Query 018602
Match_columns 353
No_of_seqs 227 out of 659
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:11:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tt9_A Plakophilin-2; cell adh 99.8 6E-18 2.1E-22 156.7 16.2 179 129-324 9-206 (233)
2 4db6_A Armadillo repeat protei 99.8 6.2E-17 2.1E-21 143.3 19.1 178 144-333 24-201 (210)
3 3nmw_A APC variant protein; AR 99.7 3.1E-17 1.1E-21 160.5 15.6 197 147-349 47-264 (354)
4 3nmw_A APC variant protein; AR 99.7 8.7E-17 3E-21 157.3 17.1 192 146-348 98-305 (354)
5 4hxt_A De novo protein OR329; 99.7 3.3E-16 1.1E-20 141.0 19.6 203 129-347 3-211 (252)
6 4db8_A Armadillo-repeat protei 99.7 3.9E-16 1.3E-20 141.7 19.7 203 129-347 13-221 (252)
7 1xm9_A Plakophilin 1; armadill 99.7 2.1E-16 7.1E-21 158.6 18.1 186 130-333 4-212 (457)
8 3nmz_A APC variant protein; pr 99.7 4.4E-16 1.5E-20 157.3 15.2 194 149-349 165-380 (458)
9 3l6x_A Catenin delta-1; cateni 99.7 2.3E-15 7.7E-20 156.1 19.4 191 126-333 46-262 (584)
10 3nmz_A APC variant protein; pr 99.7 1.2E-15 4.2E-20 154.0 16.5 192 147-348 215-421 (458)
11 4db8_A Armadillo-repeat protei 99.6 5.6E-15 1.9E-19 134.1 17.6 186 131-333 57-243 (252)
12 4hxt_A De novo protein OR329; 99.6 1.4E-14 4.6E-19 130.4 18.8 188 130-333 46-233 (252)
13 3tt9_A Plakophilin-2; cell adh 99.6 1.6E-15 5.6E-20 140.3 10.3 166 175-351 9-196 (233)
14 1xqr_A HSPBP1 protein; armadil 99.6 1.1E-13 3.8E-18 132.1 18.6 176 145-333 53-230 (296)
15 3ul1_B Importin subunit alpha- 99.6 4.7E-14 1.6E-18 143.1 16.6 206 129-349 58-274 (510)
16 3now_A UNC-45 protein, SD10334 99.5 3.9E-13 1.3E-17 143.8 20.0 191 144-346 433-662 (810)
17 4b8j_A Importin subunit alpha- 99.5 2.6E-13 8.8E-18 136.8 17.6 200 128-342 74-279 (528)
18 1xm9_A Plakophilin 1; armadill 99.5 1.5E-13 5.2E-18 137.7 15.3 163 175-350 3-186 (457)
19 1jdh_A Beta-catenin; beta-cate 99.5 2.7E-13 9.3E-18 135.2 15.6 189 129-333 60-248 (529)
20 4db6_A Armadillo repeat protei 99.5 4.5E-13 1.5E-17 118.3 15.2 163 173-347 11-179 (210)
21 3tpo_A Importin subunit alpha- 99.5 1.5E-12 5.1E-17 132.4 20.5 179 144-333 263-441 (529)
22 2z6h_A Catenin beta-1, beta-ca 99.5 7.1E-13 2.4E-17 137.6 17.0 189 129-333 57-245 (644)
23 3l6x_A Catenin delta-1; cateni 99.5 4.7E-13 1.6E-17 138.7 14.7 167 172-351 46-237 (584)
24 3ul1_B Importin subunit alpha- 99.4 1.9E-12 6.6E-17 131.2 17.6 179 144-333 244-422 (510)
25 3tpo_A Importin subunit alpha- 99.4 2.7E-12 9.3E-17 130.4 17.3 204 130-348 121-335 (529)
26 1jdh_A Beta-catenin; beta-cate 99.4 4.4E-12 1.5E-16 126.5 18.0 203 129-348 18-227 (529)
27 2z6g_A B-catenin; FULL-length, 99.4 2.1E-12 7.2E-17 137.8 15.6 195 129-348 116-318 (780)
28 1wa5_B Importin alpha subunit; 99.4 9.5E-12 3.3E-16 125.6 19.2 203 130-347 89-298 (530)
29 2z6h_A Catenin beta-1, beta-ca 99.4 7.4E-12 2.5E-16 129.9 18.1 203 129-348 15-224 (644)
30 4b8j_A Importin subunit alpha- 99.4 1.2E-11 4.1E-16 124.6 18.0 201 130-346 119-326 (528)
31 2z6g_A B-catenin; FULL-length, 99.4 1.2E-11 4.1E-16 131.9 17.6 189 129-333 193-381 (780)
32 3now_A UNC-45 protein, SD10334 99.3 1.1E-11 3.9E-16 132.5 15.9 192 144-350 507-709 (810)
33 2jdq_A Importin alpha-1 subuni 99.3 3.9E-11 1.3E-15 116.9 18.0 188 130-333 66-255 (450)
34 1wa5_B Importin alpha subunit; 99.3 5.1E-11 1.7E-15 120.3 18.5 190 145-346 144-339 (530)
35 2jdq_A Importin alpha-1 subuni 99.3 1.4E-10 4.9E-15 112.9 19.3 190 129-333 193-382 (450)
36 1xqr_A HSPBP1 protein; armadil 99.3 1.5E-10 5.3E-15 110.3 17.1 147 144-298 94-240 (296)
37 3opb_A SWI5-dependent HO expre 99.2 1.2E-11 4E-16 131.1 9.9 172 166-346 449-646 (778)
38 2kr4_A Ubiquitin conjugation f 99.2 9.1E-13 3.1E-17 103.2 -0.1 64 42-108 11-78 (85)
39 2kre_A Ubiquitin conjugation f 99.2 1.9E-12 6.6E-17 104.5 0.5 64 42-108 26-93 (100)
40 1wgm_A Ubiquitin conjugation f 99.2 2.2E-12 7.6E-17 103.8 0.8 64 42-108 19-87 (98)
41 3m62_A Ubiquitin conjugation f 99.1 1.1E-11 3.8E-16 133.0 0.7 66 40-108 886-956 (968)
42 2bay_A PRE-mRNA splicing facto 99.1 4.7E-12 1.6E-16 93.2 -1.9 54 48-101 3-59 (61)
43 3grl_A General vesicular trans 99.0 4.1E-09 1.4E-13 109.5 16.8 197 120-333 13-233 (651)
44 2f42_A STIP1 homology and U-bo 99.0 6.1E-11 2.1E-15 105.3 1.0 67 39-108 100-171 (179)
45 3opb_A SWI5-dependent HO expre 98.9 2.3E-08 7.9E-13 106.1 15.6 162 147-322 349-555 (778)
46 2yu4_A E3 SUMO-protein ligase 98.7 6.6E-10 2.2E-14 88.3 -1.9 61 48-108 7-81 (94)
47 2c2l_A CHIP, carboxy terminus 98.6 5E-09 1.7E-13 97.4 -0.2 66 40-108 203-273 (281)
48 1t1h_A Gspef-atpub14, armadill 98.3 8.3E-08 2.8E-12 72.8 0.6 65 41-108 4-73 (78)
49 3grl_A General vesicular trans 98.0 3.7E-05 1.3E-09 80.0 13.0 142 170-322 118-264 (651)
50 3htk_C E3 SUMO-protein ligase 98.0 7E-07 2.4E-11 83.3 -0.5 70 41-110 174-252 (267)
51 4gmo_A Putative uncharacterize 97.7 0.00014 4.7E-09 76.4 11.6 169 129-313 35-228 (684)
52 3ltj_A Alpharep-4; protein eng 97.5 0.0032 1.1E-07 54.4 15.9 58 224-294 108-165 (201)
53 3ltm_A Alpha-REP4; protein eng 97.5 0.0025 8.4E-08 55.6 14.4 83 224-333 113-195 (211)
54 3ltj_A Alpharep-4; protein eng 97.1 0.011 3.6E-07 51.0 13.8 126 124-295 10-135 (201)
55 3ltm_A Alpha-REP4; protein eng 97.1 0.011 3.8E-07 51.4 13.9 121 128-294 19-139 (211)
56 4gmo_A Putative uncharacterize 96.7 0.0027 9.3E-08 66.5 8.0 162 174-348 35-227 (684)
57 3ztg_A E3 ubiquitin-protein li 96.4 0.00074 2.5E-08 52.2 1.1 59 50-108 15-81 (92)
58 1oyz_A Hypothetical protein YI 96.4 0.095 3.3E-06 47.4 15.4 117 145-295 104-220 (280)
59 1oyz_A Hypothetical protein YI 96.2 0.11 3.9E-06 46.9 14.7 79 224-327 129-207 (280)
60 3dad_A FH1/FH2 domain-containi 95.8 0.37 1.3E-05 46.3 16.7 182 128-322 118-315 (339)
61 1te4_A Conserved protein MTH18 95.7 0.043 1.5E-06 44.4 8.3 88 175-293 43-130 (131)
62 2qk2_A LP04448P; mini spindles 95.4 0.2 6.9E-06 44.5 12.4 167 144-333 27-197 (242)
63 4fdd_A Transportin-1; heat rep 94.4 0.28 9.5E-06 51.8 12.4 168 130-321 130-308 (852)
64 3b2a_A TON_1937, putative unch 94.3 0.57 2E-05 43.1 12.4 149 129-298 72-220 (265)
65 1b3u_A Protein (protein phosph 94.1 0.25 8.5E-06 48.8 10.7 121 194-329 454-575 (588)
66 2qk2_A LP04448P; mini spindles 94.1 0.73 2.5E-05 40.8 12.8 131 147-297 72-206 (242)
67 4fdd_A Transportin-1; heat rep 94.0 0.51 1.8E-05 49.7 13.4 171 145-333 103-277 (852)
68 3dad_A FH1/FH2 domain-containi 94.0 0.58 2E-05 44.9 12.4 121 198-323 135-265 (339)
69 2qk1_A Protein STU2; STU2P, XM 93.8 0.39 1.3E-05 43.6 10.6 172 145-333 29-212 (249)
70 2y43_A E3 ubiquitin-protein li 93.6 0.016 5.4E-07 45.3 0.7 61 48-108 22-87 (99)
71 3fl2_A E3 ubiquitin-protein li 93.6 0.013 4.3E-07 47.9 -0.0 61 48-108 52-118 (124)
72 1b3u_A Protein (protein phosph 93.3 1.6 5.3E-05 42.9 14.8 160 144-324 176-336 (588)
73 2vgl_B AP-2 complex subunit be 93.2 0.41 1.4E-05 48.7 10.5 161 144-322 133-293 (591)
74 2vgl_B AP-2 complex subunit be 92.6 0.77 2.6E-05 46.7 11.7 93 194-298 99-191 (591)
75 1z6u_A NP95-like ring finger p 92.4 0.034 1.2E-06 47.2 0.9 61 48-108 78-144 (150)
76 2qk1_A Protein STU2; STU2P, XM 92.2 3 0.0001 37.6 13.9 138 147-296 76-220 (249)
77 1w63_A Adapter-related protein 92.0 3.5 0.00012 42.1 15.8 155 145-328 247-401 (618)
78 2fv2_A RCD1 required for cell 92.0 4.2 0.00014 37.6 14.5 147 148-298 72-226 (268)
79 1te4_A Conserved protein MTH18 91.2 0.37 1.3E-05 38.7 5.9 78 224-328 43-120 (131)
80 1w63_A Adapter-related protein 90.9 1.2 4E-05 45.7 10.8 111 194-323 120-230 (618)
81 2ckl_A Polycomb group ring fin 90.5 0.057 2E-06 42.7 0.4 61 48-108 15-84 (108)
82 1ibr_B P95, importin beta-1 su 90.4 1.3 4.4E-05 42.1 10.0 172 145-333 230-429 (462)
83 2bpt_A Importin beta-1 subunit 90.0 6.4 0.00022 40.6 15.6 151 126-297 2-165 (861)
84 1ibr_B P95, importin beta-1 su 89.5 5.3 0.00018 37.7 13.5 73 222-296 127-203 (462)
85 1u6g_C TIP120 protein, CAND1; 87.9 3.6 0.00012 45.2 12.4 153 128-296 6-163 (1230)
86 2ecw_A Tripartite motif-contai 87.4 0.15 5.2E-06 37.8 0.8 54 49-102 20-81 (85)
87 3hct_A TNF receptor-associated 87.2 0.078 2.7E-06 42.7 -1.0 60 49-108 19-83 (118)
88 2egp_A Tripartite motif-contai 86.1 0.082 2.8E-06 39.0 -1.3 54 49-102 13-75 (79)
89 1qgr_A Protein (importin beta 85.8 18 0.0006 37.4 15.8 172 145-333 230-429 (876)
90 2csy_A Zinc finger protein 183 85.4 0.14 4.9E-06 38.1 -0.3 54 48-102 15-70 (81)
91 3eg5_B Protein diaphanous homo 84.7 19 0.00066 34.7 14.5 165 151-319 86-272 (383)
92 3b2a_A TON_1937, putative unch 84.5 5.9 0.0002 36.4 9.9 162 143-333 44-210 (265)
93 2f31_A Diaphanous protein homo 84.5 22 0.00074 31.7 15.0 167 151-321 20-208 (233)
94 2vgl_A Adaptor protein complex 84.1 29 0.00098 35.4 16.3 94 224-333 112-208 (621)
95 1jm7_B BARD1, BRCA1-associated 84.0 0.11 3.8E-06 41.8 -1.6 58 49-108 23-85 (117)
96 2ecv_A Tripartite motif-contai 83.5 0.22 7.5E-06 36.9 -0.0 54 49-102 20-81 (85)
97 2bpt_A Importin beta-1 subunit 82.7 18 0.00061 37.2 14.2 115 174-296 324-440 (861)
98 1qgr_A Protein (importin beta 82.4 7.2 0.00025 40.3 11.0 131 148-296 344-479 (876)
99 2ckl_B Ubiquitin ligase protei 82.1 0.3 1E-05 41.5 0.3 61 48-108 54-121 (165)
100 1jm7_A BRCA1, breast cancer ty 81.8 0.34 1.2E-05 38.0 0.5 60 48-107 21-87 (112)
101 3ebb_A Phospholipase A2-activa 81.7 26 0.00087 32.8 13.6 109 197-311 164-274 (304)
102 3ng2_A RNF4, snurf, ring finge 80.3 0.43 1.5E-05 34.2 0.6 50 50-99 12-70 (71)
103 3hcs_A TNF receptor-associated 79.3 0.33 1.1E-05 41.4 -0.4 59 49-107 19-82 (170)
104 3lrq_A E3 ubiquitin-protein li 76.3 0.6 2.1E-05 36.3 0.3 58 49-106 23-85 (100)
105 2djb_A Polycomb group ring fin 75.9 0.84 2.9E-05 33.0 1.0 52 48-99 15-69 (72)
106 1x5b_A Signal transducing adap 75.2 13 0.00044 31.6 8.5 72 224-296 53-125 (163)
107 3tjz_B Coatomer subunit gamma; 73.9 31 0.0011 33.0 11.9 91 194-298 117-207 (355)
108 2bnx_A Diaphanous protein homo 73.5 66 0.0023 30.9 14.3 166 151-320 24-211 (386)
109 2vgl_A Adaptor protein complex 73.4 13 0.00044 38.0 9.6 92 194-297 124-217 (621)
110 3l11_A E3 ubiquitin-protein li 72.8 0.38 1.3E-05 38.3 -1.7 62 47-108 14-87 (115)
111 1u6g_C TIP120 protein, CAND1; 72.4 43 0.0015 36.5 14.1 158 145-323 61-224 (1230)
112 2iw3_A Elongation factor 3A; a 71.3 17 0.00058 39.7 10.2 131 150-298 70-206 (986)
113 4ffb_C Protein STU2; tubulin f 71.3 44 0.0015 29.8 11.8 173 145-333 22-204 (278)
114 4ayc_A E3 ubiquitin-protein li 70.1 0.89 3E-05 37.4 -0.1 44 50-93 55-100 (138)
115 2ecy_A TNF receptor-associated 68.6 1.3 4.4E-05 31.3 0.5 46 49-94 16-64 (66)
116 2of3_A ZYG-9; multifunctional 67.5 39 0.0013 31.0 10.5 111 175-309 133-246 (266)
117 3tjz_B Coatomer subunit gamma; 67.0 89 0.003 29.7 14.9 93 224-333 105-197 (355)
118 2xeu_A Ring finger protein 4; 65.5 1.4 4.9E-05 30.5 0.2 49 51-99 6-63 (64)
119 1juq_A ADP-ribosylation factor 65.3 26 0.00089 29.9 8.3 72 224-296 51-128 (171)
120 3ldz_A STAM-1, signal transduc 65.2 22 0.00075 29.3 7.6 70 224-295 43-113 (140)
121 3g2s_A C-terminal fragment of 65.2 32 0.0011 28.7 8.7 72 224-296 49-126 (149)
122 1rmd_A RAG1; V(D)J recombinati 65.2 1.3 4.6E-05 35.0 0.0 51 48-98 23-76 (116)
123 1mhq_A ADP-ribosylation factor 64.8 33 0.0011 28.5 8.7 73 223-296 38-116 (148)
124 2iw3_A Elongation factor 3A; a 64.3 1.4E+02 0.0048 32.5 15.6 148 131-294 136-322 (986)
125 3zyq_A Hepatocyte growth facto 61.9 22 0.00074 31.7 7.5 73 223-296 45-118 (226)
126 2yur_A Retinoblastoma-binding 59.7 1.4 4.7E-05 32.1 -0.8 43 49-91 16-63 (74)
127 1dvp_A HRS, hepatocyte growth 55.7 31 0.0011 30.3 7.4 71 224-295 43-114 (220)
128 2of3_A ZYG-9; multifunctional 52.8 72 0.0025 29.2 9.5 162 145-333 59-228 (266)
129 2ysl_A Tripartite motif-contai 51.6 2.9 0.0001 29.8 -0.1 47 49-95 21-72 (73)
130 4ap4_A E3 ubiquitin ligase RNF 49.7 4.2 0.00014 32.2 0.5 52 50-101 9-69 (133)
131 1g25_A CDK-activating kinase a 46.0 4.9 0.00017 28.1 0.3 50 50-99 5-62 (65)
132 1elk_A Target of MYB1; superhe 43.0 1.1E+02 0.0036 25.5 8.4 71 224-295 54-129 (157)
133 4ffb_C Protein STU2; tubulin f 42.2 1.5E+02 0.0052 26.1 10.0 135 147-298 70-214 (278)
134 3eg5_B Protein diaphanous homo 42.0 1.2E+02 0.0041 29.0 9.7 59 238-298 135-193 (383)
135 2f31_A Diaphanous protein homo 40.2 1.2E+02 0.0041 26.7 8.8 59 238-298 69-127 (233)
136 3knv_A TNF receptor-associated 39.9 5.2 0.00018 33.1 -0.4 42 49-90 32-76 (141)
137 4ady_A RPN2, 26S proteasome re 36.2 2.1E+02 0.0073 31.0 11.2 33 266-298 611-643 (963)
138 1wa5_C Importin alpha RE-expor 35.8 4.1E+02 0.014 27.9 14.4 107 174-296 35-152 (960)
139 2ea6_A Ring finger protein 4; 34.4 8.9 0.0003 26.6 0.1 44 49-92 16-68 (69)
140 2d8t_A Dactylidin, ring finger 30.5 3.4 0.00012 29.5 -2.7 47 48-94 15-63 (71)
141 3zyq_A Hepatocyte growth facto 30.2 1.6E+02 0.0054 25.9 7.8 107 129-251 8-117 (226)
142 3u0r_A Apoptosis inhibitor 5; 29.1 1.4E+02 0.0047 30.0 7.7 73 233-322 38-110 (507)
143 2ysj_A Tripartite motif-contai 29.0 10 0.00035 26.1 -0.3 37 49-85 21-62 (63)
144 3u0r_A Apoptosis inhibitor 5; 27.6 3.2E+02 0.011 27.4 10.1 48 150-210 28-75 (507)
145 2bnx_A Diaphanous protein homo 27.1 1.8E+02 0.0062 27.7 8.2 59 238-298 73-131 (386)
146 2ct2_A Tripartite motif protei 26.5 17 0.00057 26.5 0.5 54 49-102 16-81 (88)
147 1ho8_A Vacuolar ATP synthase s 26.5 99 0.0034 30.9 6.2 52 150-208 423-474 (480)
148 2ect_A Ring finger protein 126 25.5 31 0.0011 24.6 1.8 51 49-99 16-71 (78)
149 1x5b_A Signal transducing adap 24.8 1.8E+02 0.0063 24.2 6.9 71 128-208 52-123 (163)
150 1dvp_A HRS, hepatocyte growth 24.3 2.2E+02 0.0077 24.6 7.7 106 130-251 6-114 (220)
151 2l9b_A MRNA 3'-END-processing 23.7 2.7E+02 0.0093 22.0 7.1 41 126-173 37-79 (109)
152 3ldz_A STAM-1, signal transduc 23.2 1.2E+02 0.0042 24.6 5.3 70 175-251 43-113 (140)
153 1upk_A MO25 protein; transfera 21.9 5.1E+02 0.018 24.5 10.7 131 156-297 147-284 (341)
154 4ady_A RPN2, 26S proteasome re 21.1 3.1E+02 0.011 29.8 9.2 68 220-296 608-676 (963)
155 1juq_A ADP-ribosylation factor 21.0 2.2E+02 0.0074 24.0 6.6 77 127-208 49-126 (171)
156 4ap4_A E3 ubiquitin ligase RNF 20.5 47 0.0016 25.8 2.1 49 51-99 75-132 (133)
No 1
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.77 E-value=6e-18 Score=156.71 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=151.0
Q ss_pred HHHHHHHHHHhccCCCCh--hhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 018602 129 EVLEINSKITAACKSEDQ--TGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 206 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~--~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~ 206 (353)
.+..+++.+.+. |+ +.+..|+..|+.++..++.||..+.+.|+||.|+.+|.+. +.++++.|..+|.
T Consensus 9 ~i~~lV~lL~s~----~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-------~~~vq~~Aa~aL~ 77 (233)
T 3tt9_A 9 TLERAVSMLEAD----HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-------NEDVQRAVCGALR 77 (233)
T ss_dssp CHHHHHHTCCSS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-------CHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCC----CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence 456677777553 44 5667899999999999999999999999999999999765 4679999999999
Q ss_pred hcCCCChhHHhhccCCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc---CC----
Q 018602 207 LLFPLAGEALTYLGSASSMHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK---EP---- 278 (353)
Q Consensus 207 ~L~~~~~e~k~~l~~~~~l~~Lv~~L~-~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~---~~---- 278 (353)
+|+..+++||..|.+.|.|+.|+++|+ +++.+.|++|+.+|.+||.. +.+|..|++ ++++.|++++- .|
T Consensus 78 nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~ 154 (233)
T 3tt9_A 78 NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT--EALLTLTENIIIPFSGWPEG 154 (233)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH--HHHHHHCCCCCHHHHCCCGG
T ss_pred HHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh--ccHHHHHHHHhccccCCccc
Confidence 996656899999999999999999998 57999999999999999855 778888865 57999999763 11
Q ss_pred --------CChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc-CcHHHHHHHhhhc
Q 018602 279 --------ICPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLVDA 324 (353)
Q Consensus 279 --------~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea-GaV~~LlelL~~~ 324 (353)
.++.....|..+|.||+..+ +++|..+.+. |.|++|+.++..+
T Consensus 155 ~~~~~~~~~~~~v~~na~~~L~nLss~~---~~~R~~~r~~~Gli~~Lv~~l~~~ 206 (233)
T 3tt9_A 155 DYPKANGLLDFDIFYNVTGCLRNMSSAG---ADGRKAMRRCDGLIDSLVHYVRGT 206 (233)
T ss_dssp GCCCCCTTCCHHHHHHHHHHHHHHTTSC---HHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCCcHHHHHHHHHhh
Confidence 25688999999999998854 3799999986 7999999999753
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.75 E-value=6.2e-17 Score=143.32 Aligned_cols=178 Identities=15% Similarity=0.240 Sum_probs=156.4
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
.|+..+..|+..|..++..++.++..+.+.|++|.|+.+|.+. +.++++.|+.+|.+|+..+++++..+.+.|
T Consensus 24 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 96 (210)
T 4db6_A 24 PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIASGGNEQIQAVIDAG 96 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcCCcHHHHHHHHCC
Confidence 3667788899999999999999999999999999999999765 457899999999999656678888888999
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
.++.++.+|++++...|.+|+.+|.+|+...++.+..+... |+++.|+++++++ ++...+.|+.+|.|+|... ..
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~---~~ 171 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGG---NE 171 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSC---HH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC---cH
Confidence 99999999999999999999999999986656666666565 9999999999987 8899999999999999874 37
Q ss_pred hHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 304 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
++..+++.|+++.|++++.+.+..+.+.|+
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~ 201 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQ 201 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999999876666666665
No 3
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.73 E-value=3.1e-17 Score=160.47 Aligned_cols=197 Identities=15% Similarity=0.105 Sum_probs=159.1
Q ss_pred hhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhccc-----ccccchhHHHHHHHHHHHHhcCCCChhHHhhcc-
Q 018602 147 TGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFS-----KTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG- 220 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~-----~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~- 220 (353)
..+.+|+.-|..++.+ ++||..|.+.|+++.|+.+|.... ..+ ..+..++++|..+|.+|+..++++|..+.
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~-~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTND-HYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3345799999999987 689999999999999999996321 000 13567899999999999766677888875
Q ss_pred CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 018602 221 SASSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSAS 299 (353)
Q Consensus 221 ~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~-~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~ 299 (353)
..|+||.|+++|++++.+.|++|+.+|.+|+.. +++++..|.+. |+|+.||++|....++...+.|+.+|+||+...
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~-G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~- 202 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHC- 202 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-
Confidence 677899999999999999999999999999853 46788888776 999999998644337889999999999999832
Q ss_pred CCCchHHHHH-HcCcHHHHHHHhhhccc----cchhhhh-----cc----CCHHHHHHHhccCC
Q 018602 300 AADKPIQKFV-DMGLVSLLLETLVDAQR----SLCEKPW-----VF----STDFAAVITGEERP 349 (353)
Q Consensus 300 ~~~~Nr~~~V-eaGaV~~LlelL~~~~~----~~~E~aL-----L~----~~~eGR~ai~~~~~ 349 (353)
++|+..++ ..|+|++|+++|..... .+.+.+. |+ .++++|.++.++.+
T Consensus 203 --~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~ 264 (354)
T 3nmw_A 203 --TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 264 (354)
T ss_dssp --HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH
T ss_pred --hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCC
Confidence 27999998 78999999999975432 2556555 65 58999999887543
No 4
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.72 E-value=8.7e-17 Score=157.29 Aligned_cols=192 Identities=13% Similarity=0.033 Sum_probs=160.2
Q ss_pred hhhHHHHHHHHHHHHHhChhhhhHHHh-cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC-ChhHHhhccCCC
Q 018602 146 QTGGRDLVAKIKKWIKESERNKRCIVD-YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL-AGEALTYLGSAS 223 (353)
Q Consensus 146 ~~~~~~Al~~Lr~Lakes~~nR~~i~~-aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~-~~e~k~~l~~~~ 223 (353)
+..+..|+..|+.++..++.+|..+.. .|++|.|+.+|.+. +.++++.|..+|.+|+.. ++++|..+.+.|
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-------~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G 170 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-------SEDLQQVIASVLRNLSWRADVNSKKTLREVG 170 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS-------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC-------CHHHHHHHHHHHHHHhccCCHHHHHHHHHCC
Confidence 355778999999999999889998865 58899999999764 457899999999999653 467899999999
Q ss_pred cHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCCh---hHHHHHHHHHHHhhc---
Q 018602 224 SMHCMVWFL-KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICP---TATEASFVVVYHMIT--- 296 (353)
Q Consensus 224 ~l~~Lv~~L-~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~---~a~k~Al~aL~nLc~--- 296 (353)
.++.|+.+| ++++.+.+++|+.+|.+|+...++++..|+...|+++.||++|+.+.+. ...+.|..+|.||+.
