Query 018605
Match_columns 353
No_of_seqs 256 out of 1161
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:30:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 1.8E-63 3.9E-68 451.6 14.4 165 1-168 1-187 (189)
2 PF00170 bZIP_1: bZIP transcri 99.5 1.4E-13 3.1E-18 105.1 9.3 64 257-320 1-64 (64)
3 smart00338 BRLZ basic region l 99.4 8.1E-13 1.8E-17 101.1 8.9 62 259-320 3-64 (65)
4 KOG3584 cAMP response element 99.3 2.3E-12 4.9E-17 124.3 8.7 63 251-313 281-343 (348)
5 KOG4005 Transcription factor X 99.3 2E-11 4.3E-16 115.2 12.3 80 259-340 67-146 (292)
6 KOG4343 bZIP transcription fac 99.2 7.3E-11 1.6E-15 121.4 9.9 71 253-323 273-343 (655)
7 KOG0709 CREB/ATF family transc 99.2 3.6E-11 7.7E-16 122.1 7.3 77 255-331 245-321 (472)
8 PF07716 bZIP_2: Basic region 99.1 2.7E-10 5.9E-15 84.6 8.8 50 261-311 5-54 (54)
9 KOG0837 Transcriptional activa 98.6 1.4E-07 3.1E-12 90.3 9.4 68 250-317 195-262 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.4 3E-09 6.5E-14 87.0 -6.4 67 256-322 25-91 (92)
11 KOG4571 Activating transcripti 98.3 4.1E-06 8.9E-11 81.5 10.1 57 262-318 228-284 (294)
12 KOG3119 Basic region leucine z 98.0 1.2E-05 2.6E-10 77.6 7.5 58 262-319 195-252 (269)
13 KOG4196 bZIP transcription fac 98.0 4E-05 8.6E-10 67.0 9.8 67 258-331 50-116 (135)
14 PF07777 MFMR: G-box binding p 97.6 0.0003 6.4E-09 65.2 9.0 122 30-172 22-173 (189)
15 KOG3863 bZIP transcription fac 97.5 0.00017 3.8E-09 76.4 7.2 74 260-333 489-563 (604)
16 PF06156 DUF972: Protein of un 96.9 0.0044 9.5E-08 52.7 7.9 50 282-331 8-57 (107)
17 PRK10884 SH3 domain-containing 96.9 0.013 2.9E-07 54.9 11.5 71 257-327 99-170 (206)
18 PRK13169 DNA replication intia 96.7 0.0074 1.6E-07 51.6 7.9 49 282-330 8-56 (110)
19 TIGR02449 conserved hypothetic 96.6 0.016 3.4E-07 45.4 8.0 57 282-340 7-63 (65)
20 PF06005 DUF904: Protein of un 96.5 0.018 3.9E-07 45.8 8.1 39 284-322 6-44 (72)
21 TIGR02894 DNA_bind_RsfA transc 96.5 0.0094 2E-07 54.1 7.2 52 290-343 98-149 (161)
22 COG3074 Uncharacterized protei 96.2 0.024 5.2E-07 45.2 7.2 56 283-340 19-74 (79)
23 PF10224 DUF2205: Predicted co 96.2 0.03 6.5E-07 45.5 7.8 49 284-332 18-66 (80)
24 PF06005 DUF904: Protein of un 96.0 0.049 1.1E-06 43.3 8.2 47 283-329 19-65 (72)
25 KOG4005 Transcription factor X 95.9 0.073 1.6E-06 51.4 10.5 58 282-339 97-154 (292)
26 PRK15422 septal ring assembly 95.9 0.043 9.3E-07 44.5 7.5 56 283-340 19-74 (79)
27 PF02183 HALZ: Homeobox associ 95.5 0.038 8.2E-07 40.2 5.3 38 293-330 2-39 (45)
28 PF13747 DUF4164: Domain of un 95.4 0.32 6.9E-06 40.0 11.1 81 256-338 6-86 (89)
29 PRK13729 conjugal transfer pil 95.4 0.074 1.6E-06 55.6 9.1 49 282-330 76-124 (475)
30 PF08614 ATG16: Autophagy prot 95.4 0.2 4.3E-06 46.0 11.0 70 262-331 117-186 (194)
31 COG3074 Uncharacterized protei 95.4 0.095 2.1E-06 41.8 7.5 53 280-332 23-75 (79)
32 KOG1414 Transcriptional activa 95.3 0.00066 1.4E-08 68.9 -6.0 67 253-319 146-216 (395)
33 COG4467 Regulator of replicati 95.3 0.069 1.5E-06 45.8 7.1 47 282-328 8-54 (114)
34 TIGR02449 conserved hypothetic 95.3 0.086 1.9E-06 41.3 7.0 47 284-330 2-48 (65)
35 PRK10884 SH3 domain-containing 95.2 0.3 6.5E-06 45.9 11.7 57 276-332 112-168 (206)
36 PF04102 SlyX: SlyX; InterPro 95.2 0.1 2.2E-06 40.8 7.2 51 281-331 3-53 (69)
37 KOG1853 LIS1-interacting prote 94.9 0.27 5.9E-06 48.0 10.7 78 265-344 28-123 (333)
38 PRK15422 septal ring assembly 94.9 0.14 3E-06 41.6 7.4 51 281-331 24-74 (79)
39 COG4026 Uncharacterized protei 94.8 0.17 3.6E-06 48.7 8.9 51 281-331 141-191 (290)
40 PRK04325 hypothetical protein; 94.4 0.3 6.4E-06 38.9 8.2 49 282-330 9-57 (74)
41 PRK02119 hypothetical protein; 94.4 0.28 6.1E-06 39.0 8.0 50 281-330 8-57 (73)
42 PRK00295 hypothetical protein; 94.4 0.3 6.5E-06 38.2 8.0 49 282-330 5-53 (68)
43 PRK02793 phi X174 lysis protei 94.4 0.28 6.1E-06 38.8 8.0 51 281-331 7-57 (72)
44 PRK00736 hypothetical protein; 94.3 0.34 7.3E-06 38.0 8.2 49 282-330 5-53 (68)
45 PF02183 HALZ: Homeobox associ 94.3 0.19 4.2E-06 36.5 6.2 42 286-327 2-43 (45)
46 PRK04406 hypothetical protein; 94.3 0.33 7.2E-06 38.8 8.1 49 282-330 11-59 (75)
47 PF11559 ADIP: Afadin- and alp 94.3 0.66 1.4E-05 40.7 10.9 70 261-330 45-114 (151)
48 PF10473 CENP-F_leu_zip: Leuci 94.1 0.85 1.9E-05 40.7 11.2 68 263-330 33-100 (140)
49 TIGR00219 mreC rod shape-deter 93.9 0.12 2.7E-06 50.4 6.0 40 290-329 67-110 (283)
50 KOG1962 B-cell receptor-associ 93.7 0.41 8.8E-06 45.5 9.0 51 278-328 161-211 (216)
51 PF04880 NUDE_C: NUDE protein, 93.7 0.1 2.2E-06 47.7 4.8 43 284-330 2-44 (166)
52 PRK11637 AmiB activator; Provi 93.5 0.93 2E-05 46.2 12.0 56 275-330 68-123 (428)
53 PRK00846 hypothetical protein; 93.5 0.55 1.2E-05 38.0 8.1 50 281-330 12-61 (77)
54 PF10186 Atg14: UV radiation r 93.5 1 2.2E-05 42.6 11.4 52 276-327 57-108 (302)
55 PF06156 DUF972: Protein of un 93.4 0.36 7.8E-06 41.1 7.3 53 286-340 5-57 (107)
56 PF07888 CALCOCO1: Calcium bin 93.1 0.97 2.1E-05 48.3 11.5 61 266-326 155-215 (546)
57 PRK13922 rod shape-determining 92.9 0.69 1.5E-05 44.3 9.3 40 290-329 70-112 (276)
58 PF09726 Macoilin: Transmembra 92.8 0.83 1.8E-05 50.1 10.8 42 284-325 540-581 (697)
59 PRK11637 AmiB activator; Provi 92.6 1.3 2.9E-05 45.2 11.5 46 281-326 81-126 (428)
60 KOG1029 Endocytic adaptor prot 92.5 1.1 2.4E-05 49.7 11.0 12 35-46 82-93 (1118)
61 TIGR03752 conj_TIGR03752 integ 92.4 0.45 9.7E-06 49.9 7.8 37 293-329 106-142 (472)
62 KOG1414 Transcriptional activa 92.2 0.024 5.3E-07 57.7 -1.6 56 262-323 286-341 (395)
63 COG2433 Uncharacterized conser 92.2 0.49 1.1E-05 50.9 7.9 46 282-327 422-467 (652)
64 COG4026 Uncharacterized protei 92.2 0.64 1.4E-05 44.8 7.9 7 209-215 44-50 (290)
65 smart00338 BRLZ basic region l 92.2 1.3 2.9E-05 33.6 8.3 40 288-327 25-64 (65)
66 PF08172 CASP_C: CASP C termin 92.1 0.63 1.4E-05 44.9 8.0 38 294-331 98-135 (248)
67 PF11932 DUF3450: Protein of u 92.0 2.6 5.6E-05 40.1 12.0 54 276-329 50-103 (251)
68 PF14197 Cep57_CLD_2: Centroso 92.0 1.1 2.4E-05 35.3 7.8 48 282-329 12-66 (69)
69 PRK10803 tol-pal system protei 91.9 1.3 2.8E-05 42.8 9.8 46 284-329 56-101 (263)
70 PRK04406 hypothetical protein; 91.9 1.5 3.2E-05 35.1 8.6 55 284-340 6-60 (75)
71 PF04977 DivIC: Septum formati 91.9 0.42 9.1E-06 36.8 5.3 25 284-308 26-50 (80)
72 PF11932 DUF3450: Protein of u 91.8 2.9 6.3E-05 39.7 12.0 49 282-330 49-97 (251)
73 PF03962 Mnd1: Mnd1 family; I 91.8 0.88 1.9E-05 42.1 8.2 17 311-327 111-127 (188)
74 KOG3335 Predicted coiled-coil 91.8 0.23 5E-06 45.9 4.3 43 261-309 91-133 (181)
75 PF12808 Mto2_bdg: Micro-tubul 91.7 0.44 9.6E-06 35.9 5.0 48 280-330 2-49 (52)
76 PF07106 TBPIP: Tat binding pr 91.7 0.52 1.1E-05 42.2 6.5 52 280-331 84-137 (169)
77 TIGR02209 ftsL_broad cell divi 91.6 0.71 1.5E-05 36.4 6.5 43 296-338 24-66 (85)
78 KOG3119 Basic region leucine z 91.6 0.82 1.8E-05 44.5 8.2 47 268-314 208-254 (269)
79 KOG3650 Predicted coiled-coil 91.5 0.81 1.7E-05 39.0 7.0 46 287-332 61-106 (120)
80 PF12718 Tropomyosin_1: Tropom 91.5 0.98 2.1E-05 40.0 7.9 46 283-328 15-60 (143)
81 PRK02119 hypothetical protein; 91.3 1.8 3.8E-05 34.4 8.4 57 283-341 3-59 (73)
82 COG1579 Zn-ribbon protein, pos 91.3 2.8 6E-05 40.5 11.3 41 268-308 38-78 (239)
83 PF11559 ADIP: Afadin- and alp 91.3 4.3 9.3E-05 35.5 11.8 47 281-327 79-125 (151)
84 KOG1029 Endocytic adaptor prot 91.3 1.7 3.6E-05 48.3 10.8 11 278-288 396-406 (1118)
85 PF13851 GAS: Growth-arrest sp 91.3 3.7 8E-05 38.3 11.9 62 255-316 66-127 (201)
86 PRK00888 ftsB cell division pr 91.2 0.86 1.9E-05 38.5 6.9 54 278-334 30-83 (105)
87 COG4942 Membrane-bound metallo 91.2 1.7 3.8E-05 45.0 10.4 73 261-333 38-110 (420)
88 PF00170 bZIP_1: bZIP transcri 91.1 2.9 6.2E-05 31.7 9.1 38 289-326 26-63 (64)
89 KOG0982 Centrosomal protein Nu 90.9 2.1 4.6E-05 44.6 10.5 49 282-330 297-345 (502)
90 PRK13169 DNA replication intia 90.8 1.1 2.3E-05 38.5 7.2 51 286-338 5-55 (110)
91 KOG4343 bZIP transcription fac 90.8 0.96 2.1E-05 48.2 8.2 69 254-333 271-339 (655)
92 PF05266 DUF724: Protein of un 90.7 2.7 5.8E-05 39.2 10.3 56 261-316 89-144 (190)
93 COG2900 SlyX Uncharacterized p 90.5 2.1 4.6E-05 34.3 8.1 51 281-331 7-57 (72)
94 TIGR02894 DNA_bind_RsfA transc 90.4 3 6.5E-05 38.2 10.0 38 280-317 109-146 (161)
95 PF08172 CASP_C: CASP C termin 90.4 1.1 2.4E-05 43.3 7.7 45 280-324 91-135 (248)
96 PF12711 Kinesin-relat_1: Kine 90.3 1.5 3.2E-05 36.2 7.3 38 293-330 21-64 (86)
97 PF07888 CALCOCO1: Calcium bin 90.3 3.5 7.7E-05 44.2 11.9 49 282-330 178-226 (546)
98 PF12325 TMF_TATA_bd: TATA ele 90.3 1.4 3E-05 38.3 7.5 66 257-322 19-87 (120)
99 PRK02793 phi X174 lysis protei 90.2 2.5 5.5E-05 33.4 8.3 56 285-342 4-59 (72)
100 KOG0977 Nuclear envelope prote 90.1 2 4.4E-05 45.9 10.1 60 272-331 131-190 (546)
101 KOG2264 Exostosin EXT1L [Signa 90.1 1.5 3.2E-05 47.3 8.9 50 281-330 92-141 (907)
102 PF04156 IncA: IncA protein; 90.1 5.6 0.00012 35.8 11.7 55 275-329 123-177 (191)
103 PF07106 TBPIP: Tat binding pr 90.1 0.98 2.1E-05 40.4 6.7 16 290-305 117-132 (169)
104 PF04102 SlyX: SlyX; InterPro 89.8 2 4.4E-05 33.5 7.4 52 286-339 1-52 (69)
105 PF09738 DUF2051: Double stran 89.8 1.4 3.1E-05 43.8 8.1 73 257-329 88-166 (302)
106 PF09304 Cortex-I_coil: Cortex 89.7 1.7 3.6E-05 37.3 7.3 53 266-318 21-73 (107)
107 PF04728 LPP: Lipoprotein leuc 89.6 3.4 7.4E-05 31.6 8.2 48 282-329 3-50 (56)
108 PF05266 DUF724: Protein of un 89.6 5.6 0.00012 37.0 11.4 51 279-329 128-178 (190)
109 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.5 7.8 0.00017 33.6 11.7 33 297-329 99-131 (132)
110 PF10186 Atg14: UV radiation r 89.5 5 0.00011 37.9 11.3 35 278-312 66-100 (302)
111 PF05377 FlaC_arch: Flagella a 89.4 1.6 3.4E-05 33.3 6.2 38 284-321 2-39 (55)
112 PF04111 APG6: Autophagy prote 89.4 6.4 0.00014 39.1 12.4 22 309-330 112-133 (314)
113 PRK00888 ftsB cell division pr 89.3 1.6 3.4E-05 36.9 7.0 33 299-331 30-62 (105)
114 PF01166 TSC22: TSC-22/dip/bun 89.3 0.4 8.6E-06 36.9 3.0 41 296-340 14-54 (59)
115 PF12709 Kinetocho_Slk19: Cent 89.3 2.1 4.5E-05 35.5 7.4 44 280-323 40-83 (87)
116 PF07412 Geminin: Geminin; In 89.3 1.1 2.4E-05 42.2 6.6 43 285-331 128-170 (200)
117 COG3883 Uncharacterized protei 89.2 1.7 3.6E-05 42.7 7.9 57 274-330 51-111 (265)
118 PRK00846 hypothetical protein; 89.2 2.8 6.1E-05 33.9 7.9 59 284-344 8-66 (77)
119 COG1579 Zn-ribbon protein, pos 89.1 3.6 7.9E-05 39.7 10.1 52 279-330 86-137 (239)
120 PF10211 Ax_dynein_light: Axon 89.1 2.9 6.2E-05 38.7 9.1 55 284-339 122-176 (189)
121 PF10805 DUF2730: Protein of u 89.0 2 4.2E-05 36.3 7.3 44 286-329 46-91 (106)
122 PRK09039 hypothetical protein; 89.0 4.3 9.3E-05 40.8 11.0 9 308-316 142-150 (343)
123 PF10226 DUF2216: Uncharacteri 88.9 3.8 8.1E-05 38.5 9.6 19 257-275 19-37 (195)
124 PF15294 Leu_zip: Leucine zipp 88.9 1.3 2.7E-05 43.7 6.9 45 287-331 130-174 (278)
125 PF08317 Spc7: Spc7 kinetochor 88.8 4.2 9E-05 40.3 10.6 48 282-329 209-256 (325)
126 KOG1318 Helix loop helix trans 88.6 5.4 0.00012 41.4 11.5 31 259-289 227-257 (411)
127 PF14197 Cep57_CLD_2: Centroso 88.5 3.1 6.8E-05 32.8 7.6 24 286-309 9-32 (69)
128 PF06785 UPF0242: Uncharacteri 88.4 4.4 9.5E-05 41.2 10.4 51 278-328 123-173 (401)
129 PF14662 CCDC155: Coiled-coil 88.4 2.9 6.3E-05 39.3 8.6 42 285-326 98-139 (193)
130 PF12329 TMF_DNA_bd: TATA elem 88.4 3.6 7.7E-05 32.7 8.0 51 280-330 10-60 (74)
131 PF05103 DivIVA: DivIVA protei 88.3 0.26 5.6E-06 41.7 1.6 48 282-329 25-72 (131)
132 PF04999 FtsL: Cell division p 88.2 1.8 3.9E-05 35.2 6.4 47 293-339 32-78 (97)
133 PF08647 BRE1: BRE1 E3 ubiquit 88.1 11 0.00023 31.2 11.0 68 263-330 5-72 (96)
134 KOG0995 Centromere-associated 88.1 3.8 8.3E-05 44.0 10.3 49 281-329 279-327 (581)
135 PF05700 BCAS2: Breast carcino 87.8 7.1 0.00015 36.8 11.0 56 275-331 162-217 (221)
136 PRK04325 hypothetical protein; 87.8 3.1 6.7E-05 33.1 7.3 54 284-339 4-57 (74)
137 PF13815 Dzip-like_N: Iguana/D 87.7 1.7 3.8E-05 37.0 6.3 38 288-325 79-116 (118)
138 PF07989 Microtub_assoc: Micro 87.5 2.4 5.2E-05 33.9 6.6 46 285-330 3-56 (75)
139 PF12325 TMF_TATA_bd: TATA ele 87.5 4 8.6E-05 35.5 8.4 12 317-328 96-107 (120)
140 KOG4571 Activating transcripti 87.4 7.8 0.00017 38.6 11.3 56 260-315 230-288 (294)
141 PRK00295 hypothetical protein; 87.4 3.8 8.3E-05 32.1 7.5 51 287-339 3-53 (68)
142 PF10473 CENP-F_leu_zip: Leuci 87.3 10 0.00023 33.8 11.1 46 294-341 57-102 (140)
143 PF09744 Jnk-SapK_ap_N: JNK_SA 87.3 5.3 0.00012 36.3 9.5 30 293-322 86-115 (158)
144 COG3883 Uncharacterized protei 87.2 2.5 5.5E-05 41.4 7.8 52 279-330 49-100 (265)
145 PRK10803 tol-pal system protei 87.1 1.8 3.8E-05 41.9 6.7 53 275-327 54-106 (263)
146 KOG0971 Microtubule-associated 87.0 6.8 0.00015 44.4 11.7 17 314-330 372-388 (1243)
147 KOG0250 DNA repair protein RAD 86.9 6 0.00013 45.3 11.4 51 279-329 376-427 (1074)
148 PF04156 IncA: IncA protein; 86.9 12 0.00026 33.7 11.6 47 284-330 125-171 (191)
149 PF05377 FlaC_arch: Flagella a 86.9 2.4 5.1E-05 32.4 5.8 37 291-327 2-38 (55)
150 PF08826 DMPK_coil: DMPK coile 86.9 4.7 0.0001 31.2 7.6 43 288-330 17-59 (61)
151 PF08826 DMPK_coil: DMPK coile 86.8 6.8 0.00015 30.4 8.5 36 282-317 25-60 (61)
152 PF09744 Jnk-SapK_ap_N: JNK_SA 86.8 7.3 0.00016 35.4 10.1 46 285-330 92-137 (158)
153 PF04849 HAP1_N: HAP1 N-termin 86.8 1.8 3.8E-05 43.3 6.6 34 297-330 214-247 (306)
154 PF08614 ATG16: Autophagy prot 86.8 8.7 0.00019 35.2 10.8 44 286-329 127-170 (194)
155 KOG1962 B-cell receptor-associ 86.8 4.9 0.00011 38.3 9.3 45 287-331 149-193 (216)
156 PF09726 Macoilin: Transmembra 86.7 57 0.0012 36.2 19.4 11 255-265 422-432 (697)
157 PF05529 Bap31: B-cell recepto 86.6 4.9 0.00011 36.6 9.0 38 294-331 152-189 (192)
158 PF09755 DUF2046: Uncharacteri 86.6 2.2 4.8E-05 42.7 7.1 34 290-323 28-61 (310)
159 PF06216 RTBV_P46: Rice tungro 86.6 3.3 7.2E-05 40.7 8.2 45 286-330 68-112 (389)
160 PRK03992 proteasome-activating 86.6 2 4.4E-05 43.4 7.1 61 284-344 3-64 (389)
161 COG4467 Regulator of replicati 86.6 3.1 6.7E-05 35.9 7.0 50 286-337 5-54 (114)
162 PF05278 PEARLI-4: Arabidopsis 86.5 12 0.00026 36.9 12.0 49 281-329 206-254 (269)
163 PF07716 bZIP_2: Basic region 86.4 9.4 0.0002 28.1 8.8 24 299-322 28-51 (54)
164 PF15556 Zwint: ZW10 interacto 86.2 12 0.00026 35.8 11.4 60 266-325 118-177 (252)
165 PF13870 DUF4201: Domain of un 86.2 11 0.00023 34.0 10.8 59 282-340 91-149 (177)
166 PF04977 DivIC: Septum formati 86.2 3.2 6.9E-05 31.9 6.5 38 299-336 20-58 (80)
167 PHA02562 46 endonuclease subun 86.1 7.4 0.00016 40.4 11.1 31 288-318 364-394 (562)
168 PF08232 Striatin: Striatin fa 86.0 5.3 0.00012 35.1 8.5 55 282-336 25-79 (134)
169 KOG4196 bZIP transcription fac 85.9 4.2 9.1E-05 36.1 7.7 59 270-331 51-109 (135)
170 PTZ00454 26S protease regulato 85.9 3.1 6.6E-05 42.6 8.0 49 296-344 29-78 (398)
171 PF15035 Rootletin: Ciliary ro 85.9 3.4 7.5E-05 38.2 7.6 40 289-328 74-113 (182)
172 PRK14162 heat shock protein Gr 85.8 2.2 4.7E-05 40.0 6.3 22 292-313 49-70 (194)
173 PF10211 Ax_dynein_light: Axon 85.8 7.1 0.00015 36.1 9.6 31 281-311 126-156 (189)
174 PF14662 CCDC155: Coiled-coil 85.7 3.7 8E-05 38.6 7.7 50 281-330 66-115 (193)
175 PF11180 DUF2968: Protein of u 85.7 13 0.00027 35.1 11.1 85 257-344 102-186 (192)
176 KOG1103 Predicted coiled-coil 85.4 3.6 7.7E-05 42.2 8.0 61 271-331 227-287 (561)
177 PF13851 GAS: Growth-arrest sp 85.4 16 0.00034 34.2 11.8 28 302-329 92-119 (201)
178 KOG0977 Nuclear envelope prote 85.4 7.2 0.00016 41.9 10.6 61 266-326 132-192 (546)
179 PF04111 APG6: Autophagy prote 85.2 16 0.00034 36.4 12.4 16 312-327 108-123 (314)
180 PF09789 DUF2353: Uncharacteri 84.9 8.2 0.00018 38.8 10.2 47 285-331 68-114 (319)
181 PF04871 Uso1_p115_C: Uso1 / p 84.6 17 0.00036 32.1 11.0 49 282-330 62-111 (136)
182 PF04728 LPP: Lipoprotein leuc 84.5 5.6 0.00012 30.5 6.9 40 289-328 3-42 (56)
183 KOG2391 Vacuolar sorting prote 84.4 4.7 0.0001 40.9 8.3 48 281-328 231-278 (365)
184 PRK14158 heat shock protein Gr 84.4 3.1 6.6E-05 39.0 6.6 21 285-305 57-77 (194)
185 PF13118 DUF3972: Protein of u 84.3 4.1 9E-05 35.9 7.0 46 284-329 80-125 (126)
186 PF07407 Seadorna_VP6: Seadorn 84.2 1.8 4E-05 43.8 5.3 22 294-315 37-58 (420)
187 PRK13729 conjugal transfer pil 84.2 3.5 7.6E-05 43.5 7.6 51 281-331 82-132 (475)
188 PF01166 TSC22: TSC-22/dip/bun 83.9 1.2 2.6E-05 34.4 3.0 28 283-310 15-42 (59)
189 TIGR03545 conserved hypothetic 83.7 7.1 0.00015 41.9 9.8 69 258-326 167-242 (555)
190 PF10805 DUF2730: Protein of u 83.7 13 0.00029 31.2 9.6 50 280-329 47-98 (106)
191 smart00340 HALZ homeobox assoc 83.7 2.1 4.6E-05 31.1 4.0 26 306-331 8-33 (44)
192 COG1792 MreC Cell shape-determ 83.6 3.3 7.1E-05 40.7 6.8 49 280-332 64-112 (284)
193 KOG2010 Double stranded RNA bi 83.3 4.9 0.00011 40.8 7.8 48 281-328 153-200 (405)
194 TIGR02231 conserved hypothetic 83.2 14 0.00031 38.7 11.8 48 285-332 127-174 (525)
195 PF07558 Shugoshin_N: Shugoshi 83.2 1.3 2.9E-05 32.2 2.9 34 293-326 11-44 (46)
196 PF15058 Speriolin_N: Sperioli 83.1 2.8 6E-05 39.4 5.7 38 284-329 7-44 (200)
197 COG1382 GimC Prefoldin, chaper 83.1 5.6 0.00012 34.7 7.2 41 279-319 67-107 (119)
198 KOG0946 ER-Golgi vesicle-tethe 83.0 11 0.00025 42.2 11.1 63 268-330 657-719 (970)
199 cd07596 BAR_SNX The Bin/Amphip 82.7 17 0.00037 32.3 10.6 62 265-329 114-182 (218)
200 PRK14148 heat shock protein Gr 82.7 4.1 8.9E-05 38.2 6.7 57 285-341 43-99 (195)
201 PRK00736 hypothetical protein; 82.5 6.5 0.00014 30.8 6.8 53 286-340 2-54 (68)
202 PF10205 KLRAQ: Predicted coil 82.4 14 0.00029 31.6 9.1 27 285-311 43-69 (102)
203 PF10224 DUF2205: Predicted co 82.4 6.7 0.00015 32.0 7.0 35 283-317 31-65 (80)
204 PRK14160 heat shock protein Gr 82.4 4.7 0.0001 38.3 7.1 60 285-344 64-123 (211)
205 PRK14127 cell division protein 82.4 3.3 7.2E-05 35.5 5.5 41 282-322 30-70 (109)
206 PRK14140 heat shock protein Gr 82.4 3.2 6.9E-05 38.8 5.9 55 284-338 39-93 (191)
207 PRK09039 hypothetical protein; 82.4 16 0.00035 36.7 11.3 23 291-313 139-161 (343)
208 PF14282 FlxA: FlxA-like prote 82.3 5.8 0.00013 33.4 6.9 46 285-330 29-78 (106)
209 PF10146 zf-C4H2: Zinc finger- 82.3 20 0.00044 34.4 11.4 44 288-331 59-102 (230)
210 PF09304 Cortex-I_coil: Cortex 82.2 30 0.00064 29.8 11.1 53 277-329 11-63 (107)
211 PF12709 Kinetocho_Slk19: Cent 82.1 4.7 0.0001 33.4 6.1 42 288-329 33-75 (87)
212 PF02403 Seryl_tRNA_N: Seryl-t 82.1 16 0.00035 30.0 9.5 30 300-329 71-100 (108)
213 KOG4797 Transcriptional regula 81.9 3.2 7E-05 35.9 5.2 25 299-323 70-94 (123)
214 PF13815 Dzip-like_N: Iguana/D 81.7 5.5 0.00012 34.0 6.6 39 292-330 76-114 (118)
215 PF15397 DUF4618: Domain of un 81.6 21 0.00046 35.0 11.3 72 258-331 141-221 (258)
216 KOG2391 Vacuolar sorting prote 81.5 12 0.00025 38.2 9.7 65 255-321 214-278 (365)
217 PF11500 Cut12: Spindle pole b 81.4 15 0.00032 33.4 9.5 55 260-314 83-137 (152)
218 PF03980 Nnf1: Nnf1 ; InterPr 81.3 2.4 5.2E-05 35.3 4.3 31 280-310 78-108 (109)
219 PF08961 DUF1875: Domain of un 81.2 0.48 1E-05 45.3 0.0 44 279-322 119-162 (243)
220 PF05278 PEARLI-4: Arabidopsis 81.0 25 0.00054 34.7 11.7 47 284-330 202-248 (269)
221 PF05667 DUF812: Protein of un 81.0 5.6 0.00012 43.0 7.9 43 284-326 337-379 (594)
222 TIGR02977 phageshock_pspA phag 80.9 13 0.00029 34.8 9.5 51 281-331 98-148 (219)
223 KOG0982 Centrosomal protein Nu 80.6 15 0.00032 38.6 10.3 55 277-333 280-334 (502)
224 KOG0980 Actin-binding protein 80.5 15 0.00033 41.6 11.0 75 264-340 448-522 (980)
225 PF05812 Herpes_BLRF2: Herpesv 80.4 2.9 6.3E-05 36.4 4.5 30 280-309 1-30 (118)
226 PRK14161 heat shock protein Gr 80.3 4.9 0.00011 37.1 6.3 51 291-341 28-78 (178)
227 PF15290 Syntaphilin: Golgi-lo 80.2 7.8 0.00017 38.5 7.9 24 270-294 78-101 (305)
228 PRK14153 heat shock protein Gr 80.1 3.9 8.4E-05 38.3 5.6 18 286-303 51-68 (194)
229 PF01486 K-box: K-box region; 80.1 29 0.00063 28.4 10.3 46 282-327 49-99 (100)
230 PF07889 DUF1664: Protein of u 80.1 19 0.0004 31.7 9.5 50 281-330 67-116 (126)
231 KOG4001 Axonemal dynein light 79.9 22 0.00047 34.2 10.4 26 307-332 232-257 (259)
232 PTZ00454 26S protease regulato 79.7 7.5 0.00016 39.8 8.0 38 287-324 27-64 (398)
233 PF10226 DUF2216: Uncharacteri 79.6 9.3 0.0002 35.9 7.8 29 302-330 114-142 (195)
234 PF11365 DUF3166: Protein of u 79.4 6.3 0.00014 33.2 6.1 44 284-327 3-46 (96)
235 KOG0804 Cytoplasmic Zn-finger 79.3 13 0.00027 39.3 9.4 78 265-344 368-453 (493)
236 PF12808 Mto2_bdg: Micro-tubul 79.2 5.3 0.00012 30.1 5.0 32 279-310 19-50 (52)
237 TIGR03752 conj_TIGR03752 integ 79.1 17 0.00037 38.5 10.4 24 307-330 113-136 (472)
238 TIGR02209 ftsL_broad cell divi 79.1 6.9 0.00015 30.7 6.0 31 279-309 28-58 (85)
239 PF04880 NUDE_C: NUDE protein, 79.1 1.6 3.5E-05 40.0 2.7 29 298-327 26-54 (166)
240 PF07558 Shugoshin_N: Shugoshi 79.1 1.9 4.2E-05 31.4 2.6 43 262-305 2-44 (46)
241 PF00038 Filament: Intermediat 79.0 40 0.00086 32.5 12.4 39 291-329 211-249 (312)
242 PRK14145 heat shock protein Gr 79.0 6.7 0.00014 36.9 6.8 21 293-313 56-76 (196)
243 PF04859 DUF641: Plant protein 79.0 6.3 0.00014 34.9 6.2 42 284-325 89-130 (131)
