BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018603
(353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 195 bits (495), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 195/358 (54%), Gaps = 59/358 (16%)
Query: 40 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
M H+YK QLQ+Y + NL LP+Y+ EREGPPHA RF+C VT GQT++S +FFPTLK AE
Sbjct: 1 MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60
Query: 100 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 159
H AAK+A+ SL+ + D V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE
Sbjct: 61 HAAAKIAVASLTPQSPEGID-VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 119
Query: 160 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQS 217
G+VFSG+ AK+KK AEMSAAKVA+M +K N +Q P L S + Q D +S+ S
Sbjct: 120 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS 176
Query: 218 NVTADLHHNIQTAGRLVFNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEF 271
++H Q + ++V P++ KV +E +L N + L++ P
Sbjct: 177 --PQEIHS--QPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTN 232
Query: 272 SSSSDLSASSGVEKGMPSSSLPLE------CTVD-PRVDPIAQSVRA-----------DG 313
+ + G++ + SSSLP+ T++ P + I +++ A DG
Sbjct: 233 DGTLSALTTDGMKMNIASSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDG 292
Query: 314 ---RTCKI----------------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 346
+C + + RP P + P+ + +L RD++++A+
Sbjct: 293 SETSSCVVDESEKKKLIMGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 350
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES Q+ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 103 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
A+VAL +L SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
TVE+ G F+G AK+KKQAE +AA A+ LK+
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQ 155
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 39 DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA 98
D +YKN LQ Q+ PLP Y+ R G H F V + G T+ K+A
Sbjct: 83 DETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDP-AKNKKQA 141
Query: 99 EHEAAKVALMSL 110
E AA A SL
Sbjct: 142 EKNAAMAAWSSL 153
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 96/157 (61%), Gaps = 7/157 (4%)
Query: 43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
+YKNQLQ Q+ LP Y C REGP HA RFK VT +G+T++ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 103 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
A+VAL LSL D++ +YKN+LQE A + LPVY T +SG H+P F
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192
STVE+ G F+G AK+KK AE +AA A+ LK+ N
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQSN 157
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 122 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 180
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 181 AKVAYMRLKEPNPS 194
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 39 DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA 98
D +YKN LQ + L LP+Y+ R GP H+ F V + G ++ T K A
Sbjct: 83 DETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFSSTVELAGMSFAGDP-AKTKKHA 141
Query: 99 EHEAAKVALMSL 110
E AA A SL
Sbjct: 142 EKNAAMAAWSSL 153
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 141 bits (355), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 99/154 (64%), Gaps = 4/154 (2%)
Query: 41 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 100
Q YK+QLQ Y QKK LP Y REGP HASRFK VT+DG+ +ES ++F T+KEAE
Sbjct: 84 QSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAES 143
Query: 101 EAAKVALMSLSLDKFQQD----DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 156
AAK+ALMSL + + + YKN+LQELAQK ++LPVY+T G P F S
Sbjct: 144 AAAKLALMSLPQEASSSEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 157 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
TV F G+ A +KKQAEM+AA+VA+ ++
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFED 237
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQ-FFPTLKEAEHE 101
+YK++LQ Q++ P Y+ GP HA F V+++G + + + + KEA +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 102 AAKVAL-----MSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 156
AAK A + L ++ YK+ LQ AQK+ LP Y T + G HA F S
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120
Query: 157 TVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKE 190
V V G+ F S + + K+AE +AAK+A M L +
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQ 155
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 306 AQSVRADGRTCKI----IRVRPNRPNMKFPEGSSVL-HRDNQWVA 345
A +V + G C + ++V P RP++ PEG++VL D+ WVA
Sbjct: 389 ASTVSSTGCGCSLLTNRVQVYPRRPDLVLPEGATVLPFSDDVWVA 433
