Query 018597
Match_columns 353
No_of_seqs 205 out of 1170
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 03:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018597.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018597hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 43.1 25 0.0018 27.9 6.5 39 215-253 33-82 (156)
2 d2ca5a1 a.2.20.1 (A:20-78) Mxi 16.9 1.1E+02 0.008 20.0 4.7 32 189-220 6-37 (59)
3 d2g0ua1 a.2.20.1 (A:1-84) BsaL 14.6 1.1E+02 0.0079 21.6 4.5 32 190-221 32-63 (84)
4 d2gtvx1 a.130.1.3 (X:1-93) Cho 13.0 2.1E+02 0.015 19.7 6.2 40 190-229 37-76 (93)
5 d1okca_ f.42.1.1 (A:) ADP,ATP 12.0 94 0.0068 25.2 4.3 35 215-250 253-288 (292)
6 d2cbia1 a.246.1.1 (A:496-624) 11.5 1.4E+02 0.01 22.3 4.8 17 189-205 5-21 (129)
7 d2b7ea1 a.159.2.1 (A:4-59) Pre 10.7 91 0.0066 20.3 2.9 20 214-233 2-21 (56)
8 d1qh8b_ c.92.2.3 (B:) Nitrogen 10.4 79 0.0058 29.3 3.5 29 207-235 34-70 (519)
9 d1wota_ d.218.1.5 (A:) Unnamed 10.4 1.1E+02 0.0082 21.4 3.7 25 206-230 4-28 (98)
10 d1ecma_ a.130.1.1 (A:) Chorism 9.5 2.5E+02 0.019 18.8 5.4 40 190-229 27-66 (91)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=43.14 E-value=25 Score=27.94 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHHHHH-hCCCCccchhh----------hhhhHHHHHHHHHHHHHh
Q 018597 215 QKRMQNLFKE-YGVHPLTPLKG----------LFIQGPVFISFFLAISNM 253 (353)
Q Consensus 215 ~qe~~~Lykk-~gv~P~~~~l~----------~liQiPIfi~lf~alr~m 253 (353)
..++.+|||| +|.+|-+|++| .-|+.-+|+.+|.-+.+.
T Consensus 33 ~~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~~ 82 (156)
T d2avue1 33 RGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKT 82 (156)
T ss_dssp HHHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHhc
Confidence 4567889988 89999888765 347778888888777653
No 2
>d2ca5a1 a.2.20.1 (A:20-78) MxiH needle protein {Shigella flexneri [TaxId: 623]}
Probab=16.95 E-value=1.1e+02 Score=20.01 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=22.9
Q ss_pred hhchHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 018597 189 LMRPRLEEIKQDMQDKAMDPMAVADGQKRMQN 220 (353)
Q Consensus 189 ~l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~ 220 (353)
.++-+++.-.++++.+..||..+.+.|.++.+
T Consensus 6 ~l~~~l~~Al~~L~~~pSdp~~LA~YQ~klsE 37 (59)
T d2ca5a1 6 TLQGELTLALDKLAKNPSNPQLLAEYQSKLSE 37 (59)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34556666667777666799988888887764
No 3
>d2g0ua1 a.2.20.1 (A:1-84) BsaL needle protein {Burkholderia pseudomallei [TaxId: 28450]}
Probab=14.62 E-value=1.1e+02 Score=21.57 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=23.9
Q ss_pred hchHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q 018597 190 MRPRLEEIKQDMQDKAMDPMAVADGQKRMQNL 221 (353)
Q Consensus 190 l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~L 221 (353)
+.-++++-.+.+++...||..+.+.|.++.|.