244 COG4717 Uncharacterized conser 79.0 13 0.00028 42.0 9.9 72 270-341 729-819 (984)
245 KOG0933 Structural maintenance 78.7 19 0.00041 41.4 11.2 52 279-330 812-863 (1174)
246 PF10669 Phage_Gp23: Protein g 78.7 29 0.00063 29.7 9.8 22 254-275 48-69 (121)
247 PF13863 DUF4200: Domain of un 78.6 22 0.00048 29.8 9.3 29 301-329 79-107 (126)
248 KOG2077 JNK/SAPK-associated pr 78.6 4.8 0.0001 43.6 6.3 47 285-331 325-371 (832)
249 PF06210 DUF1003: Protein of u 78.5 11 0.00024 32.1 7.4 53 265-322 54-106 (108)
250 smart00340 HALZ homeobox assoc 78.4 5 0.00011 29.2 4.4 26 284-309 7-32 (44)
251 TIGR00606 rad50 rad50. This fa 78.4 18 0.00038 42.4 11.4 18 272-289 847-864 (1311)
252 PF12718 Tropomyosin_1: Tropom 78.2 12 0.00025 33.3 7.8 34 278-311 31-64 (143)
253 PHA03162 hypothetical protein; 78.1 1.6 3.4E-05 38.8 2.2 28 279-306 10-37 (135)
254 smart00787 Spc7 Spc7 kinetocho 78.1 36 0.00078 34.0 12.0 47 283-329 205-251 (312)
255 PF10205 KLRAQ: Predicted coil 78.0 15 0.00033 31.3 8.0 40 291-330 28-67 (102)
256 PF04201 TPD52: Tumour protein 77.6 13 0.00027 34.2 7.9 20 321-340 106-125 (162)
257 PF03670 UPF0184: Uncharacteri 77.5 17 0.00037 29.9 7.9 47 284-330 28-74 (83)
258 PRK11546 zraP zinc resistance 77.3 8.9 0.00019 34.5 6.8 24 278-301 57-80 (143)
259 PF14645 Chibby: Chibby family 77.3 8.7 0.00019 33.1 6.5 42 285-326 74-115 (116)
260 PRK14157 heat shock protein Gr 77.3 6.7 0.00015 37.7 6.4 13 278-290 101-113 (227)
261 PF15030 DUF4527: Protein of u 77.2 26 0.00056 34.4 10.2 28 257-284 11-38 (277)
262 KOG3819 Uncharacterized conser 77.2 23 0.00049 37.5 10.5 78 255-332 48-175 (513)
263 COG2900 SlyX Uncharacterized p 77.1 16 0.00035 29.3 7.4 57 284-342 3-59 (72)
264 PF15070 GOLGA2L5: Putative go 77.1 16 0.00035 39.8 9.9 52 279-330 119-173 (617)
265 PF10482 CtIP_N: Tumour-suppre 77.0 14 0.0003 32.2 7.6 17 281-297 13-29 (120)
266 PF11544 Spc42p: Spindle pole 77.0 20 0.00043 29.1 8.0 35 290-324 20-54 (76)
267 PF11365 DUF3166: Protein of u 76.8 9.2 0.0002 32.2 6.3 39 292-330 4-42 (96)
268 PF15035 Rootletin: Ciliary ro 76.8 13 0.00028 34.4 7.9 30 287-316 86-115 (182)
269 PRK14160 heat shock protein Gr 76.7 11 0.00024 35.8 7.6 44 284-327 56-99 (211)
270 PF14988 DUF4515: Domain of un 76.6 42 0.00092 31.6 11.4 48 284-331 151-198 (206)
271 PHA03155 hypothetical protein; 76.6 3.3 7E-05 35.9 3.7 25 283-307 9-33 (115)
272 PRK12705 hypothetical protein; 76.5 38 0.00082 36.2 12.3 45 286-330 92-136 (508)
273 PF15136 UPF0449: Uncharacteri 76.4 13 0.00029 31.4 7.1 40 289-328 57-96 (97)
274 PF05911 DUF869: Plant protein 76.3 20 0.00043 40.1 10.5 64 281-344 91-175 (769)
275 PF11180 DUF2968: Protein of u 76.2 27 0.00058 33.0 9.8 30 288-317 153-182 (192)
276 PF10779 XhlA: Haemolysin XhlA 76.1 14 0.0003 28.8 6.8 39 285-323 16-54 (71)
277 PF13935 Ead_Ea22: Ead/Ea22-li 76.0 29 0.00063 30.4 9.6 48 282-329 90-138 (139)
278 PF13935 Ead_Ea22: Ead/Ea22-li 75.9 19 0.0004 31.7 8.4 33 280-312 79-113 (139)
279 PRK04863 mukB cell division pr 75.9 27 0.00058 41.9 12.0 17 263-279 323-339 (1486)
280 PRK02224 chromosome segregatio 75.8 31 0.00067 38.2 11.9 7 285-291 512-518 (880)
281 PF04568 IATP: Mitochondrial A 75.8 16 0.00035 30.9 7.6 42 270-311 57-98 (100)
282 PF08537 NBP1: Fungal Nap bind 75.7 26 0.00057 35.4 10.2 23 261-283 122-144 (323)
283 TIGR02231 conserved hypothetic 75.7 30 0.00064 36.4 11.2 47 291-339 126-172 (525)
284 KOG0249 LAR-interacting protei 75.6 23 0.00051 39.4 10.5 41 290-330 217-257 (916)
285 KOG0288 WD40 repeat protein Ti 75.3 18 0.00039 37.8 9.2 44 266-309 27-75 (459)
286 PF05557 MAD: Mitotic checkpoi 75.2 13 0.00028 40.8 8.7 51 283-333 511-589 (722)
287 KOG2264 Exostosin EXT1L [Signa 75.1 28 0.0006 38.1 10.7 44 286-329 104-147 (907)
288 PRK10698 phage shock protein P 74.8 42 0.00091 31.8 11.0 54 282-335 99-152 (222)
289 PF10883 DUF2681: Protein of u 74.8 13 0.00028 30.8 6.6 47 291-342 32-82 (87)
290 PRK15396 murein lipoprotein; P 74.8 21 0.00046 29.0 7.7 46 283-328 26-71 (78)
291 TIGR02680 conserved hypothetic 74.7 33 0.00072 40.6 12.3 56 282-337 276-331 (1353)
292 PF10481 CENP-F_N: Cenp-F N-te 74.6 25 0.00055 35.0 9.6 75 253-327 3-91 (307)
293 PF05837 CENP-H: Centromere pr 74.5 10 0.00023 31.9 6.2 25 285-309 20-44 (106)
294 cd07596 BAR_SNX The Bin/Amphip 74.5 53 0.0012 29.2 11.2 56 274-329 109-171 (218)
295 COG2919 Septum formation initi 74.4 13 0.00027 31.9 6.8 34 299-332 53-86 (117)
296 TIGR03495 phage_LysB phage lys 74.4 48 0.001 29.6 10.5 39 301-340 73-111 (135)
297 PRK03992 proteasome-activating 74.3 9.8 0.00021 38.5 7.1 41 284-324 10-50 (389)
298 PF07412 Geminin: Geminin; In 74.3 18 0.00039 34.2 8.2 45 296-340 125-170 (200)
299 KOG0971 Microtubule-associated 74.3 25 0.00054 40.2 10.5 31 299-329 328-358 (1243)
300 KOG0999 Microtubule-associated 74.2 28 0.0006 37.9 10.4 40 290-329 171-213 (772)
301 PF00038 Filament: Intermediat 74.2 46 0.001 32.1 11.4 40 270-309 211-250 (312)
302 KOG1853 LIS1-interacting prote 74.2 31 0.00067 34.2 10.0 48 282-329 133-183 (333)
303 TIGR00414 serS seryl-tRNA synt 74.1 28 0.0006 36.0 10.3 29 300-328 73-101 (418)
304 TIGR03185 DNA_S_dndD DNA sulfu 74.0 32 0.00069 37.2 11.2 46 283-328 422-467 (650)
305 PF09738 DUF2051: Double stran 74.0 13 0.00029 37.0 7.7 50 282-331 112-161 (302)
306 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.8 14 0.0003 32.0 6.9 74 256-330 41-118 (132)
307 KOG0249 LAR-interacting protei 73.7 27 0.00059 39.0 10.4 44 281-324 215-258 (916)
308 PF14817 HAUS5: HAUS augmin-li 73.7 13 0.00027 40.8 8.0 28 286-313 83-110 (632)
309 KOG4797 Transcriptional regula 73.6 7 0.00015 33.8 4.9 28 282-309 67-94 (123)
310 PF10146 zf-C4H2: Zinc finger- 73.3 18 0.00039 34.8 8.2 52 279-330 29-87 (230)
311 PF12999 PRKCSH-like: Glucosid 73.1 22 0.00048 33.0 8.4 33 278-310 142-174 (176)
312 PRK05431 seryl-tRNA synthetase 73.0 32 0.0007 35.5 10.5 26 301-326 71-96 (425)
313 COG4942 Membrane-bound metallo 73.0 27 0.00059 36.5 9.9 45 278-322 62-106 (420)
314 PF12329 TMF_DNA_bd: TATA elem 73.0 16 0.00034 29.1 6.5 40 288-327 32-71 (74)
315 COG1196 Smc Chromosome segrega 72.8 32 0.00069 39.9 11.5 41 285-325 442-482 (1163)
316 KOG4643 Uncharacterized coiled 72.7 12 0.00025 43.0 7.6 66 279-344 506-572 (1195)
317 PF06810 Phage_GP20: Phage min 72.6 30 0.00066 31.1 9.1 34 280-313 32-68 (155)
318 KOG0250 DNA repair protein RAD 72.6 36 0.00078 39.4 11.4 49 282-330 372-421 (1074)
319 COG1730 GIM5 Predicted prefold 72.5 18 0.00039 32.5 7.5 24 300-323 112-135 (145)
320 KOG3248 Transcription factor T 72.3 13 0.00029 37.9 7.3 53 26-81 72-128 (421)
321 PHA03162 hypothetical protein; 72.0 5.6 0.00012 35.4 4.1 29 305-333 15-43 (135)
322 KOG2891 Surface glycoprotein [ 71.9 41 0.00089 33.8 10.4 19 274-292 354-372 (445)
323 PRK13922 rod shape-determining 71.8 16 0.00034 35.1 7.5 36 282-317 69-107 (276)
324 PF04871 Uso1_p115_C: Uso1 / p 71.8 71 0.0015 28.2 11.1 63 278-342 51-114 (136)
325 PF04899 MbeD_MobD: MbeD/MobD 71.7 19 0.00041 28.6 6.6 9 297-305 43-51 (70)
326 KOG0483 Transcription factor H 71.7 6.6 0.00014 37.0 4.7 29 299-327 115-143 (198)
327 PF14282 FlxA: FlxA-like prote 71.7 18 0.0004 30.4 7.0 23 279-301 48-70 (106)
328 COG1196 Smc Chromosome segrega 71.7 33 0.00071 39.8 11.2 13 28-40 528-540 (1163)
329 PF12999 PRKCSH-like: Glucosid 71.7 34 0.00073 31.8 9.2 10 208-217 89-98 (176)
330 PF07200 Mod_r: Modifier of ru 71.6 21 0.00046 31.0 7.7 49 266-315 40-88 (150)
331 PF04012 PspA_IM30: PspA/IM30 71.6 29 0.00064 32.0 9.0 47 284-330 100-146 (221)
332 PF07407 Seadorna_VP6: Seadorn 71.6 13 0.00028 37.9 6.9 11 284-294 48-58 (420)
333 PRK14872 rod shape-determining 71.6 18 0.00038 36.8 8.0 38 290-327 58-98 (337)
334 PF13514 AAA_27: AAA domain 71.6 45 0.00098 38.4 12.2 50 292-341 892-941 (1111)
335 PF08232 Striatin: Striatin fa 71.5 28 0.00061 30.6 8.4 61 264-324 14-74 (134)
336 COG4420 Predicted membrane pro 71.3 23 0.00049 33.4 8.0 36 299-334 137-172 (191)
337 PF05911 DUF869: Plant protein 71.1 20 0.00044 40.1 9.0 66 276-341 128-222 (769)
338 COG2433 Uncharacterized conser 71.1 38 0.00082 37.1 10.7 27 283-309 437-463 (652)
339 PF06698 DUF1192: Protein of u 70.9 14 0.00031 28.5 5.6 25 284-308 23-47 (59)
340 PF04849 HAP1_N: HAP1 N-termin 70.8 34 0.00073 34.4 9.7 47 282-328 241-287 (306)
341 PF09789 DUF2353: Uncharacteri 70.8 32 0.00069 34.7 9.6 35 297-331 66-100 (319)
342 PF10506 MCC-bdg_PDZ: PDZ doma 70.8 16 0.00035 28.8 6.0 38 286-323 2-39 (67)
343 PF07058 Myosin_HC-like: Myosi 70.8 7.9 0.00017 39.0 5.2 49 291-341 2-50 (351)
344 KOG0288 WD40 repeat protein Ti 70.7 48 0.001 34.8 10.9 40 288-327 33-72 (459)
345 TIGR01554 major_cap_HK97 phage 70.7 24 0.00051 35.4 8.8 26 283-308 35-60 (378)
346 PF15556 Zwint: ZW10 interacto 70.7 60 0.0013 31.2 10.8 64 267-330 112-175 (252)
347 PHA03011 hypothetical protein; 70.7 25 0.00053 30.3 7.4 45 283-327 65-116 (120)
348 PF04012 PspA_IM30: PspA/IM30 70.6 58 0.0013 30.0 10.8 54 286-339 95-148 (221)
349 PHA03161 hypothetical protein; 70.6 28 0.00061 31.6 8.2 39 270-310 44-82 (150)
350 PF09730 BicD: Microtubule-ass 70.4 40 0.00087 37.6 11.0 20 310-329 97-116 (717)
351 KOG0161 Myosin class II heavy 70.3 36 0.00078 41.8 11.3 67 266-332 1644-1710(1930)
352 COG1842 PspA Phage shock prote 70.2 91 0.002 29.9 12.1 43 286-328 96-138 (225)
353 KOG2236 Uncharacterized conser 70.2 7 0.00015 41.1 4.9 31 47-85 424-454 (483)
354 PF01920 Prefoldin_2: Prefoldi 70.1 14 0.00031 29.7 5.9 39 292-330 65-103 (106)
355 PF11544 Spc42p: Spindle pole 70.0 41 0.00088 27.4 8.2 46 285-330 8-53 (76)
356 PRK10361 DNA recombination pro 69.9 57 0.0012 34.7 11.6 21 287-307 65-85 (475)
357 PF08606 Prp19: Prp19/Pso4-lik 69.8 29 0.00064 27.7 7.3 46 284-329 10-69 (70)
358 PF10168 Nup88: Nuclear pore c 69.8 53 0.0012 36.5 11.9 8 78-86 272-279 (717)
359 PF05600 DUF773: Protein of un 69.8 20 0.00044 38.1 8.4 49 280-328 444-492 (507)
360 PF06810 Phage_GP20: Phage min 69.7 17 0.00036 32.7 6.7 40 281-320 26-68 (155)
361 PF13805 Pil1: Eisosome compon 69.5 36 0.00078 33.7 9.4 29 283-311 166-194 (271)
362 KOG1318 Helix loop helix trans 69.4 12 0.00026 39.0 6.4 34 281-314 289-322 (411)
363 KOG4370 Ral-GTPase effector RL 69.4 17 0.00038 38.1 7.5 57 284-340 408-464 (514)
364 COG4238 Murein lipoprotein [Ce 69.3 34 0.00073 27.9 7.5 48 282-329 25-72 (78)
365 COG2919 Septum formation initi 69.2 72 0.0016 27.2 11.5 44 284-327 52-95 (117)
366 PF07047 OPA3: Optic atrophy 3 69.1 11 0.00023 33.0 5.3 35 261-301 97-131 (134)
367 COG4372 Uncharacterized protei 69.0 72 0.0016 33.4 11.7 41 290-330 138-178 (499)
368 PF05667 DUF812: Protein of un 68.9 18 0.00039 39.3 7.9 48 282-329 328-375 (594)
369 TIGR03185 DNA_S_dndD DNA sulfu 68.9 63 0.0014 35.0 12.0 18 285-302 212-229 (650)
370 KOG0933 Structural maintenance 68.7 46 0.001 38.5 11.1 34 297-330 823-856 (1174)
371 TIGR03689 pup_AAA proteasome A 68.6 12 0.00026 39.9 6.4 46 294-339 6-52 (512)
372 TIGR03689 pup_AAA proteasome A 68.6 10 0.00022 40.4 5.9 42 284-325 3-44 (512)
373 KOG0709 CREB/ATF family transc 68.5 15 0.00032 38.8 6.9 41 291-331 274-314 (472)
374 PF07334 IFP_35_N: Interferon- 68.5 10 0.00022 30.8 4.5 26 292-317 3-28 (76)
375 PF10779 XhlA: Haemolysin XhlA 68.4 42 0.0009 26.1 7.9 43 287-329 4-46 (71)
376 KOG0239 Kinesin (KAR3 subfamil 68.3 56 0.0012 36.1 11.6 18 317-334 300-317 (670)
377 PF09766 FimP: Fms-interacting 68.3 24 0.00052 35.7 8.3 53 276-328 102-154 (355)
378 PRK14161 heat shock protein Gr 68.3 23 0.0005 32.7 7.5 24 282-305 33-56 (178)
379 PRK03947 prefoldin subunit alp 68.1 24 0.00052 30.4 7.2 29 286-314 105-133 (140)
380 PRK14148 heat shock protein Gr 68.1 18 0.00039 34.0 6.8 29 281-309 53-81 (195)
381 PRK13923 putative spore coat p 68.1 19 0.00041 33.3 6.8 62 280-343 57-149 (170)
382 PF15254 CCDC14: Coiled-coil d 68.0 39 0.00084 38.0 10.1 25 301-325 453-477 (861)
383 PF14775 NYD-SP28_assoc: Sperm 67.9 43 0.00093 25.7 7.7 36 292-328 23-58 (60)
384 PF07047 OPA3: Optic atrophy 3 67.8 11 0.00024 33.0 5.0 34 276-309 99-132 (134)
385 PLN02678 seryl-tRNA synthetase 67.8 43 0.00094 35.2 10.2 29 300-328 75-103 (448)
386 KOG3650 Predicted coiled-coil 67.6 23 0.0005 30.4 6.6 42 278-319 66-107 (120)
387 PF05008 V-SNARE: Vesicle tran 67.5 35 0.00076 26.4 7.4 47 281-327 31-78 (79)
388 PF04340 DUF484: Protein of un 67.3 25 0.00053 32.8 7.6 24 285-308 43-66 (225)
389 KOG2483 Upstream transcription 67.3 38 0.00083 32.7 9.0 37 297-333 106-142 (232)
390 PF05622 HOOK: HOOK protein; 67.3 1.8 3.9E-05 47.3 0.0 59 253-311 295-354 (713)
391 TIGR01730 RND_mfp RND family e 67.3 31 0.00067 32.6 8.4 30 299-328 105-134 (322)
392 PF07200 Mod_r: Modifier of ru 67.3 40 0.00087 29.3 8.5 31 299-329 58-88 (150)
393 PF09730 BicD: Microtubule-ass 67.2 32 0.00069 38.3 9.4 42 290-331 98-142 (717)
394 PF08912 Rho_Binding: Rho Bind 67.1 26 0.00056 28.0 6.4 33 287-319 1-33 (69)
395 COG3879 Uncharacterized protei 67.0 24 0.00053 34.4 7.6 25 285-309 60-84 (247)
396 TIGR01242 26Sp45 26S proteasom 67.0 13 0.00027 37.0 5.9 49 296-344 6-55 (364)
397 PLN02320 seryl-tRNA synthetase 66.9 21 0.00045 38.1 7.7 23 304-326 138-160 (502)
398 COG4372 Uncharacterized protei 66.7 88 0.0019 32.8 11.8 36 281-316 136-171 (499)
399 TIGR01242 26Sp45 26S proteasom 66.7 13 0.00028 36.9 6.0 39 286-324 3-41 (364)
400 PRK04863 mukB cell division pr 66.7 58 0.0012 39.2 12.0 33 290-322 363-395 (1486)
401 PHA03155 hypothetical protein; 66.6 8.3 0.00018 33.5 3.9 29 305-333 10-38 (115)
402 KOG0996 Structural maintenance 66.4 52 0.0011 38.6 11.0 55 275-329 535-589 (1293)
403 KOG0999 Microtubule-associated 66.3 40 0.00087 36.7 9.6 45 289-333 149-193 (772)
404 PTZ00361 26 proteosome regulat 66.3 15 0.00033 38.3 6.5 60 276-344 56-116 (438)
405 PF05812 Herpes_BLRF2: Herpesv 66.2 9.5 0.00021 33.3 4.2 28 304-331 4-31 (118)
406 PF13094 CENP-Q: CENP-Q, a CEN 66.2 25 0.00055 31.1 7.1 49 282-330 41-89 (160)
407 PRK10963 hypothetical protein; 66.1 18 0.00038 34.1 6.4 27 285-311 54-83 (223)
408 PRK14143 heat shock protein Gr 66.1 16 0.00035 35.3 6.2 8 287-294 79-86 (238)
409 COG1340 Uncharacterized archae 66.1 1E+02 0.0022 30.9 11.8 6 256-261 9-14 (294)
410 KOG0239 Kinesin (KAR3 subfamil 66.1 37 0.00081 37.4 9.7 45 284-328 243-287 (670)
411 PF03245 Phage_lysis: Bacterio 66.0 62 0.0013 28.0 9.3 49 280-328 12-60 (125)
412 PF14916 CCDC92: Coiled-coil d 66.0 15 0.00033 28.4 4.9 40 283-325 4-43 (60)
413 PF03980 Nnf1: Nnf1 ; InterPr 65.8 43 0.00093 27.8 8.0 31 300-330 77-107 (109)
414 PRK05431 seryl-tRNA synthetase 65.8 29 0.00062 35.9 8.4 35 294-328 71-105 (425)
415 KOG4593 Mitotic checkpoint pro 65.6 39 0.00084 37.5 9.5 63 269-331 485-580 (716)
416 PRK10636 putative ABC transpor 65.5 30 0.00064 37.4 8.8 24 282-305 563-586 (638)
417 PF15619 Lebercilin: Ciliary p 65.5 46 0.001 31.1 9.0 66 272-339 8-74 (194)
418 PF06216 RTBV_P46: Rice tungro 65.4 17 0.00037 36.0 6.2 48 267-317 66-113 (389)
419 PF10234 Cluap1: Clusterin-ass 65.4 90 0.002 30.8 11.3 79 252-330 138-238 (267)
420 cd07666 BAR_SNX7 The Bin/Amphi 65.2 32 0.00069 33.3 8.1 52 276-330 157-208 (243)
421 PF11382 DUF3186: Protein of u 65.1 19 0.00042 35.6 6.7 40 283-322 33-72 (308)
422 PF10828 DUF2570: Protein of u 65.0 84 0.0018 26.5 9.9 40 285-324 35-74 (110)
423 PF04899 MbeD_MobD: MbeD/MobD 65.0 44 0.00095 26.6 7.4 38 293-330 25-62 (70)
424 COG1729 Uncharacterized protei 65.0 18 0.00038 35.6 6.3 50 283-333 57-106 (262)
425 COG1340 Uncharacterized archae 65.0 1E+02 0.0022 30.9 11.6 41 283-323 49-89 (294)
426 PF03961 DUF342: Protein of un 64.9 31 0.00067 35.6 8.5 33 297-329 376-408 (451)
427 PF04999 FtsL: Cell division p 64.9 22 0.00048 28.8 6.0 33 291-323 37-69 (97)
428 KOG2129 Uncharacterized conser 64.4 9.5 0.00021 40.0 4.5 39 285-323 46-84 (552)
429 PRK14156 heat shock protein Gr 64.4 17 0.00036 33.7 5.7 52 291-342 36-87 (177)
430 PRK13182 racA polar chromosome 64.4 65 0.0014 29.7 9.6 61 282-344 85-150 (175)
431 PF15236 CCDC66: Coiled-coil d 64.3 1.2E+02 0.0025 27.8 14.1 28 249-276 40-67 (157)
432 cd00632 Prefoldin_beta Prefold 64.3 36 0.00078 28.2 7.3 38 293-330 67-104 (105)
433 PLN02678 seryl-tRNA synthetase 64.3 32 0.00069 36.1 8.4 30 313-344 81-110 (448)
434 PF14916 CCDC92: Coiled-coil d 64.1 14 0.00029 28.7 4.3 46 287-335 1-46 (60)
435 PF06098 Radial_spoke_3: Radia 64.0 1.3E+02 0.0029 30.0 12.3 33 254-286 149-181 (291)
436 KOG0243 Kinesin-like protein [ 64.0 71 0.0015 37.0 11.5 24 281-304 447-470 (1041)
437 PLN02320 seryl-tRNA synthetase 64.0 49 0.0011 35.4 9.8 29 314-344 141-169 (502)
438 PF02388 FemAB: FemAB family; 63.9 32 0.00069 35.2 8.2 23 282-304 242-264 (406)
439 KOG0946 ER-Golgi vesicle-tethe 63.9 25 0.00054 39.7 7.8 48 282-329 650-697 (970)
440 COG0576 GrpE Molecular chapero 63.9 18 0.00039 33.7 5.9 50 290-339 44-93 (193)
441 PRK10361 DNA recombination pro 63.9 1E+02 0.0022 32.8 12.0 23 283-305 68-90 (475)
442 PF01486 K-box: K-box region; 63.9 36 0.00079 27.9 7.2 34 272-305 61-98 (100)
443 KOG4360 Uncharacterized coiled 63.8 24 0.00053 37.8 7.4 46 285-330 222-267 (596)
444 KOG4687 Uncharacterized coiled 63.8 69 0.0015 32.2 10.1 51 281-331 50-118 (389)
445 PHA02109 hypothetical protein 63.8 20 0.00044 33.6 6.1 35 280-314 191-225 (233)
446 PF12777 MT: Microtubule-bindi 63.8 34 0.00074 34.2 8.3 42 273-314 233-274 (344)
447 PRK09343 prefoldin subunit bet 63.6 38 0.00083 29.1 7.5 40 299-340 74-113 (121)
448 PF06818 Fez1: Fez1; InterPro 63.6 16 0.00035 34.6 5.6 53 278-330 76-151 (202)
449 PRK09413 IS2 repressor TnpA; R 63.5 17 0.00037 30.8 5.3 32 296-327 71-102 (121)
450 PF00261 Tropomyosin: Tropomyo 63.4 1.3E+02 0.0029 28.3 11.8 43 285-327 172-214 (237)
451 PF10359 Fmp27_WPPW: RNA pol I 63.3 35 0.00076 35.8 8.6 30 301-330 198-227 (475)
452 PF03670 UPF0184: Uncharacteri 63.2 30 0.00065 28.5 6.3 42 282-323 33-74 (83)
453 cd00632 Prefoldin_beta Prefold 63.2 33 0.00072 28.4 6.9 37 285-321 66-102 (105)
454 PF14915 CCDC144C: CCDC144C pr 63.2 74 0.0016 32.0 10.2 65 270-334 181-245 (305)
455 KOG4674 Uncharacterized conser 63.1 64 0.0014 39.5 11.3 74 257-330 811-885 (1822)
456 PHA00728 hypothetical protein 63.0 8.8 0.00019 33.9 3.4 46 289-337 5-50 (151)
457 KOG2072 Translation initiation 63.0 63 0.0014 36.7 10.6 69 262-330 609-690 (988)
458 TIGR02338 gimC_beta prefoldin, 63.0 37 0.0008 28.4 7.1 13 312-324 83-95 (110)
459 PF03961 DUF342: Protein of un 62.9 47 0.001 34.3 9.3 50 281-330 347-402 (451)
460 PF07989 Microtub_assoc: Micro 62.9 34 0.00073 27.4 6.5 31 299-329 39-69 (75)
461 PF04642 DUF601: Protein of un 62.6 40 0.00087 33.3 8.1 84 251-334 186-276 (311)
462 PRK10698 phage shock protein P 62.6 1.4E+02 0.0029 28.4 11.7 71 259-329 53-139 (222)
463 PF06428 Sec2p: GDP/GTP exchan 62.5 31 0.00068 29.1 6.6 80 261-342 1-81 (100)
464 KOG3335 Predicted coiled-coil 62.4 33 0.00071 32.1 7.2 70 276-352 91-160 (181)
465 PF07246 Phlebovirus_NSM: Phle 62.4 59 0.0013 32.1 9.3 83 256-342 151-239 (264)
466 PF14389 Lzipper-MIP1: Leucine 62.3 69 0.0015 26.2 8.4 63 268-330 1-81 (88)
467 cd07429 Cby_like Chibby, a nuc 62.2 17 0.00037 31.2 5.0 37 282-318 72-108 (108)
468 KOG4643 Uncharacterized coiled 62.2 60 0.0013 37.6 10.4 69 261-329 373-441 (1195)
469 KOG0995 Centromere-associated 62.1 58 0.0013 35.4 9.9 74 257-330 248-321 (581)
470 PRK06835 DNA replication prote 62.1 67 0.0014 32.2 10.0 72 254-325 1-87 (329)
471 PRK10929 putative mechanosensi 62.1 66 0.0014 37.6 11.1 82 259-342 204-309 (1109)
472 PF07851 TMPIT: TMPIT-like pro 62.0 37 0.0008 34.4 8.1 59 281-341 3-61 (330)
473 cd00890 Prefoldin Prefoldin is 62.0 29 0.00063 28.9 6.4 39 284-322 89-127 (129)
474 KOG0161 Myosin class II heavy 61.9 74 0.0016 39.3 11.7 73 257-329 1431-1503(1930)
475 PF12711 Kinesin-relat_1: Kine 61.8 50 0.0011 27.3 7.5 48 281-330 23-83 (86)
476 PF12128 DUF3584: Protein of u 61.6 72 0.0016 37.3 11.4 71 256-326 464-534 (1201)
477 PF08961 DUF1875: Domain of un 61.4 2.7 5.8E-05 40.4 0.0 54 285-338 118-171 (243)
478 PF10168 Nup88: Nuclear pore c 61.4 90 0.002 34.7 11.6 72 257-328 554-625 (717)
479 PRK14150 heat shock protein Gr 61.3 25 0.00054 32.8 6.4 62 280-344 39-100 (193)
480 PF08581 Tup_N: Tup N-terminal 61.2 61 0.0013 26.3 7.8 52 281-332 24-79 (79)
481 PF10359 Fmp27_WPPW: RNA pol I 61.0 30 0.00065 36.3 7.6 50 281-330 169-227 (475)
482 PF06785 UPF0242: Uncharacteri 61.0 37 0.0008 34.8 7.8 58 274-331 60-120 (401)
483 KOG4603 TBP-1 interacting prot 60.8 17 0.00037 33.9 5.1 51 289-339 79-129 (201)
484 KOG2685 Cystoskeletal protein 60.8 1.3E+02 0.0027 31.7 11.7 81 255-337 45-125 (421)
485 PF08286 Spc24: Spc24 subunit 60.8 2.8 6E-05 35.7 -0.0 44 291-334 1-44 (118)
486 PF04420 CHD5: CHD5-like prote 60.7 40 0.00088 30.3 7.4 51 279-329 37-99 (161)
487 KOG0978 E3 ubiquitin ligase in 60.6 61 0.0013 36.0 10.0 70 268-337 559-628 (698)
488 PF14645 Chibby: Chibby family 60.5 21 0.00046 30.8 5.4 35 294-328 69-103 (116)
489 KOG0837 Transcriptional activa 60.3 52 0.0011 32.6 8.4 62 267-328 201-266 (279)