T Consensus 171 ~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a 250 (354)
T 3nmw_A 171 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250 (354)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhcc
Confidence 999999975 6678999999999999999645778888874459999999999866322 478999999999986
Q ss_pred -CCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh-----cc-CCHHHHHHHhccC
Q 018602 297 -SASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VF-STDFAAVITGEER 348 (353)
Q Consensus 297 -~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~-~~~eGR~ai~~~~ 348 (353)
.+ .||..++++|++++|+++|.+++..+.+.|. |+ .+++.+.+|.+.+
T Consensus 251 ~~~----~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G 305 (354)
T 3nmw_A 251 TNE----DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305 (354)
T ss_dssp TCH----HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT
T ss_pred CCH----HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence 43 7999999999999999999876655666655 77 5789999987654
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.72 E-value=3.3e-16 Score=141.02 Aligned_cols=203 Identities=18% Similarity=0.249 Sum_probs=170.6
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
.+..+++-+.+ .++..+..|+..|+.++..++.++..+.+.|+++.|+.+|.+. +.++++.|+.+|.+|
T Consensus 3 ~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~v~~~a~~~L~~l 71 (252)
T 4hxt_A 3 DVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-------DSEVQKEAARALANI 71 (252)
T ss_dssp HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-------CHHHHHHHHHHHHHH
Confidence 35566666654 3567788899999999999999999999999999999999765 357899999999999
Q ss_pred CCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHH
Q 018602 209 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 288 (353)
Q Consensus 209 ~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al 288 (353)
+..+++++..+.+.+.++.++.+|++++.+.|.+|+.+|.+|+...++++..+... |+++.|+++++++ ++...+.|+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~~-~~~~~~~a~ 149 (252)
T 4hxt_A 72 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTST-DSEVQKEAA 149 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCC-CHHHHHHHH
Confidence 66558888888899999999999999999999999999999986667778778675 9999999999977 789999999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh-----ccC-CHHHHHHHhcc
Q 018602 289 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFS-TDFAAVITGEE 347 (353)
Q Consensus 289 ~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~~-~~eGR~ai~~~ 347 (353)
.+|.|++... +.++..+++.|+++.|+++|.+.+..+.+.++ +|. .++.+..+.+.
T Consensus 150 ~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 211 (252)
T 4hxt_A 150 RALANIASGP---DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDA 211 (252)
T ss_dssp HHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHT
T ss_pred HHHHHHHcCC---HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 9999999864 35778999999999999999876656666666 665 55666666543
No 6
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.72 E-value=3.9e-16 Score=141.74 Aligned_cols=203 Identities=15% Similarity=0.276 Sum_probs=168.2
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
....+++.+.+. |+..+..|+..|+.+...++.++..+.+.|++|.|+.+|.+. +.++++.|+.+|.++
T Consensus 13 ~~~~~~~~L~s~----~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 13 ELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNI 81 (252)
T ss_dssp SHHHHHHHHHSS----CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 355667777653 557788999999877776888999999999999999999765 357899999999999
Q ss_pred CCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHH
Q 018602 209 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 288 (353)
Q Consensus 209 ~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al 288 (353)
...+++++..+.+.|.++.++.+|++++.+.|.+|+.+|.+|+...+.....+... |+++.|+++++++ ++...+.|+
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~-~~~v~~~a~ 159 (252)
T 4db8_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEAL 159 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHGGGCS-CHHHHHHHH
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC-CCHHHHHHHHhCC-CHHHHHHHH
Confidence 76568888888889999999999999999999999999999985544432566565 9999999999887 889999999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh-----cc-CCHHHHHHHhcc
Q 018602 289 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VF-STDFAAVITGEE 347 (353)
Q Consensus 289 ~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~-~~~eGR~ai~~~ 347 (353)
.+|.||+... +.++..+++.|+++.|+++|.+.+..+.+.++ || ..++.+..+.+.
T Consensus 160 ~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 221 (252)
T 4db8_A 160 WALSNIASGG---NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 221 (252)
T ss_dssp HHHHHHTTSC---HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHcCC---hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 9999999854 36888889999999999999876666666666 55 466777776654
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.71 E-value=2.1e-16 Score=158.58 Aligned_cols=186 Identities=12% Similarity=0.096 Sum_probs=156.4
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 018602 130 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 209 (353)
Q Consensus 130 v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~ 209 (353)
+..+++-+.+. ++..+..|+..|+.++..++.+|..+.++|++|.|+.+|.+. +.++++.|..+|.+|+
T Consensus 4 l~~lv~~L~s~----~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-------~~~~~~~A~~aL~nLa 72 (457)
T 1xm9_A 4 IPKAVQYLSSQ----DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-------NQNVQQAAAGALRNLV 72 (457)
T ss_dssp HHHHHHHHHSS----CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 45677777653 567788999999999998888899999999999999999864 4678999999999996
Q ss_pred CCChhHHhhccCCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc--------CC--
Q 018602 210 PLAGEALTYLGSASSMHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK--------EP-- 278 (353)
Q Consensus 210 ~~~~e~k~~l~~~~~l~~Lv~~L~-~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~--------~~-- 278 (353)
..++++|..+.+.|.++.++.+|+ +++.+.+++|+.+|.+|+.. ++++..|.+ |+++.|+++|. ++
T Consensus 73 ~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~ 149 (457)
T 1xm9_A 73 FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA--DALPVLADRVIIPFSGWCDGNSN 149 (457)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH--HHHHHHHHHTTHHHHTCC-----
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh--ccHHHHHHHHhccccccccCccc
Confidence 655899999999999999999999 89999999999999999966 778887855 99999999993 22
Q ss_pred -----CChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc-CcHHHHHHHhhhc------cccchhhhh
Q 018602 279 -----ICPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLVDA------QRSLCEKPW 333 (353)
Q Consensus 279 -----~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea-GaV~~LlelL~~~------~~~~~E~aL 333 (353)
.++...+.|..+|+|||..+ +||..+++. |++++|+.+|..+ +..+.|.++
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~~----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~ 212 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSAD----AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTSH----HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHccCH----HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHH
Confidence 13455569999999999875 899999998 9999999999752 344666665
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=157.28 Aligned_cols=194 Identities=15% Similarity=0.109 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccc-----cccchhHHHHHHHHHHHHhcCCCChhHHhhcc-CC
Q 018602 149 GRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSK-----TCLDEHVSVLEEILSTLTLLFPLAGEALTYLG-SA 222 (353)
Q Consensus 149 ~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~-----~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~-~~ 222 (353)
+.+|+.-|..++. +++||.+|.+.|+++.|+.+|..... .+ ..+..++++|..+|.+|+..++++|..+. ..
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~-~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTND-HYSITLRRYAGMALTNLTFGDVANKATLCSMK 242 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccC-CCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC
Confidence 3478999999965 48899999999999999999953200 00 12467899999999999766677888775 57
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc-CCCC
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT-SASA 300 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~-~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~-~~~~ 300 (353)
|+|+.|+++|++++.+.+++|+.+|.+|+.. ++.++..|.+. |+|+.||++|....++...+.|+.+|+||+. ..
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~-- 319 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCT-- 319 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH--
Confidence 7899999999999999999999999999853 46788899776 9999999986544478899999999999998 54
Q ss_pred CCchHHHHH-HcCcHHHHHHHhhhcccc----chhhhh-----cc----CCHHHHHHHhccCC
Q 018602 301 ADKPIQKFV-DMGLVSLLLETLVDAQRS----LCEKPW-----VF----STDFAAVITGEERP 349 (353)
Q Consensus 301 ~~~Nr~~~V-eaGaV~~LlelL~~~~~~----~~E~aL-----L~----~~~eGR~ai~~~~~ 349 (353)
+|+..++ ..|++++|+++|...... +.+.+. |+ .+++.|.+|.++++
T Consensus 320 --~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~ 380 (458)
T 3nmz_A 320 --ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380 (458)
T ss_dssp --HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred --HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence 7999998 789999999999754332 556555 55 58999999887543
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.66 E-value=2.3e-15 Score=156.05 Aligned_cols=191 Identities=12% Similarity=0.080 Sum_probs=158.2
Q ss_pred ChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 018602 126 SSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 205 (353)
Q Consensus 126 ~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L 205 (353)
....+..+|+.|.+ +++..+.+|+..|+.++..++.||..++++|+||.|+.+|.+. +.++++.|+.+|
T Consensus 46 ~~~~i~~LV~~L~s----~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-------~~~vq~~Aa~AL 114 (584)
T 3l6x_A 46 RQPELPEVIAMLGF----RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-------KKEVHLGACGAL 114 (584)
T ss_dssp CCCCHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-------SHHHHHHHHHHH
T ss_pred ccccHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-------CHHHHHHHHHHH
Confidence 34467788888864 3667788899999999999999999999999999999999865 467999999999
Q ss_pred HhcCCC-ChhHHhhccCCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc-------
Q 018602 206 TLLFPL-AGEALTYLGSASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK------- 276 (353)
Q Consensus 206 ~~L~~~-~~e~k~~l~~~~~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~------- 276 (353)
.+|+.. +++||..|.+.|.|+.|+.+|+++ +.+.+++|+.+|.+||. .++++..|.. |+++.||+++.
T Consensus 115 ~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~--~alp~Lv~LL~~p~sg~~ 191 (584)
T 3l6x_A 115 KNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD--HALHALTDEVIIPHSGWE 191 (584)
T ss_dssp HHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH--HTHHHHHHHTHHHHHCCC
T ss_pred HHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh--ccHHHHHHHHhccccccc
Confidence 999754 488999999999999999999985 78889999999999986 4788888863 67999999872
Q ss_pred ----------CCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc-CcHHHHHHHhhhc------cccchhhhh
Q 018602 277 ----------EPICPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLVDA------QRSLCEKPW 333 (353)
Q Consensus 277 ----------~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea-GaV~~LlelL~~~------~~~~~E~aL 333 (353)
+..++...+.|..+|.||+... +.+|..+++. |+|++|+.+|... +....|.++
T Consensus 192 ~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~---~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav 262 (584)
T 3l6x_A 192 REPNEDCKPRHIEWESVLTNTAGCLRNVSSER---SEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV 262 (584)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTSSC---HHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHH
Confidence 1224688899999999999875 2469999985 7889999999642 334556555
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=153.95 Aligned_cols=192 Identities=13% Similarity=0.041 Sum_probs=158.9
Q ss_pred hhHHHHHHHHHHHHHhChhhhhHHHh-cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC-ChhHHhhccCCCc
Q 018602 147 TGGRDLVAKIKKWIKESERNKRCIVD-YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL-AGEALTYLGSASS 224 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~~nR~~i~~-aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~-~~e~k~~l~~~~~ 224 (353)
..+..|+.-|+.++..++.+|..+.. .|++|.|+.+|.+. +.++++.|..+|.+|+.. ++++|..+.+.|.
T Consensus 215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-------~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga 287 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-------SEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS-------CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC-------CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 45678999999999999889988865 58899999999754 467899999999999653 4679999999999
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCCh---hHHHHHHHHHHHhhc---C
Q 018602 225 MHCMVWFL-KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICP---TATEASFVVVYHMIT---S 297 (353)
Q Consensus 225 l~~Lv~~L-~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~---~a~k~Al~aL~nLc~---~ 297 (353)
++.|+.+| ++++...+.+|+.+|.+|+...++++..|+...|+++.|+++|+.+.+. ...+.|..+|.||+. .
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 99999975 5678999999999999999645778888874459999999999876332 478999999999985 2
Q ss_pred CCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh-----cc-CCHHHHHHHhccC
Q 018602 298 ASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VF-STDFAAVITGEER 348 (353)
Q Consensus 298 ~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~-~~~eGR~ai~~~~ 348 (353)
. +.|+..++++|+|++|+++|..++..+.+.|. |+ ..++.+.+|.+.+
T Consensus 368 ~---~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G 421 (458)
T 3nmz_A 368 N---EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 421 (458)
T ss_dssp C---HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT
T ss_pred C---HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 2 37999999999999999999876555556655 66 5789999988764
No 11
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.64 E-value=5.6e-15 Score=134.07 Aligned_cols=186 Identities=13% Similarity=0.217 Sum_probs=156.6
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC
Q 018602 131 LEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP 210 (353)
Q Consensus 131 ~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~ 210 (353)
..+++-+.+ .++..+..|+.-|..++..++.+|..+.+.|++|.|+.+|.+. +.++++.|+.+|.+|+.
T Consensus 57 ~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 57 PALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIAS 125 (252)
T ss_dssp HHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-------CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHhhc
Confidence 344444433 3466778899999999999999999999999999999999764 46789999999999954
Q ss_pred CChhHH-hhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHH
Q 018602 211 LAGEAL-TYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFV 289 (353)
Q Consensus 211 ~~~e~k-~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~ 289 (353)
+.+++ ..+...|.++.++.+|++++...|.+|+.+|.+|+...++.+..+... |+++.|+++++++ ++...+.|+.
T Consensus 126 -~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~-~~~v~~~a~~ 202 (252)
T 4db8_A 126 -GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALW 202 (252)
T ss_dssp -SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHGGGCS-SHHHHHHHHH
T ss_pred -CCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHCCC-CHHHHHHHHH
Confidence 44555 677789999999999999999999999999999996666777777565 9999999999987 8899999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 290 VVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 290 aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
+|.|++... +.++..+++.|+++.|++++.+.+..+.+.|.
T Consensus 203 ~L~~l~~~~---~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 203 ALSNIASGG---NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HHHHHTTSC---HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHHHHhcCC---HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 999999654 36888999999999999999876666666665
No 12
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.63 E-value=1.4e-14 Score=130.36 Aligned_cols=188 Identities=18% Similarity=0.247 Sum_probs=159.8
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 018602 130 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 209 (353)
Q Consensus 130 v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~ 209 (353)
+..+++-+.+ .+...+..++.-|..++..++.+|..+.+.|+++.|+.+|.+. +.++++.|+.+|.+|+
T Consensus 46 i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-------~~~v~~~a~~~L~~l~ 114 (252)
T 4hxt_A 46 VEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-------DSEVQKEAARALANIA 114 (252)
T ss_dssp HHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-------SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHH
Confidence 3444555543 3566778899999999999899999999999999999999754 4678999999999997
Q ss_pred CCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHH
Q 018602 210 PLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFV 289 (353)
Q Consensus 210 ~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~ 289 (353)
..+++++..+.+.+.++.++.+|++++.+.|..|+.+|.+|+...+..+..+... |+++.|+++++++ ++.....|+.
T Consensus 115 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~-~~~v~~~a~~ 192 (252)
T 4hxt_A 115 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTST-DSEVQKEAAR 192 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-cCHHHHHHHHCCC-CHHHHHHHHH
Confidence 5667888888889999999999999999999999999999986666666667565 9999999999876 8899999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 290 VVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 290 aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
+|.++|... ..++..+++.|+++.|++++.+.+..+.+.|+
T Consensus 193 ~L~~l~~~~---~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 233 (252)
T 4hxt_A 193 ALANIASGP---TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233 (252)
T ss_dssp HHHHHTTSB---HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHH
Confidence 999999754 36888999999999999999876666666666
No 13
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=140.33 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=134.9
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 018602 175 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 254 (353)
Q Consensus 175 ~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~ 254 (353)
.+|.|+.+|.+... ..+++..|...|.+|+..++++|..+.+.|.||.|+.+|++++.+.|.+|+.+|.+|+..+
T Consensus 9 ~i~~lV~lL~s~~~-----~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 9 TLERAVSMLEADHM-----LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CHHHHHHTCCSSCC-----CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCCc-----hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 57999999976621 2367888888898886556788999888999999999999999999999999999998656
Q ss_pred hHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhcc---------
Q 018602 255 HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQ--------- 325 (353)
Q Consensus 255 ~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~--------- 325 (353)
++++..|.+. |+|+.||++|+...++...+.|..+|+||+..+ +||..+++. ++++|++++....
T Consensus 84 ~~nk~~I~~~-GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~----~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~ 157 (233)
T 3tt9_A 84 NDNKLEVAEL-NGVPRLLQVLKQTRDLETKKQITGLLWNLSSND----KLKNLMITE-ALLTLTENIIIPFSGWPEGDYP 157 (233)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG----GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCC
T ss_pred HHHHHHHHHc-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh----hhHHHHHhc-cHHHHHHHHhccccCCcccccc
Confidence 8899999887 999999999985337889999999999999886 899999985 6999999874210
Q ss_pred c-------cchhhhh-----ccC-CHHHHHHHhccCCcc
Q 018602 326 R-------SLCEKPW-----VFS-TDFAAVITGEERPTI 351 (353)
Q Consensus 326 ~-------~~~E~aL-----L~~-~~eGR~ai~~~~~~i 351 (353)
+ .+-+.+. |++ .+++|.+|.+++|.|
T Consensus 158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli 196 (233)
T 3tt9_A 158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLI 196 (233)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHH
T ss_pred cccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcH
Confidence 0 1222222 765 679999999987754
No 14
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.56 E-value=1.1e-13 Score=132.11 Aligned_cols=176 Identities=9% Similarity=0.118 Sum_probs=150.0
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHH-HhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAA-AFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~-~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
+.+.+..|+..|..++...+ |...+.+.|++|.|+. +|.+. +..+++.|+.+|.+++..+++++..+.+.|
T Consensus 53 ~~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~-------~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g 124 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAG-------AAGLRWRAAQLIGTCSQNVAAIQEQVLGLG 124 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCS-------SHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 33567789999999998654 8888899999999999 99764 467999999999998766677888888889
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCC
Q 018602 224 SMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 302 (353)
Q Consensus 224 ~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~ 302 (353)
.++.|+.+|+++ +...|.+|+-+|-+|+.-.+.....+... |+++.|+.+|+++ ++...+.|..+|.+|+... .
T Consensus 125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~-ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~---~ 199 (296)
T 1xqr_A 125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRL-DGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGH---P 199 (296)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC---G
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCC---h
Confidence 999999999975 78999999999999985445555555465 8999999999987 8999999999999998753 3
Q ss_pred chHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 303 KPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 303 ~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
+++..+++.|+|++|+++|...+..+.|.++
T Consensus 200 ~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al 230 (296)
T 1xqr_A 200 EHKGTLCSMGMVQQLVALVRTEHSPFHEHVL 230 (296)
T ss_dssp GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChhHHHHHH
Confidence 7999999999999999999877777888888
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.56 E-value=4.7e-14 Score=143.11 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=159.8
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHh-ChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKE-SERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 207 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lake-s~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~ 207 (353)
.+.++|+.+.+ +|+..|.+|+..+|++... ...-...+.++|+||.|+.+|.... ++++|.+|..+|.+
T Consensus 58 ~i~~~v~~l~s----~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~------~~~lq~~Aa~aL~n 127 (510)
T 3ul1_B 58 SVEDIVKGINS----NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD------CSPIQFESAWALTN 127 (510)
T ss_dssp CHHHHHHHHTS----SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcC----CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC------CHHHHHHHHHHHHH
Confidence 36788888865 5788999999999987643 2223457889999999999997652 46789999999999
Q ss_pred cCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCC----ChhH
Q 018602 208 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPI----CPTA 283 (353)
Q Consensus 208 L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~----s~~a 283 (353)
|+..+.+++..+.+.|++|.|+.+|++++.+.|++|+.+|.+|+..++.++..+-.. |+++.|+.+++... ....
T Consensus 128 ias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~~~ 206 (510)
T 3ul1_B 128 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGY 206 (510)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHH
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHHHHhccchhhhHHH
Confidence 987778888889999999999999999999999999999999996667788888565 99999999998642 2345
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHH-HHcCcHHHHHHHhhhccccchhhhh-----ccCCHHHHHHHhccCC
Q 018602 284 TEASFVVVYHMITSASAADKPIQKF-VDMGLVSLLLETLVDAQRSLCEKPW-----VFSTDFAAVITGEERP 349 (353)
Q Consensus 284 ~k~Al~aL~nLc~~~~~~~~Nr~~~-VeaGaV~~LlelL~~~~~~~~E~aL-----L~~~~eGR~ai~~~~~ 349 (353)
.+.+..+|.|+|... .+...+ ...|+++.|+++|.+.+..+.+.+. |+...+.+..+....+
T Consensus 207 ~~~a~~~L~nl~~~~----~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g 274 (510)
T 3ul1_B 207 LRNLTWTLSNLCRNK----NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG 274 (510)
T ss_dssp HHHHHHHHHHHHCCC----SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhcc----cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcc
Confidence 778999999999865 333333 3368999999999766544444444 6665544444433333
No 16
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.52 E-value=3.9e-13 Score=143.81 Aligned_cols=191 Identities=12% Similarity=0.066 Sum_probs=154.3
Q ss_pred CChhhHHHHHHHHHHHHHhCh-----------------------------hhh---hHHHhcCCHHHHHHHhhccccccc
Q 018602 144 EDQTGGRDLVAKIKKWIKESE-----------------------------RNK---RCIVDYGAVSVLAAAFESFSKTCL 191 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~-----------------------------~nR---~~i~~aG~i~~Lv~~L~s~~~~~~ 191 (353)
++..-+..|+.-|..++...+ .++ +.+.++|++|.|+.+|.+.
T Consensus 433 ~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~----- 507 (810)
T 3now_A 433 GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE----- 507 (810)
T ss_dssp TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-----
T ss_pred CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-----
Confidence 466778889999999998553 233 5688999999999999875
Q ss_pred chhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhh--hhhchHH
Q 018602 192 DEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFL--EIEGAIE 269 (353)
Q Consensus 192 ~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG--~~~gai~ 269 (353)
++.++++|+.+|.+|+ .+.+++..+.+.|.++.|+.+|++|+...|.+|+.+|.+|+...+. ...++ ...|+++
T Consensus 508 --s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p-~~~~~~~~~~~aIp 583 (810)
T 3now_A 508 --SHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP-EVSFSGQRSLDVIR 583 (810)
T ss_dssp --CHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHTTTHHHHHTHH
T ss_pred --CHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh-hhhhcchhhhcHHH
Confidence 3578999999999995 5778999999999999999999999999999999999999743222 22222 1247999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh-----ccCCHHHHHHH
Q 018602 270 SLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFSTDFAAVIT 344 (353)
Q Consensus 270 ~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~~~~eGR~ai 344 (353)
.|+++|..+.+......|+.+|.||+..+ ++|+.+++++|+++.|+++|.+....+-+.|+ |+.+++.+..+
T Consensus 584 pLv~LL~~~~~~l~~~eAl~AL~NLa~~~---d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~ 660 (810)
T 3now_A 584 PLLNLLQQDCTALENFESLMALTNLASMN---ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMF 660 (810)
T ss_dssp HHHHTTSTTSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCC---HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999985535455678999999999875 37999999999999999999876555555555 88888998888
Q ss_pred hc
Q 018602 345 GE 346 (353)
Q Consensus 345 ~~ 346 (353)
..
T Consensus 661 v~ 662 (810)
T 3now_A 661 EG 662 (810)
T ss_dssp HS
T ss_pred Hh
Confidence 74
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.52 E-value=2.6e-13 Score=136.75 Aligned_cols=200 Identities=11% Similarity=0.054 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhCh-hhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 018602 128 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 206 (353)
Q Consensus 128 ~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~-~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~ 206 (353)
..+..+++.+.+ +++..+..|+..|+.++.... .++..+.+.|++|.|+.+|.+.. +..+++.|+.+|.
T Consensus 74 ~~l~~lv~~L~s----~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~------~~~v~~~A~~~L~ 143 (528)
T 4b8j_A 74 ESLPAMIGGVYS----DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED------FPQLQFEAAWALT 143 (528)
T ss_dssp -CHHHHHHHHTS----SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC------CHHHHHHHHHHHH
Confidence 446777888854 467788899999999977664 67888999999999999997652 3678999999999
Q ss_pred hcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHH
Q 018602 207 LLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEA 286 (353)
Q Consensus 207 ~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~ 286 (353)
+++..+.+++..+...|.++.++.+|++++...|.+|+.+|.+|+...+.++..+... |+++.|+.++++..++...+.
T Consensus 144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~ 222 (528)
T 4b8j_A 144 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLAN-GALLPLLAQLNEHTKLSMLRN 222 (528)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT-TCHHHHHHTCCTTCCHHHHHH
T ss_pred HHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHC-CcHHHHHHHHhcCCCHHHHHH
Confidence 9976557888888888999999999999999999999999999986666777777565 999999999965558899999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh-----ccCCHHHHH
Q 018602 287 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFSTDFAAV 342 (353)
Q Consensus 287 Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~~~~eGR~ 342 (353)
|..+|.+||... .+....+..|+++.|+++|.+.+..+.+.++ |+...+.+.
T Consensus 223 a~~~L~~L~~~~----~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 279 (528)
T 4b8j_A 223 ATWTLSNFCRGK----PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKI 279 (528)
T ss_dssp HHHHHHHHHCSS----SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHHcCC----CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999874 4555566799999999999876666666655 666555553
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.51 E-value=1.5e-13 Score=137.70 Aligned_cols=163 Identities=7% Similarity=-0.010 Sum_probs=135.7
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 018602 175 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 254 (353)
Q Consensus 175 ~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~ 254 (353)
.+|.|+.+|.+. +.++++.|+.+|.+|+..++.+|..+.+.|.++.|+.+|++++.+.+..|+.+|.+|+...
T Consensus 3 ~l~~lv~~L~s~-------~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQ-------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHSS-------CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 479999999876 3568999999999986545667877888999999999999999999999999999999655
Q ss_pred hHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhh--------ccc
Q 018602 255 HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD--------AQR 326 (353)
Q Consensus 255 ~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~--------~~~ 326 (353)
++++..|.+. |+++.||++|+...++...+.|..+|+||+..+ .||..+++ |++++|+++|.. ...
T Consensus 76 ~~~k~~i~~~-G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~----~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~ 149 (457)
T 1xm9_A 76 TTNKLETRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD----ELKEELIA-DALPVLADRVIIPFSGWCDGNSN 149 (457)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS----STHHHHHH-HHHHHHHHHTTHHHHTCC-----
T ss_pred HHHHHHHHHc-CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH----HhHHHHHh-ccHHHHHHHHhccccccccCccc
Confidence 8899999776 999999999983338899999999999999876 79999999 999999999932 111
Q ss_pred c-----------chhhhh--ccCCHHHHHHHhccCCc
Q 018602 327 S-----------LCEKPW--VFSTDFAAVITGEERPT 350 (353)
Q Consensus 327 ~-----------~~E~aL--L~~~~eGR~ai~~~~~~ 350 (353)
. .+-.+| ||..++.|..|.+.+|+
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~ 186 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTH
T ss_pred hhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCC
Confidence 1 333444 99889999999876443
No 19
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.49 E-value=2.7e-13 Score=135.23 Aligned_cols=189 Identities=17% Similarity=0.119 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
.+..+++.+.+. .++..+..++..|+.+++..+ +|..+.+.|++|.|+.+|.+. +..+++.|+.+|.+|
T Consensus 60 ~i~~Lv~~L~~~---~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l 128 (529)
T 1jdh_A 60 MVSAIVRTMQNT---NDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSP-------VDSVLFYAITTLHNL 128 (529)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcCch-hHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 455666666542 256677889999999998754 999999999999999999765 357899999999998
Q ss_pred CCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHH
Q 018602 209 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 288 (353)
Q Consensus 209 ~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al 288 (353)
+..+++++..+.+.|.++.++.+|++++.+.+..++..|.+++...++++..+... |+++.|+++++++.+......+.
T Consensus 129 ~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~-~~i~~L~~ll~~~~~~~~~~~a~ 207 (529)
T 1jdh_A 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTS 207 (529)
T ss_dssp HHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHH
T ss_pred hcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHHhCChHHHHHHHH
Confidence 65445677778888999999999999999999999999999986557888888776 99999999999876667778899
Q ss_pred HHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 289 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 289 ~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
.+|.+|+..+ .|+..+++.|++++|++++.+.+..+.+.++
T Consensus 208 ~~L~~l~~~~----~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 208 RVLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp HHHHHHTTST----THHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred HHHHHHhcCc----ccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 9999999876 8999999999999999999765444444443
No 20
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.49 E-value=4.5e-13 Score=118.34 Aligned_cols=163 Identities=15% Similarity=0.242 Sum_probs=136.6
Q ss_pred cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 018602 173 YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVIS 252 (353)
Q Consensus 173 aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss 252 (353)
.|..+.|+.+|.+. +.++++.|+.+|.+|+..+++++..+.+.|.++.++.+|++++.+.|..|+.+|.+|+.
