Query 018603
Match_columns 353
No_of_seqs 257 out of 1897
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qu6_A Protein kinase PKR; dsR 100.0 6.6E-32 2.2E-36 242.1 14.5 150 40-192 11-174 (179)
2 2yt4_A Protein DGCR8; DSRBD, R 99.9 1.6E-27 5.3E-32 222.2 16.2 146 40-192 20-200 (232)
3 2l3j_A Double-stranded RNA-spe 99.9 2.1E-24 7.2E-29 201.4 17.6 141 41-191 3-226 (236)
4 3adg_A F21M12.9 protein; HYL1, 99.8 1.1E-19 3.8E-24 140.1 10.1 70 120-189 2-72 (73)
5 3adj_A F21M12.9 protein; HYL1, 99.8 1.1E-19 3.8E-24 141.3 9.5 71 120-190 3-74 (76)
6 1di2_A XLRBPA, double stranded 99.8 2.7E-19 9.1E-24 136.5 8.8 66 123-189 2-68 (69)
7 3adl_A RISC-loading complex su 99.8 4.8E-19 1.7E-23 141.8 9.7 74 118-192 12-86 (88)
8 2cpn_A TAR RNA-binding protein 99.8 6.8E-19 2.3E-23 141.1 10.3 73 118-191 13-86 (89)
9 1uhz_A Staufen (RNA binding pr 99.8 1.1E-18 3.8E-23 139.9 9.9 72 119-191 4-76 (89)
10 2khx_A Ribonuclease 3; drosha, 99.8 5.2E-19 1.8E-23 140.7 7.0 71 121-191 1-77 (85)
11 2dix_A Interferon-inducible do 99.8 2.3E-18 7.7E-23 136.6 9.3 72 119-192 6-78 (84)
12 1ekz_A DSRBDIII, maternal effe 99.8 4.9E-19 1.7E-23 137.5 5.3 70 119-190 5-75 (76)
13 1x49_A Interferon-induced, dou 99.7 2.5E-18 8.6E-23 140.0 9.1 74 119-193 12-86 (97)
14 2l2n_A Hyponastic leave 1; DSR 99.7 2.4E-18 8.1E-23 141.5 8.5 76 117-192 13-89 (103)
15 1x48_A Interferon-induced, dou 99.7 4.6E-18 1.6E-22 136.0 9.7 72 120-193 5-77 (88)
16 3llh_A RISC-loading complex su 99.7 3.4E-18 1.2E-22 137.2 8.8 74 117-192 10-84 (90)
17 1whq_A RNA helicase A; double- 99.7 2.8E-18 9.5E-23 140.2 6.2 71 120-191 5-76 (99)
18 2b7t_A Double-stranded RNA-spe 99.7 6.3E-18 2.2E-22 130.3 7.8 68 120-190 3-71 (73)
19 1uil_A Double-stranded RNA-bin 99.7 1.4E-17 4.7E-22 139.2 9.4 72 120-192 25-101 (113)
20 1t4n_A Ribonuclease III; DSRBD 99.7 7.3E-18 2.5E-22 136.4 5.6 69 120-189 5-74 (94)
21 3adg_A F21M12.9 protein; HYL1, 99.7 5.2E-17 1.8E-21 125.1 9.7 70 41-111 2-72 (73)
22 2dmy_A Spermatid perinuclear R 99.7 4.8E-17 1.6E-21 132.3 10.0 71 118-191 13-84 (97)
23 1x47_A DGCR8 protein; structur 99.7 7.7E-17 2.6E-21 131.4 11.1 72 119-192 14-86 (98)
24 2l33_A Interleukin enhancer-bi 99.7 6.1E-17 2.1E-21 130.4 7.5 70 120-192 13-83 (91)
25 3adj_A F21M12.9 protein; HYL1, 99.7 1.3E-16 4.4E-21 124.0 8.4 70 42-112 4-74 (76)
26 1t4o_A Ribonuclease III; RNT1P 99.7 4.6E-17 1.6E-21 136.3 6.1 69 120-189 7-76 (117)
27 1qu6_A Protein kinase PKR; dsR 99.7 6.9E-17 2.3E-21 144.4 7.5 109 120-230 12-121 (179)
28 2ljh_A Double-stranded RNA-spe 99.7 1.4E-16 4.8E-21 133.2 8.8 69 119-193 35-104 (114)
29 2nug_A Ribonuclease III, RNAse 99.7 1.7E-17 5.6E-22 152.7 3.2 136 45-190 77-219 (221)
30 1whn_A Hypothetical protein ri 99.7 2E-16 6.7E-21 134.9 9.2 71 119-191 24-95 (128)
31 1di2_A XLRBPA, double stranded 99.6 3.4E-16 1.2E-20 119.2 7.7 67 43-111 1-68 (69)
32 2l2n_A Hyponastic leave 1; DSR 99.6 3.2E-16 1.1E-20 128.8 7.9 82 32-114 7-89 (103)
33 3adl_A RISC-loading complex su 99.6 6.4E-16 2.2E-20 123.6 9.4 73 39-113 12-85 (88)
34 1o0w_A Ribonuclease III, RNAse 99.6 1.6E-16 5.4E-21 149.2 6.7 144 45-191 103-250 (252)
35 2cpn_A TAR RNA-binding protein 99.6 6.1E-16 2.1E-20 123.9 9.2 73 39-113 13-86 (89)
36 1ekz_A DSRBDIII, maternal effe 99.6 3.8E-16 1.3E-20 121.2 7.2 70 40-112 5-75 (76)
37 1uhz_A Staufen (RNA binding pr 99.6 8.3E-16 2.8E-20 123.2 9.2 71 41-113 5-76 (89)
38 2dix_A Interferon-inducible do 99.6 1.6E-15 5.6E-20 120.1 9.8 71 40-113 6-77 (84)
39 3llh_A RISC-loading complex su 99.6 8.9E-16 3.1E-20 123.1 8.3 73 39-114 11-84 (90)
40 2khx_A Ribonuclease 3; drosha, 99.6 4.4E-16 1.5E-20 123.8 6.1 70 42-112 1-76 (85)
41 2b7v_A Double-stranded RNA-spe 99.6 1E-15 3.5E-20 117.2 7.9 65 120-190 3-68 (71)
42 1x49_A Interferon-induced, dou 99.6 1.8E-15 6.2E-20 123.0 7.0 72 40-113 12-84 (97)
43 3n3w_A Ribonuclease III; nucle 99.6 5.9E-17 2E-21 152.0 -2.2 143 45-190 101-247 (248)
44 1whq_A RNA helicase A; double- 99.6 1.9E-15 6.5E-20 123.4 6.4 72 41-114 5-77 (99)
45 1x48_A Interferon-induced, dou 99.6 4.7E-15 1.6E-19 118.5 8.0 71 41-114 5-76 (88)
46 3p1x_A Interleukin enhancer-bi 99.6 7.7E-15 2.7E-19 113.8 8.9 69 119-193 5-74 (75)
47 2b7t_A Double-stranded RNA-spe 99.6 4.6E-15 1.6E-19 114.2 7.4 69 40-112 2-71 (73)
48 1uil_A Double-stranded RNA-bin 99.5 1.1E-14 3.7E-19 121.6 8.1 72 41-114 25-101 (113)
49 1t4n_A Ribonuclease III; DSRBD 99.5 2.8E-15 9.7E-20 121.2 4.2 70 40-111 4-74 (94)
50 2a11_A Ribonuclease III, RNAse 99.5 1.9E-16 6.6E-21 147.4 -3.1 145 45-192 83-233 (242)
51 1x47_A DGCR8 protein; structur 99.5 2.4E-14 8.3E-19 116.6 8.7 71 40-113 14-85 (98)
52 2dmy_A Spermatid perinuclear R 99.5 2.2E-14 7.4E-19 116.6 7.8 70 39-112 13-83 (97)
53 1o0w_A Ribonuclease III, RNAse 99.5 3.3E-14 1.1E-18 133.3 9.2 101 10-112 147-249 (252)
54 1t4o_A Ribonuclease III; RNT1P 99.5 1.6E-14 5.6E-19 120.9 5.7 70 40-111 6-76 (117)
55 1whn_A Hypothetical protein ri 99.5 5.1E-14 1.8E-18 120.0 8.9 70 40-112 24-94 (128)
56 2yt4_A Protein DGCR8; DSRBD, R 99.5 5.8E-14 2E-18 130.6 10.0 71 119-191 20-91 (232)
57 2nug_A Ribonuclease III, RNAse 99.5 3.1E-14 1E-18 130.9 8.0 100 10-112 115-219 (221)
58 2l33_A Interleukin enhancer-bi 99.5 6.6E-14 2.2E-18 112.6 6.4 70 41-114 13-83 (91)
59 2ljh_A Double-stranded RNA-spe 99.4 1.1E-13 3.7E-18 115.7 7.1 69 38-113 33-102 (114)
60 3n3w_A Ribonuclease III; nucle 99.4 1.3E-14 4.3E-19 136.2 1.6 101 10-112 145-247 (248)
61 2a11_A Ribonuclease III, RNAse 99.4 2.1E-14 7.2E-19 133.7 1.3 102 10-113 130-232 (242)
62 2b7v_A Double-stranded RNA-spe 99.4 5.6E-13 1.9E-17 101.9 7.4 66 40-112 2-68 (71)
63 3rv0_A K. polysporus DCR1; RNA 99.3 1.8E-14 6.3E-19 141.0 -5.9 140 45-191 170-321 (341)
64 3p1x_A Interleukin enhancer-bi 99.3 4.4E-12 1.5E-16 98.2 7.8 68 40-114 5-73 (75)
65 2l3j_A Double-stranded RNA-spe 99.2 1.3E-11 4.3E-16 115.0 8.7 69 121-192 4-73 (236)
66 3rv0_A K. polysporus DCR1; RNA 99.0 6.7E-11 2.3E-15 115.8 1.9 96 10-112 215-320 (341)
67 3c4b_A Endoribonuclease dicer; 98.9 9.3E-11 3.2E-15 110.2 0.3 107 80-190 155-263 (265)
68 3c4b_A Endoribonuclease dicer; 98.7 1.4E-08 4.8E-13 95.3 5.3 94 10-112 167-263 (265)
69 2kou_A Dicer-like protein 4; A 95.5 0.031 1E-06 45.2 6.7 69 121-192 4-82 (102)
70 2qvw_A GLP_546_48378_50642; di 92.7 0.013 4.3E-07 62.8 -1.6 110 45-191 375-498 (756)
71 2kou_A Dicer-like protein 4; A 90.1 0.53 1.8E-05 37.9 5.8 72 42-116 4-84 (102)
72 3htx_A HEN1; HEN1, small RNA m 90.0 0.32 1.1E-05 52.9 5.7 69 121-193 17-98 (950)
73 2db2_A KIAA0890 protein; DSRM 80.1 2.1 7.2E-05 35.2 4.6 71 119-192 15-91 (119)
74 3htx_A HEN1; HEN1, small RNA m 78.3 1.9 6.4E-05 47.0 4.9 67 42-113 17-96 (950)
75 2qvw_A GLP_546_48378_50642; di 57.9 6.8 0.00023 41.8 3.9 47 10-57 414-463 (756)
76 1ais_A TBP, protein (tata-bind 51.4 38 0.0013 29.6 7.1 107 73-190 53-180 (182)
77 2z8u_A Tata-box-binding protei 48.3 73 0.0025 28.0 8.5 107 72-189 56-183 (188)
78 1mp9_A Tata-binding protein; t 39.3 94 0.0032 27.5 7.8 109 72-191 56-185 (198)
79 3eik_A Tata-box-binding protei 35.1 1E+02 0.0034 27.9 7.3 107 73-190 87-214 (218)
No 1
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.97 E-value=6.6e-32 Score=242.13 Aligned_cols=150 Identities=27% Similarity=0.402 Sum_probs=134.9
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccCC--
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ-- 116 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~~-- 116 (353)
...|||+.||||||++++. |.|.+ .+.||+|.+.|++.|.|+|..++.|. |.+||+|+|.||+.||+.|......
