Query 018605
Match_columns 353
No_of_seqs 256 out of 1161
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:13:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 3.3E-14 1.1E-18 105.6 6.3 53 261-313 1-53 (55)
2 2wt7_A Proto-oncogene protein 99.4 1.1E-12 3.9E-17 99.5 10.4 58 261-318 2-59 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.4 1.3E-12 4.4E-17 98.4 9.3 57 261-317 1-57 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.4 1.3E-12 4.3E-17 98.8 6.9 57 261-317 1-57 (62)
5 2dgc_A Protein (GCN4); basic d 99.3 3.2E-12 1.1E-16 97.4 6.8 52 262-313 10-61 (63)
6 1gd2_E Transcription factor PA 99.2 2.6E-11 8.8E-16 94.3 8.4 61 263-323 10-70 (70)
7 1ci6_A Transcription factor AT 99.2 2.7E-11 9.2E-16 92.1 7.4 57 260-316 1-57 (63)
8 1hjb_A Ccaat/enhancer binding 99.0 1.7E-09 5.8E-14 87.3 8.5 61 261-321 15-75 (87)
9 1gu4_A CAAT/enhancer binding p 98.9 4.7E-09 1.6E-13 83.1 8.3 55 262-316 16-70 (78)
10 3a5t_A Transcription factor MA 98.8 1.2E-10 4.1E-15 97.3 -3.6 58 254-311 30-87 (107)
11 2wt7_B Transcription factor MA 98.6 4.4E-07 1.5E-11 73.6 10.3 68 256-330 22-89 (90)
12 2oqq_A Transcription factor HY 97.2 0.00062 2.1E-08 47.7 5.6 36 281-316 2-37 (42)
13 1skn_P DNA-binding domain of S 96.9 0.00047 1.6E-08 55.7 2.7 32 258-289 59-90 (92)
14 1deb_A APC protein, adenomatou 96.7 0.0055 1.9E-07 44.6 7.0 48 284-331 5-52 (54)
15 2jee_A YIIU; FTSZ, septum, coi 96.4 0.012 4.2E-07 46.7 7.9 53 284-338 22-74 (81)
16 3s9g_A Protein hexim1; cyclin 96.1 0.019 6.7E-07 47.1 7.6 48 282-329 37-91 (104)
17 2jee_A YIIU; FTSZ, septum, coi 95.9 0.028 9.5E-07 44.7 7.7 52 280-331 25-76 (81)
18 1go4_E MAD1 (mitotic arrest de 95.9 0.022 7.6E-07 46.9 7.1 24 308-331 73-96 (100)
19 3hnw_A Uncharacterized protein 95.8 0.038 1.3E-06 47.6 8.9 52 279-330 72-123 (138)
20 2w6a_A ARF GTPase-activating p 95.7 0.041 1.4E-06 41.4 7.4 40 285-324 23-62 (63)
21 2c9l_Y EB1, zebra, BZLF1 trans 95.5 0.066 2.3E-06 39.7 7.8 56 264-340 4-59 (63)
22 3he5_A Synzip1; heterodimeric 95.5 0.053 1.8E-06 38.1 6.8 45 283-327 4-48 (49)
23 3a7p_A Autophagy protein 16; c 95.1 0.35 1.2E-05 42.4 12.4 73 258-330 65-137 (152)
24 3m48_A General control protein 94.9 0.027 9.1E-07 37.6 3.7 28 283-310 1-28 (33)
25 2wt7_B Transcription factor MA 94.8 0.26 8.8E-06 39.8 10.0 55 273-330 28-82 (90)
26 2oxj_A Hybrid alpha/beta pepti 94.8 0.035 1.2E-06 37.2 4.1 29 283-311 2-30 (34)
27 1ci6_A Transcription factor AT 94.8 0.081 2.8E-06 39.7 6.7 41 288-328 22-62 (63)
28 3oja_B Anopheles plasmodium-re 94.7 0.3 1E-05 49.2 12.8 44 286-329 534-577 (597)
29 3vmx_A Voltage-gated hydrogen 94.7 0.12 4.2E-06 37.2 7.0 41 288-328 3-43 (48)
30 3a2a_A Voltage-gated hydrogen 94.5 0.088 3E-06 39.0 6.1 41 288-328 10-50 (58)
31 3hnw_A Uncharacterized protein 94.5 0.22 7.6E-06 42.8 9.7 50 281-330 81-130 (138)
32 1kd8_B GABH BLL, GCN4 acid bas 94.4 0.065 2.2E-06 36.3 4.8 31 283-313 2-32 (36)
33 1uii_A Geminin; human, DNA rep 94.3 0.21 7.2E-06 39.8 8.3 35 295-329 45-79 (83)
34 3m91_A Proteasome-associated A 94.3 0.17 6E-06 36.8 7.2 38 284-321 11-48 (51)
35 3cvf_A Homer-3, homer protein 94.2 0.084 2.9E-06 41.7 5.7 48 283-330 7-54 (79)
36 1t2k_D Cyclic-AMP-dependent tr 94.1 0.29 1E-05 36.1 8.4 37 290-326 23-59 (61)
37 2v66_B Nuclear distribution pr 94.1 0.1 3.5E-06 43.6 6.4 46 284-329 37-82 (111)
38 3oja_B Anopheles plasmodium-re 94.1 0.23 7.9E-06 50.0 10.3 12 333-344 572-583 (597)
39 1kd8_A GABH AIV, GCN4 acid bas 94.0 0.074 2.5E-06 36.0 4.3 31 283-313 2-32 (36)
40 3c3f_A Alpha/beta peptide with 93.9 0.073 2.5E-06 35.6 4.1 29 283-311 2-30 (34)
41 3efg_A Protein SLYX homolog; x 93.9 0.15 5.2E-06 39.9 6.6 50 282-331 14-63 (78)
42 2wt7_A Proto-oncogene protein 93.9 0.55 1.9E-05 35.0 9.5 36 291-326 25-60 (63)
43 3m9b_A Proteasome-associated A 93.7 0.053 1.8E-06 51.2 4.5 54 283-343 55-109 (251)
44 3m91_A Proteasome-associated A 93.7 0.25 8.5E-06 36.0 7.1 43 288-330 8-50 (51)
45 3mq7_A Bone marrow stromal ant 93.5 0.35 1.2E-05 40.8 8.6 40 289-328 71-110 (121)
46 3cve_A Homer protein homolog 1 93.5 0.22 7.5E-06 38.7 6.9 46 285-330 3-48 (72)
47 2oqq_A Transcription factor HY 93.5 0.25 8.6E-06 34.6 6.4 36 291-326 5-40 (42)
48 3c3g_A Alpha/beta peptide with 93.4 0.098 3.3E-06 34.8 4.1 28 284-311 2-29 (33)
49 2zxx_A Geminin; coiled-coil, c 93.4 0.2 6.8E-06 39.6 6.6 35 296-330 34-68 (79)
50 2bni_A General control protein 93.1 0.11 3.7E-06 34.8 3.9 28 283-310 2-29 (34)
51 2v71_A Nuclear distribution pr 93.1 0.21 7.1E-06 45.3 7.1 12 333-344 109-120 (189)
52 1uo4_A General control protein 93.1 0.11 3.7E-06 34.8 3.9 28 283-310 2-29 (34)
53 1hjb_A Ccaat/enhancer binding 93.0 0.69 2.4E-05 37.0 9.3 36 281-316 42-77 (87)
54 2kz5_A Transcription factor NF 93.0 0.0075 2.6E-07 48.7 -2.1 25 258-282 63-87 (91)
55 1nkp_B MAX protein, MYC proto- 93.0 0.39 1.3E-05 37.2 7.7 35 297-331 48-82 (83)
56 2hy6_A General control protein 92.8 0.13 4.3E-06 34.5 3.9 29 283-311 2-30 (34)
57 1gu4_A CAAT/enhancer binding p 92.7 0.94 3.2E-05 35.5 9.5 28 282-309 43-70 (78)
58 2yy0_A C-MYC-binding protein; 92.6 0.21 7.3E-06 36.4 5.3 31 290-327 20-50 (53)
59 2wvr_A Geminin; DNA replicatio 92.6 0.32 1.1E-05 44.6 7.6 27 297-323 116-142 (209)
60 2yy0_A C-MYC-binding protein; 92.6 0.18 6.1E-06 36.8 4.9 25 285-309 22-46 (53)
61 1t6f_A Geminin; coiled-coil, c 92.6 0.18 6.2E-06 34.2 4.5 30 295-324 6-35 (37)
62 2wq1_A General control protein 92.5 0.16 5.5E-06 33.8 4.1 27 284-310 2-28 (33)
63 1gd2_E Transcription factor PA 92.3 0.58 2E-05 36.0 7.7 29 285-313 39-67 (70)
64 2dfs_A Myosin-5A; myosin-V, in 92.2 0.8 2.7E-05 50.9 11.8 17 314-330 1027-1043(1080)
65 4h22_A Leucine-rich repeat fli 92.2 0.59 2E-05 38.6 8.0 47 282-328 37-83 (103)
66 1fmh_A General control protein 91.7 0.22 7.6E-06 32.4 3.9 30 283-312 2-31 (33)
67 3m9b_A Proteasome-associated A 91.3 0.21 7E-06 47.2 5.0 37 280-316 59-95 (251)
68 2xdj_A Uncharacterized protein 91.2 1.8 6.2E-05 34.2 9.7 55 284-338 22-76 (83)
69 2dgc_A Protein (GCN4); basic d 91.0 0.94 3.2E-05 33.9 7.5 33 294-326 28-60 (63)
70 1nkp_A C-MYC, MYC proto-oncoge 91.0 1.1 3.8E-05 35.4 8.4 35 297-331 53-87 (88)
71 3u06_A Protein claret segregat 91.0 0.68 2.3E-05 46.2 8.7 51 281-331 9-59 (412)
72 4etp_A Kinesin-like protein KA 90.9 0.71 2.4E-05 45.7 8.8 53 280-332 8-60 (403)
73 3nmd_A CGMP dependent protein 90.7 1.1 3.7E-05 34.8 7.7 23 283-305 41-63 (72)
74 1jnm_A Proto-oncogene C-JUN; B 90.6 1.9 6.7E-05 31.7 8.9 33 297-329 23-55 (62)
75 2v4h_A NF-kappa-B essential mo 90.4 2.7 9.2E-05 35.0 10.3 56 268-323 31-89 (110)
76 1wt6_A Myotonin-protein kinase 90.3 3.2 0.00011 32.8 10.2 61 269-332 14-74 (81)
77 3i00_A HIP-I, huntingtin-inter 90.2 2.5 8.6E-05 35.5 10.2 47 276-322 34-80 (120)