T Consensus 11 ~~~~~~l~~LL~s~-------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 11 GSELPQMVQQLNSP-------DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp --CHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHhcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 47899999999765 46789999999999965667888888888999999999999999999999999999986
Q ss_pred cchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhh
Q 018602 253 SDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKP 332 (353)
Q Consensus 253 ~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~a 332 (353)
..++++..+.+. |+++.|+++|+++ ++...+.|..+|.|++... ..++..+++.|+++.|+++|.+.+..+.+.+
T Consensus 84 ~~~~~~~~i~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 158 (210)
T 4db6_A 84 GGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGG---NEQIQAVIDAGALPALVQLLSSPNEQILQEA 158 (210)
T ss_dssp SCHHHHHHHHHT-TCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred CCcHHHHHHHHC-CCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCC---HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHH
Confidence 567777777675 9999999999887 8899999999999999754 3577889999999999999987666666666
Q ss_pred h-----ccCC-HHHHHHHhcc
Q 018602 333 W-----VFST-DFAAVITGEE 347 (353)
Q Consensus 333 L-----L~~~-~eGR~ai~~~ 347 (353)
+ +|.. ++.+..+...
T Consensus 159 ~~aL~~l~~~~~~~~~~~~~~ 179 (210)
T 4db6_A 159 LWALSNIASGGNEQKQAVKEA 179 (210)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHC
Confidence 6 6655 7777766654
No 21
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.49 E-value=1.5e-12 Score=132.36 Aligned_cols=179 Identities=11% Similarity=0.141 Sum_probs=152.8
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
+++..+..|+.-|..++..++.++..+..+|++|.|+.+|.+. +..+++.|+.+|.+++..+++++..+.+.|
T Consensus 263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g 335 (529)
T 3tpo_A 263 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335 (529)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-------ChhHHHHHHHHHHHHHccchHHHHHHhhcc
Confidence 4666777899999999998888888889999999999999765 357899999999999766778888888899
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
+++.++.+|++++...|..|+.+|.+|+...+.....+... |+++.|+.+++++ ++...+.|..+|.|++... ..+
T Consensus 336 ~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~-g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~--~~~ 411 (529)
T 3tpo_A 336 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH-GLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGG--TVE 411 (529)
T ss_dssp GGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHS--CHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhc-CcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCC--CHH
Confidence 99999999999999999999999999986666777767565 9999999999988 8899999999999998632 025
Q ss_pred hHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 304 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
++..+++.|+|++|+++|...+..+...+|
T Consensus 412 ~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L 441 (529)
T 3tpo_A 412 QIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 441 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHhcCCCHHHHHHHH
Confidence 788999999999999999866655555555
No 22
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.47 E-value=7.1e-13 Score=137.64 Aligned_cols=189 Identities=17% Similarity=0.119 Sum_probs=157.2
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
-+..+++.+.+. .++..+..|+..|+.+++..+ +|..+.+.|++|.|+.+|.+. +..+++.|+.+|.+|
T Consensus 57 ~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~A~~aL~nL 125 (644)
T 2z6h_A 57 MVSAIVRTMQNT---NDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSP-------VDSVLFYAITTLHNL 125 (644)
T ss_dssp HHHHHHHHHHSC---CCHHHHHHHHHHHHHHTTSHH-HHHHHHTTTHHHHHHHHTTCS-------SHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcChh-hHHHHHHcCCHHHHHHHHhCC-------CHHHHHHHHHHHHHH
Confidence 456667777542 356777889999999998755 999999999999999999765 357899999999998
Q ss_pred CCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHH
Q 018602 209 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 288 (353)
Q Consensus 209 ~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al 288 (353)
+..+++.+..+.+.|.++.++.+|++++.+.+..|+.+|.+|+...++++..+... |+++.|+++++++........++
T Consensus 126 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~~a~ 204 (644)
T 2z6h_A 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTS 204 (644)
T ss_dssp HHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc-CChHHHHHHHHcCChHHHHHHHH
Confidence 65445677777788999999999999998888888889999986557888888776 99999999999876667888999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 289 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 289 ~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
.+|.|||..+ .||..+++.|+++.|++++.+.+..+.+.++
T Consensus 205 ~~L~nLs~~~----~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~ 245 (644)
T 2z6h_A 205 RVLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245 (644)
T ss_dssp HHHHHHTTCT----THHHHHHHTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred HHHHHHhcCc----ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9999999876 8999999999999999999765444444444
No 23
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.46 E-value=4.7e-13 Score=138.67 Aligned_cols=167 Identities=13% Similarity=0.030 Sum_probs=138.0
Q ss_pred hcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 018602 172 DYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 251 (353)
Q Consensus 172 ~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Ls 251 (353)
..+.+|.|+.+|.+. +.+++++|..+|.+|+..++++|..+.+.|.|+.||.+|++++.+.+++|+.+|.+|+
T Consensus 46 ~~~~i~~LV~~L~s~-------~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 46 RQPELPEVIAMLGFR-------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS 118 (584)
T ss_dssp CCCCHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 347899999999765 3578999999999987667889999999999999999999999999999999999998
Q ss_pred cc-chHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhc------
Q 018602 252 SS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA------ 324 (353)
Q Consensus 252 s~-~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~------ 324 (353)
.. +++++..|.+. |+|+.||++|+.+.++...+.|..+|+||+..+ .|+..+++ |+|++|+++|...
T Consensus 119 ~~~~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~----~~k~~I~~-~alp~Lv~LL~~p~sg~~~ 192 (584)
T 3l6x_A 119 FGRDQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLSSHD----SIKMEIVD-HALHALTDEVIIPHSGWER 192 (584)
T ss_dssp SSSCHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG----GGHHHHHH-HTHHHHHHHTHHHHHCCC-
T ss_pred ccCCHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc----hhhHHHHh-ccHHHHHHHHhcccccccc
Confidence 53 47899999786 999999999997557788899999999999876 89999996 5699999998311
Q ss_pred ------------cccchhh---hh--ccCC-HHHHHHHhccCCcc
Q 018602 325 ------------QRSLCEK---PW--VFST-DFAAVITGEERPTI 351 (353)
Q Consensus 325 ------------~~~~~E~---aL--L~~~-~eGR~ai~~~~~~i 351 (353)
+..+.+. +| |+.+ +++|.+|.++.+.|
T Consensus 193 ~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli 237 (584)
T 3l6x_A 193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV 237 (584)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence 0122232 33 7765 57899999887754
No 24
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.44 E-value=1.9e-12 Score=131.18 Aligned_cols=179 Identities=10% Similarity=0.137 Sum_probs=152.2
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
.+...+..|+.-|..++..++.++..+.+.|++|.|+.+|.+. +..+++.++.+|.+++..+++++..+.+.|
T Consensus 244 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~al~aL~nl~~~~~~~~~~i~~~g 316 (510)
T 3ul1_B 244 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAG 316 (510)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-------ChhhhhHHHHHHHHhhcCCHHHHHHHhhcc
Confidence 4666677899999999998887777888999999999999765 357899999999999776778888888899
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
+++.++.+|++++.+.|..|+.+|.+|+....+....+.+. |+++.|+.+++++ ++..++.|..+|.|++... ..+
T Consensus 317 ~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~-g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~--~~~ 392 (510)
T 3ul1_B 317 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH-GLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGG--TVE 392 (510)
T ss_dssp GGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC--CHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccC--CHH
Confidence 99999999999999999999999999986666777777565 9999999999988 8899999999999997632 125
Q ss_pred hHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 304 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
++..+++.|++++|+++|...+..+...+|
T Consensus 393 ~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L 422 (510)
T 3ul1_B 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 422 (510)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence 888999999999999999876666666665
No 25
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.42 E-value=2.7e-12 Score=130.45 Aligned_cols=204 Identities=13% Similarity=0.133 Sum_probs=158.8
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 018602 130 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 209 (353)
Q Consensus 130 v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~ 209 (353)
+..|++-+... .++..+.+|+.-|..++..++.++..++++|++|.|+.+|.+. +.++++.|+.+|.+|+
T Consensus 121 ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~-------~~~v~e~A~~aL~nLa 190 (529)
T 3tpo_A 121 IPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-------HAHISEQAVWALGNIA 190 (529)
T ss_dssp HHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 44556666432 3567788899999999999999999999999999999999765 4678999999999996
Q ss_pred CCChhHHhhccCCCcHHHHHHHHhcCC-----HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHH
Q 018602 210 PLAGEALTYLGSASSMHCMVWFLKSGD-----LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTAT 284 (353)
Q Consensus 210 ~~~~e~k~~l~~~~~l~~Lv~~L~~gs-----~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~ 284 (353)
..+++++..+.+.|.++.++.+|+..+ .....+|+..|.+++.......... ...|+++.|++++.++ ++...
T Consensus 191 ~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~~~~~lp~L~~LL~~~-~~~v~ 268 (529)
T 3tpo_A 191 GAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-AVEQILPTLVRLLHHN-DPEVL 268 (529)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH-HHHHHHHHHHHHTTSS-CHHHH
T ss_pred ccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH-HHhhHHHHHHHHhcCC-cHHHH
Confidence 656788999989999999999998764 3457788999999875433222233 3358999999999887 88999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh-----c-cCCHHHHHHHhccC
Q 018602 285 EASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----V-FSTDFAAVITGEER 348 (353)
Q Consensus 285 k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L-~~~~eGR~ai~~~~ 348 (353)
.+|..+|.+++... ..++..+++.|+++.|+++|...+..+.+.++ + +..++.+..+....
T Consensus 269 ~~a~~aL~~l~~~~---~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g 335 (529)
T 3tpo_A 269 ADSCWAISYLTDGP---NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335 (529)
T ss_dssp HHHHHHHHHHHSSC---HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhh---hhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcc
Confidence 99999999999875 23455567889999999999866555555555 4 44666777666543
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.42 E-value=4.4e-12 Score=126.50 Aligned_cols=203 Identities=12% Similarity=0.067 Sum_probs=162.5
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHh-cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVD-YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 207 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~-aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~ 207 (353)
.+..+++-+.+ +++..+..|+.-|..++..++ +|..+.. .|+++.|+..|.+.. +.++++.|+.+|.+
T Consensus 18 ~i~~Lv~lL~~----~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~------~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 18 AIPELTKLLND----EDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTN------DVETARCTAGTLHN 86 (529)
T ss_dssp HHHHHHHHHTC----SCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCC----CCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCC------CHHHHHHHHHHHHH
Confidence 45566665542 466778889999999998665 6666554 499999999997542 35789999999999
Q ss_pred cCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHH
Q 018602 208 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEAS 287 (353)
Q Consensus 208 L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~A 287 (353)
|+ .+++++..+.+.|.++.++.+|++++...|.+|+.+|.+|+...+..+..+.+. |+++.|+++++++ +++....+
T Consensus 87 ls-~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~~-~~~~~~~~ 163 (529)
T 1jdh_A 87 LS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAIT 163 (529)
T ss_dssp HT-TSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHH-THHHHHHHGGGCC-CHHHHHHH
T ss_pred HH-cCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHc-CCHHHHHHHHhcC-CHHHHHHH
Confidence 84 456788888888999999999999999999999999999986655667777565 9999999999986 78888889
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhcccc-c---hhhhh--ccCCHHHHHHHhccC
Q 018602 288 FVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRS-L---CEKPW--VFSTDFAAVITGEER 348 (353)
Q Consensus 288 l~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~-~---~E~aL--L~~~~eGR~ai~~~~ 348 (353)
..+|.+++... ++++..+++.|+++.|+++|.+.+.. . +-.+| |+.+++.|..+...+
T Consensus 164 ~~~L~~la~~~---~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g 227 (529)
T 1jdh_A 164 TDCLQILAYGN---QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227 (529)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTT
T ss_pred HHHHHHHHhCC---HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCC
Confidence 99999998753 37999999999999999999765322 2 22233 888888988887643
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.41 E-value=2.1e-12 Score=137.77 Aligned_cols=195 Identities=10% Similarity=0.073 Sum_probs=145.0
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
.+..+++.|.++ +...+..+++.++.. +|.++. .|++|.|+.+|.+. +..+++.|+.+|.+|
T Consensus 116 ~i~~lv~~L~~~----~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~-------d~~vr~~A~~~L~~L 177 (780)
T 2z6g_A 116 AHPTNVQRLAEP----SQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDE-------DQVVVNKAAVMVHQL 177 (780)
T ss_dssp ----------CC----SCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCS-------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCc----cHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCC-------CHHHHHHHHHHHHHH
Confidence 456778888654 334455566666643 455665 79999999999743 467899999999998
Q ss_pred CCCChhHHhhcc-CCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHH
Q 018602 209 FPLAGEALTYLG-SASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEA 286 (353)
Q Consensus 209 ~~~~~e~k~~l~-~~~~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~ 286 (353)
+. +++++..+. .+++++.|+++|+++ +.+.|.+|+..|.+|+.. ++++..|++. |+|+.|+++|+++ ++...+.
T Consensus 178 ~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~-g~I~~Lv~lL~~~-~~~v~~~ 253 (780)
T 2z6g_A 178 SK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKS-GGIPALVNMLGSP-VDSVLFH 253 (780)
T ss_dssp HT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHTTCS-CHHHHHH
T ss_pred hC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHc-CCHHHHHHHHcCC-CHHHHHH
Confidence 54 556666665 568999999999987 899999999999999854 6778888886 9999999999987 8899999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhh---hh--cc-CCHHHHHHHhccC
Q 018602 287 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEK---PW--VF-STDFAAVITGEER 348 (353)
Q Consensus 287 Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~---aL--L~-~~~eGR~ai~~~~ 348 (353)
|+.+|.|||... +.++..+++.|+|+.|+++|.+.+..+.+. +| |+ .++++|.++....
T Consensus 254 A~~aL~nLa~~~---~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~ 318 (780)
T 2z6g_A 254 AITTLHNLLLHQ---EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 318 (780)
T ss_dssp HHHHHHHHHHHS---TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHHHhCCC---hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Confidence 999999999864 256777778999999999998654333333 34 55 5789999887653
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.40 E-value=9.5e-12 Score=125.63 Aligned_cols=203 Identities=10% Similarity=0.099 Sum_probs=162.2
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHHHHh-ChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 130 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKE-SERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 130 v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lake-s~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
+..+++.+.+ +++..+..|+..|+.+... +..++..+.+.|++|.|+.+|.+.. +..+++.|+.+|.++
T Consensus 89 i~~lv~~L~s----~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~------~~~v~~~A~~~L~~l 158 (530)
T 1wa5_B 89 LPQMTQQLNS----DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ------PEMLQLEAAWALTNI 158 (530)
T ss_dssp HHHHHHHHSC----SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC------CHHHHHHHHHHHHHH
Confidence 5566777754 4667788999999998654 3456778889999999999997641 467899999999999
Q ss_pred CCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHH
Q 018602 209 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 288 (353)
Q Consensus 209 ~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al 288 (353)
+..+.+.+..+...+.++.++.+|++++.+.|.+|+.+|.+|+...+.++..+... |+++.|++++++. ++...+.|+
T Consensus 159 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~-~~~v~~~a~ 236 (530)
T 1wa5_B 159 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNSN-KPSLIRTAT 236 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHGGGSC-CHHHHHHHH
T ss_pred hCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHc-CcHHHHHHHhccC-CHHHHHHHH
Confidence 76556777778788999999999999999999999999999986656777777665 9999999999885 888999999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh-----ccC-CHHHHHHHhcc
Q 018602 289 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFS-TDFAAVITGEE 347 (353)
Q Consensus 289 ~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~~-~~eGR~ai~~~ 347 (353)
.+|.+||... +.+....+..|+++.|+++|.+.+..+...++ |+. ..+.+..+...
T Consensus 237 ~~L~~L~~~~---~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 298 (530)
T 1wa5_B 237 WTLSNLCRGK---KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV 298 (530)
T ss_dssp HHHHHHHCCS---SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHHhCCC---CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 9999999763 13555677789999999999876555555555 554 45666666543
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.39 E-value=7.4e-12 Score=129.93 Aligned_cols=203 Identities=12% Similarity=0.069 Sum_probs=163.6
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 207 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~a-G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~ 207 (353)
.+..|++-+.+ +++..+..|+.-|..++++.+ +|..+... |+++.|+..|.+.. +.+++..|+.+|.+
T Consensus 15 ~i~~Lv~lL~~----~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~------~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 15 AIPELTKLLND----EDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTN------DVETARCTAGTLHN 83 (644)
T ss_dssp THHHHHHHHTC----SCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCC------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC----CCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCC------CHHHHHHHHHHHHH
Confidence 45556665543 466778889999999998775 77777655 99999999997642 35789999999999
Q ss_pred cCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHH
Q 018602 208 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEAS 287 (353)
Q Consensus 208 L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~A 287 (353)
|+ .+++++..+.+.|.++.++.+|++++...|.+|+.+|.+|+...+..+..+... |+++.|+++|+++ +++....+
T Consensus 84 Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~-g~i~~Lv~lL~~~-~~~~~~~a 160 (644)
T 2z6h_A 84 LS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAIT 160 (644)
T ss_dssp HT-TSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHT-THHHHHHHGGGCC-CHHHHHHH
T ss_pred Hh-cChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHC-CChHHHHHHHCcC-CHHHHHHH
Confidence 84 456688888888999999999999999999999999999986655666667565 9999999999987 77888888
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccc-cc---hhhhh--ccCCHHHHHHHhccC
Q 018602 288 FVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQR-SL---CEKPW--VFSTDFAAVITGEER 348 (353)
Q Consensus 288 l~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~-~~---~E~aL--L~~~~eGR~ai~~~~ 348 (353)
+.+|.+|+... ++|+..+++.|+|+.|+++|.+.+. .. +-.+| |+.+++.|..+....
T Consensus 161 ~~~L~~La~~~---~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g 224 (644)
T 2z6h_A 161 TDCLQILAYGN---QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 224 (644)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCC
Confidence 89999999743 3799999999999999999976532 22 22333 889999999888753
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.37 E-value=1.2e-11 Score=124.55 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=158.9
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 018602 130 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 209 (353)
Q Consensus 130 v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~ 209 (353)
+..|++-+.+. .++..+..|+.-|..++..++.++..+.+.|++|.|+.+|.+. +..+++.|+.+|.+|+
T Consensus 119 v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 119 VPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-------SDDVREQAVWALGNVA 188 (528)
T ss_dssp HHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-------CHHHHHHHHHHHHHHh
Confidence 34455555432 2367778899999999999999999999999999999999764 4578999999999996
Q ss_pred CCChhHHhhccCCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHH
Q 018602 210 PLAGEALTYLGSASSMHCMVWFL-KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 288 (353)
Q Consensus 210 ~~~~e~k~~l~~~~~l~~Lv~~L-~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al 288 (353)
..+.+++..+...+.++.|+.+| .+.+...+.+|+.+|.+|+...+.....+ . .|+++.|++++.++ ++.....|+
T Consensus 189 ~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~-~~~l~~L~~lL~~~-~~~v~~~a~ 265 (528)
T 4b8j_A 189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ-T-RPALPALARLIHSN-DEEVLTDAC 265 (528)
T ss_dssp HTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH-H-TTHHHHHHHHTTCC-CHHHHHHHH
T ss_pred CCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH-H-HHHHHHHHHHHCCC-CHHHHHHHH
Confidence 55567788888889999999999 56689999999999999985532222222 2 49999999999877 889999999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh-----ccC-CHHHHHHHhc
Q 018602 289 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFS-TDFAAVITGE 346 (353)
Q Consensus 289 ~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~~-~~eGR~ai~~ 346 (353)
.+|.+|+... ......+++.|+++.|+++|.+.+..+.+.++ ++. ..+.+..+..
T Consensus 266 ~aL~~l~~~~---~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 326 (528)
T 4b8j_A 266 WALSYLSDGT---NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID 326 (528)
T ss_dssp HHHHHHTSSC---HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHcCC---HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999865 12345778899999999999876666666666 554 5666666664
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.36 E-value=1.2e-11 Score=131.92 Aligned_cols=189 Identities=16% Similarity=0.118 Sum_probs=154.7
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
-+..|++.+... .+...+..|+..|+.+++. +.||..+.+.|++|.|+.+|.+. +..+++.|+.+|.+|
T Consensus 193 ~i~~Lv~~L~~~---~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~-------~~~v~~~A~~aL~nL 261 (780)
T 2z6g_A 193 MVSAIVRTMQNT---NDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP-------VDSVLFHAITTLHNL 261 (780)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC---CCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 445556666432 3667778899999998886 46798999999999999999765 357899999999998
Q ss_pred CCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHH
Q 018602 209 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 288 (353)
Q Consensus 209 ~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al 288 (353)
+...++.+..+.+.+.++.++++|++++.+.+..|+.+|..|+...++.+..+... |.++.|+++++++........|.
T Consensus 262 a~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~~a~ 340 (780)
T 2z6g_A 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTS 340 (780)
T ss_dssp HHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHHTTCCCHHHHHHHH
T ss_pred hCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-CCHHHHHHHHhcCCHHHHHHHHH
Confidence 65445677777788999999999999999999999999999985557788888776 99999999999875555667889
Q ss_pred HHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 289 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 289 ~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
.+|.+||... .|+..+++.|+|+.|+++|.+.+..+.+.++
T Consensus 341 ~aL~~Ls~~~----~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~ 381 (780)
T 2z6g_A 341 RVLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 381 (780)
T ss_dssp HHHHHHHTST----THHHHHHHTTHHHHHGGGTTCSCHHHHHHHH
T ss_pred HHHHHhhcCh----HHHHHHHHhchHHHHHHHHcCCchHHHHHHH
Confidence 9999999876 8999999999999999999765444444444
No 32
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.34 E-value=1.1e-11 Score=132.55 Aligned_cols=192 Identities=10% Similarity=0.007 Sum_probs=151.8
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhcc---
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG--- 220 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~--- 220 (353)
+++..+.+|+.-|..++. ++.+|..+.++|++|.|+.+|.++ +...++.|..+|.+|....+. ...+.
T Consensus 507 ~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~-------~~~~k~~Aa~AL~nL~~~~~p-~~~~~~~~ 577 (810)
T 3now_A 507 ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEG-------TEKGKRHATQALARIGITINP-EVSFSGQR 577 (810)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSS-------CHHHHHHHHHHHHHHHHHSCH-HHHTTTHH
T ss_pred CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccC-------CHHHHHHHHHHHHHHhcCCCh-hhhhcchh
Confidence 567788899999999996 456999999999999999999765 246789999999988532221 22221
Q ss_pred CCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 018602 221 SASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSAS 299 (353)
Q Consensus 221 ~~~~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~ 299 (353)
..++++.|+.+|.++ +...+.+|+.+|.+|++.+++++..|.+. |+++.|+.++.++ ++...+.|+.+|.||+..+
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a-G~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~~- 654 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKE-QGVSKIEYYLMED-HLYLTRAAAQCLCNLVMSE- 654 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHHHSC-CTTHHHHHHHHHHHHTTSH-
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCh-
Confidence 135899999999877 55666789999999997767777777676 9999999999877 7889999999999999886
Q ss_pred CCCchHHHHHH-cCcHHHHHHHhhhccccchhhhh-----ccC-CHHHHHHHhccCCc
Q 018602 300 AADKPIQKFVD-MGLVSLLLETLVDAQRSLCEKPW-----VFS-TDFAAVITGEERPT 350 (353)
Q Consensus 300 ~~~~Nr~~~Ve-aGaV~~LlelL~~~~~~~~E~aL-----L~~-~~eGR~ai~~~~~~ 350 (353)
.++.++++ .|+++.|+.+|...+..+.+.|. |+. +++...++..++++
T Consensus 655 ---~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~ 709 (810)
T 3now_A 655 ---DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709 (810)
T ss_dssp ---HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH
T ss_pred ---HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 79999997 79999999999765544444444 655 67777888775444
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.33 E-value=3.9e-11 Score=116.91 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=151.3
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 018602 130 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 209 (353)
Q Consensus 130 v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~ 209 (353)
+..+++-+.+. .++..+..|+.-|..++..+++++..+.+.|++|.|+.+|.+. +.++++.|+.+|.++.
T Consensus 66 i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~vr~~a~~~L~~l~ 135 (450)
T 2jdq_A 66 VARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-------FEDVQEQAVWALGNIA 135 (450)
T ss_dssp HHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHc
Confidence 44555555432 2556778899999999998888888888999999999999764 4678999999999986
Q ss_pred CCChhHHhhccCCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCCChhHHHHH
Q 018602 210 PLAGEALTYLGSASSMHCMVWFLKS-GDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPICPTATEAS 287 (353)
Q Consensus 210 ~~~~e~k~~l~~~~~l~~Lv~~L~~-gs~~~R~~Aa~lL~~Lss~~-~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~A 287 (353)
..+.+++..+...+.++.++.+|++ .+...|.+|+.+|.+|+... +.....+ - .++++.|+++++++ ++.....|
T Consensus 136 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~-~~~l~~L~~~l~~~-~~~v~~~a 212 (450)
T 2jdq_A 136 GDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-V-SPCLNVLSWLLFVS-DTDVLADA 212 (450)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-T-GGGHHHHHHHTTCC-CHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-H-HHHHHHHHHHHccC-CHHHHHHH
Confidence 6556778888888999999999996 68999999999999998543 2222222 2 48999999999877 78899999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 288 FVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 288 l~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
..+|.+++... .+++..+++.|+++.|+++|.+.+..+.+.++
T Consensus 213 ~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 255 (450)
T 2jdq_A 213 CWALSYLSDGP---NDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255 (450)
T ss_dssp HHHHHHHTSSS---HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHCCC---cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHH
Confidence 99999999864 25788889999999999999866655666655
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.31 E-value=5.1e-11 Score=120.31 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=154.1
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCc
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 224 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~ 224 (353)
++..+..|+.-|..++..++.++..+.+.|++|.|+.+|.+. +.++++.|+.+|.+|+..+++++..+...+.
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 216 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-------SVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 216 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhCCCccchHHHHHcCc
Confidence 556778899999999999888999999999999999999764 4678999999999996655678888878899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCch
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKP 304 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~N 304 (353)
++.++.+|++++...|.+|+.+|.+|+..........-. .|+++.|++++.++ ++.....|+.+|.+|+... ..+
T Consensus 217 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~---~~~ 291 (530)
T 1wa5_B 217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSM-DTETLVDACWAISYLSDGP---QEA 291 (530)
T ss_dssp HHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSC---HHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCC---HHH
Confidence 999999999999999999999999998543122222213 48999999999877 7889999999999999764 257
Q ss_pred HHHHHHcCcHHHHHHHhhhccccchhhhh-----ccC-CHHHHHHHhc
Q 018602 305 IQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFS-TDFAAVITGE 346 (353)
Q Consensus 305 r~~~VeaGaV~~LlelL~~~~~~~~E~aL-----L~~-~~eGR~ai~~ 346 (353)
+..+++.|+++.|+++|.+.+..+.+.++ ++. ..+....+..
T Consensus 292 ~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 339 (530)
T 1wa5_B 292 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888999999999999876655666665 553 4555555443
No 35
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.29 E-value=1.4e-10 Score=112.91 Aligned_cols=190 Identities=9% Similarity=0.137 Sum_probs=152.7
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
-+..+++-+. .++...+..++.-|..++...+.++..+...|++|.|+.+|.+. +.++++.|+.+|.++
T Consensus 193 ~l~~L~~~l~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 193 CLNVLSWLLF----VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-------DYKVVSPALRAVGNI 261 (450)
T ss_dssp GHHHHHHHTT----CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-------chhHHHHHHHHHHHH
Confidence 3444555443 24566677889999999998888888889999999999999643 457899999999999
Q ss_pred CCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHH
Q 018602 209 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 288 (353)
Q Consensus 209 ~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al 288 (353)
...+++.+..+.+.+.++.++.+|++++...|..|+.+|-+++...+.....+.+. |+++.|+++++++ ++..++.|.