T Consensus 11 ~~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~sKK~Aeq~AA~~al~~L~~~~~~~~ 88 (179)
T 1qu6_A 11 SAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGE-GRSKKEAKNAAAKLAVEILNKEKKAVS 88 (179)
T ss_dssp SSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEE-CCSSHHHHHHHHHHHHHHHHSCCSCCS
T ss_pred CCCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecC-CCCHHHHHHHHHHHHHHHHhcccccCC
Confidence 4579999999999999987 89998 47899999999999999999898888 5999999999999999999864321
Q ss_pred -----------CCcchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHH
Q 018603 117 -----------QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 185 (353)
Q Consensus 117 -----------~d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL 185 (353)
.....||+++||||||++++.+ .|++.+.||+|.+.|+++|.|+|+.|+.|.|+|||+||+.||+.||
T Consensus 89 p~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al 167 (179)
T 1qu6_A 89 PLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAY 167 (179)
T ss_dssp CSSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHH
T ss_pred CccCCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHH
Confidence 0135799999999999999986 9999889999999999999999999889999999999999999999
Q ss_pred HHhhCCC
Q 018603 186 MRLKEPN 192 (353)
Q Consensus 186 ~~L~~~~ 192 (353)
+.|....
T Consensus 168 ~~L~~~~ 174 (179)
T 1qu6_A 168 LQILSEE 174 (179)
T ss_dssp HHHHHCC
T ss_pred HHHhccc
Confidence 9997654
No 2
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=222.22 Aligned_cols=146 Identities=23% Similarity=0.218 Sum_probs=121.7
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF--- 115 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~--- 115 (353)
..+|||+.||||||++++..|.|.+ ...||+ +.|++.|.|+|..++.|. |.|||.|++.||+.||..|.....
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~-G~SKK~Aeq~AA~~aL~~L~~~~~~~~ 96 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGT-ASSKKLAKNKAARATLEILIPDFVKQT 96 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHSTTTTTC-
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecC-CCCHHHHHHHHHHHHHHHHHhhccccC
Confidence 5689999999999999999999998 467887 899999999999999998 599999999999999999976421
Q ss_pred -C-----------------CC----------cchhHHHHHHHHHHHhcCCCCceE--E-eccCCCCCCeEEEEEEECCEE
Q 018603 116 -Q-----------------QD----------DSVLYKNVLQELAQKEAYALPVYN--T-KQSGESHAPTFVSTVEVGGEV 164 (353)
Q Consensus 116 -~-----------------~d----------~~~n~ks~LqE~~qk~~~~~P~Y~--~-~~~Gp~H~~~F~~~V~I~G~~ 164 (353)
. .+ ...|||+.||| ||++++.+|.|+ + .+.||+|.+.|+|.|. ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~ 172 (232)
T 2yt4_A 97 SEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG---KH 172 (232)
T ss_dssp -------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET---TE
T ss_pred CccccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE---EE
Confidence 0 00 13589999999 999999999999 4 5789999999999886 44
Q ss_pred eeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603 165 FSGQGAKSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 165 ~~~G~G~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
++.|.|+|||+|||.||+.||+.|....
T Consensus 173 ~~~G~G~sKK~Aeq~AA~~aL~~L~~~~ 200 (232)
T 2yt4_A 173 TVRGWCKNKRVGKQLASQKILQLLHPHV 200 (232)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSTTC
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence 5679999999999999999999998654
No 3
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.92 E-value=2.1e-24 Score=201.44 Aligned_cols=141 Identities=33% Similarity=0.375 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc-----
Q 018603 41 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK----- 114 (353)
Q Consensus 41 ~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~----- 114 (353)
..+||+.|++|++.. ..|.|.+ .+.||.|.+.|++.|.|+|..+ .|. |.|||.|+|.||+.||+.|....
T Consensus 3 ~~~~K~~l~~l~e~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~al~~l~~~~~~~~~ 78 (236)
T 2l3j_A 3 PVLPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGS-GPTKKKAKLHAAEKALRSFVQFPNASEA 78 (236)
T ss_dssp CCCTHHHHHHHHHHC--SSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEE-ESHHHHHHHHHHHHHHHHHTTCSSCSCC
T ss_pred CCCCcCHHHHHhhcC--CCceEEEEeccCCCCCCeEEEEEEECCEEE-EEe-cCChHHHHHHHHHHHHHHHHhccccccc
Confidence 368899999999863 4689998 5689999999999999999886 677 59999999999999999886411
Q ss_pred -------------CC---------------C------------------------------------------------C
Q 018603 115 -------------FQ---------------Q------------------------------------------------D 118 (353)
Q Consensus 115 -------------~~---------------~------------------------------------------------d 118 (353)
+. . .
T Consensus 79 ~~amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~ 158 (236)
T 2l3j_A 79 HLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPP 158 (236)
T ss_dssp CCSCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCC
T ss_pred hhhhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCC
Confidence 00 0 0
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 191 (353)
...|||++|||| +..|.|++ .+.||+|.++|+|+|.|+|+.+ .|.|+|||+|||.||+.||+.|...
T Consensus 159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence 136999999999 46789997 6789999999999999999987 7999999999999999999999754
No 4
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.81 E-value=1.1e-19 Score=140.11 Aligned_cols=70 Identities=40% Similarity=0.475 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhh
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLK 189 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G-~SKK~AKq~AA~~AL~~L~ 189 (353)
..|||+.||||||++++..|.|++...||+|.+.|+|.|.|+|..++.|.| +|||+|||.||+.||+.|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999998556999999999999999999999999 9999999999999999985
No 5
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.80 E-value=1.1e-19 Score=141.34 Aligned_cols=71 Identities=39% Similarity=0.630 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~ 190 (353)
..|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|..
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999997 67999999999999999999999999999999999999999999975
No 6
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.79 E-value=2.7e-19 Score=136.47 Aligned_cols=66 Identities=30% Similarity=0.368 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhh
Q 018603 123 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 189 (353)
Q Consensus 123 ~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~ 189 (353)
||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|.
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999997 67899999999999999998 8999999999999999999999986
No 7
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.78 E-value=4.8e-19 Score=141.77 Aligned_cols=74 Identities=27% Similarity=0.314 Sum_probs=67.7
Q ss_pred CcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603 118 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 118 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
....|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...+
T Consensus 12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p 86 (88)
T 3adl_A 12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVP 86 (88)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccC
Confidence 34679999999999999999999997 67899999999999999998 8999999999999999999999998643
No 8
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.78 E-value=6.8e-19 Score=141.14 Aligned_cols=73 Identities=29% Similarity=0.367 Sum_probs=68.2
Q ss_pred CcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603 118 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 118 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 191 (353)
....|||++||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus 13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999997 67899999999999999998 899999999999999999999999754
No 9
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.77 E-value=1.1e-18 Score=139.92 Aligned_cols=72 Identities=25% Similarity=0.244 Sum_probs=67.0
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 191 (353)
...|||++||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (89)
T 1uhz_A 4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhcc
Confidence 3579999999999999999999997 67899999999999999997 889999999999999999999999754
No 10
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-19 Score=140.70 Aligned_cols=71 Identities=32% Similarity=0.339 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHH-----hcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603 121 VLYKNVLQELAQK-----EAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 121 ~n~ks~LqE~~qk-----~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 191 (353)
+|||+.||||||+ +++..|.|++ .+.||+|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 4899999999998 4677899998 678999999999999999999999999999999999999999988654
No 11
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.75 E-value=2.3e-18 Score=136.57 Aligned_cols=72 Identities=32% Similarity=0.372 Sum_probs=66.1
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
...|||+.||||||+++ ..|.|++ .+.||+|.+.|+|.|.|+| .++.|.|+|||+|||.||+.||+.|....