490 KOG2185 Predicted RNA-processi 60.3 33 0.00072 35.9 7.5 78 265-343 397-484 (486)
491 PF14257 DUF4349: Domain of un 60.2 37 0.0008 32.3 7.5 60 282-343 132-193 (262)
492 PF10234 Cluap1: Clusterin-ass 60.2 43 0.00094 33.0 8.0 50 281-330 168-217 (267)
493 PF09798 LCD1: DNA damage chec 60.2 33 0.00071 37.8 7.9 49 278-329 11-59 (654)
494 PRK15178 Vi polysaccharide exp 60.1 74 0.0016 33.4 10.2 83 256-338 248-349 (434)
495 cd00890 Prefoldin Prefoldin is 60.1 44 0.00096 27.8 7.2 45 287-331 85-129 (129)
496 KOG0612 Rho-associated, coiled 60.0 87 0.0019 37.0 11.3 76 254-329 470-548 (1317)
497 KOG3433 Protein involved in me 59.9 98 0.0021 29.3 9.8 72 257-328 91-162 (203)
498 PRK14127 cell division protein 59.8 44 0.00094 28.8 7.1 49 284-332 25-73 (109)
499 PF04201 TPD52: Tumour protein 59.7 30 0.00065 31.8 6.4 39 288-326 28-66 (162)
500 PRK09413 IS2 repressor TnpA; R 59.7 23 0.00049 30.1 5.4 37 283-319 72-108 (121)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1.8e-63 Score=451.64 Aligned_cols=165 Identities=59% Similarity=1.037 Sum_probs=153.4
Q ss_pred CCCCCCCCccCCCCCCCCC-CCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCC-CCCCCccccCCCCCCCCCCCCCC
Q 018605 1 MGTGEENTSAKTAKTASST-QEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVP 78 (353)
Q Consensus 1 mg~~e~~~~~k~~k~~s~~-~~~~~~~~~pdW~~smQAYy~~~~~pp~y~~s~va~-~~phPYmWg~q~~m~pPyGtp~P 78 (353)
||++|++|++|.+|+++++ ++|+++++||||+ +|||||++| ++|+||+++||+ |+|||||||+||+||||||||||
T Consensus 1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs-~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~p 78 (189)
T PF07777_consen 1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWS-AMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVP 78 (189)
T ss_pred CCCccCCcCCCCCCCCCCCcCCCCCCccCCccH-hhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCC
Confidence 9999999999999988864 5799999999999 599999999 889999999995 99999999999999999999999
Q ss_pred CccccCCCCcCCCCCCCC--------------CCCCCCCCCCC-CCCCCcccccccccccCCCCC-C----CCCCCcccc
Q 018605 79 YQAIYPPGGVYAHPSMAT--------------TPTAAPTNTEP-EGKGPEAKDRASAKKSKGTPG-G----KAGEIVKAT 138 (353)
Q Consensus 79 Y~a~yp~GgvyaHP~mp~--------------~~~~~~~~~e~-~~k~~~~k~~~~~kk~Kg~~G-~----k~~~~gk~s 138 (353)
|+||||||||||||+||+ ++..+++++|+ ++|++++|||+++|||||+|| + ||++.+|++
T Consensus 79 Y~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~ 158 (189)
T PF07777_consen 79 YPAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTS 158 (189)
T ss_pred CccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCccc
Confidence 999999999999999996 23357889999 599999999999999999994 3 889999999
Q ss_pred CCCCCCCCccCccccCCCCCCCCCCcCccc
Q 018605 139 SGSGNDGVSQSSAESGSDGSSDASDENGNQ 168 (353)
Q Consensus 139 ~~s~~~~~s~S~~esgs~gSsdgsd~ns~~ 168 (353)
++++|++.||| +||++||||||||+|+++
T Consensus 159 ~~s~n~~~Sqs-~eSgsegSSdgSD~Nt~~ 187 (189)
T PF07777_consen 159 GSSANDGSSQS-SESGSEGSSDGSDGNTNN 187 (189)
T ss_pred cCCCCCccCcc-ccccccccccCcCccccC
Confidence 99999999999 999999999999999876
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.49 E-value=1.4e-13 Score=105.09 Aligned_cols=64 Identities=50% Similarity=0.738 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 320 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~ 320 (353)
|++.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|+.++..|..+|.
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999999999999999999999999999999999999999999873
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.42 E-value=8.1e-13 Score=101.09 Aligned_cols=62 Identities=53% Similarity=0.748 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 259 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 320 (353)
Q Consensus 259 e~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~ 320 (353)
+.|+.||+++||+||++||.||++|+.+|+.+|..|+.+|..|+.++..|+.++..|+.+|.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999999999999999999998888888877763
No 4
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.35 E-value=2.3e-12 Score=124.26 Aligned_cols=63 Identities=35% Similarity=0.399 Sum_probs=57.8
Q ss_pred cchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 251 DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 251 ~~~~~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
..-..||.-+||+-|+++|||+||.||+|||+|+.+||.||..||.+|..|-+||+.|++-+.
T Consensus 281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 344678889999999999999999999999999999999999999999999999999987654
No 5
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.31 E-value=2e-11 Score=115.19 Aligned_cols=80 Identities=35% Similarity=0.463 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 018605 259 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 338 (353)
Q Consensus 259 e~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L 338 (353)
|+|-+|||++||.+|+.+|.|||+++++||.++..|..||+.|+.+.+.|+..++.|..+|.+|..+|+.+. +.+.+|
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~--~~l~~~ 144 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR--QELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHhh
Confidence 346899999999999999999999999999999999999999999999999999999999999999999887 555555
Q ss_pred hh
Q 018605 339 EQ 340 (353)
Q Consensus 339 ~~ 340 (353)
.+
T Consensus 145 ~~ 146 (292)
T KOG4005|consen 145 KQ 146 (292)
T ss_pred HH
Confidence 44
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.18 E-value=7.3e-11 Score=121.36 Aligned_cols=71 Identities=39% Similarity=0.465 Sum_probs=67.8
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 253 WIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 253 ~~~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
...|.+-.||+.|+++|||||..||+|||+|++.||.++..|..||+.|+.|...|++++..|..||..|+
T Consensus 273 ~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 273 VGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred CccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 34688899999999999999999999999999999999999999999999999999999999999999886
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.18 E-value=3.6e-11 Score=122.11 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 255 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 255 ~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
-+|+.+||.|||++|++||+.||+|||+|++.||.||....+||++|++++++|..++..|.++++.|...+.....
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an 321 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVAN 321 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc
Confidence 47899999999999999999999999999999999999999999999999999988888888888888777666544
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.14 E-value=2.7e-10 Score=84.59 Aligned_cols=50 Identities=50% Similarity=0.747 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
++.||+ +||+||++||.||++++.+|+.+|..|+.+|..|+.++..|+.+
T Consensus 5 ~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 5 KRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777 99999999999999999999999999999999999999888754
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.63 E-value=1.4e-07 Score=90.28 Aligned_cols=68 Identities=31% Similarity=0.477 Sum_probs=59.1
Q ss_pred CcchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 250 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 250 ~~~~~~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
.+.++++++.+|-+|.+++||++|++||.||.++|.+||.+|..|..+|..|-.++..|++...+++.
T Consensus 195 spid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~ 262 (279)
T KOG0837|consen 195 SPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ 262 (279)
T ss_pred CcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 44556788888888889999999999999999999999999999999999999999888766665554
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.44 E-value=3e-09 Score=87.03 Aligned_cols=67 Identities=33% Similarity=0.484 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 256 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 256 DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
+..++|..||+.+||.+|++||.||.+++++|+.++..|+.+...|..++..|+.++..|..++..|
T Consensus 25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4477899999999999999999999999999999998888888877777777766665555554443
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.29 E-value=4.1e-06 Score=81.54 Aligned_cols=57 Identities=32% Similarity=0.455 Sum_probs=49.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 262 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
..|.+++|+.||-|.|+||+++.|.|+.+++.|+.+|.+|+.++..|.+|+..|+.-
T Consensus 228 ~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 228 LRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467788889999999999999999999999999999999998887777766543
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=98.03 E-value=1.2e-05 Score=77.65 Aligned_cols=58 Identities=29% Similarity=0.477 Sum_probs=48.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 262 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 319 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 319 (353)
-..|+.+|-+|+||||.+++...+++..||..|+.||+.|+.+|..|+.++..|+.-.
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678999999999999999999999999999999999999977766555555433
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=98.03 E-value=4e-05 Score=66.98 Aligned_cols=67 Identities=27% Similarity=0.429 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 258 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 258 re~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
-.+|..||-++||=-|.-||-|+-..-++| +.++..|..+|+.|++++..|+.|...|+.++.+|..
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eL-------E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHEL-------EKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888899999999999999998766664 5667777778888888888888888888888888874
No 14
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.62 E-value=0.0003 Score=65.19 Aligned_cols=122 Identities=23% Similarity=0.369 Sum_probs=67.2
Q ss_pred chhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCC-CCCCCCCCCccccCCCCcCCCCCCCC--CC--CC----
Q 018605 30 DWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLM-PPYGTPVPYQAIYPPGGVYAHPSMAT--TP--TA---- 100 (353)
Q Consensus 30 dW~~smQAYy~~~~~pp~y~~s~va~~~phPYmWg~q~~m~-pPyGtp~PY~a~yp~GgvyaHP~mp~--~~--~~---- 100 (353)
|=. ...+|.- =...=.||.+. ++||||- ..++ .| +||||+ ||. +||+||+ +| .+
T Consensus 22 ~~~-~~~~ypD-Ws~mQAYyg~~----~~p~~f~---s~va~sp--~phPYM----WG~--~q~mmPPYGtP~pY~A~Yp 84 (189)
T PF07777_consen 22 DQP-TPHVYPD-WSAMQAYYGPG----APPPYFN---SAVASSP--QPHPYM----WGP--QQPMMPPYGTPVPYPAMYP 84 (189)
T ss_pred CCC-CCccCCc-cHhhhhccCCC----CCCcccC---cccCCCC--CCCCcc----cCC--CccccCCCCCCCCCccccC
Confidence 444 3666643 22344688873 7789987 3343 34 689999 999 9999986 22 11
Q ss_pred -----CCCC---------------CCCCCCCCcccccccccccCCCCCCCCCCCccccCCCCC-CCCccCccccCCCCCC
Q 018605 101 -----APTN---------------TEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGN-DGVSQSSAESGSDGSS 159 (353)
Q Consensus 101 -----~~~~---------------~e~~~k~~~~k~~~~~kk~Kg~~G~k~~~~gk~s~~s~~-~~~s~S~~esgs~gSs 159 (353)
+..+ +++.+..+.+.|-.+ .|.+++ |+....|+++|... -..+.-.+++++....
T Consensus 85 hGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p---~Kss~~-kd~~~~KksKg~~g~~a~s~~n~~~gk~~~~ 160 (189)
T PF07777_consen 85 HGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDP---GKSSGN-KDKGSMKKSKGFDGGLAMSIKNGESGKTSGS 160 (189)
T ss_pred CCccccCCCCCcccccCCCcccccccccCCCCccccccc---ccCcCc-cccccccccccccccceeeccCCccCccccC
Confidence 1111 122222222222111 133333 55555677777652 2122222677777777
Q ss_pred CCCCcCccccccc
Q 018605 160 DASDENGNQQEFA 172 (353)
Q Consensus 160 dgsd~ns~~~~~~ 172 (353)
.++|+.++..++.
T Consensus 161 s~n~~~Sqs~eSg 173 (189)
T PF07777_consen 161 SANDGSSQSSESG 173 (189)
T ss_pred CCCCccCcccccc
Confidence 7788888765665
No 15
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.55 E-value=0.00017 Score=76.37 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=61.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCc
Q 018605 260 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK-EDLSRLCGPE 333 (353)
Q Consensus 260 ~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk-eeL~~L~g~~ 333 (353)
+|-.||+=+||.||++||+||..-|..||..|+.|+.|-++|.+|-..+...+..++.+...|- +.+..|+.++
T Consensus 489 IrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~e 563 (604)
T KOG3863|consen 489 IRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLRDEE 563 (604)
T ss_pred hhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3446788899999999999999999999999999999999999988888888888888888874 4455565544
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.92 E-value=0.0044 Score=52.67 Aligned_cols=50 Identities=30% Similarity=0.436 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
..+.+|+.++..|-.+...|+.++..|-+|+..|+.||..||++|..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999999864
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.88 E-value=0.013 Score=54.87 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 257 ERELKRQKRKQSN-RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 257 Ere~KR~RRk~~N-RESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
|+++...+-++.| +..........++.+++++..+..|+.+|++|+.++..++.+++.|+.+|..++..+.
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 2222233333455566677777778888888888888888888888888877776543
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.73 E-value=0.0074 Score=51.64 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..+..|++++..|..+...|+.++..|-+|+..|+.||..||++|..+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999999999999873
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.57 E-value=0.016 Score=45.43 Aligned_cols=57 Identities=30% Similarity=0.405 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
+.++.|=..++.|+.||..|+.++..+..+...|...|..-+.+|+.|- ..+..|++
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI--~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI--TRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhcc
Confidence 4567777778888888888888888888888888888888888888876 55555554
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.51 E-value=0.018 Score=45.79 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
++.||.+|..+-..+..|+.++..|++++..|..+|..|
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455555555444444444444444444433333333333
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.48 E-value=0.0094 Score=54.11 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCC
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 343 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~ 343 (353)
....|+.||..|+.++..|+++++.|+.||..|..++..+. ++-..|..+|+
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~--eDY~~L~~Im~ 149 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE--EDYQTLIDIMD 149 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 46677788888888888888888888888888888888776 66666666554
No 22
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.024 Score=45.16 Aligned_cols=56 Identities=29% Similarity=0.353 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
-+.-|+.+|+.|+.+|..|..++..++...+.|+.||..|+++-...+ +.|+.|.-
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ--erlrsLLG 74 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ--ERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 345567778888888888888888887777788888877776655544 44555443
No 23
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=96.17 E-value=0.03 Score=45.50 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
-++|..++..|+.....|..++...+++|++|+.||.-|..-|..|...
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888899999999999999999999999999999999999998643
No 24
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.01 E-value=0.049 Score=43.30 Aligned_cols=47 Identities=36% Similarity=0.464 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.+.-|+.+++.|+.+|..|..+...|++++++|+.|-..+..+|..|
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555544
No 25
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.94 E-value=0.073 Score=51.36 Aligned_cols=58 Identities=26% Similarity=0.284 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
.++.+|..+-+.|+.||+.|+.+...|-.++++|..+...|+++|..+......-++-
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v 154 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRV 154 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHH
Confidence 4578999999999999999999999999999999999999999999987665554443
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.91 E-value=0.043 Score=44.49 Aligned_cols=56 Identities=30% Similarity=0.369 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
-+.-|+.+|+.|+.+|..|..++..++.....|+.||..|+++....+ +.|+.|.-
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq--erLr~LLG 74 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 455567777778888888888777766666666666666666655554 44554443
No 27
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.51 E-value=0.038 Score=40.21 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+|+.+...|+...+.|+.+++.|..||..|+.++..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666666654
No 28
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=95.42 E-value=0.32 Score=40.02 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 018605 256 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAV 335 (353)
Q Consensus 256 DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i 335 (353)
-+.-++|..+++.+=|++=..|.-+.....+|+.+++.|......|-.+|.....++..|+.-|.++..+|.... +.|
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~--e~I 83 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI--ETI 83 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 345577888899888888888888888889999999999999999999999999999999999999999998765 444
Q ss_pred hhh
Q 018605 336 ANL 338 (353)
Q Consensus 336 ~~L 338 (353)
+.+
T Consensus 84 r~v 86 (89)
T PF13747_consen 84 RAV 86 (89)
T ss_pred HHH
Confidence 433
No 29
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.40 E-value=0.074 Score=55.59 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..+++||++++.|+.|.+.|.++...++++++.|+.||.+|+++++.+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3778999999999999999999999999999999999999999996543
No 30
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.39 E-value=0.2 Score=46.05 Aligned_cols=70 Identities=21% Similarity=0.189 Sum_probs=56.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 262 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
+.++....+..-+.........+.+++.-++.|..|...|.-++..|.+++..|+.||..|-+++.+..+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555566667778888888999999999999999999999999999999999988877654
No 31
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.37 E-value=0.095 Score=41.84 Aligned_cols=53 Identities=36% Similarity=0.453 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
=|-++++|..+-..|..|-+.++...+.|..++++|+.|...+.++|..|-|.
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999988764
No 32
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=95.34 E-value=0.00066 Score=68.92 Aligned_cols=67 Identities=31% Similarity=0.378 Sum_probs=58.1
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 253 WIQDERELKRQKRKQSNRESARR---SRLRKQAECEELQARVETLS-NENRNLRDELQRLSEECEKLTSEN 319 (353)
Q Consensus 253 ~~~DEre~KR~RRk~~NRESARR---SR~RKq~~leeLE~rv~~Le-~EN~~L~~el~~L~~e~~~L~~EN 319 (353)
.+..+.+.||.+|+++|+.+|.+ ||.|++....+|+.+|+.|+ .++..|..++..|+++.+.|+.+.
T Consensus 146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l 216 (395)
T KOG1414|consen 146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKEL 216 (395)
T ss_pred CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHH
Confidence 35577778899999999999999 99999999999999999999 999988888877777776666554
No 33
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.34 E-value=0.069 Score=45.75 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
..+..|+.++-.|-++...|++.+..|-+|+..|+.||..||++|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45788999999999999999999999999999999999999999988
No 34
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.30 E-value=0.086 Score=41.33 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+..|+.+|+.|-..+..|+.++..|+++...+..|+..|.++...-+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999887654
No 35
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.21 E-value=0.3 Score=45.92 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
.+..-.++..+|+.+++.++.+..+|..+++.|++++..++.|+..|+.++..+...
