Query 018597
Match_columns 353
No_of_seqs 205 out of 1170
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 03:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c01_A Surface presentation of 45.7 31 0.0011 23.7 4.3 28 195-222 4-31 (48)
2 3bzy_A ESCU; auto cleavage pro 38.3 46 0.0016 23.4 4.4 29 194-222 9-37 (54)
3 1g6u_A Domain swapped dimer; d 30.4 72 0.0025 21.0 4.0 34 188-225 3-36 (48)
4 4abx_A DNA repair protein RECN 29.5 1.4E+02 0.0049 25.1 7.2 24 206-229 119-145 (175)
5 2avu_E Flagellar transcription 24.1 1.5E+02 0.0053 25.9 6.4 38 215-252 37-85 (192)
6 2kmu_A ATP-dependent DNA helic 22.6 66 0.0023 22.7 3.0 43 184-226 3-48 (56)
7 3k66_A Beta-amyloid-like prote 22.0 1.1E+02 0.0037 27.9 5.0 39 181-219 27-66 (239)
8 3lay_A Zinc resistance-associa 19.8 2.4E+02 0.0083 24.2 6.7 14 205-218 109-122 (175)
9 1z65_A PRPLP, prion-like prote 18.1 81 0.0028 19.3 2.2 15 157-171 7-21 (30)
10 2ca5_A MXIH; transport protein 17.6 1.8E+02 0.006 22.3 4.5 31 190-220 26-56 (85)
No 1
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=45.73 E-value=31 Score=23.68 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=19.5
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHH
Q 018597 195 EEIKQDMQDKAMDPMAVADGQKRMQNLF 222 (353)
Q Consensus 195 ~~i~~k~~~~~~D~~~~~~~~qe~~~Ly 222 (353)
+++|+.||+...||+-+.+.++.++++.
T Consensus 4 qEvK~E~Ke~EGdP~iK~~~R~~~~e~a 31 (48)
T 3c01_A 4 EEVKREMKEQEGNPEVKSKRREVHMEIL 31 (48)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 6788999988789986555555444443
No 2
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=38.29 E-value=46 Score=23.39 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=20.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q 018597 194 LEEIKQDMQDKAMDPMAVADGQKRMQNLF 222 (353)
Q Consensus 194 l~~i~~k~~~~~~D~~~~~~~~qe~~~Ly 222 (353)
-+++|+.||+...||+-..+.++.++++.
T Consensus 9 kqEvK~E~Ke~EGdP~iK~r~R~~~re~a 37 (54)
T 3bzy_A 9 KDEVKREAKDTDGNPEIKGERRRLHSEIQ 37 (54)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 46888999988789986555555444444
No 3
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.39 E-value=72 Score=21.02 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=21.7
Q ss_pred HhhchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Q 018597 188 TLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEY 225 (353)
Q Consensus 188 ~~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~ 225 (353)
..++.|+++++++ ...|++......|.+++-|+.