78 3htk_A Structural maintenance 89.7 2.3 7.9E-05 30.7 8.5 48 280-327 10-57 (60)
79 3o0z_A RHO-associated protein 89.6 4.4 0.00015 36.1 11.8 59 265-330 73-131 (168)
80 2dfs_A Myosin-5A; myosin-V, in 89.6 1.1 3.6E-05 49.9 9.5 37 287-323 982-1018(1080)
81 3q8t_A Beclin-1; autophagy, AT 89.5 1.6 5.5E-05 35.2 8.2 26 283-308 26-51 (96)
82 1a93_B MAX protein, coiled coi 89.3 0.62 2.1E-05 31.3 4.6 29 301-329 5-33 (34)
83 2w83_C C-JUN-amino-terminal ki 89.2 0.62 2.1E-05 36.5 5.3 41 286-326 34-74 (77)
84 3efg_A Protein SLYX homolog; x 89.1 1.2 4.2E-05 34.7 7.0 55 285-341 10-64 (78)
85 1gmj_A ATPase inhibitor; coile 88.9 3.4 0.00012 32.9 9.5 24 306-329 54-77 (84)
86 2r2v_A GCN4 leucine zipper; co 88.8 0.55 1.9E-05 31.4 4.1 28 283-310 2-29 (34)
87 1wlq_A Geminin; coiled-coil; 2 88.6 1.9 6.5E-05 34.3 7.8 33 296-328 38-70 (83)
88 1nkp_B MAX protein, MYC proto- 88.2 0.58 2E-05 36.3 4.6 27 283-309 48-74 (83)
89 3iv1_A Tumor susceptibility ge 88.2 6.2 0.00021 31.0 10.4 53 278-330 21-73 (78)
90 2eqb_B RAB guanine nucleotide 87.9 2.6 8.8E-05 34.4 8.4 23 307-329 73-95 (97)
91 2j5u_A MREC protein; bacterial 87.8 0.24 8.1E-06 46.3 2.5 36 294-329 24-62 (255)
92 4emc_A Monopolin complex subun 87.8 0.9 3.1E-05 41.2 6.1 39 288-326 19-57 (190)
93 1am9_A Srebp-1A, protein (ster 87.6 6 0.0002 30.6 10.1 66 264-329 5-76 (82)
94 1ic2_A Tropomyosin alpha chain 87.6 2.9 9.9E-05 32.3 8.3 44 283-326 28-71 (81)
95 3mq7_A Bone marrow stromal ant 87.4 3 0.0001 35.2 8.6 35 295-329 70-104 (121)
96 1nlw_A MAD protein, MAX dimeri 87.4 1 3.6E-05 35.1 5.6 30 299-328 50-79 (80)
97 3jsv_C NF-kappa-B essential mo 87.1 4.8 0.00016 32.7 9.4 74 267-342 8-84 (94)
98 3nmd_A CGMP dependent protein 87.0 1.1 3.7E-05 34.8 5.3 32 299-330 36-67 (72)
99 3ghg_A Fibrinogen alpha chain; 86.9 1.3 4.4E-05 45.7 7.4 37 286-322 114-150 (562)
100 2xdj_A Uncharacterized protein 86.8 3.5 0.00012 32.6 8.4 41 278-318 23-63 (83)
101 2lw1_A ABC transporter ATP-bin 86.8 2 6.7E-05 33.8 7.0 49 281-329 21-75 (89)
102 3s9g_A Protein hexim1; cyclin 86.7 3.7 0.00013 33.7 8.6 27 282-308 65-91 (104)
103 3he5_B Synzip2; heterodimeric 86.7 2.9 9.7E-05 29.7 6.9 34 291-324 12-45 (52)
104 3a7o_A Autophagy protein 16; c 86.4 2.8 9.6E-05 32.5 7.3 47 284-330 27-73 (75)
105 1ic2_A Tropomyosin alpha chain 86.4 9.7 0.00033 29.3 11.5 53 278-330 16-68 (81)
106 4ani_A Protein GRPE; chaperone 86.0 1.2 4.1E-05 40.9 6.1 58 285-342 62-119 (213)
107 4h22_A Leucine-rich repeat fli 85.9 3.2 0.00011 34.2 8.0 49 283-331 31-79 (103)
108 1jcd_A Major outer membrane li 85.9 4.3 0.00015 29.5 7.8 45 283-327 5-49 (52)
109 1dh3_A Transcription factor CR 85.7 2.9 0.0001 30.4 6.9 27 304-330 23-49 (55)
110 4b4t_K 26S protease regulatory 85.7 1.3 4.5E-05 44.2 6.7 47 285-331 45-91 (428)
111 3o0z_A RHO-associated protein 85.5 5 0.00017 35.7 9.6 52 275-328 29-80 (168)
112 1wt6_A Myotonin-protein kinase 85.3 5.6 0.00019 31.5 8.7 52 267-318 23-74 (81)
113 3trt_A Vimentin; cytoskeleton, 85.1 10 0.00035 28.5 11.0 59 262-323 18-76 (77)
114 3htk_A Structural maintenance 85.0 5.6 0.00019 28.6 8.2 47 284-330 7-53 (60)
115 3ghg_A Fibrinogen alpha chain; 84.7 2.5 8.5E-05 43.7 8.2 41 300-342 114-154 (562)
116 3cve_A Homer protein homolog 1 84.7 4 0.00014 31.6 7.6 48 282-329 21-68 (72)
117 3q8t_A Beclin-1; autophagy, AT 84.5 14 0.00048 29.6 12.4 69 262-330 26-94 (96)
118 1nkp_A C-MYC, MYC proto-oncoge 84.2 2 6.8E-05 34.0 5.9 30 293-322 56-85 (88)
119 3u1c_A Tropomyosin alpha-1 cha 84.2 15 0.00051 29.5 12.5 46 279-324 27-72 (101)
120 3s4r_A Vimentin; alpha-helix, 84.1 12 0.00042 29.8 10.5 30 297-326 57-86 (93)
121 3swy_A Cyclic nucleotide-gated 83.9 4.4 0.00015 28.8 6.9 42 286-330 2-43 (46)
122 3na7_A HP0958; flagellar bioge 83.8 11 0.00039 34.5 11.7 15 287-301 95-109 (256)
123 4dzn_A Coiled-coil peptide CC- 83.8 2.3 7.8E-05 27.7 4.8 24 300-323 6-29 (33)
124 3a7p_A Autophagy protein 16; c 83.7 8.4 0.00029 33.7 10.1 35 283-317 97-131 (152)
125 3mq9_A Bone marrow stromal ant 83.7 8.6 0.00029 37.6 11.5 26 304-329 444-469 (471)
126 3cvf_A Homer-3, homer protein 83.7 4.5 0.00015 31.8 7.6 47 283-329 28-74 (79)
127 1dip_A Delta-sleep-inducing pe 83.7 0.65 2.2E-05 36.3 2.7 42 297-342 16-57 (78)
128 3na7_A HP0958; flagellar bioge 83.1 11 0.00037 34.7 11.2 40 283-322 33-72 (256)
129 2xv5_A Lamin-A/C; structural p 83.0 6.8 0.00023 30.2 8.3 43 285-327 8-50 (74)
130 3oja_A Leucine-rich immune mol 82.8 13 0.00045 36.4 12.5 27 296-322 435-461 (487)
131 1gmj_A ATPase inhibitor; coile 82.8 8.9 0.0003 30.5 9.0 25 298-322 53-77 (84)
132 4etp_A Kinesin-like protein KA 82.4 2.2 7.6E-05 42.2 6.7 50 280-329 15-64 (403)
133 2ve7_C Kinetochore protein NUF 82.3 1.8 6.2E-05 40.3 5.7 58 261-318 120-184 (250)
134 2fxo_A Myosin heavy chain, car 82.1 14 0.00047 30.8 10.6 45 285-329 65-109 (129)
135 2wuj_A Septum site-determining 81.9 1.3 4.5E-05 32.4 3.7 28 283-310 28-55 (57)
136 1nlw_A MAD protein, MAX dimeri 81.8 3.2 0.00011 32.3 6.1 35 281-315 46-80 (80)
137 1g6u_A Domain swapped dimer; d 81.7 6 0.0002 27.6 6.7 27 304-330 21-47 (48)
138 1lwu_C Fibrinogen gamma chain; 81.7 3 0.0001 40.5 7.2 48 282-329 12-59 (323)
139 1joc_A EEA1, early endosomal a 81.6 9.6 0.00033 31.7 9.4 48 282-329 11-58 (125)
140 3oja_A Leucine-rich immune mol 81.5 13 0.00045 36.4 11.9 28 282-309 435-462 (487)
141 4ati_A MITF, microphthalmia-as 81.3 4.4 0.00015 33.6 7.2 70 261-330 23-111 (118)
142 1gk6_A Vimentin; intermediate 81.2 4.2 0.00014 29.8 6.2 45 285-329 3-47 (59)
143 3u59_A Tropomyosin beta chain; 81.1 19 0.00066 28.7 12.2 37 284-320 32-68 (101)
144 3i00_A HIP-I, huntingtin-inter 80.9 10 0.00036 31.7 9.3 46 285-330 36-81 (120)
145 2v4h_A NF-kappa-B essential mo 80.6 21 0.0007 29.7 10.8 46 283-328 63-108 (110)
146 3bas_A Myosin heavy chain, str 80.4 19 0.00066 28.2 12.2 52 279-330 32-83 (89)
147 2ve7_C Kinetochore protein NUF 80.4 0.74 2.5E-05 43.0 2.3 35 293-327 145-179 (250)
148 1am9_A Srebp-1A, protein (ster 80.2 2.5 8.6E-05 32.8 5.0 28 281-308 49-76 (82)
149 3swf_A CGMP-gated cation chann 80.2 4.2 0.00015 31.6 6.1 43 285-330 3-45 (74)
150 3ra3_A P1C; coiled coil domain 80.0 1.2 4E-05 28.1 2.3 25 292-316 3-27 (28)
151 3s4r_A Vimentin; alpha-helix, 79.9 9 0.00031 30.5 8.3 31 282-312 56-86 (93)
152 2fxo_A Myosin heavy chain, car 79.9 16 0.00056 30.3 10.3 44 286-329 80-123 (129)
153 1wle_A Seryl-tRNA synthetase; 79.6 13 0.00046 37.8 11.5 29 300-328 120-148 (501)
154 1x8y_A Lamin A/C; structural p 79.6 20 0.00069 28.0 10.2 50 280-329 26-75 (86)
155 1go4_E MAD1 (mitotic arrest de 79.5 2.6 9E-05 34.5 5.0 30 283-312 13-42 (100)
156 2dq0_A Seryl-tRNA synthetase; 79.1 8.8 0.0003 38.5 9.9 28 301-328 74-101 (455)
157 2xv5_A Lamin-A/C; structural p 78.9 11 0.00039 28.9 8.3 53 275-327 5-57 (74)