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 103 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
A+VAL +L SL D++ +YKN+LQE A + LPVY + +SG H PTF
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
TVE+ G F+G+ AK+KKQAE +AA A+ L++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRK 155
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 122 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 180
+YKN LQELAQ+ ++LP Y + G HAP F ++V GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 181 AKVAYMRLKEPNPSQ 195
A+VA L PS+
Sbjct: 61 AEVALSALSSKGPSK 75
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 39 DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA 98
D +YKN LQ + L LP+Y+ R GP H F C V + G ++ T K+A
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGES-AKTKKQA 141
Query: 99 EHEAAKVALMSL 110
E AA A SL
Sbjct: 142 EKNAAIAAWFSL 153
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 94/155 (60%), Gaps = 7/155 (4%)
Query: 43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+T+ES F TL+ AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 103 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
A+VAL L SL D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
TVE+ G F+G K+KKQA+ +AA A+ LK+
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQ 155
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 36 KSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTL 95
K D +YKN LQ + L LP+Y+ R GP H F C V + G T+ + T
Sbjct: 80 KVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGK-TK 138
Query: 96 KEAEHEAAKVALMSL 110
K+A+ AA A L
Sbjct: 139 KQAQKNAAMAAWSEL 153
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 96/155 (61%), Gaps = 7/155 (4%)
Query: 43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 103 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
A+V+L L SL D++ +YKN+LQE A + LP+Y + +SG H P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
TVE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKK 155
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 39 DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA 98
D +YKN LQ + L LPMY+ R G H F C V + G T+ + + T K+A
Sbjct: 83 DETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAGMTF-TGESAKTKKQA 141
Query: 99 EHEAAKVALMSL 110
E AA A SL
Sbjct: 142 EKNAAIAAWSSL 153
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES FF TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 103 AKVALM-------SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
A+VAL S SL D++ +YKN+LQE+AQ+ LP Y T++SG H P F
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
TVE+ G F+G AK+KKQAE +AA A+ L++
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQ 155
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 39 DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA 98
D +YKN LQ Q+ PLP Y+ ER G H F C V + G T+ K+A
Sbjct: 83 DETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAK-NKKQA 141
Query: 99 EHEAAKVALMSL 110
E AA A SL
Sbjct: 142 EKNAASAAWSSL 153
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 30 TVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESH 89
T DV +++K++LQ Y QK LP P+Y +EGP H S F+ V +DG Y S
Sbjct: 2 TSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL 61
Query: 90 QFFPTLKEAEHEAAKVALMSLSL-DKFQQ------DDSVLYKNVLQELAQKEAYALPVYN 142
F K AE AA+VAL L+ + Q ++ L KN+LQE AQK YA+P+Y
Sbjct: 62 PGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQ 121
Query: 143 T-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 189
K F TVE+GG ++G ++KK AE+SA + A + ++
Sbjct: 122 CQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 169
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 42 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 101
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y+S F K AE
Sbjct: 32 YVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 102 AAKVALMSL--------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 153
AA+VALM + ++ Q+ + L KN+LQE AQK YA+P Y +S AP
Sbjct: 92 AAEVALMEIVKSIPANANIPAVQE--TGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 154 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 189
F+ TVE+GG + G A++KK AE+ AA+ A + ++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 118 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 176
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 177 EMSAAKVAYMRL 188
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 42 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 101
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y+S F K AE