T Consensus 3 aalkselqalkke----gfspeelaaleselqalekkl 36 (48)
T 1g6u_A 3 AALKSELQALKKE----GFSPEELAALESELQALEKKL 36 (48)
T ss_dssp HHHHHHHHHHHHT----TCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHH
Confidence 3455667666532 347887777777777777653
No 4
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=29.55 E-value=1.4e+02 Score=25.09 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHH---HHHHHHhCCCC
Q 018597 206 MDPMAVADGQKRM---QNLFKEYGVHP 229 (353)
Q Consensus 206 ~D~~~~~~~~qe~---~~Lykk~gv~P 229 (353)
.||+.+.+..+++ .+|.||||+.+
T Consensus 119 ~DP~rL~~ie~RL~~l~~L~RKyg~~~ 145 (175)
T 4abx_A 119 ADPEALDRVEARLSALSKLKNKYGPTL 145 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCSSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5898776666555 56778999643
No 5
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=24.11 E-value=1.5e+02 Score=25.94 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=30.0
Q ss_pred HHHHHHHHHH-hCCCCccchhh----------hhhhHHHHHHHHHHHHH
Q 018597 215 QKRMQNLFKE-YGVHPLTPLKG----------LFIQGPVFISFFLAISN 252 (353)
Q Consensus 215 ~qe~~~Lykk-~gv~P~~~~l~----------~liQiPIfi~lf~alr~ 252 (353)
++++.+|||| +|.+|=+|++| .=||.-+|+.+|..+.+
T Consensus 37 ~~rl~rLyke~~G~spPkG~lPfS~dWf~tw~~nIhsSlf~~iY~~l~~ 85 (192)
T 2avu_E 37 RGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 85 (192)
T ss_dssp HHHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCcHHHHhCccHhHHHHHHHHHHHHHHh
Confidence 3556789998 67988777765 34788899999999987
No 6
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=22.65 E-value=66 Score=22.67 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=25.7
Q ss_pred HHHHHhhchHHHHHHHHHhcc---cCCHHHHHHHHHHHHHHHHHhC
Q 018597 184 TSKLTLMRPRLEEIKQDMQDK---AMDPMAVADGQKRMQNLFKEYG 226 (353)
Q Consensus 184 ~~Km~~l~Pel~~i~~k~~~~---~~D~~~~~~~~qe~~~Lykk~g 226 (353)
|.++..++-+|+.+...+..+ +-+.+.+...-.|+.++||+|.
T Consensus 3 me~~~~lk~~LK~WE~~F~~~~GRkP~k~DIk~~p~~I~~~YK~Y~ 48 (56)
T 2kmu_A 3 MERLRDVRERLQAWERAFRRQRGRRPSQDDVEAAPEETRALYREYR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHcCHHHHHHHHHHHH
Confidence 567777888888887666532 1123333333334777777763
No 7
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=21.97 E-value=1.1e+02 Score=27.87 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=25.8
Q ss_pred HHHHHHHHhhchHHHHHHHHHhc-ccCCHHHHHHHHHHHH
Q 018597 181 LKSTSKLTLMRPRLEEIKQDMQD-KAMDPMAVADGQKRMQ 219 (353)
Q Consensus 181 ~r~~~Km~~l~Pel~~i~~k~~~-~~~D~~~~~~~~qe~~ 219 (353)
.+...||..+..|.++...+|++ ++.||+..++.+++|.
T Consensus 27 ~~hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~ 66 (239)
T 3k66_A 27 EKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMN 66 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 34556888888888888888876 2237765544444443
No 8
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=19.75 E-value=2.4e+02 Score=24.16 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.8
Q ss_pred cCCHHHHHHHHHHH
Q 018597 205 AMDPMAVADGQKRM 218 (353)
Q Consensus 205 ~~D~~~~~~~~qe~ 218 (353)
+.|++++.+..+|+
T Consensus 109 ~~DeakI~aL~~Ei 122 (175)
T 3lay_A 109 SPDTAKINAVAKEM 122 (175)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 35766554444333
No 9
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=18.08 E-value=81 Score=19.35 Aligned_cols=15 Identities=27% Similarity=0.784 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHhh
Q 018597 157 NWWASIIVTTLLIRT 171 (353)
Q Consensus 157 pW~~aIil~TvivRl 171 (353)
.||++|+..-+..-+
T Consensus 7 ~~wlai~c~LLfs~L 21 (30)
T 1z65_A 7 TWWVAILCMLLASHL 21 (30)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhH
Confidence 699999877665443
No 10
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=17.59 E-value=1.8e+02 Score=22.28 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=22.7
Q ss_pred hchHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 018597 190 MRPRLEEIKQDMQDKAMDPMAVADGQKRMQN 220 (353)
Q Consensus 190 l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~ 220 (353)
+.-++++-.++++....||..+.+.|.++.+
T Consensus 26 ~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~e 56 (85)
T 2ca5_A 26 LQGELTLALDKLAKNPSNPQLLAEYQSKLSE 56 (85)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4456666667777666799998888888764
Done!