 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 248

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 5e-14
 Identities = 36/114 (31%), Positives = 54/114 (47%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
           H  A  G AE +   L+  A+ +  +  G T LH     G V  A +L++ G  VDA  +
Sbjct: 236 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 295

Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
              T LH A+ YG  + V  LL++ A V  +   G +P+  A      D++ LL
Sbjct: 296 MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 349

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 1/138 (0%)

Query: 209 DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF 268
           D        G            + +H  A     E  ++ L  G   + E  +G T LH 
Sbjct: 179 DIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 237

Query: 269 ACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 328
           A   G  +   +LL   AN +  +K+  T LH  A  G      +L+++G  V      G
Sbjct: 238 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 297

Query: 329 KTPIDVAKLNSQHDVLKL 346
            TP+ VA       ++K 
Sbjct: 298 YTPLHVASHYGNIKLVKF 315

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 5e-08
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL- 281
                   S +H  A  G  + +   L  GA  +E  S+G T L  A   G +    +L 
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

Query: 282 --LEAGANVDALDKNKNTA 298
              +  + V   DK++ + 
Sbjct: 384 VVTDETSFVLVSDKHRMSF 402

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 6e-22
 Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL 282
             V     + +H+ AS    E     L  GA+ D +D    TA+H A   G +K   ILL
Sbjct: 97  NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL 156

Query: 283 EAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD 342
              A+ +  D   NT LH A    R E   LL+  GA++ ++N + KTP+ VAK      
Sbjct: 157 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGL 215

Query: 343 VLKLL 347
           +LK +
Sbjct: 216 ILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 2e-17
 Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 34/135 (25%)

Query: 232 IVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYG----------------- 273
           +V + A  G  E LK ++ A  +     D + RTALH+AC  G                 
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 274 ----------------EVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN 317
                             +  + LL  GA V+A+++N  T LHYAA   R E   +LLE 
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 318 GAAVTLQNMDGKTPI 332
           GA    ++    T +
Sbjct: 126 GANPDAKDHYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 2e-13
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
             GA+  +   + + + +H  A+ G+ + +   L   A  + +D+EG T LH AC    V
Sbjct: 124 EGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 182

Query: 276 KCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLE 316
           + A++L+  GA++   +K + T L  A G G    +  ++E
Sbjct: 183 EEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 4e-20
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 215 DNAGAD--EAEEVGNEDESIVHHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACG 271
           D  GAD    + +G         ++   D E + + L   GAD +     G+T L  A  
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228

Query: 272 YGEVKCAQILLE-AGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNM 326
              +   Q LLE     ++  D +  TAL  A     K+   LL + GA+    ++
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 9e-17
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 220 DEAEEVGNEDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEVKCA 278
           ++ E +     + +   A  G  E LK  L   GAD +  D+ GR AL  A    +    
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 279 ----QILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPID 333
                +LL+ GA+V+   +   T L  A        V  LLE     +   + DGKT + 
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 334 VAKLNSQHDVLKLL 347
           +A       + +LL
Sbjct: 259 LAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 4e-10
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVALLL 315
           E    L  A    +V   Q LLE GANV+  + +   T LH A    R++ V LLL
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 1e-08
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSE-GRTALHFACGYGEVKCAQILLEAGA 286
           ED  ++       D + ++  L  GA+ + ++ E G T LH A         ++LL  GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           +     KN  T    AA  G  + + L L  GA V   +  G T    A
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 5e-06
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 296 NTALHYAAGYGRKECVALLLENGAAVTLQ-NMDGKTPIDVAKLNSQHDVLKL 346
           N  L  A      + V  LLE GA V  Q    G TP+  A   S+ D+++L
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL 57

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 85.6 bits (210), Expect = 1e-19
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQIL-LEAGANVDALDKNKNTALHYAAGYGRKEC 310
            A KD E  +GRTALH+A     +   + L  E G+N D  D++  T +  AA  GR E 
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 311 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           V  L++ GA+V   +    T   +A+ N+ H+++ + ++
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.7 bits (143), Expect = 7e-11
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN--- 317
           E    LH     G     + +     N+    ++  T LH+ A     E    L+ +   
Sbjct: 1   ESPIKLHTEAA-GSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 318 -----GAAVTLQNMDGKTPIDVAKLNSQHD 342
                GA V   + D  TP+ +A L  +  
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 230 ESIVH-HTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL------ 282
           ES +  HT + G     +       +   +    RT LH+       + ++ L+      
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 283 --EAGANVDALDKNKNTALHYAAGYGRKEC 310
              AGA+V+A+D ++NT L  A    R+  
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRL 89

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 10/58 (17%), Positives = 18/58 (31%)

Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA 284
            + ++ +   A  G  E +   +  GA  +  D+   TA   A          I    
Sbjct: 219 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.2 bits (87), Expect = 9e-04
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 205 AVGGDATTSA-DNAGADEAEEVGNEDESIVHHTASVGDAE--------GLKNALAAGADK 255
           A G  A T        +  +     + +++H  AS   AE          K  +AAGAD 
Sbjct: 10  AAGSYAITEPITRESVNIIDP--RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 67

Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
           +  D +  T L  A      +    L++AGA+    +K++ +ALH AA       +  +L
Sbjct: 68  NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 127

Query: 316 ENG 318
            + 
Sbjct: 128 NST 130

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 84.8 bits (208), Expect = 2e-19
 Identities = 30/98 (30%), Positives = 49/98 (50%)

Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
                 G TALH A   G  +  ++L++A  +V+  D +  T LH AA +G++E   +L+
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 316 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 353
           EN   +   N  G+T  DVA  +    + +L +K   L
Sbjct: 253 ENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 73.2 bits (178), Expect = 2e-15
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 7/234 (2%)

Query: 95  HGANAEESIPQFDTTQYYSTMQ---QVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNP 151
            GA+   +     T  + + +     +++            +     P  +       + 
Sbjct: 62  RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI 121

Query: 152 TKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDAT 211
            +    +             P+    E      +    N + V  +        +     
Sbjct: 122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA 181

Query: 212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG 271
               N+G            + +H  A+ G  E LK  + A  D + +D +G T LH A  
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241

Query: 272 YGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQN 325
           +G+ +  +IL+E   +++A++K   TA   A     ++ +  L E      L +
Sbjct: 242 WGKEEACRILVENLCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.7 bits (135), Expect = 9e-10
 Identities = 25/93 (26%), Positives = 42/93 (45%)

Query: 255 KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALL 314
           K +   +       AC  G+ +    LLE GA+++  + +  TALH A      + V  L
Sbjct: 33  KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL 92

Query: 315 LENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +ENGA +   + +G  P+  A      D+ + L
Sbjct: 93  VENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.8 bits (112), Expect = 7e-07
 Identities = 39/118 (33%), Positives = 58/118 (49%)

Query: 225 VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA 284
           V  +D ++     S GD E +   L  GAD +  + +G TALH AC    V   + L+E 
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 285 GANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD 342
           GAN++  D      LH AA  G  +    L+  GA V   N +G TP+D+A+  +  +
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 21/81 (25%), Positives = 33/81 (40%)

Query: 267 HFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNM 326
                       Q L     N     K+  TALH AA  G  E + LL++    V +++ 
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230

