BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018596
         (353 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  151 bits (381), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 10/159 (6%)

Query: 6   HVPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNE 65
           ++PPGFRFHPTD+ELV++YL +K   +R+ + +I +VDLYK +PWDL E    G  E   
Sbjct: 14  NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE--- 70

Query: 66  WYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQK 125
           WYFF+ +D+KYP            +WKATG DK +  +   +G++K LVFY G+AP G K
Sbjct: 71  WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVK 130

Query: 126 SDWIMHEYRL-------ETDENGTPQEEGWVVCRVFKKR 157
           +DWIMHEYRL          + G+ + + WV+CR++ K+
Sbjct: 131 TDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 100/158 (63%), Gaps = 5/158 (3%)

Query: 7   VPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEW 66
           +PPGFRF+PTDEEL+  YL +K       L +I ++DLYK +PW L      G   + EW
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEW 73

Query: 67  YFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKS 126
           YFFS +D+KYP            +WKATG DK I ++   +G++K LVFY G+AP G K+
Sbjct: 74  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 133

Query: 127 DWIMHEYRL--ETDENGTPQEEGWVVCRVFKKRITTMR 162
           +WIMHEYRL   +  NG+ + + WV+CR++KK+ +  +
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 98/153 (64%), Gaps = 5/153 (3%)

Query: 7   VPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEW 66
           +PPGFRF+PTDEEL+  YL +K       L +I ++DLYK +PW L      G   + EW
Sbjct: 20  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEW 76

Query: 67  YFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKS 126
           YFFS +D+KYP            +WKATG DK I ++   +G++K LVFY G+AP G K+
Sbjct: 77  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 136

Query: 127 DWIMHEYRL--ETDENGTPQEEGWVVCRVFKKR 157
           +WIMHEYRL   +  NG+ + + WV+CR++KK+
Sbjct: 137 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 169


>pdb|1TVI|A Chain A, Solution Structure Of Tm1509 From Thermotoga Maritima:
           Vt1, A Nesgc Target Protein
          Length = 172

 Score = 27.7 bits (60), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 279 QNYEQAVDQVTDWRVLDKFVASQLSQEDSIAANNNVFRGNEQTNNVLVRQLM 330
           +N ++ ++++    + D  V   L  ED I   N  FRG ++  +VL   LM
Sbjct: 37  ENLKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTFPLM 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,903,214
Number of Sequences: 62578
Number of extensions: 449119
Number of successful extensions: 822
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 4
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)