BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018597
         (353 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HX1|A Chain A, Crystal Structure Of Possible Sugar Phosphatase, Had
           Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
           Atcc 33406 At 2.10 A Resolution
 pdb|2HX1|B Chain B, Crystal Structure Of Possible Sugar Phosphatase, Had
           Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
           Atcc 33406 At 2.10 A Resolution
 pdb|2HX1|C Chain C, Crystal Structure Of Possible Sugar Phosphatase, Had
           Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
           Atcc 33406 At 2.10 A Resolution
 pdb|2HX1|D Chain D, Crystal Structure Of Possible Sugar Phosphatase, Had
           Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
           Atcc 33406 At 2.10 A Resolution
          Length = 284

 Score = 27.7 bits (60), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 155 GFNWWASIIVTTLLIRTATVPLLINQLKSTSKLT 188
           GFNW+  +  T  L+R  T+P ++    +T  LT
Sbjct: 143 GFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLT 176


>pdb|3MMI|A Chain A, Crystal Structure Of The Globular Tail Of Myo4p
 pdb|3MMI|B Chain B, Crystal Structure Of The Globular Tail Of Myo4p
          Length = 386

 Score = 27.7 bits (60), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 19/104 (18%)

Query: 193 RLEEIKQDMQDKAMD----PMAVADGQKRMQNLFKEYGVHPLTPL------------KGL 236
           R E    D+ +  MD     + V +G  +  N+ +  G + L P+             GL
Sbjct: 11  RRESGNPDLLELLMDLNCYTLEVTEGYLKKVNVTEVNGDNVLGPIHVITTVVSSLVRNGL 70

Query: 237 FIQGPVFIS-FFLAISNMAEKVPSFKN--GGAFWFTDLSTPDSF 277
            IQ   FIS   L + ++   +P  +   GG FW ++LS   +F
Sbjct: 71  LIQSSKFISKVLLTVESIVMSLPKDETMLGGIFWLSNLSRLPAF 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,965,791
Number of Sequences: 62578
Number of extensions: 314507
Number of successful extensions: 1157
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 4
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)