158 3trt_A Vimentin; cytoskeleton, 78.8 15 0.00052 27.6 9.0 44 288-331 34-77 (77)
159 3ra3_B P2F; coiled coil domain 78.8 1.6 5.6E-05 27.4 2.8 19 294-312 5-23 (28)
160 1jcd_A Major outer membrane li 78.8 7.9 0.00027 28.1 6.9 40 289-328 4-43 (52)
161 3m48_A General control protein 78.7 1.9 6.5E-05 28.7 3.2 23 307-329 4-26 (33)
162 1p9i_A Cortexillin I/GCN4 hybr 78.5 2.9 9.9E-05 26.8 3.9 23 286-308 3-25 (31)
163 1fmh_B General control protein 78.4 3.7 0.00013 26.7 4.4 29 284-312 3-31 (33)
164 1wlq_A Geminin; coiled-coil; 2 78.3 12 0.00042 29.6 8.4 43 284-330 40-82 (83)
165 1a93_B MAX protein, coiled coi 78.2 3.2 0.00011 27.8 4.2 24 297-320 8-31 (34)
166 2xzr_A Immunoglobulin-binding 78.2 27 0.00092 28.6 10.9 66 264-329 34-102 (114)
167 3qne_A Seryl-tRNA synthetase, 77.9 11 0.00037 38.5 10.1 52 277-328 42-103 (485)
168 3qh9_A Liprin-beta-2; coiled-c 77.7 12 0.00041 29.5 8.1 39 281-319 25-63 (81)
169 3he5_B Synzip2; heterodimeric 77.7 7.7 0.00026 27.4 6.3 33 287-319 15-47 (52)
170 3iv1_A Tumor susceptibility ge 77.1 18 0.00062 28.3 9.0 54 277-330 13-66 (78)
171 4e61_A Protein BIM1; EB1-like 76.6 10 0.00035 31.4 7.8 29 283-311 12-40 (106)
172 3lay_A Zinc resistance-associa 76.5 18 0.00061 32.1 10.0 19 304-322 114-132 (175)
173 1ses_A Seryl-tRNA synthetase; 76.1 27 0.00094 34.5 12.4 31 299-329 67-97 (421)
174 2oxj_A Hybrid alpha/beta pepti 76.1 5.4 0.00019 26.6 4.8 26 301-326 6-31 (34)
175 4dzn_A Coiled-coil peptide CC- 76.0 6.9 0.00024 25.4 5.2 23 286-308 6-28 (33)
176 3a2a_A Voltage-gated hydrogen 75.9 7.8 0.00027 28.6 6.1 34 275-310 13-46 (58)
177 1wle_A Seryl-tRNA synthetase; 75.9 22 0.00076 36.2 11.8 65 278-344 80-155 (501)
178 1gk4_A Vimentin; intermediate 75.6 26 0.00089 27.1 11.3 54 276-329 20-73 (84)
179 2ve7_A Kinetochore protein HEC 75.1 3.8 0.00013 39.2 5.7 30 289-318 185-214 (315)
180 2wvr_A Geminin; DNA replicatio 75.0 8.7 0.0003 35.2 7.6 59 282-344 115-175 (209)
181 3mq9_A Bone marrow stromal ant 75.0 33 0.0011 33.3 12.5 30 301-330 434-463 (471)
182 1hlo_A Protein (transcription 74.9 6.6 0.00022 30.1 6.0 25 270-294 17-41 (80)
183 1dip_A Delta-sleep-inducing pe 74.7 1.8 6.3E-05 33.8 2.7 25 284-308 17-41 (78)
184 2oa5_A Hypothetical protein BQ 74.6 1.6 5.6E-05 36.3 2.5 26 282-307 8-33 (110)
185 3vkg_A Dynein heavy chain, cyt 74.5 12 0.00041 46.3 10.8 31 297-327 2036-2066(3245)
186 3w03_C DNA repair protein XRCC 74.3 5.9 0.0002 35.7 6.3 35 282-316 145-179 (184)
187 2w83_C C-JUN-amino-terminal ki 74.2 4.2 0.00014 31.9 4.6 44 287-330 7-57 (77)
188 3u06_A Protein claret segregat 74.0 6 0.0002 39.3 6.9 47 282-328 17-63 (412)
189 3ol1_A Vimentin; structural ge 73.9 36 0.0012 28.0 12.3 37 293-329 66-102 (119)
190 2lz1_A Nuclear factor erythroi 73.8 0.061 2.1E-06 43.4 -6.0 24 258-281 63-86 (90)
191 3ol1_A Vimentin; structural ge 73.5 15 0.00053 30.3 8.3 58 282-341 48-105 (119)
192 3bbp_D GRIP and coiled-coil do 73.4 2.6 8.9E-05 32.5 3.2 45 286-330 19-63 (71)
193 3oa7_A Head morphogenesis prot 72.7 12 0.00041 34.1 7.9 44 291-334 32-75 (206)
194 4b4t_K 26S protease regulatory 72.3 6.4 0.00022 39.2 6.7 43 282-324 49-91 (428)
195 3mov_A Lamin-B1; LMNB1, B-type 72.0 31 0.0011 27.6 9.5 49 281-329 36-84 (95)
196 1lwu_C Fibrinogen gamma chain; 72.0 8.7 0.0003 37.2 7.4 27 283-309 27-53 (323)
197 3qh9_A Liprin-beta-2; coiled-c 72.0 19 0.00066 28.4 7.9 20 303-322 54-73 (81)
198 2eqb_B RAB guanine nucleotide 72.0 38 0.0013 27.5 12.2 45 285-329 15-59 (97)
199 1fzc_C Fibrin; blood coagulati 71.9 1.9 6.5E-05 41.8 2.7 48 282-329 4-51 (319)
200 4emc_A Monopolin complex subun 71.6 13 0.00043 33.7 7.7 26 287-312 32-57 (190)
201 1kd8_B GABH BLL, GCN4 acid bas 71.5 9.3 0.00032 25.8 5.1 28 300-327 5-32 (36)
202 1p9i_A Cortexillin I/GCN4 hybr 71.4 3.9 0.00013 26.3 3.1 22 308-329 4-25 (31)
203 2oto_A M protein; helical coil 71.3 17 0.00057 31.1 8.3 32 284-315 52-83 (155)
204 1uix_A RHO-associated kinase; 71.1 16 0.00055 28.1 7.2 31 287-317 2-32 (71)
205 3a5t_A Transcription factor MA 71.0 0.81 2.8E-05 38.0 -0.1 38 292-329 61-98 (107)
206 3tnu_A Keratin, type I cytoske 70.9 44 0.0015 27.7 11.4 48 282-329 77-124 (131)
207 2ocy_A RAB guanine nucleotide 70.5 36 0.0012 29.7 10.3 22 309-330 107-128 (154)
208 1zxa_A CGMP-dependent protein 70.2 6.5 0.00022 30.0 4.8 34 278-311 21-54 (67)
209 1s1c_X RHO-associated, coiled- 69.9 19 0.00065 27.7 7.4 32 286-317 3-34 (71)
210 3hhm_B NISH2 P85alpha; PI3KCA, 69.9 15 0.00052 36.0 8.7 54 278-331 201-254 (373)
211 2zqm_A Prefoldin beta subunit 69.9 16 0.00054 29.0 7.4 39 293-331 74-112 (117)
212 3w03_C DNA repair protein XRCC 69.8 12 0.00043 33.5 7.3 28 284-311 154-181 (184)
213 1gk7_A Vimentin; intermediate 69.7 8.7 0.0003 26.2 4.9 26 303-328 13-38 (39)
214 1deq_A Fibrinogen (alpha chain 69.7 11 0.00036 37.6 7.4 45 282-326 113-157 (390)
215 1m1j_A Fibrinogen alpha subuni 69.4 47 0.0016 33.9 12.1 45 282-326 111-155 (491)
216 3tnu_B Keratin, type II cytosk 69.2 47 0.0016 27.4 11.4 46 284-329 77-122 (129)
217 3lss_A Seryl-tRNA synthetase; 69.0 30 0.001 35.2 10.9 24 305-328 113-136 (484)
218 2fic_A Bridging integrator 1; 68.7 19 0.00067 32.2 8.6 25 302-329 185-209 (251)
219 1zme_C Proline utilization tra 68.7 4.3 0.00015 29.4 3.4 25 281-305 43-67 (70)
220 3mud_A DNA repair protein XRCC 68.5 17 0.00057 32.5 7.8 36 285-320 131-166 (175)
221 1gk6_A Vimentin; intermediate 68.5 31 0.0011 25.1 8.1 47 281-327 6-52 (59)
222 1fxk_C Protein (prefoldin); ar 68.3 21 0.00073 29.2 8.1 31 285-315 98-128 (133)
223 3c3g_A Alpha/beta peptide with 67.6 11 0.00039 24.9 4.8 26 301-326 5-30 (33)
224 3uux_B Mitochondrial division 67.2 20 0.0007 33.5 8.4 51 281-331 176-226 (242)
225 1kd8_A GABH AIV, GCN4 acid bas 66.0 14 0.00049 24.9 5.1 27 301-327 6-32 (36)
226 2xus_A Breast cancer metastasi 65.8 19 0.00064 25.9 6.1 39 278-322 6-44 (49)
227 3qne_A Seryl-tRNA synthetase, 65.8 32 0.0011 35.0 10.3 18 288-305 46-63 (485)
228 4b4t_M 26S protease regulatory 65.7 5.6 0.00019 39.7 4.7 46 286-331 29-74 (434)
229 1fmh_A General control protein 65.3 7.5 0.00026 25.2 3.6 24 306-329 4-27 (33)
230 3viq_B Mating-type switching p 65.2 39 0.0013 26.8 8.5 51 282-332 8-70 (85)
231 2dq0_A Seryl-tRNA synthetase; 64.8 33 0.0011 34.4 10.1 62 281-344 44-108 (455)
232 3bas_A Myosin heavy chain, str 64.5 41 0.0014 26.3 8.6 44 284-327 44-87 (89)
233 3c3f_A Alpha/beta peptide with 64.3 14 0.00048 24.6 4.8 25 301-325 6-30 (34)
234 2b5u_A Colicin E3; high resolu 64.3 67 0.0023 33.1 12.1 26 271-296 317-342 (551)
235 1ses_A Seryl-tRNA synthetase; 64.2 50 0.0017 32.6 11.2 37 306-344 67-103 (421)
236 2akf_A Coronin-1A; coiled coil 64.1 17 0.00057 23.7 5.0 27 286-312 3-29 (32)
