Query 018597
Match_columns 353
No_of_seqs 205 out of 1170
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 5.7E-52 1.2E-56 392.3 24.2 201 140-350 41-241 (255)
2 PRK00145 putative inner membra 100.0 5.6E-50 1.2E-54 372.1 23.1 186 153-351 26-211 (223)
3 PRK01622 OxaA-like protein pre 100.0 6.9E-49 1.5E-53 371.6 24.3 202 140-350 42-248 (256)
4 TIGR03592 yidC_oxa1_cterm memb 100.0 1.5E-48 3.3E-53 351.9 20.7 180 157-350 1-180 (181)
5 PRK02463 OxaA-like protein pre 100.0 6.1E-48 1.3E-52 372.6 24.0 201 139-349 41-247 (307)
6 PRK01318 membrane protein inse 100.0 2.2E-48 4.8E-53 399.0 21.8 198 136-350 300-505 (521)
7 PF02096 60KD_IMP: 60Kd inner 100.0 7.9E-48 1.7E-52 350.6 20.1 187 157-350 2-194 (198)
8 PRK01001 putative inner membra 100.0 4.8E-46 1E-50 386.3 22.3 197 142-349 561-774 (795)
9 PRK02201 putative inner membra 100.0 1.1E-44 2.3E-49 355.1 24.0 207 139-350 108-339 (357)
10 COG0706 YidC Preprotein transl 100.0 2.2E-44 4.8E-49 350.1 21.2 203 137-350 89-294 (314)
11 PRK03449 putative inner membra 100.0 5.4E-43 1.2E-47 337.4 22.5 209 136-350 5-267 (304)
12 PRK01315 putative inner membra 100.0 3.2E-42 7E-47 335.0 22.8 190 153-349 37-254 (329)
13 PRK00247 putative inner membra 100.0 1.6E-40 3.5E-45 331.5 23.7 209 140-350 6-270 (429)
14 KOG1239 Inner membrane protein 100.0 5.4E-38 1.2E-42 310.7 18.3 263 82-349 21-288 (372)
15 PRK02654 putative inner membra 100.0 3.5E-33 7.5E-38 268.0 20.3 198 140-349 10-339 (375)
16 COG1422 Predicted membrane pro 97.4 0.0011 2.5E-08 60.5 9.3 96 156-252 44-145 (201)
17 PF01956 DUF106: Integral memb 93.7 0.34 7.4E-06 43.0 8.1 97 155-253 12-114 (168)
18 PF01956 DUF106: Integral memb 80.9 4.4 9.4E-05 35.9 6.1 69 187-255 42-112 (168)
19 KOG1239 Inner membrane protein 79.3 4.8 0.00011 40.6 6.5 180 157-346 34-241 (372)
20 COG1422 Predicted membrane pro 78.0 5 0.00011 37.1 5.5 21 234-254 123-143 (201)
21 PRK12772 bifunctional flagella 77.9 8.2 0.00018 41.5 8.0 32 193-224 479-510 (609)
22 COG1377 FlhB Flagellar biosynt 77.8 14 0.00031 37.2 9.1 30 194-223 224-253 (363)
23 PRK12721 secretion system appa 74.8 13 0.00028 37.3 8.0 32 193-224 216-247 (349)
24 TIGR01404 FlhB_rel_III type II 73.4 15 0.00032 36.8 7.9 31 194-224 216-246 (342)
25 PRK09108 type III secretion sy 72.5 16 0.00035 36.7 8.0 31 193-223 218-248 (353)
26 TIGR00328 flhB flagellar biosy 71.7 17 0.00037 36.4 8.0 32 193-224 216-247 (347)
27 PRK05702 flhB flagellar biosyn 69.7 20 0.00043 36.1 8.0 31 193-223 223-253 (359)
28 PRK06298 type III secretion sy 69.1 21 0.00045 35.9 8.0 32 193-224 217-248 (356)
29 PRK08156 type III secretion sy 68.8 22 0.00047 35.9 8.0 32 193-224 211-242 (361)
30 PRK13109 flhB flagellar biosyn 67.2 24 0.00052 35.5 8.0 31 193-223 225-255 (358)
31 PRK12468 flhB flagellar biosyn 64.6 28 0.00061 35.4 8.0 32 193-224 223-254 (386)
32 PF06695 Sm_multidrug_ex: Puta 62.8 42 0.00091 28.3 7.6 63 153-226 11-73 (121)
33 TIGR03142 cytochro_ccmI cytoch 56.8 48 0.001 27.6 6.9 33 187-219 38-70 (117)
34 PF05280 FlhC: Flagellar trans 56.3 18 0.00039 32.7 4.4 39 215-253 37-86 (175)
35 COG3105 Uncharacterized protei 56.2 47 0.001 28.8 6.6 37 158-202 15-51 (138)
36 COG3105 Uncharacterized protei 53.4 84 0.0018 27.2 7.7 14 156-169 6-19 (138)
37 PRK12773 flhB flagellar biosyn 50.5 41 0.00088 36.3 6.5 33 193-225 514-546 (646)
38 PF01312 Bac_export_2: FlhB Hr 47.2 28 0.00061 34.7 4.6 29 194-222 219-247 (343)
39 PF05377 FlaC_arch: Flagella a 45.6 78 0.0017 23.3 5.5 37 187-230 16-54 (55)
40 PF04120 Iron_permease: Low af 42.1 2.3E+02 0.005 24.5 9.5 64 157-224 40-113 (132)
41 PF08479 POTRA_2: POTRA domain 41.3 42 0.00091 25.4 3.8 37 192-228 17-53 (76)
42 PRK11546 zraP zinc resistance 40.0 2.4E+02 0.0051 24.8 8.6 18 205-222 85-102 (143)
43 PF07074 TRAP-gamma: Transloco 40.0 2.8E+02 0.006 25.1 9.2 14 215-228 103-116 (170)
44 KOG3817 Uncharacterized conser 38.5 1.3E+02 0.0029 30.5 7.6 91 141-234 254-353 (452)
45 PF10979 DUF2786: Protein of u 35.7 1.2E+02 0.0027 20.9 5.1 22 207-228 20-41 (43)
46 TIGR03593 yidC_nterm membrane 35.7 20 0.00043 35.6 1.5 54 101-155 300-366 (366)
47 PF14335 DUF4391: Domain of un 34.9 93 0.002 28.8 5.8 44 180-224 177-220 (221)
48 PF09958 DUF2192: Uncharacteri 34.6 69 0.0015 30.3 4.7 27 206-235 26-52 (231)
49 PRK13453 F0F1 ATP synthase sub 32.6 3.5E+02 0.0076 23.9 9.1 28 153-180 13-46 (173)
50 COG3707 AmiR Response regulato 32.1 1.5E+02 0.0033 27.4 6.4 49 173-228 113-161 (194)
51 PF11460 DUF3007: Protein of u 29.9 1.4E+02 0.0031 24.8 5.3 22 195-218 81-102 (104)
52 COG3167 PilO Tfp pilus assembl 29.9 1.1E+02 0.0024 28.3 5.1 43 184-226 48-90 (211)
53 COG1133 SbmA ABC-type long-cha 29.7 2.4E+02 0.0053 28.1 7.7 116 131-252 105-231 (405)
54 PHA00327 minor capsid protein 29.3 80 0.0017 28.4 4.0 44 180-232 37-80 (187)
55 PRK12860 transcriptional activ 28.3 3.1E+02 0.0068 25.2 7.8 39 215-253 37-86 (189)
56 PRK12722 transcriptional activ 27.9 3.2E+02 0.007 25.0 7.8 39 215-253 37-86 (187)
57 PF04678 DUF607: Protein of un 27.4 2.5E+02 0.0054 25.2 7.1 18 185-202 57-74 (180)
58 PF04420 CHD5: CHD5-like prote 26.3 2E+02 0.0042 25.4 6.1 23 181-203 36-58 (161)
59 PRK06771 hypothetical protein; 25.8 2.7E+02 0.0057 22.8 6.1 46 158-203 3-48 (93)
60 KOG2966 Uncharacterized conser 25.7 4.1E+02 0.0088 26.4 8.4 17 230-246 211-227 (325)
61 PF05529 Bap31: B-cell recepto 25.5 2.7E+02 0.0058 24.9 7.0 13 160-172 109-121 (192)
62 PF10319 7TM_GPCR_Srj: Serpent 24.3 4.2E+02 0.0092 26.2 8.5 31 159-189 198-228 (310)
63 PF10225 DUF2215: Uncharacteri 24.3 2.7E+02 0.0059 26.5 7.0 90 141-233 128-227 (249)
64 cd07922 CarBa CarBa is the A s 23.5 1.3E+02 0.0028 23.9 3.9 23 207-229 16-38 (81)
65 TIGR02230 ATPase_gene1 F0F1-AT 22.9 3.2E+02 0.007 22.5 6.2 18 234-251 48-65 (100)
66 PF00153 Mito_carr: Mitochondr 22.6 1.5E+02 0.0033 22.5 4.2 36 215-250 47-83 (95)
67 PRK11677 hypothetical protein; 22.5 3.1E+02 0.0067 23.8 6.4 74 147-223 1-75 (134)
68 PF10268 Tmemb_161AB: Predicte 22.0 4.9E+02 0.011 27.4 8.8 89 160-274 316-406 (486)
69 PF14802 TMEM192: TMEM192 fami 21.6 4.9E+02 0.011 24.7 8.1 56 172-227 156-226 (236)
70 COG4235 Cytochrome c biogenesi 21.6 6.5E+02 0.014 24.7 9.1 46 157-202 3-52 (287)
71 PRK10328 DNA binding protein, 21.1 2.1E+02 0.0046 24.8 5.0 17 213-229 56-72 (134)
72 KOG4503 Uncharacterized conser 20.6 6.4E+02 0.014 23.7 8.3 39 189-227 123-165 (230)
73 COG5085 Predicted membrane pro 20.6 6.4E+02 0.014 23.7 8.3 39 189-227 123-165 (230)
74 PF06305 DUF1049: Protein of u 20.4 3.5E+02 0.0075 19.7 6.0 19 184-202 47-65 (68)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=5.7e-52 Score=392.32 Aligned_cols=201 Identities=31% Similarity=0.540 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 018597 140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQ 219 (353)
Q Consensus 140 v~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~ 219 (353)
+.++.++++++|..+|.|||++|+++|+++|++++|++++|+|+++||+++|||++++|+||++ +|++++++.++|++
T Consensus 41 ~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~--~~~~~~~k~~~e~~ 118 (255)
T PRK02944 41 VYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSS--KDQATQQKLQQEMM 118 (255)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999985 47888888999999
Q ss_pred HHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHHHHhhccC
Q 018597 220 NLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG 299 (353)
Q Consensus 220 ~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~~l~~~~~ 299 (353)
+||||||+||+++|+|+++|+|||+++|.++|++.+ +.++||+|+ ||+.+|||+|||++++++++++.+++....
T Consensus 119 ~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~----l~~~~flW~-dLs~~Dp~~iLPil~~~~~~~~~~~~~~~~ 193 (255)
T PRK02944 119 QLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE----ISKHSFLWF-DLGQADPYYILPIVAGITTFIQQKLMMAGT 193 (255)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH----HhhcCCCcc-ccCcchHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999999765 678999999 999999999999999999999998865432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597 300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF 350 (353)
Q Consensus 300 ~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~ 350 (353)
.+++ .+|+.+++++|+++++++.++|+|+.+||++||+|+++|+++..