Query: 327 DGKTPIDVAKLNSQHDVLKLL 347
           DG TP+  A    + +  ++L
Sbjct: 231 DGWTPLHAAAHWGKEEACRIL 251

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 76.0 bits (185), Expect = 9e-17
 Identities = 35/96 (36%), Positives = 48/96 (50%)

Query: 253 ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVA 312
           AD +  D+ G+TALH+A      +   ILL   AN DA D    T L  AA  G  E   
Sbjct: 114 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASK 173

Query: 313 LLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
            LL+N A   + +   + P DVA     HD+++LL+
Sbjct: 174 ALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 66.0 bits (159), Expect = 3e-13
 Identities = 22/92 (23%), Positives = 39/92 (42%)

Query: 223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL 282
               N  ++ +H  A+V + E +   L   A++D +D +  T L  A   G  + ++ LL
Sbjct: 117 NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL 176

Query: 283 EAGANVDALDKNKNTALHYAAGYGRKECVALL 314
           +  AN +  D         A+     + V LL
Sbjct: 177 DNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.6 bits (119), Expect = 4e-08
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 276 KCAQILLEAGANVDA-LDKNKNTALHYAAGYGRKECVALL 314
           +    LL  GA ++A +DK   T+LH AA + R +    L
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 242 AEGLKNALAAGADKDE-EDSEGRTALHFACGYGEVKCAQIL 281
           A+ + + LA GA+ +   D  G T+LH A  +     A+ L
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 308 KECVALLLENGAAV-TLQNMDGKTPIDVAKLNSQHDVLKLL 347
            + ++ LL  GA +    +  G+T + +A   ++ D  K L
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 77.2 bits (189), Expect = 2e-16
 Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 10/183 (5%)

Query: 173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESI 232
            L  +      A+  +      ++++ + + L                +A + G + E I
Sbjct: 36  ELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY--YAHYNRNAKQLWSDAHKKGIKSEVI 93

Query: 233 VHHTASVGDAEGLKNA---LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
               A  G +  L      L +        +E   A   A   G +     L E      
Sbjct: 94  CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI 153

Query: 290 ALDKNK--NTALHYAAGYGRKECVALLLENGAAV---TLQNMDGKTPIDVAKLNSQHDVL 344
                     A   AA  G    +  L E         +Q  +       A     H+V+
Sbjct: 154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 213

Query: 345 KLL 347
             L
Sbjct: 214 NFL 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 56.8 bits (136), Expect = 1e-09
 Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 5/79 (6%)

Query: 250 AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-----NVDALDKNKNTALHYAAG 304
                +  +       L        +   + LL             +  + N  L  A  
Sbjct: 267 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 326

Query: 305 YGRKECVALLLENGAAVTL 323
            G +   ALLL   + + L
Sbjct: 327 LGNQGACALLLSIPSVLAL 345

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 17/155 (10%), Positives = 29/155 (18%), Gaps = 23/155 (14%)

Query: 216 NAGADEAEEV--GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--- 270
                EA  +       +        G    +   L         +              
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPF 241

Query: 271 ------GYGEVKCAQILLEAGANVDALDKNKN-------TALHYAAGYGRKECVALLLEN 317
                    E+  A  L       D + K++          L         + +  LL  
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 301

Query: 318 GAAVTLQN-----MDGKTPIDVAKLNSQHDVLKLL 347
                L        D    + +A          LL
Sbjct: 302 PGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.5 bits (184), Expect = 5e-16
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 246 KNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL---EAGANVDALDKNKNTALHYA 302
                         +E  +  +   G  +    + L         ++A D N +T L+ A
Sbjct: 207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

Query: 303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
           A  G    V  LL+ GA   + N  G  P+D  
Sbjct: 267 ARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (171), Expect = 2e-14
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 215 DNAGADEAEEVGNEDESIVHHTASVGD---AEGLKNALAAGADKDEEDSEGRTALHFACG 271
                   +   NE ES  +           E L          + +DS G T L+ A  
Sbjct: 209 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 268

Query: 272 YGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
            G +     LL+ GA+    +K+    + + AG
Sbjct: 269 LGNISIVDALLDYGADPFIANKSGLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 5/158 (3%)

Query: 190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNAL 249
             K  L+   + +      +  TS +N  ++   E G+ ++   H +      E      
Sbjct: 34  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP 93

Query: 250 AAGADKDEE-DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA----AG 304
               + +   D  G T LH+      ++  + L++ G+N    D    + L  A      
Sbjct: 94  NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 153

Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD 342
           Y      ALL      + L++   +T +    + S   
Sbjct: 154 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 191

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 16/108 (14%)

Query: 256 DEEDSEGRTALHFACGYG-------------EVKCAQILLEAGANVDALDKNKNTALHYA 302
             EDS  RT LH                   ++    I+ +    + +    K +  +  
Sbjct: 171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK 230

Query: 303 AGYGRKECVALLLEN---GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            G  +   +  L         +  Q+ +G T +++A       ++  L
Sbjct: 231 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (167), Expect = 5e-14
 Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGAN---VDALDKNKNTALHYAAGYGRKECVALLL 315
             +G TALH A  +        LL   A    +D  +    TALH AA  G    V  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 316 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
             GA V +    G T + +A     H    +L
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 1e-13
 Identities = 18/58 (31%), Positives = 23/58 (39%)

Query: 263 RTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
           RT LH A         ++LL+AGA+  A      T L  A          LL  +GA 
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 9e-10
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 4/164 (2%)

Query: 185 MMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEG 244
           +            L +    +   DA+ +      D   +  +        +    + E 
Sbjct: 84  LACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHA--PAAVDSQPNPENEE 140

Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA-LDKNKNTALHYAA 303
                      + E+ +G T LH A  + + +  ++L +AGA+++        T LH A 
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200

Query: 304 GYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
                  + LLL+ GA  T +   G+TP+  A L     + +LL
Sbjct: 201 EAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (133), Expect = 1e-09
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 3/107 (2%)

Query: 225 VGNEDESIVHHTASVGDAEGLKNALAAGADK---DEEDSEGRTALHFACGYGEVKCAQIL 281
           V  + ++ +H          L   L   A     D ++  G+TALH A   GE    + L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 328
             AGA V   ++  +TALH A       C  +LL+   +      D 
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 1e-08
 Identities = 17/60 (28%), Positives = 22/60 (36%)

Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
            + +H       A  L+  L AGAD       GRT L  A        A++L   GA   
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 3e-13
 Identities = 28/80 (35%), Positives = 44/80 (55%)

Query: 266 LHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQN 325
           L  A     +   Q+LL+ GANV+A   + ++ALH A+G G    V  L+ +GA  +L+N
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 207

Query: 326 MDGKTPIDVAKLNSQHDVLK 345
               TP+ VA+     D+L+
Sbjct: 208 CHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 9e-12
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
           GA+ + +   G +ALH A G G +   + L+ +GA+    + + +T L  A      + +
Sbjct: 167 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-07
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 294 NKNTALHYAAGYGRKECVALLL----ENGAAVTLQNMDGKTPIDVAKLNSQH 341
           + +T LH A   G    V  L+    + G  + + N   +TP+ +A + +  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 53

