Query 018602
Match_columns 353
No_of_seqs 227 out of 659
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:28:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.9 2.8E-21 6.1E-26 219.0 19.6 214 127-351 1145-1403(2102)
2 PLN03200 cellulose synthase-in 99.8 4.1E-19 9E-24 201.6 20.9 210 126-349 11-232 (2102)
3 KOG4224 Armadillo repeat prote 99.4 3.5E-12 7.5E-17 123.8 13.5 189 144-348 179-376 (550)
4 PF04564 U-box: U-box domain; 99.4 9.1E-14 2E-18 107.2 0.1 64 42-108 1-69 (73)
5 KOG4224 Armadillo repeat prote 99.3 4.3E-11 9.3E-16 116.3 14.8 192 143-348 219-417 (550)
6 PF05804 KAP: Kinesin-associat 99.3 1.5E-10 3.3E-15 122.9 19.2 177 152-346 269-451 (708)
7 PF05804 KAP: Kinesin-associat 99.1 3.1E-09 6.7E-14 113.0 17.0 163 144-323 302-464 (708)
8 smart00504 Ubox Modified RING 98.9 2.8E-10 6.2E-15 84.3 0.2 58 49-106 2-63 (63)
9 PF04826 Arm_2: Armadillo-like 98.9 1.1E-07 2.4E-12 90.2 17.5 186 125-333 9-197 (254)
10 cd00020 ARM Armadillo/beta-cat 98.8 6.6E-08 1.4E-12 78.5 12.8 118 170-296 3-120 (120)
11 KOG0166 Karyopherin (importin) 98.8 3.8E-07 8.3E-12 93.3 18.2 187 130-333 111-300 (514)
12 KOG0166 Karyopherin (importin) 98.8 3.4E-07 7.5E-12 93.6 17.2 216 101-333 212-428 (514)
13 cd00020 ARM Armadillo/beta-cat 98.7 1.2E-07 2.6E-12 77.0 10.9 109 220-333 4-112 (120)
14 COG5064 SRP1 Karyopherin (impo 98.4 1.6E-05 3.5E-10 77.5 16.7 189 129-333 72-264 (526)
15 PF10508 Proteasom_PSMB: Prote 98.4 2.4E-05 5.1E-10 81.1 19.2 175 132-324 81-255 (503)
16 KOG1048 Neural adherens juncti 98.3 9.1E-06 2E-10 85.9 13.8 176 130-322 235-427 (717)
17 KOG4199 Uncharacterized conser 98.2 7.3E-05 1.6E-09 72.9 16.7 174 148-333 163-351 (461)
18 PF04826 Arm_2: Armadillo-like 98.2 3.8E-05 8.1E-10 72.9 14.5 159 171-346 9-174 (254)
19 KOG0946 ER-Golgi vesicle-tethe 98.0 0.00032 7E-09 74.5 18.3 199 118-333 12-233 (970)
20 COG5064 SRP1 Karyopherin (impo 98.0 0.00015 3.2E-09 70.9 13.6 180 144-333 255-435 (526)
21 KOG1222 Kinesin associated pro 97.9 0.00022 4.7E-09 72.4 13.9 195 120-333 252-446 (791)
22 KOG1222 Kinesin associated pro 97.9 0.0001 2.3E-09 74.6 11.1 136 197-342 279-418 (791)
23 KOG2122 Beta-catenin-binding p 97.9 0.00025 5.3E-09 79.3 14.3 191 150-347 316-529 (2195)
24 KOG4199 Uncharacterized conser 97.4 0.0029 6.3E-08 62.0 13.6 139 150-297 305-446 (461)
25 PF10508 Proteasom_PSMB: Prote 97.4 0.0074 1.6E-07 62.7 17.5 162 173-347 76-242 (503)
26 KOG4500 Rho/Rac GTPase guanine 97.4 0.0075 1.6E-07 60.8 15.9 178 150-333 241-423 (604)
27 KOG2122 Beta-catenin-binding p 97.2 0.0015 3.3E-08 73.3 10.2 193 151-350 365-574 (2195)
28 KOG4500 Rho/Rac GTPase guanine 97.1 0.015 3.2E-07 58.8 14.4 184 144-333 327-511 (604)
29 PF03224 V-ATPase_H_N: V-ATPas 97.0 0.016 3.5E-07 56.3 14.0 170 144-322 117-293 (312)
30 PF00514 Arm: Armadillo/beta-c 96.9 0.0017 3.7E-08 43.8 4.1 39 163-208 1-39 (41)
31 KOG1048 Neural adherens juncti 96.8 0.0089 1.9E-07 63.8 11.1 151 195-351 247-419 (717)
32 KOG2160 Armadillo/beta-catenin 96.8 0.079 1.7E-06 52.2 16.7 178 143-333 94-274 (342)
33 PF11789 zf-Nse: Zinc-finger o 96.7 0.00018 3.8E-09 52.9 -2.2 49 39-87 2-55 (57)
34 KOG0289 mRNA splicing factor [ 96.6 0.004 8.7E-08 62.4 5.8 104 49-172 1-131 (506)
35 KOG0168 Putative ubiquitin fus 96.5 0.045 9.6E-07 59.2 13.3 189 127-333 166-356 (1051)
36 PF13646 HEAT_2: HEAT repeats; 96.5 0.016 3.5E-07 44.6 7.8 87 176-291 1-87 (88)
37 PF00514 Arm: Armadillo/beta-c 96.5 0.0043 9.4E-08 41.8 4.0 39 213-251 2-40 (41)
38 PF03224 V-ATPase_H_N: V-ATPas 96.4 0.027 5.8E-07 54.8 10.3 186 152-348 30-239 (312)
39 PF05536 Neurochondrin: Neuroc 96.3 0.086 1.9E-06 55.4 14.1 143 147-298 20-170 (543)
40 PF14664 RICTOR_N: Rapamycin-i 95.9 0.18 3.8E-06 50.6 13.6 173 154-344 5-184 (371)
41 KOG2160 Armadillo/beta-catenin 95.5 0.27 5.8E-06 48.6 13.0 134 195-333 97-232 (342)
42 KOG0946 ER-Golgi vesicle-tethe 95.5 0.14 3.1E-06 55.1 11.5 141 171-322 119-264 (970)
43 KOG4642 Chaperone-dependent E3 95.0 0.021 4.6E-07 53.7 3.4 68 38-108 204-276 (284)
44 PF12348 CLASP_N: CLASP N term 95.0 0.18 3.9E-06 46.2 9.5 164 143-327 18-192 (228)
45 smart00185 ARM Armadillo/beta- 94.9 0.058 1.3E-06 35.4 4.4 38 256-295 3-40 (41)
46 smart00185 ARM Armadillo/beta- 94.8 0.052 1.1E-06 35.6 4.1 38 214-251 3-40 (41)
47 PF05536 Neurochondrin: Neuroc 94.7 0.35 7.7E-06 50.9 11.8 98 226-333 53-160 (543)
48 KOG4646 Uncharacterized conser 94.5 0.77 1.7E-05 40.0 11.4 112 128-251 16-127 (173)
49 KOG3036 Protein involved in ce 94.5 1.8 4E-05 41.1 14.7 147 148-298 95-249 (293)
50 PRK09687 putative lyase; Provi 94.4 0.6 1.3E-05 44.9 12.0 78 223-325 159-236 (280)
51 KOG4646 Uncharacterized conser 94.1 0.24 5.2E-06 43.1 7.5 101 194-298 30-130 (173)
52 PRK09687 putative lyase; Provi 93.6 1.1 2.4E-05 43.0 12.0 83 221-332 190-273 (280)
53 PF04078 Rcd1: Cell differenti 93.3 3.2 7E-05 39.6 14.3 154 148-309 66-227 (262)
54 PF10165 Ric8: Guanine nucleot 93.1 0.89 1.9E-05 46.7 11.0 125 193-322 44-190 (446)
55 cd00256 VATPase_H VATPase_H, r 92.9 3.2 7E-05 42.5 14.7 123 196-321 159-286 (429)
56 KOG1874 KEKE-like motif-contai 92.8 0.13 2.9E-06 57.5 4.9 53 59-119 21-73 (1477)
57 KOG0168 Putative ubiquitin fus 92.8 0.25 5.4E-06 53.7 6.7 94 236-333 181-276 (1051)
58 KOG3678 SARM protein (with ste 92.5 0.53 1.1E-05 48.4 8.2 122 219-347 176-306 (832)
59 KOG1293 Proteins containing ar 92.2 2.3 4.9E-05 45.3 12.6 137 151-296 396-533 (678)
60 KOG2042 Ubiquitin fusion degra 91.1 0.1 2.2E-06 57.5 1.6 65 41-108 866-935 (943)
61 cd00256 VATPase_H VATPase_H, r 90.9 6.8 0.00015 40.1 14.4 139 174-323 53-196 (429)
62 KOG1789 Endocytosis protein RM 90.5 4.1 8.9E-05 45.9 12.8 135 151-295 1744-1882(2235)
63 COG5096 Vesicle coat complex, 90.4 4.7 0.0001 44.1 13.2 93 192-296 103-195 (757)
64 PRK13800 putative oxidoreducta 90.1 5.1 0.00011 44.7 13.8 118 158-294 692-834 (897)
65 PTZ00429 beta-adaptin; Provisi 90.0 13 0.00028 40.8 16.4 93 193-297 117-209 (746)
66 PF13646 HEAT_2: HEAT repeats; 89.8 1.2 2.5E-05 34.0 6.2 73 225-324 1-74 (88)
67 KOG2171 Karyopherin (importin) 88.7 7.8 0.00017 43.7 13.5 186 145-348 361-560 (1075)
68 COG5113 UFD2 Ubiquitin fusion 88.6 0.28 6.1E-06 51.7 2.4 65 40-107 849-918 (929)
69 PF01602 Adaptin_N: Adaptin N 88.2 6.9 0.00015 40.0 12.4 186 76-298 34-223 (526)
70 PF12031 DUF3518: Domain of un 87.8 1.6 3.4E-05 41.3 6.6 82 196-278 139-228 (257)
71 PRK13800 putative oxidoreducta 87.4 13 0.00029 41.5 14.7 28 174-208 652-679 (897)
72 PF09759 Atx10homo_assoc: Spin 87.2 2.4 5.1E-05 34.9 6.5 66 150-220 4-69 (102)
73 KOG2973 Uncharacterized conser 86.2 4.7 0.0001 39.6 8.9 110 225-344 5-119 (353)
74 PF12348 CLASP_N: CLASP N term 85.9 13 0.00028 33.8 11.6 108 175-296 95-206 (228)
75 KOG1293 Proteins containing ar 85.9 7 0.00015 41.7 10.7 120 219-345 415-543 (678)
76 KOG1789 Endocytosis protein RM 85.6 7.7 0.00017 43.9 11.1 117 198-322 1742-1863(2235)
77 PF13513 HEAT_EZ: HEAT-like re 85.6 3.3 7.2E-05 29.1 5.9 53 238-294 2-55 (55)
78 KOG1242 Protein containing ada 85.2 12 0.00025 39.7 11.9 130 174-324 213-345 (569)
79 PF01602 Adaptin_N: Adaptin N 83.9 10 0.00022 38.8 11.0 153 144-323 126-278 (526)
80 PF14664 RICTOR_N: Rapamycin-i 83.7 21 0.00045 35.9 12.7 157 150-324 43-200 (371)
81 PF06371 Drf_GBD: Diaphanous G 82.9 6.9 0.00015 34.4 8.1 117 129-251 67-186 (187)
82 TIGR00599 rad18 DNA repair pro 80.6 1.3 2.8E-05 44.8 2.9 61 47-107 25-89 (397)
83 PF11841 DUF3361: Domain of un 79.9 31 0.00066 30.7 10.9 119 221-345 9-142 (160)
84 KOG2734 Uncharacterized conser 79.2 54 0.0012 33.9 13.6 188 151-350 103-320 (536)
85 PF11698 V-ATPase_H_C: V-ATPas 78.6 10 0.00022 32.0 7.2 86 104-208 28-113 (119)
86 KOG4413 26S proteasome regulat 77.1 62 0.0013 32.4 13.0 163 151-327 101-270 (524)
87 cd03569 VHS_Hrs_Vps27p VHS dom 76.7 18 0.0004 31.2 8.5 73 223-296 41-114 (142)
88 KOG2734 Uncharacterized conser 76.5 35 0.00075 35.3 11.4 179 149-333 142-341 (536)
89 PF11841 DUF3361: Domain of un 76.3 15 0.00032 32.7 7.8 79 171-254 55-133 (160)
90 cd03561 VHS VHS domain family; 76.0 21 0.00046 30.2 8.7 73 223-296 37-112 (133)
91 KOG1241 Karyopherin (importin) 75.6 35 0.00076 37.4 11.7 148 166-324 309-461 (859)
92 PF08045 CDC14: Cell division 75.4 25 0.00054 33.7 9.7 81 240-324 108-188 (257)
93 PF08167 RIX1: rRNA processing 74.5 17 0.00036 32.1 7.9 73 224-297 26-98 (165)
94 PF12755 Vac14_Fab1_bd: Vacuol 74.5 23 0.0005 28.6 8.0 68 223-294 27-94 (97)
95 PF02985 HEAT: HEAT repeat; I 73.9 6.2 0.00014 24.6 3.6 29 267-296 1-29 (31)
96 KOG2973 Uncharacterized conser 73.6 99 0.0021 30.6 13.6 185 151-350 61-287 (353)
97 PF13513 HEAT_EZ: HEAT-like re 72.7 7.4 0.00016 27.2 4.2 53 196-250 2-55 (55)
98 cd03568 VHS_STAM VHS domain fa 71.5 30 0.00066 29.9 8.6 73 223-296 37-110 (144)
99 PF10165 Ric8: Guanine nucleot 71.4 16 0.00036 37.5 8.0 99 246-349 4-122 (446)
100 PF11701 UNC45-central: Myosin 71.0 12 0.00025 32.8 6.0 102 226-333 46-151 (157)
101 TIGR02270 conserved hypothetic 70.4 67 0.0015 32.7 12.1 51 176-244 88-138 (410)
102 PF08045 CDC14: Cell division 70.0 26 0.00056 33.5 8.4 83 149-237 108-190 (257)
103 PF04821 TIMELESS: Timeless pr 69.7 35 0.00077 32.5 9.4 154 147-324 9-190 (266)
104 TIGR02270 conserved hypothetic 68.8 77 0.0017 32.3 12.1 42 223-276 178-219 (410)
105 COG5209 RCD1 Uncharacterized p 68.5 42 0.00092 31.8 9.2 147 148-298 116-270 (315)
106 KOG2611 Neurochondrin/leucine- 68.4 1E+02 0.0022 32.4 12.6 141 147-294 26-180 (698)
107 COG5096 Vesicle coat complex, 68.3 27 0.00059 38.3 9.1 95 224-333 93-187 (757)
108 KOG2171 Karyopherin (importin) 68.3 27 0.00058 39.6 9.2 97 222-324 347-443 (1075)
109 PF12031 DUF3518: Domain of un 68.2 19 0.00041 34.2 7.0 86 235-325 136-229 (257)
110 PF11701 UNC45-central: Myosin 67.2 66 0.0014 28.0 10.0 91 198-291 60-154 (157)
111 smart00288 VHS Domain present 66.7 44 0.00096 28.3 8.5 73 223-296 37-111 (133)
112 PF13764 E3_UbLigase_R4: E3 ub 65.9 1.4E+02 0.0031 33.2 14.2 165 149-323 138-330 (802)
113 cd03567 VHS_GGA VHS domain fam 64.2 54 0.0012 28.3 8.6 72 223-295 38-115 (139)
114 PF02985 HEAT: HEAT repeat; I 63.8 16 0.00035 22.7 4.0 27 225-251 2-28 (31)
115 KOG1077 Vesicle coat complex A 63.8 1.4E+02 0.0031 32.7 13.1 92 225-330 331-422 (938)
116 PF08324 PUL: PUL domain; Int 63.7 34 0.00074 32.0 8.0 162 147-319 78-251 (268)
117 PF09759 Atx10homo_assoc: Spin 63.5 42 0.0009 27.6 7.3 69 240-312 3-72 (102)
118 PF14668 RICTOR_V: Rapamycin-i 63.4 20 0.00043 27.6 5.2 60 284-347 4-69 (73)
119 COG5240 SEC21 Vesicle coat com 63.3 2.1E+02 0.0045 30.9 13.9 140 95-253 164-333 (898)
120 PTZ00429 beta-adaptin; Provisi 62.1 33 0.00072 37.7 8.4 170 127-333 31-200 (746)
121 KOG0414 Chromosome condensatio 61.6 19 0.00041 41.0 6.5 130 175-327 920-1050(1251)
122 COG5231 VMA13 Vacuolar H+-ATPa 61.1 90 0.002 31.2 10.3 123 197-324 165-291 (432)
123 PF12755 Vac14_Fab1_bd: Vacuol 60.9 45 0.00097 26.9 7.1 55 265-326 26-82 (97)
124 PF04063 DUF383: Domain of unk 60.9 1E+02 0.0022 28.1 10.2 94 223-321 52-153 (192)
125 PLN03208 E3 ubiquitin-protein 60.0 6.2 0.00013 36.1 2.1 53 50-102 20-90 (193)
126 PF12717 Cnd1: non-SMC mitotic 60.0 61 0.0013 28.6 8.5 91 195-297 2-93 (178)
127 PF12717 Cnd1: non-SMC mitotic 59.8 38 0.00081 30.0 7.1 80 237-330 2-81 (178)
128 PF00790 VHS: VHS domain; Int 59.1 50 0.0011 28.1 7.5 71 224-295 43-117 (140)
129 PF05004 IFRD: Interferon-rela 58.6 38 0.00083 33.0 7.5 66 224-292 87-156 (309)
130 PF04063 DUF383: Domain of unk 56.9 1.3E+02 0.0029 27.3 10.2 101 174-276 52-157 (192)
131 KOG0301 Phospholipase A2-activ 56.0 2.6E+02 0.0056 30.5 13.3 165 146-323 558-727 (745)
132 PF05918 API5: Apoptosis inhib 52.6 1E+02 0.0023 32.7 9.9 124 147-293 19-159 (556)
133 KOG4413 26S proteasome regulat 52.3 2.6E+02 0.0057 28.1 14.7 146 196-348 186-345 (524)
134 KOG1967 DNA repair/transcripti 51.3 77 0.0017 35.6 8.8 143 174-332 867-1015(1030)
135 cd03572 ENTH_epsin_related ENT 50.7 1.3E+02 0.0029 25.4 8.5 101 92-210 13-119 (122)
136 KOG0212 Uncharacterized conser 49.0 2.3E+02 0.0049 30.4 11.4 144 145-298 263-408 (675)
137 COG1413 FOG: HEAT repeat [Ener 48.1 2.2E+02 0.0048 27.2 11.0 36 260-297 175-210 (335)
138 PF14500 MMS19_N: Dos2-interac 47.2 2.2E+02 0.0048 27.1 10.5 135 145-295 12-152 (262)
139 KOG2229 Protein required for a 44.9 1.4E+02 0.0031 31.5 9.1 109 174-295 16-128 (616)
140 PF11698 V-ATPase_H_C: V-ATPas 44.4 95 0.0021 26.2 6.6 72 223-296 43-115 (119)
141 KOG1060 Vesicle coat complex A 43.8 2.1E+02 0.0045 31.9 10.5 224 41-294 172-456 (968)
142 COG1413 FOG: HEAT repeat [Ener 43.7 2E+02 0.0044 27.5 10.0 27 223-249 105-132 (335)
143 PF08167 RIX1: rRNA processing 42.1 2.4E+02 0.0051 24.7 9.6 115 126-250 19-141 (165)
144 PF05918 API5: Apoptosis inhib 40.1 87 0.0019 33.3 7.0 85 234-333 33-120 (556)
145 PF08389 Xpo1: Exportin 1-like 40.0 2.1E+02 0.0045 23.4 8.6 96 222-323 25-137 (148)
146 PF04641 Rtf2: Rtf2 RING-finge 39.9 11 0.00024 35.8 0.4 49 48-97 113-167 (260)
147 KOG1059 Vesicle coat complex A 39.6 5.7E+02 0.012 28.4 13.7 60 144-214 193-252 (877)
148 PF10363 DUF2435: Protein of u 39.0 1.2E+02 0.0027 24.1 6.3 70 225-298 5-74 (92)
149 COG5215 KAP95 Karyopherin (imp 38.6 1.1E+02 0.0024 32.9 7.3 115 174-296 321-437 (858)
150 KOG1077 Vesicle coat complex A 38.6 5.5E+02 0.012 28.5 12.5 45 225-277 370-415 (938)
151 KOG2023 Nuclear transport rece 36.6 2.4E+02 0.0053 30.9 9.6 113 175-297 129-245 (885)
152 KOG1242 Protein containing ada 36.5 4.7E+02 0.01 28.0 11.7 139 148-295 270-443 (569)
153 KOG1062 Vesicle coat complex A 36.4 1.3E+02 0.0029 33.2 7.8 108 196-322 122-229 (866)
154 KOG3039 Uncharacterized conser 36.0 19 0.00042 34.2 1.3 52 46-97 219-276 (303)
155 PF06025 DUF913: Domain of Unk 35.8 2.1E+02 0.0045 28.8 8.8 98 222-324 105-208 (379)
156 PF07814 WAPL: Wings apart-lik 35.3 2.3E+02 0.005 28.2 9.0 56 127-186 20-75 (361)
157 KOG2979 Protein involved in DN 34.7 20 0.00044 34.1 1.3 61 46-107 174-240 (262)
158 PF05004 IFRD: Interferon-rela 34.3 4.5E+02 0.0096 25.6 10.8 98 225-327 45-144 (309)
159 KOG1062 Vesicle coat complex A 34.2 6.8E+02 0.015 28.0 12.6 143 144-310 246-388 (866)
160 KOG2759 Vacuolar H+-ATPase V1 32.4 4.9E+02 0.011 26.8 10.6 122 198-322 174-300 (442)
161 PF04388 Hamartin: Hamartin pr 32.0 6E+02 0.013 27.7 12.1 71 224-297 71-141 (668)
162 PF08569 Mo25: Mo25-like; Int 31.6 3.4E+02 0.0074 26.9 9.4 135 152-297 143-284 (335)
163 KOG0883 Cyclophilin type, U bo 31.6 16 0.00034 36.9 0.0 47 51-97 43-91 (518)
164 COG5369 Uncharacterized conser 31.5 2.1E+02 0.0046 30.6 8.0 137 152-298 409-548 (743)
165 KOG1061 Vesicle coat complex A 31.4 1.3E+02 0.0028 33.0 6.7 94 193-298 98-191 (734)
166 cd03569 VHS_Hrs_Vps27p VHS dom 31.1 2.4E+02 0.0053 24.2 7.4 72 127-208 40-112 (142)
167 PF12397 U3snoRNP10: U3 small 31.0 2.2E+02 0.0048 23.2 6.9 68 224-298 7-76 (121)
168 PF00790 VHS: VHS domain; Int 29.8 2.4E+02 0.0052 23.9 7.1 73 127-208 41-116 (140)
169 smart00288 VHS Domain present 29.8 2.8E+02 0.006 23.4 7.4 73 127-208 36-109 (133)
170 PF13445 zf-RING_UBOX: RING-ty 29.4 9.6 0.00021 26.2 -1.4 25 51-76 1-30 (43)
171 COG5181 HSH155 U2 snRNP splice 29.0 7.2E+02 0.016 27.3 11.5 60 194-255 659-720 (975)
172 KOG1248 Uncharacterized conser 28.5 1E+03 0.022 27.9 14.1 137 147-297 712-857 (1176)
173 PF06012 DUF908: Domain of Unk 27.8 2.2E+02 0.0047 27.9 7.3 77 197-273 238-323 (329)
174 PF11865 DUF3385: Domain of un 26.8 4.3E+02 0.0093 23.0 9.0 136 176-332 12-148 (160)
175 PF06371 Drf_GBD: Diaphanous G 26.7 2.4E+02 0.0051 24.5 6.7 58 237-296 130-187 (187)
176 cd03567 VHS_GGA VHS domain fam 26.6 3.6E+02 0.0078 23.1 7.6 77 127-208 37-114 (139)
177 PF13764 E3_UbLigase_R4: E3 ub 25.2 83 0.0018 35.0 4.1 64 266-333 117-192 (802)
178 cd03561 VHS VHS domain family; 24.5 4.2E+02 0.0091 22.1 7.8 74 127-208 36-110 (133)
179 PF06012 DUF908: Domain of Unk 24.1 3.3E+02 0.0071 26.7 7.8 62 237-298 236-299 (329)
180 KOG2259 Uncharacterized conser 23.7 52 0.0011 35.6 2.2 66 225-297 375-440 (823)
181 KOG2611 Neurochondrin/leucine- 23.6 3E+02 0.0066 29.1 7.4 75 239-321 79-161 (698)
182 cd03568 VHS_STAM VHS domain fa 23.4 3.9E+02 0.0084 23.0 7.3 72 127-208 36-108 (144)
183 PF12726 SEN1_N: SEN1 N termin 23.3 3.8E+02 0.0082 29.3 8.8 51 203-253 503-554 (727)
184 PF01365 RYDR_ITPR: RIH domain 22.3 4.1E+02 0.0088 23.8 7.6 125 166-298 35-171 (207)
185 KOG0567 HEAT repeat-containing 22.2 1.7E+02 0.0038 28.3 5.1 77 224-326 188-265 (289)
186 KOG1824 TATA-binding protein-i 21.9 1.6E+02 0.0035 33.5 5.4 136 192-337 581-719 (1233)
187 PF08158 NUC130_3NT: NUC130/3N 21.6 1E+02 0.0022 22.1 2.7 33 173-208 14-46 (52)
188 KOG1059 Vesicle coat complex A 21.6 4.6E+02 0.01 29.0 8.6 86 224-324 145-230 (877)
189 KOG3678 SARM protein (with ste 21.4 4.2E+02 0.0091 28.0 8.0 117 150-275 240-360 (832)
190 KOG1058 Vesicle coat complex C 21.2 1.2E+03 0.026 26.2 13.1 51 147-209 221-271 (948)
191 PF14663 RasGEF_N_2: Rapamycin 20.9 2E+02 0.0044 23.7 4.8 40 267-311 9-48 (115)
192 PF12719 Cnd3: Nuclear condens 20.9 4.1E+02 0.0088 25.4 7.6 97 194-297 40-144 (298)
193 KOG1820 Microtubule-associated 20.8 7.4E+02 0.016 27.8 10.3 91 195-296 350-443 (815)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=2.8e-21 Score=219.01 Aligned_cols=214 Identities=14% Similarity=0.081 Sum_probs=172.5
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 206 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~ 206 (353)
+..+..++.-+++... .+..+..|+++|+.+++++++||+||+++|++++|+.+|...... ......++++++|.
T Consensus 1145 ~~~Ip~Lv~lL~~~~~--r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~---s~e~a~~ElL~IL~ 1219 (2102)
T PLN03200 1145 RKAIPLLVDLLKPIPD--RPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQD---STEEAASELLRILF 1219 (2102)
T ss_pred HHHHHHHHHHhccccc--cccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCcc---chhHHHHHHHHHHh
Confidence 3445566666754321 112356799999999999999999999999999999998775321 12445677777654
Q ss_pred hcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHH-------------H-----HhhhhhchH
Q 018602 207 LLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRV-------------N-----MFLEIEGAI 268 (353)
Q Consensus 207 ~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~-------------~-----~IG~~~gai 268 (353)
.+++.+..+.+++++++|+++|++|+..+|.+|+.+|++|... ++++ . ..+..++++
T Consensus 1220 ----~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~-~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~ 1294 (2102)
T PLN03200 1220 ----SSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSA-EHIRDSELARQAVQPLVEMLNTGSESEQHAAI 1294 (2102)
T ss_pred ----CCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh-hhhhhhhhhhccchHHHHHhcccchhhhHHHH
Confidence 3567788888888999999999999999999999999999855 4432 2 334456788
Q ss_pred HHHHHhhcCCCChhHHH-----HHHHH----------------HHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhcccc
Q 018602 269 ESLYTLIKEPICPTATE-----ASFVV----------------VYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRS 327 (353)
Q Consensus 269 ~~LV~lL~~~~s~~a~k-----~Al~a----------------L~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~ 327 (353)
.+|++++++..++++.+ .++.+ +++||.+.-++++||.+++++|+|++|+++|.+ +++
T Consensus 1295 ~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~d-e~~ 1373 (2102)
T PLN03200 1295 GALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVS-ESS 1373 (2102)
T ss_pred HHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhc-cCc
Confidence 88888999888999999 99999 999997532346899999999999999999998 666
Q ss_pred c-hhhhh-----ccCCHHHHHHHhccCCcc
Q 018602 328 L-CEKPW-----VFSTDFAAVITGEERPTI 351 (353)
Q Consensus 328 ~-~E~aL-----L~~~~eGR~ai~~~~~~i 351 (353)
. +|+++ ||.|++||+++..|++++
T Consensus 1374 ~~~E~Al~vLd~Lc~~eegre~~~~h~a~v 1403 (2102)
T PLN03200 1374 TAQEAGVCALDRLLDDEQLAELVAAHGAVV 1403 (2102)
T ss_pred hHHHHHHHHHHHHhcCHhhHHHHHHcCChh
Confidence 5 99999 999999999999999886
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.82 E-value=4.1e-19 Score=201.64 Aligned_cols=210 Identities=12% Similarity=0.103 Sum_probs=171.9
Q ss_pred ChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHh-cCCHHHHHHHhhcccccccchhHHHHHHHHHH
Q 018602 126 SSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVD-YGAVSVLAAAFESFSKTCLDEHVSVLEEILST 204 (353)
Q Consensus 126 ~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~-aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~ 204 (353)
....+..+++++.+... +++++.+++++|+.++|++++||.++++ +|++|.|+.+|.++ +..++++|+++
T Consensus 11 ~~~~v~~Lve~L~s~~s--s~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg-------~~~vk~nAaaa 81 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSS--SPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG-------TLGAKVNAAAV 81 (2102)
T ss_pred hHHHHHHHHHHHHcccC--CHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC-------CHHHHHHHHHH
Confidence 35688899999976422 3567788999999999999999999997 69999999999765 35789999999
Q ss_pred HHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccc--hHHHHHhhhhhchHHHHHHhhcCCCChh
Q 018602 205 LTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD--HRRVNMFLEIEGAIESLYTLIKEPICPT 282 (353)
Q Consensus 205 L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~--~~~~~~IG~~~gai~~LV~lL~~~~s~~ 282 (353)
|.+| ..++++|..|..+|+|+.|+++|++|+.++|++|+.+|++||... +.++..||...|+++.|+.+++++....
T Consensus 82 L~nL-S~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d 160 (2102)
T PLN03200 82 LGVL-CKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD 160 (2102)
T ss_pred HHHH-hcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhh
Confidence 9998 456889998888999999999999999999999999999999654 5566666666799999999999873211
Q ss_pred --HHHHHHHHHHHhhcCCCCCCchHHHH-HHcCcHHHHHHHhhhccccchhhhh-----cc-CCHHHHHHHhccCC
Q 018602 283 --ATEASFVVVYHMITSASAADKPIQKF-VDMGLVSLLLETLVDAQRSLCEKPW-----VF-STDFAAVITGEERP 349 (353)
Q Consensus 283 --a~k~Al~aL~nLc~~~~~~~~Nr~~~-VeaGaV~~LlelL~~~~~~~~E~aL-----L~-~~~eGR~ai~~~~~ 349 (353)
..+.|..+|+|||.++ .|+.++ +++|+|+.|+++|.+++....+.|. +| .+++++.++.+.++
T Consensus 161 ~~L~~~Av~AL~nLs~~~----en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGa 232 (2102)
T PLN03200 161 KVVEGLLTGALRNLCGST----DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGA 232 (2102)
T ss_pred HHHHHHHHHHHHHHhcCc----cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 2244578999999987 788665 8999999999999876555555555 44 45789999986544
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.5e-12 Score=123.82 Aligned_cols=189 Identities=16% Similarity=0.197 Sum_probs=150.0
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhcc--C
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG--S 221 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~--~ 221 (353)
+|...|..+..-+-.++. +.+||+.++.+|.+|+|++++.++ +..+|+-+-+++.++.. +..++++++ +
T Consensus 179 kdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~-------d~dvqyycttaisnIaV-d~~~Rk~Laqae 249 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSG-------DLDVQYYCTTAISNIAV-DRRARKILAQAE 249 (550)
T ss_pred chhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccC-------ChhHHHHHHHHhhhhhh-hHHHHHHHHhcc
Confidence 455566667777777765 567999999999999999999876 35688888888888743 677888877 4
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCC
Q 018602 222 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAA 301 (353)
Q Consensus 222 ~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~ 301 (353)
|..++.++.++..|+.+.|-.|...|.+|++. .++..-|-.+ |.+|.||++|+++ .-...-+...++.|++.++
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~a-g~lP~lv~Llqs~-~~plilasVaCIrnisihp--- 323 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEA-GSLPLLVELLQSP-MGPLILASVACIRNISIHP--- 323 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhc-CCchHHHHHHhCc-chhHHHHHHHHHhhccccc---
Confidence 67999999999999999999999999999854 5666556577 9999999999877 5567778899999999987
Q ss_pred CchHHHHHHcCcHHHHHHHhhhcccc----chhhhh--ccC-CHHHHHHHhccC
Q 018602 302 DKPIQKFVDMGLVSLLLETLVDAQRS----LCEKPW--VFS-TDFAAVITGEER 348 (353)
Q Consensus 302 ~~Nr~~~VeaGaV~~LlelL~~~~~~----~~E~aL--L~~-~~eGR~ai~~~~ 348 (353)
-|-.-++++|.+.||+.+|.-++.. -+-..| |+. ++--+.+|.+..