T Consensus 194 ~~~~---~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~ 241 (255)
T PRK02944 194 AGQN---PQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIK 241 (255)
T ss_pred CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2223 34777889999999999999999999999999999999998754
No 2
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.6e-50 Score=372.13 Aligned_cols=186 Identities=27% Similarity=0.502 Sum_probs=169.9
Q ss_pred hcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccc
Q 018597 153 FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTP 232 (353)
Q Consensus 153 ~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~ 232 (353)
.+|+|||++|+++|+++|++++|++++|+|+++||+++|||++++|+||++ |+++ .++|++++|||||+||+++
T Consensus 26 ~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~---d~~~---~~~e~~~Lyk~~~inp~~~ 99 (223)
T PRK00145 26 NPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKN---DPQK---LQQEMMKLYKEKGVNPLGG 99 (223)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc---cHHH---HHHHHHHHHHHhCCCchHH
Confidence 358999999999999999999999999999999999999999999999985 6654 5899999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 018597 233 LKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNI 312 (353)
Q Consensus 233 ~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~~l~~~~~~~~~p~~~~mk~~ 312 (353)
|+|+++|+|||+++|+++|++++ +.++|++|++||+.+||+++||++++++++++.+++.++. +...+.++.+
T Consensus 100 ~lp~liQiPif~~l~~~i~~~~~----~~~~~flW~~dLt~~Dp~~iLPil~~~~~~l~~~~~~~~~---~~~~~~~k~m 172 (223)
T PRK00145 100 CLPLLIQWPILIALYYVFNNLTG----INGVSFLWIKDLAKPDITWILPILSGATTYLSGYLMTKAD---SSQAGQMKTM 172 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh----ccCCCccChhhccCcchHHHHHHHHHHHHHHHHHHcCCCC---hhHHHHHHHH
Confidence 99999999999999999999865 6789999999999999999999999999999998876542 2334567888
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhee
Q 018597 313 SRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEFV 351 (353)
Q Consensus 313 ~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~~ 351 (353)
++++|+++++++.++|+|+++||++||+|+++|+++...
T Consensus 173 ~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~l~~ 211 (223)
T PRK00145 173 NIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKK 211 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999987643
No 3
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=6.9e-49 Score=371.61 Aligned_cols=202 Identities=27% Similarity=0.483 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHH----HHHHHhhchHHHHHHHHHhcccCCHHHHHHHH
Q 018597 140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKS----TSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQ 215 (353)
Q Consensus 140 v~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~----~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~ 215 (353)
+.++.++++++|+..|.|||++|+++|+++|++++|++++|+|+ ++||+++|||++++|+||++++ |+++.++.+
T Consensus 42 ~~p~~~ll~~l~~~~~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~kyk~~~-d~~~~~~~~ 120 (256)
T PRK01622 42 VYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTK-DLEKQKEYQ 120 (256)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHHHhccC-CHHHHHHHH
Confidence 67889999999999999999999999999999999999999999 8999999999999999998754 888888899
Q ss_pred HHHHHHHHHhCCCCcc-chhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHHHH
Q 018597 216 KRMQNLFKEYGVHPLT-PLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVEC 294 (353)
Q Consensus 216 qe~~~Lykk~gv~P~~-~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~~l 294 (353)
+|++++||||||||++ +|+|+++|+|||+++|.++|++ |++.++|++|+ ||+.+| +|||+++++++++++++
T Consensus 121 ~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~----~~l~~~~flW~-dLs~~D--~ILPil~~~~~~~~~~~ 193 (256)
T PRK01622 121 KEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRT----EEIASHSFLWF-NLGHAD--HILPIIAGLTYFIQMKV 193 (256)
T ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhC----hhccCCCceee-CCcchh--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999986 45888999999 999999 89999999999999998
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597 295 NMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF 350 (353)
Q Consensus 295 ~~~~~~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~ 350 (353)
+...+. +....+.+|.+++++|+++++++.++|+|+++||++||+|+++|+++..
T Consensus 194 ~~~~~~-~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~ 248 (256)
T PRK01622 194 SQSNGT-SPEQVQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLR 248 (256)
T ss_pred cCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764322 1223345677779999999999999999999999999999999998754
No 4
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=1.5e-48 Score=351.86 Aligned_cols=180 Identities=31% Similarity=0.601 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccchhhh
Q 018597 157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGL 236 (353)
Q Consensus 157 pW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~~ 236 (353)
|||++|+++|+++|++++|++++|+|+++||++++||++++|+||++ |++ +.++|++++|||||+||+++|+|+
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~---~~~---~~~~e~~~l~k~~~~~p~~~~lp~ 74 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKD---DPQ---KLQQEMMKLYKEEGVNPLGGCLPL 74 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---hHH---HHHHHHHHHHHHhCCCcHHHHHHH
Confidence 69999999999999999999999999999999999999999999985 544 458999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 018597 237 FIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGF 316 (353)
Q Consensus 237 liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~~l~~~~~~~~~p~~~~mk~~~~v~ 316 (353)
++|+|||+++|.++|++. ++.++|++||+||+.+||||+||++++++++++.+++.+.+. + .+.+|.+++++
T Consensus 75 liQ~Pif~~~~~~lr~~~----~l~~~~flW~~dL~~~Dp~~iLPii~~~~~~~~~~~~~~~~~--~--~~~~k~m~~~~ 146 (181)
T TIGR03592 75 LIQMPIFIALYQVLRRSI----ELRHAPFLWIKDLSAPDPYYILPILMGATMFLQQKLSPSGPP--D--PAQQKIMMYIM 146 (181)
T ss_pred HHHHHHHHHHHHHHHhhH----HhccCCCcCccccCcccHHHHHHHHHHHHHHHHHHhcCCCCC--C--HHHHHHHHHHH
Confidence 999999999999999965 478999999999999999999999999999999999876432 2 23567788999
Q ss_pred HHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597 317 AVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF 350 (353)
Q Consensus 317 ~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~ 350 (353)
|+++++++.++|+|+++||++||+|+++|+++.+
T Consensus 147 p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~ 180 (181)
T TIGR03592 147 PLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIIN 180 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998753
No 5
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=6.1e-48 Score=372.62 Aligned_cols=201 Identities=21% Similarity=0.372 Sum_probs=181.3
Q ss_pred cHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHH----HHHHHhhchHHHHHHHHHhcccCCHHHHHHH
Q 018597 139 PVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKS----TSKLTLMRPRLEEIKQDMQDKAMDPMAVADG 214 (353)
Q Consensus 139 pv~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~----~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~ 214 (353)
-+.++.++++++|..+|++||++||++|+++|++++|++++|+++ ++||+++|||+++||+||++++ |++++++.
T Consensus 41 l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~-~~~~~~~~ 119 (307)
T PRK02463 41 LGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNAT-TQEEKMAA 119 (307)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCC-ChHHHHHH
Confidence 368899999999999999999999999999999999999988875 6899999999999999999864 67777788
Q ss_pred HHHHHHHHHHhCCCCcc--chhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHH
Q 018597 215 QKRMQNLFKEYGVHPLT--PLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITV 292 (353)
Q Consensus 215 ~qe~~~Lykk~gv~P~~--~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~ 292 (353)
++|++++|||||+||++ ||+|+|+|+|||+++|++++. .|++.+++|+|+ ||+.|| ++||++++++++++.
T Consensus 120 q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~----~~~l~~~~flwi-dL~~p~--~iLpii~~v~~~~q~ 192 (307)
T PRK02463 120 QTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQY----TKGVSTSTFLGI-DLGSPS--LVLTAIIGVLYFFQS 192 (307)
T ss_pred HHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhc----chhhccCCeeee-ecCchh--HHHHHHHHHHHHHHH
Confidence 99999999999999998 899999999999999999985 577999999999 998754 799999999999999
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhh
Q 018597 293 ECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGE 349 (353)
Q Consensus 293 ~l~~~~~~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~ 349 (353)
+++... .. +...++||.+++++|++++++++++|+||.+||++||+|+++|+++.
T Consensus 193 ~~~~~~-~~-~~q~~~mk~m~~~~Pim~~~~~~~~PagL~lYW~~snlfsi~Q~~i~ 247 (307)
T PRK02463 193 WLSMMG-VP-EEQREQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLIT 247 (307)
T ss_pred HHhccC-CC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987643 22 22345688899999999999999999999999999999999999874
No 6
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=2.2e-48 Score=398.99 Aligned_cols=198 Identities=27% Similarity=0.569 Sum_probs=181.0
Q ss_pred Ccc--cHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHH
Q 018597 136 SFL--PVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVAD 213 (353)
Q Consensus 136 ~~~--pv~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~ 213 (353)
||+ .+.+++++|+++|.++| |||++||++|+++|++++|++++|+|+++||+++||||++||+||++ |+++
T Consensus 300 G~~~~~~~pl~~~L~~i~~~~g-~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~---d~~k--- 372 (521)
T PRK01318 300 GWLWFITKPLFWLLDFLHSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKD---DPQK--- 372 (521)
T ss_pred CcHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHh---hHHH---
Confidence 554 58999999999999999 99999999999999999999999999999999999999999999985 6654
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcc-cccCCCCcchHhHH-----HHHHHHH
Q 018597 214 GQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAF-WFTDLSTPDSFYIL-----PILTGLS 287 (353)
Q Consensus 214 ~~qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~l-W~~dLt~pDp~~IL-----Pil~~~~ 287 (353)
.++||++|||||||||+++|+|+|+|+|||+++|.+++++.+ +..++|+ ||+||+.+||++|| |++++++
T Consensus 373 ~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e----l~~~~fl~Wi~DLs~~Dp~~il~~~~lPil~~~~ 448 (521)
T PRK01318 373 MQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE----LRHAPFIGWIHDLSAPDPYFILHIGLLPILMGIT 448 (521)
T ss_pred HHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH----hccCchheeeccccccccchhHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999876 5667887 99999999999999 9999999
Q ss_pred HHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597 288 FLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF 350 (353)
Q Consensus 288 ~~~~~~l~~~~~~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~ 350 (353)
++++++++.+. ++|+ ++++|++||+++++++.++|+||++||++||+++++|++++.