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~~l~~~-~~~v~~~a~ 339 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDA-NIFPALISILQTA-EFRTRKEAA 339 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHHHHS-CHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHhcC-CHHHHHHHH
Confidence 65555556666677999999999999999999999999999985445555555455 9999999999987 889999999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 289 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 289 ~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
.+|.|++... ..++...+++.|+++.|+++|.+.+..+.+.++
T Consensus 340 ~~L~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 382 (450)
T 2jdq_A 340 WAITNATSGG--SAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382 (450)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHcCC--CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence 9999998631 025788899999999999999876666666666
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.25 E-value=1.5e-10 Score=110.31 Aligned_cols=147 Identities=10% Similarity=0.107 Sum_probs=126.9
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
.++..+..|+.-|..++..++.+|..+.+.|++|.|+.+|.+.. +..++++|+.+|.+|......++..+...+
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~------~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g 167 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA------CDTVRVKALFAISCLVREQEAGLLQFLRLD 167 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC------CHHHHHHHHHHHHHHHcCCcHHHHHHHHCC
Confidence 35567778999999999999999999999999999999997531 357899999999998654556666666778
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
.++.|+.+|++++...|..|+.+|.+|+...++.+..+.+. |+++.|+.+|+.+ ++...+.|+.+|.|+....
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~-g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM-GMVQQLVALVRTE-HSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT-THHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc-CCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999986656777777676 9999999999887 8899999999999998763
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.2e-11 Score=131.11 Aligned_cols=172 Identities=12% Similarity=0.138 Sum_probs=129.0
Q ss_pred hhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHH---HHHH
Q 018602 166 NKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLS---RRRN 242 (353)
Q Consensus 166 nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~---~R~~ 242 (353)
||+.+.++|++|.|+.++.+. +..+++.|+.+|.+| ..+.++|..+...|.++.|+.+|.+|+.. .|.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~-------s~~~re~A~~aL~nL-S~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~ 520 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNL-------SPNCKQQVVRIIYNI-TRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRIL 520 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGS-------CHHHHHHHHHHHHHH-HTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCC-------CHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence 778899999999999999775 346899999999999 45788999999899999999999999654 7999
Q ss_pred HHHHHHHHhccchHHHHHhh--hhhchHHHHHHhhcCC-CCh------------hHHHHHHHHHHHhhcCCCCC-CchHH
Q 018602 243 TVLVLREVISSDHRRVNMFL--EIEGAIESLYTLIKEP-ICP------------TATEASFVVVYHMITSASAA-DKPIQ 306 (353)
Q Consensus 243 Aa~lL~~Lss~~~~~~~~IG--~~~gai~~LV~lL~~~-~s~------------~a~k~Al~aL~nLc~~~~~~-~~Nr~ 306 (353)
|+.+|.+|+.. .+....+| ...|+|++|+.+|..+ ... .....|+.||.||+..+++. ++.|.
T Consensus 521 AA~ALArLlis-~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~ 599 (778)
T 3opb_A 521 GCRALTRMLIF-TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCK 599 (778)
T ss_dssp HHHHHHHHHHT-SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHhc-CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHH
Confidence 99999999833 22233453 2249999999999831 111 23779999999999975100 02388
Q ss_pred HHHHc-CcHHHHHHHhhhccccchhhhh-----ccCCHHHH-HHHhc
Q 018602 307 KFVDM-GLVSLLLETLVDAQRSLCEKPW-----VFSTDFAA-VITGE 346 (353)
Q Consensus 307 ~~Vea-GaV~~LlelL~~~~~~~~E~aL-----L~~~~eGR-~ai~~ 346 (353)
++++. |+++.|.++|.+....+...|. |+.+++|+ +.+..
T Consensus 600 ~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~ 646 (778)
T 3opb_A 600 HIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFN 646 (778)
T ss_dssp HHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSC
T ss_pred HHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 99996 9999999999765333333333 88888887 35543
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.22 E-value=9.1e-13 Score=103.22 Aligned_cols=64 Identities=14% Similarity=-0.035 Sum_probs=55.6
Q ss_pred CCchhhhhhhhhhHHhhhccccc-hhHHHHHh-HHHHhhcCCccccccccccCCceecCchhh--hhhhhh
Q 018602 42 MPGKRHVRLINLAKWLVESAWVA-LRLFQERC-EEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 42 ~~~~~~~~~c~l~~~~m~d~~~~-~~~~~eR~-~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
+|.+|. |||+.++|+|||+. .|.+|+|. +..||.++.+||.|+++|....++||+.|+ |++|+.
T Consensus 11 ~p~~~~---CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~ 78 (85)
T 2kr4_A 11 APDEFR---DPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMR 78 (85)
T ss_dssp CCTTTB---CTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CchheE---CcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHH
Confidence 445554 99999999999974 58888887 555778899999999999999999999999 999997
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.20 E-value=1.9e-12 Score=104.54 Aligned_cols=64 Identities=14% Similarity=-0.007 Sum_probs=55.6
Q ss_pred CCchhhhhhhhhhHHhhhcccc-chhHHHHHh-HHHHhhcCCccccccccccCCceecCchhh--hhhhhh
Q 018602 42 MPGKRHVRLINLAKWLVESAWV-ALRLFQERC-EEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 42 ~~~~~~~~~c~l~~~~m~d~~~-~~~~~~eR~-~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
+|.+|. |||+.++|+|||+ +.|.+|+|. +..||.++.+||.|+++|...+++||+.|+ |++|+.
T Consensus 26 ~p~~~~---CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 93 (100)
T 2kre_A 26 APDEFR---DPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMR 93 (100)
T ss_dssp CSTTTB---CTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHH
T ss_pred CcHhhC---CcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHH
Confidence 455554 9999999999996 558888887 555778899999999999999999999999 999997
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.19 E-value=2.2e-12 Score=103.77 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=55.3
Q ss_pred CCchhhhhhhhhhHHhhhccccc-hh-HHHHHh-HHHHhhcCCccccccccccCCceecCchhh--hhhhhh
Q 018602 42 MPGKRHVRLINLAKWLVESAWVA-LR-LFQERC-EEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 42 ~~~~~~~~~c~l~~~~m~d~~~~-~~-~~~eR~-~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
+|++|. |||+.++|+|||+. .+ .+|+|. +..||..+.+||+|+++|...+|+||+.|+ |++|+.
T Consensus 19 ~p~~~~---CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 19 ACDEFL---DPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp CCTTTB---CTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred CcHhcC---CcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 455554 99999999999975 47 888887 555777899999999999999999999999 999997
No 41
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.09 E-value=1.1e-11 Score=133.00 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=58.5
Q ss_pred ccCCchhhhhhhhhhHHhhhcccc-chh-HHHHHhHHH-HhhcCCccccccccccCCceecCchhh--hhhhhh
Q 018602 40 LTMPGKRHVRLINLAKWLVESAWV-ALR-LFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 40 ~~~~~~~~~~~c~l~~~~m~d~~~-~~~-~~~eR~~~e-~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
.++|++|. |||+.++|+|||+ ++| +||||..|+ |+..++|||.|+|+|.+.+++||++|| |++||.
T Consensus 886 ~~iP~~F~---cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 886 GDVPDEFL---DPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp CCSCGGGB---CTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cCCcHHhC---CcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 66788887 9999999999997 455 699999555 667799999999999999999999999 999998
No 42
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.08 E-value=4.7e-12 Score=93.21 Aligned_cols=54 Identities=13% Similarity=0.021 Sum_probs=46.3
Q ss_pred hhhhhhhHHhhhccccc--hhHHHHHh-HHHHhhcCCccccccccccCCceecCchh
Q 018602 48 VRLINLAKWLVESAWVA--LRLFQERC-EEELLWAAEMIKIKAQDLKGKEVKVNTSL 101 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~--~~~~~eR~-~~e~~~g~~tcP~T~q~l~~~~l~pN~~L 101 (353)
+|+|||+.++|+|||++ +|.+|||. +++|+..+++||+|+++|..++|+||++-
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 46799999999999975 58888887 55577788999999999999999999863
No 43
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.03 E-value=4.1e-09 Score=109.49 Aligned_cols=197 Identities=14% Similarity=0.151 Sum_probs=149.8
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHH
Q 018602 120 KLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLE 199 (353)
Q Consensus 120 tp~~p~~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E 199 (353)
+|.++...+.+..|+.+++++. -.++++.|+..||.++|+. |.- +.+++.+.|+..|..... +.++..
T Consensus 13 ~~~~qs~~etI~~L~~Rl~~~t---l~eDRR~Av~~Lk~~sk~y---~~~-Vg~~~l~~li~~L~~d~~-----D~e~v~ 80 (651)
T 3grl_A 13 AGPQHTEAETIQKLCDRVASST---LLDDRRNAVRALKSLSKKY---RLE-VGIQAMEHLIHVLQTDRS-----DSEIIG 80 (651)
T ss_dssp -----CHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHTTTTT---TTH-HHHHTHHHHHHHHHSCTT-----CHHHHH
T ss_pred CCCCCChhhHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHh---HHH-hhhhhHHHHHHHHhcccc-----cHHHHH
Confidence 3334455678889999997754 4467889999999998864 333 345678889999976532 467788
Q ss_pred HHHHHHHhcCCCChh-----------------HHh-hccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchH-HHHH
Q 018602 200 EILSTLTLLFPLAGE-----------------ALT-YLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHR-RVNM 260 (353)
Q Consensus 200 ~AL~~L~~L~~~~~e-----------------~k~-~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~-~~~~ 260 (353)
.+|.+|.+++..+++ +-+ .+.+++.++.++.+|++.+...|.+|+.+|..|+...++ +.+.
T Consensus 81 ~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~ 160 (651)
T 3grl_A 81 YALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQI 160 (651)
T ss_dssp HHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 899999776553321 111 244788999999999999999999999999999866654 6666
Q ss_pred hhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc-CcHHHHHHHhhhcc----ccchhhhh
Q 018602 261 FLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLVDAQ----RSLCEKPW 333 (353)
Q Consensus 261 IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea-GaV~~LlelL~~~~----~~~~E~aL 333 (353)
|-..++.|+.||.+|.+. .-..+..|+..|.+|+..+ .+..++|.. |+++.|+.++.+.+ ..+++.+|
T Consensus 161 Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n----~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL 233 (651)
T 3grl_A 161 ILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSN----GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL 233 (651)
T ss_dssp HHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHH
T ss_pred HHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCC----HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHH
Confidence 656779999999999877 5567778999999999987 799999997 99999999997432 24667777
No 44
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.99 E-value=6.1e-11 Score=105.33 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=55.7
Q ss_pred cccCCchhhhhhhhhhHHhhhcccc-chhHHHHHhHHH-Hhhc-CCccccccccccCCceecCchhh--hhhhhh
Q 018602 39 QLTMPGKRHVRLINLAKWLVESAWV-ALRLFQERCEEE-LLWA-AEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 39 ~~~~~~~~~~~~c~l~~~~m~d~~~-~~~~~~eR~~~e-~~~g-~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
...+|++|. |||+.++|.|||+ +.|.+|+|..|+ ||.. ..+||+|+++|...+++||+.|+ |++|+.
T Consensus 100 ~~~ip~~f~---CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 100 KREIPDYLC---GKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp CCCCCGGGB---CTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred ccCCcHhhc---ccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence 455666665 9999999999997 458888888554 5543 34799999999999999999999 999997
No 45
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.87 E-value=2.3e-08 Score=106.07 Aligned_cols=162 Identities=10% Similarity=0.069 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHHHHhChhhhhHHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCCh------------
Q 018602 147 TGGRDLVAKIKKWIKESERNKRCIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAG------------ 213 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~~nR~~i~~a-G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~------------ 213 (353)
..+.-|++-|..++.+.+ .|..+++. |+++.|+.++.... +..+...++++|.|+....+
T Consensus 349 ~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~------d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~L 421 (778)
T 3opb_A 349 PKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQK------MTHCLYGLLVIMANLSTLPEEXXXXXXXXXXX 421 (778)
T ss_dssp HHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTC------CTTHHHHHHHHHHHTTCCCCCCCCCCC-----
T ss_pred cHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCC------CchHHHHHHHHHHHhcCCCcccchhhhhhhhh
Confidence 446679999999988654 67888776 89999999997632 23468889999999865211
Q ss_pred -------------------------h-HHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhch
Q 018602 214 -------------------------E-ALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGA 267 (353)
Q Consensus 214 -------------------------e-~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~ga 267 (353)
+ ++..+.+.|+++.|+.++++++...|+.|+.+|.+|| ..++++..+... |+
T Consensus 422 k~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqq-Ga 499 (778)
T 3opb_A 422 XXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQ-GA 499 (778)
T ss_dssp -------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHT-TH
T ss_pred hhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHC-CC
Confidence 1 4567778999999999999999999999999999998 447778888664 99
Q ss_pred HHHHHHhhcCCCCh--hHHHHHHHHHHHhhcCCCCCCchHHHHHH----cCcHHHHHHHhh
Q 018602 268 IESLYTLIKEPICP--TATEASFVVVYHMITSASAADKPIQKFVD----MGLVSLLLETLV 322 (353)
Q Consensus 268 i~~LV~lL~~~~s~--~a~k~Al~aL~nLc~~~~~~~~Nr~~~Ve----aGaV~~LlelL~ 322 (353)
++.|++++.++... .++..|+.+|.++.... |-..+.. .|+|++|+++|.
T Consensus 500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~-----np~~~f~~~~~~~aI~pLv~LL~ 555 (778)
T 3opb_A 500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFT-----NPGLIFKKYSALNAIPFLFELLP 555 (778)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS-----CHHHHSSSSCSTTHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC-----CHHHHcCCCccccchHHHHHHcC
Confidence 99999999877332 27889999999998653 3223221 399999999997
No 46
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=6.6e-10 Score=88.34 Aligned_cols=61 Identities=5% Similarity=-0.103 Sum_probs=50.9
Q ss_pred hhhhhhhHHhhhccccc--hhHHHHHh-HHHHhhc------CCcccccccc---ccCCceecCchhh--hhhhhh
Q 018602 48 VRLINLAKWLVESAWVA--LRLFQERC-EEELLWA------AEMIKIKAQD---LKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~--~~~~~eR~-~~e~~~g------~~tcP~T~q~---l~~~~l~pN~~L~--i~~w~~ 108 (353)
.+.|||+.++|+|||+. .+.+|+|. +.+||.. ..+||+|+.+ +...+|+||+.|+ |++|+.
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 35599999999999975 58888887 4446643 3599998887 8889999999999 999997
No 47
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=5e-09 Score=97.42 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=54.3
Q ss_pred ccCCchhhhhhhhhhHHhhhcccc-chhHHHHHhHHH-Hhh-cCCccccccccccCCceecCchhh--hhhhhh
Q 018602 40 LTMPGKRHVRLINLAKWLVESAWV-ALRLFQERCEEE-LLW-AAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 40 ~~~~~~~~~~~c~l~~~~m~d~~~-~~~~~~eR~~~e-~~~-g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
..+|++|. |||+.++|+|||+ +.|.+|+|..++ |+. ++.+||+|++++....++||+.|+ |++|+.
T Consensus 203 ~~~~~~~~---c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 203 RDIPDYLC---GKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCCSTTB---CTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred CCCCcccC---CcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 34555554 9999999999997 458888887544 554 455699999999999999999999 999997
No 48
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.33 E-value=8.3e-08 Score=72.79 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=53.5
Q ss_pred cCCchhhhhhhhhhHHhhhccccch-hHHHHHh-HHHHhh-cCCccccccccccCCceecCchhh--hhhhhh
Q 018602 41 TMPGKRHVRLINLAKWLVESAWVAL-RLFQERC-EEELLW-AAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 41 ~~~~~~~~~~c~l~~~~m~d~~~~~-~~~~eR~-~~e~~~-g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
.+|.++. |||..++|.||++.. +.+|.|. ..+|+. ++.+||.+++++...+++||+.|+ |++|+.
T Consensus 4 ~~~~~~~---C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 4 EFPEYFR---CPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CCSSSSS---CTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHH
T ss_pred CCcccCC---CCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHH
Confidence 4555555 999999999998754 7766655 555665 489999999999999999999999 999997
No 49
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.02 E-value=3.7e-05 Score=79.97 Aligned_cols=142 Identities=17% Similarity=0.173 Sum_probs=115.3
Q ss_pred HHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCC-hhHHhhc-cCCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 018602 170 IVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLA-GEALTYL-GSASSMHCMVWFLKSGDLSRRRNTVLVL 247 (353)
Q Consensus 170 i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~-~e~k~~l-~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL 247 (353)
+.+.+.++.|+.+|.+. +..++-.++..|..|.... ++.++.| ..|+.++.|+.+|+...-..|-.|+.+|
T Consensus 118 ~~~~~~i~~Ll~lL~~~-------df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 118 IKQQENVTLLLSLLEEF-------DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHSTHHHHHHHHHTTCC-------CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HcCCccHHHHHHHhcCc-------cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 44558899999999654 3567888888887764333 3366655 4899999999999988889999999999
Q ss_pred HHHhccchHHHHHhhhhhchHHHHHHhhcCC---CChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhh
Q 018602 248 REVISSDHRRVNMFLEIEGAIESLYTLIKEP---ICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 322 (353)
Q Consensus 248 ~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~---~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~ 322 (353)
-+|+..+.+...++.- +|+++.|+++++++ .......+++.+|.||.... ..|...+.|.|.++.|..+|.
T Consensus 191 ~~Lt~~n~~iQklVAF-EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N---~sNQ~~FrEt~~i~~L~~LL~ 264 (651)
T 3grl_A 191 QALTRSNGAIQKIVAF-ENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN---NSNQNFFKEGSYIQRMKPWFE 264 (651)
T ss_dssp HHHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTCGGGGGGGGC
T ss_pred HHHhcCCHHHHHHHHH-hccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC---HHHHHHHHHcCCHHHHHHHhC
Confidence 9999877787888844 59999999999753 12367899999999998764 369999999999999999985
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.99 E-value=7e-07 Score=83.30 Aligned_cols=70 Identities=10% Similarity=-0.000 Sum_probs=54.8
Q ss_pred cCCchhhhhhhhhhHHhhhccccc-h-hHHHHHhHH-HHhhc--CCcccccc--ccccCCceecCchhh--hhhhhhhh
Q 018602 41 TMPGKRHVRLINLAKWLVESAWVA-L-RLFQERCEE-ELLWA--AEMIKIKA--QDLKGKEVKVNTSLL--YQQTKFNL 110 (353)
Q Consensus 41 ~~~~~~~~~~c~l~~~~m~d~~~~-~-~~~~eR~~~-e~~~g--~~tcP~T~--q~l~~~~l~pN~~L~--i~~w~~~l 110 (353)
.+......+.|||+.++|+|||++ . |..|+|..+ .||.. ..+||+|+ +.+...+|+||+.|+ ++.|+...
T Consensus 174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~ 252 (267)
T 3htk_C 174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKE 252 (267)
T ss_dssp CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHH
T ss_pred eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHH
Confidence 333456677899999999999975 4 887877744 46643 46899966 999999999999998 88898733
No 51
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.73 E-value=0.00014 Score=76.37 Aligned_cols=169 Identities=8% Similarity=0.024 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHH-HhhcccccccchhHHHHHHHHHHHHh
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAA-AFESFSKTCLDEHVSVLEEILSTLTL 207 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~-~L~s~~~~~~~~~~~v~E~AL~~L~~ 207 (353)
++..+++++.++ ++..+..|+.-|..++. ++.+|+.+...|+|+.++. +|... +.+++++|..+|.+
T Consensus 35 ~i~Pll~~L~S~----~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~-------~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 35 KILPVLKDLKSP----DAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDN-------NIDSRAAGWEILKV 102 (684)
T ss_dssp TTHHHHHHHSSS----CCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCS-------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCC----CHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCC-------CHHHHHHHHHHHHH
Confidence 345678888653 55677889999999996 7789999888887766544 55432 56899999999999
Q ss_pred cCCC-ChhHHhhccCCCcHHHHHHHHhcCCH---------------------HHHHHHHHHHHHHhccchHHHHHhhhhh
Q 018602 208 LFPL-AGEALTYLGSASSMHCMVWFLKSGDL---------------------SRRRNTVLVLREVISSDHRRVNMFLEIE 265 (353)
Q Consensus 208 L~~~-~~e~k~~l~~~~~l~~Lv~~L~~gs~---------------------~~R~~Aa~lL~~Lss~~~~~~~~IG~~~ 265 (353)
|+.. ..+....+.+.+.++.|..+|++... ..-.++..+|-.|+..+++....+...
T Consensus 103 L~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~- 181 (684)
T 4gmo_A 103 LAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK- 181 (684)
T ss_dssp HHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC-
T ss_pred HHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc-
Confidence 8532 13444556678899999998865211 122467788888886666767677565
Q ss_pred chHHHHHHhhcC--CCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCc
Q 018602 266 GAIESLYTLIKE--PICPTATEASFVVVYHMITSASAADKPIQKFVDMGL 313 (353)
Q Consensus 266 gai~~LV~lL~~--~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGa 313 (353)
+.++.|+..|.+ .........|+.+|++++... ......+.+.|.
T Consensus 182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn---~~~~~~i~~~~~ 228 (684)
T 4gmo_A 182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDN---LKVGQAITDDQE 228 (684)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHTCCS
T ss_pred ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccC---HHHHHHHHhcch
Confidence 889999988743 234578889999999998854 234445555554
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.55 E-value=0.0032 Score=54.38 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=28.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM 294 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nL 294 (353)
.++.++..|++.+...|..|+..|-.+. . +++++.|+.+++++ ++.....|+.+|..+
T Consensus 108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~-~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 108 AVEPLIKALKDEDWFVRIAAAFALGEIG-----------D-ERAVEPLIKALKDE-DGWVRQSAADALGEI 165 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 4455555555445555555544444331 1 24555555555544 555555555555555
No 53
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.49 E-value=0.0025 Score=55.58 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=40.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
.++.++.+|++.+...|..|+..|-.+. . +++++.|+.+++++ ++.....|..+|..+..
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~------- 172 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALGEIG-----------D-ERAVEPLIKALKDE-DGWVRQSAADALGEIGG------- 172 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-------
Confidence 4444555554444444544444444331 1 14555555555544 55555555555555522
Q ss_pred hHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 304 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
..+++.|.+++.+.+..+-+.|.
T Consensus 173 -------~~~~~~L~~~l~d~~~~vr~~A~ 195 (211)
T 3ltm_A 173 -------ERVRAAMEKLAETGTGFARKVAV 195 (211)
T ss_dssp -------HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -------hhHHHHHHHHHhCCCHHHHHHHH
Confidence 12455666666655443433333
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.09 E-value=0.011 Score=51.03 Aligned_cols=126 Identities=16% Similarity=0.053 Sum_probs=93.7
Q ss_pred CCChHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHH
Q 018602 124 PMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILS 203 (353)
Q Consensus 124 p~~~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~ 203 (353)
+........+++.+.+ +++..+..|+..|..+.. .++++.|+..|... +..++..|+.
T Consensus 10 ~~~~~~~~~~i~~L~~----~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-------~~~vr~~a~~ 67 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-------DAWVRRAAAD 67 (201)
T ss_dssp CCCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-------SHHHHHHHHH
T ss_pred ccCCcchHHHHHHhcC----CCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC-------CHHHHHHHHH
Confidence 3455667777888855 356666677777665432 35689999999643 4578888888
Q ss_pred HHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhH
Q 018602 204 TLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTA 283 (353)
Q Consensus 204 ~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a 283 (353)
+|..+. .+..++.++..|.+.+...|..|+..|-.+. . +++++.|+.+++++ ++..
T Consensus 68 ~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~-~~~~~~L~~~l~d~-~~~v 123 (201)
T 3ltj_A 68 ALGQIG-----------DERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------D-ERAVEPLIKALKDE-DWFV 123 (201)
T ss_dssp HHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------C-GGGHHHHHHHTTCS-SHHH
T ss_pred HHHhhC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------c-HHHHHHHHHHHcCC-CHHH
Confidence 887652 3467899999999999999999999887653 2 26788899999877 8888
Q ss_pred HHHHHHHHHHhh
Q 018602 284 TEASFVVVYHMI 295 (353)
Q Consensus 284 ~k~Al~aL~nLc 295 (353)
...|+.+|-++.
T Consensus 124 r~~a~~aL~~~~ 135 (201)
T 3ltj_A 124 RIAAAFALGEIG 135 (201)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888887763
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.08 E-value=0.011 Score=51.35 Aligned_cols=121 Identities=17% Similarity=0.070 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 018602 128 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 207 (353)
Q Consensus 128 ~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~ 207 (353)
..+..|++.+.. .++..+..|+..|..+.. .++++.|+..|.+. +..++..|+.+|..
T Consensus 19 ~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-------~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 19 EKVEMYIKNLQD----DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-------DAWVRRAAADALGQ 76 (211)
T ss_dssp GGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcC----CCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC-------CHHHHHHHHHHHHh
Confidence 345555555542 244444555555544321 24567777766533 34566666666665
Q ss_pred cCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHH
Q 018602 208 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEAS 287 (353)
Q Consensus 208 L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~A 287 (353)
+. .++.++.++..|++.+...|..|+..|-.+. . +++++.|+.+++++ ++.....|
T Consensus 77 ~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-----------~-~~~~~~L~~~l~d~-~~~vr~~a 132 (211)
T 3ltm_A 77 IG-----------DERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------D-ERAVEPLIKALKDE-DWFVRIAA 132 (211)
T ss_dssp HC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------C-GGGHHHHHHHTTCS-SHHHHHHH
T ss_pred hC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------c-HHHHHHHHHHHhCC-CHHHHHHH
Confidence 41 2345677777777777777777766665542 2 25666777777655 66666667
Q ss_pred HHHHHHh
Q 018602 288 FVVVYHM 294 (353)
Q Consensus 288 l~aL~nL 294 (353)
+.+|.++
T Consensus 133 ~~aL~~~ 139 (211)
T 3ltm_A 133 AFALGEI 139 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7776666
No 56
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.72 E-value=0.0027 Score=66.49 Aligned_cols=162 Identities=10% Similarity=0.078 Sum_probs=110.1
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHH-HHHHhcCCHHHHHHHHHHHHHHhc
Q 018602 174 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCM-VWFLKSGDLSRRRNTVLVLREVIS 252 (353)
Q Consensus 174 G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~L-v~~L~~gs~~~R~~Aa~lL~~Lss 252 (353)
.+.|. +..|.+. ++..++.|+.+|.+|.. +.+.+.++...+.+..+ ..+|...+.+.|.+|+.+|.+|+.
T Consensus 35 ~i~Pl-l~~L~S~-------~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 35 KILPV-LKDLKSP-------DAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp TTHHH-HHHHSSS-------CCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHHcCCC-------CHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 44554 4667665 24568999999999964 67777777777777654 566777899999999999999984
Q ss_pred cc-hHHHHHhhhhhchHHHHHHhhcCC-------------CC-------hhHHHHHHHHHHHhhcCCCCCCchHHHHHHc
Q 018602 253 SD-HRRVNMFLEIEGAIESLYTLIKEP-------------IC-------PTATEASFVVVYHMITSASAADKPIQKFVDM 311 (353)
Q Consensus 253 ~~-~~~~~~IG~~~gai~~LV~lL~~~-------------~s-------~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea 311 (353)
.. .+.+..+-+. |+++.|..+++.. .. ......++.+|.+||... +++...++..