T Consensus 324 -lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg 376 (550)
T KOG4224|consen 324 -LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG 376 (550)
T ss_pred -CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC
Confidence 7999999999999999999754332 223333 766 444566655443
No 4
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.36 E-value=9.1e-14 Score=107.16 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=50.1
Q ss_pred CCchhhhhhhhhhHHhhhcccc-chhHHHHHhHHH-Hhhc-CCccccccccccCCceecCchhh--hhhhhh
Q 018602 42 MPGKRHVRLINLAKWLVESAWV-ALRLFQERCEEE-LLWA-AEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 42 ~~~~~~~~~c~l~~~~m~d~~~-~~~~~~eR~~~e-~~~g-~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
+|++|. |||+.++|.|||+ ++|.+|||..++ |+.. +.+||.|++++...+++||+.|| |++|+.
T Consensus 1 iP~~f~---CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 1 IPDEFL---CPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCA 69 (73)
T ss_dssp SSGGGB----TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHH
T ss_pred CCcccC---CcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHH
Confidence 467776 9999999999986 568999998555 4544 89999999999999999999999 999998
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=4.3e-11 Score=116.32 Aligned_cols=192 Identities=15% Similarity=0.076 Sum_probs=150.9
Q ss_pred CCChhhHHHHHHHHHHHHHhChhhhhHHHhcC--CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhcc
Q 018602 143 SEDQTGGRDLVAKIKKWIKESERNKRCIVDYG--AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG 220 (353)
Q Consensus 143 ~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG--~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~ 220 (353)
++|+..|.-+-..|-.++- +.++|+.++++| ++|.|+++...++ .+++..|--+|.+|+ .+.+...-+.
T Consensus 219 s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s-------~kvkcqA~lALrnla-sdt~Yq~eiv 289 (550)
T KOG4224|consen 219 SGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGS-------DKVKCQAGLALRNLA-SDTEYQREIV 289 (550)
T ss_pred cCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCC-------hHHHHHHHHHHhhhc-ccchhhhHHH
Confidence 4566666555555666655 356999999998 9999999998763 467777767788874 4667777788
Q ss_pred CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCC
Q 018602 221 SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASA 300 (353)
Q Consensus 221 ~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~ 300 (353)
+.|.+|.++++|++....--...++-+.+++ ..+-+-..|... ||+.+||++|+-+.+....-.|..+|+||.-..
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnis-ihplNe~lI~da-gfl~pLVrlL~~~dnEeiqchAvstLrnLAass-- 365 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNIS-IHPLNEVLIADA-GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-- 365 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcc-cccCcccceecc-cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh--
Confidence 9999999999998876666677888898897 657666777676 999999999998766678888999999997533
Q ss_pred CCchHHHHHHcCcHHHHHHHhhhccccchhhhh-----ccCCHHHHHHHhccC
Q 018602 301 ADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFSTDFAAVITGEER 348 (353)
Q Consensus 301 ~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~~~~eGR~ai~~~~ 348 (353)
++|+..+.++|+|+-|.+++.|+..++-+..- |+-..+-|.++.+..
T Consensus 366 -e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~g 417 (550)
T KOG4224|consen 366 -EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSG 417 (550)
T ss_pred -hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcC
Confidence 38999999999999999999998666555544 666677777776654
No 6
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.29 E-value=1.5e-10 Score=122.89 Aligned_cols=177 Identities=15% Similarity=0.188 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHH
Q 018602 152 LVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWF 231 (353)
Q Consensus 152 Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~ 231 (353)
++.-|-.++. +.+++.-|.+.|.++.|+.+|.+. +.+++-.+++.|..| +...+||..|++.|+++.|+++
T Consensus 269 ~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~-------n~ellil~v~fLkkL-Si~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 269 AFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRE-------NEELLILAVTFLKKL-SIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHHHH
Confidence 4444555555 456888899999999999999754 467888899999998 5678999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc
Q 018602 232 LKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM 311 (353)
Q Consensus 232 L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea 311 (353)
+.+++.+.+..|..+|++|| .+++.+..|-+. |++|.|+.+|.++ .....++.+|||||... ++|..+...
T Consensus 340 l~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~-GlIPkLv~LL~d~---~~~~val~iLy~LS~dd----~~r~~f~~T 410 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLS-FDPELRSQMVSL-GLIPKLVELLKDP---NFREVALKILYNLSMDD----EARSMFAYT 410 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHC-CCcHHHHHHhCCC---chHHHHHHHHHHhccCH----hhHHHHhhc
Confidence 99999999999999999998 557777777576 9999999999865 34456999999999986 899999999
Q ss_pred CcHHHHHHHhhhccccchhh---hh---ccCCHHHHHHHhc
Q 018602 312 GLVSLLLETLVDAQRSLCEK---PW---VFSTDFAAVITGE 346 (353)
Q Consensus 312 GaV~~LlelL~~~~~~~~E~---aL---L~~~~eGR~ai~~ 346 (353)
++|+.|+++|..+...-++. +| |+..+.--+.|+.
T Consensus 411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~ 451 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE 451 (708)
T ss_pred chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh
Confidence 99999999997653322222 22 6666655555553
No 7
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.08 E-value=3.1e-09 Score=112.99 Aligned_cols=163 Identities=17% Similarity=0.122 Sum_probs=136.5
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
++.+...-++.-|+.|+--. +||..|.+.|+++.|+.++.+. +.++++.++.+|.|| +.+.++|..|.+.|
T Consensus 302 ~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~-------~~~l~~~aLrlL~NL-Sfd~~~R~~mV~~G 372 (708)
T PF05804_consen 302 ENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSE-------NEDLVNVALRLLFNL-SFDPELRSQMVSLG 372 (708)
T ss_pred CCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCC-------CHHHHHHHHHHHHHh-CcCHHHHHHHHHCC
Confidence 34455555777778777654 4999999999999999999765 457899999999999 56788899999999
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
++|.++.+|++++ .+..+..+|+.|| .+++.+..++.+ ++++.|++++-++..++...+++..++||+..+ +
T Consensus 373 lIPkLv~LL~d~~--~~~val~iLy~LS-~dd~~r~~f~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~----r 444 (708)
T PF05804_consen 373 LIPKLVELLKDPN--FREVALKILYNLS-MDDEARSMFAYT-DCIPQLMQMLLENSEEEVQLELIALLINLALNK----R 444 (708)
T ss_pred CcHHHHHHhCCCc--hHHHHHHHHHHhc-cCHhhHHHHhhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcCH----H
Confidence 9999999998765 4578999999998 668899999777 899999998765546666677899999999987 8
Q ss_pred hHHHHHHcCcHHHHHHHhhh
Q 018602 304 PIQKFVDMGLVSLLLETLVD 323 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~ 323 (353)
|...+.+.|.++.|++....
T Consensus 445 naqlm~~g~gL~~L~~ra~~ 464 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALK 464 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHh
Confidence 99999999999999987654
No 8
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.89 E-value=2.8e-10 Score=84.34 Aligned_cols=58 Identities=17% Similarity=0.079 Sum_probs=50.5
Q ss_pred hhhhhhHHhhhccccch-hHHHHHh-HHHHhhcCCccccccccccCCceecCchhh--hhhh
Q 018602 49 RLINLAKWLVESAWVAL-RLFQERC-EEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQT 106 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~-~~~~eR~-~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w 106 (353)
++|||++++|+|||+.+ |..|+|. ..+|+..+.+||.|++++...+++||..|| |++|
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 46999999999998754 7766666 666777799999999999999999999999 9998
No 9
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.89 E-value=1.1e-07 Score=90.17 Aligned_cols=186 Identities=13% Similarity=0.134 Sum_probs=147.0
Q ss_pred CChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHH
Q 018602 125 MSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILST 204 (353)
Q Consensus 125 ~~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~ 204 (353)
.++.++..++.-|... .|+.-+..++-.+-.. ...+.||..+.+.|.++.+..+|... ++.+++.|+.+
T Consensus 9 l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p-------~~~vr~~AL~a 77 (254)
T PF04826_consen 9 LEAQELQKLLCLLEST---EDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDP-------NPSVREKALNA 77 (254)
T ss_pred cCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCC-------ChHHHHHHHHH
Confidence 5677888888888653 4666666666666665 44678999999999999999999765 46789999999
Q ss_pred HHhcCCCChhHHhhccCCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChh
Q 018602 205 LTLLFPLAGEALTYLGSASSMHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPT 282 (353)
Q Consensus 205 L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~g--s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~ 282 (353)
|.+| +.+.+|+..|.. .++.+.+-+.++ +.+.+..+..+|.+|+ ..+++...+. +.++.++.+|..| +..
T Consensus 78 L~Nl-s~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt-v~~~~~~~l~---~~i~~ll~LL~~G-~~~ 149 (254)
T PF04826_consen 78 LNNL-SVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLT-VTNDYHHMLA---NYIPDLLSLLSSG-SEK 149 (254)
T ss_pred HHhc-CCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccC-CCcchhhhHH---hhHHHHHHHHHcC-ChH
Confidence 9998 446777776643 677777766665 6688889999999997 5466666773 4699999999988 778
Q ss_pred HHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhc-cccchhhhh
Q 018602 283 ATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA-QRSLCEKPW 333 (353)
Q Consensus 283 a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~-~~~~~E~aL 333 (353)
.+..++++|.||+..+ .+...++.++++..++.++... .+.+.-.+|
T Consensus 150 ~k~~vLk~L~nLS~np----~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l 197 (254)
T PF04826_consen 150 TKVQVLKVLVNLSENP----DMTRELLSAQVLSSFLSLFNSSESKENLLRVL 197 (254)
T ss_pred HHHHHHHHHHHhccCH----HHHHHHHhccchhHHHHHHccCCccHHHHHHH
Confidence 8899999999999886 7999999999999999998654 444555555
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.85 E-value=6.6e-08 Score=78.55 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=100.9
Q ss_pred HHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018602 170 IVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLRE 249 (353)
Q Consensus 170 i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~ 249 (353)
+.+.|+++.|+.++... +..+++.++.+|.+++..+++.+..+.+.+.++.++.+|+.++...+.+|+.+|.+
T Consensus 3 ~~~~~~i~~l~~~l~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~ 75 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRN 75 (120)
T ss_pred HHHcCChHHHHHHHHcC-------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56789999999999755 35789999999999976557777777778999999999999999999999999999
Q ss_pred HhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 250 VISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 250 Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
|+...+.....+... |+++.|++++.++ +....+.|+.+|.|||.
T Consensus 76 l~~~~~~~~~~~~~~-g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 76 LAAGPEDNKLIVLEA-GGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HccCcHHHHHHHHHC-CChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 986655666666454 9999999999877 78999999999999973
No 11
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.8e-07 Score=93.27 Aligned_cols=187 Identities=16% Similarity=0.210 Sum_probs=149.8
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 018602 130 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 209 (353)
Q Consensus 130 v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~ 209 (353)
+..+|.-+.. ..++.-+.+|+..|..+|..+.+.-+.++++|++|.++.++.+. +..++|.|+-+|.+++
T Consensus 111 v~~lV~~l~~---~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~-------~~~v~eQavWALgNIa 180 (514)
T KOG0166|consen 111 VPRLVEFLSR---DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP-------SADVREQAVWALGNIA 180 (514)
T ss_pred HHHHHHHHcc---CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-------cHHHHHHHHHHHhccc
Confidence 3455555542 23467789999999999999999999999999999999999876 4579999999999986
Q ss_pred CCChhHHhhccCCCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhccch--HHHHHhhhhhchHHHHHHhhcCCCChhHHHH
Q 018602 210 PLAGEALTYLGSASSMHCMVWFLKSGD-LSRRRNTVLVLREVISSDH--RRVNMFLEIEGAIESLYTLIKEPICPTATEA 286 (353)
Q Consensus 210 ~~~~e~k~~l~~~~~l~~Lv~~L~~gs-~~~R~~Aa~lL~~Lss~~~--~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~ 286 (353)
-.....|..+.+.|.++.|..++...+ .....+++-+|.+|+.-.. -....+ ..+++.|..+|... ++....|
T Consensus 181 gds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v---~~iLp~L~~ll~~~-D~~Vl~D 256 (514)
T KOG0166|consen 181 GDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV---APILPALLRLLHST-DEEVLTD 256 (514)
T ss_pred cCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH---HHHHHHHHHHHhcC-CHHHHHH
Confidence 555778888889999999999998875 4778899999999985432 112233 47899999999876 8899999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 287 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 287 Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
|..+|-+|+... .+-..-++++|.++.|+++|...+..+.--||
T Consensus 257 a~WAlsyLsdg~---ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaL 300 (514)
T KOG0166|consen 257 ACWALSYLTDGS---NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPAL 300 (514)
T ss_pred HHHHHHHHhcCC---hHHHHHHHHccchHHHHHHHcCCCcccccHHH
Confidence 999999999754 26788889999999999999765544443444
No 12
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=3.4e-07 Score=93.62 Aligned_cols=216 Identities=13% Similarity=0.164 Sum_probs=158.7
Q ss_pred hhhhhhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHH
Q 018602 101 LLYQQTKFNLQREKSEGYAKLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLA 180 (353)
Q Consensus 101 L~i~~w~~~l~r~~~~g~~tp~~p~~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv 180 (353)
+|-..|+. .|-..|-. |.||.+ .+..++.-+.-.-...|+.-+..|.-.|+.|+..+.+.=..+.++|++|.|+
T Consensus 212 lRn~tW~L---sNlcrgk~-P~P~~~--~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV 285 (514)
T KOG0166|consen 212 LRNATWTL---SNLCRGKN-PSPPFD--VVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLV 285 (514)
T ss_pred HHHHHHHH---HHHHcCCC-CCCcHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHH
Confidence 44678986 33333322 444543 3443333332222234777777899999999998887777788999999999
Q ss_pred HHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHH
Q 018602 181 AAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVN 259 (353)
Q Consensus 181 ~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Lss~~~~~~~ 259 (353)
.+|.... ..++--||.++-++...+++....+.+.+.++.+..+|.+. .-..|..|+-+|-+++.-..+...
T Consensus 286 ~lL~~~~-------~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiq 358 (514)
T KOG0166|consen 286 DLLGHSS-------PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQ 358 (514)
T ss_pred HHHcCCC-------cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHH
Confidence 9997763 23566677888877666677777778999999999999854 555889999999999854444454
Q ss_pred HhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 260 MFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 260 ~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
.+-.. |+++.|+.++..+ +-+.+|.|..|+-|++.... .+=...+|+.|.|+++-.+|.-.+..+...+|
T Consensus 359 aVida-~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii~v~L 428 (514)
T KOG0166|consen 359 AVIDA-NLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKIILVAL 428 (514)
T ss_pred HHHHc-ccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHHHHHH
Confidence 45477 9999999999987 57899999999999987541 35678899999999999999644555555555
No 13
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.74 E-value=1.2e-07 Score=77.03 Aligned_cols=109 Identities=16% Similarity=0.247 Sum_probs=93.4
Q ss_pred cCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 018602 220 GSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSAS 299 (353)
Q Consensus 220 ~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~ 299 (353)
.+.|.++.++.+|++++...|..|+..|.+++...++....+-+ .|+++.|+++++++ +++..+.|+.+|.|++...
T Consensus 4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~- 80 (120)
T cd00020 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP- 80 (120)
T ss_pred HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc-
Confidence 35689999999999999999999999999998665666655535 49999999999987 8899999999999999875
Q ss_pred CCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 300 AADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 300 ~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
+.++..+++.|+++.|+++|.+.+..+.+.++
T Consensus 81 --~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~ 112 (120)
T cd00020 81 --EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNAT 112 (120)
T ss_pred --HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHH
Confidence 35788899999999999999877666777666
No 14
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.39 E-value=1.6e-05 Score=77.49 Aligned_cols=189 Identities=14% Similarity=0.170 Sum_probs=138.6
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhh-hHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNK-RCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 207 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR-~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~ 207 (353)
++..+.+++-| .|.+.+.+|+.+.|.+......-- ..+.++|++|-++.++.+..+ ..++-+|.=+|.+
T Consensus 72 elp~lt~~l~S----dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~------~mlqfEAaWalTN 141 (526)
T COG5064 72 ELPQLTQQLFS----DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQR------DMLQFEAAWALTN 141 (526)
T ss_pred hhHHHHHHHhh----hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcch------hHHHHHHHHHHhh
Confidence 34455666654 477888999999998776543322 347788999999999976532 2345577678999
Q ss_pred cCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC-CChhHHHH
Q 018602 208 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP-ICPTATEA 286 (353)
Q Consensus 208 L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~-~s~~a~k~ 286 (353)
+++......+++.+.|++|.++.+|.+++.+.|++|+=+|=+++..++..+..+-.. |+++.|++++.+. .+-...+.
T Consensus 142 iaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~-galeplL~ll~ss~~~ismlRn 220 (526)
T COG5064 142 IASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC-GALEPLLGLLLSSAIHISMLRN 220 (526)
T ss_pred hccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc-CchHHHHHHHHhccchHHHHHH
Confidence 876554445567799999999999999999999999999999998777788777565 9999999998754 45688899
Q ss_pred HHHHHHHhhcCC--CCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 287 SFVVVYHMITSA--SAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 287 Al~aL~nLc~~~--~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
|-.+|-|||-.+ +....|..+ +++.|.+++-..+..+.-.|.
T Consensus 221 ~TWtLSNlcRGknP~P~w~~isq-----alpiL~KLiys~D~evlvDA~ 264 (526)
T COG5064 221 ATWTLSNLCRGKNPPPDWSNISQ-----ALPILAKLIYSRDPEVLVDAC 264 (526)
T ss_pred hHHHHHHhhCCCCCCCchHHHHH-----HHHHHHHHHhhcCHHHHHHHH
Confidence 999999999643 101124444 577888887544444444443
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.39 E-value=2.4e-05 Score=81.14 Aligned_cols=175 Identities=14% Similarity=0.151 Sum_probs=141.5
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC
Q 018602 132 EINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL 211 (353)
Q Consensus 132 ~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~ 211 (353)
.+...+..+ ++.-+.-+++.|+.++.+++..-..+.+.++++.++..+... +..+.+.|..+|..|+.
T Consensus 81 ~L~~gL~h~----~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-------d~~Va~~A~~~L~~l~~- 148 (503)
T PF10508_consen 81 FLQRGLTHP----SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-------DLSVAKAAIKALKKLAS- 148 (503)
T ss_pred HHHHHhcCC----CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-------cHHHHHHHHHHHHHHhC-
Confidence 344455433 345555688889999988877666778889999999999654 45789999999999865
Q ss_pred ChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHH
Q 018602 212 AGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVV 291 (353)
Q Consensus 212 ~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL 291 (353)
....-..+..++.+..|..++.+.+...|.....++-++++.+++....+-++ |+++.+++-++++ +.-.+..|+.+|
T Consensus 149 ~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~s-gll~~ll~eL~~d-DiLvqlnalell 226 (503)
T PF10508_consen 149 HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNS-GLLDLLLKELDSD-DILVQLNALELL 226 (503)
T ss_pred CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhc-cHHHHHHHHhcCc-cHHHHHHHHHHH
Confidence 33334445577779999999998787888889999999998888777777565 9999999999885 888999999999
Q ss_pred HHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhc
Q 018602 292 YHMITSASAADKPIQKFVDMGLVSLLLETLVDA 324 (353)
Q Consensus 292 ~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~ 324 (353)
..|+..+ .+...+++.|+++.|.+++.+.
T Consensus 227 ~~La~~~----~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 227 SELAETP----HGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHcCh----hHHHHHHhCCHHHHHHHHHhcc
Confidence 9999876 7999999999999999999643
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.30 E-value=9.1e-06 Score=85.91 Aligned_cols=176 Identities=14% Similarity=0.126 Sum_probs=141.3
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 018602 130 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 209 (353)
Q Consensus 130 v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~ 209 (353)
+.+.++-+.+. ++..|-.|...|..++..+.+-|..+.+-|.|+.|+.+|.+. +.+|+..|..+|.||.
T Consensus 235 lpe~i~mL~~q----~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-------~~evq~~acgaLRNLv 303 (717)
T KOG1048|consen 235 LPEVISMLMSQ----DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-------NDEVQRQACGALRNLV 303 (717)
T ss_pred cHHHHHHHhcc----ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-------cHHHHHHHHHHHHhhh
Confidence 34555555543 556777899999999999999999999999999999999876 4689999999999986
Q ss_pred CCC--hhHHhhccCCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCC-------
Q 018602 210 PLA--GEALTYLGSASSMHCMVWFLKS-GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPI------- 279 (353)
Q Consensus 210 ~~~--~e~k~~l~~~~~l~~Lv~~L~~-gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~------- 279 (353)
-.. ++||-.|.+-+-++.++++|++ ++.+.|++.+.+|-+||+. |..|..| .. .++..|.+-+-.+.
T Consensus 304 f~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~i-i~-~al~tLt~~vI~P~Sgw~~~~ 380 (717)
T KOG1048|consen 304 FGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLI-IT-SALSTLTDNVIIPHSGWEEEP 380 (717)
T ss_pred cccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHH-HH-HHHHHHHHhhcccccccCCCC
Confidence 433 4688889999999999999998 7999999999999999977 7777777 33 68888886643211
Q ss_pred ------ChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc-CcHHHHHHHhh
Q 018602 280 ------CPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLV 322 (353)
Q Consensus 280 ------s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea-GaV~~LlelL~ 322 (353)
.......+.-+|.|+++.. .+.|.+|=+. |.|..|+-.+.
T Consensus 381 ~~~~~~~~~vf~n~tgcLRNlSs~~---~eaR~~mr~c~GLIdaL~~~iq 427 (717)
T KOG1048|consen 381 APRKAEDSTVFRNVTGCLRNLSSAG---QEAREQMRECDGLIDALLFSIQ 427 (717)
T ss_pred cccccccceeeehhhhhhccccchh---HHHHHHHhhccchHHHHHHHHH
Confidence 1345677888999998743 3789998875 99999999886
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=7.3e-05 Score=72.87 Aligned_cols=174 Identities=10% Similarity=0.122 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCCh--------h-HHhh
Q 018602 148 GGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAG--------E-ALTY 218 (353)
Q Consensus 148 ~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~--------e-~k~~ 218 (353)
.-...+.-++.-+-.++.||..+.+.|+.|.+.++|...+. + ++..++-.++..|...|+ . .-+.
T Consensus 163 lt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk-----~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ 236 (461)
T KOG4199|consen 163 VTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGK-----T-RTVRELYDAIRALLTDDDIRVVFGQAHGHART 236 (461)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCc-----c-HHHHHHHHHHHHhcCCCceeeecchhhHHHHH
Confidence 33457788888899999999999999999999999966543 2 233333344433322221 1 1234
Q ss_pred ccCCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCCh---hHHHHHHHHHHHh
Q 018602 219 LGSASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICP---TATEASFVVVYHM 294 (353)
Q Consensus 219 l~~~~~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~---~a~k~Al~aL~nL 294 (353)
|+..+.+..|++.|+.| ++..-..+...|..|+ +.++.+..|..+ |.+..|++++.+.... .+.|.+++.|..|
T Consensus 237 ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA-Vr~E~C~~I~e~-GGl~tl~~~i~d~n~~~~r~l~k~~lslLral 314 (461)
T KOG4199|consen 237 IAKEGILTALTEALQAGIDPDSLVSLSTTLKALA-VRDEICKSIAES-GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL 314 (461)
T ss_pred HHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH-HHHHHHHHHHHc-cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Confidence 55566899999999998 7777788889999997 668888888787 9999999999874332 3667888888899
Q ss_pred hcCCCCCCchHHHHHHcCcHHHHHHHhhhc--cccchhhhh
Q 018602 295 ITSASAADKPIQKFVDMGLVSLLLETLVDA--QRSLCEKPW 333 (353)
Q Consensus 295 c~~~~~~~~Nr~~~VeaGaV~~LlelL~~~--~~~~~E~aL 333 (353)
.-.. .|+..+|+.|..+.++.++..- ++.+++.++
T Consensus 315 AG~D----svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 315 AGSD----SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred hCCC----chHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 8775 8999999999999999998642 556666666
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.21 E-value=3.8e-05 Score=72.95 Aligned_cols=159 Identities=10% Similarity=0.059 Sum_probs=121.6
Q ss_pred HhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 018602 171 VDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREV 250 (353)
Q Consensus 171 ~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~L 250 (353)
-+++-.+.|+.+|.... ++.++|.|+.+|.+. .....++.++.+.|.++.+..+|..++...|..|..+|.++
T Consensus 9 l~~~~l~~Ll~lL~~t~------dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTE------DPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNL 81 (254)
T ss_pred cCHHHHHHHHHHHhcCC------ChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhc
Confidence 45566788999998763 357899999999986 34578999999999999999999999999999999999999
Q ss_pred hccchHHHHHhhhhhchHHHHHHhhc-CCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccch
Q 018602 251 ISSDHRRVNMFLEIEGAIESLYTLIK-EPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLC 329 (353)
Q Consensus 251 ss~~~~~~~~IG~~~gai~~LV~lL~-~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~ 329 (353)
+ ...++...| + ..+..+.+.+. ...+.....+++++|.||+... .+ ..++ ++.++.++++|..++..+-
T Consensus 82 s-~~~en~~~I-k--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~----~~-~~~l-~~~i~~ll~LL~~G~~~~k 151 (254)
T PF04826_consen 82 S-VNDENQEQI-K--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN----DY-HHML-ANYIPDLLSLLSSGSEKTK 151 (254)
T ss_pred C-CChhhHHHH-H--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc----ch-hhhH-HhhHHHHHHHHHcCChHHH
Confidence 7 546777777 3 46777776543 3334567788999999998764 34 4444 4589999999988765555
Q ss_pred hhhh-----ccCCHHH-HHHHhc
Q 018602 330 EKPW-----VFSTDFA-AVITGE 346 (353)
Q Consensus 330 E~aL-----L~~~~eG-R~ai~~ 346 (353)
..+| |+.++.= |+-+..
T Consensus 152 ~~vLk~L~nLS~np~~~~~Ll~~ 174 (254)
T PF04826_consen 152 VQVLKVLVNLSENPDMTRELLSA 174 (254)
T ss_pred HHHHHHHHHhccCHHHHHHHHhc
Confidence 5555 8888874 444433
No 19
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00032 Score=74.48 Aligned_cols=199 Identities=13% Similarity=0.191 Sum_probs=152.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHH
Q 018602 118 YAKLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSV 197 (353)
Q Consensus 118 ~~tp~~p~~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v 197 (353)
...|+.+-..+.+..|+.++.++.- .++++.|++.|+.++|+ .|.-++..|. +.|+.+|.... .++++
T Consensus 12 ~q~~k~~s~aETI~kLcDRvessTL---~eDRR~A~rgLKa~srk---YR~~Vga~Gm-k~li~vL~~D~-----~D~E~ 79 (970)
T KOG0946|consen 12 QQPPKQQSAAETIEKLCDRVESSTL---LEDRRDAVRGLKAFSRK---YREEVGAQGM-KPLIQVLQRDY-----MDPEI 79 (970)
T ss_pred CCCCccccHHhHHHHHHHHHhhccc---hhhHHHHHHHHHHHHHH---HHHHHHHccc-HHHHHHHhhcc-----CCHHH
Confidence 3456667778899999999977542 35568899999999985 5666666665 55558885542 35788
Q ss_pred HHHHHHHHHhcCCCCh------hHH-----------hhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-HHHH
Q 018602 198 LEEILSTLTLLFPLAG------EAL-----------TYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH-RRVN 259 (353)
Q Consensus 198 ~E~AL~~L~~L~~~~~------e~k-----------~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~-~~~~ 259 (353)
.--||.+++++..-++ ..+ ..|.+.+.|.+++.++..-+...|..|+-+|.+|.+..+ +.+.
T Consensus 80 ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~ 159 (970)
T KOG0946|consen 80 IKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQD 159 (970)
T ss_pred HHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHH
Confidence 8899999888865332 112 135578999999999999999999999999999987764 5666
Q ss_pred HhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc-CcHHHHHHHhhhc---cc-cchhhhh
Q 018602 260 MFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLVDA---QR-SLCEKPW 333 (353)
Q Consensus 260 ~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea-GaV~~LlelL~~~---~~-~~~E~aL 333 (353)
.|-..|-.|..|+.+|+|. .-.-+.+|+-.|..|.... .+..++|.- .+..-|.+++.+. +. -++|.+|
T Consensus 160 ~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n----~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL 233 (970)
T KOG0946|consen 160 ALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDN----SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCL 233 (970)
T ss_pred HHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccC----chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 5557779999999999987 3346778899999998765 689999985 6889999999642 22 3788888
No 20
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00015 Score=70.91 Aligned_cols=180 Identities=11% Similarity=0.123 Sum_probs=138.4
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
.|++....|.-.|..++...-+--..+.+.|..+-|+.+|.+.+ ..++.-|++..-++...++.....+.+-|
T Consensus 255 ~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s-------a~iqtPalR~vGNIVTG~D~QTqviI~~G 327 (526)
T COG5064 255 RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES-------AKIQTPALRSVGNIVTGSDDQTQVIINCG 327 (526)
T ss_pred cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc-------ccccCHHHHhhcCeeecCccceehheecc
Confidence 36666677888888877655444445677799999999997652 45677788888887666666666777999
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-HHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCC
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDH-RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 302 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~-~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~ 302 (353)
+++.+-.+|++..-..|..|+=.|-++..-.. ..+..| .. .++|.||++|... +-..+|.|-.++.|+.+..-++.
T Consensus 328 ~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavi-d~-nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 328 ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVI-DA-NLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHH-hc-ccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCc
Confidence 99999999999877889999999999974433 455566 66 8999999999765 66889999999999977653344
Q ss_pred chHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 303 KPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 303 ~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
.-...+|+.|++.+|-.+|.-.+..+.|-+|
T Consensus 405 D~iryLv~qG~IkpLc~~L~~~dNkiiev~L 435 (526)
T COG5064 405 DIIRYLVSQGFIKPLCDLLDVVDNKIIEVAL 435 (526)
T ss_pred hHHHHHHHccchhHHHHHHhccCccchhhhH
Confidence 5778899999999999999755555555555
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00022 Score=72.37 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=136.1
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHH
Q 018602 120 KLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLE 199 (353)
Q Consensus 120 tp~~p~~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E 199 (353)
.|+...-++++..+-+++..... ..++--+-|+.-+-.+|.+- +---.|+.-.++..|+..|... |.++.-
T Consensus 252 ~p~netLk~e~dr~~kklk~~~~-KQeqLLrva~ylLlNlAed~-~~ElKMrrkniV~mLVKaLdr~-------n~~Ll~ 322 (791)
T KOG1222|consen 252 KPKNETLKEEIDRLNKKLKTAIR-KQEQLLRVAVYLLLNLAEDI-SVELKMRRKNIVAMLVKALDRS-------NSSLLT 322 (791)
T ss_pred CcchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHhHHHHHHHHHccc-------chHHHH
Confidence 34433335666666666644220 00111123555566666542 2333466668899999999654 445666
Q ss_pred HHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCC
Q 018602 200 EILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPI 279 (353)
Q Consensus 200 ~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~ 279 (353)
-+++-|.-| ++-.+||..+...+.+.-++++....+.+-|.....+|++|| .+..++..+-+. |.+|.|+.+|.+..
T Consensus 323 lv~~FLkKL-SIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlS-FD~glr~KMv~~-GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 323 LVIKFLKKL-SIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLS-FDSGLRPKMVNG-GLLPHLASLLDSDT 399 (791)
T ss_pred HHHHHHHHh-hhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcc-ccccccHHHhhc-cchHHHHHHhCCcc
Confidence 666777766 456899999999999999999999999999999999999998 434344434365 99999999997662
Q ss_pred ChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 280 CPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 280 s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
. ..-|+..||+++... +-+.-++-..+|+.|.+.+..+...-+.++|
T Consensus 400 ~---~~iA~~~lYh~S~dD----~~K~MfayTdci~~lmk~v~~~~~~~vdl~l 446 (791)
T KOG1222|consen 400 K---HGIALNMLYHLSCDD----DAKAMFAYTDCIKLLMKDVLSGTGSEVDLAL 446 (791)
T ss_pred c---chhhhhhhhhhccCc----HHHHHHHHHHHHHHHHHHHHhcCCceecHHH
Confidence 2 334899999998875 7888889999999999988765434444444
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0001 Score=74.63 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCCChhHHh--hccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHh
Q 018602 197 VLEEILSTLTLLFPLAGEALT--YLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTL 274 (353)
Q Consensus 197 v~E~AL~~L~~L~~~~~e~k~--~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~l 274 (353)
+...|+..|.+|+ ++.+. .+.....+..+|+.|...+.+--......|+.||-. +++|..++.- |.++.|+++
T Consensus 279 LLrva~ylLlNlA---ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~-~iveKL~kl 353 (791)
T KOG1222|consen 279 LLRVAVYLLLNLA---EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQN-GIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHh---hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhc-cHHHHHHHh
Confidence 4445666777764 22222 244567888999999988887777888899999844 7889999776 999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhc-cccchhhhh-ccCCHHHHH
Q 018602 275 IKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA-QRSLCEKPW-VFSTDFAAV 342 (353)
Q Consensus 275 L~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~-~~~~~E~aL-L~~~~eGR~ 342 (353)
+.-. +|...+..++.|||++--. .+|.+||..|.+|.|..+|.+. .++++-..| .-+|.+-..
T Consensus 354 fp~~-h~dL~~~tl~LlfNlSFD~----glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K 418 (791)
T KOG1222|consen 354 FPIQ-HPDLRKATLMLLFNLSFDS----GLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAK 418 (791)
T ss_pred cCCC-CHHHHHHHHHHhhhccccc----cccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHH
Confidence 9766 8999999999999999865 7999999999999999999653 456777777 444444333
No 23
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.86 E-value=0.00025 Score=79.31 Aligned_cols=191 Identities=14% Similarity=0.120 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcc----c--ccccchhHHHHHHHHHHHHhcCCCChhHHhhcc-CC
Q 018602 150 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESF----S--KTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG-SA 222 (353)
Q Consensus 150 ~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~----~--~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~-~~ 222 (353)
+.|+.-|.++.- +++.|+.|.+-|++.++..+|.-. . ..+ ..+..++.-|.-+|.||-..|..||..|- ..