T Consensus 449 ~~~~~~l~~~~---~~~~---q~kim~~mpi~~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~ 505 (521)
T PRK01318 449 MFLQQKLNPTP---TDPM---QAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLIN 505 (521)
T ss_pred HHHHHHhcCCC---CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998653 3454 345677799999999999999999999999999999998764
No 7
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=7.9e-48 Score=350.63 Aligned_cols=187 Identities=40% Similarity=0.679 Sum_probs=171.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccchhhh
Q 018597 157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGL 236 (353)
Q Consensus 157 pW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~~ 236 (353)
+||++|+++|+++|++++|+.++|+|+++||++++||++++|+||++ |++ +.++|++++|||||+||+++|+++
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~---~~~---~~~~~~~~l~k~~~~~p~~~~~~~ 75 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKE---DQQ---KMQQEMQKLYKKHGVNPLKGCLPP 75 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHH---HHHHHHHHHHHHcCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999964 444 468999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcc-----hHhHHHHHHHHHHHHHHHHhhc-cCCCCChHHHHHH
Q 018597 237 FIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPD-----SFYILPILTGLSFLITVECNMQ-EGLEGNPAAVTMK 310 (353)
Q Consensus 237 liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pD-----p~~ILPil~~~~~~~~~~l~~~-~~~~~~p~~~~mk 310 (353)
++|+|||+++|.++|+|++ +|++.++|++|++||+.+| ||++||++++++++++++++.+ ....+++..+.+|
T Consensus 76 liq~Pif~~~~~~lr~~~~-~~~~~~~g~lw~~dL~~~D~~~~~p~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~k 154 (198)
T PF02096_consen 76 LIQIPIFIGLFRALRRMAE-VPSLATGGFLWFPDLTAPDPTMGLPYFILPILAGASMFLNQELSMKNSKQKSPQQAKMMK 154 (198)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcccccCceeChHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCccccHHHH
Confidence 9999999999999999999 8999999999999999999 9999999999999999999864 1222344566678
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597 311 NISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF 350 (353)
Q Consensus 311 ~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~ 350 (353)
.+.+++|+++++++.++|+|+++||++||+|+++|+++.+
T Consensus 155 ~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~ 194 (198)
T PF02096_consen 155 IMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILR 194 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999998754
No 8
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.8e-46 Score=386.29 Aligned_cols=197 Identities=22% Similarity=0.419 Sum_probs=173.2
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 018597 142 ALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNL 221 (353)
Q Consensus 142 ~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~L 221 (353)
++.++++++|..+| |||++||++|+++|++++||+++|+|+++||+.+||||++||+||++ |+++ +|+|||+|
T Consensus 561 ~L~~ll~~fh~l~G-nwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKd---D~qK---~QqEmMkL 633 (795)
T PRK01001 561 LLFIIMKFFKFLTG-SWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKK---EPKR---AQMEIMAL 633 (795)
T ss_pred HHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHh---HHHH---HHHHHHHH
Confidence 34666788999999 99999999999999999999999999999999999999999999985 5554 59999999
Q ss_pred HHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcc--cccCCCCcchHh--------------HHHHHHH
Q 018597 222 FKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAF--WFTDLSTPDSFY--------------ILPILTG 285 (353)
Q Consensus 222 ykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~l--W~~dLt~pDp~~--------------ILPil~~ 285 (353)
||||||||++||+|+|+|+|||+++|++++++.+ +...+|+ |++||+.+||++ ||||+++
T Consensus 634 YKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie----LRgasFLpgWI~DLSapDplf~~~~~i~FiGd~i~ILPILmg 709 (795)
T PRK01001 634 YKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL----LRGASFIPGWIDNLTAPDVLFSWETPIWFIGNEFHLLPILLG 709 (795)
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH----hcCCchhhhhHhhccCCCccccccccccccccchhHHHHHHH
Confidence 9999999999999999999999999999999876 4456676 999999999864 9999999
Q ss_pred HHHHHHHHHhhccCC-CCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhh
Q 018597 286 LSFLITVECNMQEGL-EGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGE 349 (353)
Q Consensus 286 ~~~~~~~~l~~~~~~-~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~ 349 (353)
+++++++++++.+.. ..++.+++++.|+.+||+++++++.++|+||++||++||+++++|++++
T Consensus 710 vtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI 774 (795)
T PRK01001 710 VVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVT 774 (795)
T ss_pred HHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999864321 1223344556667899999999999999999999999999999999875
No 9
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.1e-44 Score=355.11 Aligned_cols=207 Identities=17% Similarity=0.297 Sum_probs=177.4
Q ss_pred cHHHHHHHHHHHH------hhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHH
Q 018597 139 PVAALQHFIDAMH------NFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVA 212 (353)
Q Consensus 139 pv~~l~~lL~~lh------~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~ 212 (353)
-+.++.+++.++| ...|+|||+|||++|+++|++++|++++|+++++||+++|||+++||+||++++.|+++++
T Consensus 108 ~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~~ 187 (357)
T PRK02201 108 FVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQ 187 (357)
T ss_pred HHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHHH
Confidence 3667777787775 5579999999999999999999999999999999999999999999999998756999999
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcc---------hHhHHHHH
Q 018597 213 DGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPD---------SFYILPIL 283 (353)
Q Consensus 213 ~~~qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pD---------p~~ILPil 283 (353)
+.++|+++|||||||||+++|+|+|+|+|||+++|+++|.+.+ +....++|+ ||+.+| ++++++++
T Consensus 188 k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~----l~~~~flgi-dLs~~~~~~~~~~~~~~l~l~ii 262 (357)
T PRK02201 188 RKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS----IKVTTWLGI-DLSATSWQEIFAGNWIYLPILII 262 (357)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh----hccCCCccc-ccCCCChhhhccccchHHHHHHH
Confidence 9999999999999999999999999999999999999998765 667889999 999988 34556667
Q ss_pred HHHHHHHHHHHh----hccCC------CCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597 284 TGLSFLITVECN----MQEGL------EGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF 350 (353)
Q Consensus 284 ~~~~~~~~~~l~----~~~~~------~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~ 350 (353)
+++++++++.+. .+++. ++++..+++++++++||+++++++.++|+||.+||++||+|+++|+++.+
T Consensus 263 ~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~i~ 339 (357)
T PRK02201 263 VVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLGIH 339 (357)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666443 32221 12233456788999999999999999999999999999999999998754
No 10
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.2e-44 Score=350.07 Aligned_cols=203 Identities=29% Similarity=0.524 Sum_probs=180.7
Q ss_pred cccHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHH
Q 018597 137 FLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQK 216 (353)
Q Consensus 137 ~~pv~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~q 216 (353)
|.+...+..+++++|.+.|+|||++|+++|+++|++++|++.++.++++||+.+|||+++||+||++ .|+++ .|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~--~~~~~---~q~ 163 (314)
T COG0706 89 WNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKG--TDKQK---QQQ 163 (314)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCC--CCHHH---HHH
Confidence 3455558899999999999999999999999999999999999999999999999999999999995 36655 488
Q ss_pred HHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCcccccCCcc-cccCCCCcchHhHH--HHHHHHHHHHHHH
Q 018597 217 RMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAF-WFTDLSTPDSFYIL--PILTGLSFLITVE 293 (353)
Q Consensus 217 e~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~~g~l-W~~dLt~pDp~~IL--Pil~~~~~~~~~~ 293 (353)
|+++|||||||||+.||+|+++|+|||+++|.++++..+ +...+++ |++||+.+||++++ ||+++++++.+.+
T Consensus 164 e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~----l~~~~f~~w~~dl~~~dp~~~~~~pii~gv~~f~q~~ 239 (314)
T COG0706 164 EMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE----LRGAPFLGWITDLSLPDPDYILLLPILAGVTMFLQQK 239 (314)
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc----ccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877 4445555 99999999999976 9999999999999
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597 294 CNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGEF 350 (353)
Q Consensus 294 l~~~~~~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~~ 350 (353)
++.+... ++..+++++++.+||+++.++++++|+||++||++||+|+++|++++.
T Consensus 240 ls~~~~~--~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~ 294 (314)
T COG0706 240 LSPRNLS--TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILN 294 (314)
T ss_pred hccccCC--cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHh
Confidence 9886421 222335788899999999999999999999999999999999999765
No 11
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.4e-43 Score=337.42 Aligned_cols=209 Identities=21% Similarity=0.383 Sum_probs=169.4
Q ss_pred CcccHHHHHHHHHHHHh-----hcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHH
Q 018597 136 SFLPVAALQHFIDAMHN-----FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMA 210 (353)
Q Consensus 136 ~~~pv~~l~~lL~~lh~-----~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~ 210 (353)
.|.|++.+.++++.++. .+|+|||+||+++|+++|++++|++++|+|+++||+++|||++++|+||++ |++
T Consensus 5 ~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~---~~~- 80 (304)
T PRK03449 5 IYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGN---DRQ- 80 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhh---hHH-
Confidence 45677777777766543 479999999999999999999999999999999999999999999999985 444
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCccccc---------------------CCcc---
Q 018597 211 VADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKN---------------------GGAF--- 266 (353)
Q Consensus 211 ~~~~~qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~---------------------~g~l--- 266 (353)
+.++|+++|||||||||+++|+|+|+|+|||+++|.++|+|++..++..+ ++|+
T Consensus 81 --~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~ 158 (304)
T PRK03449 81 --KMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR 158 (304)
T ss_pred --HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh
Confidence 45899999999999999999999999999999999999998653222110 1333
Q ss_pred --------ccc----------CCCCcchH---hHHHHHHHHHHHHHHHHhhccCC---CCChHHHHH-HHHHHHHHHHHH
Q 018597 267 --------WFT----------DLSTPDSF---YILPILTGLSFLITVECNMQEGL---EGNPAAVTM-KNISRGFAVLSI 321 (353)
Q Consensus 267 --------W~~----------dLt~pDp~---~ILPil~~~~~~~~~~l~~~~~~---~~~p~~~~m-k~~~~v~~v~~~ 321 (353)
|+. |++.+|.. ++|||+++++++++.++++.+.. ..++.++.| |.|+++||++++
T Consensus 159 ~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M~~~mP~m~~ 238 (304)
T PRK03449 159 LFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLALWVFPLGVL 238 (304)
T ss_pred hcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHHHHHhHHHHH
Confidence 333 56666643 46889999999999998764322 123433334 667799999999
Q ss_pred HhhcchhhHHHHHHHHhhHHHHHHHhhhe
Q 018597 322 PLTMTFPKAIFCYWITSNFFSLVYGLGEF 350 (353)
Q Consensus 322 ~~~~~~Paal~lYW~tSnlfsl~Q~lv~~ 350 (353)
+++.++|+|+.+||++||+|+++|+++.+
T Consensus 239 ~~~~~~Pagl~LYW~~snl~~i~Qq~~i~ 267 (304)
T PRK03449 239 VGGPFLPLAILLYWVSNNIWTFGQQHYVF 267 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754
No 12
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3.2e-42 Score=334.99 Aligned_cols=190 Identities=25% Similarity=0.454 Sum_probs=159.4
Q ss_pred hcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccc
Q 018597 153 FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTP 232 (353)
Q Consensus 153 ~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~ 232 (353)
.+|+|||++|+++|+++|++++|++++|+|+++||++++||+++||+||++ |++ ++++|+++|||||||||+++
T Consensus 37 ~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~---~~~---~~~~e~~~Lykk~ginp~~g 110 (329)
T PRK01315 37 DSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKG---DRE---RMSQEMMKLYKETGTNPLSS 110 (329)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHh---HHH---HHHHHHHHHHHHcCCCchHH
Confidence 468899999999999999999999999999999999999999999999996 444 35899999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhc-----------CcccccCCcccccCCCC----------cch---HhHHHHHHHHHH
Q 018597 233 LKGLFIQGPVFISFFLAISNMAEK-----------VPSFKNGGAFWFTDLST----------PDS---FYILPILTGLSF 288 (353)
Q Consensus 233 ~l~~liQiPIfi~lf~alr~m~~~-----------vpsl~~~g~lW~~dLt~----------pDp---~~ILPil~~~~~ 288 (353)
|+|+|+|+|||+++|.+||++++. .+++..+.++|+ +|+. .|. ++|||+++++++
T Consensus 111 clp~liQ~Pif~alf~~l~~~~~~~~~~~~~~~~~~~s~~~~~~fg~-~L~~~f~~~~~~~~~~~~ii~~iL~il~~~~~ 189 (329)
T PRK01315 111 CLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGA-PLAATFLQALNAGNTAVQVVAAVLIILMSASQ 189 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccc-cccccccccccccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999987642 234555566554 3332 222 468999999999
Q ss_pred HHHHHHhhccC----CCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhh
Q 018597 289 LITVECNMQEG----LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGE 349 (353)
Q Consensus 289 ~~~~~l~~~~~----~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~ 349 (353)
++++...+.+. ...+|+.+++|.++++||+++++++.++|+||.+||++||+|+++|+++.