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 8/47 (17%), Positives = 18/47 (38%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQ 279
           +H  +  G    ++  + +GAD   ++    T L  A     +   +
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 228 ED-ESIVHHTASVGDAEG----LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL 282
           ED ++ +H     G+       +      G + D  ++  +T LH A         ++L+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 283 EAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA 319
            AGA+  ALD++  TA H A  +    C+  LL++ A
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 97

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 8e-12
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEE------DSEGRTALHFAC---GYGEVKCAQILLEA 284
                  D  GL  A A G D  E+           TALH A        +     L++ 
Sbjct: 11  CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 70

Query: 285 GANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL 344
             N+D      +TALHY       EC+ LLL   A++ + N  G+TP+D+AK        
Sbjct: 71  SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE 130

Query: 345 KLLEK 349
           +LL +
Sbjct: 131 ELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 8/46 (17%), Positives = 15/46 (32%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNT 297
            A  +  +  G T L  A       C ++L +A +       +   
Sbjct: 104 KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEY 149

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 3e-11
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 259 DSEGRTALHFACGYGEVKCAQILLEA-GANVDALDKNKNTALHYAAGYGRKECVALLLEN 317
           D +G T L  A   G    A +L+E  GA  D +D     A   A     ++     L N
Sbjct: 169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 225

Query: 318 GA 319
             
Sbjct: 226 VV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 8e-11
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN-VDALDKNKNTALHYAAGYGR 307
           +  GA    +D   +  LH A   G +K  ++L   G + V+  DK   T L +A   G 
Sbjct: 125 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 184

Query: 308 KECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
            +   LL+E  GA   L +  G    DVA       V K  
Sbjct: 185 GDAAVLLVEKYGAEYDLVDNKGAKAEDVA---LNEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 1e-10
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 264 TALHFACGYGEVKCAQILLEA-GANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
             LH AC   E    Q LL +  + +   D++    LH++  +   E  + LL   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 7e-08
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 296 NTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQH 341
           N  LH A        V  LL    + +  ++ DG+ P+  +     H
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 234 HHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVKCAQILLEAG 285
           H      +   ++  L +  +   ++D +GR  LH++  +   +    LL   
Sbjct: 5   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 7e-11
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 2/77 (2%)

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA- 319
            GRTALH A          +LL+ GA+V+ +     +      G         L +    
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

Query: 320 -AVTLQNMDGKTPIDVA 335
               L   + +   D  
Sbjct: 204 NLQMLPESEDEESYDTE 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 3e-08
 Identities = 12/79 (15%), Positives = 25/79 (31%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
           GAD   +      + +H    + + + +   L  GAD +    +G +      G    + 
Sbjct: 134 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRI 193

Query: 278 AQILLEAGANVDALDKNKN 296
            Q L +       +     
Sbjct: 194 QQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 5e-08
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 263 RTALHFACGYGEVKCAQILLEAGANV-DALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
            T LH A  +G +   ++L+  GA+V      N  TALH A      + V+LLL+ GA V
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 171

Query: 322 TLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
                 G +P  +        + + L +
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 7e-08
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 261 EGRTALHFACGYGEVKCA----QILLEAGANVDALDKNKNTALHYA 302
           +G + LH A  + E        + +    A ++  +  + T LH A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 5e-06
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 294 NKNTALHYAAGYGR----KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 341
           + ++ LH A  +       E +  +  + A +  QN   +TP+ +A + +Q 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP 52

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (126), Expect = 2e-09
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
           GAD + +D    TALH+A  +   +  ++L++ GA+V    K   TA   +   G ++  
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

Query: 312 ALL 314
            +L
Sbjct: 150 EIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (102), Expect = 4e-06
 Identities = 32/85 (37%), Positives = 49/85 (57%)

Query: 264 TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTL 323
           T LH A   G     ++LL+ GA+V+A D  K TALH+A  +  +E V LL++ GA V  
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128

Query: 324 QNMDGKTPIDVAKLNSQHDVLKLLE 348
           Q+   KT  D++  N   D+ ++L+
Sbjct: 129 QSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 296 NTALHYAAGYGRKECVALLLENGAAVTLQNM 326
              L  AA  G+ + V +L+ NGA  T   +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTTDWL 33

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 7/41 (17%), Positives = 12/41 (29%)

Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY 301
           +    L  A   G+    +IL+  GA         +     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLA 41

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 1e-08
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
           GAD +  D  G   +H A   G       L  A +++   D    T L  A   G ++ V
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAVVSFL-AAESDLHRRDARGLTPLELALQRGAQDLV 149

Query: 312 ALLLE 316
            +L  
Sbjct: 150 DILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 34/147 (23%)

Query: 234 HHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVKCAQILLE--------- 283
              A+ GD + ++  L       D  +  G+TAL            ++L +         
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDT 66

Query: 284 -----------------------AGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
                                   GA+V+  D      +H A   G    V+ L    + 
Sbjct: 67  SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD 125

Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
           +  ++  G TP+++A      D++ +L
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 10/33 (30%), Positives = 12/33 (36%)

Query: 251 AGADKDEEDSEGRTALHFACGYGEVKCAQILLE 283
           A +D    D+ G T L  A   G      IL  
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 6e-07
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENG 318
           NV   +   +TA   A  YGR E V+L+  NG
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 3e-06
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 264 TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY 301
             L  A   G+++    LL+   NV+A +    TAL  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 40

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 5e-06
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGK 329
             L  AA  G  E +  LL+N   V  QN  G+
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 6e-05
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAG 285
              + +G TA   A  YG  +   ++   G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGY--------------------- 272
              A+ GD E L + L    + + ++  GRTAL                           
Sbjct: 6   ASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRT 65

Query: 273 -----------GEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK-ECVALLLENGAA 320
                      G +   Q LLE  A+V+  D   N  LH AA  G       L+    + 
Sbjct: 66  GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 125

Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
           V  +N  G T  D+A+L  +++V+ L++ 
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKN---TALHYAAGYGRKECVALLLENG 318
           G T LH A     V+  + L+E+GA V A+  +              G  +C   L    
Sbjct: 67  GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 126

Query: 319 A 319
            
Sbjct: 127 E 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.9
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.87
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.87
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.87
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.86
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.86
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.86
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.85
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.84
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.8
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.8
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.79
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.77
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.76
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.72

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.1e-28  Score=193.06  Aligned_cols=121  Identities=26%  Similarity=0.390  Sum_probs=115.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCC
Q 018595          229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN-TALHYAAGYGR  307 (353)
Q Consensus       229 g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~-TpLh~A~~~g~  307 (353)
                      +.++||+|+..|++++|++|+++|++++.++..|.||||+| ..|+.+++++|+++|++++.++..|. ||||+|+.+|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            56899999999999999999999999999999999999976 47999999999999999999999876 69999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       308 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      .+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+..
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=8.2e-28  Score=191.41  Aligned_cols=115  Identities=31%  Similarity=0.460  Sum_probs=108.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 018595          230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKE  309 (353)
Q Consensus       230 ~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~  309 (353)
                      .|||++|+..|+.++|++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Q 018595          310 CVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  348 (353)
Q Consensus       310 ~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  348 (353)
                      +|++|+++|++++.+|.+|+||||+|..    +.++.|+
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~~----~~i~~LL  117 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATDN----QAIKALL  117 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCSS----TTTGGGG
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHhH----HHHHHhc
Confidence            9999999999999999999999999843    3455554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.4e-25  Score=197.53  Aligned_cols=93  Identities=28%  Similarity=0.389  Sum_probs=85.5