237 4e61_A Protein BIM1; EB1-like 64.1 35 0.0012 28.1 8.4 33 287-319 9-41 (106)
238 1m1j_C Fibrinogen gamma chain; 63.8 16 0.00054 36.5 7.5 44 287-330 89-132 (409)
239 1lq7_A Alpha3W; three helix bu 63.6 18 0.0006 26.8 5.8 12 316-327 54-65 (67)
240 2zxx_A Geminin; coiled-coil, c 63.6 43 0.0015 26.3 8.4 41 285-329 37-77 (79)
241 2wuj_A Septum site-determining 63.5 7.1 0.00024 28.4 3.7 25 306-330 30-54 (57)
242 3q0x_A Centriole protein; cent 63.3 14 0.00047 34.3 6.4 42 282-323 178-219 (228)
243 3tnu_A Keratin, type I cytoske 63.2 52 0.0018 27.2 9.6 15 312-326 86-100 (131)
244 1uii_A Geminin; human, DNA rep 62.9 24 0.00083 27.9 6.9 31 282-312 46-76 (83)
245 2oto_A M protein; helical coil 62.6 32 0.0011 29.2 8.4 21 285-305 60-80 (155)
246 1ytz_T Troponin T; muscle, THI 62.6 63 0.0022 26.5 11.3 37 293-329 46-89 (107)
247 1l8d_A DNA double-strand break 62.2 27 0.00092 27.7 7.3 33 295-327 70-102 (112)
248 2ke4_A CDC42-interacting prote 61.9 39 0.0014 27.2 8.2 30 301-330 60-89 (98)
249 2xu6_A MDV1 coiled coil; prote 61.7 21 0.00071 27.6 6.1 49 282-330 21-69 (72)
250 2ocy_A RAB guanine nucleotide 61.6 50 0.0017 28.8 9.4 24 307-330 112-135 (154)
251 3tnu_B Keratin, type II cytosk 61.6 59 0.002 26.8 9.6 19 309-327 81-99 (129)
252 4ath_A MITF, microphthalmia-as 61.2 15 0.0005 29.2 5.4 30 282-311 49-78 (83)
253 2wq1_A General control protein 60.9 18 0.00061 24.0 4.8 27 300-326 4-30 (33)
254 4fla_A Regulation of nuclear P 60.8 81 0.0028 27.2 10.6 48 278-325 82-129 (152)
255 2w6a_A ARF GTPase-activating p 60.5 51 0.0017 24.7 8.4 24 295-318 26-49 (63)
256 2bni_A General control protein 60.3 13 0.00043 24.9 4.1 24 301-324 6-29 (34)
257 2zvf_A Alanyl-tRNA synthetase; 60.2 6.6 0.00023 33.4 3.5 29 286-314 29-57 (171)
258 1m1j_B Fibrinogen beta chain; 59.8 94 0.0032 31.5 12.4 16 258-273 103-118 (464)
259 1uo4_A General control protein 59.8 15 0.00051 24.6 4.3 21 308-328 6-26 (34)
260 2z5i_A TM, general control pro 59.7 16 0.00056 26.2 5.0 31 285-315 8-38 (52)
261 1fxk_A Prefoldin; archaeal pro 59.6 22 0.00077 27.7 6.4 35 294-328 70-104 (107)
262 4gkw_A Spindle assembly abnorm 59.4 87 0.003 27.0 12.1 42 291-332 114-162 (167)
263 2dq3_A Seryl-tRNA synthetase; 59.3 17 0.00058 36.0 6.8 29 301-329 73-101 (425)
264 3e98_A GAF domain of unknown f 59.2 18 0.00062 33.4 6.6 27 284-310 81-110 (252)
265 3okq_A BUD site selection prot 59.0 77 0.0026 27.3 9.9 58 269-326 8-77 (141)
266 2b5u_A Colicin E3; high resolu 58.6 63 0.0021 33.3 10.7 28 284-311 316-343 (551)
267 3m0d_C TNF receptor-associated 58.3 53 0.0018 24.2 8.8 48 282-329 6-53 (65)
268 2q6q_A Spindle POLE BODY compo 58.2 59 0.002 25.0 8.0 32 299-330 27-58 (74)
269 4dk0_A Putative MACA; alpha-ha 57.9 51 0.0017 30.6 9.6 24 305-328 124-147 (369)
270 2wg5_A General control protein 57.7 7.3 0.00025 31.8 3.2 40 305-344 9-49 (109)
271 3viq_B Mating-type switching p 57.7 14 0.00047 29.4 4.7 26 285-310 4-29 (85)
272 2oa5_A Hypothetical protein BQ 57.6 5.7 0.00019 33.1 2.5 24 305-328 10-33 (110)
273 2hy6_A General control protein 57.5 24 0.00082 23.5 5.0 26 301-326 6-31 (34)
274 4ath_A MITF, microphthalmia-as 57.1 23 0.00079 28.0 5.9 39 281-330 38-76 (83)
275 1m1j_C Fibrinogen gamma chain; 56.8 27 0.00092 34.8 7.7 48 281-328 90-137 (409)
276 3mtu_A Tropomyosin alpha-1 cha 56.4 20 0.00068 27.5 5.3 46 283-328 17-62 (75)
277 3he4_A Synzip6; heterodimeric 56.4 16 0.00056 26.1 4.4 34 284-317 19-52 (56)
278 2zvf_A Alanyl-tRNA synthetase; 56.3 13 0.00046 31.4 4.8 30 300-329 29-58 (171)
279 1ik9_A DNA repair protein XRCC 56.2 41 0.0014 30.5 8.3 31 286-316 136-166 (213)
280 2i1j_A Moesin; FERM, coiled-co 56.1 8.9 0.0003 39.6 4.3 47 283-329 336-382 (575)
281 3k29_A Putative uncharacterize 56.1 1.1E+02 0.0037 27.1 12.4 18 260-277 32-49 (169)
282 2j5u_A MREC protein; bacterial 55.8 5 0.00017 37.2 2.2 10 292-301 46-55 (255)
283 3q0x_A Centriole protein; cent 55.7 66 0.0023 29.7 9.6 41 286-326 175-215 (228)
284 1joc_A EEA1, early endosomal a 55.7 40 0.0014 27.9 7.5 34 283-316 19-52 (125)
285 1t3j_A Mitofusin 1; coiled coi 55.6 39 0.0013 27.4 7.1 41 285-329 50-90 (96)
286 1x8y_A Lamin A/C; structural p 55.2 71 0.0024 24.8 8.8 50 278-327 31-80 (86)
287 2odv_A Plectin 1, HD1; plakin 55.2 1.2E+02 0.004 27.7 11.3 38 257-294 99-136 (235)
288 2aze_A Transcription factor DP 55.1 30 0.001 30.3 6.9 15 278-292 22-36 (155)
289 2r2v_A GCN4 leucine zipper; co 55.0 27 0.00091 23.3 4.9 28 300-327 5-32 (34)
290 3tq2_A KE1; parallel three hel 54.7 33 0.0011 22.6 5.3 31 299-329 4-34 (36)
291 3ni0_A Bone marrow stromal ant 54.5 86 0.0029 25.5 8.9 27 309-335 66-92 (99)
292 2yko_A LINE-1 ORF1P; RNA-bindi 54.5 21 0.00071 33.2 6.0 42 284-325 8-49 (233)
293 4ani_A Protein GRPE; chaperone 54.4 26 0.00091 32.0 6.7 25 283-307 74-98 (213)
294 3ghg_C Fibrinogen gamma chain; 54.3 12 0.0004 37.5 4.7 47 281-327 90-136 (411)
295 2z5i_A TM, general control pro 54.0 49 0.0017 23.7 6.7 40 289-328 5-44 (52)
296 2er8_A Regulatory protein Leu3 54.0 6.8 0.00023 28.6 2.3 22 281-302 48-69 (72)
297 3q4f_C DNA repair protein XRCC 53.7 24 0.00081 31.8 6.0 23 289-311 161-183 (186)
298 3ljm_A Coil Ser L9C; de novo d 53.6 19 0.00065 23.0 3.9 15 287-301 6-20 (31)
299 1fxk_A Prefoldin; archaeal pro 53.2 42 0.0014 26.1 7.0 32 299-330 68-99 (107)
300 3lay_A Zinc resistance-associa 53.0 50 0.0017 29.2 8.1 17 297-313 114-130 (175)
301 2q6q_A Spindle POLE BODY compo 52.7 76 0.0026 24.4 8.4 53 286-340 7-59 (74)
302 2dq3_A Seryl-tRNA synthetase; 52.6 23 0.00077 35.1 6.4 34 309-344 74-107 (425)
303 2wg5_A General control protein 52.0 12 0.00042 30.4 3.7 23 292-314 10-32 (109)
304 2zdi_C Prefoldin subunit alpha 51.9 22 0.00075 30.0 5.4 23 286-308 109-131 (151)
305 2zqm_A Prefoldin beta subunit 51.9 85 0.0029 24.6 12.6 32 299-330 73-104 (117)
306 3jsv_C NF-kappa-B essential mo 51.7 88 0.003 25.2 8.5 48 282-329 40-87 (94)
307 3vmx_A Voltage-gated hydrogen 51.5 64 0.0022 23.1 7.2 29 282-310 11-39 (48)
308 3qwe_A GMIP, GEM-interacting p 51.5 1.4E+02 0.0048 28.2 11.4 68 272-340 134-220 (279)
309 1gk4_A Vimentin; intermediate 51.4 64 0.0022 24.9 7.6 46 281-326 32-77 (84)
310 4b4t_J 26S protease regulatory 51.1 21 0.00073 35.4 6.0 56 282-344 25-81 (405)
311 2l5g_B Putative uncharacterize 50.8 32 0.0011 24.0 5.0 30 286-315 6-35 (42)
312 3lss_A Seryl-tRNA synthetase; 50.6 1E+02 0.0035 31.3 11.0 34 309-344 109-143 (484)
313 3onj_A T-snare VTI1; helix, HA 50.6 60 0.0021 25.6 7.5 48 283-330 42-93 (97)
314 1fxk_C Protein (prefoldin); ar 50.0 52 0.0018 26.8 7.3 40 285-324 91-130 (133)
315 3sjb_C Golgi to ER traffic pro 50.0 75 0.0025 25.6 7.9 18 301-318 54-71 (93)
316 3gp4_A Transcriptional regulat 49.9 59 0.002 27.1 7.8 27 287-313 86-112 (142)