T Consensus 190 ~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LYW~~snl~si~Qq~~v 254 (329)
T PRK01315 190 FITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLTSNVWTMGQQFYV 254 (329)
T ss_pred HHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98865433222 22356667788889999999999999999999999999999999999764
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=1.6e-40 Score=331.53 Aligned_cols=209 Identities=21% Similarity=0.400 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHhh----c----CChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHH
Q 018597 140 VAALQHFIDAMHNF----T----GFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAV 211 (353)
Q Consensus 140 v~~l~~lL~~lh~~----~----GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~ 211 (353)
+.++.++|.++|.. . |+|||++|+++|++||++++|++++|+|+++||+.++|++++||+||+++. |++++
T Consensus 6 ~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~-d~e~~ 84 (429)
T PRK00247 6 IYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKT-DEASI 84 (429)
T ss_pred HHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCC-CHHHH
Confidence 45566777766643 2 578999999999999999999999999999999999999999999999864 78888
Q ss_pred HHHHHHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhhcCccccc-----------------------------
Q 018597 212 ADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKN----------------------------- 262 (353)
Q Consensus 212 ~~~~qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~~vpsl~~----------------------------- 262 (353)
+++++|+++|||||||||+.+|+|+|||+|||+++|++||+|+.+.+++.+
T Consensus 85 ~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvpL~~ 164 (429)
T PRK00247 85 RELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVPLPA 164 (429)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCCccc
Confidence 899999999999999999999999999999999999999999865555432
Q ss_pred ------CCcccccCCCCcch-HhHHH--HHHHHHHHHHHHHhhccC----CCCCh----HHHHHHHHHHHHHHHHHHhhc
Q 018597 263 ------GGAFWFTDLSTPDS-FYILP--ILTGLSFLITVECNMQEG----LEGNP----AAVTMKNISRGFAVLSIPLTM 325 (353)
Q Consensus 263 ------~g~lW~~dLt~pDp-~~ILP--il~~~~~~~~~~l~~~~~----~~~~p----~~~~mk~~~~v~~v~~~~~~~ 325 (353)
++++|+ +.+.+|. +++|| ++++++++++..+++.+. ...++ +++.|..+++++|++.+.+++
T Consensus 165 ~~sm~~e~~~~~-~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~~g~ 243 (429)
T PRK00247 165 YVSMPAEQLAYL-GTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLGL 243 (429)
T ss_pred ccccchhhhhhc-cCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 122222 2344554 46788 455556667777765432 12334 333455556778887666554
Q ss_pred c--hhhHHHHHHHHhhHHHHHHHhhhe
Q 018597 326 T--FPKAIFCYWITSNFFSLVYGLGEF 350 (353)
Q Consensus 326 ~--~Paal~lYW~tSnlfsl~Q~lv~~ 350 (353)
+ +|+||.|||++||+|+++|+++.|
T Consensus 244 ~~~~PaallLYWv~snlwtl~Qq~i~~ 270 (429)
T PRK00247 244 TGPFPTAIALYWVANNLWTLIQNIIMY 270 (429)
T ss_pred hccchHHHHHHHHHhhHHHHHHHHHHH
Confidence 4 899999999999999999999765
No 14
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-38 Score=310.69 Aligned_cols=263 Identities=37% Similarity=0.601 Sum_probs=223.8
Q ss_pred ccccccccccCCCCCCcccccccccc-cccch----hhhHHHhhccCcchhHHHHHhcCCcccHHHHHHHHHHHHhhcCC
Q 018597 82 VGSAFCRYMSTTVGEGADKIELISDV-ADVFT----ETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGF 156 (353)
Q Consensus 82 ~~~~~~R~~St~~~~~s~~~~~~~~~-~~v~~----~~~~~~~~~~~p~~~e~~~~~~~~~~pv~~l~~lL~~lh~~~Gl 156 (353)
.+-..||.+|+...++.+..+.+.-+ .+..+ +.....+.+......+++....++|.|++.+|++|+.+|++.|+
T Consensus 21 l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p~~~lq~~l~~~h~~~g~ 100 (372)
T KOG1239|consen 21 LLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRPVATLQNELERLHVYSGL 100 (372)
T ss_pred hhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCchhHHHHHHHHHHHHhCC
Confidence 34557777777666665553332111 11111 11111122222333445667779999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccchhhh
Q 018597 157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGL 236 (353)
Q Consensus 157 pW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~~ 236 (353)
|||++|+..|+.+|.+++|+.++++|+.+|++.+.||+.++.+++++++.|.......++|+++++|+||++| +++..+
T Consensus 101 pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~ 179 (372)
T KOG1239|consen 101 PWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKP-KQLALP 179 (372)
T ss_pred cchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCc-chhhhh
Confidence 9999999999999999999999999999999999999999999999877777777788889999999999999 999999
Q ss_pred hhhHHHHHHHHHHHHHhhhcCcccccCCcccccCCCCcchHhHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 018597 237 FIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGF 316 (353)
Q Consensus 237 liQiPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~pDp~~ILPil~~~~~~~~~~l~~~~~~~~~p~~~~mk~~~~v~ 316 (353)
++|+|+|+++|.+||.|+.+++++.++|++||+||+.+||++++|+++++++..++|++.+.+....++...|+.+.+.+
T Consensus 180 v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (372)
T KOG1239|consen 180 VVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPDPLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRIL 259 (372)
T ss_pred hhcchhHHHHHHHHHHhhccccccchhhHHhcccccccCcchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988877777788899999999
Q ss_pred HHHHHHhhcchhhHHHHHHHHhhHHHHHHHhhh
Q 018597 317 AVLSIPLTMTFPKAIFCYWITSNFFSLVYGLGE 349 (353)
Q Consensus 317 ~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~lv~ 349 (353)
|++++++++++|+|+++||+ |+++|+.+.
T Consensus 260 ~ll~~~~t~~~~~a~~~ywl----~s~~~~~vl 288 (372)
T KOG1239|consen 260 PLLSLASTMQFPSAIFVYWL----FSLVQGLVL 288 (372)
T ss_pred hhhhhhhhhhhhhhHHhhhh----hHHHHHHHh
Confidence 99999999999999999999 999998875
No 15
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3.5e-33 Score=268.03 Aligned_cols=198 Identities=23% Similarity=0.437 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHH----HHHHHHhcccCCHHHHHHHH
Q 018597 140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLE----EIKQDMQDKAMDPMAVADGQ 215 (353)
Q Consensus 140 v~~l~~lL~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~----~i~~k~~~~~~D~~~~~~~~ 215 (353)
-.++.++++++|..+| +||++|+++|+++|++++|++++|+|+++||+.+||||+ +||+||++ |+++ .+
T Consensus 10 ~~il~~iL~f~y~~vg-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKd---Dpqk---~Q 82 (375)
T PRK02654 10 NNVMLPILDFFYGIVP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKN---DPQK---QQ 82 (375)
T ss_pred HhHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcC---CHHH---HH
Confidence 4577889999999998 999999999999999999999999999999999999985 69999975 6654 48
Q ss_pred HHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhh---------------------c------------------
Q 018597 216 KRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE---------------------K------------------ 256 (353)
Q Consensus 216 qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~---------------------~------------------ 256 (353)
+||++|||||| ||++||+|+++|+|||+++|.+||...- +
T Consensus 83 qEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p~~qi~~v~~~~~~~~~~~i~~~~~~h~ 161 (375)
T PRK02654 83 EEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLPSEQIAAVQPQPFKSKPQNIFITDGVHF 161 (375)
T ss_pred HHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhCccccccceeecccCCHHHHhhhcCCCcCCCCceEEEecCccc
Confidence 99999999999 9999999999999999999999998430 0
Q ss_pred ----------------------------------------------------------------------------Cccc
Q 018597 257 ----------------------------------------------------------------------------VPSF 260 (353)
Q Consensus 257 ----------------------------------------------------------------------------vpsl 260 (353)
+|++
T Consensus 162 ~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~~g~~~al~pgd~ti~~~ipg~ 241 (375)
T PRK02654 162 PVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSEDGTIEALAPGDATIQGTIPGL 241 (375)
T ss_pred eEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECCCCcEEEecCCceEEEEeecce
Confidence 0001
Q ss_pred c-cCCcccccCCCC-----cch-----HhHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHH--HHhhcch
Q 018597 261 K-NGGAFWFTDLST-----PDS-----FYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLS--IPLTMTF 327 (353)
Q Consensus 261 ~-~~g~lW~~dLt~-----pDp-----~~ILPil~~~~~~~~~~l~~~~~~~~~p~~~~mk~~~~v~~v~~--~~~~~~~ 327 (353)
. +.||+++.-|+. .|. ..++-+.++++.++++.++.+ ++.++|.++++.++ .|+++ +++++-+
T Consensus 242 aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~-~~~~~~qq~t~nki---tpv~~sgmflffpl 317 (375)
T PRK02654 242 AANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQ-GMPANPQQSTANKI---TPVMFSGMFLFFPL 317 (375)
T ss_pred ecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcC-CCCCChhHHHHHhh---hhHHHhhhHhcccc
Confidence 0 124444444443 232 135666778999999999865 44567776665544 44443 4566778
Q ss_pred hhHHHHHHHHhhHHHHHHHhhh
Q 018597 328 PKAIFCYWITSNFFSLVYGLGE 349 (353)
Q Consensus 328 Paal~lYW~tSnlfsl~Q~lv~ 349 (353)
|+|+.+||+..|+|+.+|+++.
T Consensus 318 pagvllym~ianifq~~qt~~l 339 (375)
T PRK02654 318 PAGVLLYMVIANIFQTLQTFLL 339 (375)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999865
No 16
>COG1422 Predicted membrane protein [Function unknown]
Probab=97.37 E-value=0.0011 Score=60.52 Aligned_cols=96 Identities=11% Similarity=0.190 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHhC---CCCc
Q 018597 156 FNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDK--AMDPMAVADGQKRMQNLFKEYG---VHPL 230 (353)
Q Consensus 156 lpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~--~~D~~~~~~~~qe~~~Lykk~g---v~P~ 230 (353)
.|--++|.++++++-+. +-+.-+-.-..+||+++|.++++.|++++++ ++|.+++++.|+|.+++..... -..|
T Consensus 44 ~~p~lvilV~avi~gl~-~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qf 122 (201)
T COG1422 44 LPPHLVILVAAVITGLY-ITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQF 122 (201)
T ss_pred cccHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567777777776653 2223333446789999999999999999874 3477777777776655543221 1123
Q ss_pred cchh-hhhhhHHHHHHHHHHHHH
Q 018597 231 TPLK-GLFIQGPVFISFFLAISN 252 (353)
Q Consensus 231 ~~~l-~~liQiPIfi~lf~alr~ 252 (353)
+++. -.++.||+|.-+++-+..