T Consensus 316 caA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd-~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 316 CAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETND-GECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 356666666655 467999999999988888876221 1 111 12345677788899998777888999886 58
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-HHHHHhhhhhchHHHHHHh-hcCCCChhHHHHHHHHHHHhhcCCCC
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH-RRVNMFLEIEGAIESLYTL-IKEPICPTATEASFVVVYHMITSASA 300 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~-~~~~~IG~~~gai~~LV~l-L~~~~s~~a~k~Al~aL~nLc~~~~~ 300 (353)
|||+++|..|.+..-+-.+--+.+|.+||=-.| ..|+.+-. -|-+.+|+.. ++.. .-...|+-|.|||||+-+-
T Consensus 394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE-~GsVtaLa~~al~~~-kEsTLKavLSALWNLSAHc-- 469 (2195)
T KOG2122|consen 394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE-TGSVTALAACALRNK-KESTLKAVLSALWNLSAHC-- 469 (2195)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh-hhhHHHHHHHHHHhc-ccchHHHHHHHHhhhhhcc--
Confidence 999999999999887777888999999984434 34666634 4888888877 4433 3357889999999997654
Q ss_pred CCchHHHHHHc-CcHHHHHHHhh-hcc-c--cchhhhh---------ccCCHHHHHHHhcc
Q 018602 301 ADKPIQKFVDM-GLVSLLLETLV-DAQ-R--SLCEKPW---------VFSTDFAAVITGEE 347 (353)
Q Consensus 301 ~~~Nr~~~Vea-GaV~~LlelL~-~~~-~--~~~E~aL---------L~~~~eGR~ai~~~ 347 (353)
-+|+..+-.- |++..|+.+|. ++. + .+.|.+= +++|+.=|.-+..|
T Consensus 470 -teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~ 529 (2195)
T KOG2122|consen 470 -TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH 529 (2195)
T ss_pred -cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh
Confidence 3799988774 99999999997 321 1 2333332 78888777765544
No 24
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0029 Score=61.99 Aligned_cols=139 Identities=16% Similarity=0.201 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHH
Q 018602 150 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMV 229 (353)
Q Consensus 150 ~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv 229 (353)
.++++-||.++- ++.++.-|++.|..+.++.++..+.+ ++.+.++++.++..|..-..++-..+.+.|.-...+
T Consensus 305 k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~-----~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~av 378 (461)
T KOG4199|consen 305 KTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSD-----DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAV 378 (461)
T ss_pred HHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHH
Confidence 457777888886 45699999999999999999877643 578889988887776533444444555777778888
Q ss_pred HHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHh-hcC
Q 018602 230 WFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM-ITS 297 (353)
Q Consensus 230 ~~L~~g--s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nL-c~~ 297 (353)
..|+.- ....+.||+.++.++..-+.+++..+=. -.++.|++.-+.. ++.+..+|-.+|..| |..
T Consensus 379 qAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~--~GiE~Li~~A~~~-h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 379 QAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA--NGIEKLIRTAKAN-HETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh--ccHHHHHHHHHhc-CccHHHHHHHHHHhcCcch
Confidence 888765 4567789999999998776676666523 3578888887755 667777777888888 555
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.43 E-value=0.0074 Score=62.71 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=120.5
Q ss_pred cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 018602 173 YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVIS 252 (353)
Q Consensus 173 aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss 252 (353)
.+..+.|...|.+. ++.|++.++..|..+....+.....+.+.+.++.++..|..++.+....|+.+|..|++
T Consensus 76 ~~~~~~L~~gL~h~-------~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 76 PQYQPFLQRGLTHP-------SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC
Confidence 35667777777654 46789999998877643334445567789999999999999999999999999999986
Q ss_pred cchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhh
Q 018602 253 SDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKP 332 (353)
Q Consensus 253 ~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~a 332 (353)
.......++ .. +.+..|.+++... +...+-.+..++.+++..+ .......+..|.++.++..|.+.|.-+..-+
T Consensus 149 ~~~~~~~l~-~~-~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S---~~~~~~~~~sgll~~ll~eL~~dDiLvqlna 222 (503)
T PF10508_consen 149 HPEGLEQLF-DS-NLLSKLKSLMSQS-SDIVRCRVYELLVEIASHS---PEAAEAVVNSGLLDLLLKELDSDDILVQLNA 222 (503)
T ss_pred CchhHHHHh-Cc-chHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcC---HHHHHHHHhccHHHHHHHHhcCccHHHHHHH
Confidence 644443344 54 6699999998764 4455666899999998765 2566677778999999999977543233333
Q ss_pred h-----ccCCHHHHHHHhcc
Q 018602 333 W-----VFSTDFAAVITGEE 347 (353)
Q Consensus 333 L-----L~~~~eGR~ai~~~ 347 (353)
+ |+.+..|..-+...
T Consensus 223 lell~~La~~~~g~~yL~~~ 242 (503)
T PF10508_consen 223 LELLSELAETPHGLQYLEQQ 242 (503)
T ss_pred HHHHHHHHcChhHHHHHHhC
Confidence 3 88899998877654
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.38 E-value=0.0075 Score=60.82 Aligned_cols=178 Identities=11% Similarity=0.085 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcc-cccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHH
Q 018602 150 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESF-SKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCM 228 (353)
Q Consensus 150 ~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~-~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~L 228 (353)
.+..=++-.-+.+++.-+-.++++|.++-+..++..- ..............+-....+|...|+.-..+...|.+++.+
T Consensus 241 ~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~ 320 (604)
T KOG4500|consen 241 DEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFL 320 (604)
T ss_pred hhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHH
Confidence 3455566666778888888899999999999999762 111000011112222233333333455555666778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC----CCChhHHHHHHHHHHHhhcCCCCCCch
Q 018602 229 VWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE----PICPTATEASFVVVYHMITSASAADKP 304 (353)
Q Consensus 229 v~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~----~~s~~a~k~Al~aL~nLc~~~~~~~~N 304 (353)
+..+++.+......++..|=+++.. |+++.-+-.. |++..|+..|-. ..+.+-..+++.+|.|+.... .|
T Consensus 321 ~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~-~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv----~n 394 (604)
T KOG4500|consen 321 ESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQK-DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV----SN 394 (604)
T ss_pred HHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHH-HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC----Cc
Confidence 9999999988888899999999865 4444444364 999999999742 126688899999999998765 79
Q ss_pred HHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 305 IQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 305 r~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
|..++.+|++++++..|.-..+.++=|-|
T Consensus 395 ka~~~~aGvteaIL~~lk~~~ppv~fkll 423 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPPVTFKLL 423 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCcchHHHH
Confidence 99999999999999888654444444444
No 27
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.24 E-value=0.0015 Score=73.27 Aligned_cols=193 Identities=11% Similarity=0.060 Sum_probs=136.7
Q ss_pred HHHHHHHHHH-----HhChhhhhHHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhHHhhccCCC
Q 018602 151 DLVAKIKKWI-----KESERNKRCIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEALTYLGSAS 223 (353)
Q Consensus 151 ~Al~~Lr~La-----kes~~nR~~i~~a-G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~-~~~e~k~~l~~~~ 223 (353)
.++++...++ -.+..||+.++.. |+++++|.-|.+.. .++++...++|.||+= -|...|+++-+.|
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-------eeL~QV~AsvLRNLSWRAD~nmKkvLrE~G 437 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-------EELLQVYASVLRNLSWRADSNMKKVLRETG 437 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-------HHHHHHHHHHHHhccccccccHHHHHHhhh
Confidence 3666555444 4567799999887 99999999997753 2566666689998842 3344577777777
Q ss_pred cHHHHHHH-HhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC---CChhHHHHHHHHHHHhhcCCC
Q 018602 224 SMHCMVWF-LKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP---ICPTATEASFVVVYHMITSAS 299 (353)
Q Consensus 224 ~l~~Lv~~-L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~---~s~~a~k~Al~aL~nLc~~~~ 299 (353)
.+..|+.+ |++..-.+-..-..+|.+||...-+||..|-..+|++.+||.+|.-. .....++.|--+|.|++.+--
T Consensus 438 sVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA 517 (2195)
T KOG2122|consen 438 SVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA 517 (2195)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh
Confidence 76666665 55443333456678899999766789999999999999999999743 345677888889999865432
Q ss_pred CCCchHHHHHHcCcHHHHHHHhhhccccchhhhh------ccCCHHHHHHHhccCCc
Q 018602 300 AADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW------VFSTDFAAVITGEERPT 350 (353)
Q Consensus 300 ~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL------L~~~~eGR~ai~~~~~~ 350 (353)
.++.-|.-+-+...+..|+.+|....-.++-.++ -+.+++-.+.+..+..+
T Consensus 518 t~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv 574 (2195)
T KOG2122|consen 518 TCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAV 574 (2195)
T ss_pred ccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccH
Confidence 2345677788889999999999754333333333 55677777777766554
No 28
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.08 E-value=0.015 Score=58.82 Aligned_cols=184 Identities=13% Similarity=0.063 Sum_probs=130.5
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
.|..-+.-+.-.|..+++.++ +-..|++.|++..|.++|....+. ++|.++|..++++|.+|. +--.||..+...|
T Consensus 327 ~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~v--dgnV~~qhA~lsALRnl~-IPv~nka~~~~aG 402 (604)
T KOG4500|consen 327 DDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDV--DGNVERQHACLSALRNLM-IPVSNKAHFAPAG 402 (604)
T ss_pred CchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCC--CccchhHHHHHHHHHhcc-ccCCchhhccccc
Confidence 344555556667888888765 778899999999999999763221 357888999999999985 4456888888999
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchH-HHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCC
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHR-RVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 302 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~-~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~ 302 (353)
....+..+|+..++....--...+..+- .+.+ ...-+|+.+..++.||+--+.+.....+-.+.+.|..+..+.. -.
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~-d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~-~k 480 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIR-DSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSK-YK 480 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHH-hchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhH-hh
Confidence 9999999999887665555455555443 2223 3445667778999999987766555566778888888865420 01
Q ss_pred chHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 303 KPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 303 ~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
+-...+++.|.|...+.++....--+-+.||
T Consensus 481 dv~~tvpksg~ik~~Vsm~t~~hi~mqnEal 511 (604)
T KOG4500|consen 481 DVILTVPKSGGIKEKVSMFTKNHINMQNEAL 511 (604)
T ss_pred hhHhhccccccHHHHHHHHHHhhHHHhHHHH
Confidence 4566778889999999988654333444444
No 29
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.01 E-value=0.016 Score=56.31 Aligned_cols=170 Identities=13% Similarity=0.098 Sum_probs=116.1
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
+|..-+..|..-+..+...++....... .++++.+++.+.+... ..+.+++.-++..|..|. -.++.|..+.+.+
T Consensus 117 ~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~---~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~ 191 (312)
T PF03224_consen 117 NDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLS---SSDSELQYIAVQCLQNLL-RSKEYRQVFWKSN 191 (312)
T ss_dssp SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT----HHHH---HHHHHHHHHHH-TSHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhc---CCCcchHHHHHHHHHHHh-CcchhHHHHHhcC
Confidence 4666677788888888777664333322 4667888888866421 123456788888888773 3578888888899
Q ss_pred cHHHHHHHH------hcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 224 SMHCMVWFL------KSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 224 ~l~~Lv~~L------~~g-s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
.++.+..+| .++ ...-.-++...+--|| ..++....+-.. ++|+.|+++++...--+.++-++.+|.|++.
T Consensus 192 ~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~-~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 192 GVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS-FEPEIAEELNKK-YLIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHHHHT-TSHHHHHHHHTT-SHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh-cCHHHHHHHhcc-chHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 999999999 233 4455556666666665 667766666454 7999999999976667899999999999987
Q ss_pred CCCCCCchHHHHHHcCcHHHHHHHhh
Q 018602 297 SASAADKPIQKFVDMGLVSLLLETLV 322 (353)
Q Consensus 297 ~~~~~~~Nr~~~VeaGaV~~LlelL~ 322 (353)
.. ++.+...|+..|..+.+-.+..
T Consensus 270 ~~--~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 270 KA--PKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp SS--STTHHHHHHHH-HHHHHHHHHS
T ss_pred cc--HHHHHHHHHHccHHHHHHHHhc
Confidence 65 1129999999988877766653
No 30
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.86 E-value=0.0017 Score=43.82 Aligned_cols=39 Identities=33% Similarity=0.336 Sum_probs=34.6
Q ss_pred ChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 163 SERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 163 s~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
+++||..+.++|++|.|+.+|.+. +.+++++|+.+|.+|
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-------~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-------DPEVQEEAAWALGNL 39 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-------SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 467999999999999999999854 468999999999987
No 31
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.83 E-value=0.0089 Score=63.76 Aligned_cols=151 Identities=12% Similarity=0.053 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccc--hHHHHHhhhhhchHHHHH
Q 018602 195 VSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD--HRRVNMFLEIEGAIESLY 272 (353)
Q Consensus 195 ~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~--~~~~~~IG~~~gai~~LV 272 (353)
..++-+|-+-+-.++..|++.|..+-.-+.|+.+|..|.+...+.+.+|+..|.+|+--. +++|..|-+ .+-|+.|+
T Consensus 247 ~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~-~~Gv~~l~ 325 (717)
T KOG1048|consen 247 PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKE-LNGVPTLV 325 (717)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhh-cCChHHHH
Confidence 346777777787777777888887778899999999999999999999999999998332 368988955 48999999
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhc----ccc-------------chhhhh--
Q 018602 273 TLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA----QRS-------------LCEKPW-- 333 (353)
Q Consensus 273 ~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~----~~~-------------~~E~aL-- 333 (353)
++|+.-.+....+...-+|+||+++. .=+..++ .-++..|...+... +.+ .+--+|
T Consensus 326 ~~Lr~t~D~ev~e~iTg~LWNLSS~D----~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRN 400 (717)
T KOG1048|consen 326 RLLRHTQDDEVRELITGILWNLSSND----ALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRN 400 (717)
T ss_pred HHHHhhcchHHHHHHHHHHhcccchh----HHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhcc
Confidence 99996446678888889999999874 3444444 34666666655311 111 122233
Q ss_pred c-cCCHHHHHHHhccCCcc
Q 018602 334 V-FSTDFAAVITGEERPTI 351 (353)
Q Consensus 334 L-~~~~eGR~ai~~~~~~i 351 (353)
+ +...|||+++.+..|.|
T Consensus 401 lSs~~~eaR~~mr~c~GLI 419 (717)
T KOG1048|consen 401 LSSAGQEAREQMRECDGLI 419 (717)
T ss_pred ccchhHHHHHHHhhccchH
Confidence 4 44889999999988865
No 32
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.079 Score=52.25 Aligned_cols=178 Identities=10% Similarity=0.167 Sum_probs=125.2
Q ss_pred CCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCC
Q 018602 143 SEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSA 222 (353)
Q Consensus 143 ~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~ 222 (353)
+.+++++..|+.+|..++..-+ |=.-+...|+...|+..+.+. +..+++.|..++...+.........+.+.
T Consensus 94 s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~-------~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENS-------DAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCC-------cHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 3577888999999999998766 667788888877777877655 46789999988877654455666667788
Q ss_pred CcHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchH-HHHHhhhhhchHHHHHHhhcCC-CChhHHHHHHHHHHHhhcCCC
Q 018602 223 SSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHR-RVNMFLEIEGAIESLYTLIKEP-ICPTATEASFVVVYHMITSAS 299 (353)
Q Consensus 223 ~~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Lss~~~~-~~~~IG~~~gai~~LV~lL~~~-~s~~a~k~Al~aL~nLc~~~~ 299 (353)
++++.|..+|.+. +..+|..|.-++.+|-.-... ..... ..+| +..|.+++.++ .+++.+..|+..+-.|....
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl-~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~- 242 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL-KLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQED- 242 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH-hcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-
Confidence 8999999999875 667778888888877643322 22222 4434 88899999864 57888888888888875433
Q ss_pred CCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 300 AADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 300 ~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
..++.-+-..|....+..+....+-..-|.++
T Consensus 243 --~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l 274 (342)
T KOG2160|consen 243 --KSDEDIASSLGFQRVLENLISSLDFEVNEAAL 274 (342)
T ss_pred --hhhhhHHHHhhhhHHHHHHhhccchhhhHHHH
Confidence 13444555567777777666544333334443
No 33
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.65 E-value=0.00018 Score=52.88 Aligned_cols=49 Identities=6% Similarity=-0.061 Sum_probs=28.8
Q ss_pred cccCCchhhhhhhhhhHHhhhccccch--hHHHHHh-HHHHh--hcCCcccccc
Q 018602 39 QLTMPGKRHVRLINLAKWLVESAWVAL--RLFQERC-EEELL--WAAEMIKIKA 87 (353)
Q Consensus 39 ~~~~~~~~~~~~c~l~~~~m~d~~~~~--~~~~eR~-~~e~~--~g~~tcP~T~ 87 (353)
|+.+.+...++.||||++.++|||.+. +.+|||- +.+++ .+...||+++
T Consensus 2 di~i~~~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 2 DIVIEGGTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -----SSB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ceEEeccEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 344555677788999999999999863 8888887 55677 5678899875
No 34
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.55 E-value=0.004 Score=62.40 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=68.5
Q ss_pred hhhhhhHHhhhccccch--hH-HHHHhHHHHhhcCCccccccccccCCceecCchhhhhhhhhhhhhhcccCCCCCCCCC
Q 018602 49 RLINLAKWLVESAWVAL--RL-FQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYAKLGIPM 125 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~--~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~i~~w~~~l~r~~~~g~~tp~~p~ 125 (353)
++|-|+.++=++|||++ +. |.+|+++.|...+++||+|+|+|.-.+++|=- ..++..|+||.
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik---------------~~~~v~pk~~s 65 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIK---------------VPAQVRPKPPS 65 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeecc---------------ccccccCCCCC
Confidence 47999999999999874 55 55566777999999999999999866665411 11223455542
Q ss_pred C------------------------hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHh
Q 018602 126 S------------------------SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVD 172 (353)
Q Consensus 126 ~------------------------~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~ 172 (353)
. +.++...-++|+-.- ...-.|.+=|.+|.||-++.|..+..
T Consensus 66 atSIPalL~~lQdEWDavML~~F~LRqqL~ttrQELShaL-----YqhDAAcrViaRL~kE~~eareaLa~ 131 (506)
T KOG0289|consen 66 ATSIPALLKTLQDEWDAVMLESFTLRQQLQTTRQELSHAL-----YQHDAACRVIARLTKERDEAREALAK 131 (506)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 122222333333221 12234677899999999999998865
No 35
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.045 Score=59.21 Aligned_cols=189 Identities=11% Similarity=0.111 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhh-hhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERN-KRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 205 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~n-R~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L 205 (353)
...+..|++.+.+. .|+..|++|+.++-.+..-..+. =.-+--.-++|+|+.+|+.. .|.++.-.|.++|
T Consensus 166 sSk~kkLL~gL~~~---~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E------~n~DIMl~AcRal 236 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAE---SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE------HNFDIMLLACRAL 236 (1051)
T ss_pred hHHHHHHHHhcccc---CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc------ccHHHHHHHHHHH
Confidence 34666777777553 37888999999988776544221 11122225799999999654 3678888888999
Q ss_pred HhcCCCChhHHhhccCCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHH
Q 018602 206 TLLFPLAGEALTYLGSASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTAT 284 (353)
Q Consensus 206 ~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~ 284 (353)
..|+.--.+.-..+++.++||.+..=|..= =++.-+++.-+|+.||.. ..+.++ ++ |++-+.+..|.== +.-+.
T Consensus 237 tyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL-~A-G~l~a~LsylDFF-Si~aQ 311 (1051)
T KOG0168|consen 237 TYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAIL-QA-GALSAVLSYLDFF-SIHAQ 311 (1051)
T ss_pred HHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHH-hc-ccHHHHHHHHHHH-HHHHH
Confidence 888632245556777889999988776553 345568899999999843 345566 76 8777777766321 44588
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 285 EASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 285 k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
+.|+.+.-|.|..-. .+-=..+++ +||.|-.+|...++...|-+.
T Consensus 312 R~AlaiaaN~Cksi~--sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ 356 (1051)
T KOG0168|consen 312 RVALAIAANCCKSIR--SDEFHFVME--ALPLLTPLLSYQDKKPIESVC 356 (1051)
T ss_pred HHHHHHHHHHHhcCC--CccchHHHH--HHHHHHHHHhhccchhHHHHH
Confidence 899999999996320 133344444 789999999877777777777
No 36
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.48 E-value=0.016 Score=44.62 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=64.9
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Q 018602 176 VSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH 255 (353)
Q Consensus 176 i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~ 255 (353)
||.|+..|.+. .+..++..|+.+|..+ . ++.+++.+++++++.+...|..|+..|-.+
T Consensus 1 i~~L~~~l~~~------~~~~vr~~a~~~L~~~---~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----- 58 (88)
T PF13646_consen 1 IPALLQLLQND------PDPQVRAEAARALGEL---G--------DPEAIPALIELLKDEDPMVRRAAARALGRI----- 58 (88)
T ss_dssp HHHHHHHHHTS------SSHHHHHHHHHHHHCC---T--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHhcC------CCHHHHHHHHHHHHHc---C--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-----
Confidence 57888888443 2467888988888854 1 225699999999999999999998888754
Q ss_pred HHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHH
Q 018602 256 RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVV 291 (353)
Q Consensus 256 ~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL 291 (353)
|. +.+++.|.+++.++.+......|..+|
T Consensus 59 ------~~-~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 59 ------GD-PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ------HH-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred ------CC-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 34 478999999998765555567777665
No 37
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.48 E-value=0.0043 Score=41.81 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=36.6
Q ss_pred hhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 018602 213 GEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 251 (353)
Q Consensus 213 ~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Ls 251 (353)
++++..+.+.|.++.|+.+|++++.+.+.+|+.+|.+|+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 578888889999999999999999999999999999996
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.36 E-value=0.027 Score=54.77 Aligned_cols=186 Identities=14% Similarity=0.131 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhChhhhhHHHhc---CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhcc------CC
Q 018602 152 LVAKIKKWIKESERNKRCIVDY---GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG------SA 222 (353)
Q Consensus 152 Al~~Lr~Lakes~~nR~~i~~a---G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~------~~ 222 (353)
-+..|+.+-+.+..+|.-+.+. +.+..++.+|.... .+.++.+.++..+.-|...+.+....+. .+
T Consensus 30 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~-----~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~ 104 (312)
T PF03224_consen 30 DLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLS-----SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDS 104 (312)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHHH--------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHcc-----CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 3445555555555555544443 46788888886651 1457788888888776554444333332 12
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCCh---hHHHHHHHHHHHhhcCCC
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICP---TATEASFVVVYHMITSAS 299 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~---~a~k~Al~aL~nLc~~~~ 299 (353)
.....+.++|.+++...+..|+.+|-.|....+...... . .++++.+++.+++..+. .....|+.+|-+|...+
T Consensus 105 ~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~- 181 (312)
T PF03224_consen 105 DPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-V-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK- 181 (312)
T ss_dssp --HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-H-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-H-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-
Confidence 368888889999999999999999999985543222211 1 37788888888753222 34478999999998886
Q ss_pred CCCchHHHHHHcCcHHHHHHHhh-----hc--cccchhhhh-----ccCCHHHHHHHhccC
Q 018602 300 AADKPIQKFVDMGLVSLLLETLV-----DA--QRSLCEKPW-----VFSTDFAAVITGEER 348 (353)
Q Consensus 300 ~~~~Nr~~~VeaGaV~~LlelL~-----~~--~~~~~E~aL-----L~~~~eGR~ai~~~~ 348 (353)
+.|..+++.|.|+.|..+|. +. +....-.++ |+=.+++...+..+.
T Consensus 182 ---~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~ 239 (312)
T PF03224_consen 182 ---EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY 239 (312)
T ss_dssp ---HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS
T ss_pred ---hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc
Confidence 89999999999999999992 11 111222222 666777877776655
No 39
>PF05536 Neurochondrin: Neurochondrin
Probab=96.26 E-value=0.086 Score=55.42 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHHHHhChh---hhhHHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhH---Hhhc
Q 018602 147 TGGRDLVAKIKKWIKESER---NKRCIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEA---LTYL 219 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~~---nR~~i~~a-G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~---k~~l 219 (353)
..+.-++-=+.++.+.++. +|+.+.++ | .++|-++|.++..+........+.-|+++|..++. +++. ++.+
T Consensus 20 ~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~-~~~~a~~~~~~ 97 (543)
T PF05536_consen 20 TERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR-DPELASSPQMV 97 (543)
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC-ChhhhcCHHHH
Confidence 4566788888888887764 33345566 7 49999999875422101123457889999998865 4332 2222
Q ss_pred cCCCcHHHHHHHHhcCCH-HHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 220 GSASSMHCMVWFLKSGDL-SRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 220 ~~~~~l~~Lv~~L~~gs~-~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
+.||.++.++.+++. +.-..|...|..+++. ++-...+.+. |.++.|++++.+ ++...+.|+.+|.+++...
T Consensus 98 ---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~-g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 98 ---SRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLES-GAVPALCEIIPN--QSFQMEIALNLLLNLLSRL 170 (543)
T ss_pred ---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhc-CCHHHHHHHHHh--CcchHHHHHHHHHHHHHhc
Confidence 479999999988866 8889999999999955 4444444476 999999999976 5678999999999997643
No 40
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.87 E-value=0.18 Score=50.62 Aligned_cols=173 Identities=13% Similarity=0.093 Sum_probs=116.2
Q ss_pred HHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHh
Q 018602 154 AKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLK 233 (353)
Q Consensus 154 ~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~ 233 (353)
..+-.+-++.+.-|.-+.-.-+.+-+..++-+. +.+++-.+++++..+.. +.+.-..+..-+.--.++..|.
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~-------~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~ 76 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD-------SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLD 76 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC-------cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhc
Confidence 345556666665555444434445554433222 25788888889876633 4454454444444445566665
Q ss_pred cC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc
Q 018602 234 SG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM 311 (353)
Q Consensus 234 ~g--s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea 311 (353)
.. ...+|++|..++..+...... ...+ . .|++..+|.+..+. +.+.+..|+.+|..++.. |-.-++++
T Consensus 77 ~~~~~~~ER~QALkliR~~l~~~~~-~~~~-~-~~vvralvaiae~~-~D~lr~~cletL~El~l~------~P~lv~~~ 146 (371)
T PF14664_consen 77 RDNKNDVEREQALKLIRAFLEIKKG-PKEI-P-RGVVRALVAIAEHE-DDRLRRICLETLCELALL------NPELVAEC 146 (371)
T ss_pred ccCCChHHHHHHHHHHHHHHHhcCC-cccC-C-HHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhh------CHHHHHHc
Confidence 54 567999999999998755222 2233 3 48999999998775 568999999999999984 78888999
Q ss_pred CcHHHHHHHhhhccccchhhhh-----ccCCHHHHHHH
Q 018602 312 GLVSLLLETLVDAQRSLCEKPW-----VFSTDFAAVIT 344 (353)
Q Consensus 312 GaV~~LlelL~~~~~~~~E~aL-----L~~~~eGR~ai 344 (353)
|.+.+|++.+.|+.-...|-.+ +..++.-|.=+
T Consensus 147 gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 147 GGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred CCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh
Confidence 9999999999986434555544 66666666543
No 41
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.27 Score=48.56 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHh
Q 018602 195 VSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTL 274 (353)
Q Consensus 195 ~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~l 274 (353)
.+-++.|+.-|..+. .+-+|-.-+.+-|.+..+...|++++...|+.|+.+|-+.+.-.+...+.+-+. |++..|..+
T Consensus 97 le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~-~~L~~Ll~~ 174 (342)
T KOG2160|consen 97 LEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL-GALSKLLKI 174 (342)
T ss_pred HHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc-ccHHHHHHH
Confidence 344667776665542 223344445566777888889999999999999999999987767656555465 899999999
Q ss_pred hcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhc--cccchhhhh
Q 018602 275 IKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA--QRSLCEKPW 333 (353)
Q Consensus 275 L~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~--~~~~~E~aL 333 (353)
+....+-.++..|+.|+++|.-+. ..-..++-.++....|...|.+. +...--|++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~---~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~ 232 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNN---KPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKAL 232 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcC---cHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHH
Confidence 986545567688999999887754 35778888888899999999763 334444444
No 42
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.14 Score=55.08 Aligned_cols=141 Identities=18% Similarity=0.264 Sum_probs=109.8
Q ss_pred HhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhHHhh-ccCCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 018602 171 VDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEALTY-LGSASSMHCMVWFLKSGDLSRRRNTVLVLR 248 (353)
Q Consensus 171 ~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~-~~~e~k~~-l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~ 248 (353)
..-|.|..|+.++... +..|+--++..|..|.. -..+.+.. +..|..|..++.+|.-..-..|-.|+.+|.
T Consensus 119 k~qd~I~lll~~~e~~-------DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~ 191 (970)
T KOG0946|consen 119 KNQDNITLLLQSLEEF-------DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLS 191 (970)
T ss_pred cCchhHHHHHHHHHhh-------chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHH
Confidence 3448899999999765 35677777777765532 23556664 568999999999998887778899999999
Q ss_pred HHhccchHHHHHhhhhhchHHHHHHhhcCCCC---hhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhh
Q 018602 249 EVISSDHRRVNMFLEIEGAIESLYTLIKEPIC---PTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 322 (353)
Q Consensus 249 ~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s---~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~ 322 (353)
+|+........++ .-+.+++-|..+++++.. .-.+.+++..|.||-..+ -.|---+-|.|.|+.|.++|+
T Consensus 192 eL~k~n~~IQKlV-AFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N---~SNQ~~FrE~~~i~rL~klL~ 264 (970)
T KOG0946|consen 192 ELVKDNSSIQKLV-AFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN---ISNQNFFREGSYIPRLLKLLS 264 (970)
T ss_pred HHHccCchHHHHH-HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC---cchhhHHhccccHHHHHhhcC
Confidence 9986656555666 445899999999985422 256899999999998765 368899999999999999996
No 43
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.021 Score=53.71 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=51.9
Q ss_pred ccccCCchhhhhhhhhhHHhhhcccc-chhHHHHHhHHH-Hhhc-CCccccccccccCCceecCchhh--hhhhhh
Q 018602 38 LQLTMPGKRHVRLINLAKWLVESAWV-ALRLFQERCEEE-LLWA-AEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 38 ~~~~~~~~~~~~~c~l~~~~m~d~~~-~~~~~~eR~~~e-~~~g-~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
.+.++|. |.. |.|+.++|+||++ +.+.+|+|.+|+ .+.. -..=|+|.-+|..-.++||.+|+ |..+..
T Consensus 204 k~rEvpd-~lc--gkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~ 276 (284)
T KOG4642|consen 204 KKREVPD-YLC--GKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLK 276 (284)
T ss_pred ccccccc-hhh--hhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHH
Confidence 4555554 443 8999999999986 559999999665 4542 23469999999989999999999 765543
No 44
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.98 E-value=0.18 Score=46.15 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=90.4
Q ss_pred CCChhhHHHHHHHHHHHHHhC--hhhhhHHHhc--CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhh
Q 018602 143 SEDQTGGRDLVAKIKKWIKES--ERNKRCIVDY--GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTY 218 (353)
Q Consensus 143 ~~d~~~~~~Al~~Lr~Lakes--~~nR~~i~~a--G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~ 218 (353)
+.+...+.+|+.+|+.+.+.+ ..+...+.+. .++..+...+.+. ...+...|+.++..|+. ..+.-
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-------Rs~v~~~A~~~l~~l~~---~l~~~ 87 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-------RSKVSKTACQLLSDLAR---QLGSH 87 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----------HHHHHHHHHHHHHH---HHGGG
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-------HHHHHHHHHHHHHHHHH---HHhHh
Confidence 346688899999999999988 3333333332 4455555555433 34567777777766632 22222
Q ss_pred cc--CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhch-HHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 018602 219 LG--SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGA-IESLYTLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 219 l~--~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~ga-i~~LV~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
+. -...++.|++.+.++....|..|..+|..+..... . . +.+ +..+.....+. +|+.+..++..|..+.
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~-~-~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----Y-S-PKILLEILSQGLKSK-NPQVREECAEWLAIIL 159 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H----HHHHHHHHHHTT-S--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----c-H-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 22 24478899998888888899999999998863311 0 1 134 45555556555 8999999999999986
Q ss_pred cCCCCCCchHHHHHH----cCcHHHHHHHhhhcccc
Q 018602 296 TSASAADKPIQKFVD----MGLVSLLLETLVDAQRS 327 (353)
Q Consensus 296 ~~~~~~~~Nr~~~Ve----aGaV~~LlelL~~~~~~ 327 (353)
... +.+...+-. ..+++.+.+.+.|++..