T Consensus 106 ~~g~d~~~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s---~~~~~~v~~~ 181 (684)
T 4gmo_A 106 EEEADFCVHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALAR---DEIHEAVATK 181 (684)
T ss_dssp HSCHHHHHHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHTC
T ss_pred hcCchHHHHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHhc
Confidence 42 3556656465 9999999988531 00 012345778899998764 3566778889
Q ss_pred CcHHHHHHHhhhccc---cchhhhh-----ccC-CHHHHHHHhccC
Q 018602 312 GLVSLLLETLVDAQR---SLCEKPW-----VFS-TDFAAVITGEER 348 (353)
Q Consensus 312 GaV~~LlelL~~~~~---~~~E~aL-----L~~-~~eGR~ai~~~~ 348 (353)
|.++.|+..|.+.+. .+...++ |+. ..+-...+.+++
T Consensus 182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~ 227 (684)
T 4gmo_A 182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQ 227 (684)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCC
T ss_pred ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcc
Confidence 999999999975432 3333344 332 344455555544
No 57
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.45 E-value=0.00074 Score=52.21 Aligned_cols=59 Identities=17% Similarity=0.006 Sum_probs=47.0
Q ss_pred hhhhhHHhhhccccch--hHHHH-HhHHHHhh--cCCccccccccc-cCCceecCchhh--hhhhhh
Q 018602 50 LINLAKWLVESAWVAL--RLFQE-RCEEELLW--AAEMIKIKAQDL-KGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 50 ~c~l~~~~m~d~~~~~--~~~~e-R~~~e~~~--g~~tcP~T~q~l-~~~~l~pN~~L~--i~~w~~ 108 (353)
.|||-.++|.||++.. +.+|- .+..+|+. ++.+||..++++ ....++||+.|+ |+.|..
T Consensus 15 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 15 LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp EETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred CCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 4999999999998754 77553 45556664 457999999998 466899999999 888886
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.41 E-value=0.095 Score=47.37 Aligned_cols=117 Identities=5% Similarity=-0.014 Sum_probs=75.2
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCc
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 224 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~ 224 (353)
++..+..++.-|..+...++.. ...+++.|...|.+. +..++..|+.+|..+. .++.
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~-------~~~vR~~a~~aL~~~~-----------~~~~ 160 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDK-------STNVRRATAFAISVIN-----------DKAT 160 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCS-------CHHHHHHHHHHHHTC--------------CC
T ss_pred CHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCC-------CHHHHHHHHHHHHhcC-----------CHHH
Confidence 4444555666666665433211 113567777777543 4567888877777642 2457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
++.++..|+..+...|..|+..|-.+.. ..+++++.|+.+++++ ++.....|+.+|-++.
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININKY----------DNSDIRDCFVEMLQDK-NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhcc----------CcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Confidence 8888888888888888888888766531 1135677788888766 6777777777777664
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.22 E-value=0.11 Score=46.86 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=40.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
.++.++..|++.+...|..|+..|-.+ |. +++++.|+.+++++ ++.....|..+|.++....
T Consensus 129 ~~~~L~~~l~d~~~~vR~~a~~aL~~~-----------~~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~----- 190 (280)
T 1oyz_A 129 IVEQSQITAFDKSTNVRRATAFAISVI-----------ND-KATIPLLINLLKDP-NGDVRNWAAFAININKYDN----- 190 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHTC---------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhc-----------CC-HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCc-----
Confidence 344444444444444444444444322 12 24666667666655 5566666666666653211
Q ss_pred hHHHHHHcCcHHHHHHHhhhcccc
Q 018602 304 PIQKFVDMGLVSLLLETLVDAQRS 327 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~~~~ 327 (353)
..+++.|+++|.+.+..
T Consensus 191 -------~~~~~~L~~~l~d~~~~ 207 (280)
T 1oyz_A 191 -------SDIRDCFVEMLQDKNEE 207 (280)
T ss_dssp -------HHHHHHHHHHTTCSCHH
T ss_pred -------HHHHHHHHHHhcCCCHH
Confidence 12556777777654433
No 60
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=95.83 E-value=0.37 Score=46.30 Aligned_cols=182 Identities=13% Similarity=0.137 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 018602 128 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 207 (353)
Q Consensus 128 ~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~ 207 (353)
-++..++.+|.+. +..+.+.++.+|+.+-.++...=.-|++.|.+..|+.+...+ +...+--+|++|..
T Consensus 118 ~ra~~iiekL~~~----~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-------~gN~q~Y~L~AL~~ 186 (339)
T 3dad_A 118 VRVNAILEKLYSS----SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-------DHNYQSYILRALGQ 186 (339)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-------ChHHHHHHHHHHHH
Confidence 5677888888753 446778899999994444444444455556688888988655 23568899999998
Q ss_pred cCCCChhHHh-hccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhh-------hhc--hHHHHHHhhc-
Q 018602 208 LFPLAGEALT-YLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLE-------IEG--AIESLYTLIK- 276 (353)
Q Consensus 208 L~~~~~e~k~-~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~-------~~g--ai~~LV~lL~- 276 (353)
|.. ...... ++..+.+|..+..++.+.....-..|..+|+.+...++.+...+-. ..| .+.-||.+|.
T Consensus 187 LM~-~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~ 265 (339)
T 3dad_A 187 LML-FVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEE 265 (339)
T ss_dssp HTT-SHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTT
T ss_pred HHh-ccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhc
Confidence 853 555554 5557889999999999777777778999999987555533333311 111 3668999997
Q ss_pred -CCCChhHHHHHHHHHHHhhcCCCCCCchHHHHH----HcCcHHHHHHHhh
Q 018602 277 -EPICPTATEASFVVVYHMITSASAADKPIQKFV----DMGLVSLLLETLV 322 (353)
Q Consensus 277 -~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~V----eaGaV~~LlelL~ 322 (353)
++.++.....|+..+-.+...-+. .+.+..++ +.|.-..+..+|.
T Consensus 266 ~~~~D~elq~~amtLIN~lL~~apd-~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 266 KNGADPELLVYTVTLINKTLAALPD-QDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCSS-HHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHccHHHHHHHHHh
Confidence 333666666666555544221100 02233333 4465566666664
No 61
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.65 E-value=0.043 Score=44.38 Aligned_cols=88 Identities=9% Similarity=0.011 Sum_probs=68.5
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 018602 175 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 254 (353)
Q Consensus 175 ~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~ 254 (353)
.++.|...|.+. +..++..|+.+|..+. .+..++.++..|+..+...|..|+..|-.+.
T Consensus 43 ~~~~L~~~L~d~-------~~~vR~~A~~aL~~~~-----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--- 101 (131)
T 1te4_A 43 AFEPLLESLSNE-------DWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG--- 101 (131)
T ss_dssp THHHHHHGGGCS-------CHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCC-------CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 368888888643 4678999999988762 2346899999999999999999998887653
Q ss_pred hHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHH
Q 018602 255 HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYH 293 (353)
Q Consensus 255 ~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~n 293 (353)
. +++++.|+.+++++ ++.....|..+|..
T Consensus 102 --------~-~~a~~~L~~~l~d~-~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 102 --------G-ERVRAAMEKLAETG-TGFARKVAVNYLET 130 (131)
T ss_dssp --------S-HHHHHHHHHHTTSC-CTHHHHHHHHHGGG
T ss_pred --------c-HHHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2 36789999999876 77888888877754
No 62
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.35 E-value=0.2 Score=44.50 Aligned_cols=167 Identities=12% Similarity=0.126 Sum_probs=108.9
Q ss_pred CChhhHHHHHHHHHHHHHhChhhh-hHHHhcCCHHHHHHHhh-cccccccchhHHHHHHHHHHHHhcCCCChhHHhhcc-
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNK-RCIVDYGAVSVLAAAFE-SFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG- 220 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR-~~i~~aG~i~~Lv~~L~-s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~- 220 (353)
.+...+.+|+..|..+.+..+..- ..+ ..+++.|...+. . .+..+++.|+.+|..|+. ..+..+.
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd-------~~~~V~~~a~~~l~~la~---~l~~~~~~ 94 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKD-------SNVVLVAMAGKCLALLAK---GLAKRFSN 94 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHC-------SCHHHHHHHHHHHHHHHH---HHGGGGHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccC-------CCHHHHHHHHHHHHHHHH---HHhhhHHH
Confidence 356778889999999998743210 000 134566666663 3 256788888888887642 1222222
Q ss_pred -CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 018602 221 -SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSAS 299 (353)
Q Consensus 221 -~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~ 299 (353)
-+..++.+...|+..+...|..|..+|..+.... ..+.+++.|...+++. +++.+..++..|-.+.....
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYAST--------SLEAQQESIVESLSNK-NPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 1347899999999999999999999999997431 1235788888889876 89999999999999644320
Q ss_pred CCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 300 AADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 300 ~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
........ .. -.++.|++.|.|....+-+.|.
T Consensus 166 ~~~~~~~~-l~-~l~p~l~~~l~D~~~~VR~~A~ 197 (242)
T 2qk2_A 166 PTALNKKL-LK-LLTTSLVKTLNEPDPTVRDSSA 197 (242)
T ss_dssp GGGCCHHH-HH-HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCCccHHH-HH-HHHHHHHHHhcCCChHHHHHHH
Confidence 00011222 22 4788888888766544444443
No 63
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.44 E-value=0.28 Score=51.78 Aligned_cols=168 Identities=8% Similarity=0.095 Sum_probs=106.9
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHh-------cCCHHHHHHHhhcccccccchhHHHHHHHH
Q 018602 130 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVD-------YGAVSVLAAAFESFSKTCLDEHVSVLEEIL 202 (353)
Q Consensus 130 v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~-------aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL 202 (353)
+..+++.+.+ ++...+..++.-+..++++.+. .+.. .+++|.|+..+.+ .+.+++..|+
T Consensus 130 l~~L~~~l~~----~~~~~r~~al~~L~~i~~~~~~---~~~~~~~~~~~~~il~~l~~~l~~-------~~~~vR~~A~ 195 (852)
T 4fdd_A 130 LPKLCSLLDS----EDYNTCEGAFGALQKICEDSAE---ILDSDVLDRPLNIMIPKFLQFFKH-------SSPKIRSHAV 195 (852)
T ss_dssp HHHHHHHHSC----SSHHHHHHHHHHHHHHHHHHTT---HHHHCSSSSCHHHHHHHHTTTTTC-------SSHHHHHHHH
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhHH---HhchhhhcchHHHHHHHHHHHhcC-------CCHHHHHHHH
Confidence 3444554433 3555566788888888876543 2221 1244555444432 2567899999
Q ss_pred HHHHhcCCCChhHHhhcc-CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCCh
Q 018602 203 STLTLLFPLAGEALTYLG-SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICP 281 (353)
Q Consensus 203 ~~L~~L~~~~~e~k~~l~-~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~ 281 (353)
.+|..+..... +.... -+..++.+...+..++.+.|..|+..|..++...+... ....+++++.++.++++. ++
T Consensus 196 ~aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~--~~~l~~l~~~l~~~~~~~-~~ 270 (852)
T 4fdd_A 196 ACVNQFIISRT--QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL--LPHMHNIVEYMLQRTQDQ-DE 270 (852)
T ss_dssp HHHHTTTTTTC--HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH--GGGHHHHHHHHHHHHTCS-SH
T ss_pred HHHHHHHhccc--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHHHHHccCC-cH
Confidence 99987643221 12211 13578889998989999999999999999985433221 112246788888888776 78
Q ss_pred hHHHHHHHHHHHhhcCCCCCCchHHHHHHc---CcHHHHHHHh
Q 018602 282 TATEASFVVVYHMITSASAADKPIQKFVDM---GLVSLLLETL 321 (353)
Q Consensus 282 ~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea---GaV~~LlelL 321 (353)
..+..|+.++.++|... ...+.++. ..++.+++.+
T Consensus 271 ~vr~~a~e~l~~l~~~~-----~~~~~~~~~~~~l~p~ll~~l 308 (852)
T 4fdd_A 271 NVALEACEFWLTLAEQP-----ICKDVLVRHLPKLIPVLVNGM 308 (852)
T ss_dssp HHHHHHHHHHHHHTTST-----THHHHHTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHHHc
Confidence 88999999999998753 22233322 3566666666
No 64
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.33 E-value=0.57 Score=43.12 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 129 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 129 ~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
.+..++..+-...++.|..-...|++-|+.+-..-+-...++.. ++.+|.+++.+. +.-.+++|...|-.|
T Consensus 72 ~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~-------~~il~~eaae~Lgkl 142 (265)
T 3b2a_A 72 VLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESP-------DDMMRIETIDVLSKL 142 (265)
T ss_dssp HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSC-------CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCC-------CchHHHHHHHHhCcC
Confidence 34444555443334455544556666676666665544444443 356677777643 334677777777665
Q ss_pred CCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHH
Q 018602 209 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 288 (353)
Q Consensus 209 ~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al 288 (353)
.+.+ -.++.+..+..++.+.+.+.|..|..++.++++.+++ ++.+ ++++.++-.+|+.. +|...+-|+
T Consensus 143 kv~~-------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D-~~i~---~~I~~eI~elL~~e-D~~l~e~aL 210 (265)
T 3b2a_A 143 QPLE-------DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD-SGHL---TLILDEIPSLLQND-NEFIVELAL 210 (265)
T ss_dssp CBSC-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS-CCCG---GGTTTTHHHHHTCS-CHHHHHHHH
T ss_pred Cccc-------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC-HHHH---HHHHHHHHHHHcCC-CHHHHHHHH
Confidence 2211 1345788888889888999999999999999966432 2333 36777888888877 899999999
Q ss_pred HHHHHhhcCC
Q 018602 289 VVVYHMITSA 298 (353)
Q Consensus 289 ~aL~nLc~~~ 298 (353)
.+|..+.+.+
T Consensus 211 d~Le~ils~p 220 (265)
T 3b2a_A 211 DVLEKALSFP 220 (265)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHHcCc
Confidence 9999997764
No 65
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.15 E-value=0.25 Score=48.80 Aligned_cols=121 Identities=10% Similarity=0.062 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHhcCCC-ChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHH
Q 018602 194 HVSVLEEILSTLTLLFPL-AGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLY 272 (353)
Q Consensus 194 ~~~v~E~AL~~L~~L~~~-~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV 272 (353)
+..+++.|+.+|..+... ..+ .. -...++.+..+++..+...|..|+.++-.++..... ... .+.+++.|+
T Consensus 454 ~~~Vr~~a~~~l~~l~~~~~~~--~~--~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--~~~--~~~~~~~l~ 525 (588)
T 1b3u_A 454 VYAIREAATSNLKKLVEKFGKE--WA--HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DIT--TKHMLPTVL 525 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCHH--HH--HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--HHH--HHHTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCch--hH--HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHH
Confidence 457888888888766321 111 01 234678888888888999999999999888632111 111 236889999
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccch
Q 018602 273 TLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLC 329 (353)
Q Consensus 273 ~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~ 329 (353)
++++++ ++..+..++.+|-.++..- +. .......++.|.+++.|.+..+-
T Consensus 526 ~~l~d~-~~~Vr~~a~~~l~~l~~~~---~~---~~~~~~~~p~l~~l~~d~d~~vr 575 (588)
T 1b3u_A 526 RMAGDP-VANVRFNVAKSLQKIGPIL---DN---STLQSEVKPILEKLTQDQDVDVK 575 (588)
T ss_dssp HGGGCS-CHHHHHHHHHHHHHHGGGS---CH---HHHHHHHHHHHHHHTTCSSHHHH
T ss_pred hhCCCC-CchHHHHHHHHHHHHHHHh---ch---hhhHHHHHHHHHHHcCCCchhHH
Confidence 999887 7888889999999998753 12 23334466667676665554433
No 66
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.08 E-value=0.73 Score=40.75 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHhChh-hhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcH
Q 018602 147 TGGRDLVAKIKKWIKESER-NKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSM 225 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~~-nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l 225 (353)
..+..|+.-+..+++.-.. ...++ .-++|.|...+... +..+++.|..+|..+.... . -...+
T Consensus 72 ~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ll~~l~d~-------~~~vr~~a~~aL~~~~~~~-~------~~~ll 135 (242)
T 2qk2_A 72 VLVAMAGKCLALLAKGLAKRFSNYA--SACVPSLLEKFKEK-------KPNVVTALREAIDAIYAST-S------LEAQQ 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHGGGCC-------CHHHHHHHHHHHHHHHTTS-C------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHcC-C------HHHHH
Confidence 3444566677777754221 11111 12566666666433 4578888888887764311 1 12368
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccc-hH--HHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 226 HCMVWFLKSGDLSRRRNTVLVLREVISSD-HR--RVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 226 ~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~-~~--~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
+.+...|++.++..|.+++..|-.+.... ++ ....+ +.+++.|+.++.+. ++..++.|..++-.++..
T Consensus 136 ~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l---~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL---KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH---HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH---HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999954232 22 12222 46899999999877 888999999999988754
No 67
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.01 E-value=0.51 Score=49.73 Aligned_cols=171 Identities=13% Similarity=0.136 Sum_probs=105.4
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCC-hhHH-hhcc--
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLA-GEAL-TYLG-- 220 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~-~e~k-~~l~-- 220 (353)
+..-+..+..-+..+++.+..++ -.++++.|+..+.+. +..+++.++.+|..++... +... ..+.
T Consensus 103 ~~~vr~~~a~~i~~ia~~~~~~~----wp~ll~~L~~~l~~~-------~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~ 171 (852)
T 4fdd_A 103 SPLIRATVGILITTIASKGELQN----WPDLLPKLCSLLDSE-------DYNTCEGAFGALQKICEDSAEILDSDVLDRP 171 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTT----CTTHHHHHHHHHSCS-------SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred CHHHHHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence 33445567777777777653211 136788888888654 3467888888887764210 1111 1111
Q ss_pred CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCC
Q 018602 221 SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASA 300 (353)
Q Consensus 221 ~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~ 300 (353)
-...++.++..+++.+.+.|..|+..|..+...... ......+++++.|..++.++ ++..++.|..+|..++...
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~--~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~-- 246 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ--ALMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVR-- 246 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH--HHHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhC--
Confidence 123567777777888999999999999877533221 12223347889999988877 8899999999999997643
Q ss_pred CCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 301 ADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 301 ~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
.+.-...+ .+.++.+++.+.+.+..+...++
T Consensus 247 -~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~ 277 (852)
T 4fdd_A 247 -MDRLLPHM-HNIVEYMLQRTQDQDENVALEAC 277 (852)
T ss_dssp -HHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred -HHHHHHHH-HHHHHHHHHHccCCcHHHHHHHH
Confidence 01111111 13667777777655544555554
No 68
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=93.98 E-value=0.58 Score=44.94 Aligned_cols=121 Identities=13% Similarity=0.221 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC
Q 018602 198 LEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE 277 (353)
Q Consensus 198 ~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~ 277 (353)
...+|--|..++..|.+--.-..+.+.+.+|+.+...|+-....++..++.+|....+-.-.+| +.+.+|.-++.++..
T Consensus 135 lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv-s~~~fI~~lyslv~s 213 (339)
T 3dad_A 135 LRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV-AHSDTIQWLYTLCAS 213 (339)
T ss_dssp HHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH-HCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh-CCHHHHHHHHHHHcC
Confidence 4445555544222233323333455669999999999999999999999999985534444556 456899999999985
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc--------C--cHHHHHHHhhh
Q 018602 278 PICPTATEASFVVVYHMITSASAADKPIQKFVDM--------G--LVSLLLETLVD 323 (353)
Q Consensus 278 ~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea--------G--aV~~LlelL~~ 323 (353)
..+...+.|+..|..+|.+. +.|..-+.++ | ..+.|+++|.+
T Consensus 214 -~~~~V~k~AL~LL~v~V~~s---e~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~ 265 (339)
T 3dad_A 214 -LSRLVVKTALKLLLVFVEYS---ENNAPLFIRAVNSVASTTGAPPWANLVSILEE 265 (339)
T ss_dssp -SCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTT
T ss_pred -ccHHHHHHHHHHHHHHHccC---cccchHHHHHHHHhhhccCCCcHHHHHHHHhc
Confidence 47889999999999999875 2355443332 1 36789999973
No 69
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.83 E-value=0.39 Score=43.59 Aligned_cols=172 Identities=6% Similarity=0.063 Sum_probs=110.6
Q ss_pred ChhhHHHHHHHHHH-HHHhChhhhhHHH-hc---CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHH-hh
Q 018602 145 DQTGGRDLVAKIKK-WIKESERNKRCIV-DY---GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEAL-TY 218 (353)
Q Consensus 145 d~~~~~~Al~~Lr~-Lakes~~nR~~i~-~a---G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k-~~ 218 (353)
+..++.+|+..|.. +....++ .+. .. .++..|...+.. +.|..+++.|+.+|..|+ ...+ ..
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~---i~~~~~~~~~~~~~L~~~l~~------D~n~~v~~~A~~al~~la---~~l~~~~ 96 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKK---LKSTSQNYSNLLGIYGHIIQK------DANIQAVALAAQSVELIC---DKLKTPG 96 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCC---BCCTTCCCHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHH---HHHCTTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCc---cccCcccHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHH---Hhccccc
Confidence 56788889999999 8764332 221 11 245555555522 236778888888888764 2222 22
Q ss_pred cc-C--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 018602 219 LG-S--ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 219 l~-~--~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
+. . ...++.++..++......|..|..+|..+....+... .-+..+.+++.|...+++. .|+.+..++.+|..++
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~-~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA-SSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASM 174 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC-TTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc-cCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHH
Confidence 22 1 2368889998988888888888888888863211100 0011346889999999877 8899999999999997
Q ss_pred cCCCCCCchHH---HHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 296 TSASAADKPIQ---KFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 296 ~~~~~~~~Nr~---~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
... +..-. ..+.-..++.|.+.+.|.++.+-+.|.
T Consensus 175 ~~~---~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~ 212 (249)
T 2qk1_A 175 KEE---KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGF 212 (249)
T ss_dssp HHC---CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHc---CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 543 11112 223246889999999877655555555
No 70
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=93.65 E-value=0.016 Score=45.27 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=49.9
Q ss_pred hhhhhhhHHhhhccccc-h-hHHH-HHhHHHHhhcCCccccccccccCCceecCchhh--hhhhhh
Q 018602 48 VRLINLAKWLVESAWVA-L-RLFQ-ERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~-~-~~~~-eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
.+.|||-.+.+.+|++. . +.++ ..+...|+..+.+||.-++++...+++||..|+ ++.|+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 34599999999999754 4 6643 456777888889999999999888999999999 888875
No 71
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=93.58 E-value=0.013 Score=47.86 Aligned_cols=61 Identities=15% Similarity=-0.019 Sum_probs=46.7
Q ss_pred hhhhhhhHHhhhccccch-hHHHHH-hHHHHhh-cCCccccccccccC-CceecCchhh--hhhhhh
Q 018602 48 VRLINLAKWLVESAWVAL-RLFQER-CEEELLW-AAEMIKIKAQDLKG-KEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~~-~~~~eR-~~~e~~~-g~~tcP~T~q~l~~-~~l~pN~~L~--i~~w~~ 108 (353)
.+.|||-.+.+.+|++.+ +.++-+ +...|+. +..+||.-++++.. ..++||+.|+ ++.|.-
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 345999999999998765 775544 4555665 45599999999987 7899999999 666553
No 72
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=93.33 E-value=1.6 Score=42.95 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=100.1
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhHHhhccCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEALTYLGSA 222 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~-~~~e~k~~l~~~ 222 (353)
.++..+..|++.+..+++..+.. .....++|.|..++... +..+++.|+.+|..+.. .+++. ..+
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~-------~~~vr~~a~~~l~~l~~~~~~~~----~~~ 241 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDE-------QDSVRLLAVEACVNIAQLLPQED----LEA 241 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCS-------CHHHHTTHHHHHHHHHHHSCHHH----HHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHhCCHHH----HHH
Confidence 35555666777777777654422 11235677777766432 35678888877766532 11111 113
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCC
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 302 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~ 302 (353)
..++.+..+++..+...|..|+..|-.+....+. +.. .+.+++.++++++++ ++..++.|..+|-.++..-+ .
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~--~ 314 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EIT--KTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLS--A 314 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHH--HHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSC--T
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccc--hhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhC--h
Confidence 4688888888888999999999999988732111 111 236899999999877 78888889999998876431 1
Q ss_pred chHHHHHHcCcHHHHHHHhhhc
Q 018602 303 KPIQKFVDMGLVSLLLETLVDA 324 (353)
Q Consensus 303 ~Nr~~~VeaGaV~~LlelL~~~ 324 (353)
..+..-.-..+++.+.+++.+.
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~ 336 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDA 336 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCS
T ss_pred hhhhhHHHHHHHHHHHHHhcCC
Confidence 1222222334566666666544
No 73
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=93.17 E-value=0.41 Score=48.70 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=99.7
Q ss_pred CChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCC
Q 018602 144 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 223 (353)
Q Consensus 144 ~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~ 223 (353)
.++.-+..|+.-+..+.+.+++ .+...|+++.|..+|... +..++..|+.+|..+...+.+....-..++
T Consensus 133 ~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~-------d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~ 202 (591)
T 2vgl_B 133 EDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS-------NPMVVANAVAALSEISESHPNSNLLDLNPQ 202 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS-------CHHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred CChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC-------ChhHHHHHHHHHHHHHhhCCCccchhccHH
Confidence 4666777788888888886653 444467889999998543 467999999999988543221110111234
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
.+..++..|...+.-.+.....+|..+....+. ....+++.+..++++. ++.-...|..++.++...-+. ..
T Consensus 203 ~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~------~~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~-~~ 274 (591)
T 2vgl_B 203 NINKLLTALNECTEWGQIFILDCLSNYNPKDDR------EAQSICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPK-DS 274 (591)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH------HHHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCB-TT
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCC-CH
Confidence 577777777777777666666666555422221 1136788888888766 677888888999888631000 01
Q ss_pred hHHHHHHcCcHHHHHHHhh
Q 018602 304 PIQKFVDMGLVSLLLETLV 322 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~ 322 (353)
...+.+-..++++|+.++.
T Consensus 275 ~~~~~~~~~~~~~L~~L~~ 293 (591)
T 2vgl_B 275 DYYNMLLKKLAPPLVTLLS 293 (591)
T ss_dssp BSHHHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 2222233345566665553
No 74
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=92.63 E-value=0.77 Score=46.66 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 018602 194 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 273 (353)
Q Consensus 194 ~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~ 273 (353)
|+.++..|+.+|..+. ..+.- +..++.+...|.+.+...|..|+..+..+....++ .+ ...++++.|..
T Consensus 99 n~~ir~~AL~~L~~i~--~~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~-~~~~~~~~l~~ 167 (591)
T 2vgl_B 99 NPLIRALAVRTMGCIR--VDKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MV-EDQGFLDSLRD 167 (591)
T ss_dssp SHHHHHHHHHHHHTCC--SGGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--hHHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hc-ccccHHHHHHH
Confidence 5778889999998863 22211 23467789999999999999999999999755443 22 22379999999
Q ss_pred hhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 274 LIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 274 lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
+|.++ ++.....|+.+|.+++...
T Consensus 168 lL~d~-d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 168 LIADS-NPMVVANAVAALSEISESH 191 (591)
T ss_dssp TTSCS-CHHHHHHHHHHHHHHTTSC
T ss_pred HhCCC-ChhHHHHHHHHHHHHHhhC
Confidence 99877 8899999999999998764
No 75
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=92.35 E-value=0.034 Score=47.24 Aligned_cols=61 Identities=13% Similarity=-0.109 Sum_probs=46.9
Q ss_pred hhhhhhhHHhhhccccch-hHHH-HHhHHHHhhc-CCccccccccccCC-ceecCchhh--hhhhhh
Q 018602 48 VRLINLAKWLVESAWVAL-RLFQ-ERCEEELLWA-AEMIKIKAQDLKGK-EVKVNTSLL--YQQTKF 108 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~g-~~tcP~T~q~l~~~-~l~pN~~L~--i~~w~~ 108 (353)
.+.|||-.+++.||++.. +.+| ..+..+|+.. ..+||..++++... .+.||..|+ +..|..