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 78 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANA 78 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence 45799999999999998 6899997 6789999999999999999 88999999999999999999999997543
No 12
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.75 E-value=4.9e-19 Score=137.52 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=65.7
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~ 190 (353)
...|||+.||||||++++. |.|++ .+.||+|.+.|+|.|.|+| .++.|.|+|||+|||.||+.||+.|..
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999 99997 6789999999999999999 889999999999999999999999864
No 13
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.75 E-value=2.5e-18 Score=139.96 Aligned_cols=74 Identities=27% Similarity=0.331 Sum_probs=68.5
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 193 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~ 193 (353)
...|||++||||||++++. |.|++ .+.||+|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|.....
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 86 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK 86 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence 5689999999999999997 79996 67899999999999999999999999999999999999999999986543
No 14
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=2.4e-18 Score=141.53 Aligned_cols=76 Identities=36% Similarity=0.449 Sum_probs=66.2
Q ss_pred CCcchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhhCCC
Q 018603 117 QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 117 ~d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G-~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
.....|||+.||||||++++..|.|++...||+|.+.|++.|.|+|+.++.|.| +|||+|||.||+.||+.|....
T Consensus 13 ~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 13 VSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp ------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 345789999999999999999999998656999999999999999999999999 9999999999999999998654
No 15
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.74 E-value=4.6e-18 Score=136.01 Aligned_cols=72 Identities=26% Similarity=0.446 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHHHhcCCCCceEEeccCCCCCC-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 193 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~-~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~ 193 (353)
..|||++||||||++++.+ .|+ .+.||+|.+ +|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|....+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 77 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPP 77 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4699999999999999975 999 889999999 79999999999999999999999999999999999987643
No 16
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=137.20 Aligned_cols=74 Identities=32% Similarity=0.403 Sum_probs=59.0
Q ss_pred CCcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603 117 QDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 117 ~d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
.+..+|||+.||||||+++. .|.|++ .+.||+|.+.|++.|.|+|+ ++.|.|+|||+|||.||+.||+.|....
T Consensus 10 ~~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 10 ANPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred cccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence 34578999999999999875 799997 78999999999999999998 6789999999999999999999998653
No 17
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.73 E-value=2.8e-18 Score=140.23 Aligned_cols=71 Identities=25% Similarity=0.259 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECC-EEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G-~~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 191 (353)
..|||++||||||++ +..|.|++.+.||+|.++|+|.|.|+| +.++.|.|+|||+|||+||+.||+.|...
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 469999999999999 888999998889999999999999999 68899999999999999999999999754
No 18
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.73 E-value=6.3e-18 Score=130.34 Aligned_cols=68 Identities=38% Similarity=0.487 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~ 190 (353)
..|||+.||||||+ +..|.|++ .+.||+|.+.|++.|.|+|..+ .|.|+|||+|||+||+.||+.|..
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 36899999999995 77899997 6789999999999999999987 899999999999999999999975
No 19
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.72 E-value=1.4e-17 Score=139.18 Aligned_cols=72 Identities=25% Similarity=0.281 Sum_probs=67.2
Q ss_pred chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV-----GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I-----~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
..|||++||||||++++ .|.|++.+.||+|.+.|+|.|.| +|+.++.|.|+|||+|||.||+.||+.|....
T Consensus 25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~ 101 (113)
T 1uil_A 25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLG 101 (113)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999999 89999888999999999999999 68889999999999999999999999998653
No 20
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.70 E-value=7.3e-18 Score=136.40 Aligned_cols=69 Identities=22% Similarity=0.146 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHhh
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLK 189 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~-~~~~G~G~SKK~AKq~AA~~AL~~L~ 189 (353)
..|||+.||||||+++ ..|.|++...||+|++.|++.|.|+|. .++.|.|+|||+|+|.||+.||..|.
T Consensus 5 ~~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp CHHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999974 579999966699999999999999999 89999999999999999999998775
No 21
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.70 E-value=5.2e-17 Score=125.10 Aligned_cols=70 Identities=44% Similarity=0.675 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeeccccc-CCcchhHHHHHHHHHHHhh
Q 018603 41 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFF-PTLKEAEHEAAKVALMSLS 111 (353)
Q Consensus 41 ~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg-~SKK~Akq~AAk~AL~~L~ 111 (353)
..|||+.||||||++++.+|.|.+...||+|.+.|++.|.|+|..++.|. | .|||.|++.||+.||..|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP-GFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCS-CBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeee-ccCCHHHHHHHHHHHHHHHhh
Confidence 37999999999999999999999966699999999999999999999888 6 8999999999999999885
No 22
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.70 E-value=4.8e-17 Score=132.32 Aligned_cols=71 Identities=30% Similarity=0.395 Sum_probs=64.9
Q ss_pred CcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603 118 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 118 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 191 (353)
....|||+.||||||++ ..|.|++ .+.||+|.+.|++.|.|+|+.+ .|.|+|||+|||.||+.||+.|...
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~ 84 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP 84 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999996 6789997 5789999999999999999998 8999999999999999999999653
No 23
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.70 E-value=7.7e-17 Score=131.35 Aligned_cols=72 Identities=26% Similarity=0.264 Sum_probs=67.0
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
+..|||+.||||||++++..|.|++ .+.||+ +.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|....
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 86 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDF 86 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhh
Confidence 6789999999999999999999997 568987 99999999999999999999999999999999999998553
No 24
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.68 E-value=6.1e-17 Score=130.40 Aligned_cols=70 Identities=33% Similarity=0.344 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
..++|+.||||||+++ .|.|++ .+.||+|.++|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|....
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~ 83 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT 83 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcC
Confidence 3578999999999998 789997 6789999999999999999987 89999999999999999999998654
No 25
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.67 E-value=1.3e-16 Score=123.98 Aligned_cols=70 Identities=37% Similarity=0.608 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603 42 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 42 ~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
.|||+.||||||++++.+|.|.+ .+.||+|.+.|++.|.|+|..++.|. |.|||.|+|.||+.||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAA-TRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCC-BSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEec-cCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999998 57899999999999999999999998 599999999999999999864
No 26
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.67 E-value=4.6e-17 Score=136.29 Aligned_cols=69 Identities=22% Similarity=0.146 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHhh
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLK 189 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~-~~~~G~G~SKK~AKq~AA~~AL~~L~ 189 (353)
..|||+.||||||+.+ ..|.|++...||+|.+.|++.|.|+|. .++.|.|.|||+|+|.||+.||..|.
T Consensus 7 ~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999954 679999855599999999999999999 89999999999999999999998764
No 27
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.67 E-value=6.9e-17 Score=144.45 Aligned_cols=109 Identities=22% Similarity=0.278 Sum_probs=86.0
Q ss_pred chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPA 198 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~~~~~~ 198 (353)
..|||++||||||++++. |.|++ .+.||+|.+.|++.|.|+|+.++.|.|+|||+|||+||+.||+.|........+.
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~ 90 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPL 90 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSCCSCS
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 478999999999999997 89997 6789999999999999999989999999999999999999999998765432222
Q ss_pred ccCCCccccccccccccccccccccccccCCC
Q 018603 199 LVSPDIQAQADYSSSSLQSNVTADLHHNIQTA 230 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~~~q~~~~~~ 230 (353)
..... ...+++...|..+.|+++.|++..+.
T Consensus 91 ~~~~~-~~~e~~~~~n~~~~L~E~~qk~~~~~ 121 (179)
T 1qu6_A 91 LLTTT-NSSEGLSMGNYIGLINRIAQKKRLTV 121 (179)
T ss_dssp SCCCS-CSSCCCCCCCCHHHHHHHHHHSCCEE
T ss_pred cCCCC-CcccccCCCCHHHHHHHHHHhcCCcc
Confidence 11100 01123344467889999998876643
No 28
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.4e-16 Score=133.24 Aligned_cols=69 Identities=30% Similarity=0.385 Sum_probs=63.6
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 193 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~ 193 (353)
...|||++||||||+ |.|++ .+.||+|+++|+++|.|+|+.+ .|.|+|||+|||+||+.||+.|.....
T Consensus 35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~ 104 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKD 104 (114)
T ss_dssp CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCC
Confidence 468999999999984 89997 6789999999999999999999 899999999999999999999987654
No 29
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.66 E-value=1.7e-17 Score=152.72 Aligned_cols=136 Identities=23% Similarity=0.228 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHH--HHHHHHHHhhcccC----CCC
Q 018603 45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE--AAKVALMSLSLDKF----QQD 118 (353)
Q Consensus 45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~--AAk~AL~~L~~~~~----~~d 118 (353)
...|.++|.+.++. .|.....|... -.+.++.|++..||.+.+.+... |.+.+...+.+... ...
T Consensus 77 ~~~la~~a~~l~l~--~~l~~~~~~~~-------~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~~~~~~~~~~~ 147 (221)
T 2nug_A 77 EEFFNLLAQKLELH--KFIRIKRGKIN-------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGR 147 (221)
T ss_dssp HHHHHHHHHTTTGG--GTCBSCTTCCC-------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcChH--HhhccCCCccc-------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhhhccc
Confidence 46789999998865 44443333322 34567788888888888876655 55554444433211 122
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~ 190 (353)
...|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|+ ++.|.|+|||+|||.||+.||+.|..
T Consensus 148 ~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 148 VKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred cccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhhc
Confidence 3579999999999999999999997 67899999999999999999 99999999999999999999999963
No 30
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.66 E-value=2e-16 Score=134.91 Aligned_cols=71 Identities=32% Similarity=0.323 Sum_probs=65.7
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhhCC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G-~SKK~AKq~AA~~AL~~L~~~ 191 (353)
...|||+.||||||++++..|.|++... +|.+.|+|.|.|+|+.|+.|.| +|||+|||+||+.||+.|...