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Q 018595          259 DSEGRTALHFACGYGEVKCAQILLEAGANVDAL-DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL  337 (353)
Q Consensus       259 d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~  337 (353)
                      +..|+||||+||..++.++|++|++.+++.+.. +..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       155 d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~  234 (255)
T d1oy3d_         155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL  234 (255)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             cccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            345788999999999999999999999888754 5679999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhcC
Q 018595          338 NSQHDVLKLLEKDA  351 (353)
Q Consensus       338 ~g~~~iv~~Ll~~~  351 (353)
                      +++.+++++|+++|
T Consensus       235 ~~~~~i~~~Ll~~G  248 (255)
T d1oy3d_         235 RPNPILARLLRAHG  248 (255)
T ss_dssp             SSCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHcC
Confidence            99999999999987

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-26  Score=186.04  Aligned_cols=119  Identities=26%  Similarity=0.310  Sum_probs=112.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 018595          231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKEC  310 (353)
Q Consensus       231 t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~  310 (353)
                      ++|+.||..|+.++|++|+++|+|++.+|..|+||||+||..|+.+++++|++.|++++.+|.+|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCcCC-CCCCHHHHH--HHcCcHHHHHHHHh
Q 018595          311 VALLLENGAAVTLQNM-DGKTPIDVA--KLNSQHDVLKLLEK  349 (353)
Q Consensus       311 v~~Ll~~gad~~~~d~-~g~TpL~~A--~~~g~~~iv~~Ll~  349 (353)
                      |++|+++|++++..+. .|+||++++  ..+|+.+++++|+.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            9999999999998775 589998876  56789999999985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.7e-25  Score=192.97  Aligned_cols=136  Identities=32%  Similarity=0.361  Sum_probs=125.9

Q ss_pred             hhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 018595          213 SADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD  292 (353)
Q Consensus       213 ~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d  292 (353)
                      .+...+.+. ...+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+..|.+++.+|
T Consensus        88 ~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d  166 (223)
T d1uoha_          88 ALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD  166 (223)
T ss_dssp             HHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             HHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeecc
Confidence            334444443 5568889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       293 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      ..|+||||+|+..|+.++|++|+++|++++.+|.+|+||||+|. .|+.+++++|++.
T Consensus       167 ~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~~  223 (223)
T d1uoha_         167 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVEG  223 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHCC
T ss_pred             CCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccCC
Confidence            99999999999999999999999999999999999999999985 6999999999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=1.4e-25  Score=194.05  Aligned_cols=136  Identities=33%  Similarity=0.438  Sum_probs=123.9

Q ss_pred             hhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-------------------------------
Q 018595          212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS-------------------------------  260 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~-------------------------------  260 (353)
                      ..+...|.++....+.+|.||||+||..|+.+++++|+..|++++.++.                               
T Consensus         6 ~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (209)
T d1ot8a_           6 SDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNA   85 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTC
T ss_pred             HHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            3445566666556688899999999999999999999998887765543                               


Q ss_pred             ------------------------------------CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 018595          261 ------------------------------------EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG  304 (353)
Q Consensus       261 ------------------------------------~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~  304 (353)
                                                          .|+||||+++..+...+++.|+..+.+++..|..|.||||+|+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~  165 (209)
T d1ot8a_          86 RMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAR  165 (209)
T ss_dssp             CCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhcc
Confidence                                                57899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Q 018595          305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL  347 (353)
Q Consensus       305 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~L  347 (353)
                      .|+.++|++|+++|++++.+|..|+||||+|+.+|+.+||++|
T Consensus       166 ~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         166 EGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-25  Score=184.32  Aligned_cols=126  Identities=21%  Similarity=0.352  Sum_probs=120.2

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|+||||+|+ .|+.+++++|++.+.+++..+..|.+||++++..++.+++++++++|++++.+|..|+||||+|
T Consensus        30 n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A  108 (156)
T d1bd8a_          30 DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA  108 (156)
T ss_dssp             TCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeeccc
Confidence            556788999999986 5899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      |..|+.+++++|+ .|++++.+|.+|+||||+|+.+|+.+++++|++|
T Consensus       109 ~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         109 VQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999887 7899999999999999999999999999999987

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.8e-24  Score=186.87  Aligned_cols=125  Identities=34%  Similarity=0.423  Sum_probs=112.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 018595          228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR  307 (353)
Q Consensus       228 ~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~  307 (353)
                      .+.+++++++..|+.+++++|++.|++++..|..|+||||+|+.+|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus        69 ~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~  148 (223)
T d1uoha_          69 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN  148 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCC
Confidence            34455555555556667777777888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          308 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       308 ~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      .+++++|++.|++++.+|.+|+||||+|+.+|+.++|++|+++|.
T Consensus       149 ~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga  193 (223)
T d1uoha_         149 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA  193 (223)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999998763

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.2e-24  Score=177.74  Aligned_cols=119  Identities=30%  Similarity=0.442  Sum_probs=110.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          232 IVHHTASVGDAEGLKNALAAGADKDEE------DSEGRTALHFACGY---GEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       232 ~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~------d~~g~t~Lh~Aa~~---g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      .|+.|+..+++..+..++..|+|++..      +..|+||||+|+..   ++.++|++|+++|++++.+|..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            466788899999999999999887654      67899999999974   688999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      |..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.+++++|++.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999984

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.8e-24  Score=175.72  Aligned_cols=151  Identities=26%  Similarity=0.331  Sum_probs=134.4

Q ss_pred             HHHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 018595          183 SAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEG  262 (353)
Q Consensus       183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g  262 (353)
                      .+.+...++.++++.|                ...|.++ ...+..|.||||+|+ .|+.+++++|++.|++++.++..|
T Consensus         5 Lh~Aa~~g~~~~v~~L----------------l~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~   66 (156)
T d1ihba_           5 LASAAARGDLEQLTSL----------------LQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTG   66 (156)
T ss_dssp             HHHHHHHTCHHHHHHH----------------TTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHcCCHHHHHHH----------------HHCCCCc-CccCCcccccccccc-cccccccccccccccccccccccC
Confidence            3445555566666555                3445554 556888999999885 799999999999999999999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCcH
Q 018595          263 RTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGA-AVTLQNMDGKTPIDVAKLNSQH  341 (353)
Q Consensus       263 ~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~g~TpL~~A~~~g~~  341 (353)
                      .++|++++..+..++++.|+..+.+++..|..|.+|||+|+..++.+++++|+++|+ +++.+|.+|.||||+|+.+++.
T Consensus        67 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~  146 (156)
T d1ihba_          67 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN  146 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999999999999999999999999999999999999876 8999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 018595          342 DVLKLLEKDA  351 (353)
Q Consensus       342 ~iv~~Ll~~~  351 (353)
                      +++++|+++|
T Consensus       147 ~iv~~Ll~~G  156 (156)
T d1ihba_         147 EVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            9999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=4.1e-23  Score=185.50  Aligned_cols=161  Identities=22%  Similarity=0.265  Sum_probs=124.8