T Consensus 160 ~~~---~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 160 EKW---GSDSSVLQKSAFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp TT--------GGG--HHHHHHHHHHHHHHHTSS-HH
T ss_pred HHc---cchHhhhcccchHHHHHHHHHHHCCCCCHH
Confidence 643 111111111 23667777777776533
No 45
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.87 E-value=0.058 Score=35.39 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=32.4
Q ss_pred HHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 018602 256 RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 256 ~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
+++..+... |+++.|+++++.+ ++..++.|..+|.||+
T Consensus 3 ~~~~~i~~~-g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDA-GGLPALVELLKSE-DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHC-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 356667565 9999999999866 8899999999999996
No 46
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.83 E-value=0.052 Score=35.61 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=34.7
Q ss_pred hHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 018602 214 EALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 251 (353)
Q Consensus 214 e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Ls 251 (353)
+++..+.+.|.++.++.+|++++.+.+.+|+.+|.+|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47777888999999999999999999999999999986
No 47
>PF05536 Neurochondrin: Neurochondrin
Probab=94.66 E-value=0.35 Score=50.87 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=74.4
Q ss_pred HHHHHHHhcC-------CHHHHHHHHHHHHHHhccchHH---HHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 018602 226 HCMVWFLKSG-------DLSRRRNTVLVLREVISSDHRR---VNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 226 ~~Lv~~L~~g-------s~~~R~~Aa~lL~~Lss~~~~~---~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
+.+-++|+.| ...-+.-|+++|..++.. ++. ..++ +-||.|++++..+.+...+.+|+.+|++++
T Consensus 53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~-~~~a~~~~~~----~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia 127 (543)
T PF05536_consen 53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD-PELASSPQMV----SRIPLLLEILSSSSDLETVDDALQCLLAIA 127 (543)
T ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC-hhhhcCHHHH----HHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 4444555563 245566789999988853 432 4444 568999999987744589999999999999
Q ss_pred cCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 296 TSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 296 ~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
.++ +.+..+++.|+|+.|.+.+.+ .....|.++
T Consensus 128 s~~----~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 128 SSP----EGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred cCc----HhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 886 899999999999999999987 334566666
No 48
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=94.50 E-value=0.77 Score=40.01 Aligned_cols=112 Identities=11% Similarity=0.143 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 018602 128 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 207 (353)
Q Consensus 128 ~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~ 207 (353)
+-+..||.+..... +.+.+.+.+..|..+|=+ +.|=..+.+..+....++.|... |..+.|.+++.|+|
T Consensus 16 ~Ylq~LV~efq~tt---~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~-------ne~LvefgIgglCN 84 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTT---NIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQ-------NELLVEFGIGGLCN 84 (173)
T ss_pred HHHHHHHHHHHHhc---cHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcc-------cHHHHHHhHHHHHh
Confidence 45667777774432 445566788888888874 67888999998888888888654 56788999999999
Q ss_pred cCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 018602 208 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 251 (353)
Q Consensus 208 L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Ls 251 (353)
++ .|..|++-|.+.+.++.++.+|.+..-.+-..|+..|.-|+
T Consensus 85 lC-~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 85 LC-LDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred hc-cChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 96 47889999999999999999998887777778888888775
No 49
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.49 E-value=1.8 Score=41.12 Aligned_cols=147 Identities=12% Similarity=0.146 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC-CCChhHHhhccCCCcHH
Q 018602 148 GGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF-PLAGEALTYLGSASSMH 226 (353)
Q Consensus 148 ~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~-~~~~e~k~~l~~~~~l~ 226 (353)
....|+.-++-++.+- +-|+.+..+-+--.|-.+|...+.+ .....++-.+|+++..|. +.|.+--+-+.+.+.+|
T Consensus 95 RVcnaL~LlQcvASHp-dTr~~FL~A~iPlylYpfL~Tt~~~--r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 95 RVCNALALLQCVASHP-DTRRAFLRAHIPLYLYPFLNTTSKS--RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred hHHHHHHHHHHHhcCc-chHHHHHHccChhhhHHhhhccccC--CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3455777777777754 4688888888777777777654321 123456677888776554 34445444566889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccch------HHHHHhhhhhchHHHHH-HhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 227 CMVWFLKSGDLSRRRNTVLVLREVISSDH------RRVNMFLEIEGAIESLY-TLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 227 ~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~------~~~~~IG~~~gai~~LV-~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
..++++.+|+-.+|.-|+-++..+...+. ..-+......-.+..+| ++.+.+ +++..|.++++..+||..+
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999998874422 11122212212334444 334444 9999999999999999875
No 50
>PRK09687 putative lyase; Provisional
Probab=94.42 E-value=0.6 Score=44.92 Aligned_cols=78 Identities=10% Similarity=0.126 Sum_probs=39.9
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCC
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 302 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~ 302 (353)
..++.|+.+|+..+...|..|+..|=.+. . ..+.+++.|+.+|.+. ++...+.|..+|-.+-.
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~---------~~~~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~------ 221 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSNK-Y---------DNPDIREAFVAMLQDK-NEEIRIEAIIGLALRKD------ 221 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcCC-C---------CCHHHHHHHHHHhcCC-ChHHHHHHHHHHHccCC------
Confidence 34555555555555555555544444331 0 1235566666666555 44555555555533211
Q ss_pred chHHHHHHcCcHHHHHHHhhhcc
Q 018602 303 KPIQKFVDMGLVSLLLETLVDAQ 325 (353)
Q Consensus 303 ~Nr~~~VeaGaV~~LlelL~~~~ 325 (353)
.-+|++|++.|.+..
T Consensus 222 --------~~av~~Li~~L~~~~ 236 (280)
T PRK09687 222 --------KRVLSVLIKELKKGT 236 (280)
T ss_pred --------hhHHHHHHHHHcCCc
Confidence 026788888886543
No 51
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=94.15 E-value=0.24 Score=43.09 Aligned_cols=101 Identities=9% Similarity=0.047 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 018602 194 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 273 (353)
Q Consensus 194 ~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~ 273 (353)
+.+.+|.+++-|.|+ ..|.-|-..+..-++++..+..|...+-.-.+.++.-|.+++ .+..+++.|-.. +-++-.+.
T Consensus 30 ~~eakeqv~ANLANF-AYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC-~d~~n~~~I~ea-~g~plii~ 106 (173)
T KOG4646|consen 30 NIEAKEQVTANLANF-AYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC-LDKTNAKFIREA-LGLPLIIF 106 (173)
T ss_pred cHHHHHHHHHHHHhh-ccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc-cChHHHHHHHHh-cCCceEEe
Confidence 567899999999997 467778888888899999999999888888899999999998 446777778555 67777777
Q ss_pred hhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 274 LIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 274 lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
.+.++ .-.....|+.+|+.||...
T Consensus 107 ~lssp-~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 107 VLSSP-PEITVHSAALFLQLLEFGE 130 (173)
T ss_pred ecCCC-hHHHHHHHHHHHHHhcCcc
Confidence 77665 4467788999999999864
No 52
>PRK09687 putative lyase; Provisional
Probab=93.57 E-value=1.1 Score=43.04 Aligned_cols=83 Identities=12% Similarity=0.078 Sum_probs=56.9
Q ss_pred CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCC
Q 018602 221 SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASA 300 (353)
Q Consensus 221 ~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~ 300 (353)
++..++.|+..|...+.+.|..|+..|-.+ |. +.+++.|++.|+++ ++ ...|..+|-++-..
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~-----------~~-~~av~~Li~~L~~~-~~--~~~a~~ALg~ig~~--- 251 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLALR-----------KD-KRVLSVLIKELKKG-TV--GDLIIEAAGELGDK--- 251 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHcc-----------CC-hhHHHHHHHHHcCC-ch--HHHHHHHHHhcCCH---
Confidence 345788899999888888898888777543 23 37899999999876 43 34455665555331
Q ss_pred CCchHHHHHHcCcHHHHHHHhh-hccccchhhh
Q 018602 301 ADKPIQKFVDMGLVSLLLETLV-DAQRSLCEKP 332 (353)
Q Consensus 301 ~~~Nr~~~VeaGaV~~LlelL~-~~~~~~~E~a 332 (353)
-+|+.|.+++. +.+..+.-++
T Consensus 252 -----------~a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 252 -----------TLLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred -----------hHHHHHHHHHhhCCChhHHHHH
Confidence 27888998886 4454454444
No 53
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.32 E-value=3.2 Score=39.65 Aligned_cols=154 Identities=8% Similarity=0.065 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC-CCChhHHhhccCCCcHH
Q 018602 148 GGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF-PLAGEALTYLGSASSMH 226 (353)
Q Consensus 148 ~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~-~~~~e~k~~l~~~~~l~ 226 (353)
....|+.=+..+|. +++-|..+.++.+.-.|-.+|...... .....++-.+|+++..|. ..+.+.-..+.+.+.+|
T Consensus 66 RVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~--r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiip 142 (262)
T PF04078_consen 66 RVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKT--RPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIP 142 (262)
T ss_dssp HHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----S--HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccc--cccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHH
Confidence 34568888888888 566899999999888888888655321 012334555666665443 23344445566889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhh-------cCCCChhHHHHHHHHHHHhhcCCC
Q 018602 227 CMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLI-------KEPICPTATEASFVVVYHMITSAS 299 (353)
Q Consensus 227 ~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL-------~~~~s~~a~k~Al~aL~nLc~~~~ 299 (353)
...+.+..|+--+|.-|+-++..+... +.-..-+....+=+..+..+| .+..+|+..|....+-..||..+
T Consensus 143 lcLr~me~GselSKtvAtfIlqKIL~d-d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp- 220 (262)
T PF04078_consen 143 LCLRIMEFGSELSKTVATFILQKILLD-DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP- 220 (262)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHcc-hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-
Confidence 999999999999999999999998744 433333333333333333222 23339999999999999999986
Q ss_pred CCCchHHHHH
Q 018602 300 AADKPIQKFV 309 (353)
Q Consensus 300 ~~~~Nr~~~V 309 (353)
++|..+-
T Consensus 221 ---rar~aL~ 227 (262)
T PF04078_consen 221 ---RAREALR 227 (262)
T ss_dssp ---THHHHHH
T ss_pred ---HHHHHHH
Confidence 6665543
No 54
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=93.05 E-value=0.89 Score=46.69 Aligned_cols=125 Identities=13% Similarity=-0.008 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHhccchH-HHHHhhhhhc
Q 018602 193 EHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG-----DLSRRRNTVLVLREVISSDHR-RVNMFLEIEG 266 (353)
Q Consensus 193 ~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~g-----s~~~R~~Aa~lL~~Lss~~~~-~~~~IG~~~g 266 (353)
.+..+..+|+..|+|+...+...+....+.+..+.++..|++. +.+..--..++||=++....+ .+..+ ...+
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~-~e~~ 122 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLI-EEHH 122 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHH-HHhh
Confidence 3567899999999998767788888888889999999999998 678888999999977755443 33444 4335
Q ss_pred hHHHHHHhhc----C---C---------CChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhh
Q 018602 267 AIESLYTLIK----E---P---------ICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 322 (353)
Q Consensus 267 ai~~LV~lL~----~---~---------~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~ 322 (353)
.+..++..|. . . .+..+.-.+++++||+..+. .....--..+.++.|+.+|.
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~----~~~~~~~~~~~~~~l~~il~ 190 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY----PKSVPEEFSPSIPHLVSILR 190 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc----CcccchhhhHHHHHHHHHHH
Confidence 5565555442 1 1 13456788999999996543 11111233445555555543
No 55
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.92 E-value=3.2 Score=42.47 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 018602 196 SVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 273 (353)
Q Consensus 196 ~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~g--s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~ 273 (353)
..+.-++..|..|.. .++.|..+.+.+.++.|+.+|++. ..+..-++...+--|| ..+...+.. ...++|+.|++
T Consensus 159 ~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~-~~~~~i~~l~~ 235 (429)
T cd00256 159 DYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLT-FNPHAAEVL-KRLSLIQDLSD 235 (429)
T ss_pred chHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHh-ccHHHHHhh-ccccHHHHHHH
Confidence 456666777765522 466777776666899999999874 3455566777777665 555555555 34599999999
Q ss_pred hhcCCCChhHHHHHHHHHHHhhcCCCC---CCchHHHHHHcCcHHHHHHHh
Q 018602 274 LIKEPICPTATEASFVVVYHMITSASA---ADKPIQKFVDMGLVSLLLETL 321 (353)
Q Consensus 274 lL~~~~s~~a~k~Al~aL~nLc~~~~~---~~~Nr~~~VeaGaV~~LlelL 321 (353)
+++...--+.++-++.+|.|+...... ++.....||..|..+.+-.+.
T Consensus 236 i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 236 ILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence 998765568899999999999764211 122457788888866554443
No 56
>KOG1874 consensus KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4 [Transcription]
Probab=92.84 E-value=0.13 Score=57.51 Aligned_cols=53 Identities=42% Similarity=0.516 Sum_probs=41.8
Q ss_pred hccccchhHHHHHhHHHHhhcCCccccccccccCCceecCchhhhhhhhhhhhhhcccCCC
Q 018602 59 ESAWVALRLFQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYA 119 (353)
Q Consensus 59 ~d~~~~~~~~~eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~i~~w~~~l~r~~~~g~~ 119 (353)
++..|++.-++||+..|.+.-...- .+.++-|+.|+|+|-+|||||++++||+
T Consensus 21 ~~~~ise~~L~e~l~~e~~k~~~~~--------k~~vrl~tkl~ykq~KfNLlrEeseGYa 73 (1477)
T KOG1874|consen 21 STVTISEEKLIERLHEELFKFDWIS--------KKLVRLKTKLKYKQKKFNLLREESEGYA 73 (1477)
T ss_pred hcccchHHHhHhhhhHHHHHhhhhh--------hHHHHHHHHHHHHHHHhhHHHHhcccHH
Confidence 3556788889999988865432221 1278999999999999999999999996
No 57
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.25 Score=53.71 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcH
Q 018602 236 DLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLV 314 (353)
Q Consensus 236 s~~~R~~Aa~lL~~Lss~~-~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV 314 (353)
+...+..|+.=|.++.+.. ++....+ -.+-+++.||.+|+.+..+.-+..|.+||++||..- .+-..-+|+.|+|
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~f-pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl---P~S~a~vV~~~aI 256 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGF-PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL---PRSSAIVVDEHAI 256 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc---cchhheeecccch
Confidence 3333444444444433232 3333344 345799999999998888999999999999999643 2789999999999
Q ss_pred HHHHHHhhhccc-cchhhhh
Q 018602 315 SLLLETLVDAQR-SLCEKPW 333 (353)
Q Consensus 315 ~~LlelL~~~~~-~~~E~aL 333 (353)
|+|++.|..-+- .++|.+|
T Consensus 257 Pvl~~kL~~IeyiDvAEQ~L 276 (1051)
T KOG0168|consen 257 PVLLEKLLTIEYIDVAEQSL 276 (1051)
T ss_pred HHHHHhhhhhhhhHHHHHHH
Confidence 999999975432 4778777
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=92.48 E-value=0.53 Score=48.39 Aligned_cols=122 Identities=13% Similarity=0.190 Sum_probs=83.3
Q ss_pred ccCCCcHHHHHHHHhcCCHHH--HHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 219 LGSASSMHCMVWFLKSGDLSR--RRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 219 l~~~~~l~~Lv~~L~~gs~~~--R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
|...|.++.+++++...+.++ |..|+.+|+++. + .++.+.|.+. | ...++.+-++...+...+..+..|-|+-.
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~-aeN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-V-AENRDRVARI-G-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-h-hhhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 334578999999999987776 999999999986 2 3445555443 3 33333443545567788889999999987
Q ss_pred CCCCCCchHHHHHHcCcHHHHHHHhhhccc---cchhhhh----ccCCHHHHHHHhcc
Q 018602 297 SASAADKPIQKFVDMGLVSLLLETLVDAQR---SLCEKPW----VFSTDFAAVITGEE 347 (353)
Q Consensus 297 ~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~---~~~E~aL----L~~~~eGR~ai~~~ 347 (353)
+. ++...++|++|.++.++---...+. .-|-.|| |-+|.+|...|...
T Consensus 252 HS---eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK 306 (832)
T KOG3678|consen 252 HS---EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEK 306 (832)
T ss_pred hh---HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh
Confidence 75 4688999999998877643322222 2234444 66777777777643
No 59
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=92.16 E-value=2.3 Score=45.26 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHH
Q 018602 151 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVW 230 (353)
Q Consensus 151 ~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~ 230 (353)
.|+--++.+++.=..-|.-+..+.++..|++++..+ ...+.--++++|.||.-.-...|.-+.+.+.|+-+..
T Consensus 396 aa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-------~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 396 AALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-------EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred HHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-------chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 344445555544334444456667888899998433 2356778899999984322445777778899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHhccchH-HHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 231 FLKSGDLSRRRNTVLVLREVISSDHR-RVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 231 ~L~~gs~~~R~~Aa~lL~~Lss~~~~-~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
++..-+...|.++.-+|+.++--+++ .+... -..=....++.+.+++ ++...+-++..|.||..
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~-~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQL-LAKIPANLILDLINDP-DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHH-HHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhc
Confidence 99999999999999999999844332 22111 1112335566777776 88889999999999944
No 60
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=0.1 Score=57.47 Aligned_cols=65 Identities=18% Similarity=0.067 Sum_probs=54.4
Q ss_pred cCCchhhhhhhhhhHHhhhcccc-c-hhHHHHHhHHH-HhhcCCccccccccccCCceecCchhh--hhhhhh
Q 018602 41 TMPGKRHVRLINLAKWLVESAWV-A-LRLFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 41 ~~~~~~~~~~c~l~~~~m~d~~~-~-~~~~~eR~~~e-~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
++|.+|. =|+.-.+|.|||+ | .+.+..|..++ .+-.-.|=|.-+++|....++||..|+ |+.|..
T Consensus 866 dvpdef~---DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ 935 (943)
T KOG2042|consen 866 DVPDEFL---DPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIK 935 (943)
T ss_pred cCchhhh---CccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHH
Confidence 4888888 7999999999997 4 47788888666 355566678888999999999999999 999975
No 61
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=90.94 E-value=6.8 Score=40.15 Aligned_cols=139 Identities=8% Similarity=0.034 Sum_probs=94.1
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhc-----cCCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 018602 174 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYL-----GSASSMHCMVWFLKSGDLSRRRNTVLVLR 248 (353)
Q Consensus 174 G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l-----~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~ 248 (353)
..+..++.+|.... +.++.+-++..+.-|...++..-..+ ..++....++.+|.+++.-....|..+|-
T Consensus 53 ~y~~~~l~ll~~~~------~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt 126 (429)
T cd00256 53 QYVKTFVNLLSQID------KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA 126 (429)
T ss_pred HHHHHHHHHHhccC------cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence 46778888886543 34677777777766544332222222 23677788888998888888888888888
Q ss_pred HHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhh
Q 018602 249 EVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD 323 (353)
Q Consensus 249 ~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~ 323 (353)
.|.+......... ..+-++.-|...++.+.+.....-|+.+|..|...+ +-|.-+++.+.|+.|+++|..
T Consensus 127 ~l~~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~----~~R~~f~~~~~v~~L~~~L~~ 196 (429)
T cd00256 127 KLACFGLAKMEGS-DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD----EYRFAFVLADGVPTLVKLLSN 196 (429)
T ss_pred HHHhcCccccchh-HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc----hHHHHHHHccCHHHHHHHHhh
Confidence 8864432111100 111244456666665545678888999999998886 799999999999999999964
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=4.1 Score=45.93 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhChhhhhHHHhc----CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHH
Q 018602 151 DLVAKIKKWIKESERNKRCIVDY----GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMH 226 (353)
Q Consensus 151 ~Al~~Lr~Lakes~~nR~~i~~a----G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~ 226 (353)
-++..|+.+.+.++.--..+++. |..+.+...+.... +.+++.-+|.++..+ ....+.-+-|++.+++.
T Consensus 1744 m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~------~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1744 MTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRK------HPKLQILALQVILLA-TANKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcC------CchHHHHHHHHHHHH-hcccHHHHHHHhhhHHH
Confidence 47888899988887544444432 77788888887664 356888888888765 32345556677888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 018602 227 CMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 227 ~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
.+..+|.+ -+..|+-+.-+|+.|++...-.++.+ .. |++..+..++-...++|-.-.|...|-.|.
T Consensus 1817 ~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~-~h-g~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1817 TLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL-EH-GGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH-hc-CchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 99998854 45678999999999997755566666 54 888888889877778887777777777774
No 63
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.39 E-value=4.7 Score=44.06 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=74.6
Q ss_pred chhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHH
Q 018602 192 DEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESL 271 (353)
Q Consensus 192 ~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~L 271 (353)
+.|+.++--|++.|..|. + ++++ +..++++.+.+.+++...|.+|+..+.++=..+.+.+. +. |.+..+
T Consensus 103 d~N~~iR~~AlR~ls~l~--~---~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~---~~-g~~~~l 171 (757)
T COG5096 103 DPNEEIRGFALRTLSLLR--V---KELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYH---EL-GLIDIL 171 (757)
T ss_pred CCCHHHHHHHHHHHHhcC--h---HHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhh---cc-cHHHHH
Confidence 357899999999999872 1 2222 23689999999999999999999999999756554443 32 788999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 272 YTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 272 V~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
..++.+. +|..+..|+.+|+.++.
T Consensus 172 ~~l~~D~-dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 172 KELVADS-DPIVIANALASLAEIDP 195 (757)
T ss_pred HHHhhCC-CchHHHHHHHHHHHhch
Confidence 9999887 99999999999999976
No 64
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=90.09 E-value=5.1 Score=44.73 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=59.8
Q ss_pred HHHHhChhhhhHHHhc------CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-------C-C--hhHHh----
Q 018602 158 KWIKESERNKRCIVDY------GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-------L-A--GEALT---- 217 (353)
Q Consensus 158 ~Lakes~~nR~~i~~a------G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~-------~-~--~e~k~---- 217 (353)
.|...++.-|....++ |-.+.|+..|... +..++..|+.+|..+-. + | .+-+.
T Consensus 692 ~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~-------d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~ 764 (897)
T PRK13800 692 HLGSPDPVVRAAALDVLRALRAGDAALFAAALGDP-------DHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAK 764 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCC-------CHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHH
Confidence 3444455566554332 3456666666433 46788888888765410 0 1 11111
Q ss_pred hc---cC--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHH
Q 018602 218 YL---GS--ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVY 292 (353)
Q Consensus 218 ~l---~~--~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~ 292 (353)
.| .+ +..++.|..+++..+...|..|+..|-.+. ..+.++..|+..|+++ ++.....|+.+|-
T Consensus 765 aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g-----------~~~~~~~~l~~aL~d~-d~~VR~~Aa~aL~ 832 (897)
T PRK13800 765 GLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELG-----------CPPDDVAAATAALRAS-AWQVRQGAARALA 832 (897)
T ss_pred HHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcC-----------CcchhHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 11 11 123567777777777777777766665442 1111223444555544 4555555555554
Q ss_pred Hh
Q 018602 293 HM 294 (353)
Q Consensus 293 nL 294 (353)
.+
T Consensus 833 ~l 834 (897)
T PRK13800 833 GA 834 (897)
T ss_pred hc
Confidence 44
No 65
>PTZ00429 beta-adaptin; Provisional
Probab=90.02 E-value=13 Score=40.80 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHH
Q 018602 193 EHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLY 272 (353)
Q Consensus 193 ~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV 272 (353)
.|+.++-.||++|..+.. .+.- +-.++.+.+.|...++..|..|+..+..+-..+++ .+ ...|+++.|.
T Consensus 117 ~Np~IRaLALRtLs~Ir~--~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv-~~~~~~~~L~ 185 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRV--SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LF-YQQDFKKDLV 185 (746)
T ss_pred CCHHHHHHHHHHHHcCCc--HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cc-cccchHHHHH
Confidence 356667777777766521 1111 11456667777778999999999999998654443 33 3348899999
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 273 TLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 273 ~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
++|.+. +|..+-.|+.+|+.++..
T Consensus 186 ~LL~D~-dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 186 ELLNDN-NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHhcCC-CccHHHHHHHHHHHHHHh
Confidence 999877 899999999999999865
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=89.83 E-value=1.2 Score=34.03 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=55.5
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 225 MHCMVWFL-KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 225 l~~Lv~~L-~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
|+.|++.| ++.+...|..|+.+|-++ |. +.+++.|+.+++++ ++..+..|..+|-.+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-----------~~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-----------GD-PEAIPALIELLKDE-DPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-----------TH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CC-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-------
Confidence 57888888 777999999988887733 22 27799999999776 88888888888886621
Q ss_pred hHHHHHHcCcHHHHHHHhhhc
Q 018602 304 PIQKFVDMGLVSLLLETLVDA 324 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~ 324 (353)
..+++.|.+++.+.
T Consensus 61 -------~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 61 -------PEAIPALIKLLQDD 74 (88)
T ss_dssp -------HHTHHHHHHHHTC-
T ss_pred -------HHHHHHHHHHHcCC
Confidence 22788888888654
No 67
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=7.8 Score=43.68 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=111.2
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChh-HHhhccCC
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGE-ALTYLGSA 222 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~-~~~e-~k~~l~~~ 222 (353)
+...+..++..|...+..+.+ .|.. -+|-++..+-++-. +.++.|+--|+-++--++. +..+ .|.- ..
T Consensus 361 ~w~~R~AaL~Als~i~EGc~~---~m~~--~l~~Il~~Vl~~l~---DphprVr~AA~naigQ~stdl~p~iqk~~--~e 430 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAEGCSD---VMIG--NLPKILPIVLNGLN---DPHPRVRYAALNAIGQMSTDLQPEIQKKH--HE 430 (1075)
T ss_pred CHHHHHHHHHHHHHHHcccHH---HHHH--HHHHHHHHHHhhcC---CCCHHHHHHHHHHHHhhhhhhcHHHHHHH--HH
Confidence 456667788888877776653 3333 34444444333211 2368899888888887742 1122 1111 23
Q ss_pred CcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchHHHHHhh-hhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCC
Q 018602 223 SSMHCMVWFLKS-GDLSRRRNTVLVLREVISSDHRRVNMFL-EIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASA 300 (353)
Q Consensus 223 ~~l~~Lv~~L~~-gs~~~R~~Aa~lL~~Lss~~~~~~~~IG-~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~ 300 (353)
..++.++..+.+ ++.....+|++.+.+.+... -+..|+ --++++..++.+|..+..+...+.++.++-.....-
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~--~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA-- 506 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEEC--DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA-- 506 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH--
Confidence 356788888876 47889999999999997332 234443 334566656666666658899999999998886642
Q ss_pred CCchHHHHHH--cCcHHHHHHHhhhcc-------ccchhhhh-ccCCHHHHHHHhccC
Q 018602 301 ADKPIQKFVD--MGLVSLLLETLVDAQ-------RSLCEKPW-VFSTDFAAVITGEER 348 (353)
Q Consensus 301 ~~~Nr~~~Ve--aGaV~~LlelL~~~~-------~~~~E~aL-L~~~~eGR~ai~~~~ 348 (353)
-..++. .-.++-|.+.|.+++ ++-+..++ +-+.+=||+++..++
T Consensus 507 ----~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 507 ----QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred ----hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 223332 124455555554332 23334444 555667888776654
No 68
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=88.60 E-value=0.28 Score=51.73 Aligned_cols=65 Identities=14% Similarity=0.028 Sum_probs=52.7
Q ss_pred ccCCchhhhhhhhhhHHhhhccccc--hhHHHHHhHHH-HhhcCCccccccccccCCceecCchhh--hhhhh
Q 018602 40 LTMPGKRHVRLINLAKWLVESAWVA--LRLFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTK 107 (353)
Q Consensus 40 ~~~~~~~~~~~c~l~~~~m~d~~~~--~~~~~eR~~~e-~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~ 107 (353)
..+|.+|. =||.=.+|+|||+. ++.+..|.-+. .+-..+|=|..+.||.-.+++||-.|| |.-+.
T Consensus 849 GDvPDeFl---DPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~ 918 (929)
T COG5113 849 GDVPDEFL---DPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFY 918 (929)
T ss_pred cCCchhhh---CchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHH
Confidence 34777776 79999999999974 47789998555 566778899998999999999999999 55443
No 69
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=88.22 E-value=6.9 Score=40.04 Aligned_cols=186 Identities=8% Similarity=0.060 Sum_probs=101.9
Q ss_pred HhhcCCccccccccccCCceecCchhh---hhhhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHhccCCCChhhHHHH
Q 018602 76 LLWAAEMIKIKAQDLKGKEVKVNTSLL---YQQTKFNLQREKSEGYAKLGIPMSSVEVLEINSKITAACKSEDQTGGRDL 152 (353)
Q Consensus 76 ~~~g~~tcP~T~q~l~~~~l~pN~~L~---i~~w~~~l~r~~~~g~~tp~~p~~~~~v~~ll~~l~s~~~~~d~~~~~~A 152 (353)
...|+.+-..-++...-.. ..|+.+| |--|.. + -++... ...--+..+.+++.+ .++..+.-|
T Consensus 34 ~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~-~-~~~~~~-------~~~l~~n~l~kdl~~----~n~~~~~lA 99 (526)
T PF01602_consen 34 MMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSL-Y-LHEDPE-------LLILIINSLQKDLNS----PNPYIRGLA 99 (526)
T ss_dssp HHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHH-H-TTTSHH-------HHHHHHHHHHHHHCS----SSHHHHHHH
T ss_pred HHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHH-H-hhcchh-------HHHHHHHHHHHhhcC----CCHHHHHHH
Confidence 4467766555444444333 6777777 333332 0 111000 001123345555543 344455556
Q ss_pred HHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHH
Q 018602 153 VAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFL 232 (353)
Q Consensus 153 l~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L 232 (353)
++-+-.+.. ... .+ -+++.+...+.+. ++.|+..|+.++..+... ....+... +++.+..+|
T Consensus 100 L~~l~~i~~-----~~~-~~-~l~~~v~~ll~~~-------~~~VRk~A~~~l~~i~~~---~p~~~~~~-~~~~l~~lL 161 (526)
T PF01602_consen 100 LRTLSNIRT-----PEM-AE-PLIPDVIKLLSDP-------SPYVRKKAALALLKIYRK---DPDLVEDE-LIPKLKQLL 161 (526)
T ss_dssp HHHHHHH-S-----HHH-HH-HHHHHHHHHHHSS-------SHHHHHHHHHHHHHHHHH---CHCCHHGG-HHHHHHHHT
T ss_pred Hhhhhhhcc-----cch-hh-HHHHHHHHHhcCC-------chHHHHHHHHHHHHHhcc---CHHHHHHH-HHHHHhhhc
Confidence 666666551 111 11 1345555555533 467899888877766322 12233233 689999999
Q ss_pred hcCCHHHHHHHHHHHHHHhccchH-HHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 233 KSGDLSRRRNTVLVLREVISSDHR-RVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 233 ~~gs~~~R~~Aa~lL~~Lss~~~~-~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
+..+...+.+|+.++.++ ...+. ....+ +.++..|.+++... +|-.....++.|..++...
T Consensus 162 ~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~---~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 162 SDKDPSVVSAALSLLSEI-KCNDDSYKSLI---PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp THSSHHHHHHHHHHHHHH-HCTHHHHTTHH---HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSS
T ss_pred cCCcchhHHHHHHHHHHH-ccCcchhhhhH---HHHHHHhhhccccc-chHHHHHHHHHHHhcccCC
Confidence 888999999999999999 23232 22233 35666666666554 7777777777777777653
No 70
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.83 E-value=1.6 Score=41.32 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCCChhHHhhccCCC-------cHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhch
Q 018602 196 SVLEEILSTLTLLFPLAGEALTYLGSAS-------SMHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGA 267 (353)
Q Consensus 196 ~v~E~AL~~L~~L~~~~~e~k~~l~~~~-------~l~~Lv~~L~-~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~ga 267 (353)
..|.-||.+|..|+ ..+.|-.+|.+.+ ....|++.|. +++...|+-|+.+|.+|+..+......|+..+++
T Consensus 139 SPqrlaLEaLcKLs-V~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLS-VIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhh-eeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 35788999999984 4577888765433 2333444444 3588999999999999986655666678877799
Q ss_pred HHHHHHhhcCC
Q 018602 268 IESLYTLIKEP 278 (353)
Q Consensus 268 i~~LV~lL~~~ 278 (353)
|..||.++.+.
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 71
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.37 E-value=13 Score=41.51 Aligned_cols=28 Identities=25% Similarity=0.133 Sum_probs=17.5
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 174 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 174 G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
++++.|...|... +..++..|+.+|..+
T Consensus 652 ~~~~~L~~aL~D~-------d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 652 GFGPALVAALGDG-------AAAVRRAAAEGLREL 679 (897)
T ss_pred hHHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 4667777777433 356777776666544
No 72
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=87.22 E-value=2.4 Score=34.86 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhcc
Q 018602 150 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG 220 (353)
Q Consensus 150 ~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~ 220 (353)
...++-|..++-++..+...+.+.|.+|.+++.-.-. +.|+-++|-|+-++.+|.....+|++.|.
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-----~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-----DHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-----cccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3467778888889999999999998899988875322 35788999999999999766788888765
No 73
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.18 E-value=4.7 Score=39.56 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCch
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKP 304 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~N 304 (353)
+-.++.+|..-++..|..|+.-+..|+.. ..+...-.....++.|.+++.+. .| .+.|..+|-|++-.. .-
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~----~l 75 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKE----EL 75 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhH----HH
Confidence 45678889888999999999999988754 22333323346889999999876 33 777999999998765 67
Q ss_pred HHHHHHcCcHHHHHHHhhhccccchhhhh-----ccCCHHHHHHH
Q 018602 305 IQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFSTDFAAVIT 344 (353)
Q Consensus 305 r~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~~~~eGR~ai 344 (353)
|.++.+. .+..+..++.+....+++.+- |+.-+.+-+++
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence 8888888 777777777766555665544 44444444443
No 74
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.95 E-value=13 Score=33.80 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=62.9
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCc-HHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 018602 175 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS-MHCMVWFLKSGDLSRRRNTVLVLREVISS 253 (353)
Q Consensus 175 ~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~-l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~ 253 (353)
++|.|+..+... +..+++.|..+|..+...-. ..+.. ++.+...+++.+...|..++..+..+...
T Consensus 95 ~l~~Ll~~~~~~-------~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 95 LLPPLLKKLGDS-------KKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHGGG----------HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccc-------cHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 456666665443 33456666666665532111 01233 56666677788999999999999887643
Q ss_pred chHHHHHhhh---hhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 254 DHRRVNMFLE---IEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 254 ~~~~~~~IG~---~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
.......+.. .+.+++.++..+.|+ +|...+.|-.++..+..