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 4579999999999999999999998655 8999999999999999999999 999999999999999999743
No 31
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.64 E-value=3.4e-16 Score=119.18 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhh
Q 018603 43 LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLS 111 (353)
Q Consensus 43 npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~ 111 (353)
.||+.||||||++++..|.|.+ .+.||+|.+.|++.|.|+|. ++.|. |.|||.|++.||+.||..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~-G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGS-GTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEee-cCCHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999998 57899999999999999997 88888 59999999999999999885
No 32
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=3.2e-16 Score=128.83 Aligned_cols=82 Identities=39% Similarity=0.547 Sum_probs=65.3
Q ss_pred cccccccccCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeeccccc-CCcchhHHHHHHHHHHHh
Q 018603 32 NDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFF-PTLKEAEHEAAKVALMSL 110 (353)
Q Consensus 32 ~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg-~SKK~Akq~AAk~AL~~L 110 (353)
.|........+|||+.||||||++++.+|.|.+...||+|.+.|++.|.|+|..++.|. | .|||.|+|.||+.||..|
T Consensus 7 ~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~-G~~SKK~Aeq~AA~~AL~~L 85 (103)
T 2l2n_A 7 TDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP-GFFNRKAAEQSAAEVALREL 85 (103)
T ss_dssp ------------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCS-CBSSHHHHHHHHHHHHHHHH
T ss_pred hhhccccCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEee-cCCCHHHHHHHHHHHHHHHH
Confidence 34444456789999999999999999999999966699999999999999999999888 6 899999999999999999
Q ss_pred hccc
Q 018603 111 SLDK 114 (353)
Q Consensus 111 ~~~~ 114 (353)
....
T Consensus 86 ~~~~ 89 (103)
T 2l2n_A 86 AKSS 89 (103)
T ss_dssp HHHC
T ss_pred hccc
Confidence 8643
No 33
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.64 E-value=6.4e-16 Score=123.58 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=66.4
Q ss_pred ccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603 39 DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 113 (353)
Q Consensus 39 ~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~ 113 (353)
....|||+.||||||++++.+|.|++ .+.||+|.+.|++.|.|+|. ++.|. |.|||+|+|.||+.||..|...
T Consensus 12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~-G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGS-GTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEe-eCCHHHHHHHHHHHHHHHHHcc
Confidence 35689999999999999999999998 57899999999999999997 88888 5999999999999999999753
No 34
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.64 E-value=1.6e-16 Score=149.18 Aligned_cols=144 Identities=22% Similarity=0.245 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---CCCcch
Q 018603 45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSV 121 (353)
Q Consensus 45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---~~d~~~ 121 (353)
...|.++|.+.++. .|.....|..... ....-++.++.|++..||.+.+.+...|.+++...+.+... ......
T Consensus 103 ~~~la~~a~~lgL~--~~l~~~~~e~~~~-~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~~~~ 179 (252)
T 1o0w_A 103 EEVLAMVSRKMNLG--KFLFLGKGEEKTG-GRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLF 179 (252)
T ss_dssp HHHHHHHHHHTTHH--HHCBCCHHHHHTT-GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHcCcH--HhhccCchhhhcC-CCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 56788999998865 3443211110000 00112456778999888999998887666555555443321 122357
Q ss_pred hHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603 122 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 122 n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 191 (353)
|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||+.|..+
T Consensus 180 dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 180 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999997 578999999999999999999999999999999999999999999754
No 35
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.64 E-value=6.1e-16 Score=123.93 Aligned_cols=73 Identities=23% Similarity=0.268 Sum_probs=66.7
Q ss_pred ccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603 39 DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 113 (353)
Q Consensus 39 ~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~ 113 (353)
...+|||+.||||||++++.+|.|.+ .+.||+|.+.|++.|.|+|. ++.|. |.+||+|++.||+.||..|...
T Consensus 13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~-G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGS-GTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEee-eCCHHHHHHHHHHHHHHHHHhh
Confidence 34689999999999999999999998 57899999999999999997 88888 5999999999999999998753
No 36
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.63 E-value=3.8e-16 Score=121.16 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=64.7
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
..+|||+.||||||++++. |.|.+ .+.||+|.+.|++.|.|+| .++.|. |.|||.|+|.||+.||..|..
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~-G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGE-GNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEEC-CCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence 4589999999999999999 99998 5789999999999999999 888898 599999999999999998864
No 37
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.63 E-value=8.3e-16 Score=123.16 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603 41 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 113 (353)
Q Consensus 41 ~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~ 113 (353)
.+|||+.||||||++++.+|.|.+ .+.||+|.+.|++.|.|+|. ++.|. |.|||+|+|.||+.||+.|...
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~-G~SKK~Aeq~AA~~AL~~L~~~ 76 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGT-GPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEe-eCCHHHHHHHHHHHHHHHHhcc
Confidence 579999999999999999999998 57899999999999999996 88888 5999999999999999999753
No 38
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.62 E-value=1.6e-15 Score=120.08 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=64.7
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 113 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~ 113 (353)
..+|||+.||||||+++ ..|.|.+ .+.||.|.+.|++.|.|+| .++.|. |.+||+|+|.||+.||..|...
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~-G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGE-GTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEEC-SSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEee-eCCHHHHHHHHHHHHHHHHhcc
Confidence 45899999999999998 5799998 5789999999999999999 888898 5999999999999999999754
No 39
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.62 E-value=8.9e-16 Score=123.08 Aligned_cols=73 Identities=30% Similarity=0.379 Sum_probs=58.0
Q ss_pred ccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603 39 DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 114 (353)
Q Consensus 39 ~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~ 114 (353)
...+|||+.||||||+++. .|.|.+ .+.||+|++.|++.|.|+|. ++.|. |.|||+|||.||+.||..|....
T Consensus 11 ~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~-G~SKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 11 NPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQ-GPSKKAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp --CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHC---
T ss_pred ccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEE-eCCHHHHHHHHHHHHHHHHHhcc
Confidence 4579999999999999985 699998 68899999999999999997 57787 59999999999999999997653
No 40
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=123.75 Aligned_cols=70 Identities=29% Similarity=0.408 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHH-----cCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603 42 HLYKNQLQSYTQK-----KNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 42 ~npKS~LqE~~QK-----~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
+|||+.||||||+ .++..|.|.+ .+.||+|.+.|++.|.|+|..++.|. |.|||+|++.||+.||..|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~-G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEE-ESSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEe-eCCHHHHHHHHHHHHHHHHhH
Confidence 5899999999998 4677899998 57899999999999999999999998 599999999999999998864
No 41
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.61 E-value=1e-15 Score=117.19 Aligned_cols=65 Identities=34% Similarity=0.392 Sum_probs=59.6
Q ss_pred chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603 120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190 (353)
Q Consensus 120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~ 190 (353)
..||++.||||| ..|.|++ .+.||+|.+.|+|.|.|+|+.+ .|.|+|||+|||.||+.||+.|..
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHh
Confidence 579999999994 5789997 6789999999999999999886 799999999999999999999864
No 42
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.58 E-value=1.8e-15 Score=123.03 Aligned_cols=72 Identities=29% Similarity=0.469 Sum_probs=66.4
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 113 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~ 113 (353)
...|||+.||||||++++. |.|++ .+.||+|.+.|++.|.|+|..++.|. |.+||+|+|.||+.||+.|...
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAK-GRSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEE-ESSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEe-eCCHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999997 79997 57899999999999999999999998 5999999999999999999764
No 43
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.58 E-value=5.9e-17 Score=152.03 Aligned_cols=143 Identities=23% Similarity=0.164 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---CCCcch
Q 018603 45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSV 121 (353)
Q Consensus 45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---~~d~~~ 121 (353)
...|.+++.+.++. .|.....|..... ....-.+.++.|++.+||.+.+.+...|.+++...+.+... ......
T Consensus 101 ~~~La~~a~~lgL~--~~l~~~~~e~~~~-g~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~~~~~~~~~~ 177 (248)
T 3n3w_A 101 EKSFAKIANSLNLG--DFILMSVAEENNG-GKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIK 177 (248)
T ss_dssp HHHHHHHHHHTTGG--GTCBCCHHHHHTT-GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHcCcH--HHhhcCchhhhcC-CCCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhhcccccc
Confidence 46789999999865 4443221110000 00112356778999999999999887666666555554432 123468
Q ss_pred hHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603 122 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190 (353)
Q Consensus 122 n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~ 190 (353)
|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||+.|..
T Consensus 178 dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 178 DYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999997 68899999999999999999999999999999999999999999864
No 44
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.57 E-value=1.9e-15 Score=123.37 Aligned_cols=72 Identities=22% Similarity=0.268 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEcc-EeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603 41 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDG-QTYESHQFFPTLKEAEHEAAKVALMSLSLDK 114 (353)
Q Consensus 41 ~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g-~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~ 114 (353)
.+|||+.||||||++ +..|.|.+.+.||.|.+.|++.|.|+| ..++.|. |.|||+|+|.||+.||+.|....
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGN-STNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEE-ESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEec-cCCHHHHHHHHHHHHHHHHHhhC
Confidence 479999999999999 788999997789999999999999999 6888888 59999999999999999997643
No 45
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.57 E-value=4.7e-15 Score=118.49 Aligned_cols=71 Identities=31% Similarity=0.353 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCc-cEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603 41 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHAS-RFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 114 (353)
Q Consensus 41 ~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~-~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~ 114 (353)
.+|||+.||||||++++.+ .|+ ...||+|.+ +|++.|.|+|..++.|. |.|||+|+|.||+.||+.|....
