Query 018596
Match_columns 353
No_of_seqs 229 out of 1015
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 03:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.1E-56 3.7E-61 403.7 15.5 154 2-158 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 6.9E-56 2.4E-60 397.4 14.7 154 3-159 13-168 (171)
3 1ldd_A APC2WHB, anaphase promo 30.8 26 0.00088 26.9 2.2 27 7-34 36-63 (74)
4 3nr5_A MAF1, repressor of RNA 13.2 53 0.0018 28.8 0.7 13 39-51 119-131 (164)
5 3dz1_A Dihydrodipicolinate syn 10.2 1.1E+02 0.0036 28.8 1.8 20 5-26 107-126 (313)
6 3cpr_A Dihydrodipicolinate syn 10.1 94 0.0032 29.0 1.4 20 5-25 116-135 (304)
7 3fkr_A L-2-keto-3-deoxyarabona 10.0 1.3E+02 0.0044 28.1 2.3 22 5-26 108-131 (309)
8 1f6k_A N-acetylneuraminate lya 9.8 1.1E+02 0.0036 28.4 1.6 20 6-26 105-124 (293)
9 2ehh_A DHDPS, dihydrodipicolin 9.7 1.1E+02 0.0037 28.3 1.6 20 6-26 101-120 (294)
10 2ojp_A DHDPS, dihydrodipicolin 9.6 1.1E+02 0.0037 28.3 1.6 19 6-25 102-120 (292)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-56 Score=403.70 Aligned_cols=154 Identities=50% Similarity=1.049 Sum_probs=135.1
Q ss_pred CCCCCCCCCceECCChHHHHHHHHHHHHhCCCCCCCceeeccCCCCCCCchhhhhhcCCCCCceEEEEecCCCCCCCCCc
Q 018596 2 NAFSHVPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTR 81 (353)
Q Consensus 2 ~~~s~LPPGfRF~PTDeELV~~YLr~Kv~g~~l~~~vI~evDVY~~ePWdL~~~~~~g~~~~~eWYFFs~r~kK~~~G~R 81 (353)
.+...|||||||||||||||.|||++|+.|.+++.++|.++|||++|||+|++.+..| +.+|||||++++||++|.|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~R 86 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGSR 86 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----CC
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCCC
Confidence 4566899999999999999999999999999999999999999999999999886544 3699999999999999999
Q ss_pred ccccccCCeeeecCCCceeecCCeeEEEEEEEEEeecCCCCCCCcCeEEEEEEeCCCCCCC-------CCCcceEEEEEE
Q 018596 82 TNRATTAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGT-------PQEEGWVVCRVF 154 (353)
Q Consensus 82 ~nRatg~G~WK~tG~~k~I~~~g~~IG~KKtLvFy~gr~p~g~KT~WiMhEYrL~~~~~~~-------~~~~~~VLCRIf 154 (353)
+||+|++||||+||++++|..+|.+||+||+|+||.|++|++.||+|+||||+|....... ...++|||||||
T Consensus 87 ~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf 166 (174)
T 3ulx_A 87 PNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY 166 (174)
T ss_dssp SCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEE
T ss_pred ceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEE
Confidence 9999999999999999999998999999999999999999999999999999998764221 245799999999
Q ss_pred eecC
Q 018596 155 KKRI 158 (353)
Q Consensus 155 kK~~ 158 (353)
+|+.
T Consensus 167 ~K~~ 170 (174)
T 3ulx_A 167 NKKN 170 (174)
T ss_dssp ESCC
T ss_pred EcCC
Confidence 9875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.9e-56 Score=397.44 Aligned_cols=154 Identities=48% Similarity=1.003 Sum_probs=131.1
Q ss_pred CCCCCCCCceECCChHHHHHHHHHHHHhCCCCCCCceeeccCCCCCCCchhhhhhcCCCCCceEEEEecCCCCCCCCCcc
Q 018596 3 AFSHVPPGFRFHPTDEELVDYYLRKKITSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRT 82 (353)
Q Consensus 3 ~~s~LPPGfRF~PTDeELV~~YLr~Kv~g~~l~~~vI~evDVY~~ePWdL~~~~~~g~~~~~eWYFFs~r~kK~~~G~R~ 82 (353)
....|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+|++.+..| +++|||||++++||++|.|+
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g---~~ewyFFs~r~~k~~~g~R~ 89 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSRP 89 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------C
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC---CccEEEEeccccccCCCCcc
Confidence 346899999999999999999999999999999999999999999999999986543 47999999999999999999
Q ss_pred cccccCCeeeecCCCceeecCCeeEEEEEEEEEeecCCCCCCCcCeEEEEEEeCCCCC--CCCCCcceEEEEEEeecCc
Q 018596 83 NRATTAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDEN--GTPQEEGWVVCRVFKKRIT 159 (353)
Q Consensus 83 nRatg~G~WK~tG~~k~I~~~g~~IG~KKtLvFy~gr~p~g~KT~WiMhEYrL~~~~~--~~~~~~~~VLCRIfkK~~~ 159 (353)
+|+|++||||+||++++|..++.+||+||+|+||+|++|++.||+|+||||+|..... +....++|||||||+|+..