317 1ytz_T Troponin T; muscle, THI 49.7 45 0.0015 27.4 6.7 41 282-322 49-89 (107)
318 2c9l_Y EB1, zebra, BZLF1 trans 49.1 77 0.0026 23.3 8.8 43 259-305 3-45 (63)
319 2no2_A HIP-I, huntingtin-inter 48.9 1.1E+02 0.0036 24.9 11.6 37 294-330 59-95 (107)
320 1lrz_A FEMA, factor essential 48.9 51 0.0018 31.9 8.2 21 282-302 247-267 (426)
321 2lw1_A ABC transporter ATP-bin 48.8 51 0.0018 25.5 6.7 48 282-329 29-82 (89)
322 4a3a_A Amphiphysin; structural 48.7 67 0.0023 29.2 8.5 19 277-295 139-157 (243)
323 2efr_A General control protein 48.6 1.3E+02 0.0046 26.0 12.4 27 290-316 99-125 (155)
324 2l5g_B Putative uncharacterize 48.4 39 0.0013 23.5 5.2 31 300-330 6-36 (42)
325 4b4t_J 26S protease regulatory 48.0 19 0.00067 35.7 5.1 26 288-313 38-63 (405)
326 3fpp_A Macrolide-specific effl 48.0 96 0.0033 28.4 9.7 24 305-328 123-146 (341)
327 1l8d_A DNA double-strand break 47.9 99 0.0034 24.3 11.2 52 279-330 28-98 (112)
328 1ykh_B RNA polymerase II holoe 47.5 39 0.0013 28.4 6.2 20 289-308 92-111 (132)
329 1yke_B RNA polymerase II holoe 47.4 37 0.0013 29.3 6.2 23 289-311 92-114 (151)
330 3iox_A AGI/II, PA; alpha helix 47.3 54 0.0019 33.6 8.2 30 284-313 36-65 (497)
331 1lwu_B Fibrinogen beta chain; 47.1 28 0.00094 33.6 5.9 26 301-326 33-58 (323)
332 3ljm_A Coil Ser L9C; de novo d 47.0 34 0.0012 21.8 4.3 24 307-330 5-28 (31)
333 1deq_A Fibrinogen (alpha chain 46.8 1.3E+02 0.0043 30.0 10.5 15 257-271 62-76 (390)
334 3rrk_A V-type ATPase 116 kDa s 46.8 40 0.0014 31.7 6.9 34 285-318 95-128 (357)
335 3l4q_C Phosphatidylinositol 3- 46.3 67 0.0023 28.4 7.8 45 285-329 113-157 (170)
336 3plt_A Sphingolipid long chain 46.2 95 0.0033 28.8 9.1 20 263-282 95-115 (234)
337 3he4_A Synzip6; heterodimeric 46.0 7.8 0.00027 27.8 1.3 41 287-327 8-48 (56)
338 3gp4_A Transcriptional regulat 45.9 1.3E+02 0.0044 25.0 9.4 27 291-317 83-109 (142)
339 1j1d_C Troponin I, TNI; THIN f 45.6 51 0.0017 28.1 6.6 39 293-331 62-107 (133)
340 1tu3_F RAB GTPase binding effe 45.5 37 0.0013 26.5 5.2 22 321-342 44-65 (79)
341 1d7m_A Cortexillin I; coiled-c 45.5 1.2E+02 0.0041 24.5 8.3 43 271-313 14-56 (101)
342 3sja_C Golgi to ER traffic pro 45.2 63 0.0021 24.4 6.3 22 306-327 35-56 (65)
343 3rrk_A V-type ATPase 116 kDa s 45.1 69 0.0024 30.1 8.3 28 284-311 228-255 (357)
344 4dzo_A Mitotic spindle assembl 44.8 53 0.0018 27.4 6.6 27 282-308 4-30 (123)
345 3a7o_A Autophagy protein 16; c 44.6 63 0.0022 25.0 6.3 10 282-291 32-41 (75)
346 2no2_A HIP-I, huntingtin-inter 44.3 1.3E+02 0.0043 24.5 12.2 53 279-331 51-103 (107)
347 2yko_A LINE-1 ORF1P; RNA-bindi 44.2 49 0.0017 30.7 6.8 47 284-330 1-47 (233)
348 1a93_A Coiled coil, LZ, MYC pr 43.9 42 0.0014 22.4 4.6 26 304-329 8-33 (34)
349 1t6f_A Geminin; coiled-coil, c 43.8 40 0.0014 22.8 4.5 20 287-306 12-31 (37)
350 1j1d_C Troponin I, TNI; THIN f 43.7 89 0.003 26.6 7.9 46 281-326 64-109 (133)
351 2e7s_A RAB guanine nucleotide 43.7 26 0.00087 30.1 4.5 19 311-329 97-115 (135)
352 2ve7_A Kinetochore protein HEC 43.6 43 0.0015 31.8 6.6 32 281-312 184-215 (315)
353 2gkw_A TNF receptor-associated 43.6 37 0.0013 29.5 5.7 34 284-317 2-35 (192)
354 3q4f_C DNA repair protein XRCC 43.6 37 0.0013 30.5 5.7 25 281-305 160-184 (186)
355 2b9c_A Striated-muscle alpha t 43.2 1.6E+02 0.0053 25.2 11.7 69 262-330 38-121 (147)
356 1fzc_C Fibrin; blood coagulati 43.2 11 0.00039 36.3 2.5 22 302-323 17-38 (319)
357 2xzr_A Immunoglobulin-binding 43.0 1.1E+02 0.0037 25.1 7.9 48 280-327 60-107 (114)
358 2l5g_A GPS2 protein, G protein 42.5 39 0.0013 23.0 4.3 22 294-315 13-34 (38)
359 2p22_A Suppressor protein STP2 42.5 43 0.0015 29.7 5.9 26 299-324 59-84 (174)
360 4h10_A ARYL hydrocarbon recept 42.5 53 0.0018 25.0 5.7 34 261-294 5-38 (73)
361 1j1d_B Troponin T, TNT; THIN f 42.3 52 0.0018 27.0 6.0 37 293-329 46-89 (106)
362 3k66_A Beta-amyloid-like prote 42.2 1.4E+02 0.0049 27.7 9.6 50 281-330 37-91 (239)
363 4dk0_A Putative MACA; alpha-ha 42.2 59 0.002 30.2 7.2 36 293-328 119-154 (369)
364 1x4t_A Hypothetical protein LO 41.8 78 0.0027 25.5 6.8 53 283-336 33-85 (92)
365 2ke4_A CDC42-interacting prote 41.5 1.3E+02 0.0043 24.2 8.1 20 311-330 63-82 (98)
366 2yo3_A General control protein 41.5 72 0.0025 30.2 7.6 51 276-326 210-260 (268)
367 3he4_B Synzip5; heterodimeric 41.4 85 0.0029 21.6 6.6 17 286-302 7-23 (46)
368 2j69_A Bacterial dynamin-like 41.1 78 0.0027 33.0 8.6 42 288-329 351-392 (695)
369 4b4t_L 26S protease subunit RP 40.9 27 0.00093 34.8 4.9 31 301-331 70-100 (437)
370 3u0c_A Invasin IPAB, 62 kDa an 40.5 2E+02 0.0069 25.7 10.2 77 256-332 66-146 (201)
371 3vp9_A General transcriptional 40.2 1.1E+02 0.0039 24.5 7.5 45 286-330 40-88 (92)
372 3n7n_E Monopolin complex subun 39.9 6.1 0.00021 32.1 0.0 32 293-324 40-71 (95)
373 4b4t_L 26S protease subunit RP 39.8 29 0.00099 34.6 4.9 33 284-323 67-99 (437)
374 3tq7_B Microtubule-associated 39.7 54 0.0018 25.8 5.4 47 282-328 8-54 (82)
375 2xnx_M M protein, M1-BC1; cell 39.0 1.8E+02 0.006 25.2 9.0 32 304-335 81-112 (146)
376 2aze_B Transcription factor E2 38.8 51 0.0018 26.8 5.4 31 286-316 10-40 (106)
377 2pnv_A Small conductance calci 38.6 40 0.0014 23.5 4.0 15 295-309 15-29 (43)
378 4dci_A Uncharacterized protein 38.5 1.4E+02 0.0048 25.8 8.4 17 283-299 44-60 (150)
379 1zxa_A CGMP-dependent protein 38.2 46 0.0016 25.3 4.7 14 316-329 38-51 (67)
380 2w6b_A RHO guanine nucleotide 37.9 1.2E+02 0.004 22.3 7.1 41 286-326 14-54 (56)
381 3mud_A DNA repair protein XRCC 37.9 53 0.0018 29.3 5.8 28 278-305 138-165 (175)
382 1j1e_C Troponin I, TNI; THIN f 37.7 1.1E+02 0.0038 27.3 7.9 16 316-331 92-107 (180)
383 2qyw_A Vesicle transport throu 37.6 1.5E+02 0.0052 23.5 8.6 31 278-308 45-75 (102)
384 1tu3_F RAB GTPase binding effe 37.4 84 0.0029 24.5 6.1 59 283-341 13-76 (79)
385 2aze_A Transcription factor DP 37.4 85 0.0029 27.4 6.9 30 293-322 9-38 (155)
386 1hs7_A Syntaxin VAM3; UP-and-D 37.2 51 0.0017 26.6 5.1 22 285-306 36-58 (97)
387 4fm3_A Uncharacterized hypothe 37.1 1.1E+02 0.0038 24.8 7.1 39 281-319 56-94 (98)
388 2lq4_p Lysophosphatidic acid r 36.9 7.2 0.00025 29.7 -0.0 44 284-327 15-79 (80)
389 3sjb_C Golgi to ER traffic pro 36.5 1.3E+02 0.0043 24.3 7.2 19 308-326 54-72 (93)
390 4ati_A MITF, microphthalmia-as 36.3 21 0.00072 29.5 2.8 16 282-297 74-89 (118)
391 2p22_A Suppressor protein STP2 36.2 93 0.0032 27.6 7.1 42 285-326 52-93 (174)
392 1j1e_C Troponin I, TNI; THIN f 35.9 81 0.0028 28.2 6.6 44 281-324 64-107 (180)
393 3mov_A Lamin-B1; LMNB1, B-type 35.6 1.6E+02 0.0056 23.3 8.6 48 279-326 41-88 (95)
394 3p7i_A PHND, subunit of alkylp 35.4 39 0.0013 31.5 4.8 49 254-302 263-311 (321)
395 3aon_A V-type sodium ATPase su 35.2 1.4E+02 0.0049 26.7 8.4 54 284-337 33-86 (217)