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~~ 76 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGS-GVTKQEAKQLAAKEAYQKLLKSP 76 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEE-ESSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEee-cCCHHHHHHHHHHHHHHHHHhcC
Confidence 4799999999999999975 999 888999999 79999999999999998 59999999999999999997653
No 46
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.57 E-value=7.7e-15 Score=113.78 Aligned_cols=69 Identities=30% Similarity=0.290 Sum_probs=58.6
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 193 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~ 193 (353)
..+||++.|+|++ ..|.|++ .+.||+|.++|++.|.|+|..+ .|.|+|||+|||.||+.||+.|....+
T Consensus 5 ~~K~pl~~L~q~~-----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~~ 74 (75)
T 3p1x_A 5 HGKNPVMELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP 74 (75)
T ss_dssp -CCCHHHHHHHHS-----TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCHHHHHHHcC-----CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccCC
Confidence 3456666666653 4789997 6799999999999999999998 899999999999999999999987653
No 47
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.56 E-value=4.6e-15 Score=114.25 Aligned_cols=69 Identities=33% Similarity=0.364 Sum_probs=61.9
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
...|||+.||||||+ +..|.|.+ .+.||+|++.|++.|.|+|..+ .|. |.|||+|+|.||+.||..|..
T Consensus 2 k~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 2 GPVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGS-GPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp CSSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEE-ESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Eee-cCCHHHHHHHHHHHHHHHHhc
Confidence 357999999999996 56789998 5789999999999999999887 787 599999999999999998874
No 48
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.54 E-value=1.1e-14 Score=121.57 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEE-----ccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603 41 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTI-----DGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 114 (353)
Q Consensus 41 ~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I-----~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~ 114 (353)
.+|||+.||||||++++ .|.|.+...||+|.+.|++.|.| ++..++.|. |.+||.|+|.||+.||..|....
T Consensus 25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~-G~SKK~AEq~AA~~AL~~L~~~~ 101 (113)
T 1uil_A 25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREH-GSNKKLAAQSCALSLVRQLYHLG 101 (113)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECC-CSSHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHhcC
Confidence 36999999999999999 89999878999999999999999 588888888 59999999999999999987653
No 49
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.54 E-value=2.8e-15 Score=121.22 Aligned_cols=70 Identities=16% Similarity=0.016 Sum_probs=62.7
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccE-eeecccccCCcchhHHHHHHHHHHHhh
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQ-TYESHQFFPTLKEAEHEAAKVALMSLS 111 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~-~~~ag~Gg~SKK~Akq~AAk~AL~~L~ 111 (353)
..+|||+.||||+|+.+ ..|.|.+...||+|++.|++.|.|+|. .++.|. |.|||+|+|.||+.||..|.
T Consensus 4 ~~~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~-G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 4 LDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp SCHHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEE-ESSHHHHHHHHHHHHHHCHH
T ss_pred CCCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEE-eCCHHHHHHHHHHHHHHHHH
Confidence 45799999999999975 579999976699999999999999998 899998 59999999999999997654
No 50
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.54 E-value=1.9e-16 Score=147.43 Aligned_cols=145 Identities=22% Similarity=0.199 Sum_probs=38.4
Q ss_pred HHHHHHHHHHc---CCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc---CCCC
Q 018603 45 KNQLQSYTQKK---NLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK---FQQD 118 (353)
Q Consensus 45 KS~LqE~~QK~---gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~---~~~d 118 (353)
...|.++|.+. ++. .|.....|...... ...-++.++.|++..||.+.+.+...|.+.+...+.+.. ...+
T Consensus 83 ~~~la~~a~~l~~~gL~--~~l~~~~~e~~~~~-~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~ 159 (242)
T 2a11_A 83 TQALADVARRLCAEGLG--VHVLLGRGEANTGG-ADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLG 159 (242)
T ss_dssp HHHHHHHHHHHSSSCSG--GGCBCCHHHHHTTG-GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC--
T ss_pred HHHHHHHHHHhhhhChH--HHhhcCchhhhcCC-CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45688999999 765 44432221100000 001244567889988899999887755555554443321 1122
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
...|||+.||||||++++..|.|++...||+|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||+.|....
T Consensus 160 ~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 160 AGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 46799999999999999999999986699999999999999999999999999999999999999999997653
No 51
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.52 E-value=2.4e-14 Score=116.56 Aligned_cols=71 Identities=34% Similarity=0.366 Sum_probs=65.1
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 113 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~ 113 (353)
..+|||+.||||||++++.+|.|.+ .+.||+ +.|++.|.|+|..++.|. |.|||+|+|.||+.||..|...
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGT-ASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHHHHhh
Confidence 5689999999999999999999998 467887 899999999999999998 5999999999999999999754
No 52
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.51 E-value=2.2e-14 Score=116.60 Aligned_cols=70 Identities=29% Similarity=0.351 Sum_probs=63.0
Q ss_pred ccCCCHHHHHHHHHHHcCCCCCeeeee-ecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603 39 DMQHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 39 ~~~~npKS~LqE~~QK~gl~~P~Y~l~-~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
...+|||+.||||||++ ..|.|.+. +.||.|.+.|++.|.|+|..+ .|. |.|||+|+|.||+.||..|..
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EAS-GPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEe-eCCHHHHHHHHHHHHHHHhCC
Confidence 35689999999999996 57899984 689999999999999999988 787 599999999999999999964
No 53
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.50 E-value=3.3e-14 Score=133.33 Aligned_cols=101 Identities=25% Similarity=0.244 Sum_probs=81.9
Q ss_pred hhhhc-chhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeee
Q 018603 10 AVQVN-ARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYE 87 (353)
Q Consensus 10 ~~~~~-~~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ 87 (353)
|+|++ +.+.+..| +.+++.+.++........+|||+.||||||+.++..|.|.+ .+.||.|.+.|++.|.|+|..++
T Consensus 147 Aiyld~g~~~~~~~-i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~ 225 (252)
T 1o0w_A 147 AIYLDQGYEKIKEL-FEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIA 225 (252)
T ss_dssp HHHHHHCHHHHHHH-HHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEE
T ss_pred HHHHcCCHHHHHHH-HHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEE
Confidence 55666 44555554 55667666653333244689999999999999998899998 46899999999999999999999
Q ss_pred cccccCCcchhHHHHHHHHHHHhhc
Q 018603 88 SHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 88 ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
.|. |.|||+||+.||+.||+.|..
T Consensus 226 ~G~-G~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 226 TGK-GRTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp EEE-ESSHHHHHHHHHHHHHHHHC-
T ss_pred EEe-eCCHHHHHHHHHHHHHHHHhh
Confidence 998 599999999999999999864
No 54
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.50 E-value=1.6e-14 Score=120.87 Aligned_cols=70 Identities=16% Similarity=0.016 Sum_probs=62.4
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccE-eeecccccCCcchhHHHHHHHHHHHhh
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQ-TYESHQFFPTLKEAEHEAAKVALMSLS 111 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~-~~~ag~Gg~SKK~Akq~AAk~AL~~L~ 111 (353)
..+|||+.||||||+.+ ..|.|.+...||+|++.|++.|.|+|. .++.|. |.|||+|+|.||+.||..+.
T Consensus 6 ~~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~-G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 6 LDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CCTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEE-ESSHHHHHHHHHHHHHHCHH
T ss_pred CCCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEE-eCCHHHHHHHHHHHHHHHHH
Confidence 45799999999999954 679999865699999999999999998 899998 59999999999999987554
No 55
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.49 E-value=5.1e-14 Score=119.95 Aligned_cols=70 Identities=31% Similarity=0.354 Sum_probs=64.8
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeeccccc-CCcchhHHHHHHHHHHHhhc
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFF-PTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg-~SKK~Akq~AAk~AL~~L~~ 112 (353)
..+|||+.||||||++++.+|.|.+... .|.+.|++.|.|+|..++.|. | .|||+|||.||+.||+.|..
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~-G~~SKK~AEQ~AA~~AL~~L~~ 94 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTL-WDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESS-CBSSHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEe-ccCCHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999998655 899999999999999999988 6 99999999999999999964
No 56
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.49 E-value=5.8e-14 Score=130.60 Aligned_cols=71 Identities=27% Similarity=0.282 Sum_probs=66.6
Q ss_pred cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 191 (353)
...|||+.||||||++++..|.|++ .+.||+ +.|+|.|.|+|..|+.|.|+|||+|||.||+.||+.|...
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 5689999999999999999999998 678987 9999999999999999999999999999999999999875
No 57
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.49 E-value=3.1e-14 Score=130.86 Aligned_cols=100 Identities=27% Similarity=0.265 Sum_probs=80.2
Q ss_pred hhhhc-chhh--HHHHHHHHhhhcccc-cccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccE
Q 018603 10 AVQVN-ARET--DRTTQVNATISTVND-VHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQ 84 (353)
Q Consensus 10 ~~~~~-~~e~--~~~~~v~~li~~~~~-~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~ 84 (353)
|+|++ +.+. +..| +.+++.+.++ ........+|||+.||||||++++..|.|.+ .+.||+|.+.|++.|.|+|.
T Consensus 115 Aiyld~g~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~ 193 (221)
T 2nug_A 115 AVYIDSGRDANFTREL-FYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY 193 (221)
T ss_dssp HHHHHTTSCHHHHHHH-HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE
T ss_pred HHHHhCCCCHHHHHHH-HHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE
Confidence 56666 3444 5555 4566666665 2222234689999999999999999999998 57899999999999999999
Q ss_pred eeecccccCCcchhHHHHHHHHHHHhhc
Q 018603 85 TYESHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 85 ~~~ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
++.|. |.|||.||+.||+.||+.|..
T Consensus 194 -~~~G~-G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 194 -RTLGE-GKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp -EEEEE-ESSHHHHHHHHHHHHHHHHC-
T ss_pred -EEEEe-cCCHHHHHHHHHHHHHHHhhc
Confidence 89998 599999999999999998863
No 58
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.46 E-value=6.6e-14 Score=112.64 Aligned_cols=70 Identities=29% Similarity=0.294 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603 41 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 114 (353)
Q Consensus 41 ~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~ 114 (353)
..++|+.||||||+++ .|.|.+ .+.||+|.+.|++.|.|+|..+ .|. |.|||+|||.||+.||..|....