T Consensus 123 kPM~~~~v~tI~~F~Wl~~~~~~ 145 (201)
T COG1422 123 KPMLYISVLTIPFFAWLRWFVGT 145 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcc
Confidence 3222 223445555555555543
No 17
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=93.66 E-value=0.34 Score=43.01 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=45.8
Q ss_pred CChhHHHHHHHHHHHhhhhhhhHH-----HHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCC
Q 018597 155 GFNWWASIIVTTLLIRTATVPLLI-----NQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHP 229 (353)
Q Consensus 155 GlpW~~aIil~TvivRl~l~PL~i-----~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P 229 (353)
-+|..+.|++++++.-++.-=+.. +..+...++++++-+.++++++-+. ..+++.++.++++++..++---..
T Consensus 12 ~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01956_consen 12 LLPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDF--KKPKKLEKRQMELMEKQQEMMMMM 89 (168)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCc--cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777666554321111 1122333444445555554442221 234455455555554444432222
Q ss_pred ccch-hhhhhhHHHHHHHHHHHHHh
Q 018597 230 LTPL-KGLFIQGPVFISFFLAISNM 253 (353)
Q Consensus 230 ~~~~-l~~liQiPIfi~lf~alr~m 253 (353)
+++. ..+++++|+|..+++.....
T Consensus 90 mK~~~~~~v~~i~i~~wi~~~f~g~ 114 (168)
T PF01956_consen 90 MKPMFVTMVPQIPIFYWINYFFSGF 114 (168)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhc
Confidence 3332 23456666666666655543
No 18
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=80.90 E-value=4.4 Score=35.89 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=49.3
Q ss_pred HHhhchHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHhCCCCccchhhhhhhHHHHHHHHHHHHHhhh
Q 018597 187 LTLMRPRLEEIKQDMQDK--AMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAE 255 (353)
Q Consensus 187 m~~l~Pel~~i~~k~~~~--~~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~m~~ 255 (353)
|.+.+-+.+++++++++. ..|....++.+++.+++.++..=-....+.++++.+.+++.+|..++..-.
T Consensus 42 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~~f~ 112 (168)
T PF01956_consen 42 MDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINYFFS 112 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 566666666777776652 456667777777777777776655556677999999889999988877544
No 19
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.34 E-value=4.8 Score=40.62 Aligned_cols=180 Identities=17% Similarity=0.114 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccchhhh
Q 018597 157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGL 236 (353)
Q Consensus 157 pW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~~ 236 (353)
..+.++...|+++.+...|+...+.....-+...+|-...+...+..- -|-. ..|.++..+|+-.|++++.+|...
T Consensus 34 ~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~--~p~~--~lq~~l~~~h~~~g~pww~~i~~~ 109 (372)
T KOG1239|consen 34 FSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSW--RPVA--TLQNELERLHVYSGLPWWASIVAT 109 (372)
T ss_pred cccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhccc--Cchh--HHHHHHHHHHHHhCCcchHHHHHh
Confidence 356777777799999999999777777778888888888877666542 2322 358999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhh--------cCcccc----------cCCcccc-------cCCCCc-ch--HhHHHHHHHHHH
Q 018597 237 FIQGPVFISFFLAISNMAE--------KVPSFK----------NGGAFWF-------TDLSTP-DS--FYILPILTGLSF 288 (353)
Q Consensus 237 liQiPIfi~lf~alr~m~~--------~vpsl~----------~~g~lW~-------~dLt~p-Dp--~~ILPil~~~~~ 288 (353)
.+-++..+..+.+.++-.+ ..|++. +.++.|- ...... |+ +.+++....+++
T Consensus 110 t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~~~l~~~v~q~~l~~sf 189 (372)
T KOG1239|consen 110 TVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKPKQLALPVVQGPLFISF 189 (372)
T ss_pred HhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCcchhhhhhhcchhHHHH
Confidence 9999999999999974111 012111 1122231 111112 32 334444455555
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHH
Q 018597 289 LITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYG 346 (353)
Q Consensus 289 ~~~~~l~~~~~~~~~p~~~~mk~~~~v~~v~~~~~~~~~Paal~lYW~tSnlfsl~Q~ 346 (353)
+..++.... ...+.+. .....++-+..+.-...+.++..||++++...-.|+
T Consensus 190 f~air~ma~-~v~~f~t-----~g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~~~~~ 241 (372)
T KOG1239|consen 190 FMAIRVMAV-PVPSFTT-----GGLLWFPDLTGPDPLYILPGITLATLTLFIELGAET 241 (372)
T ss_pred HHHHHHhhc-cccccch-----hhHHhcccccccCcchhhHHHHHHHHHHHHHHHHHh
Confidence 555543331 1111111 133344444555666778888888888887766554
No 20
>COG1422 Predicted membrane protein [Function unknown]
Probab=77.99 E-value=5 Score=37.05 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=10.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhh
Q 018597 234 KGLFIQGPVFISFFLAISNMA 254 (353)
Q Consensus 234 l~~liQiPIfi~lf~alr~m~ 254 (353)
.|++.+.++.|-+|.=++.-.
T Consensus 123 kPM~~~~v~tI~~F~Wl~~~~ 143 (201)
T COG1422 123 KPMLYISVLTIPFFAWLRWFV 143 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555433
No 21
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=77.91 E-value=8.2 Score=41.51 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q 018597 193 RLEEIKQDMQDKAMDPMAVADGQKRMQNLFKE 224 (353)
Q Consensus 193 el~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk 224 (353)
.-+|+|++||+.+.||+-+.+.+|.++++.++
T Consensus 479 skqEvK~E~Ke~EGdP~iK~r~R~~~re~~~~ 510 (609)
T PRK12772 479 TKQEVKEEYKQDEGDPQIKAKIKQKQREMAMQ 510 (609)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 44788999999888998776666666666554
No 22
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.78 E-value=14 Score=37.17 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=21.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q 018597 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (353)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~~qe~~~Lyk 223 (353)
-+|+|++||+...||+-+.+.+|.++++-+
T Consensus 224 KqEVKdE~K~sEGdPeVKsr~Rq~~re~a~ 253 (363)
T COG1377 224 KQEVKDEYKQSEGDPEVKSRIRQMQREIAR 253 (363)
T ss_pred HHHHHHHHhhccCChhhhHHHHHHHHHHHH
Confidence 478889999988899865555555554443
No 23
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=74.83 E-value=13 Score=37.26 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q 018597 193 RLEEIKQDMQDKAMDPMAVADGQKRMQNLFKE 224 (353)
Q Consensus 193 el~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk 224 (353)
--+|+|++||+...||+-+.+.+|.++++.++
T Consensus 216 skqEvKdE~Ke~EGdP~iK~rrR~~~re~~~~ 247 (349)
T PRK12721 216 SKDDVKQEYKDSEGDPEIKQKRRELQSEIQSG 247 (349)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 34788899999888998766666666665543
No 24
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=73.38 E-value=15 Score=36.77 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=23.3
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q 018597 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLFKE 224 (353)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk 224 (353)
-+|+|++||+...||+-+.+.+|.++++.++
T Consensus 216 kqEvKdE~Ke~EGdP~iK~r~R~~~re~~~~ 246 (342)
T TIGR01404 216 KDEVKREYKEQEGDPEIKSKRRELHQEILSE 246 (342)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 4788899999888998766666666666554
No 25
>PRK09108 type III secretion system protein HrcU; Validated
Probab=72.48 E-value=16 Score=36.65 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q 018597 193 RLEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (353)
Q Consensus 193 el~~i~~k~~~~~~D~~~~~~~~qe~~~Lyk 223 (353)
--+|+|++||+...||+-+.+.+|.++++.+
T Consensus 218 SkqEvK~E~K~~EGdP~iK~rrRq~~re~a~ 248 (353)
T PRK09108 218 SKDEVKREHKESEGDPHIKGERKRLARELAF 248 (353)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3478899999988899866665555555553
No 26
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=71.72 E-value=17 Score=36.40 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q 018597 193 RLEEIKQDMQDKAMDPMAVADGQKRMQNLFKE 224 (353)
Q Consensus 193 el~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk 224 (353)
.-+|+|++||+...||+-+.+.+|.++++-++
T Consensus 216 skqEVKdE~K~~EGdP~iK~rrR~~~re~a~~ 247 (347)
T TIGR00328 216 TKQEVKDELKQSEGDPEVKGRIRQMQREAARR 247 (347)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 34788899999888998766666666655543
No 27
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=69.72 E-value=20 Score=36.10 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q 018597 193 RLEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (353)
Q Consensus 193 el~~i~~k~~~~~~D~~~~~~~~qe~~~Lyk 223 (353)
--+|+|++||+...||+-+.+.++.++++-+
T Consensus 223 skqEVKdE~Ke~EGdP~iK~rrR~~~re~a~ 253 (359)
T PRK05702 223 TKQEVKDEHKQSEGDPEVKGRIRQLQREMAR 253 (359)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3478889999988899866655555555544
No 28
>PRK06298 type III secretion system protein; Validated
Probab=69.14 E-value=21 Score=35.90 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q 018597 193 RLEEIKQDMQDKAMDPMAVADGQKRMQNLFKE 224 (353)
Q Consensus 193 el~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk 224 (353)
.-+|+|++||+...||+-+.+.++.++++.++
T Consensus 217 SkqEvKdE~K~~EGdP~iK~rrR~~~re~~~~ 248 (356)
T PRK06298 217 EKFEVKQEFKDTEGNPEIKGRRRQIAQEIAYE 248 (356)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 34788899999888998766666666665543
No 29
>PRK08156 type III secretion system protein SpaS; Validated
Probab=68.79 E-value=22 Score=35.90 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q 018597 193 RLEEIKQDMQDKAMDPMAVADGQKRMQNLFKE 224 (353)
Q Consensus 193 el~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk 224 (353)
--+|+|++||+...||+-+.+.+|.++++.++
T Consensus 211 SkqEvKdE~Ke~EGdP~iK~r~R~~~re~a~~ 242 (361)
T PRK08156 211 DKQEVKREYKEQEGNPEIKSKRREAHQEILSE 242 (361)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 34788899999888998666666666555543
No 30
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=67.23 E-value=24 Score=35.49 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q 018597 193 RLEEIKQDMQDKAMDPMAVADGQKRMQNLFK 223 (353)
Q Consensus 193 el~~i~~k~~~~~~D~~~~~~~~qe~~~Lyk 223 (353)
--+|+|++||+...||+-+.+.+|.++++.+
T Consensus 225 SkqEVKdE~Ke~EGdP~iK~r~Rq~~re~~~ 255 (358)
T PRK13109 225 TKQEIKDEHKQAEGDPSVKARLRSLAQDRAR 255 (358)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3478889999988899876665555555543
No 31
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=64.56 E-value=28 Score=35.36 Aligned_cols=32 Identities=9% Similarity=0.305 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q 018597 193 RLEEIKQDMQDKAMDPMAVADGQKRMQNLFKE 224 (353)
Q Consensus 193 el~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk 224 (353)
--+|+|++||+...||+-+.+.+|.++++.++
T Consensus 223 SkqEvKdE~K~~EGdP~iK~r~Rq~~re~a~~ 254 (386)
T PRK12468 223 TKQDIRDEFKNQEGDPHVKGRIRQQQRAMARR 254 (386)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 34788899998888998766666666665543
No 32
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=62.81 E-value=42 Score=28.32 Aligned_cols=63 Identities=19% Similarity=0.353 Sum_probs=35.3
Q ss_pred hcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Q 018597 153 FTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYG 226 (353)
Q Consensus 153 ~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~g 226 (353)
..|+||+.++++.. +--.+..|+.+.-.+...+.-.-.|.++++-+++.++ .++-++..+|||
T Consensus 11 ~~Gl~p~~~~~~~~-lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k----------~~~~~~~i~kyg 73 (121)
T PF06695_consen 11 ALGLPPWEAFLLAF-LGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKK----------AEKKSKKIEKYG 73 (121)
T ss_pred HcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHh
Confidence 46899887776654 4456667777666554444322245555544444321 222445567776
No 33
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=56.82 E-value=48 Score=27.62 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=22.1
Q ss_pred HHhhchHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 018597 187 LTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQ 219 (353)
Q Consensus 187 m~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~ 219 (353)
....+-++.++.+...+...|+++..+.++|++
T Consensus 38 ~~iyr~qL~ELe~d~~~G~l~~~e~~~~~~El~ 70 (117)
T TIGR03142 38 LAVYRDRLAELERDLAEGLLDEAEAEAARAELQ 70 (117)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345778888887777665557776656666654
No 34
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=56.33 E-value=18 Score=32.73 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=25.1
Q ss_pred HHHHHHHHHH-hCCCCccchhh----------hhhhHHHHHHHHHHHHHh
Q 018597 215 QKRMQNLFKE-YGVHPLTPLKG----------LFIQGPVFISFFLAISNM 253 (353)
Q Consensus 215 ~qe~~~Lykk-~gv~P~~~~l~----------~liQiPIfi~lf~alr~m 253 (353)
..++.+|||| +|++|=+|++| .-|+.-+|+.+|..+++.