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 112 IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677778888888888888888888888888888888888888888887743
No 36
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=95.19 E-value=0.1 Score=40.76 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+++++||.++.-++.-..+|-..+.....++..|+.+...|.++|..+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999999999999999999999999999873
No 37
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.94 E-value=0.27 Score=48.04 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=51.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q 018605 265 RKQSNRESARRSRLRKQAECEELQARVE-------TLSNENRNLRDELQRLSEE-----------CEKLTSENNSIKEDL 326 (353)
Q Consensus 265 Rk~~NRESARRSR~RKq~~leeLE~rv~-------~Le~EN~~L~~el~~L~~e-----------~~~L~~EN~~LkeeL 326 (353)
+-+.-|+--+.+..--.++-.+|+.++. .|+.+|+.|+.++..++++ ..+|+.+|..+++.+
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aik 107 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIK 107 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554 4555555555555555543 346788888888888
Q ss_pred HHhcCCchhhhhhhcCCC
Q 018605 327 SRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 327 ~~L~g~~~i~~L~~~~~~ 344 (353)
.+|+ .-|+.|+|.|++
T Consensus 108 eql~--kyiReLEQaNDd 123 (333)
T KOG1853|consen 108 EQLR--KYIRELEQANDD 123 (333)
T ss_pred HHHH--HHHHHHHHhccH
Confidence 8888 889999999987
No 38
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.91 E-value=0.14 Score=41.57 Aligned_cols=51 Identities=33% Similarity=0.462 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
|-++++|..+-..|..++..++..-..|.+++++|+.|...+.++|..|-|
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888888888888888888888877755
No 39
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.84 E-value=0.17 Score=48.72 Aligned_cols=51 Identities=33% Similarity=0.456 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
+..++++..+-+.|..+|.+|..+++.+++++..|+.||.+|.+++..+.|
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 344555556666666666667777777777778888888888888887764
No 40
>PRK04325 hypothetical protein; Provisional
Probab=94.43 E-value=0.3 Score=38.90 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+++++||.++.-++.-...|-..|...+.++..|+.+.+.|.++|..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999999998875
No 41
>PRK02119 hypothetical protein; Provisional
Probab=94.42 E-value=0.28 Score=38.97 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+++.+||.++.-++.-..+|-..|...++++..|+.+...|.++|..+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788899999988888899999999999999999999999998888875
No 42
>PRK00295 hypothetical protein; Provisional
Probab=94.41 E-value=0.3 Score=38.25 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+++.+||.++.-++.-...|-..|...++++..|+.+...|..+|..+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999999999999999999999998875
No 43
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.41 E-value=0.28 Score=38.82 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+++.+||.++.-++.-..+|-+.|...+.++..|..+.+.|..+|..+..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 367889999999999999999999999999999999999999999888753
No 44
>PRK00736 hypothetical protein; Provisional
Probab=94.32 E-value=0.34 Score=37.96 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+++++||.++.-++.-...|-..|.....++..|..+...|.++|..+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999999999999999999999999998875
No 45
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.29 E-value=0.19 Score=36.54 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.||...+.|+.....|+.+...|..+.+.|++|...|+..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478888888888888888888888888999999999888764
No 46
>PRK04406 hypothetical protein; Provisional
Probab=94.26 E-value=0.33 Score=38.83 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+++.+||.++.-++.-+..|-..|...+.++..|+.+.+.|.++|..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5778888888888888888888888888888888888888888887765
No 47
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.26 E-value=0.66 Score=40.68 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=43.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+..|-...||..-....++...++.|+..++.|+.++..+..++..++.+...|..++..+...+....
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666677777777777777777776666666666666666555555555544444443
No 48
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.11 E-value=0.85 Score=40.67 Aligned_cols=68 Identities=31% Similarity=0.317 Sum_probs=54.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 263 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 263 ~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
....+.|++.+-+--.-+++.|+.|+.++..+..+...|..++..|+.+...|..+....+.++..|.
T Consensus 33 Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 33 LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778888888888888888888888888888888888888888888888888888877777775
No 49
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=93.88 E-value=0.12 Score=50.40 Aligned_cols=40 Identities=35% Similarity=0.450 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 018605 290 RVETLSNENRNLRDELQRLSEECE----KLTSENNSIKEDLSRL 329 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~----~L~~EN~~LkeeL~~L 329 (353)
.+..|++||++|++|+..|+.+.+ .|+.||.+||+.|.--
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344577777777777766644433 4899999999977654
No 50
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=93.75 E-value=0.41 Score=45.55 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+.+.++++.+.+++.++.++..|+++.+.+..|+..|..|++.|++++..
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 344555666666677777777888888888888888888888888888764
No 51
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=93.69 E-value=0.1 Score=47.72 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
|+++|.++.+--++|.-|..|| +|.+.|+.++++||.+|.+|.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777776666 333444444444444444443
No 52
>PRK11637 AmiB activator; Provisional
Probab=93.54 E-value=0.93 Score=46.25 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 275 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 275 RSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.....-+.+++.|+.++..++.+...+..++..++.++..|..+...|+.+|..+.
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666666666666666666666666666666666666665555543
No 53
>PRK00846 hypothetical protein; Provisional
Probab=93.49 E-value=0.55 Score=37.98 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+++++||.++.-.+.-..+|-..+...+..+..|+.+...|.++|..+.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888888888888888888888888888888888888888888886
No 54
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.49 E-value=1 Score=42.59 Aligned_cols=52 Identities=27% Similarity=0.347 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.-...+.++++++.++..|+.+...++.++..+++++..++.++...+..|.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666666666666666666666655555555444
No 55
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.42 E-value=0.36 Score=41.11 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
+|=.++..|+.....|..++..|+..+..|..||.+|+-+...|+ +.|..+.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr--~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR--ERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 455677788888888888888888888888888888888888887 55655544
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.12 E-value=0.97 Score=48.28 Aligned_cols=61 Identities=28% Similarity=0.380 Sum_probs=28.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 266 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 266 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
.++...........-+.+++.|+..+...+.++..|..+...|....+.|..|+..|+.++
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555444444444444444444443333
No 57
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=92.86 E-value=0.69 Score=44.29 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 018605 290 RVETLSNENRNLRDELQRLSEECE---KLTSENNSIKEDLSRL 329 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~---~L~~EN~~LkeeL~~L 329 (353)
....|.+||.+|++|+..|+.+.. .|+.||.+|++.|.-.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344455566666666665555544 7789999999877643
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.79 E-value=0.83 Score=50.10 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
.|.|..++.+|+.|...|+.++...++++..|+.|...|+..
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777888888888888888888888888888888777664
No 59
>PRK11637 AmiB activator; Provisional
Probab=92.61 E-value=1.3 Score=45.15 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
...+..++.++..++.+...+..++..|+.++..++.+...+++.|
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555444444443333
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.52 E-value=1.1 Score=49.73 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.6
Q ss_pred hhhhcCCCCCCC
Q 018605 35 MQAFYGAGATPP 46 (353)
Q Consensus 35 mQAYy~~~~~pp 46 (353)
+|.|-=|.+.||
T Consensus 82 LqG~~lP~~LPP 93 (1118)
T KOG1029|consen 82 LQGIQLPPVLPP 93 (1118)
T ss_pred hcCCcCCCCCCh
Confidence 355544444444
No 61
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.44 E-value=0.45 Score=49.88 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.|+.+..+|.++.+.|+++.++|......|..+|..+
T Consensus 106 av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 106 AVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666667777777777777777777777776544
No 62
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=92.22 E-value=0.024 Score=57.65 Aligned_cols=56 Identities=32% Similarity=0.399 Sum_probs=44.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 262 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
+.|=.++||.||-|||.||+.++..|+.+.+.+..+|..|. ..+++.|..++..+.
T Consensus 286 ~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~------~~~~~~l~~~~~~~~ 341 (395)
T KOG1414|consen 286 RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL------LNEVELLRNEVKQLS 341 (395)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc------cchhhHHHhHHhhhc
Confidence 35558899999999999999999999999999999999988 223344555555443
No 63
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=0.49 Score=50.92 Aligned_cols=46 Identities=35% Similarity=0.526 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.++..|+.+|+.|+.||..|+.++.+|+.+++.|+.+..+++.++.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677888888888888888888888888888888877776655
No 64
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.20 E-value=0.64 Score=44.80 Aligned_cols=7 Identities=57% Similarity=1.009 Sum_probs=3.4
Q ss_pred CCCcccc
Q 018605 209 PATNLNI 215 (353)
Q Consensus 209 p~t~Lni 215 (353)
|+|++.|
T Consensus 44 PTT~~eI 50 (290)
T COG4026 44 PTTNVEI 50 (290)
T ss_pred cCchHHH
Confidence 4455444
No 65
>smart00338 BRLZ basic region leucin zipper.
Probab=92.18 E-value=1.3 Score=33.60 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
...+..|+.+...|..++..|+.++..|..|+..|+.++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777777777777777777777777777777653
No 66
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=92.12 E-value=0.63 Score=44.94 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 294 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
||.|+..+..++..|+.|++.|+..|..|=+++.=|+.
T Consensus 98 LE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 98 LEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444455555555555667778888888887776643
No 67
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.04 E-value=2.6 Score=40.08 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
-+..-+++++.|+.+++.|+..|..|...+..+++++..|..+...+......|
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777777777777777777777666666666665443333
No 68
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=92.03 E-value=1.1 Score=35.35 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDEL-------QRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el-------~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.+++.|.+++...+.+|..|+.+- ..+-.++..|+.||..|+.+|..+
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555554 444445555555555555554443
No 69
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.90 E-value=1.3 Score=42.84 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.+|..+++.|+.|+..||-+++.+..++++|....+.|-.+|..+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777766666654
No 70
>PRK04406 hypothetical protein; Provisional
Probab=91.89 E-value=1.5 Score=35.11 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
++.|+.|+..|+.....+..-|+.|.+.+.....++..|+.+|..|. +.+..+..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~ 60 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV--GKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcc
Confidence 45799999999999999999999999999999999999999999996 56666654
No 71
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=91.86 E-value=0.42 Score=36.82 Aligned_cols=25 Identities=44% Similarity=0.741 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
+.+|+.+++.|+.+|..|+.+++.|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444333333
No 72
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.80 E-value=2.9 Score=39.75 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++..+|..+++.|+.|...|...++.|+..+..++.+..+|..++..+.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666666666666554
No 73
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=91.78 E-value=0.88 Score=42.07 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018605 311 ECEKLTSENNSIKEDLS 327 (353)
Q Consensus 311 e~~~L~~EN~~LkeeL~ 327 (353)
+++.|+.++..|+.+|.
T Consensus 111 ~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 111 ELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444444
No 74
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.76 E-value=0.23 Score=45.87 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
+|.+|+.+++ -+.++.++++|+.+++.|+.+.++|+..+..|-
T Consensus 91 ~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 91 WRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666665 455667778888888777775555555554443
No 75
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=91.75 E-value=0.44 Score=35.86 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++.++++|+.++..-+ +.=...-...+.++..|+.||..|+++|..++
T Consensus 2 w~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 2 WLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666665544322 11111223344555666666666666666543
No 76
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.72 E-value=0.52 Score=42.17 Aligned_cols=52 Identities=33% Similarity=0.431 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 280 KQAECEELQARVETLSNENRNLRDEL--QRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el--~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
-++++.+|+.++..|+.+...|...+ ..|..++..|+.|+..|..+|..|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777777777776655 56777888888888888888888875
No 77
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=91.63 E-value=0.71 Score=36.39 Aligned_cols=43 Identities=28% Similarity=0.483 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 018605 296 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 338 (353)
Q Consensus 296 ~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L 338 (353)
.+...+..++..+++++..|+.||..|+.++..|..++.|..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~ 66 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 3444555666666666666666667776666666666655544
No 78
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=91.60 E-value=0.82 Score=44.47 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 268 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 314 (353)
Q Consensus 268 ~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 314 (353)
+-|..+|..-..-+.++.+|+.+.+.|+.++.+|++++..|+..+..
T Consensus 208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555566666666666666666666666666655444
No 79
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.55 E-value=0.81 Score=38.98 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
|-.+|-.|+.-...|.+++..+++|+.+|+.||+-|-+-|+.|...
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 3445666666667788888888889999999999998888887643
No 80
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.52 E-value=0.98 Score=40.05 Aligned_cols=46 Identities=30% Similarity=0.510 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+++.|+.++..|+.++..+-.+|..|+..+..|..+...|..+|..
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444443
No 81
>PRK02119 hypothetical protein; Provisional
Probab=91.34 E-value=1.8 Score=34.44 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhc
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~ 341 (353)
++..|+.|+..|+.....+..-|+.|.+.+.....++..|+.+|..|. +.+..+...
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~--~rl~~~~~~ 59 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA--NKLKDMQPS 59 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccc
Confidence 467899999999999999999999999999999999999999999997 566666543
No 82
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.34 E-value=2.8 Score=40.53 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 268 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 268 ~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
.-.+.+++.=.-++.++++|+.+|..++.+.+.++.++..+
T Consensus 38 ~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 38 AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555566666666666655555555444443
No 83
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.34 E-value=4.3 Score=35.55 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+..++++++++..++.....|..++..+...+..++.|...|+..+.
T Consensus 79 ~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 79 KEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444333
No 84
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.30 E-value=1.7 Score=48.34 Aligned_cols=11 Identities=45% Similarity=0.589 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 018605 278 LRKQAECEELQ 288 (353)
Q Consensus 278 ~RKq~~leeLE 288 (353)
+|+.+..+|||
T Consensus 396 e~rEaar~ElE 406 (1118)
T KOG1029|consen 396 ERREAAREELE 406 (1118)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 85
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.29 E-value=3.7 Score=38.32 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 255 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 255 ~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
..+++....++.+.+-+.-+.+-..-+.++..++.++..|+-++..|..++..|..+...|.
T Consensus 66 ~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 66 KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777666666666666777777777777777777777776666666555
No 86
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.22 E-value=0.86 Score=38.47 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 334 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~ 334 (353)
.+.++++++|+++++.|+.+|..|+.++..|+.....++. ..|++|.-+...+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe---~AR~~Lg~vk~gEi 83 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE---RARNELGMVKPGET 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH---HHHHHcCCCCCCCE
Confidence 3455666777777777777777777777777653322221 24555555544333
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.17 E-value=1.7 Score=45.04 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=59.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
+|++-.+++=+.-.+.....++....|+.++..|+.++..|..++......+..++..+..+...|..|.++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4555555666666667777778888999999999999999999999998888888888888888888887765
No 88
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=91.14 E-value=2.9 Score=31.72 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
..+..|+.+...|..++..|+.++..|..++..|+.++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555555555555555555555555555443
No 89
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.85 E-value=2.1 Score=44.58 Aligned_cols=49 Identities=35% Similarity=0.422 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
-+++-|+.++..|+.||.+||..+..|+..+++|..+..++.++|..+.
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3456677788888888888888888888888888888877777777664
No 90
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=90.81 E-value=1.1 Score=38.51 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 338 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L 338 (353)
+|=.++..|+.....|..++..|+..+..|..||..|+-+-..|+ ..+..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr--~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR--ERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 444566666666666777777777777777777777766666665 444444
No 91
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=90.80 E-value=0.96 Score=48.21 Aligned_cols=69 Identities=28% Similarity=0.280 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018605 254 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 254 ~~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
..-+.+.|-.||.+ |.-|.| +...+....-++--..|..+|+.|..||++|+.||..||.+|..|..+.
T Consensus 271 p~~~~d~kv~krqQ------RmIKNR-----esA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 271 PNVGSDIKVLKRQQ------RMIKNR-----ESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred CCCccCHHHHHHHH------HHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 34557777777553 122222 2222222333445567888888888888999999999999888886543
No 92
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.72 E-value=2.7 Score=39.15 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=30.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
+-.+.++.+..+-+..+.+.+.+...|+.++..-+.++..|..++..|+.++..|+
T Consensus 89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~ 144 (190)
T PF05266_consen 89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQ 144 (190)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34455566666666666666777666666666553334333333333333333333
No 93
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.54 E-value=2.1 Score=34.27 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+++.+||.++..-+.-..+|...+...+..+.+++.+.+.|-+++..++.
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357788888888888888888888888888889999999999988888864
No 94
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.43 E-value=3 Score=38.16 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
.+.++.+|+.+++.|+.+|..|..++..+++++..|..
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555443
No 95
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.38 E-value=1.1 Score=43.32 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
=+++..|||.++..+..++..|+.|++.|+..+.+|-...+-|..
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334467899999999999999999999999999999888776643
No 96
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=90.28 E-value=1.5 Score=36.23 Aligned_cols=38 Identities=37% Similarity=0.581 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc
Q 018605 293 TLSNENRNLRDELQRLSEE------CEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e------~~~L~~EN~~LkeeL~~L~ 330 (353)
-|..+|..|+.+|+.|+.+ ......||.+|++++..|+
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666543 3456667777777766664
No 97
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.27 E-value=3.5 Score=44.15 Aligned_cols=49 Identities=24% Similarity=0.374 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..+...+.+.+.|+.++..|....+.|..+...|..++..++.+|..|.
T Consensus 178 ~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 178 AELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444443
No 98
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.25 E-value=1.4 Score=38.30 Aligned_cols=66 Identities=29% Similarity=0.411 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR---DELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~---~el~~L~~e~~~L~~EN~~L 322 (353)
|+-.-..||+..-..+.+..-.|=.+.-+.|..++-.|..+|..++ .++..|+.++..|......+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666656555555555555666666666666665443 33444444444444444443
No 99
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.18 E-value=2.5 Score=33.43 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcC
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 342 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~ 342 (353)
.+|+.|+..|+.....+..-|+.|.+.+.....+...|+.+|..|. +.+..+....
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~~~~ 59 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT--EKLKASQPSN 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence 4689999999999999999999999999999999999999999997 5667666543
No 100
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.13 E-value=2 Score=45.90 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 272 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 272 SARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+.+.|..-++.+.++...+..|+++...++..+..|..+...|+.||.+|+.+|..++.
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344444455556666777777888888888888888888888888888888888887765
No 101
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=90.10 E-value=1.5 Score=47.32 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..++.+||.+.+.|..|.+++..+++.|++.+.+.+.|..+|+.++++-+
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 35777888888888888888888888888888888888888877776654
No 102
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.07 E-value=5.6 Score=35.81 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 275 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 275 RSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..+.+.+++++.++..++.+..+...|++++..++++++.++.+...+++.+..+
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQL 177 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444444455555555555554444444
No 103
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.06 E-value=0.98 Score=40.40 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 018605 290 RVETLSNENRNLRDEL 305 (353)
Q Consensus 290 rv~~Le~EN~~L~~el 305 (353)
++..|+.++..|..++
T Consensus 117 ~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 117 EIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 104
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.80 E-value=2 Score=33.49 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
.|+.++..|+....-+..-|+.|.+.+.....+...|+.+|..|. +.|+++.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR--ERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 378888889999988888999998888888888899998888887 6666665
No 105
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=89.79 E-value=1.4 Score=43.79 Aligned_cols=73 Identities=29% Similarity=0.317 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 257 ERELKRQKRKQSNR-----ESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 257 Ere~KR~RRk~~NR-----ESARRSR~RK-q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
|-|.|-.+-++.|- .++-.+..-- +..|++|+..+.+|+.++.+...+++++++.+..|+.|...|+++|...
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566552 2333443333 5667888888888888888888888999999999999999999988765
No 106
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.72 E-value=1.7 Score=37.32 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=27.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 266 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 266 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
.+.-.|..+-|+..=..+-++|+..+..|+.++..+..++..|+.++..++..
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554455555555555555555555555555555555444433
No 107
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=89.62 E-value=3.4 Score=31.63 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.+++|...|..|..+...|..++..|+.+......|-.+--++|.-+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356777777777777777777777777777777777766666665443
No 108
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.60 E-value=5.6 Score=37.03 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+....+.+|+.++..|+.+.+.|..+.+....++..|..+...|.++|...
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555444444444555555555555544443
No 109
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.55 E-value=7.8 Score=33.55 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+-..|..++..++..|..|..+|.-|-.+|..+
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344566667777777777777777777776654
No 110
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.47 E-value=5 Score=37.87 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 312 (353)
.+++.++..|+.+++.++.++..++.++..+++.+
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333
No 111
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=89.38 E-value=1.6 Score=33.31 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 321 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~ 321 (353)
+++||.++..|+.....|+.+++.|++.++.|..-.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665555555555444433
No 112
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.37 E-value=6.4 Score=39.12 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 018605 309 SEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 309 ~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.++.+.|..+...+..+|..|+
T Consensus 112 ~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 112 QEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443
No 113
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=89.34 E-value=1.6 Score=36.87 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
..|+.++..+++++++|+.+|..|+.++..|..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444455555555555555555555555555554
No 114
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=89.34 E-value=0.4 Score=36.94 Aligned_cols=41 Identities=32% Similarity=0.515 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 296 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 296 ~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
.|...|+.+|..|.+++.+|+.||..||. +..++.+..|..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~----~~~pe~l~q~~~ 54 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ----NASPEQLAQLQS 54 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCSSSSSTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHh
Confidence 45566777777777777888888887765 445565555544
No 115
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=89.33 E-value=2.1 Score=35.48 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
|+.|-...+.+|..|+.+|..|..++..|+.++...+.|-..|-
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll 83 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELL 83 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666666666666666666666655553
No 116
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=89.31 E-value=1.1 Score=42.20 Aligned_cols=43 Identities=30% Similarity=0.462 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
+.|..+|+.|+.|+..|+.++..|++ |..+...|.+-|..|.+
T Consensus 128 e~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 128 EKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444422 33444445555555554
No 117
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.17 E-value=1.7 Score=42.67 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Q 018605 274 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRLC 330 (353)
Q Consensus 274 RRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~----~EN~~LkeeL~~L~ 330 (353)
..-=.+....++++..++..++.++.++..++..|+.++..|+ .++..|..+++.++
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555566666666666666666666666666655443 34444555555554
No 118
>PRK00846 hypothetical protein; Provisional
Probab=89.15 E-value=2.8 Score=33.90 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
-+.|+.|+..|+........-|+.|.+.+.....+...|+.+|..|. +.+..+...+.+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~--~rL~~~~~s~~~ 66 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRSTLFA 66 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccCC
Confidence 36789999999999999999999999999999999999999999998 677877765544
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.12 E-value=3.6 Score=39.74 Aligned_cols=52 Identities=35% Similarity=0.461 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
....++..|..++..++.+...|..++..|..+.+.|..+...|+.++..+.
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777777777777777777777766665
No 120
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=89.08 E-value=2.9 Score=38.70 Aligned_cols=55 Identities=24% Similarity=0.496 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
..+|+.++..|+.++..|..++..|+.+++.++..+..+++...+.+ .+.|..|.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~-~~ei~~lk 176 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH-QEEIDFLK 176 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 56788888888888888888888888888888777777665555544 23344443
No 121
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.03 E-value=2 Score=36.26 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 286 ELQARVETLSNENRNL--RDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L--~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.++.|+..|+.+...| +..+..|+-++..++-+.+.|.++|..+
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3355555555555555 5555555555555555555555555554
No 122
>PRK09039 hypothetical protein; Validated
Probab=89.01 E-value=4.3 Score=40.80 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 018605 308 LSEECEKLT 316 (353)
Q Consensus 308 L~~e~~~L~ 316 (353)
|+++++.|+
T Consensus 142 L~~qI~aLr 150 (343)
T PRK09039 142 LNQQIAALR 150 (343)
T ss_pred HHHHHHHHH
Confidence 333333333
No 123
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=88.88 E-value=3.8 Score=38.49 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 018605 257 ERELKRQKRKQSNRESARR 275 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARR 275 (353)
|+-++|.||-...+.++=.
T Consensus 19 eel~~rLR~~E~ek~~~m~ 37 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMV 37 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456777777666666543
No 124
>PF15294 Leu_zip: Leucine zipper
Probab=88.87 E-value=1.3 Score=43.74 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
|..++..|+.||..|+.++..++.+|.....|...|..+|..++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999998875
No 125
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.77 E-value=4.2 Score=40.35 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.+++.|..++..+..++..++.++..|+.++..|..+...+.+++..+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555444444444444444444444444333333
No 126
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=88.57 E-value=5.4 Score=41.43 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018605 259 ELKRQKRKQSNRESARRSRLRKQAECEELQA 289 (353)
Q Consensus 259 e~KR~RRk~~NRESARRSR~RKq~~leeLE~ 289 (353)
..|.+|||....+-=||.|..=..+|.+|-.
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~ 257 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQ 257 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344556666678888888888888887765
No 127
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.46 E-value=3.1 Score=32.78 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
.|+.++..|..++......+..|.
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~ 32 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLR 32 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 128
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.44 E-value=4.4 Score=41.18 Aligned_cols=51 Identities=22% Similarity=0.498 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.|-+.+...||.-+..|+.||+.|.-+++.+.++|.+.+.|+..|..+|.+
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 455667777888888999999999999999999998888888888665544
No 129
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.42 E-value=2.9 Score=39.25 Aligned_cols=42 Identities=31% Similarity=0.485 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
..|..++..|+.+|..|..+.+.|+..+..|..++..|+.+|
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555555555555555555555444
No 130
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.36 E-value=3.6 Score=32.71 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
|.+.|..|..+-+.|......+...|..|+.++..+..+...|+.++..+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666665555543
No 131
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=88.32 E-value=0.26 Score=41.67 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.+|+.|...+..|..+|..|+.++..|+.++..+..+...|+..|...
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 578889999999999999999999999998888888888888776543
No 132
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=88.16 E-value=1.8 Score=35.19 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
.+..+...+..++..++.+..+|..||..|+-++..+..+..|..+-
T Consensus 32 ~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA 78 (97)
T PF04999_consen 32 YSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIA 78 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 34556777788888888888888999999998888888877765543
No 133
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=88.07 E-value=11 Score=31.18 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=57.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 263 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 263 ~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..+....++..+..=..|...+..||+++..|..|...-..++-.+......|..|+..|+..+.+-.
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 34566677777778888999999999999999999999888888888888999999998888776654
No 134
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.07 E-value=3.8 Score=43.99 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.|+..++.+-+.++.....|..++....+||+.|+.+|..|+.+|...
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777777777777777777777777777766543
No 135
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=87.79 E-value=7.1 Score=36.75 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 275 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 275 RSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
--+.||...++ ...++..|+.+-..|..++-.+...|..|+.|..+|+.+...+..
T Consensus 162 vN~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 162 VNRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455554444 577788888888888888888888889999999888888877653
No 136
>PRK04325 hypothetical protein; Provisional
Probab=87.78 E-value=3.1 Score=33.12 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
+..|+.++..|+.....+..-|+.|.+.+.....++..|+.+|..|. +.+..+.
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~--~rl~~~~ 57 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY--QQMRDAN 57 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 46788999999999999999999999999999999999999999886 4566554
No 137
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=87.73 E-value=1.7 Score=37.00 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
...+..|+.++..+..+++.|+.++..+..+...|+.+
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 79 SSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444
No 138
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=87.53 E-value=2.4 Score=33.90 Aligned_cols=46 Identities=28% Similarity=0.381 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhc
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECE--------KLTSENNSIKEDLSRLC 330 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~--------~L~~EN~~LkeeL~~L~ 330 (353)
.+++..+..|+.||-.|+-+|-.|.+... .+..||-.|+.++..|.
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~ 56 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLK 56 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666655444 23444444444444443
No 139
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.50 E-value=4 Score=35.49 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 018605 317 SENNSIKEDLSR 328 (353)
Q Consensus 317 ~EN~~LkeeL~~ 328 (353)
.++.+|+..|.+
T Consensus 96 E~veEL~~Dv~D 107 (120)
T PF12325_consen 96 EEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 140
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=87.43 E-value=7.8 Score=38.56 Aligned_cols=56 Identities=27% Similarity=0.329 Sum_probs=27.9
Q ss_pred HHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 260 LKRQKRKQ---SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 260 ~KR~RRk~---~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
.||+.||. |=|+-.|+-++-=.-+|+.|+.+-+.|+.+-.+|.+||..|++-+...