396 3l4f_A RHO guanine nucleotide 35.1 1.4E+02 0.0048 22.3 7.5 43 288-330 6-48 (61)
397 2efr_A General control protein 35.1 2.2E+02 0.0076 24.6 11.4 9 302-310 104-112 (155)
398 2zdi_C Prefoldin subunit alpha 34.9 94 0.0032 26.0 6.7 41 285-325 101-141 (151)
399 1qvr_A CLPB protein; coiled co 34.7 1.5E+02 0.0051 31.4 9.7 17 281-297 400-416 (854)
400 3ni0_A Bone marrow stromal ant 34.7 1.2E+02 0.0042 24.5 6.9 17 304-320 68-84 (99)
401 2djv_A Methionyl-tRNA syntheta 34.6 90 0.0031 24.0 6.0 22 312-333 42-63 (79)
402 1vcs_A Vesicle transport throu 33.8 1.8E+02 0.006 23.1 8.0 23 308-330 72-94 (102)
403 3fx0_A NF-kappa-B essential mo 33.8 24 0.00082 28.6 2.6 46 278-323 34-82 (96)
404 1zhc_A Hypothetical protein HP 33.7 45 0.0015 25.5 4.1 42 285-327 27-68 (76)
405 2aze_B Transcription factor E2 33.6 97 0.0033 25.1 6.3 33 290-322 7-39 (106)
406 3swk_A Vimentin; cytoskeleton, 33.3 1.7E+02 0.0058 22.7 8.6 58 281-338 6-63 (86)
407 2xnx_M M protein, M1-BC1; cell 33.1 2.4E+02 0.0082 24.4 8.9 32 299-330 69-100 (146)
408 1fmh_B General control protein 32.8 53 0.0018 21.2 3.6 22 308-329 6-27 (33)
409 2lf0_A Uncharacterized protein 32.7 91 0.0031 26.2 6.0 11 262-272 10-20 (123)
410 3iyn_Q Protein IX, PIX, hexon- 32.5 28 0.00096 29.7 2.9 8 199-206 33-40 (140)
411 3vlc_E Golgi to ER traffic pro 32.0 38 0.0013 27.4 3.5 11 301-311 61-71 (94)
412 1hwt_C Protein (heme activator 31.9 25 0.00086 25.9 2.3 22 280-301 56-77 (81)
413 3mtu_E Head morphogenesis prot 31.6 1.5E+02 0.005 23.1 6.6 39 291-329 32-70 (77)
414 2js5_A Uncharacterized protein 31.5 1.8E+02 0.006 22.3 7.8 28 303-330 38-65 (71)
415 1rtm_1 Mannose-binding protein 31.3 54 0.0018 26.5 4.5 14 285-298 7-20 (149)
416 3gwk_C SAG1039, putative uncha 30.8 1.1E+02 0.0036 23.0 5.9 29 302-330 54-82 (98)
417 3ibp_A Chromosome partition pr 30.6 2.2E+02 0.0075 27.4 9.1 11 285-295 227-237 (302)
418 3ljc_A ATP-dependent protease 30.5 2.1E+02 0.0071 25.6 8.7 26 301-327 224-249 (252)
419 3aon_A V-type sodium ATPase su 30.2 2.3E+02 0.008 25.3 8.9 30 285-314 41-70 (217)
420 3nr7_A DNA-binding protein H-N 30.1 2E+02 0.0068 22.5 7.7 46 283-328 25-70 (86)
421 1gax_A Valrs, valyl-tRNA synth 30.0 84 0.0029 34.0 6.8 30 29-64 398-427 (862)
422 1t3j_A Mitofusin 1; coiled coi 29.9 1.7E+02 0.0059 23.5 7.1 15 281-295 53-67 (96)
423 2efl_A Formin-binding protein 29.5 2.9E+02 0.01 24.5 9.6 28 297-324 131-158 (305)
424 3a5c_G V-type ATP synthase sub 29.3 1.7E+02 0.0058 26.4 7.8 37 285-321 26-62 (223)
425 2k48_A Nucleoprotein; viral pr 29.2 2.4E+02 0.0082 23.2 8.4 13 314-326 86-98 (107)
426 1lwu_B Fibrinogen beta chain; 28.9 74 0.0025 30.6 5.6 8 301-308 40-47 (323)
427 3zwh_Q Myosin-9; Ca-binding pr 28.8 23 0.0008 24.9 1.5 26 303-328 6-31 (45)
428 4f3l_B BMAL1B; BHLH, PAS, circ 28.8 33 0.0011 32.9 3.1 39 256-294 4-42 (387)
429 2i1j_A Moesin; FERM, coiled-co 28.5 79 0.0027 32.5 6.1 11 282-292 342-352 (575)
430 3hhm_B NISH2 P85alpha; PI3KCA, 28.3 1.6E+02 0.0055 28.7 8.0 26 304-329 220-245 (373)
431 1lwu_A Fibrinogen alpha-1 chai 28.3 1.1E+02 0.0039 25.5 5.9 40 284-323 24-63 (119)
432 1j1d_B Troponin T, TNT; THIN f 28.3 2.4E+02 0.0082 22.9 9.4 41 282-322 49-89 (106)
433 3pik_A Cation efflux system pr 28.2 3.6E+02 0.012 24.9 11.4 30 278-307 347-376 (446)
434 3swy_A Cyclic nucleotide-gated 28.0 1.6E+02 0.0054 20.7 6.2 26 283-308 6-31 (46)
435 4ad8_A DNA repair protein RECN 27.9 1.8E+02 0.006 28.8 8.4 30 280-309 205-240 (517)
436 1gk7_A Vimentin; intermediate 27.7 1E+02 0.0035 20.8 4.6 17 289-305 20-36 (39)
437 3gpv_A Transcriptional regulat 27.6 93 0.0032 26.0 5.4 14 313-326 112-125 (148)
438 4avm_A Bridging integrator 2; 27.6 2.3E+02 0.008 25.3 8.5 52 281-332 32-83 (237)
439 4b4t_M 26S protease regulatory 27.5 48 0.0016 33.0 4.2 36 287-322 37-72 (434)
440 3ghg_C Fibrinogen gamma chain; 27.3 1.8E+02 0.006 29.1 8.1 42 290-331 92-133 (411)
441 2f1m_A Acriflavine resistance 27.2 1.3E+02 0.0043 26.8 6.6 27 302-328 104-130 (277)
442 2a3d_A Protein (de novo three- 27.2 36 0.0012 25.5 2.4 59 269-330 9-71 (73)
443 3tul_A Cell invasion protein S 27.0 83 0.0028 27.5 5.0 48 281-328 75-125 (158)
444 1vcs_A Vesicle transport throu 27.0 1.3E+02 0.0043 23.9 5.9 23 301-323 72-94 (102)
445 4a3a_A Amphiphysin; structural 27.0 2.7E+02 0.0092 25.1 8.8 56 278-333 34-89 (243)
446 1cii_A Colicin IA; bacteriocin 26.8 4.1E+02 0.014 27.4 10.6 23 284-306 358-380 (602)
447 3l4q_C Phosphatidylinositol 3- 26.7 2.6E+02 0.0088 24.6 8.2 48 284-331 98-145 (170)
448 1r8i_A TRAC; VIRB5, helical bu 26.6 88 0.003 27.8 5.4 36 303-338 15-50 (213)
449 1rtm_1 Mannose-binding protein 26.6 73 0.0025 25.7 4.5 24 287-310 2-25 (149)
450 4i0x_B ESAT-6-like protein MAB 26.5 1.4E+02 0.0049 22.9 6.0 50 281-330 31-87 (103)
451 1zhc_A Hypothetical protein HP 26.3 96 0.0033 23.6 4.8 47 283-330 18-64 (76)
452 3sja_C Golgi to ER traffic pro 26.3 1.1E+02 0.0038 23.0 5.0 15 314-328 36-50 (65)
453 1flk_A TNF receptor associated 26.1 75 0.0026 28.4 4.8 27 287-313 41-67 (228)
454 3gpv_A Transcriptional regulat 26.1 1.3E+02 0.0043 25.1 6.0 33 292-324 98-130 (148)
455 3pjs_K KCSA, voltage-gated pot 26.0 75 0.0026 26.9 4.6 43 274-316 123-165 (166)
456 3tq2_A KE1; parallel three hel 25.9 1.4E+02 0.0049 19.5 5.5 31 285-315 4-34 (36)
457 3n5l_A Binding protein compone 25.8 1E+02 0.0036 28.1 5.9 45 258-302 258-302 (310)
458 1avy_A Fibritin, gpwac M; bact 25.7 1.6E+02 0.0056 22.6 5.9 34 290-323 9-42 (74)
459 1r8e_A Multidrug-efflux transp 25.4 1.7E+02 0.006 25.9 7.2 23 286-308 83-105 (278)
460 2lf0_A Uncharacterized protein 25.2 67 0.0023 27.1 3.9 45 281-325 9-58 (123)
461 4aj5_K Spindle and kinetochore 25.1 3.1E+02 0.01 23.1 8.3 49 283-331 51-99 (123)
462 1xaw_A Occludin; coiled-coil, 24.9 3.1E+02 0.011 23.5 8.2 21 309-329 115-135 (140)
463 2p4v_A Transcription elongatio 24.9 2.7E+02 0.0093 23.6 8.0 21 309-329 52-72 (158)
464 3pjs_K KCSA, voltage-gated pot 24.7 1.4E+02 0.0047 25.2 6.1 39 268-306 124-162 (166)
465 1urq_A M-tomosyn isoform; tran 24.7 1.4E+02 0.0048 22.0 5.3 36 278-313 28-63 (63)
466 4ioe_A Secreted protein ESXB; 24.5 1.1E+02 0.0037 22.6 4.8 31 285-315 12-42 (93)
467 3thf_A Protein shroom; coiled- 24.4 2.6E+02 0.009 25.1 7.9 46 277-322 14-59 (190)
468 1lq7_A Alpha3W; three helix bu 24.4 62 0.0021 23.8 3.2 40 283-322 26-67 (67)
469 2efk_A CDC42-interacting prote 24.3 3.8E+02 0.013 23.8 9.5 55 274-328 101-155 (301)
470 1ez3_A Syntaxin-1A; three heli 24.2 2E+02 0.0069 22.7 6.7 48 281-328 18-68 (127)
471 2l5g_A GPS2 protein, G protein 23.9 1.1E+02 0.0039 20.7 4.1 24 299-322 11-34 (38)
472 4ghu_A TNF receptor-associated 23.9 1.2E+02 0.0041 26.5 5.7 33 284-316 2-34 (198)
473 3iyn_Q Protein IX, PIX, hexon- 23.8 74 0.0025 27.1 4.0 38 278-315 94-131 (140)