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYS 206 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHH
Confidence 2311222322 135788888888888 88999989888888854
No 75
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=85.90 E-value=7 Score=41.74 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=87.3
Q ss_pred ccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 219 LGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 219 l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~-~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
+.+.+++..++.+|..|+...+..+..+|.+|. .. ...+...=.. |+|..|..++.+. ++...+.++.+|+|+.-.
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV-mefs~~kskfl~~-ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV-MEFSNLKSKFLRN-NGIDILESMLTDP-DFNSRANSLWVLRHLMFN 491 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHH-hhcccHHHHHHHc-CcHHHHHHHhcCC-CchHHHHHHHHHHHHHhc
Confidence 556779999999999898888899999999986 21 2455544365 9999999999887 777888999999999876
Q ss_pred CCCCCchHHHHH-HcC-cHHHHHHHhhhccccchhhhh------ccCCHHHHHHHh
Q 018602 298 ASAADKPIQKFV-DMG-LVSLLLETLVDAQRSLCEKPW------VFSTDFAAVITG 345 (353)
Q Consensus 298 ~~~~~~Nr~~~V-eaG-aV~~LlelL~~~~~~~~E~aL------L~~~~eGR~ai~ 345 (353)
. .+..+.. -+. --.-++.+..|.+-++-|-++ +|.|.+--.=+.
T Consensus 492 ~----de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll 543 (678)
T KOG1293|consen 492 C----DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLL 543 (678)
T ss_pred c----hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 5 3443332 222 223455566677778889888 777776554443
No 76
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=85.62 E-value=7.7 Score=43.92 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCCChhHHhhccC----CCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHH
Q 018602 198 LEEILSTLTLLFPLAGEALTYLGS----ASSMHCMVWFLKS-GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLY 272 (353)
Q Consensus 198 ~E~AL~~L~~L~~~~~e~k~~l~~----~~~l~~Lv~~L~~-gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV 272 (353)
.+-+|++|.|+..-..+.-...++ -|-.+++...|+. |+.+.+.-|.-++.-+.+- .+..+.|.+. |.+..|.
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~-~vL~~LL 1819 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATC-NVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhh-hHHHHHH
Confidence 567888888875433332233332 2456777777765 5777788899888877643 6677788665 8999999
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhh
Q 018602 273 TLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 322 (353)
Q Consensus 273 ~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~ 322 (353)
.+|.+ -|....-++.+||+|.+.. +-...+.+-|++.-+..++.
T Consensus 1820 ~lLHS--~PS~R~~vL~vLYAL~S~~----~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1820 TLLHS--QPSMRARVLDVLYALSSNG----QIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred HHHhc--ChHHHHHHHHHHHHHhcCc----HHHHHHHhcCchhhhhHHHh
Confidence 99965 4667788999999999886 78888888898888887664
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=85.60 E-value=3.3 Score=29.07 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhccchH-HHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 018602 238 SRRRNTVLVLREVISSDHR-RVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM 294 (353)
Q Consensus 238 ~~R~~Aa~lL~~Lss~~~~-~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nL 294 (353)
..|.+|+..|=+++...+. ....+ +.+++.|+.+|+++ ++.....|..+|-+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~---~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYL---PELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHH---HHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHH---HHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 5688899988877644333 23322 47999999999887 667788888887654
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=85.23 E-value=12 Score=39.68 Aligned_cols=130 Identities=13% Similarity=0.192 Sum_probs=82.9
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHH---HHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 018602 174 GAVSVLAAAFESFSKTCLDEHVSVLEE---ILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREV 250 (353)
Q Consensus 174 G~i~~Lv~~L~s~~~~~~~~~~~v~E~---AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~L 250 (353)
+++|.+-.+|.+.++. ..++++. |+.++..= .+... -..+++.++.-+..-.+.++.+++-+|-.+
T Consensus 213 yiv~~lp~il~~~~d~----~~~Vr~Aa~~a~kai~~~--~~~~a-----VK~llpsll~~l~~~kWrtK~aslellg~m 281 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDK----INKVREAAVEAAKAIMRC--LSAYA-----VKLLLPSLLGSLLEAKWRTKMASLELLGAM 281 (569)
T ss_pred hHHhhHHHHHHHhhcc----chhhhHHHHHHHHHHHHh--cCcch-----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 5677777777666432 2344443 44333321 11111 122455555555555889999999999988
Q ss_pred hccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhc
Q 018602 251 ISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA 324 (353)
Q Consensus 251 ss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~ 324 (353)
..+.+.....- -+.+++.|.+.+.+. .|.-+++|..+|..+|..- +|-. ++ -.++.|++-+.+.
T Consensus 282 ~~~ap~qLs~~--lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svi----dN~d--I~-~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 282 ADCAPKQLSLC--LPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVI----DNPD--IQ-KIIPTLLDALADP 345 (569)
T ss_pred HHhchHHHHHH--HhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhh----ccHH--HH-HHHHHHHHHhcCc
Confidence 86655433322 248999999999887 8999999999999999875 5654 11 1456666666543
No 79
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=83.86 E-value=10 Score=38.78 Aligned_cols=153 Identities=13% Similarity=0.148 Sum_probs=78.1
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
.++.-+..|+--+..+.+.++. .+... +++.+..+|... ++.++..|+.++..+ ...++.-. -.-+.
T Consensus 126 ~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~-------~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~ 192 (526)
T PF01602_consen 126 PSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDK-------DPSVVSAALSLLSEI-KCNDDSYK-SLIPK 192 (526)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHS-------SHHHHHHHHHHHHHH-HCTHHHHT-THHHH
T ss_pred CchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCC-------cchhHHHHHHHHHHH-ccCcchhh-hhHHH
Confidence 3556667788888888887654 33444 688888888443 456788888888766 11111100 00112
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
.++.+..++...+.-.+...+.+|..+....+..... ..++..+..++++. ++.-.-.|..++.++.... .
T Consensus 193 ~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~----~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~----~ 263 (526)
T PF01602_consen 193 LIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK----NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSP----E 263 (526)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSH----H
T ss_pred HHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH----HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcch----H
Confidence 2333333334445555555666655554332221100 23455555555433 4444445555555554432 1
Q ss_pred hHHHHHHcCcHHHHHHHhhh
Q 018602 304 PIQKFVDMGLVSLLLETLVD 323 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~ 323 (353)
+-..++++|+++|.+
T Consensus 264 -----~~~~~~~~L~~lL~s 278 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSS 278 (526)
T ss_dssp -----HHHHHHHHHHHHHTS
T ss_pred -----HHHhhHHHHHHHhhc
Confidence 333355555555543
No 80
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=83.68 E-value=21 Score=35.92 Aligned_cols=157 Identities=14% Similarity=0.156 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHH
Q 018602 150 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMV 229 (353)
Q Consensus 150 ~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv 229 (353)
..+.+=+|.+..+. ..=..+.+.+.--.++..|..... .+.| +|+|+.....+.......+ . ...+.+.+++
T Consensus 43 aa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~----~~~E-R~QALkliR~~l~~~~~~~-~-~~~~vvralv 114 (371)
T PF14664_consen 43 AAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNK----NDVE-REQALKLIRAFLEIKKGPK-E-IPRGVVRALV 114 (371)
T ss_pred HHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCC----ChHH-HHHHHHHHHHHHHhcCCcc-c-CCHHHHHHHH
Confidence 34556666666654 455566777776677777754321 1233 7788887765532211111 1 2567899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHH
Q 018602 230 WFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFV 309 (353)
Q Consensus 230 ~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~V 309 (353)
.+..+.+-.-|..|..+|.+|+-.+++ .+-.. |.+..|++.+-++ +.+.....+.++.++..++ +..+.+
T Consensus 115 aiae~~~D~lr~~cletL~El~l~~P~---lv~~~-gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p-----~tR~yl 184 (371)
T PF14664_consen 115 AIAEHEDDRLRRICLETLCELALLNPE---LVAEC-GGIRVLLRALIDG-SFSISESLLDTLLYLLDSP-----RTRKYL 184 (371)
T ss_pred HHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHc-CCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCc-----chhhhh
Confidence 999998888899999999999855444 33354 8889999998876 5557888888999998875 444445
Q ss_pred HcC-cHHHHHHHhhhc
Q 018602 310 DMG-LVSLLLETLVDA 324 (353)
Q Consensus 310 eaG-aV~~LlelL~~~ 324 (353)
..| -++.++.-..|.
T Consensus 185 ~~~~dL~~l~apftd~ 200 (371)
T PF14664_consen 185 RPGFDLESLLAPFTDF 200 (371)
T ss_pred cCCccHHHHHHhhhhh
Confidence 555 455555555443
No 81
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=82.88 E-value=6.9 Score=34.40 Aligned_cols=117 Identities=13% Similarity=0.173 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhh-hhHHHhcCCHHHHHHHhhcccccc--cchhHHHHHHHHHHH
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERN-KRCIVDYGAVSVLAAAFESFSKTC--LDEHVSVLEEILSTL 205 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~n-R~~i~~aG~i~~Lv~~L~s~~~~~--~~~~~~v~E~AL~~L 205 (353)
.....++.+.... ...+.+++|+...+..+.. =.-|.+.|++..|+.+|....... ...+.+.+.+++..|
T Consensus 67 ~p~~~i~~L~~~~------~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl 140 (187)
T PF06371_consen 67 SPEWYIKKLKSRP------STSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL 140 (187)
T ss_dssp HHHHHHHHHTTT--------HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHccC------ccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence 4445566664321 1125677777777765421 112455688899999886542100 012346678888888
Q ss_pred HhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 018602 206 TLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 251 (353)
Q Consensus 206 ~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Ls 251 (353)
..+.+.......++..++.+..|+..|.+.+..+|..|.-+|-.++
T Consensus 141 kal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 141 KALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8775533334456678999999999999999999999988877653
No 82
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.58 E-value=1.3 Score=44.80 Aligned_cols=61 Identities=8% Similarity=-0.017 Sum_probs=48.7
Q ss_pred hhhhhhhhHHhhhccccch-hHHH-HHhHHHHhhcCCccccccccccCCceecCchhh--hhhhh
Q 018602 47 HVRLINLAKWLVESAWVAL-RLFQ-ERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTK 107 (353)
Q Consensus 47 ~~~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~ 107 (353)
..+.|++=+..+.+|++.. +..+ ..|..+++.....||.=++.+....+.+|+.|. ++.|.
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFK 89 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHH
Confidence 3456999999999999766 6655 456777888888899988888877899999999 55554
No 83
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=79.86 E-value=31 Score=30.69 Aligned_cols=119 Identities=8% Similarity=0.140 Sum_probs=82.3
Q ss_pred CCCcHHHHHHHHhcCCH------HHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC-CChhHHHHHHHHHHH
Q 018602 221 SASSMHCMVWFLKSGDL------SRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP-ICPTATEASFVVVYH 293 (353)
Q Consensus 221 ~~~~l~~Lv~~L~~gs~------~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~-~s~~a~k~Al~aL~n 293 (353)
+.+.+..|+.++.+|+. +.-..+...+.+|....--..+.+ +. .+|.-.+..++.. .++...+.|+..|.+
T Consensus 9 ~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~-~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 9 SRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SD-SFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred hccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cH-HHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 45678889999988873 444567777777764322234555 43 7999999998754 367888899999999
Q ss_pred hhcCCCCCCchHHHHHHcC-cHHHHHHHhhhccccchhhhh------ccCCHHHH-HHHh
Q 018602 294 MITSASAADKPIQKFVDMG-LVSLLLETLVDAQRSLCEKPW------VFSTDFAA-VITG 345 (353)
Q Consensus 294 Lc~~~~~~~~Nr~~~VeaG-aV~~LlelL~~~~~~~~E~aL------L~~~~eGR-~ai~ 345 (353)
++... ...-..|+.. -++.|+.+|.+.+..+.-.++ +...++++ .+|.
T Consensus 87 ~Vl~S----~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 87 IVLNS----PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHhCC----HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99875 6767777776 789999999765544444444 44555543 3443
No 84
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.25 E-value=54 Score=33.88 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCC-----hh-H---HhhccC
Q 018602 151 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLA-----GE-A---LTYLGS 221 (353)
Q Consensus 151 ~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~-----~e-~---k~~l~~ 221 (353)
..+.++..+|.--+ -=-.+++-.+++.|+.+|... |.++.-..+..|--|.-.| ++ . -..+.+
T Consensus 103 d~IQ~mhvlAt~Pd-LYp~lveln~V~slL~LLgHe-------NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd 174 (536)
T KOG2734|consen 103 DIIQEMHVLATMPD-LYPILVELNAVQSLLELLGHE-------NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD 174 (536)
T ss_pred HHHHHHHhhhcChH-HHHHHHHhccHHHHHHHhcCC-------CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh
Confidence 35566666665333 233577778899999999654 3344444555555543222 12 1 223557
Q ss_pred CCcHHHHHHHHhcC------CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCC-hhHHHHHHHHHHHh
Q 018602 222 ASSMHCMVWFLKSG------DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPIC-PTATEASFVVVYHM 294 (353)
Q Consensus 222 ~~~l~~Lv~~L~~g------s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s-~~a~k~Al~aL~nL 294 (353)
.++++.|+.-+.+= ...+-.++.+++.++....++.+..+... |++.-|..-+..... ..-...|..+|.=+
T Consensus 175 g~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLail 253 (536)
T KOG2734|consen 175 GQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAIL 253 (536)
T ss_pred ccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHH
Confidence 88999999887653 23455678888999888877777777554 888888775553311 12344455555544
Q ss_pred hcCCCCCCchHHHHHHcCcHHHHHHHhhhc---cc------cchhhhh--ccC---CHHHHHHHhccCCc
Q 018602 295 ITSASAADKPIQKFVDMGLVSLLLETLVDA---QR------SLCEKPW--VFS---TDFAAVITGEERPT 350 (353)
Q Consensus 295 c~~~~~~~~Nr~~~VeaGaV~~LlelL~~~---~~------~~~E~aL--L~~---~~eGR~ai~~~~~~ 350 (353)
--.. +.|+...-....|..|++-|.-- ++ .+.|... ||+ -+++|+-+....|.
T Consensus 254 lq~s---~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGl 320 (536)
T KOG2734|consen 254 LQNS---DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGL 320 (536)
T ss_pred hccC---chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccH
Confidence 4333 36999999999999999999621 22 2333333 665 56899888876654
No 85
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.59 E-value=10 Score=32.02 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=56.6
Q ss_pred hhhhhhhhhhcccCCCCCCCCCChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHh
Q 018602 104 QQTKFNLQREKSEGYAKLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAF 183 (353)
Q Consensus 104 ~~w~~~l~r~~~~g~~tp~~p~~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L 183 (353)
+=|+.|.-+=+.+.| .-+..|++-+..+ .|+....=|...|-.+++..+.-|..+...|+-..+..++
T Consensus 28 ~FW~ENa~kf~~~~~---------~llk~L~~lL~~s---~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm 95 (119)
T PF11698_consen 28 KFWRENADKFEENNF---------ELLKKLIKLLDKS---DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELM 95 (119)
T ss_dssp HHHHHHSGGGSSGGG---------HHHHHHHHHH-SH---HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHT
T ss_pred cHHHHHHHHHHHccc---------HHHHHHHHHHccC---CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHh
Confidence 347776444333344 2334444444222 1433444488999999999999999998889999999999
Q ss_pred hcccccccchhHHHHHHHHHHHHhc
Q 018602 184 ESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 184 ~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
... +++|+.+||-++-.|
T Consensus 96 ~h~-------d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 96 NHE-------DPEVRYEALLAVQKL 113 (119)
T ss_dssp S-S-------SHHHHHHHHHHHHHH
T ss_pred cCC-------CHHHHHHHHHHHHHH
Confidence 764 578999998877544
No 86
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=77.11 E-value=62 Score=32.41 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhChhhhh----HHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHH
Q 018602 151 DLVAKIKKWIKESERNKR----CIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMH 226 (353)
Q Consensus 151 ~Al~~Lr~Lakes~~nR~----~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~ 226 (353)
-+.+++-.+..+++.|-- .++.+|+.+.++....... -++...|...+..++ .-....+.|-.+..++
T Consensus 101 LackqigcilEdcDtnaVseillvvNaeilklildcIgged-------deVAkAAiesikria-lfpaaleaiFeSellD 172 (524)
T KOG4413|consen 101 LACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-------DEVAKAAIESIKRIA-LFPAALEAIFESELLD 172 (524)
T ss_pred hhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-------HHHHHHHHHHHHHHH-hcHHHHHHhcccccCC
Confidence 366777777777775432 2467799999999886542 345555555554442 2233334333333332
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 227 CMVWF---LKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 227 ~Lv~~---L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
.+-.. .+..+ -.|.--..++-++++.+++...-.-.+ |.+..|..=++...+.-..-..+...+.|...+ .
T Consensus 173 dlhlrnlaakcnd-iaRvRVleLIieifSiSpesaneckkS-GLldlLeaElkGteDtLVianciElvteLaete----H 246 (524)
T KOG4413|consen 173 DLHLRNLAAKCND-IARVRVLELIIEIFSISPESANECKKS-GLLDLLEAELKGTEDTLVIANCIELVTELAETE----H 246 (524)
T ss_pred hHHHhHHHhhhhh-HHHHHHHHHHHHHHhcCHHHHhHhhhh-hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh----h
Confidence 22111 22333 345666677788888877544444344 777777666654345555666788888888765 6
Q ss_pred hHHHHHHcCcHHHHHHHhhhcccc
Q 018602 304 PIQKFVDMGLVSLLLETLVDAQRS 327 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~~~~ 327 (353)
.|..+.+.|.++.+-..++..+..
T Consensus 247 greflaQeglIdlicnIIsGadsd 270 (524)
T KOG4413|consen 247 GREFLAQEGLIDLICNIISGADSD 270 (524)
T ss_pred hhhhcchhhHHHHHHHHhhCCCCC
Confidence 899999999999998888754433
No 87
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.66 E-value=18 Score=31.16 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=58.6
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~-~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
.++..|-+=|++++......|..+|..+..- .......|++ .+++..|++++.+..+++.++..+..+.+-..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS-REFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4778888888999999999999999998743 3445556755 49999999999876677888888888888754
No 88
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.50 E-value=35 Score=35.26 Aligned_cols=179 Identities=13% Similarity=0.170 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHhCh-----h-hhh---HHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhc
Q 018602 149 GRDLVAKIKKWIKESE-----R-NKR---CIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYL 219 (353)
Q Consensus 149 ~~~Al~~Lr~Lakes~-----~-nR~---~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l 219 (353)
....+.-++.|+.++- + .+. .+++.++++.|++-+...+... .....-.+.+++++-++...+++--..+
T Consensus 142 ~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsv-keea~gv~~~L~vveNlv~~r~~~~~~~ 220 (536)
T KOG2734|consen 142 AIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESV-KEEADGVHNTLAVVENLVEVRPAICTEI 220 (536)
T ss_pred HHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcc-hhhhhhhHHHHHHHHHHHhccHHHHHHH
Confidence 3456677777776642 1 222 3466689999998886653211 1123446778888888765555555555
Q ss_pred cCCCcHHHHHHHHhc-C-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc-----CCCC---hhHHHHHHH
Q 018602 220 GSASSMHCMVWFLKS-G-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK-----EPIC---PTATEASFV 289 (353)
Q Consensus 220 ~~~~~l~~Lv~~L~~-g-s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~-----~~~s---~~a~k~Al~ 289 (353)
++.|.+.++.+=++. + -..-+.+|.-+|--+-..+++++...|.- ..+..|++-+. ++.. .+-.+.-..
T Consensus 221 ~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l-~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFd 299 (536)
T KOG2734|consen 221 VEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPL-DGIDVLLRQLAVYKRHDPATVDEEEMMENLFD 299 (536)
T ss_pred HHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCc-ccHHHHHhhcchhhccCCCCcCHHHHHHHHHH
Confidence 555666655553332 2 23456777777777665666788899887 55555555442 3222 234455555
Q ss_pred HHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhh--ccccchhhhh
Q 018602 290 VVYHMITSASAADKPIQKFVDMGLVSLLLETLVD--AQRSLCEKPW 333 (353)
Q Consensus 290 aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~--~~~~~~E~aL 333 (353)
+|..+...+ .||.+++....++--.=++.. ..++-+-|+|
T Consensus 300 cLCs~lm~~----~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvL 341 (536)
T KOG2734|consen 300 CLCSLLMAP----ANRERFLKGEGLQLMNLMLREKKVSRGSALKVL 341 (536)
T ss_pred HHHHHhcCh----hhhhhhhccccHHHHHHHHHHHHHhhhhHHHHH
Confidence 566555565 799999998666543333322 2455666666
No 89
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=76.30 E-value=15 Score=32.67 Aligned_cols=79 Identities=10% Similarity=0.178 Sum_probs=59.5
Q ss_pred HhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 018602 171 VDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREV 250 (353)
Q Consensus 171 ~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~L 250 (353)
.+.-||.-.+..+.... .+..+++.++++|-++...+......+...=.++.++..|+.++.+.+.+|.+++-.|
T Consensus 55 l~~~FI~Kia~~Vn~~~-----~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 55 LSDSFIKKIASYVNSSA-----MDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred ccHHHHHHHHHHHcccc-----ccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33456777778886542 2467899999999888544444455566666899999999999999999999999998
Q ss_pred hccc
Q 018602 251 ISSD 254 (353)
Q Consensus 251 ss~~ 254 (353)
-...
T Consensus 130 ~~kA 133 (160)
T PF11841_consen 130 FLKA 133 (160)
T ss_pred HhcC
Confidence 6433
No 90
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.02 E-value=21 Score=30.15 Aligned_cols=73 Identities=10% Similarity=0.058 Sum_probs=58.5
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcC--CCChhHHHHHHHHHHHhhc
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKE--PICPTATEASFVVVYHMIT 296 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~-~~~~~~IG~~~gai~~LV~lL~~--~~s~~a~k~Al~aL~nLc~ 296 (353)
.++..|-+=|++|+...+..|..+|..++.-. +.....|++. .++..|++++.. ..+++.++.++..+.+...
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~-~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADK-EFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 36778888899999999999999999998443 3456677664 899999999976 4577888888888888754
No 91
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.61 E-value=35 Score=37.37 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=89.3
Q ss_pred hhhHHHhc--CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhH-HhhccCCCcHHHHHHHHhcCCHHHHHH
Q 018602 166 NKRCIVDY--GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEA-LTYLGSASSMHCMVWFLKSGDLSRRRN 242 (353)
Q Consensus 166 nR~~i~~a--G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~-k~~l~~~~~l~~Lv~~L~~gs~~~R~~ 242 (353)
+..+...+ +++|.|+.+|...++++.+.+-...-.|=..|-++ .++ +..|+. .+++.+-.-+++.+..-|+.
T Consensus 309 ~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~----A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~rea 383 (859)
T KOG1241|consen 309 SKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLF----AQCVGDDIVP-HVLPFIEENIQNPDWRNREA 383 (859)
T ss_pred hhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHH----HHHhcccchh-hhHHHHHHhcCCcchhhhhH
Confidence 34444444 88999999996643222111122222222233332 122 223333 57888887888999999999
Q ss_pred HHHHHHHHhccch--HHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHH
Q 018602 243 TVLVLREVISSDH--RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLET 320 (353)
Q Consensus 243 Aa~lL~~Lss~~~--~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~Llel 320 (353)
|+..+=++..--+ ..+.++ +++++.++.++.++ +-..+..+..+|..+|..-. +.-....-..+.++.+++=
T Consensus 384 avmAFGSIl~gp~~~~Lt~iV---~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~g 457 (859)
T KOG1241|consen 384 AVMAFGSILEGPEPDKLTPIV---IQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEG 457 (859)
T ss_pred HHHHHHhhhcCCchhhhhHHH---hhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHH
Confidence 9998888762212 223333 59999999999876 76777888899999976431 1122222334566777777
Q ss_pred hhhc
Q 018602 321 LVDA 324 (353)
Q Consensus 321 L~~~ 324 (353)
|.|.
T Consensus 458 L~De 461 (859)
T KOG1241|consen 458 LNDE 461 (859)
T ss_pred hhhC
Confidence 7664
No 92
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=75.40 E-value=25 Score=33.65 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHH
Q 018602 240 RRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLE 319 (353)
Q Consensus 240 R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~Lle 319 (353)
..+|..+|.-++-..+..+...++. ..+..|+++|....++...-+++.+|.++..-+ ..|...+-+.|.+..+.+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~-~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~---p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHRE-QNMELLLDLLSPSNPPAIQSACLDTLVCILLDS---PENQRDFEELNGLSTVCS 183 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhh-hhHHHHHHHhccCCCchHHHHHHHHHHHHHHcC---hHHHHHHHHhCCHHHHHH
Confidence 4568888888876667788888775 999999999965557788888999999996543 279999999999999999
Q ss_pred Hhhhc
Q 018602 320 TLVDA 324 (353)
Q Consensus 320 lL~~~ 324 (353)
++.+.
T Consensus 184 llk~~ 188 (257)
T PF08045_consen 184 LLKSK 188 (257)
T ss_pred HHccc
Confidence 99753
No 93
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=74.50 E-value=17 Score=32.05 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=55.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
....+...|++.+.+.|-.++.++..+....+ .-..+......+..|+.+|+...++...+.|..+|-.+...
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45667888989999999999999998863321 22233444468999999999876778888888888888653
No 94
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=74.45 E-value=23 Score=28.58 Aligned_cols=68 Identities=9% Similarity=0.095 Sum_probs=50.6
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM 294 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nL 294 (353)
..++.+...+...+...|.+|+-.|++++.... -+.+..-+.++..|.+++.|. +++ ++.|...|-+|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~-d~~-Vr~~a~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP-DEN-VRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC-chh-HHHHHHHHHHH
Confidence 357888888888999999999999999985422 234434468899999999876 554 55566666554
No 95
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=73.91 E-value=6.2 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=24.4
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 267 AIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 267 ai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
+++.++++++|+ ++.-+..|..+|-+++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 478899999988 99999999999998864
No 96
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.65 E-value=99 Score=30.63 Aligned_cols=185 Identities=12% Similarity=0.075 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhcc------CCCc
Q 018602 151 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG------SASS 224 (353)
Q Consensus 151 ~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~------~~~~ 224 (353)
.|+..+-.++.+.. -|+.|.+. ++.+++..+-... ....+.+..+|.||+..++....++. +.+.
T Consensus 61 ~a~~alVnlsq~~~-l~~~ll~~-~~k~l~~~~~~p~-------~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~l 131 (353)
T KOG2973|consen 61 PAATALVNLSQKEE-LRKKLLQD-LLKVLMDMLTDPQ-------SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGL 131 (353)
T ss_pred HHHHHHHHHHhhHH-HHHHHHHH-HHHHHHHHhcCcc-------cchHHHHHHHHHHhccCchHHHHHHHhcccccccch
Confidence 35666666666544 34444333 6666666664331 12344555677777554444333322 2567
Q ss_pred HHHHHHHHhcC-C-HHHHHHHHHHHHHHhccchHHHHHhhhhhc-hHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCC
Q 018602 225 MHCMVWFLKSG-D-LSRRRNTVLVLREVISSDHRRVNMFLEIEG-AIESLYTLIKEPICPTATEASFVVVYHMITSASAA 301 (353)
Q Consensus 225 l~~Lv~~L~~g-s-~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~g-ai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~ 301 (353)
+++...+..+| + ...=.+-+.++-+||..... +...-...- ....|+.+- +..+.--..-...+|.|.|--.
T Consensus 132 m~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~g-R~l~~~~k~~p~~kll~ft-~~~s~vRr~GvagtlkN~cFd~--- 206 (353)
T KOG2973|consen 132 MRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAG-RKLLLEPKRFPDQKLLPFT-SEDSQVRRGGVAGTLKNCCFDA--- 206 (353)
T ss_pred HHHHHHHhCcccccccchhHHHHHHHHHhhhhhh-hhHhcchhhhhHhhhhccc-ccchhhhccchHHHHHhhhccc---
Confidence 77777777666 3 12334667777778766333 333323321 112222222 2222222333567888888765
Q ss_pred CchHHHHHHcC--cHHHHHH---------------------Hhhhc-c--------ccchhhhh-ccCCHHHHHHHhccC
Q 018602 302 DKPIQKFVDMG--LVSLLLE---------------------TLVDA-Q--------RSLCEKPW-VFSTDFAAVITGEER 348 (353)
Q Consensus 302 ~~Nr~~~VeaG--aV~~Lle---------------------lL~~~-~--------~~~~E~aL-L~~~~eGR~ai~~~~ 348 (353)
++...+...+ +.+.|+- +|++. + +...|-.+ ||.+..||+.+.+..
T Consensus 207 -~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kg 285 (353)
T KOG2973|consen 207 -KLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKG 285 (353)
T ss_pred -hhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcC
Confidence 6777776643 3343332 22211 1 11223333 999999999998765
Q ss_pred Cc
Q 018602 349 PT 350 (353)
Q Consensus 349 ~~ 350 (353)
.=
T Consensus 286 vY 287 (353)
T KOG2973|consen 286 VY 287 (353)
T ss_pred ch
Confidence 43
No 97
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=72.72 E-value=7.4 Score=27.24 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCChh-HHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 018602 196 SVLEEILSTLTLLFPLAGE-ALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREV 250 (353)
Q Consensus 196 ~v~E~AL~~L~~L~~~~~e-~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~L 250 (353)
.+++.|+.+|-.+.....+ .+. ..+..++.|+..|+..+.+.|.+|+..|-+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP--YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678888888776422211 121 2356899999999988889999999887543
No 98
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.48 E-value=30 Score=29.93 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=58.3
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVIS-SDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss-~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
.++..|.+=|++++......|..+|..+.. +.......|++. +++..|++++.+..++.-++..+..+.....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask-~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR-DFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 477888888899999999999999999984 334455567564 9999999999886677888888888887753
No 99
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=71.38 E-value=16 Score=37.46 Aligned_cols=99 Identities=17% Similarity=0.153 Sum_probs=63.5
Q ss_pred HHHHHhccchHHHHHhhhhhchHHHHHHhh---------cCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHH
Q 018602 246 VLREVISSDHRRVNMFLEIEGAIESLYTLI---------KEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSL 316 (353)
Q Consensus 246 lL~~Lss~~~~~~~~IG~~~gai~~LV~lL---------~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~ 316 (353)
.|+-|+ -+....+-|... ..+.-|.+.- .+..++.....|+++|.|+...+ ..-|..+++.|..+.
T Consensus 4 ~LRiLs-Rd~~~~~~l~~~-~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s---~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 4 TLRILS-RDPTGLDPLFTE-EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS---PSARQIFVDLGLAEK 78 (446)
T ss_pred HHHHHc-cCcccchhhccH-HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC---HHHHHHHHHcCcHHH
Confidence 445454 223334444232 5555566554 23347789999999999998765 378999999999999
Q ss_pred HHHHhhhc-cc--cc-----hhhhh-cc--CCHHHHHHHhccCC
Q 018602 317 LLETLVDA-QR--SL-----CEKPW-VF--STDFAAVITGEERP 349 (353)
Q Consensus 317 LlelL~~~-~~--~~-----~E~aL-L~--~~~eGR~ai~~~~~ 349 (353)
+++.|... ++ .. .=+.| |+ .+.+.|..+..+..
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 99999764 21 11 11222 33 46778888776543
No 100
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=71.05 E-value=12 Score=32.82 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=72.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchHH-HHHhhhhhchHHHHHHhhc-CCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 226 HCMVWFLKSGDLSRRRNTVLVLREVISSDHRR-VNMFLEIEGAIESLYTLIK-EPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 226 ~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~-~~~IG~~~gai~~LV~lL~-~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
+.+...+..++.+....|..++-.|--..++. ..+++. +|+++.++.+.. +..+......++++|-+-|.. +
T Consensus 46 ~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~-eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-----~ 119 (157)
T PF11701_consen 46 DFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLS-EGFLESLLPLASRKSKDRKVQKAALELLSAACID-----K 119 (157)
T ss_dssp HHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCT-TTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-----H
T ss_pred HHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhh-hhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-----H
Confidence 33444455666677888888888876554443 445545 599999999987 444788889999999999987 6
Q ss_pred hHHHHHHcCcHHHHHHHhhhcc-cc-chhhhh
Q 018602 304 PIQKFVDMGLVSLLLETLVDAQ-RS-LCEKPW 333 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~~-~~-~~E~aL 333 (353)
++..++..-+++-|-+++...+ .. +-.+|+
T Consensus 120 ~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~ 151 (157)
T PF11701_consen 120 SCRTFISKNYVSWLKELYKNSKDDSEIRVLAA 151 (157)
T ss_dssp HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 8999998889999998885332 22 445554
No 101
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=70.39 E-value=67 Score=32.74 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=25.7
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHH
Q 018602 176 VSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTV 244 (353)
Q Consensus 176 i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa 244 (353)
+..|+..|... +..++..+..+|-.+ ..++..+.|+..|++.+...|..++
T Consensus 88 ~~~L~~~L~d~-------~~~vr~aaa~ALg~i-----------~~~~a~~~L~~~L~~~~p~vR~aal 138 (410)
T TIGR02270 88 LRSVLAVLQAG-------PEGLCAGIQAALGWL-----------GGRQAEPWLEPLLAASEPPGRAIGL 138 (410)
T ss_pred HHHHHHHhcCC-------CHHHHHHHHHHHhcC-----------CchHHHHHHHHHhcCCChHHHHHHH
Confidence 55555555433 223555555555432 2344555566666655655554444
No 102
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=70.00 E-value=26 Score=33.54 Aligned_cols=83 Identities=10% Similarity=0.025 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHH
Q 018602 149 GRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCM 228 (353)
Q Consensus 149 ~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~L 228 (353)
...|++=|+-++--++..|.++........|+.+|.... .+.++-.+|.+|..+...+..|.+...+-+.+..+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~------~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v 181 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSN------PPAIQSACLDTLVCILLDSPENQRDFEELNGLSTV 181 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCC------CchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHH
Confidence 345788899999999999999999999999999995432 24567778877765544457788888788889999
Q ss_pred HHHHhcCCH
Q 018602 229 VWFLKSGDL 237 (353)
Q Consensus 229 v~~L~~gs~ 237 (353)
+.++++.+.