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~-G~SKK~AEq~AA~~AL~~L~~~~ 83 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGA-GSNKKVAKAYAALAALEKLFPDT 83 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Eee-eCCHHHHHHHHHHHHHHHHhhcC
Confidence 3578999999999998 689998 5789999999999999999887 787 59999999999999999998653
No 59
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.45 E-value=1.1e-13 Score=115.73 Aligned_cols=69 Identities=30% Similarity=0.283 Sum_probs=62.2
Q ss_pred cccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603 38 RDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 113 (353)
Q Consensus 38 ~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~ 113 (353)
....+|||+.||||||+ |.|++ .+.||+|++.|++.|.|+|..+ .|. |.|||+|||.||+.||+.|...
T Consensus 33 ~~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~-G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 33 IPQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQ-GRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CCCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Eee-eCCHHHHHHHHHHHHHHHHHcC
Confidence 34678999999999984 79998 5789999999999999999999 788 5999999999999999999764
No 60
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.45 E-value=1.3e-14 Score=136.18 Aligned_cols=101 Identities=29% Similarity=0.310 Sum_probs=14.3
Q ss_pred hhhhcc-hhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeee
Q 018603 10 AVQVNA-RETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYE 87 (353)
Q Consensus 10 ~~~~~~-~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ 87 (353)
|+|+++ .+.++. ++.+++.+.++........+|||+.||||||++++..|.|.+ ...||.|.+.|++.|+|+|+.++
T Consensus 145 Aiyld~G~~~~~~-~i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~ 223 (248)
T 3n3w_A 145 AIHLEAGFEFAKT-IALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELA 223 (248)
T ss_dssp HHHHHHCHHHHHH-HHHHHHHHHCC-------------------------------------------------------
T ss_pred HHHHHCChHHHHH-HHHHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEE
Confidence 667654 444444 456678887765444456799999999999999999999998 57899999999999999999999
Q ss_pred cccccCCcchhHHHHHHHHHHHhhc
Q 018603 88 SHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 88 ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
.|. |.|||+||+.||+.||+.|..
T Consensus 224 ~G~-G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 224 RAI-AGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -------------------------
T ss_pred Eee-eCCHHHHHHHHHHHHHHHHHc
Confidence 998 599999999999999998853
No 61
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.42 E-value=2.1e-14 Score=133.67 Aligned_cols=102 Identities=25% Similarity=0.300 Sum_probs=15.3
Q ss_pred hhhhc-chhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeec
Q 018603 10 AVQVN-ARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYES 88 (353)
Q Consensus 10 ~~~~~-~~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~a 88 (353)
|+|++ +.+.+..| +.+++.+.++........+|||+.||||||++++..|.|.+...||.|.+.|++.|+++|..++.
T Consensus 130 Aiyld~g~~~~~~~-i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~ 208 (242)
T 2a11_A 130 AIYLQHGMEKAREV-ILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGS 208 (242)
T ss_dssp HHHHHHCHHHHHHH-HHHHTHHHHHHTTC---------------------------------------------------
T ss_pred HHHhcCCHHHHHHH-HHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEE
Confidence 56666 44544544 55677776654443334689999999999999998899998669999999999999999998888
Q ss_pred ccccCCcchhHHHHHHHHHHHhhcc
Q 018603 89 HQFFPTLKEAEHEAAKVALMSLSLD 113 (353)
Q Consensus 89 g~Gg~SKK~Akq~AAk~AL~~L~~~ 113 (353)
|. |.|||+||+.||+.||+.|...
T Consensus 209 G~-G~skk~Ae~~AA~~AL~~L~~~ 232 (242)
T 2a11_A 209 GV-GRSKKEAEQKAAAAAWKALEVL 232 (242)
T ss_dssp -------------------------
T ss_pred ee-eCCHHHHHHHHHHHHHHHHhhc
Confidence 88 5999999999999999998754
No 62
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.39 E-value=5.6e-13 Score=101.88 Aligned_cols=66 Identities=26% Similarity=0.228 Sum_probs=58.7
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
..+||++.||||| ..|.|.+ ...||+|.+.|++.|.|+|..+ .|. |.|||+|+|.||+.||..|..
T Consensus 2 ~~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~-G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 2 SGKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGS-GRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CSSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEe-eCCHHHHHHHHHHHHHHHHHh
Confidence 3689999999994 4689997 5789999999999999999876 687 599999999999999998865
No 63
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.33 E-value=1.8e-14 Score=140.97 Aligned_cols=140 Identities=16% Similarity=0.013 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcch---hHHHHHHHHHHHhhcccC---C--
Q 018603 45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKE---AEHEAAKVALMSLSLDKF---Q-- 116 (353)
Q Consensus 45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~---Akq~AAk~AL~~L~~~~~---~-- 116 (353)
...|.+++.+.|+. .|.....|+.....-...-.|.++.|++..||.+.+. +...|.+++...+.+... .
T Consensus 170 ~~~La~iA~~lgL~--~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l~~~~l~~~~~~~ 247 (341)
T 3rv0_A 170 NNNLFDWSTKLNFT--KRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMV 247 (341)
T ss_dssp HHHHHHHHHHTTTT--TTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHHCGGGC-
T ss_pred HHHHHHHHHHcCcH--HHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46789999999976 3443212221110000012345678999999999987 676666666554443211 1
Q ss_pred --CCcchhHHHHHHHHHHHhcCCC-CceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603 117 --QDDSVLYKNVLQELAQKEAYAL-PVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 117 --~d~~~n~ks~LqE~~qk~~~~~-P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 191 (353)
.....|||+.||||||++++.. |.|++ .+.|| |++.|.|+|+.++.|.|.|||+|||.||+.||+.|...
T Consensus 248 ~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 248 IKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence 1245899999999999998754 69997 45664 99999999999999999999999999999999999765
No 64
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.31 E-value=4.4e-12 Score=98.20 Aligned_cols=68 Identities=26% Similarity=0.209 Sum_probs=57.5
Q ss_pred cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603 40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 114 (353)
Q Consensus 40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~ 114 (353)
..+||++.|+|++ ..|.|.+ .+.||+|++.|++.|.|+|..+ .|. |.|||+|||.||+.||+.|....
T Consensus 5 ~~K~pl~~L~q~~-----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~al~~L~~~~ 73 (75)
T 3p1x_A 5 HGKNPVMELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGA-GSNKKVAKAYAALAALEKLFPDT 73 (75)
T ss_dssp -CCCHHHHHHHHS-----TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHcC-----CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEE-ECCHHHHHHHHHHHHHHHHHccC
Confidence 4677777777763 3689998 5799999999999999999988 787 59999999999999999997653
No 65
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.24 E-value=1.3e-11 Score=114.98 Aligned_cols=69 Identities=38% Similarity=0.455 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603 121 VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 121 ~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
.+||+.|++|++. +..|.|++ .+.||+|.++|+++|.|+|..+ .|.|+|||+|||+||+.||+.|....
T Consensus 4 ~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~~ 73 (236)
T 2l3j_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQFP 73 (236)
T ss_dssp CCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhcc
Confidence 4788888888865 46789997 6789999999999999999986 79999999999999999999998754
No 66
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.00 E-value=6.7e-11 Score=115.76 Aligned_cols=96 Identities=20% Similarity=0.146 Sum_probs=16.5
Q ss_pred hhhhc----chhhHHHHHHHHhhhcccc-cccc---cccCCCHHHHHHHHHHHcCCCC-Ceeeee-ecCCCCCccEEEEE
Q 018603 10 AVQVN----ARETDRTTQVNATISTVND-VHKS---RDMQHLYKNQLQSYTQKKNLPL-PMYSCE-REGPPHASRFKCKV 79 (353)
Q Consensus 10 ~~~~~----~~e~~~~~~v~~li~~~~~-~~~l---~~~~~npKS~LqE~~QK~gl~~-P~Y~l~-~~Gp~h~~~F~~~V 79 (353)
|+|++ |.+.++.|+. +++.+.++ +... ....+|||+.||||||+.++.. |.|.+. +.|| |++.|
T Consensus 215 AIylD~~~~G~~~a~~fi~-~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v 288 (341)
T 3rv0_A 215 ALVIDRFGTEFLDIKEWLE-ELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEV 288 (341)
T ss_dssp HHHHHHCSSTTHHHHHHHH-HHTHHHHHCGGGC-----------------------------------------------
T ss_pred HHhhcCccCCHHHHHHHHH-HHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEE
Confidence 77887 5777777754 46666653 3322 2356899999999999998755 589874 5564 99999
Q ss_pred EEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603 80 TIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 80 ~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
+|+|..++.|. |.|||+|+|.||+.||+.|..
T Consensus 289 ~i~~~~~g~G~-G~SKK~AEq~AA~~AL~~L~~ 320 (341)
T 3rv0_A 289 KIGDILLDEAE-GNSIREAEHRAAMKVLENDEL 320 (341)
T ss_dssp ---------------------------------
T ss_pred EECCEEEEEEE-eCCHHHHHHHHHHHHHHHhhh
Confidence 99999999998 599999999999999998865
No 67
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.94 E-value=9.3e-11 Score=110.20 Aligned_cols=107 Identities=18% Similarity=0.053 Sum_probs=72.7
Q ss_pred EEccEeeecccccCCcchhH--HHHHHHHHHHhhcccCCCCcchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEE
Q 018603 80 TIDGQTYESHQFFPTLKEAE--HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVST 157 (353)
Q Consensus 80 ~I~g~~~~ag~Gg~SKK~Ak--q~AAk~AL~~L~~~~~~~d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~ 157 (353)
.+.++.|++.+||.+.+.+. ..+-+.+...|.+.... ....+||+.|+||+|.... .+.|. ..++.|.+.|++.