474 2gd5_A Charged multivesicular 23.8 1.3E+02 0.0043 26.0 5.7 38 292-329 10-47 (179)
475 3brv_B NF-kappa-B essential mo 23.6 2.5E+02 0.0085 21.5 7.5 49 270-318 21-69 (70)
476 4aj5_1 SKA3, spindle and kinet 23.5 3E+02 0.01 22.4 9.4 70 257-328 19-88 (101)
477 1ytz_I Troponin I; muscle, THI 23.4 1.2E+02 0.004 27.2 5.5 48 284-331 57-104 (182)
478 2vs0_A Virulence factor ESXA; 23.4 1.7E+02 0.0057 21.5 5.7 33 285-317 9-41 (97)
479 3a6m_A Protein GRPE, HSP-70 co 23.3 1.2 4.2E-05 39.6 -7.5 64 281-344 18-81 (177)
480 3mtu_E Head morphogenesis prot 23.0 2.7E+02 0.0092 21.6 8.2 50 280-329 28-77 (77)
481 3ilw_A DNA gyrase subunit A; D 22.8 1.7E+02 0.0059 29.7 7.2 46 281-326 415-460 (470)
482 3bbp_D GRIP and coiled-coil do 22.6 45 0.0015 25.6 2.2 49 291-341 17-65 (71)
483 4avm_A Bridging integrator 2; 22.5 2.6E+02 0.0088 25.0 7.8 53 277-329 134-190 (237)
484 4g1a_A AQ-C16C19 peptide; heli 22.5 30 0.001 22.2 1.0 29 283-311 1-29 (32)
485 3t97_B Nuclear pore complex pr 22.4 2.5E+02 0.0086 21.1 6.6 38 278-315 6-43 (65)
486 1uix_A RHO-associated kinase; 22.3 2.6E+02 0.009 21.3 8.2 48 281-328 3-50 (71)
487 3etw_A Adhesin A; antiparallel 22.3 3.4E+02 0.012 22.6 8.5 71 257-328 19-89 (119)
488 2akf_A Coronin-1A; coiled coil 22.3 1.2E+02 0.0041 19.6 3.8 31 291-321 1-31 (32)
489 2w6b_A RHO guanine nucleotide 22.2 2.3E+02 0.008 20.7 7.7 45 285-329 6-50 (56)
490 1s1c_X RHO-associated, coiled- 22.2 90 0.0031 23.9 3.8 33 298-330 1-33 (71)
491 4dzo_A Mitotic spindle assembl 22.1 2.2E+02 0.0074 23.6 6.6 38 289-326 4-41 (123)
492 3fpp_A Macrolide-specific effl 22.0 1.9E+02 0.0063 26.5 6.8 44 285-328 65-108 (341)
493 3umh_A Amyloid beta A4 protein 22.0 1.5E+02 0.005 27.2 5.9 81 256-338 16-97 (211)
494 3brv_B NF-kappa-B essential mo 21.9 2.7E+02 0.0092 21.3 8.4 49 281-329 11-66 (70)
495 1yc9_A VCEC, multidrug resista 21.9 4.8E+02 0.016 24.1 10.9 67 261-327 326-392 (442)
496 3rvy_A ION transport protein; 21.9 19 0.00065 32.7 0.0 42 273-314 240-281 (285)
497 4gif_A Polycystic kidney disea 21.8 2.1E+02 0.0073 20.1 5.7 36 281-316 6-41 (45)
498 3l4f_A RHO guanine nucleotide 21.6 2.5E+02 0.0087 20.9 7.0 43 286-328 11-53 (61)
499 3onj_A T-snare VTI1; helix, HA 21.6 2.9E+02 0.01 21.5 7.1 44 281-324 40-94 (97)
500 1buu_A Protein (mannose-bindin 21.5 88 0.003 25.9 4.1 24 287-310 21-44 (168)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.49 E-value=3.3e-14 Score=105.64 Aligned_cols=53 Identities=40% Similarity=0.553 Sum_probs=49.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
||++|+++||+||++||.||++|+++||.+|..|+.||..|+.++..|++++.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999999999999999999999877653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.42 E-value=1.1e-12 Score=99.52 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=52.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|+.+|..|+.++..|..-
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998877777666543
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.39 E-value=1.3e-12 Score=98.42 Aligned_cols=57 Identities=33% Similarity=0.457 Sum_probs=51.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|+.++..|+.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999887666666654
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.35 E-value=1.3e-12 Score=98.82 Aligned_cols=57 Identities=30% Similarity=0.444 Sum_probs=50.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
|++||+.+||+||++||.||++++++|+.+|+.|+.+|..|..++..|+.++..|+.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999887766665544
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.31 E-value=3.2e-12 Score=97.39 Aligned_cols=52 Identities=35% Similarity=0.493 Sum_probs=44.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 262 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
.++++.+||+||+|||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556999999999999999999999999999999999999988877653
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.23 E-value=2.6e-11 Score=94.30 Aligned_cols=61 Identities=30% Similarity=0.358 Sum_probs=56.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 263 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 263 ~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
.||+.+||+|+|.+|.||++||.+||.+|..|+.++..|..++..|+.++..|..||..|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999999999999999999999999999888888888887764
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.21 E-value=2.7e-11 Score=92.10 Aligned_cols=57 Identities=30% Similarity=0.478 Sum_probs=45.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 260 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 260 ~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
+|+++++++||.||+|||.||++++++|+.+++.|+.+|..|+.++..|+.|+..|+
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999977766655554
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.97 E-value=1.7e-09 Score=87.28 Aligned_cols=61 Identities=26% Similarity=0.336 Sum_probs=50.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 321 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~ 321 (353)
+...|+.+|.+||+|||.++++...+++.++..|+.||..|+.+|..|+.++..|+.-...
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666788999999999999999999999999999999999999997665555544444333
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.89 E-value=4.7e-09 Score=83.09 Aligned_cols=55 Identities=29% Similarity=0.389 Sum_probs=48.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 262 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
...|+.+|.+||+|||.++++...+++.++..|+.||..|+.+|..|+.++..|+
T Consensus 16 Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566889999999999999999999999999999999999999977765555554
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.81 E-value=1.2e-10 Score=97.26 Aligned_cols=58 Identities=26% Similarity=0.346 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 254 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 254 ~~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
..+..++|.+||+++||.+|++||.||.+++++||.++..|..+...|..++..|+.+
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E 87 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLE 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999999876666555555444444444333
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.56 E-value=4.4e-07 Score=73.64 Aligned_cols=68 Identities=22% Similarity=0.378 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 256 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 256 DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+-.++|..||..+||.+|+.||.||.+.+.+||.++..|. .+++.|++++..+..|...++.++..|.