Q ss_pred             CHHHHHHHhcCcchHHHHHHHhccccCCchhhhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 018595          181 GPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS  260 (353)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~  260 (353)
                      .+.+++...++.++++.|.....        ..+...|.++ +..+..|.||||+|+..|+.++|++|+++|++++.+|.
T Consensus        35 T~Lh~A~~~g~~~~v~~Ll~~~~--------~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~  105 (277)
T d2fo1e1          35 TVLHWIASNSSAEKSEDLIVHEA--------KECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK  105 (277)
T ss_dssp             CHHHHHHCTTCCSCCTTHHHHHH--------HHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             cHHHHHHHcCCHHHHHHHHhcch--------hHHHHcCCCc-cccCCCCCeeeccccccccccccccccccccccccccc
Confidence            44555555555555555432111        1122344444 45688999999999999999999999999999998887


Q ss_pred             CCCcHHHHHHhc--------------------------------------------------------------------
Q 018595          261 EGRTALHFACGY--------------------------------------------------------------------  272 (353)
Q Consensus       261 ~g~t~Lh~Aa~~--------------------------------------------------------------------  272 (353)
                      .|.||||+|+..                                                                    
T Consensus       106 ~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (277)
T d2fo1e1         106 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY  185 (277)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSC
T ss_pred             cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccccccc
Confidence            666666555544                                                                    


Q ss_pred             ------------CCHHHHHHH-HHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Q 018595          273 ------------GEVKCAQIL-LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  339 (353)
Q Consensus       273 ------------g~~~~v~~L-l~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g  339 (353)
                                  ++.++++++ ...+.+++.+|..|+||||+||..|+.++|++|+++|++++.+|.+|+||||+|+.+|
T Consensus       186 ~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             CCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcC
Confidence                        444445543 3556778888999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhc
Q 018595          340 QHDVLKLLEKD  350 (353)
Q Consensus       340 ~~~iv~~Ll~~  350 (353)
                      +.++|++|+++
T Consensus       266 ~~~iv~lL~~c  276 (277)
T d2fo1e1         266 HHNIVDIFDRC  276 (277)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHHh
Confidence            99999999974

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.3e-23  Score=169.79  Aligned_cols=124  Identities=33%  Similarity=0.416  Sum_probs=117.5

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 018595          225 VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG  304 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~  304 (353)
                      .+..|+||||+|+..++.+++..++.........+..+.+++|+++...+.+++++|+.+|++++.+|..|+||||+||.
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~  109 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhh
Confidence            47789999999999999999999999888877778888999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Q 018595          305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  348 (353)
Q Consensus       305 ~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  348 (353)
                      .|+.+||++|+++|++++.+|.+|.||||+|+.+|+.+++++|.
T Consensus       110 ~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_         110 HNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             cchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence            99999999999999999999999999999999999999999873

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.1e-23  Score=187.51  Aligned_cols=133  Identities=29%  Similarity=0.395  Sum_probs=116.2

Q ss_pred             cchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCC------------
Q 018595          219 ADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA------------  286 (353)
Q Consensus       219 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga------------  286 (353)
                      .......+..|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|++.+.            
T Consensus        35 ~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  114 (255)
T d1oy3d_          35 HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT  114 (255)
T ss_dssp             SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------
T ss_pred             cccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhh
Confidence            34456677889999999999999999999999999999999999999999999999999999876532            


Q ss_pred             -----------------------------------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCC
Q 018595          287 -----------------------------------NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTL-QNMDGKT  330 (353)
Q Consensus       287 -----------------------------------di~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~T  330 (353)
                                                         +++.+|..|+||||+||.+++.+++++|++++++.+. .+..|+|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~T  194 (255)
T d1oy3d_         115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT  194 (255)
T ss_dssp             -----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             HHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccc
Confidence                                               1345677899999999999999999999999999885 4678999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcC
Q 018595          331 PIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       331 pL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |||+|+..|+.+++++|+++|
T Consensus       195 pL~~A~~~~~~~~v~~Ll~~g  215 (255)
T d1oy3d_         195 PLHLAVEAQAASVLELLLKAG  215 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccccccccHHHHHHHHHHCC
Confidence            999999999999999999986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.1e-22  Score=190.60  Aligned_cols=126  Identities=31%  Similarity=0.377  Sum_probs=121.1

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA  302 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A  302 (353)
                      ...+..|.|+|+.|+..++.+++++|++.|++++..+..+.||||+++..++.++++++++.|++++.+|.+|+||||+|
T Consensus       258 ~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A  337 (408)
T d1n11a_         258 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA  337 (408)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHH
Confidence            34467889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Q 018595          303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  348 (353)
Q Consensus       303 ~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  348 (353)
                      +.+|+.++|++|+++||+++.+|.+|+||||+|+.+|+.++|++|.
T Consensus       338 ~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         338 AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999774

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.7e-21  Score=170.45  Aligned_cols=128  Identities=29%  Similarity=0.312  Sum_probs=79.2

Q ss_pred             hhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC---CCCC-----------------------------------C
Q 018595          222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE---DSEG-----------------------------------R  263 (353)
Q Consensus       222 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~---d~~g-----------------------------------~  263 (353)
                      ....+.+|+||||+|+..|+.+++++|++.|++++..   +..|                                   .
T Consensus        27 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (229)
T d1ixva_          27 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV  106 (229)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSC
T ss_pred             ccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3556788899999999999999999999888876532   2222                                   2


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHH
Q 018595          264 TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPIDVAKLNSQHD  342 (353)
Q Consensus       264 t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~~~  342 (353)
                      |++++++..++.+++++|+..|.+.+.+|..|+||||+|+.+|+.+++++|++.| .+++.+|.+|+||||+|+.+|+.+
T Consensus       107 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~  186 (229)
T d1ixva_         107 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD  186 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHH
Confidence            3333333444444555555555555555555666666666666666666666554 455556666666666666666666


Q ss_pred             HHHHHHh
Q 018595          343 VLKLLEK  349 (353)
Q Consensus       343 iv~~Ll~  349 (353)
                      +|++|++
T Consensus       187 ~v~~Ll~  193 (229)
T d1ixva_         187 AAVLLVE  193 (229)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666553

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.9e-23  Score=178.30  Aligned_cols=129  Identities=28%  Similarity=0.375  Sum_probs=101.8

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHH--------------------------
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK--------------------------  276 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~--------------------------  276 (353)
                      +..+..|+||||+||..|+.+++++|++.|++++.+|..|.||||+++..++.+                          
T Consensus        33 n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  112 (221)
T d1iknd_          33 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  112 (221)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             ccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            345667888888888888888888888888887777776666665555555544                          


Q ss_pred             -------------HHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Q 018595          277 -------------CAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD  342 (353)
Q Consensus       277 -------------~v~~Ll~~gadi~~~d-~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~  342 (353)
                                   ++++|+..|+.++..+ .+|+||||+|+.+|+.+++++|+++|+|++.+|.+|+||||+|+.+++.+
T Consensus       113 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~  192 (221)
T d1iknd_         113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR  192 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH
T ss_pred             hhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHH
Confidence                         4555555555665554 56999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 018595          343 VLKLLEKDA  351 (353)
Q Consensus       343 iv~~Ll~~~  351 (353)
                      ++++|++..
T Consensus       193 ~~~~l~~~~  201 (221)
T d1iknd_         193 IQQQLGQLT  201 (221)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHHcC
Confidence            999998753