T Consensus 155 ~~laD~~EAliGAiylD~G~~~~~~~~~i~~~~~~~i~~-~~~~~~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~ 230 (265)
T 3c4b_A 155 KAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEK-FSANVPRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVT 230 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEE
T ss_pred hHHHHHHHHHhhheeeecCCCHHHHHHHHHHHHHHHHHh-HhhcCCCCHHHHHHHhccC-Cceee--eccccCCCcEEEE
Confidence 45567888888899988776 44444444444332110 0113445555555554432 12232 3445789999999
Q ss_pred EEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603 158 VEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190 (353)
Q Consensus 158 V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~ 190 (353)
|.|+|+.++.|.|.|||+|||.||+.||+.|..
T Consensus 231 v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 231 VEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp EEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999864
No 68
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.67 E-value=1.4e-08 Score=95.30 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=67.7
Q ss_pred hhhhcc-h--hhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEee
Q 018603 10 AVQVNA-R--ETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY 86 (353)
Q Consensus 10 ~~~~~~-~--e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~ 86 (353)
|+|+++ . +.+..| +.+++.+.++.... ...++|+..|+|+|++. +.|.. .++.|.+.|++.|.|+|+.+
T Consensus 167 AiylD~G~~~~~~~~~-i~~~~~~~i~~~~~-~~~k~~l~el~~~~~~~----~~~~~--~~~~~~~~f~v~v~v~~~~~ 238 (265)
T 3c4b_A 167 AIYMDSGMSLEVVWQV-YYPMMQPLIEKFSA-NVPRSPVRELLEMEPET----AKFSP--AERTYDGKVRVTVEVVGKGK 238 (265)
T ss_dssp HHHHHTTSCHHHHHHH-HHHHHHHHHHHHHH-HSCCCHHHHHHHHCTTT----EEECC--CEECTTSCEEEEEEETTTEE
T ss_pred heeeecCCCHHHHHHH-HHHHHHHHHHhHhh-cCCCCHHHHHHHhccCC----ceeee--ccccCCCcEEEEEEEecceE
Confidence 777775 3 455555 56677776654332 33567777777776642 23332 34468899999999999989
Q ss_pred ecccccCCcchhHHHHHHHHHHHhhc
Q 018603 87 ESHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 87 ~ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
+.|. |.|||+|||.||+.||+.|..
T Consensus 239 ~~G~-G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 239 FKGV-GRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp EEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence 9998 599999999999999999864
No 69
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.49 E-value=0.031 Score=45.25 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHhcC-----CCCceEEeccCCCCCCeEEEEEEECC-----EEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603 121 VLYKNVLQELAQKEAY-----ALPVYNTKQSGESHAPTFVSTVEVGG-----EVFSGQGAKSKKQAEMSAAKVAYMRLKE 190 (353)
Q Consensus 121 ~n~ks~LqE~~qk~~~-----~~P~Y~~~~~Gp~H~~~F~~~V~I~G-----~~~~~G~G~SKK~AKq~AA~~AL~~L~~ 190 (353)
.+.++.|+.||++.-. ..|.|.+..... ....| |+|.+-. ...+.- -.+||.||+.||-+|++.|..
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~-~~sk~~AK~sAAf~Ac~~L~~ 80 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSL-LPSTEAAKKDACLKAVHELHN 80 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCc-cccHHHHHHHHHHHHHHHHHH
Confidence 4788999999998632 458898632211 12366 8887742 222323 499999999999999999987
Q ss_pred CC
Q 018603 191 PN 192 (353)
Q Consensus 191 ~~ 192 (353)
..
T Consensus 81 ~G 82 (102)
T 2kou_A 81 LG 82 (102)
T ss_dssp HC
T ss_pred CC
Confidence 65
No 70
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=92.74 E-value=0.013 Score=62.78 Aligned_cols=110 Identities=12% Similarity=-0.041 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcc-hhHHHHHHHHHHHhhcccCC---CCcc
Q 018603 45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLK-EAEHEAAKVALMSLSLDKFQ---QDDS 120 (353)
Q Consensus 45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK-~Akq~AAk~AL~~L~~~~~~---~d~~ 120 (353)
...|.+++++.|+. .|.....|+. .+-.+.++.|++..||.+.+ .+...|.+.+...+...... ....
T Consensus 375 n~~La~~A~~lgL~--~~l~~~~~e~------~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~ 446 (756)
T 2qvw_A 375 NEALNYLVQTLGLP--QLAEFSNNLV------AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSAC 446 (756)
T ss_dssp HHHHHHHHHHTTCT--TTCBCCSCC--------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CC
T ss_pred chHHHHHHHHcChH--HHhccCCCCC------CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccc
Confidence 46799999999976 5665444442 12356678899999999999 88775555555555444321 2346
Q ss_pred hhH-HHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHH---------HHHHHHHHHHhhC
Q 018603 121 VLY-KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE---------MSAAKVAYMRLKE 190 (353)
Q Consensus 121 ~n~-ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AK---------q~AA~~AL~~L~~ 190 (353)
.|| |+.||||||+++ .+.|.+.+.+.|| -.||+.||+.|..
T Consensus 447 ~Dp~Kt~LqE~~q~~~-----------------------------ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~ 497 (756)
T 2qvw_A 447 PDAVTKASKRVCMGEA-----------------------------GAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRD 497 (756)
T ss_dssp CHHHHHHHHHHHTSCC-----------------------------CHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHhccc-----------------------------hhhhhhhhhhHHhhhccccchhhHHHHHHHHhhcc
Confidence 789 999999998433 3445566777777 5799999988876
Q ss_pred C
Q 018603 191 P 191 (353)
Q Consensus 191 ~ 191 (353)
.
T Consensus 498 ~ 498 (756)
T 2qvw_A 498 I 498 (756)
T ss_dssp S
T ss_pred c
Confidence 4
No 71
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=90.13 E-value=0.53 Score=37.86 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHcCC-----CCCeeeeeecCCCCCccEEEEEEEccE----eeecccccCCcchhHHHHHHHHHHHhhc
Q 018603 42 HLYKNQLQSYTQKKNL-----PLPMYSCEREGPPHASRFKCKVTIDGQ----TYESHQFFPTLKEAEHEAAKVALMSLSL 112 (353)
Q Consensus 42 ~npKS~LqE~~QK~gl-----~~P~Y~l~~~Gp~h~~~F~~~V~I~g~----~~~ag~Gg~SKK~Akq~AAk~AL~~L~~ 112 (353)
.+.++.|+.||+++-- ..|.|.+..... ....| |+|.+-.. .+.... ..+|+.||+.||-.|...|.+
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~-~~sk~~AK~sAAf~Ac~~L~~ 80 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSL-LPSTEAAKKDACLKAVHELHN 80 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCc-cccHHHHHHHHHHHHHHHHHH
Confidence 4668999999999842 247888532211 12346 88877431 122122 489999999999999999987
Q ss_pred ccCC
Q 018603 113 DKFQ 116 (353)
Q Consensus 113 ~~~~ 116 (353)
.+..
T Consensus 81 ~G~L 84 (102)
T 2kou_A 81 LGVL 84 (102)
T ss_dssp HCSC
T ss_pred CCCC
Confidence 7643
No 72
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=90.02 E-value=0.32 Score=52.86 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHhcCCCCceEEe------ccC------CCCCC-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHH
Q 018603 121 VLYKNVLQELAQKEAYALPVYNTK------QSG------ESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR 187 (353)
Q Consensus 121 ~n~ks~LqE~~qk~~~~~P~Y~~~------~~G------p~H~~-~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~ 187 (353)
..||..+++ +.|-. +.|+++ +.| |...| .|.|.+.+-+...-.+.-+-||+|+|.||+.||++
T Consensus 17 ~~pk~~~~q---~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~ 92 (950)
T 3htx_A 17 PTPKAIIHQ---KFGAK-ASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDK 92 (950)
T ss_dssp CCCHHHHHH---TTGGG-SEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHH---HhCcc-eeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHH
Confidence 356766653 33333 578763 122 22233 88888888665555688899999999999999999
Q ss_pred hhCCCC
Q 018603 188 LKEPNP 193 (353)
Q Consensus 188 L~~~~~ 193 (353)
|+..+.
T Consensus 93 ~g~~~~ 98 (950)
T 3htx_A 93 LGIRPQ 98 (950)
T ss_dssp TTSTTT
T ss_pred hCCCcc
Confidence 998654
No 73
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.14 E-value=2.1 Score=35.17 Aligned_cols=71 Identities=18% Similarity=0.024 Sum_probs=45.1
Q ss_pred cchhHHHHHHHHHHHhcCC--CCceEE--eccCCCCCCeEEEEEEEC--CEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603 119 DSVLYKNVLQELAQKEAYA--LPVYNT--KQSGESHAPTFVSTVEVG--GEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192 (353)
Q Consensus 119 ~~~n~ks~LqE~~qk~~~~--~P~Y~~--~~~Gp~H~~~F~~~V~I~--G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~ 192 (353)
+...||++|....|+--.. .-.|.+ ...| .++=.|++.+. ...-..+.|+.|-+|++.||-.|++.|+...