Sbjct: 32 YVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 102 AAKVALMSL--------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 153
AA+VALM + ++ Q+ + L KN+LQE AQK YA+P Y +S AP
Sbjct: 92 AAEVALMEIVKSIPANANIPAVQE--TGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 154 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 189
F+ TVE+GG + G A++KK AE+ AA+ A + ++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 118 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 176
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 177 EMSAAKVAYMRL 188
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 42 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 101
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y S F K AE
Sbjct: 34 YVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQS 93
Query: 102 AAKVALMSL--------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 153
AA+VALM + ++ Q ++ L KN+LQE AQK YA+P Y + AP
Sbjct: 94 AAEVALMEIVKSIPANANIPAVQ--ETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP- 150
Query: 154 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 189
F+ TVE+GG + G A++KK AE+ AA+ A + ++
Sbjct: 151 FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 118 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 176
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 177 EMSAAKVAYMRL 188
E SAA+VA M +
Sbjct: 91 EQSAAEVALMEI 102
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 12/156 (7%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
YK++LQ Y Q+ N LP+Y + +G H +FK V +DG+ + S +K+AE +AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 104 KVALMSL---------SLDKFQ--QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAP 152
KVA +L D F+ D V K++L E K P Y+ ++ S P
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTP 158
Query: 153 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 188
+VS+V G ++G A++KK AE AA+ A L
Sbjct: 159 -YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>sp|Q73NX5|RNC_TREDE Ribonuclease 3 OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=rnc PE=3 SV=1
Length = 246
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 123 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
YK++LQEL QK+ +P Y K+ SG H TF +V + G+V+ K+KK+AE S A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 182 KVAYMRL 188
KVAY L
Sbjct: 232 KVAYENL 238
Score = 38.5 bits (88), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 29 STVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYE 87
ST++ V + + + YK+ LQ QKK +P Y ++ GP H F V+I+G+ Y
Sbjct: 158 STIHSVLEKKFISD-YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYG 216
Query: 88 SHQFFPTLKEAEHEAAKVALMSL 110
T KEAE AKVA +L
Sbjct: 217 PLS-GKTKKEAEQSVAKVAYENL 238
>sp|Q6AFJ4|RNC_LEIXX Ribonuclease 3 OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=rnc
PE=3 SV=1
Length = 237
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 124 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 183
K LQE A PVY +G H+ TF +TV+VGG V + SKKQAEM+AA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 184 AYMRL 188
A+ L
Sbjct: 223 AWTAL 227
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 181
+K LQEL E +P Y ++SG H TF +TV V G+ + SG+G +SKK+AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEG-RSKKEAEQQAA 222
Query: 182 KVAYMRLK 189
+ A+ ++
Sbjct: 223 ESAWKAIR 230
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
+K LQ T + L +P Y E GP H F+ V + GQTY S + + KEAE +AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGE-GRSKKEAEQQAA 222
Query: 104 KVALMSL 110
+ A ++
Sbjct: 223 ESAWKAI 229
>sp|Q91ZS8|RED1_MOUSE Double-stranded RNA-specific editase 1 OS=Mus musculus GN=Adarb1
PE=1 SV=1
Length = 711
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 121 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 180
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 181 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 212
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 145 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 194
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 195 QGPALVSPDIQAQA 208
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>sp|P55265|DSRAD_HUMAN Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens
GN=ADAR PE=1 SV=4
Length = 1226
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 63 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 110
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 111 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 143
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 144 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 188
