BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018602
(353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21
PE=2 SV=1
Length = 435
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 127/212 (59%), Gaps = 11/212 (5%)
Query: 123 IPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAA 182
+P+ EV EI+ K+++A + D ++ KIKK ESE+N++C+ + VL
Sbjct: 114 VPLMPCEVYEISRKLSSATRRGDYEKCGVIIEKIKKLGDESEKNRKCVNENSVGWVLCDC 173
Query: 183 FESFSKTCLDEHVS-VLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRR 241
F+ FS DE ++ +L EILS LT +FP+ E ++ L SA+S C+ LKS D S R+
Sbjct: 174 FDKFSG---DEKLTFMLNEILSLLTWMFPIGLEGISKLASATSFRCVAGLLKSTDDSVRQ 230
Query: 242 NTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAA 301
N +++E++S D RV+ F G E+L LI++ + ++T++S + +Y M+
Sbjct: 231 NAAFIMKEILSLDETRVHSFAVENGVAEALVKLIRDSVSSSSTKSSLIAIYQMVLQ---- 286
Query: 302 DKP--IQKFVDMGLVSLLLETLVDAQRSLCEK 331
KP +F+++GLVS+ +E +VDA+ S+CEK
Sbjct: 287 -KPEIASEFLEIGLVSITVEMIVDAENSVCEK 317
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 124/211 (58%), Gaps = 16/211 (7%)
Query: 123 IPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAA 182
+P++S +V EI +++AA + D ++V K+ + KESERN++C+ + GA VL
Sbjct: 116 VPVTSHQVSEICERLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENGAGLVLCVC 175
Query: 183 FESFSKTCLDEHVS-VLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRR 241
F++FS+ + + S +LEE +S LT + P+ E + L + SS + +V L++GD +
Sbjct: 176 FDAFSE---NANASLLLEETVSVLTWMLPIGLEGQSKLTTTSSFNRLVELLRNGD----Q 228
Query: 242 NTVLVLREVISSDHRRVNMFLEIEGAIES-LYTLIKEPICPTATEASFVVVYHMITSASA 300
N +++E++ + V+ +I G E+ + ++ ++ C S + ++HMI +
Sbjct: 229 NAAFLIKELLELNVTHVHALTKINGVQEAFMKSINRDSTCVN----SLISIHHMILT--- 281
Query: 301 ADKPIQKFVDMGLVSLLLETLVDAQRSLCEK 331
+ + +F+++ LV++ +E LVD++ S+CEK
Sbjct: 282 NQETVSRFLELDLVNITVEMLVDSENSVCEK 312
>sp|C1FXW9|THOC2_DASNO THO complex subunit 2 OS=Dasypus novemcinctus GN=THOC2 PE=3 SV=1
Length = 1613
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 63 VALRLFQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYAKL 121
V+ + +ER + E L + +IK ++Q K VK+ T L Y+Q KFNL RE++EGYAKL
Sbjct: 118 VSDTVLKERLDPETLESLGLIK-QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKL 175
>sp|B2KI97|THOC2_RHIFE THO complex subunit 2 OS=Rhinolophus ferrumequinum GN=THOC2 PE=3
SV=1
Length = 1576
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 63 VALRLFQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYAKL 121
V+ + +ER + E L + +IK ++Q K VK+ T L Y+Q KFNL RE++EGYAKL
Sbjct: 118 VSDTVLKERLDPETLESLGLIK-QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKL 175
>sp|B1AZI6|THOC2_MOUSE THO complex subunit 2 OS=Mus musculus GN=Thoc2 PE=3 SV=1
Length = 1594
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 63 VALRLFQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYAKL 121
V+ + +ER + E L + +IK ++Q K VK+ T L Y+Q KFNL RE++EGYAKL
Sbjct: 118 VSDTVLKERLDPETLESLGLIK-QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKL 175
>sp|Q8NI27|THOC2_HUMAN THO complex subunit 2 OS=Homo sapiens GN=THOC2 PE=1 SV=2
Length = 1593
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 63 VALRLFQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYAKL 121
V+ + +ER + E L + +IK ++Q K VK+ T L Y+Q KFNL RE++EGYAKL
Sbjct: 118 VSDTVLKERLDPETLESLGLIK-QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKL 175
>sp|B1MTK1|THOC2_CALMO THO complex subunit 2 OS=Callicebus moloch GN=THOC2 PE=3 SV=1
Length = 1600
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 63 VALRLFQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYAKL 121
V+ + +ER + E L + +IK ++Q K VK+ T L Y+Q KFNL RE++EGYAKL
Sbjct: 118 VSDTVLKERLDPETLESLGLIK-QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKL 175
>sp|B0KWH8|THOC2_CALJA THO complex subunit 2 OS=Callithrix jacchus GN=THOC2 PE=3 SV=1
Length = 1600
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 63 VALRLFQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYAKL 121
V+ + +ER + E L + +IK ++Q K VK+ T L Y+Q KFNL RE++EGYAKL