T Consensus 230 rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 230 RKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 223333333333444555555555556555555555555555544433
No 141
>PRK00295 hypothetical protein; Provisional
Probab=87.41 E-value=3.8 Score=32.07 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
|+.++..|+.....+..-|+.|.+.+.....++..|+.+|..|. +.+.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 67888999999999999999998888888888899999988886 5666665
No 142
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.35 E-value=10 Score=33.84 Aligned_cols=46 Identities=33% Similarity=0.461 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhc
Q 018605 294 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~ 341 (353)
|+.+...|..++..|..++..|+.|+..|...|.... ..|..|+..
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q--~kv~eLE~~ 102 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ--EKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3333333334444444444444455555555555554 445555543
No 143
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=87.31 E-value=5.3 Score=36.26 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
.++.++..|..++..|+.++..|......+
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444444444444444444333333
No 144
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.21 E-value=2.5 Score=41.43 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
-=+.+|+.|..+|+.+..+...++.++..++.++..|..+...|++.|....
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666776676677777777666666666543
No 145
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.06 E-value=1.8 Score=41.90 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 275 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 275 RSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
++-.-=+.+|+.|+.+|..|+.+++++.-+|+.|+++...|-.+...+..+++
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~ 106 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGA 106 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456688999999999999999999999999999999999999888766553
No 146
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.02 E-value=6.8 Score=44.44 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhc
Q 018605 314 KLTSENNSIKEDLSRLC 330 (353)
Q Consensus 314 ~L~~EN~~LkeeL~~L~ 330 (353)
+|+.+|.+||+-|.+|+
T Consensus 372 qlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554444
No 147
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.92 E-value=6 Score=45.35 Aligned_cols=51 Identities=27% Similarity=0.487 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 279 RKQAECEELQARV-ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 279 RKq~~leeLE~rv-~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+....+..++.+. ..|..+..++..+++.|+.+++.|+.++.+|++++..+
T Consensus 376 ~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 376 RLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444 34444445555555566666666666666666555554
No 148
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.89 E-value=12 Score=33.66 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
...++.++..++.....+.+++..|.+++.+++.+-..++.++..+.
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 171 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQ 171 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666677777777776663
No 149
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=86.88 E-value=2.4 Score=32.36 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+..|+.+...|...+..++.+++.|+.+...|.+-+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 150
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.86 E-value=4.7 Score=31.23 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..++...+..|..+.+++......+..|..+...|+.++..++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445666666666666666666666666666666666554
No 151
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.84 E-value=6.8 Score=30.35 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
.-...++.++..-+..|..|..+|..|+.+++.|+.
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556778888888888888888888888777764
No 152
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=86.82 E-value=7.3 Score=35.36 Aligned_cols=46 Identities=35% Similarity=0.599 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+|..+|+.|+.+|..|...+..+..+...|......|+.++..++
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 3456677777777777776666666666666666666666666665
No 153
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=86.82 E-value=1.8 Score=43.30 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+...|..+|..-.+++.....|...|..+|..++
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555556666666666666666654
No 154
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.81 E-value=8.7 Score=35.24 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.|+.++..|+.+...+..-++.|+.|+..|..++..|.+++..|
T Consensus 127 ~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 127 QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444
No 155
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.81 E-value=4.9 Score=38.35 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
|+++...+.++...|+.+++....+.+.+..+...|+.+.+.+..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 444455555555555555555555555555555555555555543
No 156
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.69 E-value=57 Score=36.20 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=6.3
Q ss_pred hhHHHHHHHHH
Q 018605 255 QDERELKRQKR 265 (353)
Q Consensus 255 ~DEre~KR~RR 265 (353)
--|.|+||+|.
T Consensus 422 rLE~dvkkLra 432 (697)
T PF09726_consen 422 RLEADVKKLRA 432 (697)
T ss_pred HHHHHHHHHHH
Confidence 44566666663
No 157
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=86.60 E-value=4.9 Score=36.62 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 294 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
++.++..+..+++.|++++++.+.|...|+.+++.+..
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677788888888888888888888888877754
No 158
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.60 E-value=2.2 Score=42.68 Aligned_cols=34 Identities=38% Similarity=0.713 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
++..|+.+|..|+.++..++.+|..|..+|..|+
T Consensus 28 ~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr 61 (310)
T PF09755_consen 28 RIESLQQENRVLKRELETEKARCKHLQEENRALR 61 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 159
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=86.59 E-value=3.3 Score=40.74 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
-||.+++....|+..|+.++..|+..+..++++.+..++.|+.|+
T Consensus 68 ~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 68 NKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444444444444444444444444444443
No 160
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.58 E-value=2 Score=43.41 Aligned_cols=61 Identities=31% Similarity=0.373 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhcCCC
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 344 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g-~~~i~~L~~~~~~ 344 (353)
+..|+.++..|+.+++.|+.++..|..++..++.+...|++++..+.. +..+..+...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 64 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDD 64 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCC
Confidence 345566666666677777777777777777777777777777777765 3445666555544
No 161
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=86.55 E-value=3.1 Score=35.86 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 337 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~ 337 (353)
+|=.+|..|+.....|..++..|++.+..|..||..|+-+...|+ +.+..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR--~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR--ERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHhCC
Confidence 455678889999999999999999999999999999999988887 44444
No 162
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=86.52 E-value=12 Score=36.93 Aligned_cols=49 Identities=14% Similarity=0.368 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.+++.++.++...+.+..+++.++...+.++..|+.+-.+|...+..+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777777777777777777777766666666665554444
No 163
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=86.38 E-value=9.4 Score=28.11 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 299 RNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
..|..++..|..++..|..++..|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 164
>PF15556 Zwint: ZW10 interactor
Probab=86.23 E-value=12 Score=35.83 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 266 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 266 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
..++|.+.+.-.+....++..|......++.....-+.+++.|..++..|+.+--.-+++
T Consensus 118 ~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdK 177 (252)
T PF15556_consen 118 MEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDK 177 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666566666666555555555555555555555555555444333333
No 165
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.19 E-value=11 Score=34.02 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
.++..|..++...+.+...++.++..++.+...++.+|..|+.+...+.-|..+.+...
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~ 149 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDK 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 44556667777777777888888888888888888888888888888877777765543
No 166
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=86.19 E-value=3.2 Score=31.86 Aligned_cols=38 Identities=34% Similarity=0.611 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhh
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRL-CGPEAVA 336 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L-~g~~~i~ 336 (353)
..++.++..|+.+++.|+.+|..|+.++..| ..++.|.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3444555555555555566666666666666 4444433
No 167
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.05 E-value=7.4 Score=40.40 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
+.+++.|+.++..+..++..|.+++..|..+
T Consensus 364 ~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 364 KAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 168
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=85.97 E-value=5.3 Score=35.07 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 336 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~ 336 (353)
-+..||+.+|..|+.|+..+..-...|...+..|+-.+...+.++..+.....+.
T Consensus 25 iERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~ 79 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLN 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 3445777888888888888888888888888888988888888888876554443
No 169
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=85.93 E-value=4.2 Score=36.11 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 270 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 270 RESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
|.-+||.-++-.-|...- ++..++ +-.+|..+...|.+++++|..||.+++.++..+..
T Consensus 51 rlKQrRRTLKNRGYA~sC--R~KRv~-Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSC--RVKRVQ-QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHhhhhHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554332 222222 23457788888888888888888888888887763
No 170
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.92 E-value=3.1 Score=42.63 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhcCCC
Q 018605 296 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 344 (353)
Q Consensus 296 ~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g-~~~i~~L~~~~~~ 344 (353)
.++..|..++..|+.++..++.|...|+++|.+|+. +..+.++...+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDS 78 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcC
Confidence 334444444444444445555555666666666655 3445665555444
No 171
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.91 E-value=3.4 Score=38.17 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+.+.|..-|.-|+.+++.....++.|..++..|...+..
T Consensus 74 qR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444
No 172
>PRK14162 heat shock protein GrpE; Provisional
Probab=85.83 E-value=2.2 Score=39.99 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018605 292 ETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~ 313 (353)
+.|+.++..|+.++.+++.+++
T Consensus 49 ~~l~~e~~elkd~~lR~~AEfe 70 (194)
T PRK14162 49 ADLKAKNKDLEDKYLRSQAEIQ 70 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 173
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.76 E-value=7.1 Score=36.12 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
+..+.+|+.+++.|+.+...|+.+++.+.+.
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444444433
No 174
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.73 E-value=3.7 Score=38.56 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+++++|..-+..|+.+|..|..+...+..+...|..+...|.++-.+|.
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~ 115 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLL 115 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45677777777777777777666666666665555555555555544443
No 175
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=85.66 E-value=13 Score=35.08 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 336 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~ 336 (353)
+-|+||.+ .+.-.+-..|.-..-+++...|+..+..-+.+-...-.+-..++.+...|..|...++.+|.+|+ ..|.
T Consensus 102 ~~eirR~~-LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ--~qv~ 178 (192)
T PF11180_consen 102 DVEIRRAQ-LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ--RQVR 178 (192)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 34444443 44555556666666777888888888877777777666777777777788888888888888777 5666
Q ss_pred hhhhcCCC
Q 018605 337 NLEQSNPT 344 (353)
Q Consensus 337 ~L~~~~~~ 344 (353)
.|+...+.
T Consensus 179 ~Lq~q~~~ 186 (192)
T PF11180_consen 179 QLQRQANE 186 (192)
T ss_pred HHHHHhcC
Confidence 66665443
No 176
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=85.39 E-value=3.6 Score=42.23 Aligned_cols=61 Identities=28% Similarity=0.288 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 271 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 271 ESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
+.|..-|+|-.+--...|..++.+.-|...||.+++++......|+.|+..|++-+..|..
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455566666666666777788888888999999999999999999999999988888763
No 177
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.39 E-value=16 Score=34.16 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 302 RDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 302 ~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.++..+.+++..|+-|+..|..++..+
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 178
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.35 E-value=7.2 Score=41.89 Aligned_cols=61 Identities=30% Similarity=0.396 Sum_probs=35.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 266 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 266 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
+++-|..+|..-.=-...+.+|+.++..++..+..|..++..|+.++..|..+...++.+|
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3344444444333234556666666666666666666666666666666666666666543
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.15 E-value=16 Score=36.39 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 018605 312 CEKLTSENNSIKEDLS 327 (353)
Q Consensus 312 ~~~L~~EN~~LkeeL~ 327 (353)
...+..|...|..++.
T Consensus 108 l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 108 LIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334433333
No 180
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=84.87 E-value=8.2 Score=38.84 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
..|...+...+.+|..|..++..|++++..|..++.-||+++..++.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 45666777778888888888888888888888888888888877654
No 181
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=84.63 E-value=17 Score=32.07 Aligned_cols=49 Identities=31% Similarity=0.376 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNEN-RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN-~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..+..|+.....|..+. ..++.++..|---+..|...+..+|.+|..|-
T Consensus 62 ~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 62 SEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 33344444444444333 34455555555556666677888888888774
No 182
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=84.52 E-value=5.6 Score=30.46 Aligned_cols=40 Identities=25% Similarity=0.508 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+++.|..+.+.|..++..|..++..|+.+....+++..+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777777666666544
No 183
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.40 E-value=4.7 Score=40.93 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+++.++|.++-+.|..-.++|+.+++.|+++...|......|+.+.+.
T Consensus 231 ~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 231 QAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444444555555555555555555555555555555555444
No 184
>PRK14158 heat shock protein GrpE; Provisional
Probab=84.36 E-value=3.1 Score=39.00 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el 305 (353)
++|+.++..+.++...++++.
T Consensus 57 ~el~d~~lR~~AefeN~RkR~ 77 (194)
T PRK14158 57 AANWDKYLRERADLENYRKRV 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333
No 185
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=84.32 E-value=4.1 Score=35.87 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.....-+..|+.||.-|+..+-.+++.++.=+.....|+++|...
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4555667888999999999999999999999999999999999865
No 186
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=84.18 E-value=1.8 Score=43.75 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018605 294 LSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L 315 (353)
|+.||..|++|++.|+.+.++|
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 187
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=84.18 E-value=3.5 Score=43.47 Aligned_cols=51 Identities=14% Similarity=0.335 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
+++++.|+.+++.|..++..|..+|+.|+.++..|+.+...++.++....+
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~~~ 132 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATG 132 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Confidence 455677777777777888888888888888888888888777776655443
No 188
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=83.90 E-value=1.2 Score=34.38 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
+++.|..++..|+.+|..|..|...|+.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555544443
No 189
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=83.71 E-value=7.1 Score=41.91 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 258 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE-------NRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 258 re~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~E-------N~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
+++++.-...+++-.+|...+-+++.+++++++|+.|+.. ..+..++++.|+.+.+..+...+.|+.+|
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566777788888888888999999999988874 23445556655555555444444433333
No 190
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.70 E-value=13 Score=31.22 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 280 KQAECEELQARVETL--SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 280 Kq~~leeLE~rv~~L--e~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
...++..||.+++.| ..+...|+-++..++-++..|..+.+.+...+.-|
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666 66666666666666666666666666665554443
No 191
>smart00340 HALZ homeobox associated leucin zipper.
Probab=83.67 E-value=2.1 Score=31.06 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 306 QRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 306 ~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
+.|++-|+.|..||++|+.+|.+|+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666677777777777666654
No 192
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=83.62 E-value=3.3 Score=40.66 Aligned_cols=49 Identities=31% Similarity=0.288 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
+-.+..+|+.+.+.|+.++.+| ..+..+.+.|+.||.+|++.|.--...
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~----~~~~~~~~~l~~EN~~Lr~lL~~~~~~ 112 (284)
T COG1792 64 FLKSLKDLALENEELKKELAEL----EQLLEEVESLEEENKRLKELLDFKESS 112 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 3344455555555555555433 334456689999999999988765444
No 193
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=83.31 E-value=4.9 Score=40.76 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
|..|++++.++..-..||..+.+++++++.-|..|...-.+|++.|.+
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999899999999999999999999999999999888765
No 194
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.24 E-value=14 Score=38.66 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
.+|.+-+..+..+..+|+.++..|..++..|+.+...|+.+|..+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344555556666777788888888888888888888888888887653
No 195
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=83.15 E-value=1.3 Score=32.24 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
.|-..|..|..++..|..++..|..||..||+++
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------------HHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3445566667777777777777777777777665
No 196
>PF15058 Speriolin_N: Speriolin N terminus
Probab=83.13 E-value=2.8 Score=39.45 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.|.|..+++.|-.||++|+++++.+ .||.+||.-|.+-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence 4678889999999999999988655 4555555544443
No 197
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.09 E-value=5.6 Score=34.72 Aligned_cols=41 Identities=34% Similarity=0.444 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 319 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 319 (353)
.|..-+++|+.+++.|+.+...|.++.+.|+++++.|+.+.
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666665555555555555555554444443
No 198
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.05 E-value=11 Score=42.23 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=51.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 268 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 268 ~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+-..=+--+.+-...++.|++.+..|+.||.+|..++..+..+..+|+.++.-|+.+|..+.
T Consensus 657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333444556677777888889999999999999999999999999999999999999988554
No 199
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=82.74 E-value=17 Score=32.34 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=31.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 265 RKQSNRESARRSRLRKQAECEELQ-------ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 265 Rk~~NRESARRSR~RKq~~leeLE-------~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+++..-+.+.+.-.+|++.++.|+ .+|..|+.+...+..++..++.++..+ +..++.+|..+
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f 182 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRF 182 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 444455555555566665555554 255555555555555555555444333 22334444444
No 200
>PRK14148 heat shock protein GrpE; Provisional
Probab=82.71 E-value=4.1 Score=38.18 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhc
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~ 341 (353)
+.|+.+++.|+.+...|+.++.++..+++-++....+=++++........+.+|...
T Consensus 43 ~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV 99 (195)
T PRK14148 43 ERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPV 99 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333334444444444444444444444443333333333333333333333444333
No 201
>PRK00736 hypothetical protein; Provisional
Probab=82.50 E-value=6.5 Score=30.77 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
.++.++..|+.....+..-|+.|.+.+.....++..|+.+|..|. +.+..+..
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~--~rl~~~~~ 54 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT--ERFLSLEE 54 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 367788888888888888888888888888888888888888886 45555543
No 202
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=82.44 E-value=14 Score=31.60 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
-.++++++.|...|..|.+++..|+.+
T Consensus 43 Rk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 43 RKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 203
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=82.43 E-value=6.7 Score=31.96 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
-|+.|-.+|+..+.||..|..+.+.|+.-+..|..
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555543
No 204
>PRK14160 heat shock protein GrpE; Provisional
Probab=82.40 E-value=4.7 Score=38.29 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
+.|+.++..|+.+...|+.++.+++.+++-++....+=++++........+.+|...+++
T Consensus 64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 64 NKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 344444444444444444444444444444444444444444445555556666665554
No 205
>PRK14127 cell division protein GpsB; Provisional
Probab=82.39 E-value=3.3 Score=35.54 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
+.|+++...++.|..||..|+.++..|++++..+..+....
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44555566666666666666666666666655555554443
No 206
>PRK14140 heat shock protein GrpE; Provisional
Probab=82.38 E-value=3.2 Score=38.79 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 338 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L 338 (353)
+++|+.+++.|+.++..|+.++.++..+++-++....+=++.+........+.+|
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~L 93 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDL 93 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443333333333333333333333333
No 207
>PRK09039 hypothetical protein; Validated
Probab=82.36 E-value=16 Score=36.69 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 291 VETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~ 313 (353)
|..|+.+.+.|+.++..|+.++.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 208
>PF14282 FlxA: FlxA-like protein
Probab=82.35 E-value=5.8 Score=33.42 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 285 EELQARVETLSN----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 285 eeLE~rv~~Le~----EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..|..++..|.. -...-..++..|+.++..|..++..|..+.....
T Consensus 29 ~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 29 KQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554 1234455666666666666666666666655554
No 209
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.29 E-value=20 Score=34.39 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+.+..|+....+++.+....++.+..|..|...|+.++..++.
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555443
No 210
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.22 E-value=30 Score=29.83 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 277 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 277 R~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
|.-.+..+..|+..++.++..+.+|..+-+.|+.....|..+|..+-.+|..|
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444
No 211
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=82.09 E-value=4.7 Score=33.41 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=19.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 288 QARVETLSNEN-RNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 288 E~rv~~Le~EN-~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
|.+|..|..-- .....++..|+.++..|..||..|+.+|...
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554211 1234455555555555555555555555443
No 212
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.08 E-value=16 Score=30.05 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.|..++..|++++..|..+...+.++|..+
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 213
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=81.94 E-value=3.2 Score=35.85 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
+.|+.+|..|.+++..|+.||.-||
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555566665554
No 214
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=81.71 E-value=5.5 Score=33.96 Aligned_cols=39 Identities=36% Similarity=0.481 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 292 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+.|...+..|..++..+.+++++|+.++..+.+++..|.
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666666654
No 215
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=81.59 E-value=21 Score=34.99 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 258 RELKRQKRKQSNRESARRSRLRKQAECEE---------LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 258 re~KR~RRk~~NRESARRSR~RKq~~lee---------LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.++.+.++.+...-+.+. ..|++.+.. +...+..+..+|..+.+++...++++.+|+.++..|++++..
T Consensus 141 del~e~~~~el~~l~~~~--q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 141 DELNEMRQMELASLSRKI--QEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555444333 222222222 344556667899999999999999999999999999999999
Q ss_pred hcC
Q 018605 329 LCG 331 (353)
Q Consensus 329 L~g 331 (353)
|+.
T Consensus 219 L~~ 221 (258)
T PF15397_consen 219 LQA 221 (258)
T ss_pred HHH
Confidence 974
No 216
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.54 E-value=12 Score=38.23 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 255 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 321 (353)
Q Consensus 255 ~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~ 321 (353)
.++..+|+.++.+-+|..|-.+-+|+.. |+|..-...|+.+.+.|..++..|+..++-|....++
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455556666666666666655555544 4444445555555555555555555555555544443
No 217
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=81.40 E-value=15 Score=33.44 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=41.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 260 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 314 (353)
Q Consensus 260 ~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 314 (353)
.+..+++++.|..|+-+-+.|-.++.+|..++...+....+|...|..|...+..
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788999999999999999999988887777777776666666544443
No 218
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=81.33 E-value=2.4 Score=35.30 Aligned_cols=31 Identities=39% Similarity=0.579 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
|+.+++.|..+++.|+.+|..|..+|..+++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666667777777777666666655543
No 219
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=81.24 E-value=0.48 Score=45.35 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
.-+..|||+..++..|+.-...|..++++|++++++|.+||.+|
T Consensus 119 DdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 119 DDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp --------------------------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777778888777
No 220
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=81.04 E-value=25 Score=34.70 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++..+.+++.++.+..+..+++..+++.+...+....+|..+-.+|.
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~ 248 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLS 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555555555544444
No 221
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.01 E-value=5.6 Score=43.05 Aligned_cols=43 Identities=35% Similarity=0.587 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
|++|+.+++.++.+...|..++..+.++++.++.++.+|.+++
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444433
No 222
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=80.91 E-value=13 Score=34.76 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
++.+..|+.++..++.....|+.++..|+.++..++..-..|..+......
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777777777777777777766666655443
No 223
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.56 E-value=15 Score=38.63 Aligned_cols=55 Identities=25% Similarity=0.222 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018605 277 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 277 R~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
+.|+..++..+-.+++.|+.||. ..+++.|..++..|+.....|+..+.+|.+.+
T Consensus 280 e~rrhrEil~k~eReasle~Enl--qmr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 280 EERRHREILIKKEREASLEKENL--QMRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45556666666666666666664 44566788888888888888888888887654
No 224
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=80.52 E-value=15 Score=41.55 Aligned_cols=75 Identities=23% Similarity=0.213 Sum_probs=55.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 264 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 264 RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
.-.++.-++++.+-........+|..+|+.|..+-..+..+.+.+...++.|+.|...|..+++.|+.. +.++.+
T Consensus 448 ~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~--~~~~~q 522 (980)
T KOG0980|consen 448 DDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT--LSNLAQ 522 (980)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 345566778888888777788888888888888777777777777777788888888888888877743 444443
No 225
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=80.36 E-value=2.9 Score=36.45 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
|..-+|+|+.++..|+-||..|+++|..--
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345689999999999999999998886543
No 226
>PRK14161 heat shock protein GrpE; Provisional
Probab=80.33 E-value=4.9 Score=37.10 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhc
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~ 341 (353)
++.|+.+..+|+.++.++..+++-++....+=++++........+.+|...
T Consensus 28 i~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv 78 (178)
T PRK14161 28 ITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNV 78 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333333333333333333333333333333333333333333333333333
No 227
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=80.24 E-value=7.8 Score=38.49 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 270 RESARRSRLRKQAECEELQARVETL 294 (353)
Q Consensus 270 RESARRSR~RKq~~leeLE~rv~~L 294 (353)
+|+.+|-.. +..+|++|..++..+
T Consensus 78 kes~~~l~d-RetEI~eLksQL~RM 101 (305)
T PF15290_consen 78 KESENRLHD-RETEIDELKSQLARM 101 (305)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 344444444 234455555544433
No 228
>PRK14153 heat shock protein GrpE; Provisional
Probab=80.14 E-value=3.9 Score=38.35 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRD 303 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~ 303 (353)
+|+.++..+.++...+++
T Consensus 51 elkd~~lR~~AEfeN~rK 68 (194)
T PRK14153 51 SLKEQLFRLAAEFDNFRK 68 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 229
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.06 E-value=29 Score=28.44 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLS-----NENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 282 ~~leeLE~rv~~Le-----~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.++..||.+++.-- .....|..++..|+.+...|..+|..|+.+|.
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666554322 25566888899999999999999999998874
No 230
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.06 E-value=19 Score=31.72 Aligned_cols=50 Identities=10% Similarity=0.341 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.++++.|..++++..+-....++++..++.....+..+...+...+..|.
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777766666666666666665
No 231
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=79.95 E-value=22 Score=34.16 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 307 RLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 307 ~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
..+++++-|+.-|+.|+.+|+.+-.+
T Consensus 232 k~~eei~fLk~tN~qLKaQLegI~ap 257 (259)
T KOG4001|consen 232 KMKEEIEFLKETNRQLKAQLEGILAP 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 34556666777777777777766543
No 232
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=79.71 E-value=7.5 Score=39.83 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
|+.+++.|+.++..|..++..+++++..|+.|+..|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555666666666666666666666667777777654
No 233
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=79.64 E-value=9.3 Score=35.93 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 302 RDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 302 ~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.++|..|....+.|..||..||+-|--|-
T Consensus 114 ~~KL~eLE~kq~~L~rEN~eLKElcl~LD 142 (195)
T PF10226_consen 114 QQKLKELEDKQEELIRENLELKELCLYLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34556666666777778888887776664
No 234
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=79.44 E-value=6.3 Score=33.21 Aligned_cols=44 Identities=30% Similarity=0.421 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
..+|..++.-.+.|-.-|++.+..|..+++.|+.|...++.+..
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35666667766666666777776666666666666666555443
No 235
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.28 E-value=13 Score=39.28 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=41.6
Q ss_pred HHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCchhh
Q 018605 265 RKQSNRESARRSRLRKQA----ECEELQARVETLSNENRNLRDELQRLSE----ECEKLTSENNSIKEDLSRLCGPEAVA 336 (353)
Q Consensus 265 Rk~~NRESARRSR~RKq~----~leeLE~rv~~Le~EN~~L~~el~~L~~----e~~~L~~EN~~LkeeL~~L~g~~~i~ 336 (353)
-.+.|-++++..=+||.+ .++.++.++..++.+|..|++....++. ..+.+..++..+.+++..|+ +.|+
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq--EQlr 445 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ--EQLR 445 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 344566666666666544 3445556666666666666554443333 23333344444445555555 5566
Q ss_pred hhhhcCCC
Q 018605 337 NLEQSNPT 344 (353)
Q Consensus 337 ~L~~~~~~ 344 (353)
+|.--+++
T Consensus 446 Dlmf~le~ 453 (493)
T KOG0804|consen 446 DLMFFLEA 453 (493)
T ss_pred hHheehhh
Confidence 66555555
No 236
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=79.22 E-value=5.3 Score=30.11 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
++...-.....++..|+.||..|+.+|..++.
T Consensus 19 ~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 19 ARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334456678888999999999999987754
No 237
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.14 E-value=17 Score=38.47 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 307 RLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 307 ~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+|.++.++|..|..+|+..|.+|.
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555553
No 238
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=79.11 E-value=6.9 Score=30.74 Aligned_cols=31 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
....++..++.+++.|+.+|..|+.|+..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445566666677777777777766666554
No 239
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=79.08 E-value=1.6 Score=39.99 Aligned_cols=29 Identities=41% Similarity=0.628 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 298 NRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 298 N~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
-+.|+.++++|+.|+..|+.|+ .+++++.