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 79/210 (37%), Gaps = 40/210 (19%)
Query: 65 EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL-----SLDKFQQDD 119
E+ GPPH RFK +V I+G+ + + + K A+ +AA A+ L + D + ++
Sbjct: 525 EQSGPPHEPRFKFQVVINGREFPPAEA-GSKKVAKQDAAMKAMTILLEEAKAKDSGKSEE 583
Query: 120 SVLYKN----------------------------VLQELAQKEAYALPVYNTKQSGESHA 151
S Y L E K + + G +H
Sbjct: 584 SSHYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHE 643
Query: 152 PTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYS 211
P F V VG + F A SKK A+ AA+ A L G A S Q +
Sbjct: 644 PKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL------HGEATNSMASDNQPEGM 697
Query: 212 SSSLQSNVTADLHHNIQTAGRLVFNPNSMP 241
S N+ + + + ++ G LV N+ P
Sbjct: 698 ISESLDNLESMMPNKVRKIGELVRYLNTNP 727
>sp|P51400|RED1_RAT Double-stranded RNA-specific editase 1 OS=Rattus norvegicus
GN=Adarb1 PE=1 SV=1
Length = 711
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 121 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 180
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 181 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 212
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 145 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 194
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 195 QGPALVSPDIQAQA 208
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>sp|P78563|RED1_HUMAN Double-stranded RNA-specific editase 1 OS=Homo sapiens GN=ADARB1
PE=1 SV=1
Length = 741
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 121 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 180
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 181 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 212
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 145 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 194
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 195 QGPALVSPDIQAQA 208
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>sp|Q63184|E2AK2_RAT Interferon-induced, double-stranded RNA-activated protein kinase
OS=Rattus norvegicus GN=Eif2ak2 PE=1 SV=1
Length = 513
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 39 DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA 98
D Y ++L Y+Q + + GPPH RF +V I+ + + + + +EA
Sbjct: 4 DTPGFYVDKLNKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEG-RSKQEA 62
Query: 99 EHEAAKVALMSLSLDKFQQDDSVL-----------YKNVLQELAQKEAYALPVYNTKQSG 147
++ AAK+A+ L D + DS Y ++ AQKE LPV
Sbjct: 63 KNNAAKLAVEIL--DNENKVDSHTDASEQGLIEGNYIGLVNSFAQKEN--LPVNFELCDP 118
Query: 148 ESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ 195
+S P F+ ++G + +KK+A+ AAK AY +L E +PS+
Sbjct: 119 DSQLPHRFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKLSEKSPSK 167
>sp|Q5YS08|RNC_NOCFA Ribonuclease 3 OS=Nocardia farcinica (strain IFM 10152) GN=rnc PE=3
SV=1
Length = 240
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 181
+K LQEL + +P Y +G H F +T +GG + GQG +SKK+AE AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAY-GQGVGRSKKEAEQKAA 229
Query: 182 KVAYMRL 188
AY L
Sbjct: 230 GAAYQAL 236
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
+K LQ T ++ L +P Y GP H F I G+ Y + KEAE +AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAY-GQGVGRSKKEAEQKAA 229
Query: 104 KVALMSLS 111
A +L+
Sbjct: 230 GAAYQALT 237
>sp|B2A2N1|RNC_NATTJ Ribonuclease 3 OS=Natranaerobius thermophilus (strain ATCC BAA-1301
/ DSM 18059 / JW/NM-WN-LF) GN=rnc PE=3 SV=1
Length = 230
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
YK ++QEL Q P Y K+SG H +FV+ V++ EV KSKK+AE +AA
Sbjct: 162 YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNEVVGRGSGKSKKEAEQNAA 221
Query: 182 KVAYMRL 188
A+ +L
Sbjct: 222 HFAFQKL 228
>sp|Q8EXX3|RNC_LEPIN Ribonuclease 3 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=rnc
PE=3 SV=1
Length = 247
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 116 QQDDSVL-YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSK 173
++++SV YK LQE +QK LP+Y TK +SG HA TF V + + + SK
Sbjct: 169 EKEESVRDYKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSK 228
Query: 174 KQAEMSAAKVAYMRLKE 190
K AE +AAK Y R+++
Sbjct: 229 KSAEQNAAKELYNRIRK 245
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
YK QLQ Y+QK LP+Y + E GP HA F+ V I Q +E+ + K AE A
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQ-WEASGSGVSKKSAEQNA 235
Query: 103 AK 104
AK
Sbjct: 236 AK 237
>sp|Q75FW5|RNC_LEPIC Ribonuclease 3 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=rnc PE=3 SV=1