T Consensus 37 ~~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~~ 86 (175)
T PF05280_consen 37 RERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRKN 86 (175)
T ss_dssp HHHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHhc
Confidence 4567899999 89998888776 347888888888888763
No 35
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.23 E-value=47 Score=28.76 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHh
Q 018597 158 WWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQ 202 (353)
Q Consensus 158 W~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~ 202 (353)
-.+.|++..+++|+. | .+.|.+. .++-||++.|.++.
T Consensus 15 LvvGi~IG~li~Rlt--~---~~~k~q~---~~q~ELe~~K~~ld 51 (138)
T COG3105 15 LVVGIIIGALIARLT--N---RKLKQQQ---KLQYELEKVKAQLD 51 (138)
T ss_pred HHHHHHHHHHHHHHc--c---hhhhhHH---HHHHHHHHHHHHHH
Confidence 445566666666652 2 2333222 33445666555554
No 36
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.40 E-value=84 Score=27.23 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=8.7
Q ss_pred ChhHHHHHHHHHHH
Q 018597 156 FNWWASIIVTTLLI 169 (353)
Q Consensus 156 lpW~~aIil~Tviv 169 (353)
..|-.++|.+.|.+
T Consensus 6 ~~W~~a~igLvvGi 19 (138)
T COG3105 6 MTWEYALIGLVVGI 19 (138)
T ss_pred HHHHHHHHHHHHHH
Confidence 36777777665544
No 37
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=50.51 E-value=41 Score=36.29 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Q 018597 193 RLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEY 225 (353)
Q Consensus 193 el~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~ 225 (353)
--+|+|++||+...||+-+.+.+|.++++.++.
T Consensus 514 SKQEVKdE~KEsEGDPeIKaRRRqlqREmar~r 546 (646)
T PRK12773 514 TPSEAKREAKESDGDRSLQARRRQLARDMMNKR 546 (646)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc
Confidence 457889999998889987766666666666433
No 38
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=47.24 E-value=28 Score=34.71 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=17.5
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q 018597 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLF 222 (353)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~~qe~~~Ly 222 (353)
-+|+|+++|+...||+-+.+.++.++++-
T Consensus 219 kqEvK~E~Ke~EGdP~iK~rrR~~~re~~ 247 (343)
T PF01312_consen 219 KQEVKDEHKESEGDPEIKSRRRQLQREMA 247 (343)
T ss_dssp HHHH--HHHCCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 47889999998889986555444444443
No 39
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.60 E-value=78 Score=23.33 Aligned_cols=37 Identities=16% Similarity=0.470 Sum_probs=22.8
Q ss_pred HHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH--HhCCCCc
Q 018597 187 LTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFK--EYGVHPL 230 (353)
Q Consensus 187 m~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lyk--k~gv~P~ 230 (353)
+..++-|.++|++...+ +.+--+++.+||. ..|+|||
T Consensus 16 i~tvk~en~~i~~~ve~-------i~envk~ll~lYE~Vs~~iNPF 54 (55)
T PF05377_consen 16 INTVKKENEEISESVEK-------IEENVKDLLSLYEVVSNQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHccCCCC
Confidence 44555666666555542 3333466778886 4799997
No 40
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=42.13 E-value=2.3e+02 Score=24.53 Aligned_cols=64 Identities=22% Similarity=0.387 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHhhchHHHHHHHHHhcc--------cCCHHHHHHHHHHHHHHHHH
Q 018597 157 NWWASIIVTTLLIRTATVPLLIN--QLKSTSKLTLMRPRLEEIKQDMQDK--------AMDPMAVADGQKRMQNLFKE 224 (353)
Q Consensus 157 pW~~aIil~TvivRl~l~PL~i~--q~r~~~Km~~l~Pel~~i~~k~~~~--------~~D~~~~~~~~qe~~~Lykk 224 (353)
.|.+.|=..|-++ ..++-+.+. |.|.++ .++-++++|-...+++ ..|++++.+.+++..++-++
T Consensus 40 tWQLviNt~ttIi-tFlmvfLIQn~q~Rd~~---al~~KLdeLi~~~~~a~n~li~iE~l~~~el~~~~~~~~~~~~~ 113 (132)
T PF04120_consen 40 TWQLVINTATTII-TFLMVFLIQNTQNRDTK---ALQAKLDELIRAVKEARNELIDIEDLTEEELEEIRKRYERLAEQ 113 (132)
T ss_pred hHHHHHccHHHHH-HHHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHH
Confidence 5777776777777 333222222 233333 4555666664444421 23566665555555544443
No 41
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=41.27 E-value=42 Score=25.42 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Q 018597 192 PRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVH 228 (353)
Q Consensus 192 Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~ 228 (353)
.+++++-+.|.++..+.+.+.+..+++.+.|+++|.-
T Consensus 17 ~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~ 53 (76)
T PF08479_consen 17 EELQAILAPYIGRCLTLADLQQLADALTNYYREKGYI 53 (76)
T ss_dssp CHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCce
Confidence 3777887888877777788888899999999999974
No 42
>PRK11546 zraP zinc resistance protein; Provisional
Probab=40.03 E-value=2.4e+02 Score=24.83 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=11.2
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 018597 205 AMDPMAVADGQKRMQNLF 222 (353)
Q Consensus 205 ~~D~~~~~~~~qe~~~Ly 222 (353)
+-|++++.+..+|+.+|.
T Consensus 85 ~pD~~kI~aL~kEI~~Lr 102 (143)
T PRK11546 85 PPDSSKINAVAKEMENLR 102 (143)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 347777766677665443
No 43
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=39.98 E-value=2.8e+02 Score=25.12 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhCCC
Q 018597 215 QKRMQNLFKEYGVH 228 (353)
Q Consensus 215 ~qe~~~Lykk~gv~ 228 (353)
++|-+.+.||+.|.
T Consensus 103 ekderil~kkneVa 116 (170)
T PF07074_consen 103 EKDERILWKKNEVA 116 (170)
T ss_pred HHHHHHHHHhhhhh
Confidence 34445677776554
No 44
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.52 E-value=1.3e+02 Score=30.48 Aligned_cols=91 Identities=8% Similarity=0.134 Sum_probs=48.5
Q ss_pred HHHHHHHHHHH---hhcCC---hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-hhchHHHHH--HHHHhcccCCHHHH
Q 018597 141 AALQHFIDAMH---NFTGF---NWWASIIVTTLLIRTATVPLLINQLKSTSKLT-LMRPRLEEI--KQDMQDKAMDPMAV 211 (353)
Q Consensus 141 ~~l~~lL~~lh---~~~Gl---pW~~aIil~TvivRl~l~PL~i~q~r~~~Km~-~l~Pel~~i--~~k~~~~~~D~~~~ 211 (353)
.+++|.|..+- .+.|. .-..|+|+..++...+-+|+-+..+.. .|+. .-+|--.++ +++|++++ |.+.
T Consensus 254 ~ilmWtLqli~lvl~Yfsvq~p~~a~A~iI~~lc~~~l~~pIrw~~~~~-~kv~r~fkpl~rRlLtEeEYeeQa-eveT- 330 (452)
T KOG3817|consen 254 TILMWTLQLIGLVLAYFSVQHPSAAIAAIIMVLCFVALYFPIRWTNQIK-FKVRRRFKPLKRRLLTEEEYEEQA-EVET- 330 (452)
T ss_pred hHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHhhccccchhhcCHHHHHHHH-HHHH-
Confidence 45666665443 23441 233455666666666778997765432 2221 122222222 45666432 2222
Q ss_pred HHHHHHHHHHHHHhCCCCccchh
Q 018597 212 ADGQKRMQNLFKEYGVHPLTPLK 234 (353)
Q Consensus 212 ~~~~qe~~~Lykk~gv~P~~~~l 234 (353)
.+.-.|+++..+|-+|++|+-+.
T Consensus 331 ~kaLaeLReycnkpd~~~Wkvvg 353 (452)
T KOG3817|consen 331 SKALAELREYCNKPDCKQWKVVG 353 (452)
T ss_pred HHHHHHHHHHhCCCCCchhhhhh
Confidence 23346678888999999997654
No 45
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=35.73 E-value=1.2e+02 Score=20.91 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHHHHhCCC
Q 018597 207 DPMAVADGQKRMQNLFKEYGVH 228 (353)
Q Consensus 207 D~~~~~~~~qe~~~Lykk~gv~ 228 (353)
++.+......+-++|+.+||+.