T Consensus 182 ~~llk~~~~ 190 (257)
T PF08045_consen 182 CSLLKSKST 190 (257)
T ss_pred HHHHccccc
Confidence 999988753
No 103
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=69.67 E-value=35 Score=32.49 Aligned_cols=154 Identities=17% Similarity=0.233 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHHhChh----hhhHHHhcCCHH-HHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccC
Q 018602 147 TGGRDLVAKIKKWIKESER----NKRCIVDYGAVS-VLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS 221 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~~----nR~~i~~aG~i~-~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~ 221 (353)
.+|.+.++.|..+.+.++. -|+++++.++++ =|+.+|.+... +.++...++.+|.+|.-.-+-. ...
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~-----~~~l~~~~l~LLV~LT~P~~~~---~~~ 80 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKD-----DDKLFLACLRLLVNLTWPIELL---VES 80 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccC-----chHHHHHHHHHHHHhCCCHHHh---ccC
Confidence 5789999999998887654 366788877665 56666655422 3567788888888874211110 000
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC----C------CChhHHHHHHHHH
Q 018602 222 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE----P------ICPTATEASFVVV 291 (353)
Q Consensus 222 ~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~----~------~s~~a~k~Al~aL 291 (353)
. ..+...+.+..-+...+ -.+|+.+... +++..+++++.. + .+-...+-.+..+
T Consensus 81 ~-----------~~~~~~~~~~~~l~~~l----~~yK~afl~~-~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~Li 144 (266)
T PF04821_consen 81 Q-----------PKDKNQRRNIPELLKYL----QSYKEAFLDP-RVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLI 144 (266)
T ss_pred C-----------CCChHHHHHHHHHHHHH----HHHHHHHccc-HHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHH
Confidence 0 01233333444444433 3567777664 788888877632 1 1234566777778
Q ss_pred HHhhcCCCC--C-----------CchHHHHHHcCcHHHHHHHhhhc
Q 018602 292 YHMITSASA--A-----------DKPIQKFVDMGLVSLLLETLVDA 324 (353)
Q Consensus 292 ~nLc~~~~~--~-----------~~Nr~~~VeaGaV~~LlelL~~~ 324 (353)
.|+...++. . ++-...+-+.|+...|+.+..+.
T Consensus 145 RNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~ 190 (266)
T PF04821_consen 145 RNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSP 190 (266)
T ss_pred HHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCc
Confidence 888433210 0 01123344556666666666543
No 104
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=68.82 E-value=77 Score=32.31 Aligned_cols=42 Identities=12% Similarity=-0.068 Sum_probs=22.1
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK 276 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~ 276 (353)
..++.|...+.+.+...|..|+..+- .+|. ++++..|..+..
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~-----------~lG~-~~A~~~l~~~~~ 219 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGL-----------LAGS-RLAWGVCRRFQV 219 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHH-----------HcCC-HhHHHHHHHHHh
Confidence 44555555555556666655555542 2333 255666666443
No 105
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=68.48 E-value=42 Score=31.83 Aligned_cols=147 Identities=8% Similarity=0.113 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC-CCChhHHhhccCCCcHH
Q 018602 148 GGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF-PLAGEALTYLGSASSMH 226 (353)
Q Consensus 148 ~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~-~~~~e~k~~l~~~~~l~ 226 (353)
....|+.-++-++.+ ++.|..+.++-+.-+|-.+|...+.. .....++-.+++++..|. +.+.+--+-+.+.+.+|
T Consensus 116 RvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~--~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 116 RVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSN--SKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred HHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccC--CccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 345577777777775 56788899998887788887554321 112334556677665443 34444445566888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccchH------HHHHhhhhhchHHHHHH-hhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 227 CMVWFLKSGDLSRRRNTVLVLREVISSDHR------RVNMFLEIEGAIESLYT-LIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 227 ~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~------~~~~IG~~~gai~~LV~-lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
...+++..|+--++.-|+-++-.+...+.. ..+..-...-.+..+|. ++..+ +.+..|.++++-..||..+
T Consensus 193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~-~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG-STRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHheeecCCH
Confidence 999999999988888888877776533221 11112122233444442 33334 7799999999999999865
No 106
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=68.44 E-value=1e+02 Score=32.39 Aligned_cols=141 Identities=12% Similarity=0.148 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHHHhCh---hhhhHHHhcCCHHHHHHHhhccc-ccccchhHHHHHHHHHHHHhcCCCChh---HHhhc
Q 018602 147 TGGRDLVAKIKKWIKESE---RNKRCIVDYGAVSVLAAAFESFS-KTCLDEHVSVLEEILSTLTLLFPLAGE---ALTYL 219 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~---~nR~~i~~aG~i~~Lv~~L~s~~-~~~~~~~~~v~E~AL~~L~~L~~~~~e---~k~~l 219 (353)
.++..|+=-+-.+.|.++ .||+.+-++=..+++=.+|.+.+ .+++..+ -.+.-++++|.-++. ++| .++++
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~-Vy~~i~itvLacFC~-~pElAsh~~~v 103 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDD-VYLQISITVLACFCR-VPELASHEEMV 103 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHH-HHHHHHHHHHHHHhC-ChhhccCHHHH
Confidence 566777777777887765 48888888844578888886653 2222222 235677888888754 333 23344
Q ss_pred cCCCcHHHHHHHHhcC-CH--H----HHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHH
Q 018602 220 GSASSMHCMVWFLKSG-DL--S----RRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVY 292 (353)
Q Consensus 220 ~~~~~l~~Lv~~L~~g-s~--~----~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~ 292 (353)
+.||.+..++..| +. + .-..+-..|+.+++........| .+ |.++.+-++-.-....-...-|+.++.
T Consensus 104 ---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~-G~~~~~~Q~y~~~~~~~d~alal~Vll 178 (698)
T KOG2611|consen 104 ---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-AS-GGLRVIAQMYELPDGSHDMALALKVLL 178 (698)
T ss_pred ---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hc-CchHHHHHHHhCCCCchhHHHHHHHHH
Confidence 4789999999887 32 2 23456677787776644567778 55 899999988543322233333555554
Q ss_pred Hh
Q 018602 293 HM 294 (353)
Q Consensus 293 nL 294 (353)
-+
T Consensus 179 l~ 180 (698)
T KOG2611|consen 179 LL 180 (698)
T ss_pred HH
Confidence 33
No 107
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=68.35 E-value=27 Score=38.30 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=77.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
++..+.+=|++.+...|..|...+-.|= . .+++| -+++.+.+.+.++ ++..+|.|.-++..+=..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~-~----~el~~---~~~~~ik~~l~d~-~ayVRk~Aalav~kly~l------ 157 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLR-V----KELLG---NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRL------ 157 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcC-h----HHHHH---HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhc------
Confidence 5777778888899999999998887662 2 45563 3689999999888 999999999999999764
Q ss_pred hHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 304 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
++....++|.+..+..++.|.+.-++--|+
T Consensus 158 d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl 187 (757)
T COG5096 158 DKDLYHELGLIDILKELVADSDPIVIANAL 187 (757)
T ss_pred CHhhhhcccHHHHHHHHhhCCCchHHHHHH
Confidence 477788999999999999887777766666
No 108
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.34 E-value=27 Score=39.63 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCC
Q 018602 222 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAA 301 (353)
Q Consensus 222 ~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~ 301 (353)
+-.++.+-.+|.+.++..|..|..+|-.++. .-.+.++|.-+.+++..++.|+|+ +|+.+-+|+.++-.++..-
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E--Gc~~~m~~~l~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl--- 420 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAE--GCSDVMIGNLPKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDL--- 420 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhh---
Confidence 3467888888999999999999988887762 234567777778999999999988 9999999999999997632
Q ss_pred CchHHHHHHcCcHHHHHHHhhhc
Q 018602 302 DKPIQKFVDMGLVSLLLETLVDA 324 (353)
Q Consensus 302 ~~Nr~~~VeaGaV~~LlelL~~~ 324 (353)
..-..+--..-..+.|+..+.+.
T Consensus 421 ~p~iqk~~~e~l~~aL~~~ld~~ 443 (1075)
T KOG2171|consen 421 QPEIQKKHHERLPPALIALLDST 443 (1075)
T ss_pred cHHHHHHHHHhccHHHHHHhccc
Confidence 14555555555666777777643
No 109
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=68.19 E-value=19 Score=34.22 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHhccchHHHHHhh------hhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc--hHH
Q 018602 235 GDLSRRRNTVLVLREVISSDHRRVNMFL------EIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK--PIQ 306 (353)
Q Consensus 235 gs~~~R~~Aa~lL~~Lss~~~~~~~~IG------~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~--Nr~ 306 (353)
+...-|..|.-.|..|+ +.+.|...|= +.+.++..|+++|....++-..+-|+..|.|||... . -|.
T Consensus 136 ~~lSPqrlaLEaLcKLs-V~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~----~~~~r~ 210 (257)
T PF12031_consen 136 SPLSPQRLALEALCKLS-VIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGD----EAAARA 210 (257)
T ss_pred CCCCHHHHHHHHHHHhh-eeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhccc----HHHHHH
Confidence 34566788999999997 5465555442 234578888888887778999999999999999864 3 456
Q ss_pred HHHHcCcHHHHHHHhhhcc
Q 018602 307 KFVDMGLVSLLLETLVDAQ 325 (353)
Q Consensus 307 ~~VeaGaV~~LlelL~~~~ 325 (353)
-+.+.++|..|+.-+.+++
T Consensus 211 iA~q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 211 IAMQKPCISHLIAFIEDAE 229 (257)
T ss_pred HHHhhchHHHHHHHHHHHH
Confidence 6777899999999997653
No 110
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=67.22 E-value=66 Score=28.00 Aligned_cols=91 Identities=19% Similarity=0.121 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCChh-HHhhccCCCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHh
Q 018602 198 LEEILSTLTLLFPLAGE-ALTYLGSASSMHCMVWFLK--SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTL 274 (353)
Q Consensus 198 ~E~AL~~L~~L~~~~~e-~k~~l~~~~~l~~Lv~~L~--~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~l 274 (353)
.-.++.+|..+++...+ .-.++...|+++.+..+.. ..+... +.++.=+.+.+..+...+..|.+ ..++-|-++
T Consensus 60 ~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~-~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~ 136 (157)
T PF11701_consen 60 LIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKV-QKAALELLSAACIDKSCRTFISK--NYVSWLKEL 136 (157)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHH-HHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHH-HHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHH
Confidence 55677788777777644 5667889999999999998 334333 33443344444344566666633 578888888
Q ss_pred hcCCCChh-HHHHHHHHH
Q 018602 275 IKEPICPT-ATEASFVVV 291 (353)
Q Consensus 275 L~~~~s~~-a~k~Al~aL 291 (353)
++.+.+.. -+-.|+.+|
T Consensus 137 ~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 137 YKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp TTTCC-HH-CHHHHHHHH
T ss_pred HccccchHHHHHHHHHHH
Confidence 86553443 344444444
No 111
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=66.70 E-value=44 Score=28.29 Aligned_cols=73 Identities=8% Similarity=0.012 Sum_probs=54.8
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChh-HHHHHHHHHHHhhc
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPT-ATEASFVVVYHMIT 296 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~-~~~~~~~IG~~~gai~~LV~lL~~~~s~~-a~k~Al~aL~nLc~ 296 (353)
.++..|-+=|++++......|..+|..+..- .......|++. +++..|++++....+.. .++..+..+.+-..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~-~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK-EFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3677778888899999999999999998843 34455677564 99999999998764433 66777777776643
No 112
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=65.93 E-value=1.4e+02 Score=33.15 Aligned_cols=165 Identities=10% Similarity=0.140 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhccc-ccccchhHHHHHHHHHHHHhcCCCChhH-----HhhccCC
Q 018602 149 GRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFS-KTCLDEHVSVLEEILSTLTLLFPLAGEA-----LTYLGSA 222 (353)
Q Consensus 149 ~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~-~~~~~~~~~v~E~AL~~L~~L~~~~~e~-----k~~l~~~ 222 (353)
....+-+|-..+-.-..||+.|.+.|+++.|+..|...- .+......++.|..+.++-.|.....+. +......
T Consensus 138 ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~ 217 (802)
T PF13764_consen 138 LLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLS 217 (802)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcccccccc
Confidence 344455555544445789999999999999999985421 1000122566777777766542211110 1111112
Q ss_pred ----CcHHHHHHHHhcCC-------HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC--------CCChhH
Q 018602 223 ----SSMHCMVWFLKSGD-------LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE--------PICPTA 283 (353)
Q Consensus 223 ----~~l~~Lv~~L~~gs-------~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~--------~~s~~a 283 (353)
.....+..+|+... ......-+.+|=.|+ -|.. ..+..||+..+. ......
T Consensus 218 ~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt---------~G~~-e~m~~Lv~~F~p~l~f~~~D~~~~~~ 287 (802)
T PF13764_consen 218 GSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLT---------YGNE-EKMDALVEHFKPYLDFDKFDEEHSPD 287 (802)
T ss_pred ccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHh---------cCCH-HHHHHHHHHHHHhcChhhcccccCch
Confidence 24444555554432 233333344444443 2232 445555554431 101111
Q ss_pred HHHHHHHHHHhhc--CCCCCC-chHHHHHHcCcHHHHHHHhhh
Q 018602 284 TEASFVVVYHMIT--SASAAD-KPIQKFVDMGLVSLLLETLVD 323 (353)
Q Consensus 284 ~k~Al~aL~nLc~--~~~~~~-~Nr~~~VeaGaV~~LlelL~~ 323 (353)
-+--+..+..+.. .+..+| +=|..+++.|+|..+++.|.+
T Consensus 288 ~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 288 EQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLK 330 (802)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence 1223444444432 111112 357788999999999999974
No 113
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=64.21 E-value=54 Score=28.28 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=54.9
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchHHHHHhhhhhchHHHHHHhhcC-----CCChhHHHHHHHHHHHhh
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVIS-SDHRRVNMFLEIEGAIESLYTLIKE-----PICPTATEASFVVVYHMI 295 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss-~~~~~~~~IG~~~gai~~LV~lL~~-----~~s~~a~k~Al~aL~nLc 295 (353)
.++..|.+=|++++......|..+|..+.. +.......|++. +++..|++++.. ..++.-++..+..+..-.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~-~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKF-RFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 467788888999999999999999999984 445566678665 999999999963 135666776777776553
No 114
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=63.78 E-value=16 Score=22.71 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVI 251 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Ls 251 (353)
+|.+.+.++..+.+.|..|+..|-.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 788999999999999999999998886
No 115
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.76 E-value=1.4e+02 Score=32.72 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCch
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKP 304 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~N 304 (353)
...|-.+|.+..+..|--|.--+..|+++ +..-+.+ +. -..-.+..|+...+...++.|+..||.+|.. +|
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~dav-K~--h~d~Ii~sLkterDvSirrravDLLY~mcD~-----~N 401 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAV-KK--HQDTIINSLKTERDVSIRRRAVDLLYAMCDV-----SN 401 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHH-HH--HHHHHHHHhccccchHHHHHHHHHHHHHhch-----hh
Confidence 34444444444444444444444444433 1112222 11 1334445555333556777788888888876 47
Q ss_pred HHHHHHcCcHHHHHHHhhhccccchh
Q 018602 305 IQKFVDMGLVSLLLETLVDAQRSLCE 330 (353)
Q Consensus 305 r~~~VeaGaV~~LlelL~~~~~~~~E 330 (353)
...+| +.|+..|..++..+-|
T Consensus 402 ak~IV-----~elLqYL~tAd~sire 422 (938)
T KOG1077|consen 402 AKQIV-----AELLQYLETADYSIRE 422 (938)
T ss_pred HHHHH-----HHHHHHHhhcchHHHH
Confidence 77654 4566666555444433
No 116
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=63.71 E-value=34 Score=32.03 Aligned_cols=162 Identities=13% Similarity=0.044 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHHHHhChhhhhHHHhcC--CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhh-ccCCC
Q 018602 147 TGGRDLVAKIKKWIKESERNKRCIVDYG--AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTY-LGSAS 223 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~~nR~~i~~aG--~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~-l~~~~ 223 (353)
+.+.-++.=+|.++...+. -..+...+ ....+..++...... .+...+=-++++++|++. +...+.. +...+
T Consensus 78 ~~~fP~lDLlRl~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~ 152 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPA-SDLLASEDSGIADLLSTLISSGSSS---SPPANQMLALRLLANLFS-HPPGRQLLLSHFD 152 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCH-HHHHHSTTTH-HHHHHHHHHCCTTT---SSHHHHHHHHHHHHHHTT-SCCCHHHHHCTHH
T ss_pred ccchhHHhHHHHHHhCccH-HHHHhccccchHHHHHHHHHhccCC---CcHHHHHHHHHHHHHhhC-CCccHHHHHhccc
Confidence 4456677777776665443 33555543 356666666554321 233445668899999975 3344444 33332
Q ss_pred --cHHHHHHHHhcC---CHHHHHHHHHHHHHHhccchHHHHHhhh-h-hchHHHHHHh-hcCCCChhHHHHHHHHHHHhh
Q 018602 224 --SMHCMVWFLKSG---DLSRRRNTVLVLREVISSDHRRVNMFLE-I-EGAIESLYTL-IKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 224 --~l~~Lv~~L~~g---s~~~R~~Aa~lL~~Lss~~~~~~~~IG~-~-~gai~~LV~l-L~~~~s~~a~k~Al~aL~nLc 295 (353)
.++.+..+..+- +-..|..++.+++++|... .+...+. . .+.+..++++ .....++.+.--++.+|-+|+
T Consensus 153 ~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~--~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 153 SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLL--HKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHH--HHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHH--HhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 333333333222 5678899999999998331 1111111 0 1356666773 444458899999999999999
Q ss_pred cCCCCCCchHHHHHHc-CcHHHHHH
Q 018602 296 TSASAADKPIQKFVDM-GLVSLLLE 319 (353)
Q Consensus 296 ~~~~~~~~Nr~~~Vea-GaV~~Lle 319 (353)
..+ .....+.+. |+-..+.+
T Consensus 231 ~~~----~~~~~~~~~l~~~~~~~~ 251 (268)
T PF08324_consen 231 SSS----DSAKQLAKSLDVKSVLSK 251 (268)
T ss_dssp CCS----HHHHHHCCCCTHHHHHHH
T ss_pred ccC----hhHHHHHHHcChHHHHHH
Confidence 765 566666663 44444433
No 117
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=63.51 E-value=42 Score=27.55 Aligned_cols=69 Identities=10% Similarity=0.192 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhh-cCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcC
Q 018602 240 RRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLI-KEPICPTATEASFVVVYHMITSASAADKPIQKFVDMG 312 (353)
Q Consensus 240 R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL-~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaG 312 (353)
|..-+.+|=+|+.....+...+... |.|+.+++-- -|..+|-.++-|+.++.|||... .+|...+.+.-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n---~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN---PENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC---HHHHHHHHhcc
Confidence 4566778888886667888888665 6688888763 25569999999999999999865 46777666543
No 118
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=63.43 E-value=20 Score=27.57 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhcc----ccchhhhh--ccCCHHHHHHHhcc
Q 018602 284 TEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQ----RSLCEKPW--VFSTDFAAVITGEE 347 (353)
Q Consensus 284 ~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~----~~~~E~aL--L~~~~eGR~ai~~~ 347 (353)
.|+|+-++-|+++.+ ....-+-+.++|+.++++-...+ |+++=-+| ++++.+|++.+.+.
T Consensus 4 lKaaLWaighIgss~----~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP----LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcCh----HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 688999999998875 45555556789999999987653 45665556 99999999987653
No 119
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=63.26 E-value=2.1e+02 Score=30.93 Aligned_cols=140 Identities=18% Similarity=0.155 Sum_probs=75.8
Q ss_pred eecCchhhhhhhhh-----------hhhhhcccCCCCCCCCCChHHHHHHHHH---------------HHhccCCCChhh
Q 018602 95 VKVNTSLLYQQTKF-----------NLQREKSEGYAKLGIPMSSVEVLEINSK---------------ITAACKSEDQTG 148 (353)
Q Consensus 95 l~pN~~L~i~~w~~-----------~l~r~~~~g~~tp~~p~~~~~v~~ll~~---------------l~s~~~~~d~~~ 148 (353)
+-||..-.++.|.- .=+.+..+||..-..|++.-++..++-+ +.+..+..++..
T Consensus 164 Llp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a 243 (898)
T COG5240 164 LLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLA 243 (898)
T ss_pred hccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchh
Confidence 44555555788861 0014455788544456665555544444 333332222222
Q ss_pred HHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC----c
Q 018602 149 GRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS----S 224 (353)
Q Consensus 149 ~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~----~ 224 (353)
....++-+-.+.++++..+-.| .|+|-+-|++.. ..++-++..++..+ ..+| ..++ .
T Consensus 244 ~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~-------emV~lE~Ar~v~~~---~~~n----v~~~~~~~~ 304 (898)
T COG5240 244 GVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKF-------EMVFLEAARAVCAL---SEEN----VGSQFVDQT 304 (898)
T ss_pred heehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcc-------hhhhHHHHHHHHHH---HHhc----cCHHHHHHH
Confidence 2335555556666665555443 355555554431 23455555666654 2233 2333 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISS 253 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~ 253 (353)
+..|--+|++.....|-.|.++|-.|+-.
T Consensus 305 vs~L~~fL~s~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 305 VSSLRTFLKSTRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 44555566778889999999999999744
No 120
>PTZ00429 beta-adaptin; Provisional
Probab=62.10 E-value=33 Score=37.75 Aligned_cols=170 Identities=13% Similarity=0.094 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 206 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~ 206 (353)
+.++.++-+.|.+. +..++.++++++-.+...+..-- -+.+-.+.++.+. +.++..-+--.|.
T Consensus 31 kge~~ELr~~L~s~----~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~-------d~elKKLvYLYL~ 93 (746)
T PTZ00429 31 RGEGAELQNDLNGT----DSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPST-------DLELKKLVYLYVL 93 (746)
T ss_pred cchHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCC-------CHHHHHHHHHHHH
Confidence 34566666666543 44667788888776554432111 0112222333322 2333222222222
Q ss_pred hcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHH
Q 018602 207 LLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEA 286 (353)
Q Consensus 207 ~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~ 286 (353)
+.+..+.+. .++ ++..+.+=+++.+...|..|...+-.+- . ++ ++ +-++..+.+.+.+. +|--+|.
T Consensus 94 ~ya~~~pel-alL----aINtl~KDl~d~Np~IRaLALRtLs~Ir-~-~~---i~---e~l~~~lkk~L~D~-~pYVRKt 159 (746)
T PTZ00429 94 STARLQPEK-ALL----AVNTFLQDTTNSSPVVRALAVRTMMCIR-V-SS---VL---EYTLEPLRRAVADP-DPYVRKT 159 (746)
T ss_pred HHcccChHH-HHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCC-c-HH---HH---HHHHHHHHHHhcCC-CHHHHHH
Confidence 222211111 122 5777888888889999999998887763 2 22 33 23566777778776 8999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 287 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 287 Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
|+.+++.+-... ...+.+.|.++.|.++|.|.+..+.--|+
T Consensus 160 Aalai~Kly~~~------pelv~~~~~~~~L~~LL~D~dp~Vv~nAl 200 (746)
T PTZ00429 160 AAMGLGKLFHDD------MQLFYQQDFKKDLVELLNDNNPVVASNAA 200 (746)
T ss_pred HHHHHHHHHhhC------cccccccchHHHHHHHhcCCCccHHHHHH
Confidence 999999996542 23345678999999999887777776666
No 121
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.59 E-value=19 Score=41.02 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=84.8
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcc
Q 018602 175 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLK-SGDLSRRRNTVLVLREVISS 253 (353)
Q Consensus 175 ~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~-~gs~~~R~~Aa~lL~~Lss~ 253 (353)
+.|.++...++++- .+++++|..|-=+|.-|..++.+- -...+|.++.+|. +.++-.|.|++..+--++-.
T Consensus 920 f~piv~e~c~n~~~---~sdp~Lq~AAtLaL~klM~iSa~f-----ces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL---FSDPELQAAATLALGKLMCISAEF-----CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHhcCCCc---CCCHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 67777777766532 235677766644565554444221 1235788888887 55888889998888777622
Q ss_pred chHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhcccc
Q 018602 254 DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRS 327 (353)
Q Consensus 254 ~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~ 327 (353)
.-..+ +..-+.|.+.|+|. ++...+.|+.+|-||.... --+. -|.++.....|.|.+.+
T Consensus 992 ---fpnli---e~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd----miKV----KGql~eMA~cl~D~~~~ 1050 (1251)
T KOG0414|consen 992 ---FPNLI---EPWTEHLYRRLRDE-SPSVRKTALLVLSHLILND----MIKV----KGQLSEMALCLEDPNAE 1050 (1251)
T ss_pred ---ccccc---chhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh----hhHh----cccHHHHHHHhcCCcHH
Confidence 11233 24566778888887 8899999999999998753 2222 27888888788766443
No 122
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=61.12 E-value=90 Score=31.16 Aligned_cols=123 Identities=13% Similarity=0.084 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhcCCCChhHHhh-ccCCCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 018602 197 VLEEILSTLTLLFPLAGEALTY-LGSASSMHCMVWFLKS--GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 273 (353)
Q Consensus 197 v~E~AL~~L~~L~~~~~e~k~~-l~~~~~l~~Lv~~L~~--gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~ 273 (353)
.+--|++.|.+|.. +.+-|.+ .++..+-.+++.+|++ |..+-+-+..-++.-|+ .+......|-+-.+.|.-|++
T Consensus 165 Trlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aqdi~K~~dli~dli~ 242 (432)
T COG5231 165 TRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQDIDKMDDLINDLIA 242 (432)
T ss_pred HHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 45567777777643 3444443 4556677889999987 56777788888888886 556555666666689999999
Q ss_pred hhcCCCChhHHHHHHHHHHHhhc-CCCCCCchHHHHHHcCcHHHHHHHhhhc
Q 018602 274 LIKEPICPTATEASFVVVYHMIT-SASAADKPIQKFVDMGLVSLLLETLVDA 324 (353)
Q Consensus 274 lL~~~~s~~a~k~Al~aL~nLc~-~~~~~~~Nr~~~VeaGaV~~LlelL~~~ 324 (353)
+++...-....+-...++.|+|. .+ ..-...+.-.|-+.+-++.|.+.
T Consensus 243 iVk~~~keKV~Rlc~~Iv~n~~dK~p---K~~I~~~lll~~~~k~vq~L~er 291 (432)
T COG5231 243 IVKERAKEKVLRLCCGIVANVLDKSP---KGYIFSPLLLNDISKCVQVLLER 291 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc---cchhhhhHhhcchHHHHHHHHhc
Confidence 99865444666778888899987 33 24778888888777888887653
No 123
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=60.90 E-value=45 Score=26.87 Aligned_cols=55 Identities=7% Similarity=0.108 Sum_probs=40.8
Q ss_pred hchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHH--cCcHHHHHHHhhhccc
Q 018602 265 EGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVD--MGLVSLLLETLVDAQR 326 (353)
Q Consensus 265 ~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Ve--aGaV~~LlelL~~~~~ 326 (353)
+.++++++..+.+. +++..-.|..+|||++... +..++. ..+...|.++..|.+.
T Consensus 26 ~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~------~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 26 DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVA------RGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCCch
Confidence 35788888888887 8899999999999998763 344443 2366777777766543
No 124
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=60.89 E-value=1e+02 Score=28.11 Aligned_cols=94 Identities=9% Similarity=-0.002 Sum_probs=63.8
Q ss_pred CcHHHHHHHHhcC------CHHHHHHHHHHHHHHhccchHHHHHhhhhhch--HHHHHHhhcCCCChhHHHHHHHHHHHh
Q 018602 223 SSMHCMVWFLKSG------DLSRRRNTVLVLREVISSDHRRVNMFLEIEGA--IESLYTLIKEPICPTATEASFVVVYHM 294 (353)
Q Consensus 223 ~~l~~Lv~~L~~g------s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~ga--i~~LV~lL~~~~s~~a~k~Al~aL~nL 294 (353)
..|..|+..+..| ....-.+.+.++-++|...+-..-.+....+. +..|+..+... ++--++-++.++.|.
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHh
Confidence 3788888888773 23455689999999996633333344333344 67777777766 777788899999999
Q ss_pred hcCCCCCCchHHHHHHcCcHHHHHHHh
Q 018602 295 ITSASAADKPIQKFVDMGLVSLLLETL 321 (353)
Q Consensus 295 c~~~~~~~~Nr~~~VeaGaV~~LlelL 321 (353)
|-.. .+...+....-|..|-.+|
T Consensus 131 cFd~----~~H~~LL~~~~~~iLp~LL 153 (192)
T PF04063_consen 131 CFDT----DSHEWLLSDDEVDILPYLL 153 (192)
T ss_pred hccH----hHHHHhcCchhhhhHHHHH
Confidence 9876 6777777744344444433
No 125
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=60.04 E-value=6.2 Score=36.07 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=39.3
Q ss_pred hhhhhHHhhhccccch-hH-HHHHhHHHHhh----------------cCCccccccccccCCceecCchhh
Q 018602 50 LINLAKWLVESAWVAL-RL-FQERCEEELLW----------------AAEMIKIKAQDLKGKEVKVNTSLL 102 (353)
Q Consensus 50 ~c~l~~~~m~d~~~~~-~~-~~eR~~~e~~~----------------g~~tcP~T~q~l~~~~l~pN~~L~ 102 (353)
-|||-.+.++||+++. +. |=..+..+|+. +...||+-+.++....++|.+.-.
T Consensus 20 ~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg 90 (193)
T PLN03208 20 DCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG 90 (193)
T ss_pred CCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence 3999999999999875 55 44445555542 346899999999888898876543
No 126
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=59.98 E-value=61 Score=28.62 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhc-hHHHHHH
Q 018602 195 VSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEG-AIESLYT 273 (353)
Q Consensus 195 ~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~g-ai~~LV~ 273 (353)
+.++-+++.+|.-|..-. .-+. ...++.+...|+..+...|.+|..+|..|... + .+ +..| .+..++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~----~~~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d----~i-k~k~~l~~~~l~ 70 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRY----PNLV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D----MI-KVKGQLFSRILK 70 (178)
T ss_pred HHHHHHHHHHHHHHHHhC----cHHH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C----ce-eehhhhhHHHHH
Confidence 456777777666442111 0111 23688999999999999999999999999632 2 22 2224 3477777
Q ss_pred hhcCCCChhHHHHHHHHHHHhhcC
Q 018602 274 LIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 274 lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
.+.|. ++.-+..|..++..+...
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHh
Confidence 77776 888888888888888654
No 127
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=59.80 E-value=38 Score=29.98 Aligned_cols=80 Identities=24% Similarity=0.339 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHH
Q 018602 237 LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSL 316 (353)
Q Consensus 237 ~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~ 316 (353)
+..|.|++..+-.|+-. +-..+ +..++.+...|+++ +|..++.|+.+|.+|...+ --+.+ ...+..
T Consensus 2 ~~vR~n~i~~l~DL~~r---~~~~v---e~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d----~ik~k---~~l~~~ 67 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIR---YPNLV---EPYLPNLYKCLRDE-DPLVRKTALLVLSHLILED----MIKVK---GQLFSR 67 (178)
T ss_pred HHHHHHHHHHHHHHHHh---CcHHH---HhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcC----ceeeh---hhhhHH
Confidence 56788999998888622 22333 35788999999988 8999999999999997642 22222 113356
Q ss_pred HHHHhhhccccchh
Q 018602 317 LLETLVDAQRSLCE 330 (353)
Q Consensus 317 LlelL~~~~~~~~E 330 (353)
++.+|.|.+..+..
T Consensus 68 ~l~~l~D~~~~Ir~ 81 (178)
T PF12717_consen 68 ILKLLVDENPEIRS 81 (178)
T ss_pred HHHHHcCCCHHHHH
Confidence 66677665544333
No 128
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=59.07 E-value=50 Score=28.10 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=53.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCCChh---HHHHHHHHHHHhh
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPICPT---ATEASFVVVYHMI 295 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~-~~~~~~IG~~~gai~~LV~lL~~~~s~~---a~k~Al~aL~nLc 295 (353)
++..|-+=|+++++.....|..+|..+..-. +.....+++. .++..|++++....... .++.++..|....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~-~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK-EFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH-HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 5667777788999999999999999998433 4566778675 89999999987653433 5666666666553
No 129
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=58.57 E-value=38 Score=33.03 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=39.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cc--hHHHHHhhhhhchHHHHHHhhcCCC-ChhHHHHHHHHHH
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVIS-SD--HRRVNMFLEIEGAIESLYTLIKEPI-CPTATEASFVVVY 292 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss-~~--~~~~~~IG~~~gai~~LV~lL~~~~-s~~a~k~Al~aL~ 292 (353)
.++.+.+.+++|+.+++.-|+.++-=|+- .. ++..++. ..+.+.|.+++.++. ++.++-.++.+|-
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~---~~~~~~L~~~l~d~s~~~~~R~~~~~aLa 156 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF---EELKPVLKRILTDSSASPKARAACLEALA 156 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH---HHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 57888999999988777777655544431 11 2333444 357778888887762 3344333443433
No 130
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=56.85 E-value=1.3e+02 Score=27.34 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=66.6
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCC--Cc--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 018602 174 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSA--SS--MHCMVWFLKSGDLSRRRNTVLVLRE 249 (353)
Q Consensus 174 G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~--~~--l~~Lv~~L~~gs~~~R~~Aa~lL~~ 249 (353)
..+..|+..+..+.+.....+. -.+....+|.|++ -..+.|..+.++ .. |..|+-++.+.+...|..++.+|++
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~-~~~yla~vl~NlS-~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrN 129 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKD-NYDYLASVLANLS-QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRN 129 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCc-chhHHHHHHHHhc-CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 4677777777553211111111 2455557888884 347788876643 34 7888888888899999999999999
Q ss_pred HhccchHHHHHhhhh-hchHHHHHHhhc
Q 018602 250 VISSDHRRVNMFLEI-EGAIESLYTLIK 276 (353)
Q Consensus 250 Lss~~~~~~~~IG~~-~gai~~LV~lL~ 276 (353)
.+-..+.+..+++.. -++++.|.--|.