T Consensus 32 ~~~~v~~Al~aL~~~psdPa~LA~yQ~~lsey 63 (84)
T d2g0ua1 32 LNKQLQDAQANLTKNPSDPTALANYQMIMSEY 63 (84)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 44566777777777778999998888887653
No 4
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246 {Methanococcus jannaschii [TaxId: 2190]}
Probab=13.02 E-value=2.1e+02 Score=19.73 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=25.4
Q ss_pred hchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCC
Q 018597 190 MRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHP 229 (353)
Q Consensus 190 l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P 229 (353)
+-.++.++|.+.+..-.||+.-.+.-+...+..+++|++|
T Consensus 37 l~~~I~~~K~~~~~pi~d~~RE~~vl~~~~~~a~~~~l~~ 76 (93)
T d2gtvx1 37 LAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDE 76 (93)
T ss_dssp HHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhCCcCH
Confidence 3445555555554444577765555566677778889888
No 5
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=12.03 E-value=94 Score=25.24 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCC-ccchhhhhhhHHHHHHHHHHH
Q 018597 215 QKRMQNLFKEYGVHP-LTPLKGLFIQGPVFISFFLAI 250 (353)
Q Consensus 215 ~qe~~~Lykk~gv~P-~~~~l~~liQiPIfi~lf~al 250 (353)
-+-.++++||+|+.- ++|+.+-+++. +.-++.+.+
T Consensus 253 ~~~~~~i~~~eG~~~lyrG~~~~~~r~-i~~~i~~~~ 288 (292)
T d1okca_ 253 VDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVL 288 (292)
T ss_dssp HHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcccccHHHHHHHH-HHHHhhhhH
Confidence 344678999999876 57888776664 333444444
No 6
>d2cbia1 a.246.1.1 (A:496-624) Hyaluronidase, post-catalytic domain 3 {Clostridium perfringens [TaxId: 1502]}
Probab=11.47 E-value=1.4e+02 Score=22.34 Aligned_cols=17 Identities=18% Similarity=0.472 Sum_probs=13.8
Q ss_pred hhchHHHHHHHHHhccc
Q 018597 189 LMRPRLEEIKQDMQDKA 205 (353)
Q Consensus 189 ~l~Pel~~i~~k~~~~~ 205 (353)
+++|+++++++|+.+..
T Consensus 5 EL~~~l~~f~~kl~~G~ 21 (129)
T d2cbia1 5 ELRAKMDELWNKLSSKE 21 (129)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 57899999999997643
No 7
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.67 E-value=91 Score=20.26 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCCCccch
Q 018597 214 GQKRMQNLFKEYGVHPLTPL 233 (353)
Q Consensus 214 ~~qe~~~Lykk~gv~P~~~~ 233 (353)
+.+..++|.++++|+|....
T Consensus 2 a~~aF~~lL~e~~V~s~wtW 21 (56)
T d2b7ea1 2 AEKEFITMLKENQVDSTWSF 21 (56)
T ss_dssp HHHHHHHHHHHTTCCSSCCH
T ss_pred HHHHHHHHHHHcCCCCCCcH
Confidence 45678899999999998764
No 8
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Klebsiella pneumoniae [TaxId: 573]}
Probab=10.45 E-value=79 Score=29.32 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHH-HHHHHhC-------CCCccchhh
Q 018597 207 DPMAVADGQKRMQ-NLFKEYG-------VHPLTPLKG 235 (353)
Q Consensus 207 D~~~~~~~~qe~~-~Lykk~g-------v~P~~~~l~ 235 (353)
+.++.++.++-.+ .-|+|.| |||.+.|-|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~n~~~~~l~vnP~k~Cqp 70 (519)
T d1qh8b_ 34 DAQRVQEVFAWTTTAEYEALNFRREALTVDPAKACQP 70 (519)
T ss_dssp CHHHHHHHHHHHTSHHHHHHHTTCSSCEESCSCCCHH
T ss_pred CHHHHHHHHHHhcchhhhhhcccccCcccCccccchH
Confidence 4555544443332 4666655 789999965
No 9
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=10.39 E-value=1.1e+02 Score=21.38 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCc
Q 018597 206 MDPMAVADGQKRMQNLFKEYGVHPL 230 (353)
Q Consensus 206 ~D~~~~~~~~qe~~~Lykk~gv~P~ 230 (353)
+|-+..++.+++..++.++||+.-.
T Consensus 4 m~~e~l~~~~~~i~~i~~k~~v~~v 28 (98)
T d1wota_ 4 MDLETLRARREAVLSLCARHGAVRV 28 (98)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 5666777778888999999998753
No 10
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=9.50 E-value=2.5e+02 Score=18.83 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=24.1
Q ss_pred hchHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCC
Q 018597 190 MRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHP 229 (353)
Q Consensus 190 l~Pel~~i~~k~~~~~~D~~~~~~~~qe~~~Lykk~gv~P 229 (353)
+..++.++|++.+..-.||+.-.+.-+...+.-++.|++|
T Consensus 27 l~~~I~~~K~~~~~~i~d~~RE~~il~~~~~~~~~~~l~~ 66 (91)
T d1ecma_ 27 LAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDA 66 (91)
T ss_dssp HHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHhhcCCcCH
Confidence 3445555555544434577765555556666677778776
Done!