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 3345555555555555555555 4444443
No 240
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=79.05 E-value=1.9 Score=31.36 Aligned_cols=43 Identities=37% Similarity=0.499 Sum_probs=11.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 262 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el 305 (353)
++++..+||+=|+.--... ..|.+|+.++..|..||..||.++
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3456777777777655543 357777777777777777777765
No 241
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.03 E-value=40 Score=32.53 Aligned_cols=39 Identities=33% Similarity=0.527 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+..++.|+..++.++..|+.++..|+..|..|..+|..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 334444444444455555555555555555554444444
No 242
>PRK14145 heat shock protein GrpE; Provisional
Probab=79.03 E-value=6.7 Score=36.88 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018605 293 TLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~ 313 (353)
.|+.+...|+.++.++..+++
T Consensus 56 ~le~e~~el~d~~lR~~AEfe 76 (196)
T PRK14145 56 QKEVEAQEYLDIAQRLKAEFE 76 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 243
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=78.99 E-value=6.3 Score=34.88 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
+...|..++.|+.|...=..+|..|++++..+...|..|..+
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444455555555555555555555555555555555443
No 244
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=78.97 E-value=13 Score=42.05 Aligned_cols=72 Identities=32% Similarity=0.452 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHH----------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 270 RESARRSRLRKQA--ECEELQARVE----------------TL-SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 270 RESARRSR~RKq~--~leeLE~rv~----------------~L-e~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
|++||+.+.+++- ++..|+.+++ .| +.|+..|...++.+.+++..|.++...|..+|..|.
T Consensus 729 ~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE 808 (984)
T COG4717 729 REAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777776653 3444444443 11 367777888899999999999999999999999999
Q ss_pred CCchhhhhhhc
Q 018605 331 GPEAVANLEQS 341 (353)
Q Consensus 331 g~~~i~~L~~~ 341 (353)
+...+++|.+.
T Consensus 809 ~g~~~a~lr~~ 819 (984)
T COG4717 809 GGGTVAELRQR 819 (984)
T ss_pred cCChHHHHHHH
Confidence 99999998764
No 245
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.75 E-value=19 Score=41.38 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++..+.+.|+-+++.|+.+...+..++..+..++..|..|+..|+..+....
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444555666666666666666666666666666666666666666665554
No 246
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=78.66 E-value=29 Score=29.71 Aligned_cols=22 Identities=45% Similarity=0.729 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHhHHHHHH
Q 018605 254 IQDERELKRQKRKQSNRESARR 275 (353)
Q Consensus 254 ~~DEre~KR~RRk~~NRESARR 275 (353)
+.+||+.+..+|..+||||-+.
T Consensus 48 MKEER~K~E~~~q~r~rES~~E 69 (121)
T PF10669_consen 48 MKEERSKKEEKRQKRNRESKRE 69 (121)
T ss_pred HHHHHHHHHHHHHHHhhhhHHH
Confidence 5678988899999999998653
No 247
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=78.62 E-value=22 Score=29.81 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
...+|..|..++..|..++..|...|..+
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 248
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=78.57 E-value=4.8 Score=43.58 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+|-.+|.+|..|+..|+.++...++-..+|+..+.+|.++|+.+..
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888877777777777777777777653
No 249
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=78.50 E-value=11 Score=32.13 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 265 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 265 Rk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
=+-+||.++|..++-...+-..|. -+.|+..|..++..+.++...+..+..++
T Consensus 54 lmsQNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~~~~~ 106 (108)
T PF06210_consen 54 LMSQNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLERDQER 106 (108)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 345677777643333333222222 34455666666666666655555555443
No 250
>smart00340 HALZ homeobox associated leucin zipper.
Probab=78.41 E-value=5 Score=29.20 Aligned_cols=26 Identities=46% Similarity=0.733 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
++-|.+-.+.|..||..|+.++..|+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666665553
No 251
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.37 E-value=18 Score=42.43 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018605 272 SARRSRLRKQAECEELQA 289 (353)
Q Consensus 272 SARRSR~RKq~~leeLE~ 289 (353)
..+..+.+++..+.+|+.
T Consensus 847 ~l~~e~e~~~~eI~~Lq~ 864 (1311)
T TIGR00606 847 LNRKLIQDQQEQIQHLKS 864 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 252
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.21 E-value=12 Score=33.30 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
.++-.+|..|..++..|+.+...|..++..++..
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554443
No 253
>PHA03162 hypothetical protein; Provisional
Probab=78.09 E-value=1.6 Score=38.77 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQ 306 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~ 306 (353)
+++.-+|+|+.++..|+-||..|+++|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999999999999983
No 254
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.06 E-value=36 Score=34.02 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
++..|..++..+..++...+.++..++++...|......+.+++..+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444333333333
No 255
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.97 E-value=15 Score=31.28 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
...|+.+...-...|..+.+|++.|.-.|.+|..++..|+
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444
No 256
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=77.59 E-value=13 Score=34.20 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCchhhhhhh
Q 018605 321 SIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 321 ~LkeeL~~L~g~~~i~~L~~ 340 (353)
.+..+|.+++.....+.++.
T Consensus 106 ~i~~Kl~dmrnS~tFKSfEe 125 (162)
T PF04201_consen 106 AISRKLGDMRNSPTFKSFEE 125 (162)
T ss_pred HHHHHHHHHhcchHHHhHHH
Confidence 34455555555444444443
No 257
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=77.55 E-value=17 Score=29.94 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+..|...+..|..-...|.++...|..++..|...|++.|.++.+..
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444445556666666666665544
No 258
>PRK11546 zraP zinc resistance protein; Provisional
Probab=77.32 E-value=8.9 Score=34.45 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNL 301 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L 301 (353)
.+=+....+|++++-..+.|...|
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555444444444
No 259
>PF14645 Chibby: Chibby family
Probab=77.26 E-value=8.7 Score=33.15 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
..|..+...|+.||.-|+-+++.|-.-+....+|..-+..+|
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455556677777777777666555555555555554443
No 260
>PRK14157 heat shock protein GrpE; Provisional
Probab=77.26 E-value=6.7 Score=37.69 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQAR 290 (353)
Q Consensus 278 ~RKq~~leeLE~r 290 (353)
+|-+++++.+.+|
T Consensus 101 lR~~AEfeNyRKR 113 (227)
T PRK14157 101 QRERAEFINYRNR 113 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 261
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=77.22 E-value=26 Score=34.37 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAEC 284 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~l 284 (353)
|++.|-.-|++..+.=-=+|.+|-|...
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~a 38 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSA 38 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445444433
No 262
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=77.18 E-value=23 Score=37.51 Aligned_cols=78 Identities=28% Similarity=0.320 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHH--------HHHHHHHH---HHHHHHHHHHHHHHHHH---------------------
Q 018605 255 QDERELKRQKRKQSNRESARRSR--------LRKQAECE---ELQARVETLSNENRNLR--------------------- 302 (353)
Q Consensus 255 ~DEre~KR~RRk~~NRESARRSR--------~RKq~~le---eLE~rv~~Le~EN~~L~--------------------- 302 (353)
+-|+-.+|+||.+-.|.++=+-+ .|-|.++. .|..-...|+.+|++|+
T Consensus 48 qkEel~rr~rr~e~er~slm~~~g~l~ndvnrrlQ~hl~eir~lK~~nqKlq~~nqElrdL~cfldddrqkgrk~arewq 127 (513)
T KOG3819|consen 48 QKEELQRRLRRAEAERVSLMLAHGGLMNDVNRRLQQHLGEIRGLKDANQKLQQDNQELRDLCCFLDDDRQKGRKLAREWQ 127 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhccccchHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHH
Confidence 55666777888777777764332 23333333 34444555666666653
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 303 ------------------DELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 303 ------------------~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
+++..|+.+.+.|+.||.+|++-|....++
T Consensus 128 rfgr~tS~~~~~eva~~~qKl~~LE~kqe~l~renlelkelc~~~~~e 175 (513)
T KOG3819|consen 128 RFGRQTSGAMLPEVAGYQQKLYELENKQEELLRENLELKELCHSRLGE 175 (513)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccCC
Confidence 356677778888888999999888864443
No 263
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.14 E-value=16 Score=29.35 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcC
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 342 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~ 342 (353)
..+||+|+..|+...+.-.+-|+.|...+...+....+++.+|..|. +.+.++...+
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~--~kl~~~~~~~ 59 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT--EKLKDLQPSA 59 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence 35688888888888888888888888888888888888888888876 5555555544
No 264
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.08 E-value=16 Score=39.76 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 279 RKQAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~---el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+..++.+|+.+++.++.+.....+ .+..-+.-+....++|..|+++|..|+
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq 173 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQ 173 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHH
Confidence 6677788888777777665432222 222222233444555666666655554
No 265
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=76.99 E-value=14 Score=32.24 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNE 297 (353)
Q Consensus 281 q~~leeLE~rv~~Le~E 297 (353)
..++.+|+.+|..|..|
T Consensus 13 e~ev~glq~K~~~L~~e 29 (120)
T PF10482_consen 13 EKEVQGLQNKLLELKKE 29 (120)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 33444444444444433
No 266
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=76.98 E-value=20 Score=29.14 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
+++.|..-...|+.++....+....|..++..++.
T Consensus 20 EI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 20 EIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444444444443
No 267
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=76.81 E-value=9.2 Score=32.23 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 292 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..|+.+.+-...+...|++.+..|..+|..|+.+|.++.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666677777776666665
No 268
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=76.79 E-value=13 Score=34.41 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
|..+++.....|..|..+|..|..++..|+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~ 115 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLR 115 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555556665555555555543
No 269
>PRK14160 heat shock protein GrpE; Provisional
Probab=76.74 E-value=11 Score=35.82 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+..|+.++..|+.++..|..++..|+.++..+.++...+|.+..
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555554444444444444444433
No 270
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=76.61 E-value=42 Score=31.56 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
...|-.-...+..||..|+.++..|.+++..|+..+..|..+-..|..
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777899999999999999988888888888877766653
No 271
>PHA03155 hypothetical protein; Provisional
Probab=76.61 E-value=3.3 Score=35.95 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQR 307 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~ 307 (353)
-+|+|+.++..|+-||..|++++.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999998855
No 272
>PRK12705 hypothetical protein; Provisional
Probab=76.46 E-value=38 Score=36.20 Aligned_cols=45 Identities=27% Similarity=0.384 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.|+.+.+.|+.....|..+...|..+...|......+..+|+.+.
T Consensus 92 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia 136 (508)
T PRK12705 92 QLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVA 136 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445554444444444444444444444444444455443
No 273
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=76.39 E-value=13 Score=31.39 Aligned_cols=40 Identities=20% Similarity=0.442 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.++...-.-|+.|+.....|+++|+.|+.-...|...+..
T Consensus 57 ~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 57 QQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566678888888888999999999998888887754
No 274
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=76.26 E-value=20 Score=40.13 Aligned_cols=64 Identities=28% Similarity=0.339 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 281 QAECEELQARVETLSNENRNLRD---------------------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~---------------------el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
..++.+|..++..+..||..|.. ++..|...++.++.||..|+-+|..+...-.|++.+
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E 170 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEE 170 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777778888877655 456677788888888888888888887777777777
Q ss_pred hcCCC
Q 018605 340 QSNPT 344 (353)
Q Consensus 340 ~~~~~ 344 (353)
.....
T Consensus 171 ~~~~~ 175 (769)
T PF05911_consen 171 REYSR 175 (769)
T ss_pred HHHhH
Confidence 65543
No 275
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=76.18 E-value=27 Score=32.95 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
..++..|+.|...++.+|..|+.++..|..
T Consensus 153 r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 153 RQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 276
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=76.10 E-value=14 Score=28.83 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
++++.++..|+..+..+..++..+.+++..+..-+..|.
T Consensus 16 ~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 16 DNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555554443
No 277
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=76.00 E-value=29 Score=30.44 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDEL-QRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el-~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.+++.+...+..|+.++......+ ..+.++..........+..+|..|
T Consensus 90 ~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 90 CENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555444444 233333344444444444444433
No 278
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=75.95 E-value=19 Score=31.66 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=15.2
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQAR--VETLSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 280 Kq~~leeLE~r--v~~Le~EN~~L~~el~~L~~e~ 312 (353)
++++++.|+.. +..+.....+|+.+|+.....+
T Consensus 79 ~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 79 AQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544 4444444444444444444333
No 279
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.92 E-value=27 Score=41.90 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=8.9
Q ss_pred HHHHHHhHHHHHHHHHH
Q 018605 263 QKRKQSNRESARRSRLR 279 (353)
Q Consensus 263 ~RRk~~NRESARRSR~R 279 (353)
++...+.++.|++.+.-
T Consensus 323 L~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 323 ESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444556666665543
No 280
>PRK02224 chromosome segregation protein; Provisional
Probab=75.78 E-value=31 Score=38.18 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 018605 285 EELQARV 291 (353)
Q Consensus 285 eeLE~rv 291 (353)
.+|+.++
T Consensus 512 ~~l~~~~ 518 (880)
T PRK02224 512 ERLEERR 518 (880)
T ss_pred HHHHHHH
Confidence 3333333
No 281
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=75.77 E-value=16 Score=30.91 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 270 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 270 RESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
||.|+.-+==++.+.+.|+.--+.|+.|...-+++|+.|+++
T Consensus 57 rE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 57 REAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444544443344444444443344444444455555555443
No 282
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=75.73 E-value=26 Score=35.41 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=14.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAE 283 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~ 283 (353)
+++|+++++|...-..=.||..+
T Consensus 122 ~e~r~~lk~RI~rSEAFKRKllE 144 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRKLLE 144 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777766655555443
No 283
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=75.70 E-value=30 Score=36.36 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
+..|.+-...+..++..|..++..|..+...|+++|..|+ ..+..|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ--NELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 3556666667777888888888888888888888888886 4444443
No 284
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=75.60 E-value=23 Score=39.42 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+.+.|..+...+++++..++..-++|...+..|+.++.+|+
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45667778888888888888888889999999999999888
No 285
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=75.33 E-value=18 Score=37.81 Aligned_cols=44 Identities=32% Similarity=0.357 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 266 KQSNRESARRSRLRK-----QAECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 266 k~~NRESARRSR~RK-----q~~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
+..-|.+|++--+|- ++.+.++|..+..|+.||..|..+.-.+.
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~ 75 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREE 75 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555444432 34455566666666666666665554433
No 286
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=75.18 E-value=13 Score=40.77 Aligned_cols=51 Identities=31% Similarity=0.373 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018605 283 ECEELQARVETLSNENRNLRDELQR----------------------------LSEECEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~----------------------------L~~e~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
++.+|+..+..|+.++..|..+|.. -+..++.|+.||..|+++|..|.+..
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~ 589 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGN 589 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4555555566666666665555554 12567888999999999998886543
No 287
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=75.08 E-value=28 Score=38.07 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+|..+++++....++|++.|.+-+.++.+|+.+..+-...++++
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 44444445555555555555544445555544444444333333
No 288
>PRK10698 phage shock protein PspA; Provisional
Probab=74.82 E-value=42 Score=31.79 Aligned_cols=54 Identities=9% Similarity=0.141 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAV 335 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i 335 (353)
+.+..|+.+++.++.....|+..+..|+.++..++..-..|..+...-.....|
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~ 152 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDV 152 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667777777777777777777777777777776666555443333
No 289
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=74.82 E-value=13 Score=30.79 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCchhhhhhhcC
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS----RLCGPEAVANLEQSN 342 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~----~L~g~~~i~~L~~~~ 342 (353)
.+.|..||+.|..|....+. +.+|..++.+-+ .+...+.+..|.+..
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~-----qvkn~~vrqknee~~~~~sr~~V~d~L~q~g 82 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAET-----QVKNAKVRQKNEENTRRLSRDSVIDQLQQHG 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHhhccCCHHHHHHHHHHcC
Confidence 44455555555544443332 233444444433 333344455555544
No 290
>PRK15396 murein lipoprotein; Provisional
Probab=74.82 E-value=21 Score=28.97 Aligned_cols=46 Identities=13% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+++|..+|+.|..+..+|...+..++...+....|-.+--++|.-
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777666666665555555543
No 291
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=74.71 E-value=33 Score=40.57 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 337 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~ 337 (353)
..++++..++..++.+...++.++..+++++..|+.+...|+.++..|.+.+....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~ 331 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQD 331 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 44667778888888888888888888888888888888889999988887666543
No 292
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=74.57 E-value=25 Score=34.96 Aligned_cols=75 Identities=31% Similarity=0.524 Sum_probs=0.0
Q ss_pred hhhhH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 253 WIQDE-------RELKRQKRKQSNRESARRSRLRKQAECEELQA-------RVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 253 ~~~DE-------re~KR~RRk~~NRESARRSR~RKq~~leeLE~-------rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
|..|| +-+.+..-++.+-+--++-|.-||=.|+.||. +++.-+.+...|+.++..|.+.|+.|...
T Consensus 3 Wa~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 3 WAVEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred chHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 018605 319 NNSIKEDLS 327 (353)
Q Consensus 319 N~~LkeeL~ 327 (353)
+..|.-+|.
T Consensus 83 rqKlshdlq 91 (307)
T PF10481_consen 83 RQKLSHDLQ 91 (307)
T ss_pred HHHhhHHHh
No 293
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=74.53 E-value=10 Score=31.88 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
.+++.+.-.|...|.+|..++..|.
T Consensus 20 ~~v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 20 SDVEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443
No 294
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.53 E-value=53 Score=29.17 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 274 RRSRLRKQAECEELQARVETLSNENRNLR-------DELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 274 RRSR~RKq~~leeLE~rv~~Le~EN~~L~-------~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
=..|.++..+++.++..+...+.+...|+ .++..|+.++..++.+...++.++..+
T Consensus 109 l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 109 LDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555553 355555555555555555555555544
No 295
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=74.44 E-value=13 Score=31.87 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
..|..++..++.+++.|..+|..|++++..|...
T Consensus 53 ~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 53 LQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344444445555555555555555555555544
No 296
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=74.39 E-value=48 Score=29.55 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
....+..-++.++.|..||..||..-..- =|++|..|++
T Consensus 73 ~~~~l~~re~~i~rL~~ENe~lR~Wa~t~-LPd~V~RL~~ 111 (135)
T TIGR03495 73 ARALLAQREQRIERLKRENEDLRRWADTP-LPDDVIRLRQ 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHhcCC-CcHHHHHHhc
Confidence 33344444556667777777777655443 2677777765
No 297
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=74.33 E-value=9.8 Score=38.54 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
+.+|+.+++.|+.++..|..++..++.++..|+.++..|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567788888888888888888888888888888887764
No 298
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=74.28 E-value=18 Score=34.24 Aligned_cols=45 Identities=31% Similarity=0.413 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cchhhhhhh
Q 018605 296 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQ 340 (353)
Q Consensus 296 ~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g-~~~i~~L~~ 340 (353)
.||..|..+|..+.+++..|+.||..|++-...++- .+.|..|..
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467778888888888888888888877765544321 144444444
No 299
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.28 E-value=25 Score=40.19 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|+.++..|++.++.|..+...||++++.-
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577788888888888888888888887765
No 300
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.22 E-value=28 Score=37.88 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 018605 290 RVETLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~---e~~~L~~EN~~LkeeL~~L 329 (353)
....|+.||-.|++++..|+. +++.|+-|+.+|.++++-|
T Consensus 171 eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~ell 213 (772)
T KOG0999|consen 171 EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELL 213 (772)
T ss_pred HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344566677777777776654 5666777777776665554
No 301
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=74.20 E-value=46 Score=32.08 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 270 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 270 RESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
..+++.--.+-+..+..|+.++..|+..|..|..+|..|+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 3344444445555667777777777777777666665554
No 302
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.17 E-value=31 Score=34.16 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQ---RLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~---~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
--++++++++..--..|+-|..+|. .|-+..+.|+.|-+.|+++|.--
T Consensus 133 ~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelavr 183 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVR 183 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665553 34455556666666666665443
No 303
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=74.09 E-value=28 Score=35.96 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.|+.++..|++++..|+.+...|.+++..
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 304
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.04 E-value=32 Score=37.23 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+..|+.+++.++.+...+..++..+++++..|..+...|+.++.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444433
No 305
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.95 E-value=13 Score=37.03 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
-+++-|..+++.|+....+|+.++.....+++.++.....|+.++..|+.
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777777777777777777777773
No 306
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.83 E-value=14 Score=32.03 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Q 018605 256 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS----EECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 256 DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~----~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+...+-++-++.+-+.+.....=|. .+.+++.++..|+.+....+..+...+ .+-..|..|+..++.+|..|.
T Consensus 41 ~~Aq~~YE~El~~Ha~~~~~L~~lr~-e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 41 QEAQQKYERELVKHAEDIKELQQLRE-ELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777777666554443 367778888888887777666666544 455678888888888888886
No 307
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=73.72 E-value=27 Score=38.97 Aligned_cols=44 Identities=16% Similarity=0.378 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
.+..+.|+++++.++....+++..-++|...++.|+.|..+|++
T Consensus 215 le~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666663
No 308
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=73.71 E-value=13 Score=40.78 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
+|+.+|+.|+.++..|..+|+.+..++.
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~ 110 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVS 110 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 309
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=73.64 E-value=7 Score=33.85 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
+++|-|..++..|+..|..|++|...|+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554443
No 310
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.34 E-value=18 Score=34.76 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECE-------KLTSENNSIKEDLSRLC 330 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~-------~L~~EN~~LkeeL~~L~ 330 (353)
.....|++++.+.+.|..|-..+.++|....+.+. +++.|...+++.+..++
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777776666666655554444 44455555555555555
No 311
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=73.12 E-value=22 Score=32.98 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
.+|++++++.+.+.+.++.+..+|+.+|..+++
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666555555443
No 312
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.98 E-value=32 Score=35.54 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
|..++..|++++..|+.+...|.+++
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 313
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.98 E-value=27 Score=36.48 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
.+=+.++.+|+.++..++.+..+....+..++..+..+......|
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 333445555555555555555444444444444444444333333
No 314
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.97 E-value=16 Score=29.08 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
...+..|+..+..+..++..|+..+..+..+...|+.++.
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555556666666666665554
No 315
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=72.83 E-value=32 Score=39.90 Aligned_cols=41 Identities=32% Similarity=0.517 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
+++..++..|+.....|+.++..+..++..++.+...++.+
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444443333333333333333333
No 316
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.66 E-value=12 Score=42.99 Aligned_cols=66 Identities=27% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhcCCC
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 344 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g-~~~i~~L~~~~~~ 344 (353)
|..+...+|..++..+...-..|..++..|++...-|+.||..|..+|..|.- .+-...|+++|.+
T Consensus 506 rl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~ 572 (1195)
T KOG4643|consen 506 RLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNND 572 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH
No 317
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=72.64 E-value=30 Score=31.08 Aligned_cols=34 Identities=15% Similarity=0.407 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSN---ENRNLRDELQRLSEECE 313 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~---EN~~L~~el~~L~~e~~ 313 (353)
-+..|.+...+++.|+. .|..|+.+|..|+.++.
T Consensus 32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33444444444555554 44555555555554444
No 318
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=72.61 E-value=36 Score=39.38 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNEN-RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN-~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..++.|+.+|..++.+- ..|..++..++.+++.|..|+..|.+++..|.
T Consensus 372 ~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~ 421 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR 421 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555543 55555666666666666666666666666655
No 319
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=72.48 E-value=18 Score=32.49 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 300 NLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
.|...+..|.+.+..|..++..+.
T Consensus 112 ~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 112 KLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444443
No 320
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=72.33 E-value=13 Score=37.90 Aligned_cols=53 Identities=30% Similarity=0.555 Sum_probs=36.4
Q ss_pred CCCCchhhhhhhhcCCCCCC--CCCCCCCCC--CCCCCCccccCCCCCCCCCCCCCCCcc
Q 018605 26 PSYADWSSSMQAFYGAGATP--PPFFASTVA--SPTPHPYLWGSQHPLMPPYGTPVPYQA 81 (353)
Q Consensus 26 ~~~pdW~~smQAYy~~~~~p--p~y~~s~va--~~~phPYmWg~q~~m~pPyGtp~PY~a 81 (353)
|.-.|-+ .+|.-|-+..+| .+||.-.-+ +.-|||-.|-. -|+|+||-.+||++
T Consensus 72 ~~p~dis-~k~g~~r~~~~pd~~p~y~ls~gavgqip~~l~wp~--y~~pt~~~~~p~p~ 128 (421)
T KOG3248|consen 72 PLPADIS-PKQGIPRPPHPPDLSPFYPLSPGAVGQIPHPLGWPV--YPIPTFGFRHPYPG 128 (421)
T ss_pred CCccccc-ccCCCCCCCCCccccccccCCccccccCCCccCCcc--ccCCCCCCCCCCch
Confidence 5567888 589766654443 367654333 46799999922 36678999999996
No 321
>PHA03162 hypothetical protein; Provisional
Probab=72.01 E-value=5.6 Score=35.35 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018605 305 LQRLSEECEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 305 l~~L~~e~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
++.|..++.+|+.||..|+.+|..--+++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~ 43 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDD 43 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 56778888999999999999998776665
No 322
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=71.88 E-value=41 Score=33.83 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018605 274 RRSRLRKQAECEELQARVE 292 (353)
Q Consensus 274 RRSR~RKq~~leeLE~rv~ 292 (353)
+|.-+|++.++++|++...
T Consensus 354 qraeekeq~eaee~~ra~k 372 (445)
T KOG2891|consen 354 QRAEEKEQKEAEELERARK 372 (445)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3344466666676665443
No 323
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=71.82 E-value=16 Score=35.07 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQ---RLSEECEKLTS 317 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~---~L~~e~~~L~~ 317 (353)
....+|.++.+.|++||.+|+.++. .|++|+++|+.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555444 33444444444
No 324
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=71.80 E-value=71 Score=28.16 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcC
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDEL-QRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 342 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el-~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~ 342 (353)
....+.+..+..++..|+..+..|+.+. ..++.+...|..=...|-+++..+. ..++.|.+..
T Consensus 51 ~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk--~rLk~LG~eV 114 (136)
T PF04871_consen 51 QAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYK--ERLKELGEEV 114 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHH--HHHHHcCCCc
Confidence 3344446667777777777777777655 5666666666666666667777666 6677777765
No 325
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=71.73 E-value=19 Score=28.61 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 018605 297 ENRNLRDEL 305 (353)
Q Consensus 297 EN~~L~~el 305 (353)
+|..|..++
T Consensus 43 ~~a~L~~qv 51 (70)
T PF04899_consen 43 ENAALSEQV 51 (70)
T ss_pred HHHHHHHHH
Confidence 333333333
No 326
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=71.70 E-value=6.6 Score=36.97 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
..|+.++..|+.++..|..|+..|+.++.
T Consensus 115 ~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 115 ESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 33333333333333344444444444433
No 327
>PF14282 FlxA: FlxA-like protein
Probab=71.69 E-value=18 Score=30.37 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 279 RKQAECEELQARVETLSNENRNL 301 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L 301 (353)
.|+..+..|+.++..|+.+...|
T Consensus 48 ~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 48 QKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333
No 328
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=71.66 E-value=33 Score=39.80 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=7.0
Q ss_pred CCchhhhhhhhcC
Q 018605 28 YADWSSSMQAFYG 40 (353)
Q Consensus 28 ~pdW~~smQAYy~ 40 (353)
-..|..++.+-=|
T Consensus 528 ~~~y~~Aie~alG 540 (1163)
T COG1196 528 KEKYETALEAALG 540 (1163)
T ss_pred ChHHHHHHHHHcc
Confidence 3466665655544
No 329
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=71.66 E-value=34 Score=31.81 Aligned_cols=10 Identities=30% Similarity=0.797 Sum_probs=5.9
Q ss_pred CCCCcccccc
Q 018605 208 MPATNLNIGM 217 (353)
Q Consensus 208 ~p~t~Lnigm 217 (353)
+|..-+|.|+
T Consensus 89 i~~s~VnDGI 98 (176)
T PF12999_consen 89 IPSSRVNDGI 98 (176)
T ss_pred eehhhhcCCc
Confidence 3455567765
No 330
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=71.64 E-value=21 Score=31.04 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 266 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 266 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
+..|+.-|++. +-++.++++|..++..+-.+...|..++..+..++..+
T Consensus 40 ~~~n~~lAe~n-L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 40 LAENEELAEQN-LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555543 22344555555555555555555555555444444433
No 331
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.62 E-value=29 Score=32.00 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++.|+..+..+......|+..+..|+.++..|+.+-..|+.+.....