T Consensus 90 ~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 90 NRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp CEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999999989999999999999999999999999999999987642 1234689999999999764
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=30.85 E-value=26 Score=26.88 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCCCceECC-ChHHHHHHHHHHHHhCCCC
Q 018596 7 VPPGFRFHP-TDEELVDYYLRKKITSRRI 34 (353)
Q Consensus 7 LPPGfRF~P-TDeELV~~YLr~Kv~g~~l 34 (353)
.|.|+.|.. |++||-. ||-+|+..+.+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 477999999 8888888 69999988765
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=13.15 E-value=53 Score=28.77 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=11.0
Q ss_pred eeeccCCCCCCCc
Q 018596 39 IKDVDLYKIEPWD 51 (353)
Q Consensus 39 I~evDVY~~ePWd 51 (353)
+.++|||.+.|-.
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5789999999983
No 5
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=10.22 E-value=1.1e+02 Score=28.75 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=15.0
Q ss_pred CCCCCCceECCChHHHHHHHHH
Q 018596 5 SHVPPGFRFHPTDEELVDYYLR 26 (353)
Q Consensus 5 s~LPPGfRF~PTDeELV~~YLr 26 (353)
.-+||- |.||+++|+.||-.
T Consensus 107 lv~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 107 MIAPPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp EECCCT--TCCSHHHHHHHHHH
T ss_pred EECCCC--CCCCHHHHHHHHHH
Confidence 346774 56999999998743
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=10.14 E-value=94 Score=28.98 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=15.5
Q ss_pred CCCCCCceECCChHHHHHHHH
Q 018596 5 SHVPPGFRFHPTDEELVDYYL 25 (353)
Q Consensus 5 s~LPPGfRF~PTDeELV~~YL 25 (353)
.-+|| |.|.||+++|+.||-
T Consensus 116 lv~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 116 LVVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEECC-CSSCCCHHHHHHHHH
T ss_pred EECCC-CCCCCCHHHHHHHHH
Confidence 34577 458899999999974
No 7
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=10.03 E-value=1.3e+02 Score=28.15 Aligned_cols=22 Identities=23% Similarity=0.634 Sum_probs=16.1
Q ss_pred CCCCCCce--ECCChHHHHHHHHH
Q 018596 5 SHVPPGFR--FHPTDEELVDYYLR 26 (353)
Q Consensus 5 s~LPPGfR--F~PTDeELV~~YLr 26 (353)
.-+||=|- |.||+++|+.||-.
T Consensus 108 lv~~Pyy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 108 MAMPPYHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp EECCSCBTTTBCCCHHHHHHHHHH
T ss_pred EEcCCCCccCCCCCHHHHHHHHHH
Confidence 34677332 79999999998743
No 8
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=9.85 E-value=1.1e+02 Score=28.38 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=15.3
Q ss_pred CCCCCceECCChHHHHHHHHH
Q 018596 6 HVPPGFRFHPTDEELVDYYLR 26 (353)
Q Consensus 6 ~LPPGfRF~PTDeELV~~YLr 26 (353)
-+||-| |.||+++|+.||-.
T Consensus 105 v~~P~y-~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 105 AVTPFY-YKFSFPEIKHYYDT 124 (293)
T ss_dssp EECCCS-SCCCHHHHHHHHHH
T ss_pred ECCCCC-CCCCHHHHHHHHHH
Confidence 356654 88999999999743
No 9
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=9.67 E-value=1.1e+02 Score=28.32 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=15.3
Q ss_pred CCCCCceECCChHHHHHHHHH
Q 018596 6 HVPPGFRFHPTDEELVDYYLR 26 (353)
Q Consensus 6 ~LPPGfRF~PTDeELV~~YLr 26 (353)
-+||- .|.||+++|+.||-.
T Consensus 101 v~~P~-y~~~s~~~l~~~f~~ 120 (294)
T 2ehh_A 101 VVVPY-YNKPTQRGLYEHFKT 120 (294)
T ss_dssp EECCC-SSCCCHHHHHHHHHH
T ss_pred ECCCC-CCCCCHHHHHHHHHH
Confidence 35664 488999999999843
No 10
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=9.61 E-value=1.1e+02 Score=28.26 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=14.8
Q ss_pred CCCCCceECCChHHHHHHHH
Q 018596 6 HVPPGFRFHPTDEELVDYYL 25 (353)
Q Consensus 6 ~LPPGfRF~PTDeELV~~YL 25 (353)
-+||-| |.||+++|+.||-
T Consensus 102 v~~P~y-~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 102 TVTPYY-NRPSQEGLYQHFK 120 (292)
T ss_dssp EECCCS-SCCCHHHHHHHHH
T ss_pred ECCCCC-CCCCHHHHHHHHH
Confidence 356644 8899999999973
Done!