T Consensus 130 ccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 130 CCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 984445666677542 367777766664
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=55.98 E-value=2.6e+02 Score=30.53 Aligned_cols=165 Identities=12% Similarity=-0.015 Sum_probs=91.8
Q ss_pred hhhHHHHHHHHHHHHHhChhhhhHHH-hcC--CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCC
Q 018602 146 QTGGRDLVAKIKKWIKESERNKRCIV-DYG--AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSA 222 (353)
Q Consensus 146 ~~~~~~Al~~Lr~Lakes~~nR~~i~-~aG--~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~ 222 (353)
.+.+.-|+.-||.+.+....|-..+- +.| ++.-++..+. + .+.-+--+++.|.|+++ +..+++++.+.
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~-------~~an~ll~vR~L~N~f~-~~~g~~~~~s~ 628 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A-------DPANQLLVVRCLANLFS-NPAGRELFMSR 628 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c-------chhHHHHHHHHHHHhcc-CHHHHHHHHHH
Confidence 34556688889999888766554332 212 3333333332 1 12335567789999876 45666665532
Q ss_pred -CcHHHHHHHHhcCC-HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCC
Q 018602 223 -SSMHCMVWFLKSGD-LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASA 300 (353)
Q Consensus 223 -~~l~~Lv~~L~~gs-~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~ 300 (353)
..+..-+--.+.++ ..-+..-+.+.+++|-+--.....+|..+-...++..++..-.+-.|.--++.||-+|+...
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~-- 706 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD-- 706 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc--
Confidence 22222222234443 33445555556666522112122243332233333333332234456777888888999885
Q ss_pred CCchHHHHHHcCcHHHHHHHhhh
Q 018602 301 ADKPIQKFVDMGLVSLLLETLVD 323 (353)
Q Consensus 301 ~~~Nr~~~VeaGaV~~LlelL~~ 323 (353)
.+..+++..=-|..+...+.+
T Consensus 707 --~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 --ASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred --HHHHHHHHhcCHHHHHHHHHH
Confidence 799999988888888888864
No 132
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=52.64 E-value=1e+02 Score=32.72 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhH------Hhh--
Q 018602 147 TGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEA------LTY-- 218 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~------k~~-- 218 (353)
.+..++-+.|-..+|.++.-++.-+ ..+..++..+ ++++++|+.++.-|+..++.. |.+
T Consensus 19 ~~~~~~y~~il~~~kg~~k~K~Laa-----q~I~kffk~F--------P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~ 85 (556)
T PF05918_consen 19 SQHEEDYKEILDGVKGSPKEKRLAA-----QFIPKFFKHF--------PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQ 85 (556)
T ss_dssp GGGHHHHHHHHHGGGS-HHHHHHHH-----HHHHHHHCC---------GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHccCCHHHHHHHH-----HHHHHHHhhC--------hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHH
Confidence 3445677788888887766555422 3344555544 356777777777665433221 221
Q ss_pred cc--CCCcHHH----HHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc---CCCChhHHHHHHH
Q 018602 219 LG--SASSMHC----MVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK---EPICPTATEASFV 289 (353)
Q Consensus 219 l~--~~~~l~~----Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~---~~~s~~a~k~Al~ 289 (353)
+. +++.++. |+.+|.+.+..+....-..|.+|-.. +.+ +.+.+|..-+. .+ +....+.+++
T Consensus 86 ~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~--d~k-------~tL~~lf~~i~~~~~~-de~~Re~~lk 155 (556)
T PF05918_consen 86 LCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ--DPK-------GTLTGLFSQIESSKSG-DEQVRERALK 155 (556)
T ss_dssp G--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHH---HS--HHHHHHHHH
T ss_pred HHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc--CcH-------HHHHHHHHHHHhcccC-chHHHHHHHH
Confidence 11 2444444 44445555655555555555555422 112 33333333332 33 4456677777
Q ss_pred HHHH
Q 018602 290 VVYH 293 (353)
Q Consensus 290 aL~n 293 (353)
.|..
T Consensus 156 Fl~~ 159 (556)
T PF05918_consen 156 FLRE 159 (556)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 133
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=52.29 E-value=2.6e+02 Score=28.14 Aligned_cols=146 Identities=12% Similarity=0.090 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHh
Q 018602 196 SVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKS-GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTL 274 (353)
Q Consensus 196 ~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~-gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~l 274 (353)
-++-.++..+.-+++.+.+.-.....+|.++.+..=|+. .+.-.+.+..-++.+|+.. +...+.+... |.|..+-++
T Consensus 186 iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQe-glIdlicnI 263 (524)
T KOG4413|consen 186 IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQE-GLIDLICNI 263 (524)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchh-hHHHHHHHH
Confidence 456667777777777777766666778999999998876 4778889999999999855 4456677554 899999998
Q ss_pred hcCC-CChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhh-------hccccchhhhh-----ccCCHHHH
Q 018602 275 IKEP-ICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV-------DAQRSLCEKPW-----VFSTDFAA 341 (353)
Q Consensus 275 L~~~-~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~-------~~~~~~~E~aL-----L~~~~eGR 341 (353)
+... .+|-.+-.++..--.+-.. .|....++...+..++..+. -.+..+.|-|. |-+.-+|.
T Consensus 264 IsGadsdPfekfralmgfgkffgk-----eaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa 338 (524)
T KOG4413|consen 264 ISGADSDPFEKFRALMGFGKFFGK-----EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA 338 (524)
T ss_pred hhCCCCCcHHHHHHHHHHHHHhcc-----hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh
Confidence 8643 3454444354444333332 46666666555555544332 22444555555 77777887
Q ss_pred HHHhccC
Q 018602 342 VITGEER 348 (353)
Q Consensus 342 ~ai~~~~ 348 (353)
.-+..+.
T Consensus 339 dlllkTg 345 (524)
T KOG4413|consen 339 DLLLKTG 345 (524)
T ss_pred HHHhccC
Confidence 7666544
No 134
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=51.33 E-value=77 Score=35.56 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=90.7
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhcc-C-CCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 018602 174 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG-S-ASSMHCMVWFLKSGDLSRRRNTVLVLREVI 251 (353)
Q Consensus 174 G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~-~-~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Ls 251 (353)
..+|.|++-+... ++ ....+-+.+|.++. ..--|..+. . +..+|.+...|.-.+...|.++..++.-+.
T Consensus 867 ~ivP~l~~~~~t~-~~------~~K~~yl~~LshVl--~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 867 DIVPILVSKFETA-PG------SQKHNYLEALSHVL--TNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL 937 (1030)
T ss_pred hhHHHHHHHhccC-Cc------cchhHHHHHHHHHH--hcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHH
Confidence 4789998888732 11 11233334443321 111245444 3 778999999999999999999999998776
Q ss_pred ccchHHH-HHhhhhhchHHHHHHhhcCCCC--hhHHHHHHHHHHHhhc-CCCCCCchHHHHHHcCcHHHHHHHhhhcccc
Q 018602 252 SSDHRRV-NMFLEIEGAIESLYTLIKEPIC--PTATEASFVVVYHMIT-SASAADKPIQKFVDMGLVSLLLETLVDAQRS 327 (353)
Q Consensus 252 s~~~~~~-~~IG~~~gai~~LV~lL~~~~s--~~a~k~Al~aL~nLc~-~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~ 327 (353)
..++... +-+ + -+++-|..+=++..+ .....+|+.+|-.|.. .+ .++-.--+--++.+|++.|.|..|-
T Consensus 938 ~~~~tL~t~~~-~--Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P----~~~l~~fr~~Vl~al~k~LdDkKRl 1010 (1030)
T KOG1967|consen 938 TESETLQTEHL-S--TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLP----TKSLLSFRPLVLRALIKILDDKKRL 1010 (1030)
T ss_pred HhccccchHHH-h--HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCC----CcccccccHHHHHHhhhccCcHHHH
Confidence 3333211 122 1 367888877665532 5677889999999966 33 4555555566888899999876554
Q ss_pred chhhh
Q 018602 328 LCEKP 332 (353)
Q Consensus 328 ~~E~a 332 (353)
+-+.|
T Consensus 1011 VR~eA 1015 (1030)
T KOG1967|consen 1011 VRKEA 1015 (1030)
T ss_pred HHHHH
Confidence 44433
No 135
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=50.69 E-value=1.3e+02 Score=25.38 Aligned_cols=101 Identities=13% Similarity=0.014 Sum_probs=62.3
Q ss_pred CCceecCchhh-hhhhhhhhhhhcccCCCCCCCCCChHH-HHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhCh-hhhh
Q 018602 92 GKEVKVNTSLL-YQQTKFNLQREKSEGYAKLGIPMSSVE-VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKR 168 (353)
Q Consensus 92 ~~~l~pN~~L~-i~~w~~~l~r~~~~g~~tp~~p~~~~~-v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~-~nR~ 168 (353)
+...+|-+.+. |.+|.++ +. -+-.+ ...|.++|.. .++..+.++|+=|..++.... ..++
T Consensus 13 d~~p~pgy~~~Eia~~t~~---s~----------~~~~ei~d~L~kRL~~----~~~hVK~K~Lrilk~l~~~G~~~f~~ 75 (122)
T cd03572 13 DDEPTPGYLYEEIAKLTRK---SV----------GSCQELLEYLLKRLKR----SSPHVKLKVLKIIKHLCEKGNSDFKR 75 (122)
T ss_pred CCCCCchHHHHHHHHHHHc---CH----------HHHHHHHHHHHHHhcC----CCCcchHHHHHHHHHHHhhCCHHHHH
Confidence 34577888888 8888872 10 01112 2345667753 235666889999999887765 5777
Q ss_pred HHHhc-CCHHHHHHHhhccc--ccccchhHHHHHHHHHHHHhcCC
Q 018602 169 CIVDY-GAVSVLAAAFESFS--KTCLDEHVSVLEEILSTLTLLFP 210 (353)
Q Consensus 169 ~i~~a-G~i~~Lv~~L~s~~--~~~~~~~~~v~E~AL~~L~~L~~ 210 (353)
.+... -.|..+..+=.... .++ +-+..|++.|=.++..+++
T Consensus 76 ~~~~~~~~Ik~~~~f~g~~Dp~~Gd-~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 76 ELQRNSAQIRECANYKGPPDPLKGD-SLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHhHHHHHHHHHcCCCCCcccCc-chhHHHHHHHHHHHHHHhc
Confidence 77776 56666655543221 111 3456788888777776654
No 136
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.97 E-value=2.3e+02 Score=30.43 Aligned_cols=144 Identities=8% Similarity=0.091 Sum_probs=86.1
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHh-cCCHHHHHHHhhcccccccchhHHHHH-HHHHHHHhcCCCChhHHhhccCC
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVD-YGAVSVLAAAFESFSKTCLDEHVSVLE-EILSTLTLLFPLAGEALTYLGSA 222 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~-aG~i~~Lv~~L~s~~~~~~~~~~~v~E-~AL~~L~~L~~~~~e~k~~l~~~ 222 (353)
++.-|..|+..|+.+.+-.+.+ .+.- .|....++..+.+.. ..+..... ..-..|..+++ .+..+.-+.=.
T Consensus 263 ~~~iq~~al~Wi~efV~i~g~~--~l~~~s~il~~iLpc~s~~e----~~~i~~~a~~~n~~l~~l~s-~~~~~~~id~~ 335 (675)
T KOG0212|consen 263 EPEIQLKALTWIQEFVKIPGRD--LLLYLSGILTAILPCLSDTE----EMSIKEYAQMVNGLLLKLVS-SERLKEEIDYG 335 (675)
T ss_pred cHHHHHHHHHHHHHHhcCCCcc--hhhhhhhhhhhcccCCCCCc----cccHHHHHHHHHHHHHHHHh-hhhhccccchH
Confidence 4455667888888888776532 2222 244444444443321 11222121 11122333322 23333334334
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
..++.+.+.|++...++|..+..-+..|-...+. .... -...++.-|..-|.+. +.....-++..|-++|..+
T Consensus 336 ~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~-h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 336 SIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLV-HNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhh-hccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCc
Confidence 5788888888888999999998888777533232 2222 2237899999999887 6688889999999999875
No 137
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=48.14 E-value=2.2e+02 Score=27.23 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=25.1
Q ss_pred HhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 260 MFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 260 ~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
.+|.. .+++.|...+++. +......|..+|..+...
T Consensus 175 ~~~~~-~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 175 ELGDP-EAIPLLIELLEDE-DADVRRAAASALGQLGSE 210 (335)
T ss_pred HcCCh-hhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcc
Confidence 44443 6788888888776 556777788777777653
No 138
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=47.19 E-value=2.2e+02 Score=27.10 Aligned_cols=135 Identities=14% Similarity=0.137 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCc
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 224 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~ 224 (353)
|...+.+|+.-|.....+-+.++ + ...-+.+|+.++.+.-+ +......++..|..|.... . + .++.
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~--L-~~~ev~~L~~F~~~rl~-----D~~~~~~~l~gl~~L~~~~----~-~-~~~~ 77 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDF--L-SRQEVQVLLDFFCSRLD-----DHACVQPALKGLLALVKMK----N-F-SPES 77 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhh--c-cHHHHHHHHHHHHHHhc-----cHhhHHHHHHHHHHHHhCc----C-C-Chhh
Confidence 44445556666666666555322 1 11236778888755421 1233444455544442111 0 1 1111
Q ss_pred HHHHHH-HHhc-----CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 018602 225 MHCMVW-FLKS-----GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 225 l~~Lv~-~L~~-----gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
...++. +.++ -....|...-.++..|.....+....+|. +++.++++++..+.+|+...-+.+.+..+.
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~--~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGD--DFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchh--HHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 222222 2222 24567888888888886332233344543 799999999988889998887777766664
No 139
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.91 E-value=1.4e+02 Score=31.50 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=69.8
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHH----HHHHHH
Q 018602 174 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNT----VLVLRE 249 (353)
Q Consensus 174 G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~A----a~lL~~ 249 (353)
.|-.-|..+|...... -.+++++..+.+|.+| .||.+|...+.|.++..+++.|+...|.-+ +..|.+
T Consensus 16 ~FP~el~dLL~~~~~~---lp~~Lr~~i~~~LiLL-----rNk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn 87 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTV---LPPELREKIVKALILL-----RNKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKN 87 (616)
T ss_pred hhhHHHHHHHHhcccc---CCHHHHHHHHHHHHHH-----hccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 4667788888665322 2467899999888887 578888888899999999999987766533 333332
Q ss_pred HhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 018602 250 VISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 250 Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
.-.-+-.. .+ +. -.=..+..+|+++ ++.+.+.|+.++..|-
T Consensus 88 ~n~~~kn~--kl-nk-slq~~~fsml~~~-d~~~ak~a~~~~~eL~ 128 (616)
T KOG2229|consen 88 INKKHKND--KL-NK-SLQAFMFSMLDQS-DSTAAKMALDTMIELY 128 (616)
T ss_pred HHhhcccc--hH-HH-HHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 21110000 11 10 1223455778766 5567777888888873
No 140
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=44.40 E-value=95 Score=26.22 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=48.5
Q ss_pred CcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 223 SSMHCMVWFLKS-GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 223 ~~l~~Lv~~L~~-gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
..+..|+.+|.. .+..+-.-|+-=|-++...-+..+.++... |+-..+.+++..+ ++..++.|+.++.-+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~l-g~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKL-GAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHH-SHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhc-ChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 378899999943 344433444444444444445667777554 8888889999876 89999999999987754
No 141
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.84 E-value=2.1e+02 Score=31.93 Aligned_cols=224 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred cCCchhhhhhhhhhHHhhhc--cccchhH--HHHHhHHHHhhcCCccccccccccCCceecCchhh--hhhhhh-----h
Q 018602 41 TMPGKRHVRLINLAKWLVES--AWVALRL--FQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF-----N 109 (353)
Q Consensus 41 ~~~~~~~~~~c~l~~~~m~d--~~~~~~~--~~eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~-----~ 109 (353)
...++++..+-.+.+.||.| |.|.... .||-+ ||-.- .|-|+..+-=-++. ..+|-+ -
T Consensus 172 sLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~ev----------CPerl-dLIHknyrklC~ll~dvdeWgQvvlI~m 240 (968)
T KOG1060|consen 172 SLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEV----------CPERL-DLIHKNYRKLCRLLPDVDEWGQVVLINM 240 (968)
T ss_pred cCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHh----------chhHH-HHhhHHHHHHHhhccchhhhhHHHHHHH
Q ss_pred hhhhcccCCCCC------------------------CCCCChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChh
Q 018602 110 LQREKSEGYAKL------------------------GIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESER 165 (353)
Q Consensus 110 l~r~~~~g~~tp------------------------~~p~~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~ 165 (353)
|.|..-.++..| .|-....++.-|++.....-.+.++.....++.-...+|-..
T Consensus 241 L~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-- 318 (968)
T KOG1060|consen 241 LTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-- 318 (968)
T ss_pred HHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--
Q ss_pred hhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCCh-------------------------hHHhhcc
Q 018602 166 NKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAG-------------------------EALTYLG 220 (353)
Q Consensus 166 nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~-------------------------e~k~~l~ 220 (353)
..-+++++|+.+|.+. .++++..|..++.++.... +--..|+
T Consensus 319 -----~~~~i~kaLvrLLrs~--------~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La 385 (968)
T KOG1060|consen 319 -----QVTKIAKALVRLLRSN--------REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLA 385 (968)
T ss_pred -----HHHHHHHHHHHHHhcC--------CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHh
Q ss_pred CCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 018602 221 SASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM 294 (353)
Q Consensus 221 ~~~~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nL 294 (353)
+..-+..+.+=|+-= ...-|.-|++++..+..+ ......+ .. -++.+||.++++. +....-.|..++.-|
T Consensus 386 ~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrC-A~~~~sv-~~-tCL~gLv~Llssh-de~Vv~eaV~vIk~L 456 (968)
T KOG1060|consen 386 NESNISEILRELQTYIKSSDRSFAAAAVKAIGRC-ASRIGSV-TD-TCLNGLVQLLSSH-DELVVAEAVVVIKRL 456 (968)
T ss_pred hhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHhhCch-hh-HHHHHHHHHHhcc-cchhHHHHHHHHHHH
No 142
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=43.74 E-value=2e+02 Score=27.52 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=12.5
Q ss_pred CcHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 018602 223 SSMHCMVWFLKS-GDLSRRRNTVLVLRE 249 (353)
Q Consensus 223 ~~l~~Lv~~L~~-gs~~~R~~Aa~lL~~ 249 (353)
..++.++..|.+ .+...|..|+..|..
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~ 132 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGK 132 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHh
Confidence 344445555542 444444444444443
No 143
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=42.07 E-value=2.4e+02 Score=24.68 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcC--CHHHHHHHhhcccccccchhHHHHHHHHH
Q 018602 126 SSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYG--AVSVLAAAFESFSKTCLDEHVSVLEEILS 203 (353)
Q Consensus 126 ~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG--~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~ 203 (353)
.+.++..++.++.+.-.+.+...+-.++.-++.....++ ..+|.+.| .+..|...|.... ...+.+.++.
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~------~~~~~~~ai~ 90 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPD------PPSVLEAAII 90 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCC------CHHHHHHHHH
Confidence 456777888887665444556667778888888888764 35565543 6788888887642 2456777777
Q ss_pred HHHhcCCC---ChhHHhhccC---CCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 018602 204 TLTLLFPL---AGEALTYLGS---ASSMHCMVWFLKSGDLSRRRNTVLVLREV 250 (353)
Q Consensus 204 ~L~~L~~~---~~e~k~~l~~---~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~L 250 (353)
+|..++.. ..+..+.+.. ++++..++.+++. ......+..+|..+
T Consensus 91 ~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 91 TLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred HHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 77665431 1333333333 3456666665544 22223444444444
No 144
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=40.06 E-value=87 Score=33.33 Aligned_cols=85 Identities=11% Similarity=0.123 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCc
Q 018602 234 SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGL 313 (353)
Q Consensus 234 ~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGa 313 (353)
+|+.++|.-|+-.|-..-..=++.. +.+|..+++|..++ +..-.+.|++.|-.+|... .+...++
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~------~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~---~~~v~kv----- 97 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQ------EEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDN---PEHVSKV----- 97 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGH------HHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T-----T-HHHH-----
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhH---HHHHhHH-----
Confidence 5788888888888887753323322 36889999999877 7888999999999999753 2567774
Q ss_pred HHHHHHHhhhc---cccchhhhh
Q 018602 314 VSLLLETLVDA---QRSLCEKPW 333 (353)
Q Consensus 314 V~~LlelL~~~---~~~~~E~aL 333 (353)
+.+|+.+|... +..++-++|
T Consensus 98 aDvL~QlL~tdd~~E~~~v~~sL 120 (556)
T PF05918_consen 98 ADVLVQLLQTDDPVELDAVKNSL 120 (556)
T ss_dssp HHHHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 46788888532 334555555
No 145
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=39.98 E-value=2.1e+02 Score=23.43 Aligned_cols=96 Identities=14% Similarity=0.198 Sum_probs=61.1
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccc---------h----HHHHHhh-hhhchHHHHHHhhcCCCC---hhHH
Q 018602 222 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD---------H----RRVNMFL-EIEGAIESLYTLIKEPIC---PTAT 284 (353)
Q Consensus 222 ~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~---------~----~~~~~IG-~~~gai~~LV~lL~~~~s---~~a~ 284 (353)
+++++-++..+++ +.........+|..+...- . +.+..+. ..+.++..+.+++....+ +...
T Consensus 25 p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~ 103 (148)
T PF08389_consen 25 PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELV 103 (148)
T ss_dssp TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHH
T ss_pred chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 4567777776666 3444455555555554210 0 1222232 224566666676654422 7889
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhh
Q 018602 285 EASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD 323 (353)
Q Consensus 285 k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~ 323 (353)
+.+++++.+...+- ....++....++.+.++|.+
T Consensus 104 ~~~L~~l~s~i~~~-----~~~~i~~~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 104 KAALKCLKSWISWI-----PIELIINSNLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHTTTS------HHHHHSSSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhC-----CHHHhccHHHHHHHHHHcCC
Confidence 99999999998884 78888888899999999954
No 146
>PF04641 Rtf2: Rtf2 RING-finger
Probab=39.89 E-value=11 Score=35.84 Aligned_cols=49 Identities=10% Similarity=0.122 Sum_probs=35.0
Q ss_pred hhhhhhhHHhhhc--ccc---chhH-HHHHhHHHHhhcCCccccccccccCCceec
Q 018602 48 VRLINLAKWLVES--AWV---ALRL-FQERCEEELLWAAEMIKIKAQDLKGKEVKV 97 (353)
Q Consensus 48 ~~~c~l~~~~m~d--~~~---~~~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~l~p 97 (353)
.|.||++...|.. ++| +-|. +-|+...++- ....||+++++|...+++|
T Consensus 113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 5679999999965 333 3333 6666766663 4567999999999887664
No 147
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.55 E-value=5.7e+02 Score=28.37 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=40.2
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChh
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGE 214 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e 214 (353)
.|+..+-.||.=|-.||+.++.|-- -+.|.+..+|-.++ .|. +.=..+.+...|.++...
T Consensus 193 pDp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSs-----NNW-mLIKiiKLF~aLtplEPR 252 (877)
T KOG1059|consen 193 PDPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSS-----NNW-VLIKLLKLFAALTPLEPR 252 (877)
T ss_pred CCchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccC-----CCe-ehHHHHHHHhhccccCch
Confidence 4677778899999999999997654 34588888886553 233 244455666666565544
No 148
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=39.00 E-value=1.2e+02 Score=24.11 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
+.....-|....+..|.++...|..|..... ..+...++++..+...|+++ ++-.--.|.+.|-.|+...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHC
Confidence 3445555667778899999999999974423 23335567888888888887 6667777888888888754
No 149
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=38.59 E-value=1.1e+02 Score=32.88 Aligned_cols=115 Identities=10% Similarity=0.108 Sum_probs=72.2
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHH-hhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 018602 174 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEAL-TYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVIS 252 (353)
Q Consensus 174 G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k-~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss 252 (353)
.++|.|+++|...+.+..+.+-.+--.|-+.|-++ .+++ ..|.+| ++..+..-+++.+..-|+.|+..+=++..
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlf----aq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~ 395 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLF----AQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMH 395 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHH----HHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhc
Confidence 57899999997643211111112222233344433 2333 355555 67777777888899999999999988862
Q ss_pred cch-HHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 253 SDH-RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 253 ~~~-~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
-.. .....+ .+++++++..+..+. +...+.-+..+++.++.
T Consensus 396 gp~~~~lT~~--V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad 437 (858)
T COG5215 396 GPCEDCLTKI--VPQALPGIENEMSDS-CLWVKSTTAWCFGAIAD 437 (858)
T ss_pred CccHHHHHhh--HHhhhHHHHHhcccc-eeehhhHHHHHHHHHHH
Confidence 211 222233 258999999998866 66777778888887754
No 150
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.57 E-value=5.5e+02 Score=28.51 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC
Q 018602 225 MHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE 277 (353)
Q Consensus 225 l~~Lv~~L~-~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~ 277 (353)
.+.++..|+ ..+...|.-|+-+|+..+ +.++.. .++.+|.+-|..
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mc--D~~Nak------~IV~elLqYL~t 415 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMC--DVSNAK------QIVAELLQYLET 415 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHh--chhhHH------HHHHHHHHHHhh
Confidence 677888898 559999999999999986 233332 345566666543
No 151
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.63 E-value=2.4e+02 Score=30.87 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=76.1
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHH--hhccCC--CcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 018602 175 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEAL--TYLGSA--SSMHCMVWFLKSGDLSRRRNTVLVLREV 250 (353)
Q Consensus 175 ~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k--~~l~~~--~~l~~Lv~~L~~gs~~~R~~Aa~lL~~L 250 (353)
..|.|..+|.+.+. ..+|-|+++|.-++..+.+-- .....| -.||.+..+.++.++..|.+|+.-+-..
T Consensus 129 lLp~L~~~L~s~d~-------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 129 LLPQLCELLDSPDY-------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred HHHHHHHHhcCCcc-------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 56888888876531 246778888877654222211 112222 2799999999999999999999888765
Q ss_pred hccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 251 ISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 251 ss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
.-. .....+-....+++.|..+-.+. +|...|..-.+|..|-..
T Consensus 202 i~~--~~qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 202 III--QTQALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEV 245 (885)
T ss_pred eec--CcHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHh
Confidence 422 22233334457889998888666 888888777777777554
No 152
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=36.54 E-value=4.7e+02 Score=28.00 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CC-hh-----------
Q 018602 148 GGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LA-GE----------- 214 (353)
Q Consensus 148 ~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~-~~-~e----------- 214 (353)
.+..++.-+..++...+..= -..-..++|.|...|-.. ++++++.+..+|..+.. .+ .+
T Consensus 270 tK~aslellg~m~~~ap~qL-s~~lp~iiP~lsevl~DT-------~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~ 341 (569)
T KOG1242|consen 270 TKMASLELLGAMADCAPKQL-SLCLPDLIPVLSEVLWDT-------KPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDA 341 (569)
T ss_pred hHHHHHHHHHHHHHhchHHH-HHHHhHhhHHHHHHHccC-------CHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34456666666666554211 122336788888888543 56788887777766543 11 11
Q ss_pred ----------H-Hhh-----c--cCCCcHHHHHHHHhcC----CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHH
Q 018602 215 ----------A-LTY-----L--GSASSMHCMVWFLKSG----DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLY 272 (353)
Q Consensus 215 ----------~-k~~-----l--~~~~~l~~Lv~~L~~g----s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV 272 (353)
. +.+ + +++..+..|+-+|++| +...+..++.++-++++.-++-+.+.-=.+.++++|=
T Consensus 342 l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk 421 (569)
T KOG1242|consen 342 LADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK 421 (569)
T ss_pred hcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence 0 111 1 1244788888888887 5677888999999998665333333311223555555
Q ss_pred HhhcCCCChhHHHHHHHHHHHhh
Q 018602 273 TLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 273 ~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
..+.+. .|..+.-|.++|-.+-
T Consensus 422 ~~~~d~-~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 422 ENLDDA-VPEVRAVAARALGALL 443 (569)
T ss_pred HHhcCC-ChhHHHHHHHHHHHHH
Confidence 555555 6778877888886553
No 153
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.36 E-value=1.3e+02 Score=33.25 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhh
Q 018602 196 SVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLI 275 (353)
Q Consensus 196 ~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL 275 (353)
-++--||.+|.++++ .| ..++..|-+.++|++.+...|.-|+.....+-...++..+ -++..--++|
T Consensus 122 ~vVglAL~alg~i~s--~E-----mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e------~f~~~~~~lL 188 (866)
T KOG1062|consen 122 YVVGLALCALGNICS--PE-----MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE------HFVIAFRKLL 188 (866)
T ss_pred eehHHHHHHhhccCC--HH-----HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH------HhhHHHHHHH
Confidence 345556666666542 22 1356789999999999888888888777776544454332 3456666777
Q ss_pred cCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhh
Q 018602 276 KEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 322 (353)
Q Consensus 276 ~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~ 322 (353)
.+. ++...-.+++.++.+|... ..+...+=+ .++.++..|.
T Consensus 189 ~ek-~hGVL~~~l~l~~e~c~~~---~~~l~~fr~--l~~~lV~iLk 229 (866)
T KOG1062|consen 189 CEK-HHGVLIAGLHLITELCKIS---PDALSYFRD--LVPSLVKILK 229 (866)
T ss_pred hhc-CCceeeeHHHHHHHHHhcC---HHHHHHHHH--HHHHHHHHHH
Confidence 766 6677777899999999854 245555544 7777777775
No 154
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.04 E-value=19 Score=34.17 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=37.7
Q ss_pred hhhhhhhhhHHhhhccc---c--chhH-HHHHhHHHHhhcCCccccccccccCCceec
Q 018602 46 RHVRLINLAKWLVESAW---V--ALRL-FQERCEEELLWAAEMIKIKAQDLKGKEVKV 97 (353)
Q Consensus 46 ~~~~~c~l~~~~m~d~~---~--~~~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~l~p 97 (353)
.++++||.++....+.. + +.+. +.-.+-+.+.-+...||+|..++..+++++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 36789999998877632 2 2333 333366667888999999999999998875
No 155
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=35.82 E-value=2.1e+02 Score=28.83 Aligned_cols=98 Identities=13% Similarity=0.199 Sum_probs=70.2
Q ss_pred CCcHHHHHHHHhcCC---HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc-CCC--ChhHHHHHHHHHHHhh
Q 018602 222 ASSMHCMVWFLKSGD---LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK-EPI--CPTATEASFVVVYHMI 295 (353)
Q Consensus 222 ~~~l~~Lv~~L~~gs---~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~-~~~--s~~a~k~Al~aL~nLc 295 (353)
+..+.+|-.++++.. ...=..|+.++.....-++.....|-+. |.++.+.+-+. .+. +..+...--.++-++|
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~-Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~Aic 183 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEA-GLIDAFLDAITAKGILPSSEVLTSLPNVLSAIC 183 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHc-CChHHHHHHHhccCCCCcHHHHHHHHHHHhHHh
Confidence 556777777777753 2334678888888875556777778565 99999998887 553 3344444445556679
Q ss_pred cCCCCCCchHHHHHHcCcHHHHHHHhhhc
Q 018602 296 TSASAADKPIQKFVDMGLVSLLLETLVDA 324 (353)
Q Consensus 296 ~~~~~~~~Nr~~~VeaGaV~~LlelL~~~ 324 (353)
.+. +-..++.+.++++.+++.+.+.
T Consensus 184 LN~----~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 184 LNN----RGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred cCH----HHHHHHHhcChHHHHHHHhCCH
Confidence 986 7788889999999999998653
No 156
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=35.31 E-value=2.3e+02 Score=28.17 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcc
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESF 186 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~ 186 (353)
..++..++.+|.+. .+...++.++-+|..-+. ++..|+.+.+.|++.-++..+...
T Consensus 20 ~Dev~ylld~l~~~---~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~ 75 (361)
T PF07814_consen 20 ADEVEYLLDGLESS---SSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDA 75 (361)
T ss_pred HHHHHHHHhhcccC---CCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccc
Confidence 36788889999732 233445567777777776 456899999999999998888443
No 157
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=34.69 E-value=20 Score=34.12 Aligned_cols=61 Identities=5% Similarity=-0.111 Sum_probs=44.1
Q ss_pred hhhhhhhhhHHhhhccccch--hHHHHHh-HHHHhhc--CCccccccccccCCceecCchhhh-hhhh
Q 018602 46 RHVRLINLAKWLVESAWVAL--RLFQERC-EEELLWA--AEMIKIKAQDLKGKEVKVNTSLLY-QQTK 107 (353)
Q Consensus 46 ~~~~~c~l~~~~m~d~~~~~--~~~~eR~-~~e~~~g--~~tcP~T~q~l~~~~l~pN~~L~i-~~w~ 107 (353)
.-++-||+++.....|+++. +.+|+|= +..++.+ ...||+-+-. .-..+.|-|...+ .-||
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~-~~~~~~~~~l~~d~el~~ 240 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE-NPYYIQPGHLDEDKELQQ 240 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC-ccccccccccCchHHHHH
Confidence 33455999999999999975 8899998 4557777 5568987644 2356788888773 4444
No 158
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=34.33 E-value=4.5e+02 Score=25.59 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC--CCCCC
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS--ASAAD 302 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~--~~~~~ 302 (353)
|.-.+.-|...+.++|++|...|..+.......-.+-+...-++..+.+.++.| .+.-...|++++-=+|.. . +
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~---g 120 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGA---G 120 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCC---C
Confidence 334444456667889999999998876332211122233445788888989888 335555666666666554 2 2
Q ss_pred chHHHHHHcCcHHHHHHHhhhcccc
Q 018602 303 KPIQKFVDMGLVSLLLETLVDAQRS 327 (353)
Q Consensus 303 ~Nr~~~VeaGaV~~LlelL~~~~~~ 327 (353)
.....+.+ ...++|...+.++...