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555444433
No 332
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=71.62 E-value=13 Score=37.92 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 018605 284 CEELQARVETL 294 (353)
Q Consensus 284 leeLE~rv~~L 294 (353)
.++|..+|+.|
T Consensus 48 N~~Lk~eVerL 58 (420)
T PF07407_consen 48 NNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHH
Confidence 35555555555
No 333
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=71.62 E-value=18 Score=36.79 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 018605 290 RVETLSNENRNLRDELQRLSEE---CEKLTSENNSIKEDLS 327 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e---~~~L~~EN~~LkeeL~ 327 (353)
....|..||++|++|+..|+.+ ++.++.||..|+..+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555555555555555433 3455677776665543
No 334
>PF13514 AAA_27: AAA domain
Probab=71.60 E-value=45 Score=38.42 Aligned_cols=50 Identities=36% Similarity=0.555 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhc
Q 018605 292 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~ 341 (353)
..|+.+...|..++..|..++..|..+...++.+|..|.+...+..+.+.
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e 941 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQE 941 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 55677778888888888888888888888899999999888777766543
No 335
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=71.51 E-value=28 Score=30.57 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=51.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 264 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 264 RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
.|-++.|...---|.-=|++|..||.++..++.-+..|..+|.-|+..+.+.+..+..|+.
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3566677777777777889999999999999999999999999999988888888877653
No 336
>COG4420 Predicted membrane protein [Function unknown]
Probab=71.27 E-value=23 Score=33.38 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 334 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~ 334 (353)
..|..++..|+...-.++.|+..|++.+.++..+.+
T Consensus 137 ~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~ 172 (191)
T COG4420 137 AALHEKLDELRLDLGYVRDELDDLRELLAEIEPELA 172 (191)
T ss_pred HHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccc
Confidence 444444444444444555555555555555554433
No 337
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.12 E-value=20 Score=40.10 Aligned_cols=66 Identities=35% Similarity=0.525 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHH
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEE----------------------------CEKLTSENNSIKEDLS 327 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e----------------------------~~~L~~EN~~LkeeL~ 327 (353)
++-+-.+++..|..+++.++.||..|+-++..|.++ +..|++|-++||.-+.
T Consensus 128 ~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 128 EKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555677889999999999999999888877653 4466777777776665
Q ss_pred H-hcCCchhhhhhhc
Q 018605 328 R-LCGPEAVANLEQS 341 (353)
Q Consensus 328 ~-L~g~~~i~~L~~~ 341 (353)
+ |.||-.|+.+...
T Consensus 208 k~lpgpaa~a~mk~e 222 (769)
T PF05911_consen 208 KKLPGPAALAQMKNE 222 (769)
T ss_pred ccCCChHHHHHhHHH
Confidence 4 6777777665543
No 338
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.06 E-value=38 Score=37.08 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
+..+|+.+++.|+.++..|+.++..++
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444443
No 339
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=70.95 E-value=14 Score=28.47 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
+++|+.++..|+.|+..|+.++..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777766666665443
No 340
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=70.83 E-value=34 Score=34.39 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.++-+|+.++..+-.||.+|...+...++--..|..|+..|+++-..
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566666666666666666666666666555433
No 341
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=70.80 E-value=32 Score=34.74 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
++..|..-+...++++..|..|...|+++|..++|
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566777788888888888888888888885
No 342
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=70.78 E-value=16 Score=28.80 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
.|..+++.|+..|..|..-++..+.+++.|.....+-.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~e 39 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYE 39 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666555444433
No 343
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=70.76 E-value=7.9 Score=38.96 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhc
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~ 341 (353)
|+.|+.+|.+|..+|+.-++|+.-|..-|++--.++++|. +.|..|+-.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLs--qTi~ELEEa 50 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLS--QTIRELEEA 50 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4567777777777777777777766666655555555554 555555443
No 344
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=70.72 E-value=48 Score=34.79 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
..+...|+.+-..++..+..++-++..|+.||..|.+++.
T Consensus 33 ~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 33 SAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444443
No 345
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=70.72 E-value=24 Score=35.37 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
++.+|+.+++.++.+...+..++..+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444443
No 346
>PF15556 Zwint: ZW10 interactor
Probab=70.70 E-value=60 Score=31.21 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=54.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 267 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 267 ~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+.+++..+.|.-.+++.-.-|..+..|..-..+++.+....+++++.|..|...|+.+...-+
T Consensus 112 aKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeq 175 (252)
T PF15556_consen 112 AKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQ 175 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888889888899999999999999999999999988876643
No 347
>PHA03011 hypothetical protein; Provisional
Probab=70.69 E-value=25 Score=30.26 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSE-------ECEKLTSENNSIKEDLS 327 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~-------e~~~L~~EN~~LkeeL~ 327 (353)
.+++|..+...|-.|-.-+..++..|.. +++-|++|..+||+.+.
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555554443 44455555555555543
No 348
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.63 E-value=58 Score=30.05 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
+++.++..|+.....+...+..|+..+..|+.....|+.+...|..........
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~ 148 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQ 148 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666665554444333
No 349
>PHA03161 hypothetical protein; Provisional
Probab=70.58 E-value=28 Score=31.62 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 270 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 270 RESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
|.+-|+.+.+|+. .+|+..|..|..+.+..++|+..|..
T Consensus 44 ~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~ 82 (150)
T PHA03161 44 KKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKA 82 (150)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444443 45556666666666666666555543
No 350
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.40 E-value=40 Score=37.55 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 018605 310 EECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 310 ~e~~~L~~EN~~LkeeL~~L 329 (353)
+.|..|+.||-.|..++..|
T Consensus 97 ~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVL 116 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333
No 351
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=70.33 E-value=36 Score=41.83 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=60.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 266 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 266 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
.+.-.+.+++++.-=++.+..++++++.|+.|+.+|+..+..+......+..|+.++.++|..+...
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 3446789999999999999999999999999999999999999999999999999999999997754
No 352
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=70.22 E-value=91 Score=29.86 Aligned_cols=43 Identities=12% Similarity=0.256 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.|+..+..++.+...+...+..|+..+..|+.....|+.++..
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444333
No 353
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.22 E-value=7 Score=41.14 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccccCC
Q 018605 47 PFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPP 85 (353)
Q Consensus 47 ~y~~s~va~~~phPYmWg~q~~m~pPyGtp~PY~a~yp~ 85 (353)
++|+. ++|||.+= .+.+.||--.||.+|||-
T Consensus 424 p~f~m----~~~hP~~~----~p~~~~g~~~P~~~mpp~ 454 (483)
T KOG2236|consen 424 PSFPM----FQPHPPES----NPPANFGQANPFNQMPPA 454 (483)
T ss_pred CCCCc----cCCCCCCC----CCcccccccCccccCCCC
Confidence 56665 36677653 466678877787777763
No 354
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=70.07 E-value=14 Score=29.68 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 292 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..|+.+...|..++..|+.+...|..+...|+..|..+-
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555556666666665555543
No 355
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=70.03 E-value=41 Score=27.36 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+|..++...+.|+..|..-+..|+.++.....-|..|..++..++
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666665554
No 356
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=69.87 E-value=57 Score=34.70 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQR 307 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~ 307 (353)
|+.++..++.++..|..++..
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~ 85 (475)
T PRK10361 65 LNNEVRSLQSINTSLEADLRE 85 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 357
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=69.82 E-value=29 Score=27.73 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEEC--------------EKLTSENNSIKEDLSRL 329 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~--------------~~L~~EN~~LkeeL~~L 329 (353)
+..|+.+-+.+.-|+-.||+++..+++|+ ..|..|...+++.|..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 44555666666666666666666666554 34556666666665544
No 358
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.80 E-value=53 Score=36.50 Aligned_cols=8 Identities=38% Similarity=0.995 Sum_probs=5.1
Q ss_pred CCccccCCC
Q 018605 78 PYQAIYPPG 86 (353)
Q Consensus 78 PY~a~yp~G 86 (353)
|+. |||+.
T Consensus 272 pl~-~~p~~ 279 (717)
T PF10168_consen 272 PLP-MQPPA 279 (717)
T ss_pred cee-cCCCC
Confidence 665 77763
No 359
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=69.75 E-value=20 Score=38.05 Aligned_cols=49 Identities=18% Similarity=0.349 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
|+..++.+...+..|+....+++.++..|+.++..|..+-+.|+.+|+.
T Consensus 444 k~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 444 KLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666666666666666666666666666666554
No 360
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=69.73 E-value=17 Score=32.72 Aligned_cols=40 Identities=18% Similarity=0.430 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENN 320 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~---el~~L~~e~~~L~~EN~ 320 (353)
..+++.|+.+|.....+...|+. -++.|+.+++.|..+|.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555 45555555555555555
No 361
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=69.50 E-value=36 Score=33.65 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
+|..||+++..++.++.....+|..++.+
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34445555555555555555555555444
No 362
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=69.44 E-value=12 Score=38.96 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEK 314 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 314 (353)
++++.|++.+.+.|+..|..|..+++.|+.++..
T Consensus 289 ~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 289 LQRARELENRQKKLESTNQELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777777777777777666553
No 363
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=69.43 E-value=17 Score=38.15 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
+++|...++.|+.+|.+|+..+..|++.+..++.+.-+||..+..++-....+.+..
T Consensus 408 ~~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~ak~~~ 464 (514)
T KOG4370|consen 408 EEELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNAKQQF 464 (514)
T ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 445555666677777777777777777777777777777777666665555444433
No 364
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=69.34 E-value=34 Score=27.85 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.+++|...|..|.....+|...++.++.+.+....|+.+-.++|...
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 446778888888888888888888888888888888888888887654
No 365
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=69.19 E-value=72 Score=27.23 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+..|..+++.++++|+.|..+...|+.++..|+.+-.-|.++..
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR 95 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERAR 95 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34455555566666666666666666666666666333433333
No 366
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=69.13 E-value=11 Score=33.03 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=17.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNL 301 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L 301 (353)
.|..|+.++|+.. .++++++|+.+++.|+.+.+.+
T Consensus 97 ~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 97 WRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555554444332 2344555555555555555444
No 367
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=69.04 E-value=72 Score=33.43 Aligned_cols=41 Identities=20% Similarity=0.411 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+..|..+-+.|+.++..|.++..+|..+...|..+-+.|+
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555444
No 368
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.86 E-value=18 Score=39.27 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+++++|+.+|+.|..+...|..++..|+.++.++..|..+++.++..+
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444
No 369
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.85 E-value=63 Score=34.99 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLR 302 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~ 302 (353)
++|+.++..++.+...|.
T Consensus 212 ~~le~el~~l~~~~e~l~ 229 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLA 229 (650)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 370
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.74 E-value=46 Score=38.46 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
|..+|..++..++.++.+++.+...|+.++..|+
T Consensus 823 E~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 823 EHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444333
No 371
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=68.64 E-value=12 Score=39.90 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhh
Q 018605 294 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP-EAVANLE 339 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~-~~i~~L~ 339 (353)
|+.+|..|..++..|.+.+...+.|...|+++|.+|..| ..+..+.
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 52 (512)
T TIGR03689 6 LQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFL 52 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 444444444555555555566666677777777777653 3344444
No 372
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=68.55 E-value=10 Score=40.38 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
+.+|+.++..|.++|..|...+...++++..|+.|..+|.+-
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p 44 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQP 44 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999999998753
No 373
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=68.53 E-value=15 Score=38.82 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
|+.|+.....-..+...|+++.+.|+.+|..|-++|.+|+.
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 56677777777888889999999999999999999998873
No 374
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=68.50 E-value=10 Score=30.77 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 292 ETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
..|..||..|+.+|+.|+.+++++..
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666555444444333
No 375
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=68.39 E-value=42 Score=26.13 Aligned_cols=43 Identities=7% Similarity=0.303 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+++++..++.....+..++..|+.....++.+...|..+|.+|
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444
No 376
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=68.32 E-value=56 Score=36.07 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcCCch
Q 018605 317 SENNSIKEDLSRLCGPEA 334 (353)
Q Consensus 317 ~EN~~LkeeL~~L~g~~~ 334 (353)
.++++|..+|.+|.|...
T Consensus 300 ~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHhhcCce
Confidence 555666666666665443
No 377
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=68.28 E-value=24 Score=35.66 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
-|+|..+.+++|+.+.+.|..+|...+..+..|...+..|..--.-|.+.|..
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 46777788899999999999999999999988888888888777777766643
No 378
>PRK14161 heat shock protein GrpE; Provisional
Probab=68.27 E-value=23 Score=32.71 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el 305 (353)
+++++|..++..+.++...++++.
T Consensus 33 ~e~~elkd~~lR~~AefeN~rkR~ 56 (178)
T PRK14161 33 AEIEELKDKLIRTTAEIDNTRKRL 56 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 379
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=68.12 E-value=24 Score=30.44 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEK 314 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~ 314 (353)
.|+..++.|+.+...++.+++.+......
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333
No 380
>PRK14148 heat shock protein GrpE; Provisional
Probab=68.12 E-value=18 Score=33.99 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
++++++|..++..+.++...++++..+-+
T Consensus 53 ~~e~~elkd~~lR~~Ae~eN~rKR~~rE~ 81 (195)
T PRK14148 53 EDSCDQFKDEALRAKAEMENIRKRAERDV 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444433
No 381
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=68.05 E-value=19 Score=33.28 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRN-------------------------------LRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~-------------------------------L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+++|.++++.-...=+..+.. |+.++..|+++++.|..+|..|+.++..
T Consensus 57 rk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v~~~e~~kl~~~~e~L~~e~~~L~~~~~~ 136 (170)
T PRK13923 57 RKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDVLSEQIGKLQEEEEKLSWENQTLKQELAI 136 (170)
T ss_pred HHHHHHHHHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCchhhhhhhcCC
Q 018605 329 LCGPEAVANLEQSNP 343 (353)
Q Consensus 329 L~g~~~i~~L~~~~~ 343 (353)
+. ++...|..+++
T Consensus 137 ~~--eDy~~Li~Im~ 149 (170)
T PRK13923 137 TE--EDYRALIVIMN 149 (170)
T ss_pred HH--HHHHHHHHHHH
No 382
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=67.95 E-value=39 Score=37.97 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
|+.+.+.|.+.++.++.||.+|+..
T Consensus 453 lq~kneellk~~e~q~~Enk~~~~~ 477 (861)
T PF15254_consen 453 LQSKNEELLKVIENQKEENKRLRKM 477 (861)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455444443
No 383
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=67.94 E-value=43 Score=25.69 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 292 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
..|+.-|..|..+. .|.+++..|+.||.+|+..|.+
T Consensus 23 ~~l~rY~~vL~~R~-~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 23 NFLKRYNKVLLDRA-ALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666676665 4556678899999999888765
No 384
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=67.80 E-value=11 Score=32.98 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
++.+.+...++++++++.|+.+..+|..+++.++
T Consensus 99 s~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 99 SARKEAKKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444445666677777777777777666554
No 385
>PLN02678 seryl-tRNA synthetase
Probab=67.79 E-value=43 Score=35.16 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.|..++..|++++..|+.+...|.++|..
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555554443
No 386
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=67.56 E-value=23 Score=30.36 Aligned_cols=42 Identities=36% Similarity=0.456 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 319 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 319 (353)
+-=|.-+++|-+||+..+.||-.|+.+.+.|-+-++.|..--
T Consensus 66 LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaS 107 (120)
T KOG3650|consen 66 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSAS 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhh
Confidence 445677899999999999999999999999988887776543
No 387
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=67.53 E-value=35 Score=26.44 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLR-DELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~-~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+..+++++.-+..|+.|...+- ..-..+..++...+.+...|+.+|.
T Consensus 31 e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 31 ERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555554442 3334455555556666666665554
No 388
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=67.34 E-value=25 Score=32.84 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L 308 (353)
.=.|.+++.|+.+|..|+.+++.|
T Consensus 43 SL~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 43 SLVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555555555
No 389
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=67.32 E-value=38 Score=32.70 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
-+..|+.+.......++.|..||..|+++|.+|.+..
T Consensus 106 ~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 106 HIQSLERKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4556777777777788888888888888888887655
No 390
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.30 E-value=1.8 Score=47.25 Aligned_cols=59 Identities=25% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 253 WIQDERELKRQKR-KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 253 ~~~DEre~KR~RR-k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
.+.||-+.=|.+. +..-.|+.=..=++|-+.+.+|..+|+.|+.+|..|...+..|.++
T Consensus 295 ~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEee 354 (713)
T PF05622_consen 295 ALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEE 354 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556644444443 3333343333333678889999999999999888776655555444
No 391
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=67.28 E-value=31 Score=32.62 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
..++.++..++.+++.++.+...++.++..
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 134 (322)
T TIGR01730 105 DDAKAAVEAAQADLEAAKASLASAQLNLRY 134 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444445555555555544443
No 392
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=67.25 E-value=40 Score=29.29 Aligned_cols=31 Identities=35% Similarity=0.471 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|+.++..+..++..|..+-..+..++..+
T Consensus 58 ~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 58 EELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444433333333
No 393
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.18 E-value=32 Score=38.31 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
Q 018605 290 RVETLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~---e~~~L~~EN~~LkeeL~~L~g 331 (353)
....|+.||-.|+++|..|++ +++.|+-|+.+|.+++.-|..
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ 142 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNS 142 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777754 566666666666666665543
No 394
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=67.14 E-value=26 Score=27.98 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSEN 319 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 319 (353)
|...|..|..|+.+|..++..+++++..++.+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777776666555
No 395
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.99 E-value=24 Score=34.39 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
..|++++..|..|...|...+...+
T Consensus 60 ~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 60 RSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 396
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=66.98 E-value=13 Score=37.05 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhhhcCCC
Q 018605 296 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP-EAVANLEQSNPT 344 (353)
Q Consensus 296 ~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~-~~i~~L~~~~~~ 344 (353)
.++..|+.++..++.++..++.|...|+++|.++..+ ..+..+...+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDD 55 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecC
Confidence 3444455555555555555666666666666666553 334444444433
No 397
>PLN02320 seryl-tRNA synthetase
Probab=66.90 E-value=21 Score=38.12 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 304 ELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 304 el~~L~~e~~~L~~EN~~LkeeL 326 (353)
++..|++++..|+.+...+.++|
T Consensus 138 ~~k~lk~~i~~le~~~~~~~~~l 160 (502)
T PLN02320 138 EGKNLKEGLVTLEEDLVKLTDEL 160 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 398
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=66.69 E-value=88 Score=32.83 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
++++..|..+...|+.+...|..+...|..+.+.|.
T Consensus 136 qQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~ 171 (499)
T COG4372 136 QQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQ 171 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333343333333333333333333333
No 399
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=66.68 E-value=13 Score=36.90 Aligned_cols=39 Identities=38% Similarity=0.588 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
.|+.+++.|+.+...|+.++..+++++..++.++.+|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555566666666666666666666666666666653
No 400
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.66 E-value=58 Score=39.21 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
+++.++.+...+..++..++.++..++.+...|
T Consensus 363 ~Lee~eeeLeeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 363 RLEEQNEVVEEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 401
>PHA03155 hypothetical protein; Provisional
Probab=66.63 E-value=8.3 Score=33.49 Aligned_cols=29 Identities=34% Similarity=0.538 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018605 305 LQRLSEECEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 305 l~~L~~e~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
++.|..++.+|+.||..|+.+|..--+++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~ 38 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPE 38 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 46677777888899999998887654444
No 402
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.39 E-value=52 Score=38.62 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 275 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 275 RSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.+-.+++..+..|+..+..++.|..+...++..|+.+...|......|++++..+
T Consensus 535 ~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 535 ESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555554444444444444444444444444444555544444
No 403
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.34 E-value=40 Score=36.72 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
.+...|+.|..+++.+-.+|-.++..|+.||-.|..++..|++.+
T Consensus 149 ~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQ 193 (772)
T KOG0999|consen 149 DQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQ 193 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhh
Confidence 344445555555555556666666677777777766666666543
No 404
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=66.29 E-value=15 Score=38.29 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhcCCC
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 344 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g-~~~i~~L~~~~~~ 344 (353)
||+|.++ |++.++.|+.+..-++.+.. ...|+.|+..++++|..|++ +-.|.++...+++
T Consensus 56 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (438)
T PTZ00361 56 CRLRLLK----LERIKDYLLLEEEFITNQEA-----QKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDE 116 (438)
T ss_pred hHHHHHH----HHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCC
Confidence 6666543 44444445444444433321 13577788888888888877 4456777666555
No 405
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=66.21 E-value=9.5 Score=33.30 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 304 ELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 304 el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
-++.|..++.+|+.||..|+.+|..-.+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3567778888999999999999998776
No 406
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=66.19 E-value=25 Score=31.11 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..++.|+.++...+...+.-...|..|+..+..+..++..+..++..+-
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVL 89 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 3466788888888888888888888888888888888888877754443
No 407
>PRK10963 hypothetical protein; Provisional
Probab=66.14 E-value=18 Score=34.13 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSN---ENRNLRDELQRLSEE 311 (353)
Q Consensus 285 eeLE~rv~~Le~---EN~~L~~el~~L~~e 311 (353)
.+||.++..|-. +|..+..++..|.-.
T Consensus 54 ~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 54 HVLEEEMTLLMEQAIANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444443 666666666555443
No 408
>PRK14143 heat shock protein GrpE; Provisional
Probab=66.12 E-value=16 Score=35.26 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 018605 287 LQARVETL 294 (353)
Q Consensus 287 LE~rv~~L 294 (353)
|+.+++.|
T Consensus 79 l~~e~~el 86 (238)
T PRK14143 79 LKQELEEL 86 (238)
T ss_pred HHHHHHHH
Confidence 33333333
No 409
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=66.09 E-value=1e+02 Score=30.94 Aligned_cols=6 Identities=83% Similarity=0.938 Sum_probs=2.2
Q ss_pred hHHHHH
Q 018605 256 DERELK 261 (353)
Q Consensus 256 DEre~K 261 (353)
+|.+.|
T Consensus 9 ~E~e~K 14 (294)
T COG1340 9 DELELK 14 (294)
T ss_pred hHHHHH
Confidence 333333
No 410
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.07 E-value=37 Score=37.42 Aligned_cols=45 Identities=29% Similarity=0.477 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+..|+.++..|+.+...|..++..+.++++.+..++..+..+|..
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 287 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLES 287 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555544444444443333
No 411
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=66.03 E-value=62 Score=28.05 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.++.++.....++.++.....|-.-=....+|+...+.||..|+..|..
T Consensus 12 ~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 12 AQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 3344444444444444444444444445556667777777777777654
No 412
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=66.00 E-value=15 Score=28.44 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
++..|+.-|.-|+.|...+ +..|-.|++.|+.+|..|.-+
T Consensus 4 qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~k 43 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTFK 43 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccccee
Confidence 4555566666666555432 223334444444444444433
No 413
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=65.85 E-value=43 Score=27.78 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.++.++..|...++.|..+|..|.++|..++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677888888889999999999999988775
No 414
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=65.81 E-value=29 Score=35.91 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 294 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
|..+..+|++++..|+++...++.+...+...|--
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444444444444444444444444444444333
No 415
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.65 E-value=39 Score=37.46 Aligned_cols=63 Identities=30% Similarity=0.384 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH
Q 018605 269 NRESARRSRLRKQAE-----CEELQARVETLSNENRNLRDELQRLS----------------------------EECEKL 315 (353)
Q Consensus 269 NRESARRSR~RKq~~-----leeLE~rv~~Le~EN~~L~~el~~L~----------------------------~e~~~L 315 (353)
+|...--.+.|+... ++....++..|+.||..|+.++..-- .....|
T Consensus 485 ~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~L 564 (716)
T KOG4593|consen 485 SSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEEL 564 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhcC
Q 018605 316 TSENNSIKEDLSRLCG 331 (353)
Q Consensus 316 ~~EN~~LkeeL~~L~g 331 (353)
++||..|++.|..|.+
T Consensus 565 qaE~~~lk~~l~~le~ 580 (716)
T KOG4593|consen 565 QAELERLKERLTALEG 580 (716)
T ss_pred HHHHHHHHHHHHHHhc
No 416
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=65.52 E-value=30 Score=37.40 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el 305 (353)
.+++.||.+++.|+.+..+|..++
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777776655544
No 417
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=65.50 E-value=46 Score=31.06 Aligned_cols=66 Identities=29% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 272 SARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 272 SARRSR~RK-q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
|||..+... +..+.+|+.+++.|..||..|+.--.+....+..+...+..|-.-|.... ..|+.|.
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~--eEvr~Lr 74 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHN--EEVRVLR 74 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHH
No 418
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=65.40 E-value=17 Score=35.97 Aligned_cols=48 Identities=27% Similarity=0.348 Sum_probs=38.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 267 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 267 ~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
+=|.|+-+.+ =+.+++.|..+|..|+..|.+||+++...++.++.|+.
T Consensus 66 ~y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 66 IYNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4466665443 46788999999999999999999999999888888774
No 419
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=65.40 E-value=90 Score=30.81 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 252 QWIQDERELKRQKRKQSNR---------------ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 252 ~~~~DEre~KR~RRk~~NR---------------ESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
+.+.-|-++|..|.+.-.| ..++.--..-++.|+.|+.....|+.....-+.++++.++.++.|.
T Consensus 138 dlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 138 DLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHHHhc
Q 018605 317 -------SENNSIKEDLSRLC 330 (353)
Q Consensus 317 -------~EN~~LkeeL~~L~ 330 (353)
.|-..|.++|..+.
T Consensus 218 ~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 218 SVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred hcChHHHHHHHHHHHHHHHHH
No 420
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.21 E-value=32 Score=33.33 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.|.-+|..++.++.-+..++.+...|..+++.|+.+.+.. |..|+.++.+..
T Consensus 157 ~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 157 RRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3456666666666666666666666777777776666555 555777776664
No 421
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=65.06 E-value=19 Score=35.62 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
-++.|+.++..|+.||.+|+.+++.|+.++.....=...+
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777766665555444443333
No 422
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=65.03 E-value=84 Score=26.45 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
+.++..+...+..|..|...+..-+.-...+...+.+|+.
T Consensus 35 ~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~ 74 (110)
T PF10828_consen 35 KAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQ 74 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333333333333333
No 423
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=65.01 E-value=44 Score=26.58 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..+..-..|+..+..-+.+...|...+..|..++..|.
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555544
No 424
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.01 E-value=18 Score=35.58 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
.+.+|+.++..|+.+..+|+. +++|+.+.+..+.+....-.+|..+.+..
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~ 106 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGR 106 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 356777777777777777777 66666666666666666666666666553
No 425
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=64.96 E-value=1e+02 Score=30.94 Aligned_cols=41 Identities=20% Similarity=0.474 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
.+.+|..++..|..+-..|-.++..|+.+...+-.....|.
T Consensus 49 kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~ 89 (294)
T COG1340 49 KVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELR 89 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333333333
No 426
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=64.94 E-value=31 Score=35.61 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.-..|+.....|.+++.+|..+...|+++|..+
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555566666666666666666666666665
No 427
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=64.88 E-value=22 Score=28.78 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
...+..+.+.|..+...|+.++..|+.|...|.