Length = 247
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 116 QQDDSVL-YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSK 173
++++SV YK LQE +QK LP+Y TK +SG HA TF V + + + SK
Sbjct: 169 EKEESVRDYKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSK 228
Query: 174 KQAEMSAAKVAYMRLKE 190
K AE +AAK Y R+++
Sbjct: 229 KSAEQNAAKELYNRIRK 245
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
YK QLQ Y+QK LP+Y + E GP HA F+ V I Q +E+ + K AE A
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQ-WEASGSGVSKKSAEQNA 235
Query: 103 AK 104
AK
Sbjct: 236 AK 237
>sp|Q660G7|RNC_BORGA Ribonuclease 3 OS=Borrelia garinii (strain PBi) GN=rnc PE=3 SV=1
Length = 245
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 115 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 173
F + D YK++LQE QK+ P Y K+ G H F + VG + S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSK 225
Query: 174 KQAEMSAAKVAYMRLKEPN 192
K+AEM AA+VA +++ N
Sbjct: 226 KEAEMRAAEVALKAMEDIN 244
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV-GEKFISNGKGKSKKEAEMRA 232
Query: 103 AKVALMSL 110
A+VAL ++
Sbjct: 233 AEVALKAM 240
>sp|Q0SMF0|RNC_BORAP Ribonuclease 3 OS=Borrelia afzelii (strain PKo) GN=rnc PE=3 SV=1
Length = 245
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 115 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 173
F + D YK++LQE QK+ P Y K+ G H F + VG + S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSK 225
Query: 174 KQAEMSAAKVAYMRLKEPN 192
K+AEM AA+VA +++ N
Sbjct: 226 KEAEMRAAEVALKAMEDIN 244
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYV-GEKFISNGKGKSKKEAEMRA 232
Query: 103 AKVALMSL 110
A+VAL ++
Sbjct: 233 AEVALKAM 240
>sp|Q8KAN7|RNC_CHLTE Ribonuclease 3 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025
/ TLS) GN=rnc PE=3 SV=1
Length = 272
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 25 NATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDG 83
N I+ V D+HK + ++ YK++L YTQ + LP P+Y+ EG H F +V+ +G
Sbjct: 172 NHVIAKV-DLHKLVEAEYNYKSRLIEYTQSRQLPPPLYTVITEEGAEHEKTFVVEVSCNG 230
Query: 84 QTYESHQFFPTLKEAEHEAAKVALMSL 110
Q P K+AE AAK A+ L
Sbjct: 231 QPL-GRGTAPRKKDAEQLAAKEAMKRL 256
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 100 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTV 158
H AKV L L ++ YK+ L E Q P+Y + G H TFV V
Sbjct: 173 HVIAKVDLHKLVEAEYN------YKSRLIEYTQSRQLPPPLYTVITEEGAEHEKTFVVEV 226
Query: 159 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK--------EPNP 193
G+ A KK AE AAK A RL+ EP+P
Sbjct: 227 SCNGQPLGRGTAPRKKDAEQLAAKEAMKRLESGDLGNLNEPSP 269
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 183 VAYMRLK 189
A+ ++
Sbjct: 245 SAWRSIR 251
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
+K LQ T + L +P Y GP H F + G +Y + + KEAE +AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGT-GRSKKEAEQQAA 243
Query: 104 KVALMSL 110
+ A S+
Sbjct: 244 ESAWRSI 250
>sp|Q04R64|RNC_LEPBJ Ribonuclease 3 OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain JB197) GN=rnc PE=3 SV=1
Length = 247
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 123 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 180
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDQWEASGYGA-SKKIAEQNA 235
Query: 181 AKVAYMRLK 189
AK Y+R++
Sbjct: 236 AKELYIRIR 244
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
YK QLQ Y+QK LP+Y + E GP H+ F+ V I Q +E+ + + K AE A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDQ-WEASGYGASKKIAEQNA 235
Query: 103 AK 104
AK
Sbjct: 236 AK 237
>sp|O51648|RNC_BORBU Ribonuclease 3 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=rnc PE=3 SV=2
Length = 245
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 115 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 173
F + D YK++LQE QK+ P Y K+ G H F + VG S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSK 225
Query: 174 KQAEMSAAKVAYMRLKEPN 192
K+AEM AA+VA ++ N
Sbjct: 226 KEAEMRAAEVALKAMENIN 244
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV-GENFISNGKGKSKKEAEMRA 232
Query: 103 AKVALMSL 110
A+VAL ++
Sbjct: 233 AEVALKAM 240
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 183 VAYMRLK 189
A+ ++
Sbjct: 235 SAWRAIR 241
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
+K LQ T + L +P Y GP H F + G +Y + + KEAE +AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGT-GRSKKEAEQQAA 233
Query: 104 KVA 106
+ A
Sbjct: 234 ESA 236
>sp|Q2GIW0|RNC_ANAPZ Ribonuclease 3 OS=Anaplasma phagocytophilum (strain HZ) GN=rnc PE=3
SV=1
Length = 236
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 124 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