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~ 144 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSAS 144 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccc
Confidence 45666555 4778888888876443
No 159
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.20 E-value=6.8e+02 Score=28.03 Aligned_cols=143 Identities=13% Similarity=0.156 Sum_probs=71.3
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
-||--|.+.++-||.|.+.+...-.+|- ..|.++.......-..+|. +.-+.+.++..+-+ +...+.+
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~-----DiLaqvatntdsskN~GnA-ILYE~V~TI~~I~~-~~~Lrvl----- 313 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMN-----DILAQVATNTDSSKNAGNA-ILYECVRTIMDIRS-NSGLRVL----- 313 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHH-----HHHHHHHhcccccccchhH-HHHHHHHHHHhccC-CchHHHH-----
Confidence 4778888999999999998876666554 3455555432110001233 23333333322211 1111111
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
++..|-++|.+.+-..|--|...|..+...++.....- + ...+.-|++. ++.-++.|+..+|.|.-. .
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-r-----~tIleCL~Dp-D~SIkrralELs~~lvn~-----~ 381 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-R-----STILECLKDP-DVSIKRRALELSYALVNE-----S 381 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-H-----HHHHHHhcCC-cHHHHHHHHHHHHHHhcc-----c
Confidence 45556666666655555556655555543333222111 1 1223344554 556666666666666554 3
Q ss_pred hHHHHHH
Q 018602 304 PIQKFVD 310 (353)
Q Consensus 304 Nr~~~Ve 310 (353)
|...||+
T Consensus 382 Nv~~mv~ 388 (866)
T KOG1062|consen 382 NVRVMVK 388 (866)
T ss_pred cHHHHHH
Confidence 6555443
No 160
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=32.38 E-value=4.9e+02 Score=26.84 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhh
Q 018602 198 LEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLI 275 (353)
Q Consensus 198 ~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~g--s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL 275 (353)
..-+++.|-.|.. .++.+..+...+....++.+|.++ +..-+-+..-.+--|+ ..+...+.+ ..-+.|+.|++++
T Consensus 174 ~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLt-Fn~~~ae~~-~~~~li~~L~~Iv 250 (442)
T KOG2759|consen 174 IQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLT-FNPHAAEKL-KRFDLIQDLSDIV 250 (442)
T ss_pred HHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhh-cCHHHHHHH-hhccHHHHHHHHH
Confidence 3444555554432 356677666666777888888433 5566666666666665 556556677 4448999999999
Q ss_pred cCCCChhHHHHHHHHHHHhhcCCCCCC---chHHHHHHcCcHHHHHHHhh
Q 018602 276 KEPICPTATEASFVVVYHMITSASAAD---KPIQKFVDMGLVSLLLETLV 322 (353)
Q Consensus 276 ~~~~s~~a~k~Al~aL~nLc~~~~~~~---~Nr~~~VeaGaV~~LlelL~ 322 (353)
++..-.+..+-.+.++.|+++..+.+. .....|+..++.+.+-.+..
T Consensus 251 k~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 251 KESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 876555778888999999988642111 24467777776666555443
No 161
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=31.97 E-value=6e+02 Score=27.70 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=57.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
++..|=..+.++ ..|..|..+|-.+....+.+...|+.. .++..|++.|.-..++...-.|+.+|.-|-+.
T Consensus 71 ~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t-~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 71 LFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQT-PLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred HHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcC-hhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 456666667654 578999999999886667778888787 99999999998776888888999999988764
No 162
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=31.61 E-value=3.4e+02 Score=26.89 Aligned_cols=135 Identities=11% Similarity=0.149 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhH-Hhhcc-C-CCcHHHH
Q 018602 152 LVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEA-LTYLG-S-ASSMHCM 228 (353)
Q Consensus 152 Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~-k~~l~-~-~~~l~~L 228 (353)
+-.=||...|...-.|..+-.. ..--+...+... +.++.-+|.+++.-+..-+... -+.+. . ..+....
T Consensus 143 ~g~mlRec~k~e~l~~~iL~~~-~f~~ff~~~~~~-------~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~ 214 (335)
T PF08569_consen 143 CGDMLRECIKHESLAKIILYSE-CFWKFFKYVQLP-------NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKY 214 (335)
T ss_dssp HHHHHHHHTTSHHHHHHHHTSG-GGGGHHHHTTSS-------SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhCcH-HHHHHHHHhcCC-------ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3344555555544455444432 333333444322 5678888888887654333221 11222 2 3478889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhccchHH----HHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 229 VWFLKSGDLSRRRNTVLVLREVISSDHRR----VNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 229 v~~L~~gs~~~R~~Aa~lL~~Lss~~~~~----~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
.++|.++++-+|.++..+|-+|-.. ..+ ..-|++ +.-+..++.+|++. +..-.-.|.++..--...
T Consensus 215 ~~Ll~s~NYvtkrqslkLL~ellld-r~n~~vm~~yi~~-~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 215 NKLLESSNYVTKRQSLKLLGELLLD-RSNFNVMTRYISS-PENLKLMMNLLRDK-SKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHCT-SSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTT--HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-
T ss_pred HHHccCCCeEeehhhHHHHHHHHHc-hhHHHHHHHHHCC-HHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhC
Confidence 9999999999999999999999733 333 245544 48899999999987 766666777776655555
No 163
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.60 E-value=16 Score=36.91 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=37.6
Q ss_pred hhhhHHhhhcccc-chhH-HHHHhHHHHhhcCCccccccccccCCceec
Q 018602 51 INLAKWLVESAWV-ALRL-FQERCEEELLWAAEMIKIKAQDLKGKEVKV 97 (353)
Q Consensus 51 c~l~~~~m~d~~~-~~~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~l~p 97 (353)
|-|+..-..||+. .++. |.=+.+..|+.-+++=|.|+|+|..++|++
T Consensus 43 C~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 43 CSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIK 91 (518)
T ss_pred ceeccccccCcccccCCcEEeeehhhHHHHHcCCCCCCCCcccccccee
Confidence 8888888889984 4444 555568889999999999999999888764
No 164
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=31.48 E-value=2.1e+02 Score=30.56 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHH
Q 018602 152 LVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWF 231 (353)
Q Consensus 152 Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~ 231 (353)
++.-|..+++.=..-|.-+.++.+++.|+++|+...- .+.--+...+.++...-...+.-+.+.++|+.++.+
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei-------mi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~ 481 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI-------MIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL 481 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc-------eeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence 4444555555444556666677777777777765310 111112233444322112233445577899999999
Q ss_pred HhcCCHHHHHHHHHHHHHHhccch--HHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHh-hcCC
Q 018602 232 LKSGDLSRRRNTVLVLREVISSDH--RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM-ITSA 298 (353)
Q Consensus 232 L~~gs~~~R~~Aa~lL~~Lss~~~--~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nL-c~~~ 298 (353)
+.+.+..-|.+..=+|+.|.--.+ +....+.+. | +..++...+++ +-....-.+.+|.|+ |..+
T Consensus 482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Laki-g-~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKI-G-VEKVLSYTNDP-CFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhc-C-HHHHHHHhcCc-ccccHHHHHHHHHhcccccc
Confidence 988888888999999999873322 223444333 3 46677888776 556666789999999 6554
No 165
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.42 E-value=1.3e+02 Score=32.98 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHH
Q 018602 193 EHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLY 272 (353)
Q Consensus 193 ~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV 272 (353)
.++.++--|++.+..+.. +..-+ -....+.+.++.++..+|.-|+..+.++=..+.+ .. ...|++..|.
T Consensus 98 ~np~iR~lAlrtm~~l~v--~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~---~~-~~~gl~~~L~ 166 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRV--DKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD---LV-EDSGLVDALK 166 (734)
T ss_pred CCHHHHHHHhhceeeEee--hHHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh---hc-cccchhHHHH
Confidence 467777777777776521 11111 2467788889999999999988888877433222 22 4459999999
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 273 TLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 273 ~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
+++.+. +|..+-.|+.+|..+...+
T Consensus 167 ~ll~D~-~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 167 DLLSDS-NPMVVANALAALSEIHESH 191 (734)
T ss_pred HHhcCC-CchHHHHHHHHHHHHHHhC
Confidence 999977 8999999999999996543
No 166
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=31.08 E-value=2.4e+02 Score=24.16 Aligned_cols=72 Identities=7% Similarity=0.089 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhCh-hhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 205 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~-~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L 205 (353)
++.++.+.+++.. +++..+..|+.-|-.+.|... .....+++.++...|..++... .+..|++.++.++
T Consensus 40 k~a~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~------~~~~Vk~kil~li 109 (142)
T cd03569 40 KYAMRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTT------KNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHccc------CCHHHHHHHHHHH
Confidence 4566777888855 467788889999999999854 4566677779999999988652 2568899998888
Q ss_pred Hhc
Q 018602 206 TLL 208 (353)
Q Consensus 206 ~~L 208 (353)
...
T Consensus 110 ~~W 112 (142)
T cd03569 110 QAW 112 (142)
T ss_pred HHH
Confidence 765
No 167
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=31.01 E-value=2.2e+02 Score=23.23 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=44.1
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhH-HHHHHHHHHHhhcCC
Q 018602 224 SMHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTA-TEASFVVVYHMITSA 298 (353)
Q Consensus 224 ~l~~Lv~~L~-~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a-~k~Al~aL~nLc~~~ 298 (353)
.+|.+.+.|+ +...+.|..+-.++-.|++...-.. .++..+++-+-....+.. .+.++.+|..+|..+
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-------~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-------EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-------HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4677888888 4577888889888888874433222 344455544322223333 488999999998654
No 168
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=29.83 E-value=2.4e+02 Score=23.86 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhC-hhhhhHHHhcCCHHHHHHHhhcccccccchhHH--HHHHHHH
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKES-ERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVS--VLEEILS 203 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes-~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~--v~E~AL~ 203 (353)
++.+..+.++|.. +++..+..|+.=+-.+.|.+ +..+..+++..|+..|..++.+... +.. |++.++.
T Consensus 41 kea~~~l~krl~~----~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~-----~~~~~Vk~k~l~ 111 (140)
T PF00790_consen 41 KEAARALRKRLKH----GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKT-----DPETPVKEKILE 111 (140)
T ss_dssp HHHHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTT-----HHHSHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCC-----CchhHHHHHHHH
Confidence 3455566777755 46788888999999999987 4566777777899999998876532 222 8888888
Q ss_pred HHHhc
Q 018602 204 TLTLL 208 (353)
Q Consensus 204 ~L~~L 208 (353)
.|...
T Consensus 112 ll~~W 116 (140)
T PF00790_consen 112 LLQEW 116 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 169
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=29.77 E-value=2.8e+02 Score=23.36 Aligned_cols=73 Identities=8% Similarity=0.018 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhCh-hhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 205 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~-~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L 205 (353)
++.++.+.+++.+ +++..+..|+.-+-.+.+.+. .....+.+.++...|..++..... ...|++.++.++
T Consensus 36 k~a~r~l~krl~~----~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~-----~~~Vk~kil~li 106 (133)
T smart00288 36 KDAVRLLKKRLNN----KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP-----LPLVKKRILELI 106 (133)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC-----cHHHHHHHHHHH
Confidence 3456677777864 467888889999999999854 466677778999999988866521 234888888887
Q ss_pred Hhc
Q 018602 206 TLL 208 (353)
Q Consensus 206 ~~L 208 (353)
...
T Consensus 107 ~~W 109 (133)
T smart00288 107 QEW 109 (133)
T ss_pred HHH
Confidence 765
No 170
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=29.37 E-value=9.6 Score=26.21 Aligned_cols=25 Identities=8% Similarity=-0.182 Sum_probs=10.8
Q ss_pred hhhhHHhhhc----cccch-hHHHHHhHHHH
Q 018602 51 INLAKWLVES----AWVAL-RLFQERCEEEL 76 (353)
Q Consensus 51 c~l~~~~m~d----~~~~~-~~~~eR~~~e~ 76 (353)
||+.++ +.+ |++.. |.++-|-.++.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~ 30 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQK 30 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHH
Confidence 788999 777 77654 66554444443
No 171
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=28.99 E-value=7.2e+02 Score=27.29 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHhhcc--CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Q 018602 194 HVSVLEEILSTLTLLFPLAGEALTYLG--SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH 255 (353)
Q Consensus 194 ~~~v~E~AL~~L~~L~~~~~e~k~~l~--~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~ 255 (353)
.+++.-.++.++..+.+.. .-..+- -.+.||++.-+|++.+-+..+|.++++-.++-.++
T Consensus 659 ypEvLgsil~Ai~~I~sv~--~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~p 720 (975)
T COG5181 659 YPEVLGSILKAICSIYSVH--RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSP 720 (975)
T ss_pred cHHHHHHHHHHHHHHhhhh--cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCc
Confidence 3566666666665542211 111121 35789999999999999999999999998874444
No 172
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.49 E-value=1e+03 Score=27.87 Aligned_cols=137 Identities=10% Similarity=0.105 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHhCh-hhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccC---C
Q 018602 147 TGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS---A 222 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~-~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~---~ 222 (353)
..+...++-+..+-+..+ ++...+.. -+.++++. +.. .|...++.|...|..+... .+....++ +
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~EvIL~-~Ke-------~n~~aR~~Af~lL~~i~~i--~~~~d~g~e~~~ 780 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAEHCDLIPK-LIPEVILS-LKE-------VNVKARRNAFALLVFIGAI--QSSLDDGNEPAS 780 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHh-ccc-------ccHHHHhhHHHHHHHHHHH--HhhhcccccchH
Confidence 345566777777777666 22222221 22222222 222 2456788888888776420 00011121 2
Q ss_pred CcHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc---CCCChhHHHHHHHHHHHhhcC
Q 018602 223 SSMHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK---EPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 223 ~~l~~Lv~~L~~g--s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~---~~~s~~a~k~Al~aL~nLc~~ 297 (353)
..|...+.++.-| .-+.+.-|.. |..+...-.+.+..+ +. +.++.+++.+. .+.++.-.++|+..+.-++..
T Consensus 781 ~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~l-d~-~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 781 AILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNIL-DD-ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccc-cH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence 3788888888887 3334444443 665654434556555 43 66666666643 234888999999988888653
No 173
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=27.84 E-value=2.2e+02 Score=27.94 Aligned_cols=77 Identities=8% Similarity=0.081 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCCChhHHhh-ccCCCcHHHHHHHHhcC---CHHHHHHHHHHHHHHhccch---HHHHHhh--hhhch
Q 018602 197 VLEEILSTLTLLFPLAGEALTY-LGSASSMHCMVWFLKSG---DLSRRRNTVLVLREVISSDH---RRVNMFL--EIEGA 267 (353)
Q Consensus 197 v~E~AL~~L~~L~~~~~e~k~~-l~~~~~l~~Lv~~L~~g---s~~~R~~Aa~lL~~Lss~~~---~~~~~IG--~~~ga 267 (353)
++-.|++.|..+.+.....-++ ..+|+++.-|+++++-+ ....|..|..+|..++.... +....+| ..+|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 4555667776654333232333 34788999999999876 46788999999999985432 2333333 34466
Q ss_pred HHHHHH
Q 018602 268 IESLYT 273 (353)
Q Consensus 268 i~~LV~ 273 (353)
+..+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 665554
No 174
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=26.80 E-value=4.3e+02 Score=23.03 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=66.5
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhh-ccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 018602 176 VSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTY-LGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 254 (353)
Q Consensus 176 i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~-l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~ 254 (353)
.+.|.++|+.. .+..++.+++.+|-.|-.+|..-.+. -...+.-. -...+... ..........+...
T Consensus 12 L~~L~~iLk~e------~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-----~~~~~~~~-~~~~l~~~~~~~~~ 79 (160)
T PF11865_consen 12 LDILLNILKTE------QSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-----SENSNDES-TDISLPMMGISPSS 79 (160)
T ss_pred HHHHHHHHHhC------CCHHHHHHHHHHhhhccccCcHHHhcccccCCccc-----cccccccc-hhhHHhhccCCCch
Confidence 35566666554 24678999999998886677443222 22211000 00001110 11111112222122
Q ss_pred hHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhh
Q 018602 255 HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKP 332 (353)
Q Consensus 255 ~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~a 332 (353)
+++... -++..|+++|+|..-..--.+++.++.++.... +.+...... -.|+.++..+.+++.+.-|-.
T Consensus 80 ee~y~~-----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l---~~~cv~~L~-~viP~~l~~i~~~~~~~~e~~ 148 (160)
T PF11865_consen 80 EEYYPT-----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSL---GLKCVPYLP-QVIPIFLRVIRTCPDSLREFY 148 (160)
T ss_pred HHHHHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc---CcCchhHHH-HHhHHHHHHHHhCCHHHHHHH
Confidence 444322 478899999988633333445666666665322 123322222 277888887765544444443
No 175
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=26.68 E-value=2.4e+02 Score=24.48 Aligned_cols=58 Identities=3% Similarity=0.119 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 237 LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 237 ~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
......++.-|+.|..........+ +.++++..|+..|... +++.++.|+..|-.+|.
T Consensus 130 ~~~~~~~l~Clkal~n~~~G~~~v~-~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYGLEAVL-SHPDSVNLIALSLDSP-NIKTRKLALEILAALCL 187 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHH-CSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHH-cCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHC
Confidence 3455667888888875533445566 5569999999999765 88999999999999884
No 176
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=26.62 E-value=3.6e+02 Score=23.14 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhCh-hhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 205 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~-~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L 205 (353)
+..+..+.+++.+ +++..+..|+.-|-.+.+... .....+++.+|..-|+.++.....+. ..+..|++.++.++
T Consensus 37 k~a~rai~krl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~-~~~~~Vk~kil~li 111 (139)
T cd03567 37 QLAVRLLAHKIQS----PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGS-RTSEKVKTKIIELL 111 (139)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCC-CCCHHHHHHHHHHH
Confidence 4566777888865 367788889999999999664 46667788899999999995421000 13578999999888
Q ss_pred Hhc
Q 018602 206 TLL 208 (353)
Q Consensus 206 ~~L 208 (353)
...
T Consensus 112 ~~W 114 (139)
T cd03567 112 YSW 114 (139)
T ss_pred HHH
Confidence 765
No 177
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=25.22 E-value=83 Score=34.99 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=43.8
Q ss_pred chHHHHHHhhcCCC----ChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhc----c----ccchhhhh
Q 018602 266 GAIESLYTLIKEPI----CPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA----Q----RSLCEKPW 333 (353)
Q Consensus 266 gai~~LV~lL~~~~----s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~----~----~~~~E~aL 333 (353)
|.+..|+++|..-. .-......++.|..-|..+ .||.++++.|+++.|++.|..+ . ..++|+.|
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~----~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK----VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH----HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 66677777664311 2234444555666667776 8999999999999999999622 2 45777777
No 178
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.53 E-value=4.2e+02 Score=22.14 Aligned_cols=74 Identities=12% Similarity=0.018 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChh-hhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESER-NKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 205 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~-nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L 205 (353)
++.++.|.+++.. +++..+..|+.=|-.+.+.+.. .+..+++..+..-|+.++.... ..+.+|++.++..+
T Consensus 36 k~a~raL~krl~~----~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~----~~~~~Vk~kil~ll 107 (133)
T cd03561 36 KEAARAIRKKIKY----GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSP----KYDPKVREKALELI 107 (133)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCC----CCCHHHHHHHHHHH
Confidence 3456667777754 3678888899999999998865 6666777677777888886541 12567889998888
Q ss_pred Hhc
Q 018602 206 TLL 208 (353)
Q Consensus 206 ~~L 208 (353)
...
T Consensus 108 ~~W 110 (133)
T cd03561 108 LAW 110 (133)
T ss_pred HHH
Confidence 765
No 179
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=24.14 E-value=3.3e+02 Score=26.67 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC--CCChhHHHHHHHHHHHhhcCC
Q 018602 237 LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE--PICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 237 ~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~--~~s~~a~k~Al~aL~nLc~~~ 298 (353)
...|..|.+.+..+.......-..+-.-++++..|+++|+- ++.....-+|+.+|-.++..+
T Consensus 236 l~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 236 LQIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 45678888888777633222223332334699999999974 355677888999999998753
No 180
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.68 E-value=52 Score=35.63 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
=-.+|+=|.-.-++.|.+|+.-+.+|+-.++. -+..++..||++++++ .......|+.+|..++.+
T Consensus 375 CGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~------FA~~aldfLvDMfNDE-~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 375 CGALVHGLEDEFYEVRRAAVASLCSLATSSPG------FAVRALDFLVDMFNDE-IEVVRLKAIFALTMISVH 440 (823)
T ss_pred cceeeeechHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence 34444444444579999999999999843332 2236799999999987 445666777777777543
No 181
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=23.55 E-value=3e+02 Score=29.07 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhccch--HHHHHhhhhhchHHHHHHhhcCCCChh------HHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 018602 239 RRRNTVLVLREVISSDH--RRVNMFLEIEGAIESLYTLIKEPICPT------ATEASFVVVYHMITSASAADKPIQKFVD 310 (353)
Q Consensus 239 ~R~~Aa~lL~~Lss~~~--~~~~~IG~~~gai~~LV~lL~~~~s~~------a~k~Al~aL~nLc~~~~~~~~Nr~~~Ve 310 (353)
-|.-++++|--.++..+ ...+++ ..||-|..++..++++. -..++-.+|+.++.+. +--..++.
T Consensus 79 y~~i~itvLacFC~~pElAsh~~~v----~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e----~G~~~Lia 150 (698)
T KOG2611|consen 79 YLQISITVLACFCRVPELASHEEMV----SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE----AGLMTLIA 150 (698)
T ss_pred HHHHHHHHHHHHhCChhhccCHHHH----HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC----chhHHHHh
Confidence 34667777766654422 356666 45888999988766665 8899999999999886 77888999
Q ss_pred cCcHHHHHHHh
Q 018602 311 MGLVSLLLETL 321 (353)
Q Consensus 311 aGaV~~LlelL 321 (353)
.|.|+.+-++-
T Consensus 151 ~G~~~~~~Q~y 161 (698)
T KOG2611|consen 151 SGGLRVIAQMY 161 (698)
T ss_pred cCchHHHHHHH
Confidence 99999988654
No 182
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.43 E-value=3.9e+02 Score=23.00 Aligned_cols=72 Identities=8% Similarity=0.050 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChh-hhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESER-NKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 205 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~-nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L 205 (353)
+..++.+.+++.+ .++..+..|+.-|-.+.|.+.. ....+++.+|+..|+.++... .+..|++.++..+
T Consensus 36 k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~------~~~~Vk~kil~li 105 (144)
T cd03568 36 KDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR------VHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc------CCHHHHHHHHHHH
Confidence 4566777888854 4678888899999999998774 555677778999999998664 2568899998888
Q ss_pred Hhc
Q 018602 206 TLL 208 (353)
Q Consensus 206 ~~L 208 (353)
..+
T Consensus 106 ~~W 108 (144)
T cd03568 106 KQW 108 (144)
T ss_pred HHH
Confidence 765
No 183
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=23.32 E-value=3.8e+02 Score=29.28 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHHHhcCCCC-hhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 018602 203 STLTLLFPLA-GEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISS 253 (353)
Q Consensus 203 ~~L~~L~~~~-~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~ 253 (353)
.+|-.++..+ ++.+.++.++++...++..|-+++.+.++.|..+|++.+..
T Consensus 503 ~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 503 QILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred HHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 4555554334 44567788899999999999999999999999999999743
No 184
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=22.30 E-value=4.1e+02 Score=23.83 Aligned_cols=125 Identities=10% Similarity=0.112 Sum_probs=46.3
Q ss_pred hhhHHHhcCCHHHHHHHhhcccccc-----------cchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhc
Q 018602 166 NKRCIVDYGAVSVLAAAFESFSKTC-----------LDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKS 234 (353)
Q Consensus 166 nR~~i~~aG~i~~Lv~~L~s~~~~~-----------~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~ 234 (353)
+.+.|.+.|+...++.+|...-... ...-.++...+...|..++-...+|+..+.. .++.++..+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHH
Confidence 3446788899999999996642211 0011345666777787776555677777653 23333333333
Q ss_pred CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC-CCChhHHHHHHHHHHHhhcCC
Q 018602 235 GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE-PICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 235 gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~-~~s~~a~k~Al~aL~nLc~~~ 298 (353)
.....-..++.+|.++-....+....+.+ .-|..++++++. +.+|+ =+..|-.+|...
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e--~~I~~~i~ll~~~gr~~~----~L~~L~~lc~~~ 171 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISE--EHIEKFIELLRKHGRQPR----YLDFLSSLCVCN 171 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT----------------------------------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhH--HHHHHHHHHHHHcCCChH----HHHHHhhhcccC
Confidence 22222245677777775444566666644 358999999976 43333 567788888763
No 185
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=22.23 E-value=1.7e+02 Score=28.28 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=43.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCC-CChhHHHHHHHHHHHhhcCCCCCC
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEP-ICPTATEASFVVVYHMITSASAAD 302 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~-~s~~a~k~Al~aL~nLc~~~~~~~ 302 (353)
.|..++.-|.-.+.--|+.++-++=.| .++-+|+.|.+.|.+. .+|-....|+.||-++..-.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl------------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~---- 251 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQL------------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED---- 251 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhc------------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH----
Confidence 455555555444444444444443332 2235778888777643 46666777777777765532
Q ss_pred chHHHHHHcCcHHHHHHHhhhccc
Q 018602 303 KPIQKFVDMGLVSLLLETLVDAQR 326 (353)
Q Consensus 303 ~Nr~~~VeaGaV~~LlelL~~~~~ 326 (353)
++++|.+.+.|.++
T Consensus 252 ----------~~~vL~e~~~D~~~ 265 (289)
T KOG0567|consen 252 ----------CVEVLKEYLGDEER 265 (289)
T ss_pred ----------HHHHHHHHcCCcHH
Confidence 55667777766544
No 186
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=21.89 E-value=1.6e+02 Score=33.48 Aligned_cols=136 Identities=11% Similarity=0.133 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHhcCCCChhHHhhccC--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHH
Q 018602 192 DEHVSVLEEILSTLTLLFPLAGEALTYLGS--ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIE 269 (353)
Q Consensus 192 ~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~--~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~ 269 (353)
+.+.+|.|.|++.+-.+ -..-...+.. +.+++-+++=|++.- +|..|+.++.-+. .++-....+-.-..+++
T Consensus 581 d~DqeVkeraIscmgq~---i~~fgD~l~~eL~~~L~il~eRl~nEi--TRl~AvkAlt~Ia-~S~l~i~l~~~l~~il~ 654 (1233)
T KOG1824|consen 581 DSDQEVKERAISCMGQI---IANFGDFLGNELPRTLPILLERLGNEI--TRLTAVKALTLIA-MSPLDIDLSPVLTEILP 654 (1233)
T ss_pred cccHHHHHHHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHHhchh--HHHHHHHHHHHHH-hccceeehhhhHHHHHH
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh-ccCC
Q 018602 270 SLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-VFST 337 (353)
Q Consensus 270 ~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-L~~~ 337 (353)
.|++.++.. .-......+.++..|..+. +.+...-.-.-++..+-.++.+.+..+++.++ +++|
T Consensus 655 ~l~~flrK~-~r~lr~~~l~a~~~L~~~~---~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 655 ELASFLRKN-QRALRLATLTALDKLVKNY---SDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTT 719 (1233)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
No 187
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=21.64 E-value=1e+02 Score=22.13 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=24.8
Q ss_pred cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 173 YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 173 aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
+++.+.|.++|...... -++++++..+.+|.+|
T Consensus 14 ~~Fp~~L~~lL~~~~~~---L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 14 KDFPQELIDLLRNHHTV---LDPDLRMKLVKALILL 46 (52)
T ss_pred HHHHHHHHHHHHhcccc---CCHHHHHHHHHHHHHH
Confidence 36788889999776433 2578888888888877
No 188
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.57 E-value=4.6e+02 Score=29.03 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=63.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
.-+-++-+|++..+..|.-|+.+++.+- -.+-+.+ + ..++-|+.=|.++ +|...-+|..++..|+.-. .+
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvF---LkYPeAl-r--~~FprL~EkLeDp-Dp~V~SAAV~VICELArKn---Pk 214 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVF---LKYPEAL-R--PCFPRLVEKLEDP-DPSVVSAAVSVICELARKN---PQ 214 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHH---HhhhHhH-h--hhHHHHHHhccCC-CchHHHHHHHHHHHHHhhC---Cc
Confidence 3455677788888899999999999985 3455566 3 5799999999888 9999999999999997632 24
Q ss_pred hHHHHHHcCcHHHHHHHhhhc
Q 018602 304 PIQKFVDMGLVSLLLETLVDA 324 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~ 324 (353)
|--. .-|.+.++|++.
T Consensus 215 nyL~-----LAP~ffkllttS 230 (877)
T KOG1059|consen 215 NYLQ-----LAPLFYKLLVTS 230 (877)
T ss_pred cccc-----ccHHHHHHHhcc
Confidence 5444 335566666543
No 189
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=21.42 E-value=4.2e+02 Score=27.99 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCC--hhHHhhccCCCcHHH
Q 018602 150 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLA--GEALTYLGSASSMHC 227 (353)
Q Consensus 150 ~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~--~e~k~~l~~~~~l~~ 227 (353)
+..+.-|-.+-|.+++.-.-++++|.+..++--.... ++.+...+.-+|.|.. ++ .+.++.|.+...-..
T Consensus 240 R~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt-------~P~lLRH~ALAL~N~~-L~~~~a~qrrmveKr~~EW 311 (832)
T KOG3678|consen 240 RSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRT-------DPALLRHCALALGNCA-LHGGQAVQRRMVEKRAAEW 311 (832)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccC-------CHHHHHHHHHHhhhhh-hhchhHHHHHHHHhhhhhh
Confidence 3344445555555555555566666665544333322 2455555444555432 22 445555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccch--HHHHHhhhhhchHHHHHHhh
Q 018602 228 MVWFLKSGDLSRRRNTVLVLREVISSDH--RRVNMFLEIEGAIESLYTLI 275 (353)
Q Consensus 228 Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~--~~~~~IG~~~gai~~LV~lL 275 (353)
+.-+-.+.+--.|.+|+.....|.+..+ ...+.-|.- ..+++||..+
T Consensus 312 LF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~Tl-aLVEPlva~~ 360 (832)
T KOG3678|consen 312 LFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTL-ALVEPLVASL 360 (832)
T ss_pred hhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccch-hhhhhhhhcc
Confidence 5554445566677777777776654322 112222222 3556666555
No 190
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.22 E-value=1.2e+03 Score=26.20 Aligned_cols=51 Identities=22% Similarity=0.110 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 018602 147 TGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 209 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~ 209 (353)
.-|.--++.||..+...+.-|. -+|+.+..+|.+.+ ..+.-+|-.+|..|+
T Consensus 221 ~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~sts-------saV~fEaa~tlv~lS 271 (948)
T KOG1058|consen 221 SLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTS-------SAVIFEAAGTLVTLS 271 (948)
T ss_pred HHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCC-------chhhhhhcceEEEcc
Confidence 4455577888888876654333 35788888886652 345656656666663
No 191
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.88 E-value=2e+02 Score=23.67 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=31.2
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc
Q 018602 267 AIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM 311 (353)
Q Consensus 267 ai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea 311 (353)
+|+-||+=|.|. ++.-...|+.+|+..|..+ .+...++..
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~----~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDK----EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhch----hhHHHHHHc
Confidence 577888888877 7888999999999999875 455555543
No 192
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=20.86 E-value=4.1e+02 Score=25.38 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-HHHHH-------hhhhh
Q 018602 194 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH-RRVNM-------FLEIE 265 (353)
Q Consensus 194 ~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~-~~~~~-------IG~~~ 265 (353)
+..+++.|+..|-..+-++.+. ....++.+...+++++...|..|...++.+...-+ ..... .+. .
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~-~ 113 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS-K 113 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH-h
Confidence 4578999998877654444321 12356777788888888888888888888763322 11111 212 2
Q ss_pred chHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 266 GAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 266 gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
.++..+.+.+.+. ++...-.|...+.-|-..
T Consensus 114 ~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 114 SLLKILTKFLDSE-NPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 5666777777655 666666666666666544
No 193
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=20.80 E-value=7.4e+02 Score=27.82 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccch---HHHHHhhhhhchHHHH
Q 018602 195 VSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH---RRVNMFLEIEGAIESL 271 (353)
Q Consensus 195 ~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~---~~~~~IG~~~gai~~L 271 (353)
..+++.++.++....+ .-.-...++.+...+++|++..|.....++-......+ ..+..+ .++++.+
T Consensus 350 ~~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~---~~l~p~~ 419 (815)
T KOG1820|consen 350 SELRDALLKALDAILN-------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV---KTLVPHL 419 (815)
T ss_pred HHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH---HHHhHHH
Confidence 4566666666654422 01123467888889999999999886666554432222 122333 5788888
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 272 YTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 272 V~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
+...+|. +..-.++|+.++-.+--
T Consensus 420 ~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 420 IKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred hhhccCC-cHHHHHHHHHHHHHHHH
Confidence 8888776 66777778777776643
Done!