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555555555555553
No 428
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=64.45 E-value=9.5 Score=39.95 Aligned_cols=39 Identities=38% Similarity=0.628 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
++|..+|..|..+|..|+.+++.|+-.|..+..||.-|+
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~ 84 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLL 84 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhh
Confidence 345555555666666666666666666666666665554
No 429
>PRK14156 heat shock protein GrpE; Provisional
Probab=64.37 E-value=17 Score=33.70 Aligned_cols=52 Identities=13% Similarity=0.221 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcC
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 342 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~ 342 (353)
++.|+.+...|+.++.++..+++-++....+=++++........+.+|...+
T Consensus 36 l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVl 87 (177)
T PRK14156 36 LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSL 87 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3333333333333333333333333333333333333333333344444333
No 430
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=64.35 E-value=65 Score=29.66 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEEC-----EKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~-----~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
++++-|+.+.+.|..+..+|...+..+..++ .+=+.|..++..+|..|. +.|+.+++.+..
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le--~~~~~~e~~~~~ 150 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLE--ARLKKLEPIYIT 150 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHH--HHHHHHHhhccC
Confidence 3445555666666666666655555554432 233466666667777766 666666665544
No 431
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=64.29 E-value=1.2e+02 Score=27.83 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=17.0
Q ss_pred CCcchhhhHHHHHHHHHHHHhHHHHHHH
Q 018605 249 MPDQWIQDERELKRQKRKQSNRESARRS 276 (353)
Q Consensus 249 ~~~~~~~DEre~KR~RRk~~NRESARRS 276 (353)
+-|....+|++.||++...--+.-...-
T Consensus 40 llDpa~~eEre~rR~kq~E~q~ai~~Qi 67 (157)
T PF15236_consen 40 LLDPAQIEERERRRQKQLEHQRAIKQQI 67 (157)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888888877655444444433
No 432
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=64.29 E-value=36 Score=28.17 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.|+.....|..++..|..++..|..+...|+.+|..+.
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555556666666666666666666666666553
No 433
>PLN02678 seryl-tRNA synthetase
Probab=64.27 E-value=32 Score=36.13 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 313 EKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 313 ~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
..|..|...|..++..+. +.+..+...+|.
T Consensus 81 ~~Lk~ei~~le~~~~~~~--~~l~~~~~~iPN 110 (448)
T PLN02678 81 KELKKEITEKEAEVQEAK--AALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 333333333333333333 333344444443
No 434
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=64.10 E-value=14 Score=28.75 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAV 335 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i 335 (353)
|+.+|..|+.-..-|+.+.... +..|..|...|+.++.+|.=.-.+
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~kL~m 46 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTFKLIM 46 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccceeeee
Confidence 4566666666666666665443 567888889999888887643333
No 435
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=64.01 E-value=1.3e+02 Score=29.97 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018605 254 IQDERELKRQKRKQSNRESARRSRLRKQAECEE 286 (353)
Q Consensus 254 ~~DEre~KR~RRk~~NRESARRSR~RKq~~lee 286 (353)
+.+|+|+...|+.+..=+..|..-+-..++|++
T Consensus 149 V~EEeEL~~lr~~q~~fe~~R~aEl~e~qrlE~ 181 (291)
T PF06098_consen 149 VMEEEELAALRRQQRAFEELRNAELAEVQRLEE 181 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888887776644444444333333333
No 436
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.98 E-value=71 Score=37.04 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDE 304 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~e 304 (353)
...|++|+.+++.|+.+...|...
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~ 470 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTEL 470 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444443333
No 437
>PLN02320 seryl-tRNA synthetase
Probab=63.98 E-value=49 Score=35.39 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 314 KLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 314 ~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
.|+.+...|.+++..+. +.+..+...+|.
T Consensus 141 ~lk~~i~~le~~~~~~~--~~l~~~~l~iPN 169 (502)
T PLN02320 141 NLKEGLVTLEEDLVKLT--DELQLEAQSIPN 169 (502)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 33333333333333333 334444444444
No 438
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=63.95 E-value=32 Score=35.18 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDE 304 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~e 304 (353)
++++.|+.+++.|+.+..+|..+
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666555554
No 439
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.93 E-value=25 Score=39.66 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+|+++|...+..|+....+|.-+++.|++....|..||..|.+++..+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666666666666666666666666666665555
No 440
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=63.92 E-value=18 Score=33.71 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
++..|+.++..|+.++.++..+++-++....+=++++.+......+.+|.
T Consensus 44 ~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlL 93 (193)
T COG0576 44 EIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLL 93 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333434443443333333333333333333333333333333
No 441
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=63.91 E-value=1e+02 Score=32.83 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el 305 (353)
++..+..++..++.++.+|..++
T Consensus 68 ~l~~~~~~~~~~~~~~~~l~~~l 90 (475)
T PRK10361 68 EVRSLQSINTSLEADLREVTTRM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 442
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.90 E-value=36 Score=27.88 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=19.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 272 SARRSRLRKQ----AECEELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 272 SARRSR~RKq----~~leeLE~rv~~Le~EN~~L~~el 305 (353)
|-++-|.||. .+++.|..++..|..+|..|+.++
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555554 345556666666666666666554
No 443
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=63.85 E-value=24 Score=37.82 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+.+-.++.++..||..|..+|-.|++++..++.|+..|.+-|....
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455556666666666666666666666666665555443
No 444
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=63.80 E-value=69 Score=32.20 Aligned_cols=51 Identities=25% Similarity=0.420 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 281 QAECEELQARVETLSNEN------------------RNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN------------------~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
..+.+.|+.+++.|+.+. +.|-.-|...++++.+|+.+-..|+.++..|+|
T Consensus 50 a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL~dq~adLhg 118 (389)
T KOG4687|consen 50 AARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREALLDQKADLHG 118 (389)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhc
Confidence 445566666666665543 445666677777788888888888888888875
No 445
>PHA02109 hypothetical protein
Probab=63.78 E-value=20 Score=33.61 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEK 314 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 314 (353)
|.+++-+|+.+++.|..|..+|+.++..++++...
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~ 225 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKR 225 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665555554443
No 446
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.76 E-value=34 Score=34.17 Aligned_cols=42 Identities=36% Similarity=0.431 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 273 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 314 (353)
Q Consensus 273 ARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 314 (353)
++..=..++..+.+|+.++..|+.+......+...|+.+.+.
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445555555555555555555544444444444433
No 447
>PRK09343 prefoldin subunit beta; Provisional
Probab=63.63 E-value=38 Score=29.10 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
..|..+++.+..++..|+.+...|+.+|..++ ..|+.+.+
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q--~~l~~ll~ 113 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQ--AKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 44556666666666666666666666666665 44444444
No 448
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=63.55 E-value=16 Score=34.59 Aligned_cols=53 Identities=30% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhc
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRL-----------------------SEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L-----------------------~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.|++.+.+-|..++..|+.++..|+..+..+ ......|..+..+|+++|...+
T Consensus 76 qr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er 151 (202)
T PF06818_consen 76 QRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRER 151 (202)
T ss_pred HHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHH
No 449
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=63.48 E-value=17 Score=30.85 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 296 NENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 296 ~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.+...+..++..|+.++.+|+.||..|+.-+.
T Consensus 71 ~~~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 71 SELAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=63.36 E-value=1.3e+02 Score=28.33 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+.++.++..|+......-.+...+...+..|..++..|..+|.
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433333
No 451
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=63.29 E-value=35 Score=35.77 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++.+++.|.++...|+.....|...|..|.
T Consensus 198 ~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 198 LKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555555554
No 452
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=63.19 E-value=30 Score=28.54 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
..|+.|..-+..|+..|..|..+|..|-+.+.+.+.|.++..
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888999999999998888888877776655443
No 453
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=63.17 E-value=33 Score=28.36 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 321 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~ 321 (353)
..|+.+++.|+.+...|..++..+..++..|+.+...
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 454
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=63.15 E-value=74 Score=32.00 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 018605 270 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 334 (353)
Q Consensus 270 RESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~ 334 (353)
-|+++|-....+.++.+++.....-+........+-+.|++.+.+|.+||--|+++|...+...+
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666667766665555555555666677888888889999999999888775444
No 455
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=63.10 E-value=64 Score=39.51 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 257 ERELKRQKRKQSN-RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 257 Ere~KR~RRk~~N-RESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++++.++|+++.+ +.=.|..+.-+...+..+..+|+.+..++..|...+..++..+..|..+...|..+|....
T Consensus 811 ~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~ 885 (1822)
T KOG4674|consen 811 ERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAK 885 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4666777776666 4445666777777888888999999999999999999999999999998888888887764
No 456
>PHA00728 hypothetical protein
Probab=63.02 E-value=8.8 Score=33.93 Aligned_cols=46 Identities=30% Similarity=0.458 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 337 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~ 337 (353)
.+|++|+.||.+|++++..|..-+. .|...=.++|..+..+..+++
T Consensus 5 teveql~keneelkkkla~leal~n---n~~~~~~e~lqEiEnPYTVTN 50 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMN---NESAEEDEELQEIENPYTVTN 50 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHc---CCCchhhhhHHHhcCCceehh
Confidence 4567788899988888877643221 122244556777777766554
No 457
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=63.00 E-value=63 Score=36.72 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=35.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 262 RQKRKQSNRESARRSRLRKQAECEELQARVETLSN--ENRNLR-----------DELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~--EN~~L~-----------~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
|..--+..|+.-|.-|+.++-+..+|+.++..|+. -++... .-=..++.++++|..|+.+|..+|..
T Consensus 609 Rl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~ 688 (988)
T KOG2072|consen 609 RLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQY 688 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445666666666665555666666655552 011000 01122344566677777777777666
Q ss_pred hc
Q 018605 329 LC 330 (353)
Q Consensus 329 L~ 330 (353)
+.
T Consensus 689 q~ 690 (988)
T KOG2072|consen 689 QE 690 (988)
T ss_pred HH
Confidence 54
No 458
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.95 E-value=37 Score=28.43 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 018605 312 CEKLTSENNSIKE 324 (353)
Q Consensus 312 ~~~L~~EN~~Lke 324 (353)
+..|..+...|+.
T Consensus 83 i~~lek~~~~l~~ 95 (110)
T TIGR02338 83 VKTLQRQEERLRE 95 (110)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 459
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=62.89 E-value=47 Score=34.31 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNE------NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~E------N~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+.++++|+..+..|+.. -...+.++..|.+.+..|..+...|++++..|.
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444431 234556667777777777777777777777665
No 460
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=62.89 E-value=34 Score=27.37 Aligned_cols=31 Identities=29% Similarity=0.208 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..+..++-.|+.++..|+.|+..++..|.++
T Consensus 39 ~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 39 EELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555444
No 461
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=62.62 E-value=40 Score=33.32 Aligned_cols=84 Identities=25% Similarity=0.272 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 018605 251 DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL-------QRLSEECEKLTSENNSIK 323 (353)
Q Consensus 251 ~~~~~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el-------~~L~~e~~~L~~EN~~Lk 323 (353)
++...-|+++..-||-+-.-.=+-.--.+=..++.++|.+|..|+--|..|..+| -.+-+.-.+++.|+..|.
T Consensus 186 ~~l~dkekEl~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acE 265 (311)
T PF04642_consen 186 DQLSDKEKELESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACE 265 (311)
T ss_pred cccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHhcCCch
Q 018605 324 EDLSRLCGPEA 334 (353)
Q Consensus 324 eeL~~L~g~~~ 334 (353)
++|..|.-.+.
T Consensus 266 Ekl~kmeE~Qa 276 (311)
T PF04642_consen 266 EKLKKMEEEQA 276 (311)
T ss_pred HHHhcccHHHH
No 462
>PRK10698 phage shock protein PspA; Provisional
Probab=62.62 E-value=1.4e+02 Score=28.37 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 259 ELKRQKRKQSNRESARRSRLRKQAECEE----------------LQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 259 e~KR~RRk~~NRESARRSR~RKq~~lee----------------LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
..|+..|+...-+..-.-+.+|-.-.-. .+.++..|+.+...+...+..|+..+..|+.....+
T Consensus 53 ~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 53 EKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q 018605 323 KEDLSRL 329 (353)
Q Consensus 323 keeL~~L 329 (353)
+.+-..|
T Consensus 133 k~k~~~L 139 (222)
T PRK10698 133 RARQQAL 139 (222)
T ss_pred HHHHHHH
No 463
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=62.53 E-value=31 Score=29.11 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARV-ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv-~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
+.......-|+.|...+.+=..+|++|-..+ +.-......=+.+-..++.++..|+.+.......|..|+ ..|..|+
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq--~qL~~LK 78 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQ--AQLKELK 78 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCT--SSSSHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_pred hcC
Q 018605 340 QSN 342 (353)
Q Consensus 340 ~~~ 342 (353)
..+
T Consensus 79 ~v~ 81 (100)
T PF06428_consen 79 TVM 81 (100)
T ss_dssp HCT
T ss_pred HHH
No 464
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=62.44 E-value=33 Score=32.05 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCCCCCCcccC
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGEEEN 352 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~~~~~~~~~ 352 (353)
.|.++++...+-+++.+. .+|+.+++.|..++++++.+...|..+|.... ..+..+.+.-+.+..-+++.
T Consensus 91 ~R~~~~e~~kee~~~~e~-----~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~--~el~~~~q~~p~~~~sa~~k 160 (181)
T KOG3335|consen 91 WRQARKERKKEEKRKQEI-----MELRLKVEKLENAIAELTKFFSQLHSKLNKPE--SELKPIRQAPPNPGPSAENK 160 (181)
T ss_pred HHhhhcchhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc--ccccccccCCCCCCchhhcC
No 465
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=62.36 E-value=59 Score=32.10 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 256 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE------NRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 256 DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~E------N~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+|++..-++ +.++++.=+|-..-+ .++..|+.++..|+.+ +..++.....+......|+.++..|+.+|.+.
T Consensus 151 ~ekd~~i~~-~~~~~e~d~rnq~l~-~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~a 228 (264)
T PF07246_consen 151 EEKDQLIKE-KTQERENDRRNQILS-HEISNLTNELSNLRNDIDKFQEREDEKILHEELEARESGLRNESKWLEHELSDA 228 (264)
T ss_pred HHHHHHHHH-HhhchhhhhHHHHHH-HHHHHhhhhHHHhhchhhhhhhhhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q ss_pred cCCchhhhhhhcC
Q 018605 330 CGPEAVANLEQSN 342 (353)
Q Consensus 330 ~g~~~i~~L~~~~ 342 (353)
. .++..|...+
T Consensus 229 K--~~~~~~~~~~ 239 (264)
T PF07246_consen 229 K--EDMIRLRNDI 239 (264)
T ss_pred H--HHHHHHHhcc
No 466
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=62.29 E-value=69 Score=26.19 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 268 SNRESARRSRLRKQAECEELQARVETLSNENRNLRD------------------ELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 268 ~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~------------------el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+++.+-+..|..=++++..|+.+++.=..-+..|.. .+..|-.++..|+.|...|..+|..|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred c
Q 018605 330 C 330 (353)
Q Consensus 330 ~ 330 (353)
+
T Consensus 81 ~ 81 (88)
T PF14389_consen 81 Y 81 (88)
T ss_pred H
No 467
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=62.21 E-value=17 Score=31.24 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
.++..|..+..+|++||.-|+-+++.|-.-+....+|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 468
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=62.18 E-value=60 Score=37.60 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+-.+-.+.||+=-...-+++-..++++-.+.-.|+.++..|..+++.|.+++.+|...+..|...-+.|
T Consensus 373 ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L 441 (1195)
T KOG4643|consen 373 RALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKL 441 (1195)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.13 E-value=58 Score=35.36 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++.+...+.--.+-++-|.-+.+=+.-+.-++.-+..++..++.+-..++.|+.+|+..+.|+..|+.+...|+
T Consensus 248 ~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 248 EEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>PRK06835 DNA replication protein DnaC; Validated
Probab=62.10 E-value=67 Score=32.19 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Q 018605 254 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNL---------------RDELQRLSEECEKLTSE 318 (353)
Q Consensus 254 ~~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L---------------~~el~~L~~e~~~L~~E 318 (353)
+..+....-.|.-.+.|..+++-.+++++++-.--=++..|..+...+ ...++.|++++..|+.+
T Consensus 1 ~~~~~~~~i~r~y~~~r~~~~~~~~~r~~e~~~~~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 80 (329)
T PRK06835 1 MIKGYISEILKEYEKRRDKEELELKNRKEEVYKKIPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVK 80 (329)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 018605 319 NNSIKED 325 (353)
Q Consensus 319 N~~Lkee 325 (353)
...|...
T Consensus 81 ~~~lL~~ 87 (329)
T PRK06835 81 KAELLVS 87 (329)
T ss_pred HHHHHHH
No 471
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=62.10 E-value=66 Score=37.61 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q 018605 259 ELKRQKRKQSNRESARRSR----------LRKQAECEELQARVETLSNE--------------NRNLRDELQRLSEECEK 314 (353)
Q Consensus 259 e~KR~RRk~~NRESARRSR----------~RKq~~leeLE~rv~~Le~E--------------N~~L~~el~~L~~e~~~ 314 (353)
|+=+.+|...+.+-++.-. .|++++.|..-++.+.+..+ |.+|.+++..+.++...
T Consensus 204 ~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~ 283 (1109)
T PRK10929 204 ELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDL 283 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhcC
Q 018605 315 LTSENNSIKEDLSRLCGPEAVANLEQSN 342 (353)
Q Consensus 315 L~~EN~~LkeeL~~L~g~~~i~~L~~~~ 342 (353)
|..+|.+.+.++..+. +..+++..++
T Consensus 284 l~~~~~~~~~~l~~~~--q~~~~i~eQi 309 (1109)
T PRK10929 284 IASQQRQAASQTLQVR--QALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHH
No 472
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=62.02 E-value=37 Score=34.43 Aligned_cols=59 Identities=27% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhc
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~ 341 (353)
.++.++|+.+.++|++.+...+++++++.+...........-+.+|..|. ..+..++..
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~--~sLk~~~~~ 61 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELK--KSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccC
No 473
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.99 E-value=29 Score=28.87 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
++.|+.+++.|+.+...|..++..++.++..|+.+.+.+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 474
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=61.86 E-value=74 Score=39.32 Aligned_cols=73 Identities=27% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+...+++++-.+-=.--++...+=.++++..++....++.+...|..+++.+.++.++|+.+|..|..+|.++
T Consensus 1431 ~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1431 AALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=61.82 E-value=50 Score=27.33 Aligned_cols=48 Identities=31% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLS-------------NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le-------------~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.++...|..+++.|+ .||-.|+.++.+|+.-+ ...|...|-+++..|+
T Consensus 23 ~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~ 83 (86)
T PF12711_consen 23 EEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELR 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHH
No 476
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=61.59 E-value=72 Score=37.30 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 256 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 256 DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
.+++....+.....-+.|+.......+.+..|+.+...++.+......++..++.+...|+.+...|...|
T Consensus 464 ~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 464 TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 477
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=61.44 E-value=2.7 Score=40.40 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 338 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L 338 (353)
.+...+++.....+..|+.-|+.|-.+++.|+.||.+|+++-..|........|
T Consensus 118 KDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL~k~~~eke~ 171 (243)
T PF08961_consen 118 KDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARLLKGPVEKEL 171 (243)
T ss_dssp ------------------------------------------------------
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhh
No 478
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.41 E-value=90 Score=34.75 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
++..+-....++-=...++.+.+..+++.+|+.+++.|+..-..|.++++.+.+..+.|....+.|...+..
T Consensus 554 ~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 554 EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 479
>PRK14150 heat shock protein GrpE; Provisional
Probab=61.35 E-value=25 Score=32.80 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
....+++|+.++..|+. .|+.++-++..+++-++....+=++++........+.+|....++
T Consensus 39 ~~~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~Dn 100 (193)
T PRK14150 39 ADARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDN 100 (193)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
No 480
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=61.19 E-value=61 Score=26.29 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRLCGP 332 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~----~EN~~LkeeL~~L~g~ 332 (353)
+...++++.++..--.|.+.++..|-.|.....+++ .|...|+.+|...-+.
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~~~ 79 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRGRQ 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHTT-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
No 481
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=60.96 E-value=30 Score=36.26 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNENRN---------LRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~---------L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++++++|+.+++.++..... ++.+++.|.++...|+.....|...|..|.
T Consensus 169 ~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 169 QERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.95 E-value=37 Score=34.78 Aligned_cols=58 Identities=28% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
Q 018605 274 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 274 RRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~---e~~~L~~EN~~LkeeL~~L~g 331 (353)
+|-+.=|.+-..-|+.++..+...|+-|++-.+.+++ +.++|+.+|+.|+.+|-..++
T Consensus 60 ~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 60 RREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 483
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=60.82 E-value=17 Score=33.94 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 339 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~ 339 (353)
.++..|..+|..|..+++.|++.|..+.+|...|..-|..-+-++.|..|.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~ 129 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELK 129 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
No 484
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=60.75 E-value=1.3e+02 Score=31.68 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 018605 255 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 334 (353)
Q Consensus 255 ~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~ 334 (353)
.+++ +++.-|.+.|...+.--+.-+.- .+.|.+++..+..=-.+|..+++.|..|+..|..+-.+|...|..+..|..
T Consensus 45 ~s~~-ir~~sr~l~~e~~~~t~~~q~dt-t~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ 122 (421)
T KOG2685|consen 45 QSER-IRRESRLLVNETNALTDKMQRDT-TEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPLS 122 (421)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Q ss_pred hhh
Q 018605 335 VAN 337 (353)
Q Consensus 335 i~~ 337 (353)
|..
T Consensus 123 ia~ 125 (421)
T KOG2685|consen 123 IAE 125 (421)
T ss_pred HHH
No 485
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=60.75 E-value=2.8 Score=35.69 Aligned_cols=44 Identities=39% Similarity=0.490 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 334 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~ 334 (353)
+..|+.+...|.+++..|..++..|+.|...|++++..|.....
T Consensus 1 ~~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~ 44 (118)
T PF08286_consen 1 IQELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEV 44 (118)
T ss_dssp ------------------------------------------HT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 486
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=60.66 E-value=40 Score=30.27 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 279 RKQAECEELQARVETLSNEN------------RNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN------------~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.-.+..+|..++.+|+.|+ ..|+++++.|.+|++++..+...-+..+...
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~ 99 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKS 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=60.63 E-value=61 Score=36.05 Aligned_cols=70 Identities=26% Similarity=0.269 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q 018605 268 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 337 (353)
Q Consensus 268 ~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~ 337 (353)
++..=+.++..-=|.+++..+.+++.++.....+..++..++.....|+.|+.+|+.+|..+...+...+
T Consensus 559 k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s 628 (698)
T KOG0978|consen 559 KKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGAS 628 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
No 488
>PF14645 Chibby: Chibby family
Probab=60.46 E-value=21 Score=30.76 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 294 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
...++..|+++++.|++|+..|+-++..|...|..
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLte 103 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDMLTE 103 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=60.28 E-value=52 Score=32.58 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 267 QSNRESARRSRLRKQAECEELQA----RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 267 ~~NRESARRSR~RKq~~leeLE~----rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+-|...-|-|+|.++....-.. ++.+|+.....|..++..|..+...|+....+|++++..
T Consensus 201 ~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 201 DQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVME 266 (279)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=60.28 E-value=33 Score=35.91 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhcCCch
Q 018605 265 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQR----------LSEECEKLTSENNSIKEDLSRLCGPEA 334 (353)
Q Consensus 265 Rk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~----------L~~e~~~L~~EN~~LkeeL~~L~g~~~ 334 (353)
|+ ++|+=|..|-+-+-..+-+++.+|..|+.+...|++-|.+ |++.+...+.++..|.++...|.....
T Consensus 397 rk-kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq~ 475 (486)
T KOG2185|consen 397 RK-KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQV 475 (486)
T ss_pred hh-hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q ss_pred hhhhhhcCC
Q 018605 335 VANLEQSNP 343 (353)
Q Consensus 335 i~~L~~~~~ 343 (353)
-++-+..++
T Consensus 476 sr~s~kKm~ 484 (486)
T KOG2185|consen 476 SRESEKKML 484 (486)
T ss_pred hhhhhhhhc
No 491
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=60.23 E-value=37 Score=32.32 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCC
Q 018605 282 AECEELQARVETLSNENRNLRDELQRL--SEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 343 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L--~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~ 343 (353)
+++-+++.|++.|+.+-..|++-++.- -+++..++.|+.+++.+|+.+. ..+..|.....
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~--~~~~~l~~~v~ 193 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLE--GQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhc
No 492
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=60.19 E-value=43 Score=32.99 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++-+..+..+++.++.....|......|..++++.+.|..+.+.+|..|+
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=60.16 E-value=33 Score=37.81 Aligned_cols=49 Identities=33% Similarity=0.515 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|++++..|..+++.|+.... .|++.|+.+.+.|+.|.+-|.-++..+
T Consensus 11 ~ek~~E~~~l~~~~~~lk~~~~---~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 11 QEKQKERQALKSSVEELKESHE---EELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=60.14 E-value=74 Score=33.45 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 018605 256 DERELKRQKRKQSNRESARRSRLRKQ------------AECEELQARVETLSNENRNLRD-------ELQRLSEECEKLT 316 (353)
Q Consensus 256 DEre~KR~RRk~~NRESARRSR~RKq------------~~leeLE~rv~~Le~EN~~L~~-------el~~L~~e~~~L~ 316 (353)
.++-.+-+.|...-|.+-..+|.|.+ .-+..|+.++..++.+...|+. ++..|+.++..|+
T Consensus 248 e~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe 327 (434)
T PRK15178 248 ENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLE 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCCchhhhh
Q 018605 317 SENNSIKEDLSRLCGPEAVANL 338 (353)
Q Consensus 317 ~EN~~LkeeL~~L~g~~~i~~L 338 (353)
.+...++.+|..-.|...+..+
T Consensus 328 ~QIa~er~kl~~~~g~~~la~~ 349 (434)
T PRK15178 328 KQIGEQRNRLSNKLGSQGSSES 349 (434)
T ss_pred HHHHHHHHHhhcCCCCCchhHH
No 495
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=60.08 E-value=44 Score=27.76 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
++.-++.|+.....|..++..|.+++..+..+...|+..|..+..
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~ 129 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ 129 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 496
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=60.03 E-value=87 Score=36.97 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 254 IQDERELKRQKRKQSNRES---ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 254 ~~DEre~KR~RRk~~NRES---ARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+++..++++.++..-+|+= ++..-....+.+.+++.+...|++++..|+.+++.+++....+..++..+-....+|
T Consensus 470 L~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~l 548 (1317)
T KOG0612|consen 470 LEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQL 548 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 497
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.87 E-value=98 Score=29.30 Aligned_cols=72 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
++-.++..++..-=|.+.+.|....++.++|..++..|+.+...|+.++..+++---+.......++.....
T Consensus 91 ~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~e 162 (203)
T KOG3433|consen 91 ATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAE 162 (203)
T ss_pred HHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
No 498
>PRK14127 cell division protein GpsB; Provisional
Probab=59.82 E-value=44 Score=28.76 Aligned_cols=49 Identities=12% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
.++...=++.+-.+...|..++..|++++..|+.++..++.++......
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
No 499
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=59.73 E-value=30 Score=31.79 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
|.+.+.|+.|...+..+|..|++-+...+.....||.+|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 500
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=59.71 E-value=23 Score=30.08 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 319 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 319 (353)
.+.+++.++..|+.++.+|+.|++.|++...-.+..+
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~ 108 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Done!