K LQE AQ +A+P Y +SG HAP F V V G+ G K KK AE++AAK
Sbjct: 166 KTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHATGCK-KKYAEIAAAK 224
Query: 183 VAYMRLKEPN 192
+ ++ + N
Sbjct: 225 LMLEKVTKQN 234
>sp|Q99MU3|DSRAD_MOUSE Double-stranded RNA-specific adenosine deaminase OS=Mus musculus
GN=Adar PE=1 SV=2
Length = 1178
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 63 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 110
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 582 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 640
Query: 111 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 147
SLD+ + V Y N L E A+ +A QSG
Sbjct: 641 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 700
Query: 148 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 188
H P FV +VGG F A SKKQ + AA A L
Sbjct: 701 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 36/160 (22%)
Query: 65 EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYK 124
E+ GP H RFK +V I+G+ + + K+ + A V M++ L + + DS +
Sbjct: 478 EQSGPSHEPRFKFQVVINGREFPPAE--AGSKKVAKQDAAVKAMAILLREAKAKDSGQPE 535
Query: 125 NV----LQELAQKEA-------YALPVYNTK-----------------------QSGESH 150
++ ++E ++K A A +++ K + G +H
Sbjct: 536 DLSHCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAH 595
Query: 151 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
P F V VG + F A SKK A+ AA+ A L+E
Sbjct: 596 DPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKALQE 635
>sp|Q2SL32|RNC_HAHCH Ribonuclease 3 OS=Hahella chejuensis (strain KCTC 2396) GN=rnc PE=3
SV=1
Length = 226
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 38 RDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLK 96
+D Q K +LQ Y Q + L LP Y +G HA F + IDG + + + +
Sbjct: 149 KDTQKDSKTRLQEYLQARQLNLPRYEVISVQGEAHAQTFHVRCEIDGLSDATEGTGSSRR 208
Query: 97 EAEHEAAKVALMSLSLDK 114
AE +AAK AL++L +D+
Sbjct: 209 VAEQKAAKQALLALGVDQ 226
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 107 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGG--E 163
L L+L Q+D K LQE Q LP Y GE+HA TF E+ G +
Sbjct: 143 LQKLNLKDTQKDS----KTRLQEYLQARQLNLPRYEVISVQGEAHAQTFHVRCEIDGLSD 198
Query: 164 VFSGQGAKSKKQAEMSAAKVAYMRL 188
G G+ S++ AE AAK A + L
Sbjct: 199 ATEGTGS-SRRVAEQKAAKQALLAL 222
>sp|Q053L4|RNC_LEPBL Ribonuclease 3 OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) GN=rnc PE=3 SV=1
Length = 247
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 123 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 180
YK LQE +QK LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKMFQVSVRIRDQWEASGYGA-SKKIAEQNA 235
Query: 181 AKVAYMRLK 189
AK Y+R++
Sbjct: 236 AKELYIRIR 244
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
YK QLQ Y+QK LP+Y + E GP H+ F+ V I Q +E+ + + K AE A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKMFQVSVRIRDQ-WEASGYGASKKIAEQNA 235
Query: 103 AK 104
AK
Sbjct: 236 AK 237
>sp|Q3ZXY9|RNC_DEHSC Ribonuclease 3 OS=Dehalococcoides sp. (strain CBDB1) GN=rnc PE=3
SV=1
Length = 237
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
YK+ LQEL Q + P Y T SG H F++ V VF+ +SKK+AE +AA
Sbjct: 161 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 220
Query: 182 KVA 184
KVA
Sbjct: 221 KVA 223
>sp|Q9NS39|RED2_HUMAN Double-stranded RNA-specific editase B2 OS=Homo sapiens GN=ADARB2
PE=1 SV=1
Length = 739
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 179
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 180
Query: 180 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 216
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>sp|A0LGM1|RNC_SYNFM Ribonuclease 3 OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=rnc PE=3 SV=1
Length = 242
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 114 KFQQDDSVL------YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFS 166
+F++ + VL YK LQEL Q PVY ++ G H TF V + G+V +
Sbjct: 153 RFEKREHVLKALDKDYKTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLA 212
Query: 167 GQGAKSKKQAEMSAAKVA 184
G KSKK A+ +AA+ A
Sbjct: 213 GGSGKSKKDAQQAAAEKA 230
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
YK QLQ TQ + P+Y +R EGP H F V ++GQ + K+A+ A
Sbjct: 168 YKTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGS-GKSKKDAQQAA 226
Query: 103 AKVALMSLSLDKFQQD 118
A+ AL ++ D + D
Sbjct: 227 AEKALQIIAADSWSLD 242
>sp|Q67PF5|RNC_SYMTH Ribonuclease 3 OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=rnc PE=3 SV=1
Length = 235
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
YK QLQ Q++ P Y EGP H RF+ V +G+ + + KEAE EA
Sbjct: 165 YKTQLQEQLQRQGAAAPQYRLLVEEGPAHLRRFQVGVYFEGRLLGT-GWGRNKKEAEQEA 223