T Consensus 20 ~~~EA~~A~~kAq~Lm~ky~i~ 41 (43)
T PF10979_consen 20 NEHEAEAALAKAQRLMAKYGID 41 (43)
T ss_pred CHHHHHHHHHHHHHHHHHhCCc
Confidence 4545445566778899999985
No 46
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=35.66 E-value=20 Score=35.62 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=36.8
Q ss_pred ccccccccccchhhhHHHhhc---cCcchhHHHHHhcC--------Cc--ccHHHHHHHHHHHHhhcC
Q 018597 101 IELISDVADVFTETTVQAIAN---QAPAVNEVAIAAAD--------SF--LPVAALQHFIDAMHNFTG 155 (353)
Q Consensus 101 ~~~~~~~~~v~~~~~~~~~~~---~~p~~~e~~~~~~~--------~~--~pv~~l~~lL~~lh~~~G 155 (353)
+++..+...+.++.+.+ +.. .||...+++.+.++ || +...++.|+|+++|.++|
T Consensus 300 ~~~~~~~~~v~pg~~~~-~~~~ly~GPK~~~~L~~~~~~Le~~VDyGw~~~iakPlf~lL~~~~~~vg 366 (366)
T TIGR03593 300 AGFVSPVVTVAPGQSAT-IKSRLYAGPKEQDVLKAIAPGLDLAVDYGWLWFIAKPLFWLLDFFHSLVG 366 (366)
T ss_pred EEEecCceEECCCCEEE-EEEEEEecHHHHHHHHHHhcCcccEEeeecHHHHHHHHHHHHHHHHHhcC
Confidence 45555666666665542 222 68888888776653 44 457899999999999876
No 47
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=34.93 E-value=93 Score=28.82 Aligned_cols=44 Identities=9% Similarity=0.240 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q 018597 180 QLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKE 224 (353)
Q Consensus 180 q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk 224 (353)
......++..+.-|+++++++++..+ ...+..+.+.|++++.++
T Consensus 177 ~~~~~~~i~~L~kei~~L~~~~~kEk-q~nrkveln~elk~l~~e 220 (221)
T PF14335_consen 177 RIERLEQIEKLEKEIAKLKKKIKKEK-QFNRKVELNTELKKLKKE 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhc
Confidence 34455677889999999999998533 445566788898888775
No 48
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=34.57 E-value=69 Score=30.33 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCccchhh
Q 018597 206 MDPMAVADGQKRMQNLFKEYGVHPLTPLKG 235 (353)
Q Consensus 206 ~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~ 235 (353)
.|+.++ -..+++.|+++|+.|++|..|
T Consensus 26 ~~R~~l---v~~L~~~Y~~~gIeP~RG~s~ 52 (231)
T PF09958_consen 26 LDREEL---VELLREVYEENGIEPFRGLSP 52 (231)
T ss_pred CCHHHH---HHHHHHHHHHcCCCcCCCCCc
Confidence 466554 567899999999999999875
No 49
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=32.65 E-value=3.5e+02 Score=23.91 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=12.8
Q ss_pred hcCChhHHHH------HHHHHHHhhhhhhhHHHH
Q 018597 153 FTGFNWWASI------IVTTLLIRTATVPLLINQ 180 (353)
Q Consensus 153 ~~GlpW~~aI------il~TvivRl~l~PL~i~q 180 (353)
..|++||.-+ +++.++++-+++|...+.
T Consensus 13 ~~~~~~~t~~~~iInFliL~~lL~~~l~~pi~~~ 46 (173)
T PRK13453 13 AGGVEWGTVIVTVLTFIVLLALLKKFAWGPLKDV 46 (173)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566665332 233344444455554443
No 50
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=32.14 E-value=1.5e+02 Score=27.36 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Q 018597 173 TVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVH 228 (353)
Q Consensus 173 l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~ 228 (353)
+.|..--++..-...+.++-|++++|+|+.+.+ ...+...-|+|++|++
T Consensus 113 l~p~L~vA~srf~~~~~L~~el~~~k~~L~~rK-------~ierAKglLM~~~g~s 161 (194)
T COG3707 113 LLPILDVAVSRFEERRALRRELAKLKDRLEERK-------VIERAKGLLMKRRGLS 161 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCC
Confidence 467777777777888888999999999998521 2233344577788764
No 51
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=29.93 E-value=1.4e+02 Score=24.80 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=14.0
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHH
Q 018597 195 EEIKQDMQDKAMDPMAVADGQKRM 218 (353)
Q Consensus 195 ~~i~~k~~~~~~D~~~~~~~~qe~ 218 (353)
+++++|..+ .+|++++++++|.
T Consensus 81 ~~lqkRle~--l~~eE~~~L~~ei 102 (104)
T PF11460_consen 81 EELQKRLEE--LSPEELEALQAEI 102 (104)
T ss_pred HHHHHHHHh--CCHHHHHHHHHHh
Confidence 467777765 5677765555554
No 52
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.86 E-value=1.1e+02 Score=28.29 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Q 018597 184 TSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYG 226 (353)
Q Consensus 184 ~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~g 226 (353)
+.++..++-|=+++|..|+.|..+-..+...++++.++-+.++
T Consensus 48 ~eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~ 90 (211)
T COG3167 48 LEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFD 90 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3455566667777888887643333333344555555544443
No 53
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=29.66 E-value=2.4e+02 Score=28.13 Aligned_cols=116 Identities=10% Similarity=0.128 Sum_probs=64.3
Q ss_pred HHhcCCcccH-HHHHHHHHHHHhh------cCChhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHhhchHHHHHHHHHh
Q 018597 131 IAAADSFLPV-AALQHFIDAMHNF------TGFNWWASIIVTTLLIRTA-TVPLLINQLKSTSKLTLMRPRLEEIKQDMQ 202 (353)
Q Consensus 131 ~~~~~~~~pv-~~l~~lL~~lh~~------~GlpW~~aIil~TvivRl~-l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~ 202 (353)
.++...|.|. ..+|+.+..-+.. +|+--...|++..+.+-.+ .+=.+.+-.|....|+. --|+.++ |.+
T Consensus 105 vain~wy~pf~d~~q~als~~~~~t~~~fY~~~~vF~~IA~~~v~i~vln~ffvShyiFrWRtAMn~--~ym~~W~-klr 181 (405)
T COG1133 105 VAVNAWYGPFYDLIQNALSSPPKVTAGQFYSLVGVFLGIALIAVVISVLNNFFVSHYIFRWRTAMNE--YYMANWQ-KLR 181 (405)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhH--HHHHhhh-hhc
Confidence 3333455553 4666655543332 2233344555666666555 45556666777666664 2233333 333
Q ss_pred cccCCHHHHHHHHHHHH---HHHHHhCCCCccchhhhhhhHHHHHHHHHHHHH
Q 018597 203 DKAMDPMAVADGQKRMQ---NLFKEYGVHPLTPLKGLFIQGPVFISFFLAISN 252 (353)
Q Consensus 203 ~~~~D~~~~~~~~qe~~---~Lykk~gv~P~~~~l~~liQiPIfi~lf~alr~ 252 (353)
.-.... ++.|+..+ +..+.-|++-.+.+..+++-+||.+.+...+.+
T Consensus 182 hIEGas---QRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL~~ls~~Vs~ 231 (405)
T COG1133 182 HIEGAS---QRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVLFTLSAHVSE 231 (405)
T ss_pred cccchH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 211122 23455544 455677888888888888899998888666553
No 54
>PHA00327 minor capsid protein
Probab=29.30 E-value=80 Score=28.42 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccc
Q 018597 180 QLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTP 232 (353)
Q Consensus 180 q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~ 232 (353)
+++.-+-++.+.-+-.++||+|.+. + .|++ ++=+|+.|+||+..
T Consensus 37 aqkqNa~~~~ia~rqmafQErMSnT-----A---~qR~-~eDmkkAGLNpLla 80 (187)
T PHA00327 37 AQKQNATAKQIARRQMAFQERMSNT-----A---YQRA-MEDMKKAGLNPLLA 80 (187)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhhhH-----H---HHHH-HHHHHHcCccHHHH
Confidence 3444444555555666777777641 1 2333 34558999999744
No 55
>PRK12860 transcriptional activator FlhC; Provisional
Probab=28.30 E-value=3.1e+02 Score=25.19 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=30.3
Q ss_pred HHHHHHHHHHh-CCCCccchhhh----------hhhHHHHHHHHHHHHHh
Q 018597 215 QKRMQNLFKEY-GVHPLTPLKGL----------FIQGPVFISFFLAISNM 253 (353)
Q Consensus 215 ~qe~~~Lykk~-gv~P~~~~l~~----------liQiPIfi~lf~alr~m 253 (353)
+.++.+||||. |.+|=+|++|- =|+.-+|+.+|..+.+-
T Consensus 37 ~~rl~~Lyke~~G~SpPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~~ 86 (189)
T PRK12860 37 RDRLIRLYKEVRGVSPPKGMLPFSTDWFMTWLANIHASLFYNAYRFLKNE 86 (189)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCchHHHcCchhhhHHHHHHHHHHHHHhc
Confidence 45678999986 99988887762 47788888888888753
No 56
>PRK12722 transcriptional activator FlhC; Provisional
Probab=27.87 E-value=3.2e+02 Score=25.04 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=30.3
Q ss_pred HHHHHHHHHHh-CCCCccchhh----------hhhhHHHHHHHHHHHHHh
Q 018597 215 QKRMQNLFKEY-GVHPLTPLKG----------LFIQGPVFISFFLAISNM 253 (353)
Q Consensus 215 ~qe~~~Lykk~-gv~P~~~~l~----------~liQiPIfi~lf~alr~m 253 (353)
+.++.+||||. |.+|=+|++| .=|+.-+|+.+|..+.+.
T Consensus 37 ~~rl~~Lyke~~G~spPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~~ 86 (187)
T PRK12722 37 RERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIYQFLLKT 86 (187)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCchHHHcccchhhHHHHHHHHHHHHHHc
Confidence 45677899986 9998888776 347778888888888764
No 57
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=27.35 E-value=2.5e+02 Score=25.19 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=9.6
Q ss_pred HHHHhhchHHHHHHHHHh
Q 018597 185 SKLTLMRPRLEEIKQDMQ 202 (353)
Q Consensus 185 ~Km~~l~Pel~~i~~k~~ 202 (353)
.|.+.++.++++++++++
T Consensus 57 ~~~~~l~~~l~~~~~el~ 74 (180)
T PF04678_consen 57 SRERQLRKRLEELRQELA 74 (180)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445556666655554
No 58
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.31 E-value=2e+02 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.5
Q ss_pred HHHHHHHHhhchHHHHHHHHHhc
Q 018597 181 LKSTSKLTLMRPRLEEIKQDMQD 203 (353)
Q Consensus 181 ~r~~~Km~~l~Pel~~i~~k~~~ 203 (353)
.+..++.++++-|+++++++++.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~ 58 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNA 58 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHc
Confidence 45667888899999999999875
No 59
>PRK06771 hypothetical protein; Provisional
Probab=25.76 E-value=2.7e+02 Score=22.77 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhc
Q 018597 158 WWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQD 203 (353)
Q Consensus 158 W~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~ 203 (353)
||.-|++..+..=.+.--++-...+..+++..+.-+++.+.++.+-
T Consensus 3 ~~ili~~~~~~~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi 48 (93)
T PRK06771 3 FWMIIPIAIFGFIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGI 48 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5555554333322222333333345667888888899999888764
No 60
>KOG2966 consensus Uncharacterized conserved protein [General function prediction only]
Probab=25.71 E-value=4.1e+02 Score=26.42 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=12.6
Q ss_pred ccchhhhhhhHHHHHHH
Q 018597 230 LTPLKGLFIQGPVFISF 246 (353)
Q Consensus 230 ~~~~l~~liQiPIfi~l 246 (353)
|+|+.-+.+|.-+|+=+
T Consensus 211 WaGLg~l~vQtg~f~RL 227 (325)
T KOG2966|consen 211 WAGLGYLAVQTGGFARL 227 (325)
T ss_pred HhhHHHHHHHHhHhhhh
Confidence 66777788887777655
No 61
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.51 E-value=2.7e+02 Score=24.95 Aligned_cols=13 Identities=8% Similarity=0.276 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhhh
Q 018597 160 ASIIVTTLLIRTA 172 (353)
Q Consensus 160 ~aIil~TvivRl~ 172 (353)
.++.+.-++-|+.