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.7e-22  Score=163.50  Aligned_cols=120  Identities=29%  Similarity=0.382  Sum_probs=116.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 018595          231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKEC  310 (353)
Q Consensus       231 t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~  310 (353)
                      ++||+||..|+.++|++|+++|+|++.+|..|+||||+|+ .|+.+++++|+++|++++.++..|.++|++++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999876 799999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          311 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       311 v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +.+|+..+.+++..|..|.+|||+|+..++.+++++|++++
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  122 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  122 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999998865

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.5e-22  Score=170.33  Aligned_cols=123  Identities=29%  Similarity=0.358  Sum_probs=109.8

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC------------------------------------------
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS------------------------------------------  260 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~------------------------------------------  260 (353)
                      +..+..|+||||+|+..|+.+++++|++.|++.+..+.                                          
T Consensus        34 n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (228)
T d1k1aa_          34 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA  113 (228)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH
T ss_pred             CccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhccccccccccccccccccc
Confidence            45578899999999999999999999998887655432                                          


Q ss_pred             -----------------------------CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 018595          261 -----------------------------EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV  311 (353)
Q Consensus       261 -----------------------------~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v  311 (353)
                                                   .+.++||+|+..+...+++++++.|.+++.+|..|.||||+|+.+|+.+++
T Consensus       114 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v  193 (228)
T d1k1aa_         114 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV  193 (228)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred             cccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHH
Confidence                                         367888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Q 018595          312 ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK  345 (353)
Q Consensus       312 ~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~  345 (353)
                      ++|+++|+|++.+|.+|+||||+|+.+|+.++|+
T Consensus       194 ~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         194 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999999999999999999999999988875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.6e-21  Score=166.00  Aligned_cols=126  Identities=22%  Similarity=0.263  Sum_probs=115.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC-----------
Q 018595          227 NEDESIVHHTASVGDAEGLKNALA----AGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL-----------  291 (353)
Q Consensus       227 ~~g~t~Lh~Aa~~g~~~~v~~Ll~----~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~-----------  291 (353)
                      ++|.||||+||..|+.+++++|++    .|++++.+|..|+||||+||..|+.+++++|+++|++++..           
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            369999999999999999998875    79999999999999999999999999999999999865443           


Q ss_pred             ------------------------------------------------------------CCCCCcHHHHHHHcCCHHHH
Q 018595          292 ------------------------------------------------------------DKNKNTALHYAAGYGRKECV  311 (353)
Q Consensus       292 ------------------------------------------------------------d~~G~TpLh~A~~~g~~~~v  311 (353)
                                                                                  +..|.++|++|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                        22577889999999999999


Q ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          312 ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       312 ~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ++++++|.+++.+|..|.||||+|+.+|+.+++++|+++|.
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga  201 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA  201 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999873

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-21  Score=161.95  Aligned_cols=121  Identities=26%  Similarity=0.376  Sum_probs=114.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 018595          230 ESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK  308 (353)
Q Consensus       230 ~t~Lh~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~  308 (353)
                      ...|+.||..|++++|+.|+.. +++++..|..|+||||+|+ .|+.+++++|++.+++++..+..|.+||++++..++.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            3569999999999999999986 7899999999999999886 5899999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       309 ~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      +++++++++|++++.+|..|+||||+|+..|+.+++++|++++
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~  124 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES  124 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTS
T ss_pred             cccccccccccccccccCCCCeeeccccccccccccccccccc
Confidence            9999999999999999999999999999999999999998764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-21  Score=183.88  Aligned_cols=140  Identities=30%  Similarity=0.368  Sum_probs=98.9

Q ss_pred             hhhhhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC----
Q 018595          212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN----  287 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad----  287 (353)
                      ..+...|.++ +..+..|.||||+||..|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|+..+.+    
T Consensus        17 ~~Ll~~g~~i-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~   95 (408)
T d1n11a_          17 KNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA   95 (408)
T ss_dssp             HHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC
T ss_pred             HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccc
Confidence            4444445443 34456666777777777777777777777777766666677777777777776666666654332    


Q ss_pred             -----------------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Q 018595          288 -----------------------------VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN  338 (353)
Q Consensus       288 -----------------------------i~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~  338 (353)
                                                   .+..+..+.++|++|+..++.+++++|+++|++++..+.+|.+|||+|+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~  175 (408)
T d1n11a_          96 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH  175 (408)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT
T ss_pred             cccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHc
Confidence                                         233345566666777777777788888888889999999999999999999


Q ss_pred             CcHHHHHHHHhcCC
Q 018595          339 SQHDVLKLLEKDAF  352 (353)
Q Consensus       339 g~~~iv~~Ll~~~~  352 (353)
                      |+.+++++|+++|.
T Consensus       176 ~~~~~~~~Ll~~g~  189 (408)
T d1n11a_         176 NNLDIVKLLLPRGG  189 (408)
T ss_dssp             TCHHHHHHHGGGTC
T ss_pred             CCHHHHHHHHhcCC
Confidence            99999999988753

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.86  E-value=7.7e-21  Score=172.17  Aligned_cols=135  Identities=28%  Similarity=0.411  Sum_probs=114.8

Q ss_pred             cCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC-----
Q 018595          217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL-----  291 (353)
Q Consensus       217 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~-----  291 (353)
                      .|.++ +..+..|.||||+|+..|+.++|++|++.|++....+..+.+|||+++..++.+++++|+++|+..+..     
T Consensus        62 ~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  140 (291)
T d1s70b_          62 RGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD  140 (291)
T ss_dssp             HCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCC-CccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCc
Confidence            34443 456788999999999999999999999999998888888999999999999999999998887654332     


Q ss_pred             -------------------------------------------------------CCCCCcHHHHHHHcCCHHHHHHHHH
Q 018595          292 -------------------------------------------------------DKNKNTALHYAAGYGRKECVALLLE  316 (353)
Q Consensus       292 -------------------------------------------------------d~~G~TpLh~A~~~g~~~~v~~Ll~  316 (353)
                                                                             +..|.||||+|+..|+.+++++|++
T Consensus       141 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  220 (291)
T d1s70b_         141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ  220 (291)
T ss_dssp             CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccc
Confidence                                                                   3457788899999999999999999


Q ss_pred             CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          317 NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       317 ~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +|++++.++.+|+||||+|+..|+.++|++|+++|.
T Consensus       221 ~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga  256 (291)
T d1s70b_         221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC  256 (291)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999999999999999999999999998873

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.2e-21  Score=172.90  Aligned_cols=129  Identities=28%  Similarity=0.281  Sum_probs=118.2