Sbjct: 118 VSDTVLKERLDPETLESLGLIK-QSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKL 175
>sp|Q09779|THO2_SCHPO THO complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=tho2 PE=1 SV=3
Length = 1628
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 90 LKGKEVKVNTSLLYQQTKFNLQREKSEGYAKLGI 123
L K V+ NTSLLY+Q KFNL RE+SEG++ L I
Sbjct: 150 LNRKIVRTNTSLLYRQKKFNLLREESEGFSHLMI 183
>sp|Q5RD03|ARMC6_PONAB Armadillo repeat-containing protein 6 OS=Pongo abelii GN=ARMC6 PE=2
SV=1
Length = 501
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 165 RNKRC--IVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAG-----EALT 217
RN+ C +VD G +S+L + + + + SV E + L++L +AG +A+
Sbjct: 306 RNEFCQEVVDLGGLSILVSLLADCNDHQMGDQSSVQELVKQVLSILRAIAGNDDVKDAIV 365
Query: 218 YLGSASSM-HCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK 276
G S+ M L S + + L + D+ R+ +E GA+ +L +
Sbjct: 366 RAGGTESIVAAMTQHLTSPQVCEQSCAALCFLALRKPDNSRI--IVEGGGAVAALQAMKA 423
Query: 277 EPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLE 319
P + + +++ +++ + A KPI +D+G +L+++
Sbjct: 424 HPQKAGVQKQACMLIRNLVAHSQAFSKPI---LDLGAEALIMQ 463
>sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=Homo sapiens GN=ARMC6 PE=1
SV=2
Length = 501
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 165 RNKRC--IVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAG-----EALT 217
RN+ C +VD G +S+L + + + + V E + L+ L +AG +A+
Sbjct: 306 RNEFCQEVVDLGGLSILVSLLADCNDHQMRDQSGVQELVKQVLSTLRAIAGNDDVKDAIV 365
Query: 218 YLGSASSM-HCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK 276
G S+ M L S + + L + D+ R+ +E GA+ +L +
Sbjct: 366 RAGGTESIVAAMTQHLTSPQVCEQSCAALCFLALRKPDNSRI--IVEGGGAVAALQAMKA 423
Query: 277 EPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLE 319
P + + +++ +++ A KPI +D+G +L+++
Sbjct: 424 HPQKAGVQKQACMLIRNLVAHGQAFSKPI---LDLGAEALIMQ 463
>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2
Length = 527
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 20/167 (11%)
Query: 166 NKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTY----LGS 221
N + ++DYG+V + S S ++ V L I AG++ Y LG
Sbjct: 151 NTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNI----------AGDSPKYRDLVLGH 200
Query: 222 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICP 281
+ + + F + LS RN L + +F + + A+ +L LI
Sbjct: 201 GALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQP--LFEQTKAALPTLGRLIHSNDEE 258
Query: 282 TATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSL 328
T+A + + Y S DK IQ ++ G+ S L+E L+ + S+
Sbjct: 259 VLTDACWALSY---LSDGTNDK-IQAVIEAGVCSRLVELLLHSSPSV 301
>sp|Q16659|MK06_HUMAN Mitogen-activated protein kinase 6 OS=Homo sapiens GN=MAPK6 PE=1
SV=1
Length = 721
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 50 LINLAKWLVESAWVALRLFQERCEEELLWAAEM-IKIKAQDLKGKEVKVN-----TSLLY 103
+I+L+ W +S + + + +CE L A++ ++ +Q L GKE + N S +
Sbjct: 473 IIDLSNWKEQSKEKSDKKGKSKCERNGLVKAQIALEEASQQLAGKEREKNQGFDFDSFIA 532
Query: 104 QQTKFNLQREKSEGYAKLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKES 163
+ + Q E ++ KL SSV LE+ S I+ + E Q G +A+++ + S
Sbjct: 533 GTIQLSSQHEPTDVVDKLNDLNSSVSQLELKSLISKSVSQEKQEKGMANLAQLEALYQSS 592
>sp|Q5R7U1|MK06_PONAB Mitogen-activated protein kinase 6 OS=Pongo abelii GN=MAPK6 PE=2
SV=1
Length = 721
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 50 LINLAKWLVESAWVALRLFQERCEEELLWAAEM-IKIKAQDLKGKEVKVN-----TSLLY 103
+I+L+ W +S + + + +CE L A++ ++ +Q L GKE + N S +
Sbjct: 473 IIDLSNWKEQSKEKSDKKGKSKCERNGLVKAQIALEEASQQLAGKEREKNQGFDFDSFIA 532
Query: 104 QQTKFNLQREKSEGYAKLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKES 163
+ + Q E ++ KL SSV LE+ S I+ + E Q G +A+++ + S
Sbjct: 533 GTIQLSSQHEPTDVVDKLNDLNSSVSQLELKSLISKSVSQEKQEKGMANLAQLEALYQSS 592
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,787,862
Number of Sequences: 539616
Number of extensions: 4282298
Number of successful extensions: 10637
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10615
Number of HSP's gapped (non-prelim): 32
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)