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g---~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~Lg 91 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHTNG---PKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWG 91 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCS---SSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEeecC---CceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHcC
Confidence 3567999999887764221 112322 2233 23345666553 2222357899999999999999999998653
No 74
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=78.29 E-value=1.9 Score=47.01 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHcCCCCCeeeeeec------CC------CCC-ccEEEEEEEccEeeecccccCCcchhHHHHHHHHHH
Q 018603 42 HLYKNQLQSYTQKKNLPLPMYSCERE------GP------PHA-SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALM 108 (353)
Q Consensus 42 ~npKS~LqE~~QK~gl~~P~Y~l~~~------Gp------~h~-~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~ 108 (353)
..||..++ ||.|-. ..|.+++. |- ..- -.|.|.+.+-+..+-.+. ..-||+|||.||+.||+
T Consensus 17 ~~pk~~~~---q~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~-~~~kkd~eq~aa~~al~ 91 (950)
T 3htx_A 17 PTPKAIIH---QKFGAK-ASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNV-FKKKKDSEQSAAELALD 91 (950)
T ss_dssp CCCHHHHH---HTTGGG-SEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCC-BSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHH---HHhCcc-eeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecch-hhccccHHHHHHHHHHH
Confidence 46777765 555544 67877321 11 011 268888888776666666 68999999999999999
Q ss_pred Hhhcc
Q 018603 109 SLSLD 113 (353)
Q Consensus 109 ~L~~~ 113 (353)
+|.-+
T Consensus 92 ~~g~~ 96 (950)
T 3htx_A 92 KLGIR 96 (950)
T ss_dssp TTTST
T ss_pred HhCCC
Confidence 98643
No 75
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=57.94 E-value=6.8 Score=41.82 Aligned_cols=47 Identities=2% Similarity=-0.179 Sum_probs=31.7
Q ss_pred hhhhc--chhhHHHHHHHHhhhcccccccccccCCCH-HHHHHHHHHHcCC
Q 018603 10 AVQVN--ARETDRTTQVNATISTVNDVHKSRDMQHLY-KNQLQSYTQKKNL 57 (353)
Q Consensus 10 ~~~~~--~~e~~~~~~v~~li~~~~~~~~l~~~~~np-KS~LqE~~QK~gl 57 (353)
|+|++ |.+.++.|+ .+++.+.++...+....+|| |+.||||+|++++
T Consensus 414 AiylD~~G~~~a~~~v-~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~i 463 (756)
T 2qvw_A 414 SIFTGPNGIYGCEEFL-AKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAG 463 (756)
T ss_dssp HHHHSTTHHHHHHHHH-HHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCC
T ss_pred cccccccChHHHHHHH-HHHHHhhhhcccccccccCchHHHHHHHHhccch
Confidence 67886 667666654 56666666544444566899 9999999997653
No 76
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=51.43 E-value=38 Score=29.64 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=62.9
Q ss_pred ccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccCC----CC---------cchhHHHHHHHHHHHhcC---
Q 018603 73 SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ----QD---------DSVLYKNVLQELAQKEAY--- 136 (353)
Q Consensus 73 ~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~~----~d---------~~~n~ks~LqE~~qk~~~--- 136 (353)
|.-++.++-.|+.+..| +.|.++|+. |++.+.+.|.+.+.. .+ -.....=.|.+++.....
T Consensus 53 P~~t~lIF~SGKiv~TG--akS~~~~~~-a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~Y 129 (182)
T 1ais_A 53 PKVALLIFSSGKLVVTG--AKSVQDIER-AVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEY 129 (182)
T ss_dssp SCCEEEECTTSEEEEEE--ESSHHHHHH-HHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHSTTEEC
T ss_pred CcEEEEEeCCCeEEEec--CCCHHHHHH-HHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHHhhCCCCEE
Confidence 44556666689888765 688888877 555555666554431 01 011222235666654211
Q ss_pred -----CCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603 137 -----ALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190 (353)
Q Consensus 137 -----~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~ 190 (353)
+-..|++. .|.-++.+...|+..-+| ++|..++++ |++..+..|..
T Consensus 130 ePe~fpgli~R~~------~pk~~~lIF~SGKiviTG-aks~~~~~~-a~~~i~~~L~~ 180 (182)
T 1ais_A 130 EPEQFPGVIYRVK------EPKSVILLFSSGKIVCSG-AKSEADAWE-AVRKLLRELDK 180 (182)
T ss_dssp CTTTCSSEEEEET------TTTEEEEECTTSEEEEEE-ESSHHHHHH-HHHHHHHHHTT
T ss_pred CCccCceEEEEeC------CCcEEEEEecCCEEEEEe-cCCHHHHHH-HHHHHHHHHHH
Confidence 11123322 245566666689998777 689999888 67777777653
No 77
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=48.30 E-value=73 Score=27.97 Aligned_cols=107 Identities=20% Similarity=0.141 Sum_probs=62.3
Q ss_pred CccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccCC----CC-c--------chhHHHHHHHHHHHhcC--
Q 018603 72 ASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ----QD-D--------SVLYKNVLQELAQKEAY-- 136 (353)
Q Consensus 72 ~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~~----~d-~--------~~n~ks~LqE~~qk~~~-- 136 (353)
.|.-++.++-.|+.+..| +.|.++|+. |++.+.+.|.+.++. .+ . .....=.|.+++.....
T Consensus 56 ~Pk~t~lIF~SGKiv~TG--AkS~e~a~~-a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~e 132 (188)
T 2z8u_A 56 VPKVALLIFRSGKVNCTG--AKSKEEAEI-AIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMVEGTE 132 (188)
T ss_dssp TTTEEEEECTTSEEEEEE--ESSHHHHHH-HHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHHSTTEE
T ss_pred CCcEEEEEeCCCeEEEec--CCCHHHHHH-HHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHHHHHhhCcCcE
Confidence 344566666689888765 689888887 555555555544431 11 0 11111236666655221
Q ss_pred ------CCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhh
Q 018603 137 ------ALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 189 (353)
Q Consensus 137 ------~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~ 189 (353)
+-..|++. .|.-++.+...|+..-+| ++|..++++ |.+..+..|.
T Consensus 133 YePe~fPgliyR~~------~Pk~t~lIF~SGKiviTG-aks~~~~~~-A~~~i~~~L~ 183 (188)
T 2z8u_A 133 YEPEQFPGLVYRLD------DPKVVVLIFGSGKVVITG-LKSEEDAKR-ALKKILDTIK 183 (188)
T ss_dssp ECTTTSSSEEEEEE------TTEEEEEECTTSEEEEES-CSCHHHHHH-HHHHHHHHHH
T ss_pred ECCccCceEEEEeC------CCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHHHHH
Confidence 11123332 345566666689998777 689898888 6666666664
No 78
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=39.33 E-value=94 Score=27.49 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=64.4
Q ss_pred CccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccCC----CC-c--------chhHHHHHHHHHHHhcC--
Q 018603 72 ASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ----QD-D--------SVLYKNVLQELAQKEAY-- 136 (353)
Q Consensus 72 ~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~~----~d-~--------~~n~ks~LqE~~qk~~~-- 136 (353)
.|.-++.++-.|+.+..| +.|.++|+. |++.+.+.|.+.++. .+ . .....=.|.+++.....
T Consensus 56 ~Pk~t~lIF~SGKiv~TG--akS~e~a~~-a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~ 132 (198)
T 1mp9_A 56 SPKITSLIFKSGKMVVTG--AKSTDELIK-AVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNM 132 (198)
T ss_dssp TTTEEEEECTTSEEEEEC--CSSHHHHHH-HHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHHSSSEE
T ss_pred CCceEEEEeCCCeEEEec--cCCHHHHHH-HHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHHHhhcCCcE
Confidence 345666677789888765 689888877 556555666554431 11 0 11111246666655211
Q ss_pred ------CCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603 137 ------ALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 191 (353)
Q Consensus 137 ------~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 191 (353)
+-..|++. .|.-++.+...|+..-+| +++..++++ |.+..+..|..-
T Consensus 133 YePe~fPgliyR~~------~Pk~t~lIF~SGKiviTG-aks~~~~~~-A~~~i~~~L~~~ 185 (198)
T 1mp9_A 133 YEPEQFPGLIYRMD------EPRVVLLIFSSGKMVITG-AKREDEVHK-AVKKIFDKLVEL 185 (198)
T ss_dssp CCTTTCSSEEEEET------TTTEEEEECTTSEEEEEE-ESSHHHHHH-HHHHHHHHHHHT
T ss_pred ECCccCCeEEEEeC------CCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHHHHHHh
Confidence 11123332 345666666789998777 689888888 666666777543
No 79
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=35.08 E-value=1e+02 Score=27.90 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=63.6
Q ss_pred ccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccCCCC------------cchhHHHHHHHHHHHhcC----
Q 018603 73 SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQD------------DSVLYKNVLQELAQKEAY---- 136 (353)
Q Consensus 73 ~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~~~d------------~~~n~ks~LqE~~qk~~~---- 136 (353)
|.-++.++-.|+.+..| |.+.++|+. |++.+.+.|.+.++... -...+.=.|.+++...+.
T Consensus 87 Pk~t~LIF~SGKiV~TG--AkS~e~a~~-A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~Y 163 (218)
T 3eik_A 87 PKTTALIFASGKMVITG--AKSEKSSRM-AAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSY 163 (218)
T ss_dssp TTEEEEECTTSEEEEEE--ESSHHHHHH-HHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTTTEEC
T ss_pred CcEEEEEECCCeEEEEe--cCCHHHHHH-HHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccCCcEE
Confidence 44556666689888765 689888887 55556666665543110 012233347777765432
Q ss_pred -----CCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603 137 -----ALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190 (353)
Q Consensus 137 -----~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~ 190 (353)
+-..|++. .+.-++.+...|+..-+| +++..++++ |-...+..|..
T Consensus 164 EPE~fPGliyR~~------~pkvt~lIF~SGKiviTG-aks~~d~~~-A~~~I~p~L~~ 214 (218)
T 3eik_A 164 EPELFPGLIYRMV------KPKIVLLIFVSGKIVLTG-AKVRDDIYQ-AFNNIYPVLIQ 214 (218)
T ss_dssp CTTTSSSEEEEET------TTTEEEEECTTSEEEEEE-ESSHHHHHH-HHHHHHHHHHH
T ss_pred CCccCceEEEEcC------CCCEEEEEeCCCeEEEEe-cCCHHHHHH-HHHHHHHHHHH
Confidence 11123332 244566666689988777 588888877 66666666543
Done!