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 455999999999999765 6644 3455566654 45899999999977 899999999 666654
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.21 E-value=3 Score=37.65 Aligned_cols=138 Identities=8% Similarity=0.057 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHHhCh--hhh-hHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhcc--C
Q 018602 147 TGGRDLVAKIKKWIKESE--RNK-RCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG--S 221 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~--~nR-~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~--~ 221 (353)
..+..|+.-|..+++.-. ... .+... ++|.++..+... ...+++.+-.+|..++..- +..... =
T Consensus 76 ~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~dk-------k~~V~~aa~~al~~i~~~~--~~~~~~~~l 144 (249)
T 2qk1_A 76 QAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKEK-------KPSVIEAIRKALLTICKYY--DPLASSGRN 144 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGCC-------CHHHHHHHHHHHHHHHHHS--CTTCTTCTT
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHHc--cccccCCcH
Confidence 334456666666664321 111 22222 456666666433 3457777666666553100 011110 1
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhh-hh-hchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 222 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFL-EI-EGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 222 ~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG-~~-~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
...++.+...|++.++..|+.++..|-.+..........+. .. +.+++.|.+++.+. ++..++.|..+|-.++.
T Consensus 145 ~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 145 EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 24788999999999999999999999988733221101221 23 57899999999877 88899999999888875
No 77
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.02 E-value=3.5 Score=42.10 Aligned_cols=155 Identities=11% Similarity=0.113 Sum_probs=98.7
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCc
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 224 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~ 224 (353)
++-.+...++-++.++..++... ..+.+.|..++.+..... ..+..+.-+|+.++..+.+ +...+. .+
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~-~~~~aV~~ea~~~i~~l~~-~~~l~~-----~a 314 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSK-NVGNAILYETVLTIMDIKS-ESGLRV-----LA 314 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSS-THHHHHHHHHHHHHHHSCC-CHHHHH-----HH
T ss_pred CChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHhcCC-CHHHHH-----HH
Confidence 45556667777888877665322 235667766664321000 1234677777787777632 222221 35
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCch
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKP 304 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~N 304 (353)
++.+..+|.+++...|..|...|..+... ....+ ......++..+.++ ++.-++.|+.+|+.++.. .|
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~---~p~~~---~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~-----~n 382 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQT---DHNAV---QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNG-----NN 382 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHH---HHHHH---GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCS-----SS
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhh---CHHHH---HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccc-----cc
Confidence 67888889888889999998888888633 22233 24566777888776 778888999999999886 47
Q ss_pred HHHHHHcCcHHHHHHHhhhccccc
Q 018602 305 IQKFVDMGLVSLLLETLVDAQRSL 328 (353)
Q Consensus 305 r~~~VeaGaV~~LlelL~~~~~~~ 328 (353)
...+ +..|++.+.+.+...
T Consensus 383 v~~i-----v~eL~~~l~~~d~e~ 401 (618)
T 1w63_A 383 IRGM-----MKELLYFLDSCEPEF 401 (618)
T ss_dssp THHH-----HHHHHHHHHHCCHHH
T ss_pred HHHH-----HHHHHHHHHhCCHHH
Confidence 6554 466777776544333
No 78
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=91.96 E-value=4.2 Score=37.62 Aligned_cols=147 Identities=8% Similarity=0.074 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC-CCChhHHhhccCCCcHH
Q 018602 148 GGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF-PLAGEALTYLGSASSMH 226 (353)
Q Consensus 148 ~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~-~~~~e~k~~l~~~~~l~ 226 (353)
....|+.-+..+|. +++-|..+.++.+.-.|-.+|...+.. .....++=.+|+++..|. ..|.+--.-+.+.+.+|
T Consensus 72 RVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~--r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiip 148 (268)
T 2fv2_A 72 RVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKT--RPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIP 148 (268)
T ss_dssp HHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCS--HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCC--CcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHH
Confidence 33557878888886 667899999999998898888665321 112334556666665543 23444444455788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhc-------hHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 227 CMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEG-------AIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 227 ~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~g-------ai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
...+++..|+--+|.-|+-++..+... |.-..-+-...+ .+..+|.-+.+..+++..|....+-..||..+
T Consensus 149 lCLrime~GselSKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 149 LCLRIMESGSELSKTVATFILQKILLD-DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHhcc-chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999998744 422222212112 33334433333449999999999999999875
No 79
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=91.18 E-value=0.37 Score=38.72 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=60.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
.++.|+..|++.+...|..|+..|-.+. . +++++.|+..++++ ++.....|..+|-++...
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~-----------~-~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~~------ 103 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQ-----------D-ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGGE------ 103 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGC-----------S-HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCSH------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCcH------
Confidence 3799999999999999999998876552 2 26789999999877 888899999998887431
Q ss_pred hHHHHHHcCcHHHHHHHhhhccccc
Q 018602 304 PIQKFVDMGLVSLLLETLVDAQRSL 328 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~~~~~ 328 (353)
.+++.|+++|.+.+..+
T Consensus 104 --------~a~~~L~~~l~d~~~~v 120 (131)
T 1te4_A 104 --------RVRAAMEKLAETGTGFA 120 (131)
T ss_dssp --------HHHHHHHHHTTSCCTHH
T ss_pred --------HHHHHHHHHHhCCCHHH
Confidence 25788888887654433
No 80
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=90.88 E-value=1.2 Score=45.71 Aligned_cols=111 Identities=19% Similarity=0.140 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 018602 194 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 273 (353)
Q Consensus 194 ~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~ 273 (353)
|+.++..|+.+|..+.. .+ + .+..++.+...|++.+...|..|+..+..+....++ .+ +++++.|..
T Consensus 120 n~~vr~lAL~~L~~i~~--~~---~--~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v---~~~~~~l~~ 186 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGS--SE---M--CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM---EMFLPATKN 186 (618)
T ss_dssp SSHHHHHHHHHHHHHCC--HH---H--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG---GGGGGGTTT
T ss_pred CHhHHHHHHHHHHhcCC--HH---H--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH---HHHHHHHHH
Confidence 56788999999998842 22 1 134688899999999999999999999999754343 23 368888888
Q ss_pred hhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhh
Q 018602 274 LIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD 323 (353)
Q Consensus 274 lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~ 323 (353)
+|.+. +|...-.|+.+|..++... ....... ...++.++++|.+
T Consensus 187 lL~D~-d~~V~~~Al~~L~~i~~~~----~~~~~~~-~~~v~~l~~~L~~ 230 (618)
T 1w63_A 187 LLNEK-NHGVLHTSVVLLTEMCERS----PDMLAHF-RKLVPQLVRILKN 230 (618)
T ss_dssp STTCC-CHHHHHHHHHHHHHHCCSH----HHHHHHH-HTTHHHHHHHHHH
T ss_pred HhCCC-CHhHHHHHHHHHHHHHHhC----hHHHHHH-HHHHHHHHHHHHH
Confidence 99877 8888999999999998753 1111222 2577878877753
No 81
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=90.50 E-value=0.057 Score=42.75 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=48.1
Q ss_pred hhhhhhhHHhhhccccc-h-hHHH-HHhHHHHhhcCCccccccccccCC----ceecCchhh--hhhhhh
Q 018602 48 VRLINLAKWLVESAWVA-L-RLFQ-ERCEEELLWAAEMIKIKAQDLKGK----EVKVNTSLL--YQQTKF 108 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~-~-~~~~-eR~~~e~~~g~~tcP~T~q~l~~~----~l~pN~~L~--i~~w~~ 108 (353)
.+.|||-.+.+.||++. . +..+ ..+...|+..+.+||.-++.+... .+.+|..|. +..|..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 34599999999999864 4 6644 456777888889999999998865 789999999 666654
No 82
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=90.45 E-value=1.3 Score=42.10 Aligned_cols=172 Identities=10% Similarity=0.025 Sum_probs=97.7
Q ss_pred ChhhHHHHHHHHHHHHHhChhh-hhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHH-------
Q 018602 145 DQTGGRDLVAKIKKWIKESERN-KRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEAL------- 216 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~n-R~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k------- 216 (353)
+...+..+++-+..++...+.. +..+.. ++++.++..+... +..++..|+..+..+.....+..
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~-------~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~ 301 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSD-------IDEVALQGIEFWSNVCDEEMDLAIEASEAA 301 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHHCS-------SHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC-------chHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4444455666666666655421 111211 5566666555432 34677788877766531100000
Q ss_pred --------h---hcc--CCCcHHHHHHHHhcC-------CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc
Q 018602 217 --------T---YLG--SASSMHCMVWFLKSG-------DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK 276 (353)
Q Consensus 217 --------~---~l~--~~~~l~~Lv~~L~~g-------s~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~ 276 (353)
. .+. -+..++.+...|... +...|..|+.+|..|+.... ...+ +.+++.+...++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~---~~~~~~l~~~l~ 376 (462)
T 1ibr_B 302 EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV---PHVLPFIKEHIK 376 (462)
T ss_dssp CSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH---HHHHHHHHHHTT
T ss_pred ccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH---HHHHHHHHHHhc
Confidence 0 000 023456666666542 35678999999999874322 1222 356777778887
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 277 EPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 277 ~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
+. +++.+++|+.+|-+++... .....+-.-..+++.|+..|.|....+-..|.
T Consensus 377 ~~-~~~~r~aal~~l~~l~~~~---~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~ 429 (462)
T 1ibr_B 377 NP-DWRYRDAAVMAFGCILEGP---EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (462)
T ss_dssp CS-SHHHHHHHHHHHHHTSSSS---CTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 66 8899999999999998643 11110001146889999999776544444444
No 83
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.99 E-value=6.4 Score=40.64 Aligned_cols=151 Identities=9% Similarity=-0.061 Sum_probs=98.0
Q ss_pred ChHHHHHHHHHH-HhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHH
Q 018602 126 SSVEVLEINSKI-TAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILST 204 (353)
Q Consensus 126 ~~~~v~~ll~~l-~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~ 204 (353)
+..++..++... .++ |...+.+|-..|..+.+.+ ..|+...|+..+.+.. .+..++.-|.-+
T Consensus 2 d~~~l~~~L~~~~~s~----d~~~r~~Ae~~L~~~~~~~--------~~~~~~~l~~il~~~~-----~~~~vR~~A~~~ 64 (861)
T 2bpt_A 2 STAEFAQLLENSILSP----DQNIRLTSETQLKKLSNDN--------FLQFAGLSSQVLIDEN-----TKLEGRILAALT 64 (861)
T ss_dssp CHHHHHHHHHHHHHCS----SHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTCTT-----SCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcccCc----CHHHHHHHHHHHHHHHhhC--------HHHHHHHHHHHHhCCC-----CChHHHHHHHHH
Confidence 455677777776 554 5566677888888865532 1256778888886542 135677777777
Q ss_pred HHhcCCCCh-hH-----H--h-hccC---CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHH
Q 018602 205 LTLLFPLAG-EA-----L--T-YLGS---ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLY 272 (353)
Q Consensus 205 L~~L~~~~~-e~-----k--~-~l~~---~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV 272 (353)
|.+...... .. + . .+.. ...-+.++..|.+.+...|..++.+|-.+... + .- -+.-+++++.|+
T Consensus 65 lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~-~-~p--~~~w~~ll~~L~ 140 (861)
T 2bpt_A 65 LKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADI-E-LP--HGAWPELMKIMV 140 (861)
T ss_dssp HHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-H-GG--GTCCHHHHHHHH
T ss_pred HHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHh-h-Cc--ccccHHHHHHHH
Confidence 777532110 00 0 0 1221 12346777888888888899999998888633 1 11 013357899999
Q ss_pred HhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 273 TLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 273 ~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
+.+.++.++..+..|+.+|..+|..
T Consensus 141 ~~l~~~~~~~~r~~al~~l~~l~~~ 165 (861)
T 2bpt_A 141 DNTGAEQPENVKRASLLALGYMCES 165 (861)
T ss_dssp HHTSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 9997654778899999999999863
No 84
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=89.55 E-value=5.3 Score=37.72 Aligned_cols=73 Identities=4% Similarity=0.008 Sum_probs=54.8
Q ss_pred CCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCC-ChhHHHHHHHHHHHhhc
Q 018602 222 ASSMHCMVWFLKSG--DLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPI-CPTATEASFVVVYHMIT 296 (353)
Q Consensus 222 ~~~l~~Lv~~L~~g--s~~~R~~Aa~lL~~Lss~~-~~~~~~IG~~~gai~~LV~lL~~~~-s~~a~k~Al~aL~nLc~ 296 (353)
++.++.++..+.++ +...|..|+.+|..++... ...... ..+.+++.++..+++.. ++.....|+.++.++..
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 56899999999998 8999999999999997421 111111 12368888889998763 67788889999988754
No 85
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=87.92 E-value=3.6 Score=45.15 Aligned_cols=153 Identities=10% Similarity=0.009 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 018602 128 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 207 (353)
Q Consensus 128 ~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~ 207 (353)
.++..++.++.++ |...+..|...|....+.....=.--....+++.|+..|.+. +.+++..|+.+|..
T Consensus 6 ~~l~~lL~~l~s~----d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-------~~~vR~~A~~~L~~ 74 (1230)
T 1u6g_C 6 YHISNLLEKMTSS----DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-------NGEVQNLAVKCLGP 74 (1230)
T ss_dssp HHHHHHHHHTTCS----SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-------SHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCC----CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHH
Confidence 4677888888654 556667788888776654311000000113466677777532 56788888888877
Q ss_pred cCCC-ChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHH----HHhhhhhchHHHHHHhhcCCCChh
Q 018602 208 LFPL-AGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRV----NMFLEIEGAIESLYTLIKEPICPT 282 (353)
Q Consensus 208 L~~~-~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~----~~IG~~~gai~~LV~lL~~~~s~~ 282 (353)
+... .+... +..++.+...|...+...|..|+..|..++....... ..-...+.+++.|.+.+.+..++.
T Consensus 75 l~~~~~~~~~-----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~ 149 (1230)
T 1u6g_C 75 LVSKVKEYQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149 (1230)
T ss_dssp HHTTSCHHHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHH
T ss_pred HHHhCCHHHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchH
Confidence 6432 12111 2356777777888888889999988888763322110 000013478999999997534788
Q ss_pred HHHHHHHHHHHhhc
Q 018602 283 ATEASFVVVYHMIT 296 (353)
Q Consensus 283 a~k~Al~aL~nLc~ 296 (353)
.+..|+.+|..+|.
T Consensus 150 ~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 150 VQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999874
No 86
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=87.41 E-value=0.15 Score=37.77 Aligned_cols=54 Identities=9% Similarity=-0.127 Sum_probs=42.2
Q ss_pred hhhhhhHHhhhccccch-hHHH-HHhHHHHhhc------CCccccccccccCCceecCchhh
Q 018602 49 RLINLAKWLVESAWVAL-RLFQ-ERCEEELLWA------AEMIKIKAQDLKGKEVKVNTSLL 102 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~g------~~tcP~T~q~l~~~~l~pN~~L~ 102 (353)
+.|||-.+.+.+|++.. +..+ ..+...|+.. ..+||.-++++...+++||+.|+
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred CCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence 44999999999998765 5533 4445555544 88999999999988999999887
No 87
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=87.18 E-value=0.078 Score=42.74 Aligned_cols=60 Identities=5% Similarity=-0.105 Sum_probs=45.3
Q ss_pred hhhhhhHHhhhccccch-hHHH-HHhHHHHhhc-CCccccccccccCCceecCchhh--hhhhhh
Q 018602 49 RLINLAKWLVESAWVAL-RLFQ-ERCEEELLWA-AEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~g-~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
+.|||-.+.+.+|++.. +.++ ..+..+|+.. +.+||.-++++....+.||..++ |.++..
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v 83 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred CCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHcccee
Confidence 34999999999998765 5543 3345556554 44999999999988899999887 666654
No 88
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=86.12 E-value=0.082 Score=38.97 Aligned_cols=54 Identities=7% Similarity=-0.096 Sum_probs=42.0
Q ss_pred hhhhhhHHhhhccccch-hHHH-HHhHHHHhhc-------CCccccccccccCCceecCchhh
Q 018602 49 RLINLAKWLVESAWVAL-RLFQ-ERCEEELLWA-------AEMIKIKAQDLKGKEVKVNTSLL 102 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~g-------~~tcP~T~q~l~~~~l~pN~~L~ 102 (353)
+.|||-.+.+.+|++.+ +..+ ..+..+|+.. ..+||.-++++...+++||+.|+
T Consensus 13 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLA 75 (79)
T ss_dssp CEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSC
T ss_pred CCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHH
Confidence 34999999999998765 6644 3344445543 78999999999989999999887
No 89
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=85.76 E-value=18 Score=37.37 Aligned_cols=172 Identities=11% Similarity=0.048 Sum_probs=94.8
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCCh----hH-----
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAG----EA----- 215 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~----e~----- 215 (353)
+...+..+++-+..+++..+..=.-.....+++.+...+... +..++..|+..+..+..... +.
T Consensus 230 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 302 (876)
T 1qgr_A 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-------IDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHhHhhhhccccc
Confidence 434444566666666665443111111124566665554322 34567777776665521100 00
Q ss_pred ------H---hhcc--CCCcHHHHHHHHhc-------CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC
Q 018602 216 ------L---TYLG--SASSMHCMVWFLKS-------GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE 277 (353)
Q Consensus 216 ------k---~~l~--~~~~l~~Lv~~L~~-------gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~ 277 (353)
+ ..+. -...++.++..|.. .+...|..|+.+|..++.... ...+ +.+++.+...+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~---~~~l~~l~~~l~~ 377 (876)
T 1qgr_A 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV---PHVLPFIKEHIKN 377 (876)
T ss_dssp HSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH---HHHHHHHHHHTTC
T ss_pred cCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH---HHHHHHHHHHccC
Confidence 0 0000 02345666676753 356788899999988863322 1122 3567777777877
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCCch-HHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 278 PICPTATEASFVVVYHMITSASAADKP-IQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 278 ~~s~~a~k~Al~aL~nLc~~~~~~~~N-r~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
. +++.+..|+.+|-+++... +.. ....+ .++++.|+..|.|....+.+.++
T Consensus 378 ~-~~~~r~~a~~~l~~i~~~~---~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 378 P-DWRYRDAAVMAFGCILEGP---EPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp S-SHHHHHHHHHHHHHTSSSS---CHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHHHcCC---CHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHH
Confidence 6 8899999999999998653 112 22222 34788888888765433333333
No 90
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.38 E-value=0.14 Score=38.09 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=42.2
Q ss_pred hhhhhhhHHhhhccccch-hHHH-HHhHHHHhhcCCccccccccccCCceecCchhh
Q 018602 48 VRLINLAKWLVESAWVAL-RLFQ-ERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLL 102 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~ 102 (353)
.+.|||-.+.+.+|++.. +.++ ..+..+|+....+||.-++++. ..+.||..+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l~ 70 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKELM 70 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHHH
T ss_pred CCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHHH
Confidence 445999999999998765 6543 4467777888999999998886 6788886665
No 91
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=84.75 E-value=19 Score=34.69 Aligned_cols=165 Identities=11% Similarity=0.073 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhChh--hhhHHHhcCCHHHHHHHhhccccccc----chhHHHHHHHHHHHHhcCCCChhHHhhccCCCc
Q 018602 151 DLVAKIKKWIKESER--NKRCIVDYGAVSVLAAAFESFSKTCL----DEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 224 (353)
Q Consensus 151 ~Al~~Lr~Lakes~~--nR~~i~~aG~i~~Lv~~L~s~~~~~~----~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~ 224 (353)
+.++.|+.-.+..+. -+.+ + ++.+..|+.+|........ ..+...+.+.+..|..+.+.......++..+..
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F-~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~ 163 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEG 163 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHhhCccHHHHHH-H-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHH
Confidence 456666665555432 2333 3 4557888888854210000 113456777888887775543344557778999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccch-H--HHHH---------hhhhhchHHHHHHhhcCCCChhHHHHHHHHHH
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDH-R--RVNM---------FLEIEGAIESLYTLIKEPICPTATEASFVVVY 292 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~-~--~~~~---------IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~ 292 (353)
+..++..|.+..+.+|..|.-+|-.++-..+ + +... .|.. .-+..+|..++++.+....- +...|.
T Consensus 164 i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~-~RF~~lv~~L~~~~~~e~~~-~~m~lI 241 (383)
T 3eg5_B 164 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDGLKSGTSIALKV-GCLQLI 241 (383)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHHHTTSTTSCHHHHH-HHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCC-CcHHHHHHHHHccCcHHHHH-HHHHHH
Confidence 9999999999999999999999987774432 1 2222 2232 45778898888753444444 555555
Q ss_pred Hh-hcCCCC---CCchHHHHHHcCcHHHHHH
Q 018602 293 HM-ITSASA---ADKPIQKFVDMGLVSLLLE 319 (353)
Q Consensus 293 nL-c~~~~~---~~~Nr~~~VeaGaV~~Lle 319 (353)
|. +...++ |-.-|..+.+.|..+.+-+
T Consensus 242 N~li~~~~dl~~R~~lR~ef~~~Gl~~il~~ 272 (383)
T 3eg5_B 242 NALITPAEELDFRVHIRSELMRLGLHQVLQE 272 (383)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCChHHHHHH
Confidence 54 443211 1115667778898887765
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=84.51 E-value=5.9 Score=36.41 Aligned_cols=162 Identities=16% Similarity=0.156 Sum_probs=103.0
Q ss_pred CCChhhHHHHHHHHHHHHHhC--hhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC---CCChhHHh
Q 018602 143 SEDQTGGRDLVAKIKKWIKES--ERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF---PLAGEALT 217 (353)
Q Consensus 143 ~~d~~~~~~Al~~Lr~Lakes--~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~---~~~~e~k~ 217 (353)
..|...+..++--|..+.|+. ..+++.+.+ +.+.++.++.+. |..+.-.|+.+|-.|. +++++.-.
T Consensus 44 dkD~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~-------dEkval~A~r~L~~LLe~vpL~~~~y~ 114 (265)
T 3b2a_A 44 EDDETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQE-------NEKVTIKALRALGYLVKDVPMGSKTFL 114 (265)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCST-------THHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhcc-------chhHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 356677778888888888883 333333332 466677777544 4456666666665442 22222222
Q ss_pred hccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 218 YLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 218 ~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
. .+..+..++++|+.--+.+|+-.+-.|. ... ..++.+..+..++ .+.+++.+-+|+.+|.|++..
T Consensus 115 K-----l~~aL~dlik~~~~il~~eaae~Lgklk-v~~-------~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 115 K-----AAKTLVSLLESPDDMMRIETIDVLSKLQ-PLE-------DSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp H-----HHHHHHHHTTSCCHHHHHHHHHHHHHCC-BSC-------CCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred H-----HHHHHHHHhcCCCchHHHHHHHHhCcCC-ccc-------chHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence 2 4677888889999989999999999883 311 1246677777888 445899999999999999775
Q ss_pred CCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 298 ASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 298 ~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
.. +++. -.+++..+-++|...+.-..|+||
T Consensus 181 S~--D~~i----~~~I~~eI~elL~~eD~~l~e~aL 210 (265)
T 3b2a_A 181 SA--DSGH----LTLILDEIPSLLQNDNEFIVELAL 210 (265)
T ss_dssp CS--SCCC----GGGTTTTHHHHHTCSCHHHHHHHH
T ss_pred cC--CHHH----HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 30 1121 123455556666544556666666
No 93
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=84.48 E-value=22 Score=31.66 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhChh--hhhHHHhcCCHHHHHHHhhccccccc----chhHHHHHHHHHHHHhcCCCChhHHhhccCCCc
Q 018602 151 DLVAKIKKWIKESER--NKRCIVDYGAVSVLAAAFESFSKTCL----DEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 224 (353)
Q Consensus 151 ~Al~~Lr~Lakes~~--nR~~i~~aG~i~~Lv~~L~s~~~~~~----~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~ 224 (353)
+-+++|+...+..+. -+.+ ..|++..|+..|........ +.+...+.+.+..|..+.+.......++..++.
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F--~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~ 97 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF--GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEG 97 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH--HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSH
T ss_pred HHHHHHhHhHhcCCcHHHHHH--HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHH
Confidence 345555555554432 2223 24667778888754311000 013456778888888775543344556778899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccch--H-HHHHh---------hhhhchHHHHHHhhcCCCChhHHHHHHHHHH
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDH--R-RVNMF---------LEIEGAIESLYTLIKEPICPTATEASFVVVY 292 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~--~-~~~~I---------G~~~gai~~LV~lL~~~~s~~a~k~Al~aL~ 292 (353)
+..++..|.+..+.+|..|+-+|..++...+ . +...+ +.. .-+..+|+.++++.+.. -+.|...+.
T Consensus 98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~-~RF~~lv~~l~~~~~~e-~~~~~m~lI 175 (233)
T 2f31_A 98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDGLKSGTSIA-LKVGCLQLI 175 (233)
T ss_dssp HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTS-CTTHHHHHTTSTTSCHH-HHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCc-chHHHHHHHHhcCChHH-HHHHHHHHH
Confidence 9999999999999999999988887774432 1 22221 222 35666888887553434 444555555
Q ss_pred Hh-hcCCCC---CCchHHHHHHcCcHHHHHHHh
Q 018602 293 HM-ITSASA---ADKPIQKFVDMGLVSLLLETL 321 (353)
Q Consensus 293 nL-c~~~~~---~~~Nr~~~VeaGaV~~LlelL 321 (353)
|. +...++ |-.-|..+..+|.-+.+-++=
T Consensus 176 N~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~ 208 (233)
T 2f31_A 176 NALITPAEELDFRVHIRSELMRLGLHQVLQELR 208 (233)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHh
Confidence 55 433311 112567788889887775543
No 94
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=84.12 E-value=29 Score=35.43 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=68.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhh--cCCCChhHHHHHHHHHHHhhcCCCCC
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLI--KEPICPTATEASFVVVYHMITSASAA 301 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL--~~~~s~~a~k~Al~aL~nLc~~~~~~ 301 (353)
++..+.+=|++.+...|..|...|-++. . ++ ++ +.+++.+.+.+ .+. +|--+|.|+.++++++...
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~-~-~e---~~---~~l~~~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~--- 179 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVG-S-RE---MA---EAFAGEIPKILVAGDT-MDSVKQSAALCLLRLYRTS--- 179 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHC-C-HH---HH---HHHTTHHHHHHHCSSS-CHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccC-C-HH---HH---HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhC---
Confidence 4666777788889999999999998885 2 33 22 25677788888 666 8999999999999998643
Q ss_pred CchHHHHHH-cCcHHHHHHHhhhccccchhhhh
Q 018602 302 DKPIQKFVD-MGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 302 ~~Nr~~~Ve-aGaV~~LlelL~~~~~~~~E~aL 333 (353)
+. .++ .+.++.|.++|.|.+.++..-|+
T Consensus 180 -p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~ 208 (621)
T 2vgl_A 180 -PD---LVPMGDWTSRVVHLLNDQHLGVVTAAT 208 (621)
T ss_dssp -GG---GCCCCSCHHHHHHHTTCSCHHHHHHHH
T ss_pred -hh---hcCchhHHHHHHHHhCCCCccHHHHHH
Confidence 22 222 47888888888776666665555
No 95
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.03 E-value=0.11 Score=41.75 Aligned_cols=58 Identities=9% Similarity=-0.074 Sum_probs=44.7
Q ss_pred hhhhhhHHhhhccccc-h-hHHHHH-hHHHHhhcCCccccccccccCCceecCchhh--hhhhhh
Q 018602 49 RLINLAKWLVESAWVA-L-RLFQER-CEEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~-~-~~~~eR-~~~e~~~g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~~ 108 (353)
+.|||-.+++.+|++. . +.++=+ +...|+. .+||.-++++...+++||+.|+ +..|..