Query: 103 AKVALM 108
A+ ALM
Sbjct: 224 ARQALM 229
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 123 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
YK LQE Q++ A P Y + G +H F V G + ++KK+AE AA
Sbjct: 165 YKTQLQEQLQRQGAAAPQYRLLVEEGPAHLRRFQVGVYFEGRLLGTGWGRNKKEAEQEAA 224
Query: 182 KVAYM 186
+ A M
Sbjct: 225 RQALM 229
>sp|Q1D5X9|RNC_MYXXD Ribonuclease 3 OS=Myxococcus xanthus (strain DK 1622) GN=rnc PE=3
SV=1
Length = 260
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 123 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
YK +LQE+A + P Y +SG H+ F + +G F+ +SKK+AE SAA
Sbjct: 173 YKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAA 232
Query: 182 KVAYMRLKE 190
+ +L+E
Sbjct: 233 QATLEKLRE 241
>sp|Q03963|E2AK2_MOUSE Interferon-induced, double-stranded RNA-activated protein kinase
OS=Mus musculus GN=Eif2ak2 PE=1 SV=2
Length = 515
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 22/173 (12%)
Query: 39 DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA 98
D Y ++L Y Q + + GPPH RF +V ID + FP K
Sbjct: 4 DTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKE------FPEAKGR 57
Query: 99 EHEAAKVALMSLSLDKFQQDDSV--------------LYKNVLQELAQKEAYALPVYNTK 144
+ A+ A L++D ++ V Y ++ AQK+ ++ Y
Sbjct: 58 SKQEARNAAAKLAVDILDNENKVDCHTSASEQGLFVGNYIGLVNSFAQKKKLSVN-YEQC 116
Query: 145 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQG 196
+ F+ ++G ++ +K++A+ AAK AY + LK P + G
Sbjct: 117 EPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAG 169
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 178
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 179 SAAKVAYMRL 188
SAA+ A +L
Sbjct: 217 SAAQFAINKL 226
>sp|A8F397|RNC_THELT Ribonuclease 3 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM
14385 / TMO) GN=rnc PE=3 SV=1
Length = 238
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 44 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
YK LQ TQ + LP Y E GP H +F ++ + G+ + P++KEAE EA
Sbjct: 169 YKTSLQEITQARYRKLPEYVLVNEKGPSHMKKFTVELRLSGKLIAVGEG-PSIKEAEKEA 227
Query: 103 AKVALMSLSLD 113
A+ A+ L D
Sbjct: 228 ARRAIEKLKGD 238
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
YK LQE+ Q LP Y + G SH F + + G++ + S K+AE AA
Sbjct: 169 YKTSLQEITQARYRKLPEYVLVNEKGPSHMKKFTVELRLSGKLIAVGEGPSIKEAEKEAA 228
Query: 182 KVAYMRLK 189
+ A +LK
Sbjct: 229 RRAIEKLK 236
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 123 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
+K+ LQEL Q++ + Y+ ++ G +H FVS V + G+ KSKK+AE AA
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAA 233
Query: 182 KVAYMRLK 189
++A +LK
Sbjct: 234 QMALQKLK 241
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 44 YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
+K+QLQ Q+ + + YS E +GP H F +V+++GQ + KEAE A
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQEL-GIGVGKSKKEAEQHA 232
Query: 103 AKVALMSL 110
A++AL L
Sbjct: 233 AQMALQKL 240
>sp|B7GGE9|RNC_ANOFW Ribonuclease 3 OS=Anoxybacillus flavithermus (strain DSM 21510 /
WK1) GN=rnc PE=3 SV=1
Length = 238
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 123 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
YK+ LQE Q++ + Y Q G +H FVS V + GE +SKK+AE AA
Sbjct: 166 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAA 225
Query: 182 KVAYMRLKE 190
++A +LK+
Sbjct: 226 QMALAKLKQ 234
>sp|C4K1R3|RNC_RICPU Ribonuclease 3 OS=Rickettsia peacockii (strain Rustic) GN=rnc PE=3
SV=1
Length = 227
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 124 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
K LQE AQ + LP+Y K+ G SHA TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHASTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 183 VAYMRLK 189
RLK
Sbjct: 219 SLLHRLK 225
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 178
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 179 SAAKVAYMRL 188
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 178
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 179 SAAKVAYMRL 188
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 178
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 179 SAAKVAYMRL 188
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.124 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,869,461
Number of Sequences: 539616
Number of extensions: 4853085
Number of successful extensions: 11717
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 306
Number of HSP's that attempted gapping in prelim test: 11204
Number of HSP's gapped (non-prelim): 711
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)