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcC----CHHHHHHHHHcCCCCCCCCCCCCc
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYG----EVKCAQILLEAGANVDALDKNKNT  297 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-g~d~~~~d~~g~t~Lh~Aa~~g----~~~~v~~Ll~~gadi~~~d~~G~T  297 (353)
                      ......|.||||+|+..|+.+++++|++. |++++..+..|.++++.+...+    ...++++|+++|++++.+|..|.|
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t  221 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT  221 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCC
Confidence            44567799999999999999999999975 8999999999999888765543    457999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          298 ALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       298 pLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |||+|+..|+.++|++|++ .|++++.+|.+|+||||+|+.+|+.++|++|+++|
T Consensus       222 ~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999999998 49999999999999999999999999999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.86  E-value=4.9e-22  Score=178.34  Aligned_cols=126  Identities=30%  Similarity=0.365  Sum_probs=106.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHH--------HHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 018595          227 NEDESIVHHTASVGDAEGLKNA--------LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA  298 (353)
Q Consensus       227 ~~g~t~Lh~Aa~~g~~~~v~~L--------l~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~Tp  298 (353)
                      ..|+||||+||..|+.++|+.|        ++.|+|+|.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccccccccc
Confidence            4699999999999999888776        56799999999999999999999999999999999999999888777777


Q ss_pred             HHHHHHcCCH----------------------------------------------------------------------
Q 018595          299 LHYAAGYGRK----------------------------------------------------------------------  308 (353)
Q Consensus       299 Lh~A~~~g~~----------------------------------------------------------------------  308 (353)
                      ||+|+..++.                                                                      
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence            7776655544                                                                      


Q ss_pred             ----------HHHHHH-HHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          309 ----------ECVALL-LENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       309 ----------~~v~~L-l~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                                +++.++ ...+.+++.+|..|+||||+|+..|+.++|++|+++|.
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga  245 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA  245 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence                      344332 23455667789999999999999999999999999873

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=5.5e-22  Score=182.22  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=47.5

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCC
Q 018595          224 EVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (353)
Q Consensus       224 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~  274 (353)
                      ..|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+||..++
T Consensus       102 ~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_         102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhccc
Confidence            347889999999999999999999999999999999999999999998664

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=1.9e-23  Score=196.09  Aligned_cols=129  Identities=19%  Similarity=0.119  Sum_probs=112.0

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC--CCCc
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKN---ALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK--NKNT  297 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~---Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~--~G~T  297 (353)
                      ...+..|.|+||+||..|+.+++++   |+..|++++.+|..|+||||+||..|+.++|++|++.|++++..+.  .|+|
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH  163 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCC
Confidence            3457789999999999999877765   7899999999999999999999999999999999999999988763  5999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          298 ALHYAAGYGRKECVALLLENGAAV---TLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       298 pLh~A~~~g~~~~v~~Ll~~gad~---~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      |||+||.+|+.+||++|++.|++.   +..+.+|.||+++|+.+|+.++|++|+++|
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence            999999999999999999999865   344566788889999999999999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=2.6e-21  Score=169.20  Aligned_cols=127  Identities=25%  Similarity=0.269  Sum_probs=118.5

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAG-ANVDALDKNKNTALHY  301 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g-adi~~~d~~G~TpLh~  301 (353)
                      ...+..+.|+++.++..++.++++.|+..|.+.+.+|..|+||||+|+.+|+.+++++|++.| .+++.+|..|+||||+
T Consensus        99 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~  178 (229)
T d1ixva_          99 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  178 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             cccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhh
Confidence            344677899999999999999999999999999999999999999999999999999999987 6889999999999999


Q ss_pred             HHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          302 AAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      |+.+|+.++|++|++ .|++++.+|.+|+||||+|+.   .+++++|+++|.
T Consensus       179 A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~  227 (229)
T d1ixva_         179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVV  227 (229)
T ss_dssp             HHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCC
T ss_pred             hcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCC
Confidence            999999999999997 599999999999999999984   589999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.4e-21  Score=158.69  Aligned_cols=96  Identities=21%  Similarity=0.367  Sum_probs=90.6

Q ss_pred             cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          225 VGNEDESIVHHTASV---GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       225 ~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      .+..|+||||+|+..   |+.++|++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  120 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  120 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHH
Confidence            356789999999975   67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCC
Q 018595          302 AAGYGRKECVALLLENGAA  320 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~~gad  320 (353)
                      |+.+|+.+++++|++.++.
T Consensus       121 A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         121 AKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHhCCC
Confidence            9999999999999998654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-21  Score=171.47  Aligned_cols=124  Identities=26%  Similarity=0.274  Sum_probs=102.0

Q ss_pred             CCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 018595          228 EDESIVHHTASVGDA----EGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAA  303 (353)
Q Consensus       228 ~g~t~Lh~Aa~~g~~----~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~  303 (353)
                      +|.||||+|+..|+.    ++++++...|+++|.+|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            589999999999985    4566677789999999999999999999999999999999999999999988888888888


Q ss_pred             HcCCHHHHHHHHHCC---------------------------------------CCCCCc-CCCCCCHHHHHHHcCcHHH
Q 018595          304 GYGRKECVALLLENG---------------------------------------AAVTLQ-NMDGKTPIDVAKLNSQHDV  343 (353)
Q Consensus       304 ~~g~~~~v~~Ll~~g---------------------------------------ad~~~~-d~~g~TpL~~A~~~g~~~i  343 (353)
                      ..++.+++++|+..+                                       +.++.. +.+|+||||+|+.+|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            777777666666544                                       344443 3579999999999999999


Q ss_pred             HHHHHhcC
Q 018595          344 LKLLEKDA  351 (353)
Q Consensus       344 v~~Ll~~~  351 (353)
                      +++|+++|
T Consensus       161 v~~Ll~~g  168 (221)
T d1iknd_         161 VSLLLKCG  168 (221)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHhcC
Confidence            99999876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.4e-20  Score=154.54  Aligned_cols=122  Identities=31%  Similarity=0.423  Sum_probs=116.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 018595          230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKE  309 (353)
Q Consensus       230 ~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~  309 (353)
                      .||||.||..|+.++|++||++|++++ .|..|+||||+|+..++.++++.++.........+..+.+++++++...+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            489999999999999999999999887 6899999999999999999999999999888888889999999999999999


Q ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 018595          310 CVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       310 ~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  352 (353)
                      ++++|+.+|++++.+|.+|+||||+|+..|+.+++++|+++|.
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga  124 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeecccccc
Confidence            9999999999999999999999999999999999999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=2.7e-21  Score=153.20  Aligned_cols=90  Identities=23%  Similarity=0.326  Sum_probs=87.7

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Q 018595          263 RTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD  342 (353)
Q Consensus       263 ~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~  342 (353)
                      .|||++||..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCC
Q 018595          343 VLKLLEKDAF  352 (353)
Q Consensus       343 iv~~Ll~~~~  352 (353)
                      ++++|+++|.
T Consensus        83 ~v~~Ll~~Ga   92 (118)
T d1myoa_          83 CVKLLLSKGA   92 (118)
T ss_dssp             HHHHHHTTCC
T ss_pred             hhhhhhcccc
Confidence            9999999873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.8e-21  Score=153.84  Aligned_cols=88  Identities=26%  Similarity=0.263  Sum_probs=86.2

Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Q 018595          264 TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV  343 (353)
Q Consensus       264 t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~i  343 (353)
                      ++||.||..|+.++|++|+++|+|++.+|..|+||||+||..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 018595          344 LKLLEKDA  351 (353)
Q Consensus       344 v~~Ll~~~  351 (353)
                      +++|+++|
T Consensus        83 v~~Ll~~g   90 (130)
T d1ycsb1          83 CKFLVESG   90 (130)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            99999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.3e-20  Score=145.88  Aligned_cols=93  Identities=19%  Similarity=0.207  Sum_probs=86.3

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGR-TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY  301 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~-t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~  301 (353)
                      +..+..|.|+||+|+ .|+.+++++|+++|++++.++..+. ||||+||..|+.++|++|+++|++++.+|..|+||||+
T Consensus        30 n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~  108 (125)
T d1bi7b_          30 NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL  108 (125)
T ss_dssp             TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHH
Confidence            455788999999774 7999999999999999999988775 69999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHH
Q 018595          302 AAGYGRKECVALLLE  316 (353)
Q Consensus       302 A~~~g~~~~v~~Ll~  316 (353)
                      |+.+|+.+|+++|++
T Consensus       109 A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         109 AEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCHHHHHHHSS
T ss_pred             HHHcCCHHHHHHHHh
Confidence            999999999999975

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.80  E-value=3e-21  Score=180.91  Aligned_cols=97  Identities=16%  Similarity=0.137  Sum_probs=82.2

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCC---CCCCCCCCc
Q 018595          223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEED--SEGRTALHFACGYGEVKCAQILLEAGANV---DALDKNKNT  297 (353)
Q Consensus       223 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d--~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi---~~~d~~G~T  297 (353)
                      +..+..|+||||+||..|+.++|++|++.|++++..+  ..|+||||+||..|+.++|++|++.|++.   +..+..|.|
T Consensus       120 n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t  199 (346)
T d2ajaa1         120 KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA  199 (346)
T ss_dssp             C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcc
Confidence            4456788999999999999999999999999988765  46999999999999999999999998764   334455778


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCC
Q 018595          298 ALHYAAGYGRKECVALLLENGA  319 (353)
Q Consensus       298 pLh~A~~~g~~~~v~~Ll~~ga  319 (353)
                      |||+|+.+|+.++|++|+++|+
T Consensus       200 ~l~~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         200 FRWAAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             HHHHHSTTCCHHHHHHHTTSHH
T ss_pred             hhhHHhhcCHHHHHHHHHhCCC
Confidence            8888999999999999987763

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.79  E-value=1.7e-19  Score=163.23  Aligned_cols=124  Identities=31%  Similarity=0.444  Sum_probs=118.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 018595          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY  305 (353)
Q Consensus       226 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~  305 (353)
                      ...+.|+|+.||..|++++|++||+.|+|+|.+|..|+||||+|+..|+.++|++|+++|++.+..+..+.|||++|+..
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Q 018595          306 GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  349 (353)
Q Consensus       306 g~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  349 (353)
                      ++.++++.|+++|+..+..|..+.+|+++|+..++.+++..|+.
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~  160 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhcccccc
Confidence            99999999999999999999999999999999999999888875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=2.1e-19  Score=154.58  Aligned_cols=111  Identities=32%  Similarity=0.436  Sum_probs=102.4

Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC------------------------------
Q 018595          242 AEGLKNALAAGADKDE-EDSEGRTALHFACGYGEVKCAQILLEAGANVDA------------------------------  290 (353)
Q Consensus       242 ~~~v~~Ll~~g~d~~~-~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~------------------------------  290 (353)
                      .++|++|+++|+|++. .|.+|.||||+||.+|+.+++++|+..|++++.                              
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            4799999999999987 589999999999999999999999999875443                              


Q ss_pred             -------------------------------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Q 018595          291 -------------------------------------LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPID  333 (353)
Q Consensus       291 -------------------------------------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~TpL~  333 (353)
                                                           ++..|+||||+++.++..+++..|++++++++.+|.+|+||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence                                                 3557889999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCC
Q 018595          334 VAKLNSQHDVLKLLEKDAF  352 (353)
Q Consensus       334 ~A~~~g~~~iv~~Ll~~~~  352 (353)
                      +|+.+|+.+++++|+++|.
T Consensus       162 ~A~~~g~~~~v~~Ll~~ga  180 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFA  180 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTC
T ss_pred             hhccccHHHHHHHHHHCCC
Confidence            9999999999999999873

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-17  Score=150.06  Aligned_cols=136  Identities=27%  Similarity=0.298  Sum_probs=111.4

Q ss_pred             hhcCcchhhhcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------------------------------
Q 018595          215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS----------------------------------  260 (353)
Q Consensus       215 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~g~d~~~~d~----------------------------------  260 (353)
                      ...|.++....+..|+||||+|+..|+.+++++|++.+...+..+.                                  
T Consensus        25 l~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (285)
T d1wdya_          25 LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY  104 (285)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT
T ss_pred             HHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccC
Confidence            3455565555567799999999999999999999987654432221                                  


Q ss_pred             ------------------------------------------CCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCc
Q 018595          261 ------------------------------------------EGRTALHFACGYGEVKCAQILLEA-GANVDALDKNKNT  297 (353)
Q Consensus       261 ------------------------------------------~g~t~Lh~Aa~~g~~~~v~~Ll~~-gadi~~~d~~G~T  297 (353)
                                                                .|.||||+||.+|+.+++++|++. |++++..+..|.+
T Consensus       105 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~  184 (285)
T d1wdya_         105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN  184 (285)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCC
T ss_pred             CCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCc
Confidence                                                      378889999999999999999864 7889999988988


Q ss_pred             HHHHHHHcC----CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhc
Q 018595          298 ALHYAAGYG----RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  350 (353)
Q Consensus       298 pLh~A~~~g----~~~~v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  350 (353)
                      +++.+...+    ...++++|+++|++++.+|..|.||||+|+.+|+.+++++|++.
T Consensus       185 ~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             ccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            888776543    34688999999999999999999999999999999999999974

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=8.1e-18  Score=153.96  Aligned_cols=102  Identities=17%  Similarity=0.200  Sum_probs=85.6

Q ss_pred             HcCCCCCCC-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH-------HHHHHH-------
Q 018595          250 AAGADKDEE-DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK-------ECVALL-------  314 (353)
Q Consensus       250 ~~g~d~~~~-d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gadi~~~d~~G~TpLh~A~~~g~~-------~~v~~L-------  314 (353)
                      ..+.++|.. |..|+||||+||..|+.++|++|+++|++++.+|..|+||||+||..++.       +++++|       
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            457788866 89999999999999999999999999999999999999999999976531       233322       


Q ss_pred             -----------------------------------HHCCC-------------------------------------CCC
Q 018595          315 -----------------------------------LENGA-------------------------------------AVT  322 (353)
Q Consensus       315 -----------------------------------l~~ga-------------------------------------d~~  322 (353)
                                                         +..+.                                     .++
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  253 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  253 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCcc
Confidence                                               22221                                     167


Q ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHhcC
Q 018595          323 LQNMDGKTPIDVAKLNSQHDVLKLLEKDA  351 (353)
Q Consensus       323 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  351 (353)
                      .+|.+|+||||+|+.+|+.++|++|+++|
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G  282 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVDALLDYG  282 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            88999999999999999999999999986