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHHHH
Confidence 4499999999999876 5 765533 3444444 8899999999888999999999 666554
No 96
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.51 E-value=0.22 Score=36.87 Aligned_cols=54 Identities=6% Similarity=-0.060 Sum_probs=40.8
Q ss_pred hhhhhhHHhhhccccch-hHHH-HHhHHHHhh------cCCccccccccccCCceecCchhh
Q 018602 49 RLINLAKWLVESAWVAL-RLFQ-ERCEEELLW------AAEMIKIKAQDLKGKEVKVNTSLL 102 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~------g~~tcP~T~q~l~~~~l~pN~~L~ 102 (353)
+.|||-.+.+.+|++.. +..+ ..+..+|+. +..+||.-++.+...+++||+.|+
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred CCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 34999999999998654 5433 333444443 488999999999999999999987
No 97
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=82.73 E-value=18 Score=37.24 Aligned_cols=115 Identities=11% Similarity=0.133 Sum_probs=72.5
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 018602 174 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISS 253 (353)
Q Consensus 174 G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~ 253 (353)
.++|.|+..+.....++.+.+..++..|..+|..++. .....+ -+..++.+...|.+.+...|..|+..+-.++..
T Consensus 324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~---~~~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQ---NCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHH---HHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHH---HccHhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcC
Confidence 4667777777543211001223566677777765531 111111 124567777778888999999999999998743
Q ss_pred c--hHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 254 D--HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 254 ~--~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
. +.....+ +.+++.|++.+++. ++..+..++.+|-+++.
T Consensus 400 ~~~~~~~~~l---~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 400 PDKVQRTYYV---HQALPSILNLMNDQ-SLQVKETTAWCIGRIAD 440 (861)
T ss_dssp SCHHHHHHHH---HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHH
Confidence 2 1222222 46888999999877 88888888888887764
No 98
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=82.36 E-value=7.2 Score=40.34 Aligned_cols=131 Identities=5% Similarity=0.014 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCCh-h-HHhhccCCCcH
Q 018602 148 GGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAG-E-ALTYLGSASSM 225 (353)
Q Consensus 148 ~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~-e-~k~~l~~~~~l 225 (353)
.+..|+.-+..++...+. ..+ ..+++.+...+.+ .+..+++.|+.+|..+..... + ....+ +..+
T Consensus 344 ~r~~a~~~l~~l~~~~~~--~~~--~~~l~~l~~~l~~-------~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l 410 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCED--DIV--PHVLPFIKEHIKN-------PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAM 410 (876)
T ss_dssp HHHHHHHHHHHHHHHHGG--GGH--HHHHHHHHHHTTC-------SSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHCcH--hhH--HHHHHHHHHHccC-------CChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHH
Confidence 344566666666654331 111 1233444444432 256789999999988753221 2 11122 3478
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchHH---HHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 226 HCMVWFLKSGDLSRRRNTVLVLREVISSDHRR---VNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 226 ~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~---~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
+.++..|+..+...|..|+.+|-.++...... ... .+.+++.|+..+++. +.....|..+|.+++.
T Consensus 411 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~---l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 411 PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY---LAPLLQCLIEGLSAE--PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT---HHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH---HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence 89999999889999999999999987442221 122 246788889888763 7778888899988875
No 99
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=82.11 E-value=0.3 Score=41.53 Aligned_cols=61 Identities=5% Similarity=-0.040 Sum_probs=45.4
Q ss_pred hhhhhhhHHhhhccccc-h-hHH-HHHhHHHHhh-cCCcccccccccc-CCceecCchhh--hhhhhh
Q 018602 48 VRLINLAKWLVESAWVA-L-RLF-QERCEEELLW-AAEMIKIKAQDLK-GKEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~-~-~~~-~eR~~~e~~~-g~~tcP~T~q~l~-~~~l~pN~~L~--i~~w~~ 108 (353)
.+.|||-.+.+.+|++. . +.+ =..+...|+. ++.+||.-++++. ...++||..|. |..|..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 44599999999999854 4 553 3445555555 4899999999985 45699999999 777764
No 100
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.79 E-value=0.34 Score=38.02 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=44.9
Q ss_pred hhhhhhhHHhhhccccch-hHHH-HHhHHHHhhcC---CccccccccccCCceecCchhh--hhhhh
Q 018602 48 VRLINLAKWLVESAWVAL-RLFQ-ERCEEELLWAA---EMIKIKAQDLKGKEVKVNTSLL--YQQTK 107 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~g~---~tcP~T~q~l~~~~l~pN~~L~--i~~w~ 107 (353)
.+.|||-.+.+.+|++.. +..+ ..+...|+... .+||.-++++....+.+|..+. ++.+.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 345999999999998765 6543 33455566533 5999999999999999999988 55554
No 101
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=81.66 E-value=26 Score=32.80 Aligned_cols=109 Identities=11% Similarity=-0.018 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCCChhHHhhccC--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHh
Q 018602 197 VLEEILSTLTLLFPLAGEALTYLGS--ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTL 274 (353)
Q Consensus 197 v~E~AL~~L~~L~~~~~e~k~~l~~--~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~l 274 (353)
.+=-++++++|++. +...+..+.+ ...++.+...+...+-..|..++.++++++...-... .......++..+..+
T Consensus 164 n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~-~~~~~~~ll~~l~~i 241 (304)
T 3ebb_A 164 NQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDH-NIEGKAQCLSLISTI 241 (304)
T ss_dssp HHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHH
Confidence 45678889999864 4455665442 3366666666655577899999999999984311100 111122355566677
Q ss_pred hcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHc
Q 018602 275 IKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM 311 (353)
Q Consensus 275 L~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~Vea 311 (353)
+++..++.+.--++.+|-+|.... .....+++.
T Consensus 242 l~~~~d~EalyR~LvALGtL~~~~----~~~~~lak~ 274 (304)
T 3ebb_A 242 LEVVQDLEATFRLLVALGTLISDD----SNAVQLAKS 274 (304)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTTC----HHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHhCC----hhHHHHHHH
Confidence 766668888888999999998654 455555544
No 102
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=80.26 E-value=0.43 Score=34.15 Aligned_cols=50 Identities=10% Similarity=-0.051 Sum_probs=39.2
Q ss_pred hhhhhHHhhhcc-------ccch-hH-HHHHhHHHHhhcCCccccccccccCCceecCc
Q 018602 50 LINLAKWLVESA-------WVAL-RL-FQERCEEELLWAAEMIKIKAQDLKGKEVKVNT 99 (353)
Q Consensus 50 ~c~l~~~~m~d~-------~~~~-~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~ 99 (353)
.|||=.+.+.+| ++.. +. |=..+...|+..+.+||.-++++...+++|++
T Consensus 12 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp BCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 399998888887 5544 44 44556777888889999999999988888875
No 103
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=79.30 E-value=0.33 Score=41.42 Aligned_cols=59 Identities=7% Similarity=-0.097 Sum_probs=43.6
Q ss_pred hhhhhhHHhhhccccch-hHHHHH-hHHHHhh-cCCccccccccccCCceecCchhh--hhhhh
Q 018602 49 RLINLAKWLVESAWVAL-RLFQER-CEEELLW-AAEMIKIKAQDLKGKEVKVNTSLL--YQQTK 107 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~-~~~~eR-~~~e~~~-g~~tcP~T~q~l~~~~l~pN~~L~--i~~w~ 107 (353)
+.|||-.+++.+|++.+ +.++=+ +...|+. +..+||.-++++....+.||..++ |.++.
T Consensus 19 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 34999999999998765 654433 4444543 456999999999888899998887 65544
No 104
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=76.31 E-value=0.6 Score=36.31 Aligned_cols=58 Identities=10% Similarity=-0.126 Sum_probs=45.0
Q ss_pred hhhhhhHHhhhcccc-ch-hH-HHHHhHHHHhhcC-CccccccccccCCceecCchhh-hhhh
Q 018602 49 RLINLAKWLVESAWV-AL-RL-FQERCEEELLWAA-EMIKIKAQDLKGKEVKVNTSLL-YQQT 106 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~-~~-~~-~~eR~~~e~~~g~-~tcP~T~q~l~~~~l~pN~~L~-i~~w 106 (353)
+.|||=.+.+.+|++ .. +. |=..+..+|+... .+||.-++++....+++|..+. +.+-
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQ 85 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHH
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHH
Confidence 449999999999987 65 55 4445666677665 7999999999888999998887 4443
No 105
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.92 E-value=0.84 Score=32.98 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=40.6
Q ss_pred hhhhhhhHHhhhccccc-h-hH-HHHHhHHHHhhcCCccccccccccCCceecCc
Q 018602 48 VRLINLAKWLVESAWVA-L-RL-FQERCEEELLWAAEMIKIKAQDLKGKEVKVNT 99 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~-~-~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~ 99 (353)
.+.|||-.+.+.||++. . +. |=..+..+|+..+.+||.-++++...++.+|.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 34599999999999864 4 55 44456777778889999999999888887775
No 106
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=75.16 E-value=13 Score=31.61 Aligned_cols=72 Identities=7% Similarity=-0.009 Sum_probs=55.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~-~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
++..|.+=|++++......|..+|..+..- .......|++. +++..|++++....++..++..+..+..-..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~-~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSR-DFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 566667778888999999999999998733 34455577664 9999999999865678888888887777643
No 107
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=73.95 E-value=31 Score=32.99 Aligned_cols=91 Identities=8% Similarity=0.012 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 018602 194 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 273 (353)
Q Consensus 194 ~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~ 273 (353)
|+-++-.||++|..+.. ++-- ....+.+-..|.+.++..|..|+.....|....++ .+ .+++..+-+
T Consensus 117 N~~iR~lALRtL~~I~~--~~m~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v---~~~~~~l~~ 183 (355)
T 3tjz_B 117 EDSYRGPAVRALCQITD--STML-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV---KRWVNEAQE 183 (355)
T ss_dssp CHHHHHHHHHHHHHHCC--TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH---HTTHHHHHH
T ss_pred cHhHHHHHHHHHhcCCC--HHHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH---HHHHHHHHH
Confidence 56788899999998742 1211 12345556666677999999999999998755444 44 378999999
Q ss_pred hhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 274 LIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 274 lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
++.+. +|...-.|+.+|+.++...
T Consensus 184 ll~d~-n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 184 AASSD-NIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HTTCS-SHHHHHHHHHHHHHHHTTC
T ss_pred HhcCC-CccHHHHHHHHHHHHHhhc
Confidence 99887 7888889999999998753
No 108
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=73.48 E-value=66 Score=30.86 Aligned_cols=166 Identities=11% Similarity=0.081 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhChh--hhhHHHhcCCHHHHHHHhhccccccc----chhHHHHHHHHHHHHhcCCCChhHHhhccCCCc
Q 018602 151 DLVAKIKKWIKESER--NKRCIVDYGAVSVLAAAFESFSKTCL----DEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 224 (353)
Q Consensus 151 ~Al~~Lr~Lakes~~--nR~~i~~aG~i~~Lv~~L~s~~~~~~----~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~ 224 (353)
+.++.|+...+.++. -+.+ . .|++..|+.+|........ ..+...+.+++..|..+.+.......++..+..
T Consensus 24 ~~L~~L~v~Lrt~~~~Wv~~F-~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~ 101 (386)
T 2bnx_A 24 SCLESLRVSLNNNPVSWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEG 101 (386)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSH
T ss_pred HHHHHHhHHHhcCCcHHHHHH-H-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHH
Confidence 355666665555432 2233 2 4567777777754311000 113456778888887776543344456778899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccch--H-HHHHh---------hhhhchHHHHHHhhcCCCChhHHHHHHHHHH
Q 018602 225 MHCMVWFLKSGDLSRRRNTVLVLREVISSDH--R-RVNMF---------LEIEGAIESLYTLIKEPICPTATEASFVVVY 292 (353)
Q Consensus 225 l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~--~-~~~~I---------G~~~gai~~LV~lL~~~~s~~a~k~Al~aL~ 292 (353)
+..++..|.+..+.+|..+.-+|..++...+ . +...+ +.. .-+..||+.++++.+.. -+.|...+.
T Consensus 102 i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~-~RF~~lv~~l~~~~~~e-~~~a~m~lI 179 (386)
T 2bnx_A 102 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDGLKSGTSIA-LKVGCLQLI 179 (386)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHHHHTSTTSCHH-HHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCch-hhHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 9999999988899999999888877775432 1 22222 222 35566888887653444 444555555
Q ss_pred Hh-hcCCCC---CCchHHHHHHcCcHHHHHHH
Q 018602 293 HM-ITSASA---ADKPIQKFVDMGLVSLLLET 320 (353)
Q Consensus 293 nL-c~~~~~---~~~Nr~~~VeaGaV~~Llel 320 (353)
|. +...++ |-.-|..+..+|.-+.+-++
T Consensus 180 N~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~L 211 (386)
T 2bnx_A 180 NALITPAEELDFRVHIRSELMRLGLHQVLQEL 211 (386)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 55 433311 11157788889988876544
No 109
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=73.37 E-value=13 Score=38.04 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHH--hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHH
Q 018602 194 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFL--KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESL 271 (353)
Q Consensus 194 ~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L--~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~L 271 (353)
|+.++-.||.+|..+.. .+- .+..++.+.+.| .+.++..|..|+..+..+....++ .+ ..+++++.|
T Consensus 124 n~~ir~lALr~L~~i~~--~e~-----~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~-~~~~~~~~l 192 (621)
T 2vgl_A 124 NPTFMGLALHCIANVGS--REM-----AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LV-PMGDWTSRV 192 (621)
T ss_dssp CHHHHHHHHHHHHHHCC--HHH-----HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GC-CCCSCHHHH
T ss_pred CHHHHHHHHHHhhccCC--HHH-----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hc-CchhHHHHH
Confidence 56778889999998742 221 124577888888 777999999999999999755443 33 223899999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 272 YTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 272 V~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
.++|.+. +|....+|+.+|+.+|..
T Consensus 193 ~~lL~d~-d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 193 VHLLNDQ-HLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHTTCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-CccHHHHHHHHHHHHHHh
Confidence 9999876 889999999999999874
No 110
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=72.80 E-value=0.38 Score=38.26 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=44.5
Q ss_pred hhhhhhhhHHhhhccccch-hHHH-HHhHHHHhh-cCCccccccccccC-------CceecCchhh--hhhhhh
Q 018602 47 HVRLINLAKWLVESAWVAL-RLFQ-ERCEEELLW-AAEMIKIKAQDLKG-------KEVKVNTSLL--YQQTKF 108 (353)
Q Consensus 47 ~~~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~-g~~tcP~T~q~l~~-------~~l~pN~~L~--i~~w~~ 108 (353)
..+.|||-.+.+.+|++.+ +.++ ..+...|+. ++.+||.-++.+.. ..+.+|..|. |+.|.-
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 3455999999999998766 6644 334444554 47899999888864 5677788888 777753
No 111
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=72.39 E-value=43 Score=36.47 Aligned_cols=158 Identities=11% Similarity=0.084 Sum_probs=93.1
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhH--Hhhc--
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEA--LTYL-- 219 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~-~~~e~--k~~l-- 219 (353)
+...+..|+..|..+++..+. ..+ ..+++.|...|.+. +..++..|..+|..+.. ...+. ....
T Consensus 61 ~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~-------~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~ 129 (1230)
T 1u6g_C 61 NGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSD-------KEQLRDISSIGLKTVIGELPPASSGSALAAN 129 (1230)
T ss_dssp SHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCS-------SSHHHHHHHHHHHHHHHHCC-----CCTHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHhCCCcccccchHHH
Confidence 455666788888888865433 111 12455565555432 23456666555554421 11110 0000
Q ss_pred cCCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 220 GSASSMHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 220 ~~~~~l~~Lv~~L~-~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
.-+..++.+...+. +.+...|..|..+|.++....... ..-..+.+++.|+..+.++ ++..++.|+.+|-.++...
T Consensus 130 ~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~--l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL--LVNFHPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS--CTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH--HHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhc
Confidence 02357889999998 578899999999999987321110 1111246788888888876 7788999999999998754
Q ss_pred CCCCchHHHHHHcCcHHHHHHHhhh
Q 018602 299 SAADKPIQKFVDMGLVSLLLETLVD 323 (353)
Q Consensus 299 ~~~~~Nr~~~VeaGaV~~LlelL~~ 323 (353)
.+. + -...++.+++.|.+
T Consensus 207 ----~~~--~-~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 207 ----GNI--V-FVDLIEHLLSELSK 224 (1230)
T ss_dssp -----------CTTHHHHHHHHHHH
T ss_pred ----CHH--H-HHHHHHHHHHHhcc
Confidence 221 1 12356667776653
No 112
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=71.32 E-value=17 Score=39.67 Aligned_cols=131 Identities=8% Similarity=0.081 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhChhhhh---HHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhHHhhccCCCcH
Q 018602 150 RDLVAKIKKWIKESERNKR---CIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEALTYLGSASSM 225 (353)
Q Consensus 150 ~~Al~~Lr~Lakes~~nR~---~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~-~~~e~k~~l~~~~~l 225 (353)
..|+..+..+++....... ++. +..|.++..+.. +...|++.|-.++..+.. ...+.. ...+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~d-------k~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~ 135 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGN-------KDKEIQSVASETLISIVNAVNPVAI-----KALL 135 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTC-------SSHHHHHHHHHHHHHHHHHSCGGGH-----HHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHhCCHHHH-----HHHH
Confidence 4577777777765542111 111 334444444322 234566655544433321 122222 3468
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhh-hhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 226 HCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFL-EIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 226 ~~Lv~~L~~g-s~~~R~~Aa~lL~~Lss~~~~~~~~IG-~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
|.++..|+++ .+.+|..|..++..|+...+ ..+| .-+++||.+-..+.+- -+..+++|..++..+|..-
T Consensus 136 ~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 136 PHLTNAIVETNKWQEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETV 206 (986)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcC
Confidence 9999999876 79999999999999984432 3343 3356777777777665 6789999999999999754
No 113
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=71.28 E-value=44 Score=29.78 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhh---HHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC-C-hh--HH
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKR---CIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL-A-GE--AL 216 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~---~i~~a-G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~-~-~e--~k 216 (353)
+...+.+|+.++..+......... .+... ...+.+...+. |.|..+++.++.+|..+... . .. .+
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-------DsN~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-------DSNVVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-------CSSHHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-------cchHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 446778899999888765432110 11112 24455555553 24788899998888665321 1 11 11
Q ss_pred h-hccCCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 018602 217 T-YLGSASSMHCMVW-FLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM 294 (353)
Q Consensus 217 ~-~l~~~~~l~~Lv~-~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nL 294 (353)
. ...-..+++.|+. .|.++....|..|...+..+.... +....+++.++..+... +|+.+..++..|..+
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-------~~~~~~~e~l~~~l~~K-npkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-------TSITQSVELVIPFFEKK-LPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-------SSSHHHHHHHGGGGGCS-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Confidence 1 1112335666664 466677788888888887765221 11123455666666655 888888888888877
Q ss_pred hcCCCCCCchHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 295 ITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 295 c~~~~~~~~Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
....+...-|....+. .+++.+..+|.+.+..+-+.|.
T Consensus 167 l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~ 204 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTM 204 (278)
T ss_dssp HHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHH
T ss_pred HHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHH
Confidence 4311000112222222 2444555566555444444333
No 114
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=70.08 E-value=0.89 Score=37.44 Aligned_cols=44 Identities=16% Similarity=-0.011 Sum_probs=35.3
Q ss_pred hhhhhHHhhhccccch-hHHH-HHhHHHHhhcCCccccccccccCC
Q 018602 50 LINLAKWLVESAWVAL-RLFQ-ERCEEELLWAAEMIKIKAQDLKGK 93 (353)
Q Consensus 50 ~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~g~~tcP~T~q~l~~~ 93 (353)
-|||-.+.+.||++.+ +.+| ..+..+|+..+.+||.-++++.+.
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4999999999998765 6644 445777888999999999888654
No 115
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.56 E-value=1.3 Score=31.31 Aligned_cols=46 Identities=11% Similarity=-0.009 Sum_probs=33.9
Q ss_pred hhhhhhHHhhhccccch-hHHH-HHhHHHHh-hcCCccccccccccCCc
Q 018602 49 RLINLAKWLVESAWVAL-RLFQ-ERCEEELL-WAAEMIKIKAQDLKGKE 94 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~-~g~~tcP~T~q~l~~~~ 94 (353)
+.|||-.+.+.+|++.. +..+ ..+..+|+ .++.+||.-++++...+
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 34999999999998755 5543 34455666 57889999988887554
No 116
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=67.54 E-value=39 Score=31.01 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=73.4
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 018602 175 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 254 (353)
Q Consensus 175 ~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~ 254 (353)
++|.|+.=+..+ ...+++.+-.+|..+. .+.......+.+..-+++.+...|+.....+.++-..
T Consensus 133 ~lP~LveKlGd~-------k~~vR~~~r~il~~l~-------~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~- 197 (266)
T 2of3_A 133 FVPYLLLKTGEA-------KDNMRTSVRDIVNVLS-------DVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITN- 197 (266)
T ss_dssp HHHHHHHGGGCS-------SHHHHHHHHHHHHHHH-------HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCC-------hHHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh-
Confidence 567776655332 3457777766665541 1111223677777888888999999999888887422
Q ss_pred hHHHHHhhhhhchH---HHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHH
Q 018602 255 HRRVNMFLEIEGAI---ESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFV 309 (353)
Q Consensus 255 ~~~~~~IG~~~gai---~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~V 309 (353)
..+. ...++ +.+..++.+. ++....+|+.++..+..+- |+...+.+
T Consensus 198 ----~G~~-~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~---Gd~v~k~l 246 (266)
T 2of3_A 198 ----AGIS-PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFE---GDQMWKAA 246 (266)
T ss_dssp ----HCSG-GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred ----cCCC-ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHh---hHHHHHHH
Confidence 1121 23578 9999999987 8888999999988775543 35555554
No 117
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=67.05 E-value=89 Score=29.75 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=69.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 303 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~ 303 (353)
+..++.+=+++++.-.|.+|...|..+. . ++ ++ +.+.+.+-+.|.+. +|--.+.|+.+.++|+...
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~-~-~~---m~---~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~----- 170 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQIT-D-ST---ML---QAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCS----- 170 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHC-C-TT---TH---HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCC-C-HH---HH---HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccC-----
Confidence 6778888899999999999999999995 2 33 22 24566677778777 8999999999999998753
Q ss_pred hHHHHHHcCcHHHHHHHhhhccccchhhhh
Q 018602 304 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 304 Nr~~~VeaGaV~~LlelL~~~~~~~~E~aL 333 (353)
..+|+ +.+..+.+++.+....+.-.|+
T Consensus 171 --pe~v~-~~~~~l~~ll~d~n~~V~~~Al 197 (355)
T 3tjz_B 171 --FDVVK-RWVNEAQEAASSDNIMVQYHAL 197 (355)
T ss_dssp --HHHHH-TTHHHHHHHTTCSSHHHHHHHH
T ss_pred --HHHHH-HHHHHHHHHhcCCCccHHHHHH
Confidence 23454 6888888888765444443344
No 118
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=65.51 E-value=1.4 Score=30.46 Aligned_cols=49 Identities=10% Similarity=-0.037 Sum_probs=36.2
Q ss_pred hhhhHHhhhcc-------ccch-hH-HHHHhHHHHhhcCCccccccccccCCceecCc
Q 018602 51 INLAKWLVESA-------WVAL-RL-FQERCEEELLWAAEMIKIKAQDLKGKEVKVNT 99 (353)
Q Consensus 51 c~l~~~~m~d~-------~~~~-~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~ 99 (353)
|||-.+.+.+| ++.. +. |=..+..+|+..+.+||.-++++...+++|++
T Consensus 6 C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 77777777776 4433 44 33445667777899999999999988888875
No 119
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=65.27 E-value=26 Score=29.92 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=55.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcC-----CCChhHHHHHHHHHHHhhc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKE-----PICPTATEASFVVVYHMIT 296 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~-~~~~~~~IG~~~gai~~LV~lL~~-----~~s~~a~k~Al~aL~nLc~ 296 (353)
++..|.+=|++++......|..+|..+..- .......|++. +++..|++++.. ..++..++.++..+..-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF-RFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 567777778899999999999999998743 23455577665 999999999963 2356778888888887753
No 120
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=65.22 E-value=22 Score=29.25 Aligned_cols=70 Identities=7% Similarity=0.037 Sum_probs=54.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~-~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
++..|.+-|++++......|..+|..+..- .......|++. .++..|+++++.. ++..++..+..+....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~-~Fl~el~~l~~~~-~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSR-DFASEVSNVLNKG-HPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSH-HHHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhH-HHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 677777888899999999999999988733 33445577665 8999999999654 7888888888887664
No 121
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=65.21 E-value=32 Score=28.72 Aligned_cols=72 Identities=8% Similarity=0.102 Sum_probs=55.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchHHHHHhhhhhchHHHHHHhhcCC-----CChhHHHHHHHHHHHhhc
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVIS-SDHRRVNMFLEIEGAIESLYTLIKEP-----ICPTATEASFVVVYHMIT 296 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss-~~~~~~~~IG~~~gai~~LV~lL~~~-----~s~~a~k~Al~aL~nLc~ 296 (353)
++..|.+=|++++......|..+|..+.. +.......|++. .++..|++++... .++..++..+..+..-..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF-RFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH-HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH-HHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 56777777888999999999999999873 334555677665 9999999999742 466777778888877753
No 122
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=65.18 E-value=1.3 Score=35.01 Aligned_cols=51 Identities=4% Similarity=-0.065 Sum_probs=37.8
Q ss_pred hhhhhhhHHhhhccccch-hHHH-HHhHHHHhhc-CCccccccccccCCceecC
Q 018602 48 VRLINLAKWLVESAWVAL-RLFQ-ERCEEELLWA-AEMIKIKAQDLKGKEVKVN 98 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~g-~~tcP~T~q~l~~~~l~pN 98 (353)
.+.|||-.+.+.||++.. +..+ ..+..+|+.. ..+||.-++++...++.++
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 455999999999998765 5543 3345556654 7899999999988776654
No 123
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=64.75 E-value=33 Score=28.51 Aligned_cols=73 Identities=5% Similarity=0.060 Sum_probs=56.2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchHHHHHhhhhhchHHHHHHhhcCC-----CChhHHHHHHHHHHHhhc
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVIS-SDHRRVNMFLEIEGAIESLYTLIKEP-----ICPTATEASFVVVYHMIT 296 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss-~~~~~~~~IG~~~gai~~LV~lL~~~-----~s~~a~k~Al~aL~nLc~ 296 (353)
.++..|.+=|++++......|..+|..+.. +.......|++. +++..|++++... .++..++..+..+..-..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF-RFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 367777888889999999999999999874 334555677665 9999999999741 366777778887777753
No 124
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=64.33 E-value=1.4e+02 Score=32.54 Aligned_cols=148 Identities=9% Similarity=0.093 Sum_probs=89.1
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChhhhhHHHhc--CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 131 LEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDY--GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 131 ~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~a--G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
..|+..+.+. +..+.+..|++-|..+++..+ ..++.. .+||++...+-.. .++|...|..+|..+
T Consensus 136 ~~~~~~~~~~---~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~-------k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 136 PHLTNAIVET---NKWQEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDT-------KKEVKAAATAAMTKA 202 (986)
T ss_dssp HHHHHHHHHC---CCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCS-------SHHHHHHHHHHHHHH
T ss_pred HHHHHHhccc---cchHHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccC-------cHHHHHHHHHHHHHH
Confidence 3455556432 234677889999999998763 455443 6778877776432 345666555555433
Q ss_pred C----CCChh-----HHhhccCCCc---------------------H----HHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 018602 209 F----PLAGE-----ALTYLGSASS---------------------M----HCMVWFLKSGDLSRRRNTVLVLREVISSD 254 (353)
Q Consensus 209 ~----~~~~e-----~k~~l~~~~~---------------------l----~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~ 254 (353)
+ +.|-+ .-+.|.+|.- | |.|.+-|+..+...+..++.++.+++...
T Consensus 203 ~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 203 TETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp GGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence 2 22211 1111223332 3 33334444457888899999999999765
Q ss_pred hH---HHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 018602 255 HR---RVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM 294 (353)
Q Consensus 255 ~~---~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nL 294 (353)
++ ....+ +..+|+|-+....-.+|.+.+.|-+++-.|
T Consensus 283 ~~~~~~~~f~---~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 283 EDPQVIAPFL---GKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp CCHHHHHHHH---TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHhhhh---hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 43 33344 567777777766556888777777776666
No 125
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.89 E-value=22 Score=31.71 Aligned_cols=73 Identities=8% Similarity=0.080 Sum_probs=57.2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 223 SSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 223 ~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~-~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
.++..|.+=|++++......|..+|..+..- .......|++. .++..|+++++...++..++..+..+.....