T Consensus 109 f~LfL~l~I~r~~ 121 (192)
T PF05529_consen 109 FALFLSLVIRRVH 121 (192)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444554
No 62
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=24.34 E-value=4.2e+02 Score=26.23 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 018597 159 WASIIVTTLLIRTATVPLLINQLKSTSKLTL 189 (353)
Q Consensus 159 ~~aIil~TvivRl~l~PL~i~q~r~~~Km~~ 189 (353)
|.+|+++|++.=..+.=..+-..+.+.|+++
T Consensus 198 W~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~ 228 (310)
T PF10319_consen 198 WIGIIILTIISSYSIILYFVLGYKIMKKLNK 228 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555544444455566776666653
No 63
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=24.28 E-value=2.7e+02 Score=26.47 Aligned_cols=90 Identities=7% Similarity=0.114 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhh------cCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh-h--chHHHHH-HHHHhcccCCHHH
Q 018597 141 AALQHFIDAMHNF------TGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTL-M--RPRLEEI-KQDMQDKAMDPMA 210 (353)
Q Consensus 141 ~~l~~lL~~lh~~------~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~-l--~Pel~~i-~~k~~~~~~D~~~ 210 (353)
.+++|.|..+--. ..-.-+.+++++.++.+.+..|....... ..|.+. . .|+-..+ +++|++.. ..+
T Consensus 128 ~~v~W~Lqligl~lI~~ss~~~~~a~~~i~~~l~~~~l~~~~~~~~~~-~~~~~~~~~~p~~rr~LteeEy~~q~--~~e 204 (249)
T PF10225_consen 128 NFVKWALQLIGLVLIYFSSQDPEFAFAAIILLLLWKSLYYPISWLKRV-RRKYRRRFTSPPKRRLLTEEEYEEQG--ERE 204 (249)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHhheecCCCccccccccchhhcc--hHh
Confidence 4566666543321 11234566677777777777777654321 122221 1 3444444 45565422 222
Q ss_pred HHHHHHHHHHHHHHhCCCCccch
Q 018597 211 VADGQKRMQNLFKEYGVHPLTPL 233 (353)
Q Consensus 211 ~~~~~qe~~~Lykk~gv~P~~~~ 233 (353)
..+.-+|+++..+.-++++++.+
T Consensus 205 T~kaL~eLr~~c~sp~~~~W~~~ 227 (249)
T PF10225_consen 205 TRKALEELREYCNSPDCNSWKTV 227 (249)
T ss_pred HHHHHHHHHHHhCCCCCCcchhh
Confidence 22233445555666677777543
No 64
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=23.54 E-value=1.3e+02 Score=23.85 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCC
Q 018597 207 DPMAVADGQKRMQNLFKEYGVHP 229 (353)
Q Consensus 207 D~~~~~~~~qe~~~Lykk~gv~P 229 (353)
||+-+.+.++.-.++|+++|+++
T Consensus 16 dp~~rerF~~DPea~~~~~gLt~ 38 (81)
T cd07922 16 DPGLIERFQDDPSAVFEEYGLTP 38 (81)
T ss_pred CHHHHHHHHHCHHHHHHHcCCCH
Confidence 44444444444555555555543
No 65
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.93 E-value=3.2e+02 Score=22.50 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=13.8
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 018597 234 KGLFIQGPVFISFFLAIS 251 (353)
Q Consensus 234 l~~liQiPIfi~lf~alr 251 (353)
++.-+-+|+++++|.+.-
T Consensus 48 IG~~~v~pil~G~~lG~W 65 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVGIW 65 (100)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355677899999998874
No 66
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=22.64 E-value=1.5e+02 Score=22.51 Aligned_cols=36 Identities=8% Similarity=0.345 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCC-ccchhhhhhhHHHHHHHHHHH
Q 018597 215 QKRMQNLFKEYGVHP-LTPLKGLFIQGPVFISFFLAI 250 (353)
Q Consensus 215 ~qe~~~Lykk~gv~P-~~~~l~~liQiPIfi~lf~al 250 (353)
.+-.++++|++|+.- ++|+.+.++.....-++++++
T Consensus 47 ~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~ 83 (95)
T PF00153_consen 47 WQCLRKIYKEEGIRGLYRGFGPSLLRSIPYTAIYFGL 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhccccCChHHHHHHHHHHHHHHHHH
Confidence 456788999999875 467766555433333343333
No 67
>PRK11677 hypothetical protein; Provisional
Probab=22.48 E-value=3.1e+02 Score=23.77 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHH
Q 018597 147 IDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDK-AMDPMAVADGQKRMQNLFK 223 (353)
Q Consensus 147 L~~lh~~~GlpW~~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~-~~D~~~~~~~~qe~~~Lyk 223 (353)
+.|+....| -.+.|++..++.|+ +-|=.-++.+-...+...+-|++.-|++..+- ....+-+..+.+..++||.
T Consensus 1 M~W~~a~i~--livG~iiG~~~~R~-~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~ 75 (134)
T PRK11677 1 MTWEYALIG--LVVGIIIGAVAMRF-GNRKLRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQ 75 (134)
T ss_pred CcHHHHHHH--HHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 68
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=21.96 E-value=4.9e+02 Score=27.45 Aligned_cols=89 Identities=17% Similarity=0.332 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCCccchhhhhhh
Q 018597 160 ASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQ 239 (353)
Q Consensus 160 ~aIil~TvivRl~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P~~~~l~~liQ 239 (353)
+.+++++.++|+++.+..+.++-+.++-+ ++++|++-+ + .+.. |.|+++...|-=. |. .-+|
T Consensus 316 l~~vi~~~~lrl~~~r~hLQaYLnlA~~~-----~~~~r~eag-~-i~~~---e~q~kv~~~f~Yl-------~v-vaLQ 377 (486)
T PF10268_consen 316 LWLVILLCLLRLALMRPHLQAYLNLAQDR-----VEQMRKEAG-R-ITNV---ELQRKVARVFYYL-------CV-VALQ 377 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhccC-C-CCHH---HHHHHHHHHHHHH-------HH-HHHH
Confidence 45667778888888888888777665543 333332211 1 1222 2344433332211 22 1223
Q ss_pred --HHHHHHHHHHHHHhhhcCcccccCCcccccCCCCc
Q 018597 240 --GPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTP 274 (353)
Q Consensus 240 --iPIfi~lf~alr~m~~~vpsl~~~g~lW~~dLt~p 274 (353)
.|+.+.++.++-.-. .||+-| -....+
T Consensus 378 y~~P~il~l~~~lllKt-------lg~~sW-g~~~~~ 406 (486)
T PF10268_consen 378 YLAPVILLLFFALLLKT-------LGGYSW-GLYAEP 406 (486)
T ss_pred HHHHHHHHHHHHHHHHh-------hccCCC-CCCCCc
Confidence 688888877764321 278889 344443
No 69
>PF14802 TMEM192: TMEM192 family
Probab=21.64 E-value=4.9e+02 Score=24.66 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=41.4
Q ss_pred hhhhhHHHHHHHHHHHHhhchHHHHHHHHHh---------------cccCCHHHHHHHHHHHHHHHHHhCC
Q 018597 172 ATVPLLINQLKSTSKLTLMRPRLEEIKQDMQ---------------DKAMDPMAVADGQKRMQNLFKEYGV 227 (353)
Q Consensus 172 ~l~PL~i~q~r~~~Km~~l~Pel~~i~~k~~---------------~~~~D~~~~~~~~qe~~~Lykk~gv 227 (353)
+..|..+.-.....|.+..+|.=+.+++.+. ....+.++.-|.|.++-+..|+||.
T Consensus 156 ~~~~~~i~Yiv~V~kFN~~~~~PDv~~~~~~~~~~~~~~~~~e~g~r~~~~~eellEkQadlI~yLk~hn~ 226 (236)
T PF14802_consen 156 VLLPFLIIYIVKVRKFNKARPPPDVLREEYSRSYLYPSSSSSELGFRDGSSLEELLEKQADLIRYLKEHNA 226 (236)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhhccccCCCCCCccccCCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888877666665554 1123667788889999898899874
No 70
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.59 E-value=6.5e+02 Score=24.67 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHH----HHHHHHHhhchHHHHHHHHHh
Q 018597 157 NWWASIIVTTLLIRTATVPLLINQL----KSTSKLTLMRPRLEEIKQDMQ 202 (353)
Q Consensus 157 pW~~aIil~TvivRl~l~PL~i~q~----r~~~Km~~l~Pel~~i~~k~~ 202 (353)
-|+..++++.+.+..+++|+.-+.. +..-.....++++.++...-.
T Consensus 3 fw~~~a~~~~~~~~~l~~pL~~~~~~~~~~~~~~~~~yr~~l~El~~~~~ 52 (287)
T COG4235 3 FWLAAALLTLAAAALLLLPLARAREAAQDRDELNLAVYRDRLAELERDAA 52 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhhcchhhhhhhhHHHHHHHh
Confidence 4888888888888999999988766 222234456777777755443
No 71
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=21.07 E-value=2.1e+02 Score=24.77 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhCCCC
Q 018597 213 DGQKRMQNLFKEYGVHP 229 (353)
Q Consensus 213 ~~~qe~~~Lykk~gv~P 229 (353)
+.-++++++.++||++|
T Consensus 56 ~~l~~i~~~~~~~Git~ 72 (134)
T PRK10328 56 EKINTWLELMKADGINP 72 (134)
T ss_pred HHHHHHHHHHHHhCCCH
Confidence 34456788899999987
No 72
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=20.55 E-value=6.4e+02 Score=23.69 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=18.8
Q ss_pred hhchHHHHHHHHHhcccCCHH----HHHHHHHHHHHHHHHhCC
Q 018597 189 LMRPRLEEIKQDMQDKAMDPM----AVADGQKRMQNLFKEYGV 227 (353)
Q Consensus 189 ~l~Pel~~i~~k~~~~~~D~~----~~~~~~qe~~~Lykk~gv 227 (353)
+++-|...-|++|-..+=||. ++.|.=++.++.+++.|.
T Consensus 123 e~q~q~a~ck~~Yl~n~Cd~~~rvPAi~E~C~kwkqcm~~~~~ 165 (230)
T KOG4503|consen 123 EIQHQIAECKTSYLINKCDPATRVPAIEELCSKWKQCMKNNGY 165 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHhccCc
Confidence 344455555666643222331 344445555555555443
No 73
>COG5085 Predicted membrane protein [Function unknown]
Probab=20.55 E-value=6.4e+02 Score=23.69 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=18.8
Q ss_pred hhchHHHHHHHHHhcccCCHH----HHHHHHHHHHHHHHHhCC
Q 018597 189 LMRPRLEEIKQDMQDKAMDPM----AVADGQKRMQNLFKEYGV 227 (353)
Q Consensus 189 ~l~Pel~~i~~k~~~~~~D~~----~~~~~~qe~~~Lykk~gv 227 (353)
+++-|...-|++|-..+=||. ++.|.=++.++.+++.|.
T Consensus 123 e~q~q~a~ck~~Yl~n~Cd~~~rvPAi~E~C~kwkqcm~~~~~ 165 (230)
T COG5085 123 EIQHQIAECKTSYLINKCDPATRVPAIEELCSKWKQCMKNNGY 165 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHhccCc
Confidence 344455555666643222331 344445555555555443
No 74
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.39 E-value=3.5e+02 Score=19.65 Aligned_cols=19 Identities=11% Similarity=0.511 Sum_probs=9.3
Q ss_pred HHHHHhhchHHHHHHHHHh
Q 018597 184 TSKLTLMRPRLEEIKQDMQ 202 (353)
Q Consensus 184 ~~Km~~l~Pel~~i~~k~~ 202 (353)
..+.+.++.|+++++++.+
T Consensus 47 r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444456655555443
Done!