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK-QTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3677788888899999999999999998732 23455567664 9999999999766677888888888887753
No 126
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=59.67 E-value=1.4 Score=32.10 Aligned_cols=43 Identities=16% Similarity=-0.020 Sum_probs=30.1
Q ss_pred hhhhhhHHhhhccccch--hHHHH-HhHHHHhhc--CCcccccccccc
Q 018602 49 RLINLAKWLVESAWVAL--RLFQE-RCEEELLWA--AEMIKIKAQDLK 91 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~--~~~~e-R~~~e~~~g--~~tcP~T~q~l~ 91 (353)
+.|||-.+.|.||++.. +..|= .+..+|+.. ..+||.-++++.
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 44999999999998754 55443 345556643 379999887643
No 127
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.69 E-value=31 Score=30.35 Aligned_cols=71 Identities=8% Similarity=0.068 Sum_probs=54.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 018602 224 SMHCMVWFLKSGDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 295 (353)
Q Consensus 224 ~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~-~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc 295 (353)
++..|.+=|++++......|..+|..+..-. ......|++. .++..|++++.+..++..++.++..+..-.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK-ENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 5677777788899999999999999987433 3445677665 899999999976656777777777776664
No 128
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=52.84 E-value=72 Score=29.19 Aligned_cols=162 Identities=9% Similarity=0.083 Sum_probs=98.6
Q ss_pred ChhhHHHHHHHHHHHHHhChhhhhHHHhcC-CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhHHhhcc--
Q 018602 145 DQTGGRDLVAKIKKWIKESERNKRCIVDYG-AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEALTYLG-- 220 (353)
Q Consensus 145 d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG-~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~-~~~e~k~~l~-- 220 (353)
|.....+++..|......++ +.++...+ +.+.+.--+ + ++|..+...++.+|..++. +.+.. -.+.
T Consensus 59 d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~--~-----d~N~~v~~~~L~~L~~l~~~l~~~~-y~~~~~ 128 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRF--F-----ETNPAALIKVLELCKVIVELIRDTE-TPMSQE 128 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHT--T-----SCCHHHHHHHHHHHHHHHHHHHHTT-CCCCHH
T ss_pred CHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHH--h-----CCCHHHHHHHHHHHHHHHHHHHhcc-ccchHH
Confidence 55666778888877765433 23433322 223222111 1 2366777777777766531 11111 0122
Q ss_pred -CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCC
Q 018602 221 -SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSAS 299 (353)
Q Consensus 221 -~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~ 299 (353)
..-++|.++.=|....-..|..+-.++..+..+ .....+++.+++-++.. +.+.+..++..+.++...+
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v--------~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~- 198 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV--------VGPLKMTPMLLDALKSK-NARQRSECLLVIEYYITNA- 198 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH--------HCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-
Confidence 134788887766555556888888888777522 23335777777777665 7899999999999886543
Q ss_pred CCCchHHHHHHcCcH---HHHHHHhhhccccchhhhh
Q 018602 300 AADKPIQKFVDMGLV---SLLLETLVDAQRSLCEKPW 333 (353)
Q Consensus 300 ~~~~Nr~~~VeaGaV---~~LlelL~~~~~~~~E~aL 333 (353)
|-+ ...++ +.+.+++.|.+..+-+.|+
T Consensus 199 --G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl 228 (266)
T 2of3_A 199 --GIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAI 228 (266)
T ss_dssp --CSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHH
T ss_pred --CCC-----ccccccchHHHHHHHcCCCHHHHHHHH
Confidence 234 24478 9999999887766666666
No 129
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.63 E-value=2.9 Score=29.79 Aligned_cols=47 Identities=2% Similarity=-0.077 Sum_probs=33.9
Q ss_pred hhhhhhHHhhhccccch-hHH-HHHhHHHHhh---cCCccccccccccCCce
Q 018602 49 RLINLAKWLVESAWVAL-RLF-QERCEEELLW---AAEMIKIKAQDLKGKEV 95 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~-~~~-~eR~~~e~~~---g~~tcP~T~q~l~~~~l 95 (353)
+.|||-.+.+.+|++.. +.. =..+..+|+. ++.+||.-++++...++
T Consensus 21 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 44999999999998665 553 3445566664 57799999888866544
No 130
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=49.70 E-value=4.2 Score=32.20 Aligned_cols=52 Identities=10% Similarity=-0.088 Sum_probs=40.3
Q ss_pred hhhhhHHhhhcc-------ccch-hH-HHHHhHHHHhhcCCccccccccccCCceecCchh
Q 018602 50 LINLAKWLVESA-------WVAL-RL-FQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSL 101 (353)
Q Consensus 50 ~c~l~~~~m~d~-------~~~~-~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~~L 101 (353)
.|||=.+.+.+| ++.. +. |=..+..+|+..+.+||.-++.+....+.+++..
T Consensus 9 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 399999988888 6555 55 4455677788888999999999988888876543
No 131
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.98 E-value=4.9 Score=28.08 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=35.3
Q ss_pred hhhhhHH-hhhccc----cch-hHH-HHHhHHHH-hhcCCccccccccccCCceecCc
Q 018602 50 LINLAKW-LVESAW----VAL-RLF-QERCEEEL-LWAAEMIKIKAQDLKGKEVKVNT 99 (353)
Q Consensus 50 ~c~l~~~-~m~d~~----~~~-~~~-~eR~~~e~-~~g~~tcP~T~q~l~~~~l~pN~ 99 (353)
.|||-.+ .+.+|. +.. |.. =..+...| ..+..+||.-++++...+++|+.
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred cCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence 3999999 888884 333 543 23344444 45678999999999888888874
No 132
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=42.98 E-value=1.1e+02 Score=25.51 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=49.1
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHH-HHHhhcCC--CChhHHHHHHHHHHHhh
Q 018602 224 SMHCMVWFLK-SGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIES-LYTLIKEP--ICPTATEASFVVVYHMI 295 (353)
Q Consensus 224 ~l~~Lv~~L~-~gs~~~R~~Aa~lL~~Lss~-~~~~~~~IG~~~gai~~-LV~lL~~~--~s~~a~k~Al~aL~nLc 295 (353)
++..|.+=|+ +++......|..+|..+..- .......|++. +++.. |++++... .+...++.++..+..-.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~-~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ-DFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH-HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4566666676 47888889999999998743 34455567664 99999 89998532 23356666676666553
No 133
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=42.21 E-value=1.5e+02 Score=26.07 Aligned_cols=135 Identities=7% Similarity=0.042 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHhChh---hhhHH--HhcCCHHHHHHH-hhcccccccchhHHHHHHHHHHHHhcCCCChhHHhhcc
Q 018602 147 TGGRDLVAKIKKWIKESER---NKRCI--VDYGAVSVLAAA-FESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG 220 (353)
Q Consensus 147 ~~~~~Al~~Lr~Lakes~~---nR~~i--~~aG~i~~Lv~~-L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~k~~l~ 220 (353)
..+..++.-+..+++.... .+... ....++|.|+.= |.+. ...+++.|+.+|..+.... ..
T Consensus 70 ~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~-------k~~~~~~a~~~l~~~~~~~------~~ 136 (278)
T 4ffb_C 70 VAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS-------RATTKTQSMSCILSLCGLD------TS 136 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC-------CHHHHHHHHHHHHHHHHTS------SS
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc-------cHHHHHHHHHHHHHHHHhc------Cc
Confidence 3344566666666653221 12211 112345555542 3322 3456777777666542111 00
Q ss_pred CCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccch----HHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 221 SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH----RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 221 ~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Lss~~~----~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
...+++.+...+++.++..|..++..|..+...-. ..+..+ +.+++.+..++.+. ++..+..|..++..+..
T Consensus 137 ~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l---~~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 137 ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL---PELLKHVPQLAGHG-DRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH---HHHGGGHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH---HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHH
Confidence 11245667777888899999999998888752100 011111 23556677778776 88888889888888866
Q ss_pred CC
Q 018602 297 SA 298 (353)
Q Consensus 297 ~~ 298 (353)
+-
T Consensus 213 ~~ 214 (278)
T 4ffb_C 213 VT 214 (278)
T ss_dssp C-
T ss_pred Hh
Confidence 54
No 134
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=41.97 E-value=1.2e+02 Score=28.99 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 238 SRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 238 ~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
......+..|+.+..........+ +.++.|..|+..|... .+..++.|+..|..+|.++
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl-~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHH-TCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcchhhHHHHH-cChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCc
Confidence 444567777787774434445566 4458999999998655 8899999999999999986
No 135
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=40.23 E-value=1.2e+02 Score=26.66 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 238 SRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 238 ~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
......+..|+.+..........+ +.++.+..|+..|... ++..++.|+..|..+|.++
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl-~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHH-TSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCChHHHHHHH-cCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCC
Confidence 445667788888875434445566 4458999999998655 8899999999999999986
No 136
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=39.87 E-value=5.2 Score=33.12 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=30.1
Q ss_pred hhhhhhHHhhhccccch-hHHH-HHhHHHHhh-cCCccccccccc
Q 018602 49 RLINLAKWLVESAWVAL-RLFQ-ERCEEELLW-AAEMIKIKAQDL 90 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~-~~~~-eR~~~e~~~-g~~tcP~T~q~l 90 (353)
+.|||-.+++.+|+... +..+ ..+..+|+. +..+||.-++++
T Consensus 32 ~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34999999999998765 5543 445566665 445999987754
No 137
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=36.22 E-value=2.1e+02 Score=31.02 Aligned_cols=33 Identities=3% Similarity=-0.004 Sum_probs=24.5
Q ss_pred chHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 266 GAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 266 gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
..++.++++|.+..+|-.+..|..+|=.+|...
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Confidence 567788877665557888888888888887653
No 138
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=35.79 E-value=4.1e+02 Score=27.92 Aligned_cols=107 Identities=9% Similarity=-0.018 Sum_probs=68.1
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC-----------CCChhHHhhccCCCcHHHHHHHHhcCCHHHHHH
Q 018602 174 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF-----------PLAGEALTYLGSASSMHCMVWFLKSGDLSRRRN 242 (353)
Q Consensus 174 G~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~-----------~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~ 242 (353)
|+...|+..+.+... +..++.-|.-.|-+.. .++++.|..|. ..++..|.+.+...|..
T Consensus 35 ~~~~~L~~il~~~~~-----~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik-----~~ll~~l~~~~~~ir~~ 104 (960)
T 1wa5_C 35 GFGLTLLHVIASTNL-----PLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK-----KEIVPLMISLPNNLQVQ 104 (960)
T ss_dssp THHHHHHHHHHCTTS-----CHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH-----HHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH-----HHHHHHHHhCCHHHHHH
Confidence 678888888865421 2456666655555431 12233333331 23455555566777777
Q ss_pred HHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 243 TVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 243 Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
++.++-.++.. + .-+.=+++++.|++.++++ ++.....|+.+|..+|.
T Consensus 105 l~~~ia~ia~~-d----~p~~Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 105 IGEAISSIADS-D----FPDRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp HHHHHHHHHHH-H----STTTCTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHh-h----CccchhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 77777777532 1 1133368999999999876 67788999999999986
No 139
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.37 E-value=8.9 Score=26.62 Aligned_cols=44 Identities=9% Similarity=-0.047 Sum_probs=31.5
Q ss_pred hhhhhhHHhhhcc-------ccch-hH-HHHHhHHHHhhcCCccccccccccC
Q 018602 49 RLINLAKWLVESA-------WVAL-RL-FQERCEEELLWAAEMIKIKAQDLKG 92 (353)
Q Consensus 49 ~~c~l~~~~m~d~-------~~~~-~~-~~eR~~~e~~~g~~tcP~T~q~l~~ 92 (353)
..|+|-.+.+.+| ++.. +. |=..+..+|+..+.+||.-++++..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3499988888887 4443 44 4455677777789999998877754
No 140
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.52 E-value=3.4 Score=29.52 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=34.4
Q ss_pred hhhhhhhHHhhhccccch-hH-HHHHhHHHHhhcCCccccccccccCCc
Q 018602 48 VRLINLAKWLVESAWVAL-RL-FQERCEEELLWAAEMIKIKAQDLKGKE 94 (353)
Q Consensus 48 ~~~c~l~~~~m~d~~~~~-~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~ 94 (353)
.+.|+|-.+.+.+|++.. +. |=..+...|+..+.+||+-++.+...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 344999999999998654 55 334456667777899999888876443
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.18 E-value=1.6e+02 Score=25.95 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhccC-CCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 018602 129 EVLEINSKITAACK-SEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 207 (353)
Q Consensus 129 ~v~~ll~~l~s~~~-~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~ 207 (353)
.+..+|.+.++... ..|. +..-+|-.+.+.++.+- ..++.+|..-|.+. |+.++-.||++|..
T Consensus 8 ~~~~~i~kAT~~~~~~~dw----~~ileicD~I~~~~~~~-----k~a~ral~krl~~~-------n~~v~l~aL~LLe~ 71 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDW----ESILQICDLIRQGDTQA-----KYAVNSIKKKVNDK-------NPHVALYALEVMES 71 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCH----HHHHHHHHHHHTTSSCH-----HHHHHHHHHHHTCS-------SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCH----HHHHHHHHHHhCCCccH-----HHHHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence 45566777655432 2232 34445555554332211 12455566666533 45677778887766
Q ss_pred cCC-CChhHHhhccCCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Q 018602 208 LFP-LAGEALTYLGSASSMHCMVWFLKSG-DLSRRRNTVLVLREVI 251 (353)
Q Consensus 208 L~~-~~~e~k~~l~~~~~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Ls 251 (353)
+.. -...-...+++.++++.|+++++.. +...|.-...+|.+.+
T Consensus 72 ~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 72 VVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 531 1122344577888999999998764 6678888888888776
No 142
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=29.06 E-value=1.4e+02 Score=30.02 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=49.5
Q ss_pred hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCCCCCCchHHHHHHcC
Q 018602 233 KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMG 312 (353)
Q Consensus 233 ~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~~~~~~Nr~~~VeaG 312 (353)
.+|+.++|.-|+-.|-..-..=++.. +.+|..++++..+. +.+-++.|++.|-.+|.. ++..+.
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~------~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-----~~i~ki---- 101 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELA------DSAINAQLDLCEDE-DVSIRRQAIKELPQFATG-----ENLPRV---- 101 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGH------HHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-----TCHHHH----
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-----hhhhhH----
Confidence 36778888888888777653323321 26788888888776 777788888888888875 466664
Q ss_pred cHHHHHHHhh
Q 018602 313 LVSLLLETLV 322 (353)
Q Consensus 313 aV~~LlelL~ 322 (353)
+.+|+++|.
T Consensus 102 -aDvL~QlLq 110 (507)
T 3u0r_A 102 -ADILTQLLQ 110 (507)
T ss_dssp -HHHHHHHTT
T ss_pred -HHHHHHHHh
Confidence 356666664
No 143
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.00 E-value=10 Score=26.07 Aligned_cols=37 Identities=3% Similarity=-0.140 Sum_probs=25.9
Q ss_pred hhhhhhHHhhhccccch-hHH-HHHhHHHHhh---cCCcccc
Q 018602 49 RLINLAKWLVESAWVAL-RLF-QERCEEELLW---AAEMIKI 85 (353)
Q Consensus 49 ~~c~l~~~~m~d~~~~~-~~~-~eR~~~e~~~---g~~tcP~ 85 (353)
+.|||-.+.+.+|++.. +.. =..+..+|+. ++.+||.
T Consensus 21 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (63)
T 2ysj_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (63)
T ss_dssp CBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred CCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence 44999999999998765 553 3445556665 5668985
No 144
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=27.58 E-value=3.2e+02 Score=27.38 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC
Q 018602 150 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP 210 (353)
Q Consensus 150 ~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~ 210 (353)
.+.-+.|-..+|.++.-++.- ...+..++..+ ++++++|+.++.-|+.
T Consensus 28 ~~~y~~Il~~~kg~~k~K~La-----aQ~I~kffk~F--------P~l~~~Ai~a~lDLcE 75 (507)
T 3u0r_A 28 KDAYQVILDGVKGGTKEKRLA-----AQFIPKFFKHF--------PELADSAINAQLDLCE 75 (507)
T ss_dssp HHHHHHHHHGGGSCHHHHHHH-----HHHHHHHGGGC--------GGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCHHHHHHH-----HHHHHHHHhhC--------hhhHHHHHHHHHHHHh
Confidence 456677777777776655542 24445566555 4567888877766643
No 145
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=27.13 E-value=1.8e+02 Score=27.70 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcCC
Q 018602 238 SRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 298 (353)
Q Consensus 238 ~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~~ 298 (353)
......+..|+.+..........+ +.++.+..|+..+... .+..++.++..|..+|.++
T Consensus 73 ~~~~~~l~CLkalmN~~~Gl~~vl-~~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHH-HSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH-cCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCC
Confidence 344567777888875433444556 4458899999988654 7889999999999999986
No 146
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.54 E-value=17 Score=26.53 Aligned_cols=54 Identities=11% Similarity=0.006 Sum_probs=35.8
Q ss_pred hhhhhhHHhhhc----cccch-hH-HHHHhHHHHhhc---CCccccccccccCC---ceecCchhh
Q 018602 49 RLINLAKWLVES----AWVAL-RL-FQERCEEELLWA---AEMIKIKAQDLKGK---EVKVNTSLL 102 (353)
Q Consensus 49 ~~c~l~~~~m~d----~~~~~-~~-~~eR~~~e~~~g---~~tcP~T~q~l~~~---~l~pN~~L~ 102 (353)
+.|||-.+.+.+ |++.. +. |=..+...|+.. ..+||.-++++... .+.+|+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~~~ 81 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLTVL 81 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTTTT
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHHHH
Confidence 349999999888 87654 55 334455556654 48999988877643 455565543
No 147
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=26.52 E-value=99 Score=30.86 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 150 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 150 ~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
.=|...|-.+++..++-|..+.+-|+=..+..++... |++|+.+||.++-.+
T Consensus 423 aVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-------d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 423 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-------DSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-------SHHHHHHHHHHHHHH
T ss_pred EeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-------CHHHHHHHHHHHHHH
Confidence 3478999999999999999888889988888888654 568999998776543
No 148
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.46 E-value=31 Score=24.55 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=35.8
Q ss_pred hhhhhhHHhhhccc---cch-hH-HHHHhHHHHhhcCCccccccccccCCceecCc
Q 018602 49 RLINLAKWLVESAW---VAL-RL-FQERCEEELLWAAEMIKIKAQDLKGKEVKVNT 99 (353)
Q Consensus 49 ~~c~l~~~~m~d~~---~~~-~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~ 99 (353)
..|+|-.+.+.++. +.. +. |=..+...|+..+.+||.-++++....+.||-
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCC
Confidence 34998888877653 222 44 33445667788889999999999887777663
No 149
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=24.76 E-value=1.8e+02 Score=24.22 Aligned_cols=71 Identities=8% Similarity=0.011 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhCh-hhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 018602 128 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 206 (353)
Q Consensus 128 ~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~-~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~ 206 (353)
+.++.+.++|.. +++..+..|+.=|-.+.|.+. ..+..+++..+...|+.++... .+..|++.++.++.
T Consensus 52 eA~ral~krl~~----~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~------~~~~Vk~kil~li~ 121 (163)
T 1x5b_A 52 DCLKAIMKRVNH----KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK------AHPKVCEKLKSLMV 121 (163)
T ss_dssp HHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC------CCHHHHHHHHHHHH
Confidence 455666777754 466778888888888888754 3555566667888888888532 24678888888776
Q ss_pred hc
Q 018602 207 LL 208 (353)
Q Consensus 207 ~L 208 (353)
..
T Consensus 122 ~W 123 (163)
T 1x5b_A 122 EW 123 (163)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.28 E-value=2.2e+02 Score=24.63 Aligned_cols=106 Identities=11% Similarity=0.018 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccC-CCChhhHHHHHHHHHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 018602 130 VLEINSKITAACK-SEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 208 (353)
Q Consensus 130 v~~ll~~l~s~~~-~~d~~~~~~Al~~Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L 208 (353)
+..++.+..+... +.|. ...-+|-.+.+.++.+ .-.++..|..-|.+. |+.++-.||.+|-.+
T Consensus 6 ~~~~ie~AT~~~~~~~dw----~~~leicd~i~~~~~~-----~k~a~r~l~krl~~~-------n~~~~l~aL~Lle~~ 69 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDW----PSILLICDEINQKDVT-----PKNAFAAIKKKMNSP-------NPHSSCYSLLVLESI 69 (220)
T ss_dssp HHHHHHHHHCTTCSSCCH----HHHHHHHHHHHTTSSC-----HHHHHHHHHHHHTCS-------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCH----HHHHHHHHhhcCCCcC-----HHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 5556666654321 2232 3444555555543321 112445555555433 466777888887765
Q ss_pred CCC-ChhHHhhccCCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Q 018602 209 FPL-AGEALTYLGSASSMHCMVWFLKSG-DLSRRRNTVLVLREVI 251 (353)
Q Consensus 209 ~~~-~~e~k~~l~~~~~l~~Lv~~L~~g-s~~~R~~Aa~lL~~Ls 251 (353)
... ...-...+++..+++.++.++++. +.+.|.-+..++..-+
T Consensus 70 vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 70 VKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 321 122334577778999999988764 5677777777777665
No 151
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=23.75 E-value=2.7e+02 Score=22.00 Aligned_cols=41 Identities=7% Similarity=0.107 Sum_probs=28.0
Q ss_pred ChH-HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhChh-hhhHHHhc
Q 018602 126 SSV-EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESER-NKRCIVDY 173 (353)
Q Consensus 126 ~~~-~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~~-nR~~i~~a 173 (353)
.++ .|...+..+ +++...+-+++++.+++.++. .|+.+.++
T Consensus 37 ap~~~IS~~Lasl-------pp~Ql~eiL~qmK~~~~~nP~~a~~LL~q~ 79 (109)
T 2l9b_A 37 TPAMMISSELAKK-------PKEVQLKFLQKFQEWTRAHPEDAASLLELC 79 (109)
T ss_dssp CHHHHHHHHHHTS-------CHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_pred chHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHhCHHHHHHHHHHC
Confidence 344 565555554 557778999999999999874 44455554
No 152
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=23.21 E-value=1.2e+02 Score=24.59 Aligned_cols=70 Identities=10% Similarity=-0.057 Sum_probs=45.6
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC-CCChhHHhhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 018602 175 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF-PLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 251 (353)
Q Consensus 175 ~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~-~~~~e~k~~l~~~~~l~~Lv~~L~~gs~~~R~~Aa~lL~~Ls 251 (353)
++..|..-|.+. ++.++-.||++|-.+. +-...-...+++.++++.++++++..+...|.-...++.+.+
T Consensus 43 a~rai~Krl~~~-------n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHK-------DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCS-------SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-------ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 345555555433 3455666666665542 112233445677789999999998888888888888888775
No 153
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=21.85 E-value=5.1e+02 Score=24.48 Aligned_cols=131 Identities=11% Similarity=0.160 Sum_probs=81.4
Q ss_pred HHHHHHhChhhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhH-Hhhcc-C-CCcHHHHHHHH
Q 018602 156 IKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEA-LTYLG-S-ASSMHCMVWFL 232 (353)
Q Consensus 156 Lr~Lakes~~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L~~L~~~~~e~-k~~l~-~-~~~l~~Lv~~L 232 (353)
||...|...-.|..+-.. ..-.+...+.. .+.++.-+|.+++.-|..-+... -+-+. + ..+....-++|
T Consensus 147 LRecir~e~la~~iL~~~-~f~~fF~yv~~-------~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll 218 (341)
T 1upk_A 147 LRECIRHEPLAKIILWSE-QFYDFFRYVEM-------STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL 218 (341)
T ss_dssp HHHHHTSHHHHHHHHHSG-GGGHHHHHTTC-------SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHhccH-HHHHHHHHhcC-------CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh
Confidence 455555444444444333 22233343332 25678888888776553322111 11122 1 24788888999
Q ss_pred hcCCHHHHHHHHHHHHHHhccchHH----HHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhcC
Q 018602 233 KSGDLSRRRNTVLVLREVISSDHRR----VNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 297 (353)
Q Consensus 233 ~~gs~~~R~~Aa~lL~~Lss~~~~~----~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~~ 297 (353)
.++++-+|.++..+|-+|- .+..+ ..-|++ +.-+.-++.+|++. +..-.-.|.++..--...
T Consensus 219 ~S~NYVTkRQSlKLLgelL-ldr~N~~vM~~Yis~-~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 219 HSENYVTKRQSLKLLGELL-LDRHNFTIMTKYISK-PENLKLMMNLLRDK-SRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp TCSSHHHHHHHHHHHHHHH-HSGGGHHHHHHHTTC-HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHC
T ss_pred cCCcchhHHHHHHHHHHHH-hCchHHHHHHHHhCC-HHHHHHHHHHhcCc-hhchhhhhhhheeeeeeC
Confidence 9999999999999999997 33322 345544 48899999999987 766666777776655544
No 154
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=21.12 E-value=3.1e+02 Score=29.79 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=46.3
Q ss_pred cCCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 018602 220 GSASSMHCMVWFL-KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 296 (353)
Q Consensus 220 ~~~~~l~~Lv~~L-~~gs~~~R~~Aa~lL~~Lss~~~~~~~~IG~~~gai~~LV~lL~~~~s~~a~k~Al~aL~nLc~ 296 (353)
.++..++.++..| ++++...|..|+.+|=.++.- . |. +.++..|..+..|. +....+.|+.+|--+-.
T Consensus 608 g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aG-n------~~-~~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAG-K------GL-QSAIDVLDPLTKDP-VDFVRQAAMIALSMILI 676 (963)
T ss_dssp SSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS-S------CC-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC-C------Cc-HHHHHHHHHHccCC-CHHHHHHHHHHHHHHhc
Confidence 3566778888755 467999999998887766422 1 11 25677778888776 66777777777766643
No 155
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=20.98 E-value=2.2e+02 Score=24.00 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHhCh-hhhhHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 018602 127 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 205 (353)
Q Consensus 127 ~~~v~~ll~~l~s~~~~~d~~~~~~Al~~Lr~Lakes~-~nR~~i~~aG~i~~Lv~~L~s~~~~~~~~~~~v~E~AL~~L 205 (353)
++.++.+.+++.+ +++..+..|+.=|-.+.|.+. ..+..+++..|..-|+.++...-.+. ..+.+|++.++.++
T Consensus 49 k~A~ral~krl~~----~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~-~~~~~Vk~kil~li 123 (171)
T 1juq_A 49 QIAVRLLAHKIQS----PQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGD-RVSEKVKTKVIELL 123 (171)
T ss_dssp HHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCT-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCC-CCCHHHHHHHHHHH
Confidence 3455667777754 467788889999999999864 45556777788888998885321000 13578899998888
Q ss_pred Hhc
Q 018602 206 TLL 208 (353)
Q Consensus 206 ~~L 208 (353)
...
T Consensus 124 ~~W 126 (171)
T 1juq_A 124 YSW 126 (171)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 156
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=20.53 E-value=47 Score=25.77 Aligned_cols=49 Identities=10% Similarity=-0.037 Sum_probs=35.3
Q ss_pred hhhhHHhhhcc-------ccch-hH-HHHHhHHHHhhcCCccccccccccCCceecCc
Q 018602 51 INLAKWLVESA-------WVAL-RL-FQERCEEELLWAAEMIKIKAQDLKGKEVKVNT 99 (353)
Q Consensus 51 c~l~~~~m~d~-------~~~~-~~-~~eR~~~e~~~g~~tcP~T~q~l~~~~l~pN~ 99 (353)
|++-.+.+.++ ++.. +. |=..+..+|+..+.+||+=++.+....++|++
T Consensus 75 C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp CTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 77766666665 4333 33 44446677888899999999999888888875
Done!