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~-------~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLI-------QQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3377899999999999999999999999888776665555 4555555555666777777777777765
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.22 E-value=0.00062 Score=47.72 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
|+|+.+||.++..|+..|.+|..++..|+.|+..|+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 589999999999999999999998877755444444
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.86 E-value=0.00047 Score=55.75 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018605 258 RELKRQKRKQSNRESARRSRLRKQAECEELQA 289 (353)
Q Consensus 258 re~KR~RRk~~NRESARRSR~RKq~~leeLE~ 289 (353)
..+|..||+.+||.+|++||.||.+.+++|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 45678899999999999999999999888753
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.71 E-value=0.0055 Score=44.65 Aligned_cols=48 Identities=42% Similarity=0.551 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+.|-++|+.|+.||..|++|++.-..++.+|+.|-..+++-|..|++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 478899999999999999999999999999999999999999988864
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.40 E-value=0.012 Score=46.70 Aligned_cols=53 Identities=32% Similarity=0.414 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 338 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L 338 (353)
+.-|+.+++.|+.+|..|..++..++...+.|..||.+|+++..... +.|+.|
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq--~Rl~~L 74 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 44555566666666666666666655555556666666666555544 444443
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=96.07 E-value=0.019 Score=47.10 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~-------el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+++-+||.+++.|+.||..|+. +|..|..+++.|+.||..|+.+-..-
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788888888888888777 78888888888888888888765543
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.92 E-value=0.028 Score=44.67 Aligned_cols=52 Identities=33% Similarity=0.440 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
=|.++++|+.+-..|..+++.++.....|..++++|+.|...+.++|..|-|
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888888765
No 18
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.86 E-value=0.022 Score=46.88 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 308 LSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 308 L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.++++++|+.|+..|+++|..|..
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446677778888888888777764
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.84 E-value=0.038 Score=47.60 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+.+.+++.|+.+++.+..|+..|+.++..++.+++.+..++..|++++..|+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666666666666666666666666555
No 20
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.72 E-value=0.041 Score=41.36 Aligned_cols=40 Identities=35% Similarity=0.531 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
..-|.+|.+|..-|..|.+|+..|+.+++.|.+||..||.
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 3448899999999999999999999999999999999973
No 21
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=95.51 E-value=0.066 Score=39.67 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=37.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 264 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 264 RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
+++-+||.++|+||.|=+..++-... -...-..||.+|+--|.+++..-++..+..
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~---------------------vaaaks~en~rlr~l~kqmcpsldvdsiip 59 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYRE---------------------VAAAKSSENDRLRLLLKQMCPSLDVDSIIP 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHCTTCCHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhhcccchHHHHHHHHhCCcccccccCC
Confidence 45567999999999987765544322 223345678888888888886666555443
No 22
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=95.47 E-value=0.053 Score=38.09 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
-+..||.+|..|+.||..|+++.-.-+.-+.-|+.|...||.+|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 367899999999999999999988888888999999999998774
No 23
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.35 Score=42.43 Aligned_cols=73 Identities=14% Similarity=0.014 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 258 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 258 re~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+.+..++..+.+..-++.-.....++.+-..-++.|+.|...|+-++..+..+...|+.||..|-+++..-.
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555556666667788899999999999999999999999999999988776654
No 24
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=94.91 E-value=0.027 Score=37.58 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
++..||.+|+.|-.+|..|..++.+|+.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3567999999999999999999988865
No 25
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=94.81 E-value=0.26 Score=39.82 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 273 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 273 ARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+|.|++-+-|...=. ...+ .+...|..++..|..+.+.|..||..+..++..+.
T Consensus 28 q~RRtlKNRgyAq~CR--~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCR--YKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665554432 2222 34577888888888888888888888888877765
No 26
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=94.79 E-value=0.035 Score=37.16 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
++..||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 57789999999999999999988888653
No 27
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.79 E-value=0.081 Score=39.67 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
..+...|+.+...|..++..|+.++..|+.|+..|+..|..
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788888888888888888888888888888777654
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.72 E-value=0.3 Score=49.17 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
++..+.+.|+.|...|+.+++..++....|+.|+..++++|.+|
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555555555544
No 29
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=94.72 E-value=0.12 Score=37.19 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+.++..|+.-|..|..++..|+..|..++.|+.+|+.-|.+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999987764
No 30
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=94.55 E-value=0.088 Score=38.97 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
|+++..|+..|..|..++..|+..|.+.+.|+.+|..-|.+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999887765
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.53 E-value=0.22 Score=42.80 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+.+++++.++..|..++..++.+++.+++++..|+.++..|..++..|.
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666666666554
No 32
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.45 E-value=0.065 Score=36.32 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
++..||.+|+.|-.+|..|..++.+|++.+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 5788999999999999999999988876543
No 33
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=94.32 E-value=0.21 Score=39.77 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 295 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 295 e~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
-.||..|..+|..|++++..|+.+|..|++-....
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999998776654
No 34
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=94.28 E-value=0.17 Score=36.77 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 321 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~ 321 (353)
+.+|+.++..|...|..|...+...+.++..|..|...
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665555554444444444443
No 35
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=94.17 E-value=0.084 Score=41.72 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.++++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777776666666666665553
No 36
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=94.14 E-value=0.29 Score=36.10 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
.+..|+.+...|..++..|+.++..|+.|+..|+..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666666666666666554
No 37
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.09 E-value=0.1 Score=43.64 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+..|+.++..|+..+..|+..|..|.+.+..|+...+....-|..+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 3445555555555555555555555555555555544444444444
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.08 E-value=0.23 Score=49.97 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=5.2
Q ss_pred chhhhhhhcCCC
Q 018605 333 EAVANLEQSNPT 344 (353)
Q Consensus 333 ~~i~~L~~~~~~ 344 (353)
..+..|++..+.
T Consensus 572 ~~~~~l~~~~~~ 583 (597)
T 3oja_B 572 QKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHhcC
Confidence 345555554443
No 39
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=94.00 E-value=0.074 Score=36.02 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
++..||.+|+.|..+|..|..++.+|+..+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4678999999999999999999988876543
No 40
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=93.89 E-value=0.073 Score=35.62 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
++..||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57789999999999999999998888653
No 41
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=93.86 E-value=0.15 Score=39.90 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
+++++||.++.-++.-..+|-..|...+.++..|+.+...|.++|..+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57889999999999999999999999999999999999999999888764
No 42
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=93.85 E-value=0.55 Score=34.97 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
+..|+.+...|..+...|+.++..|..|...|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555444
No 43
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.74 E-value=0.053 Score=51.16 Aligned_cols=54 Identities=22% Similarity=0.422 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhcCC
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNP 343 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g-~~~i~~L~~~~~ 343 (353)
++.+|+.++..|..+|..|..+++.+ +.|+..|+++|.+|.. +..+.++...++
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~a-------r~El~~LkeElerL~sPPL~iGtvlev~d 109 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEA-------RQQLLALREEVDRLGQPPSGYGVLLATHD 109 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHH-------HHHHHHHHHHHHHHHSCCEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCceEEEEEEEcC
Confidence 34555666666666665555555555 5555555555555543 444555444443
No 44
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.72 E-value=0.25 Score=35.95 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+.++..|+.++..|..++..|.+-+...+.|...|+++|.+|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777889999999999999999999999999999999998874
No 45
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=93.54 E-value=0.35 Score=40.82 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+|+.|+.|+..|..+|..+..+.+.|+.+|..|..+|..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 3477777777777777777777778888888777776654
No 46
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.54 E-value=0.22 Score=38.71 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777777777666666666666655555543
No 47
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=93.46 E-value=0.25 Score=34.57 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
+..|+.+-..|..++..|.+.+..|..||..||+-|
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 455666666666666666666666666666666554
No 48
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=93.44 E-value=0.098 Score=34.82 Aligned_cols=28 Identities=7% Similarity=0.311 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
+..||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5688999999999999998888888653
No 49
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=93.40 E-value=0.2 Score=39.59 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 296 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 296 ~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.||..|..+|..+++++..|+.||..|++-+...+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888999999999999999888887766553
No 50
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=93.09 E-value=0.11 Score=34.85 Aligned_cols=28 Identities=14% Similarity=0.461 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
++..||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5678899999999999999888888764
No 51
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.08 E-value=0.21 Score=45.32 Aligned_cols=12 Identities=42% Similarity=0.479 Sum_probs=6.7
Q ss_pred chhhhhhhcCCC
Q 018605 333 EAVANLEQSNPT 344 (353)
Q Consensus 333 ~~i~~L~~~~~~ 344 (353)
..|++|++.||+
T Consensus 109 ~~ireLEq~NDd 120 (189)
T 2v71_A 109 KYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH
Confidence 445666665554
No 52
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=93.07 E-value=0.11 Score=34.83 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
++..||.+|+.|-.+|..|..++.+|++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678899999999999999988888865
No 53
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.03 E-value=0.69 Score=36.99 Aligned_cols=36 Identities=31% Similarity=0.335 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
+.++++|+.+-..|+.++..|..++..|+.-+.++-
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 344455555555555555555555555554444443
No 54
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=93.02 E-value=0.0075 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 018605 258 RELKRQKRKQSNRESARRSRLRKQA 282 (353)
Q Consensus 258 re~KR~RRk~~NRESARRSR~RKq~ 282 (353)
..+|..||+-+||.+|++||+||.+
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4567889999999999999999854
No 55
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=92.95 E-value=0.39 Score=37.24 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
-...|+.++..|+.+.+.|+.+|..|+.+|..|.+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34567777888888888889999999999988765
No 56
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=92.81 E-value=0.13 Score=34.51 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
++..||.+|+.|-.+|..|..++.+|++-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56789999999999999999998888653
No 57
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=92.67 E-value=0.94 Score=35.49 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
.++++|+.+-..|+.++..|..++..|+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 58
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=92.62 E-value=0.21 Score=36.41 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.++.|+.||.+|+.++ ..|..++..|+.+|.
T Consensus 20 d~eaLk~E~~eLk~k~-------~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKY-------EAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 4555555555555555 444555555555554
No 59
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=92.60 E-value=0.32 Score=44.57 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
||..|..+|..|++++..|+.||..|+
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 60
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=92.60 E-value=0.18 Score=36.83 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
+.|..+++.|+.++..|..+++.|+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 61
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=92.59 E-value=0.18 Score=34.20 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 295 SNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 295 e~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
-.||..|..+|+.-.+++..|+.||.+|++
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 358999999999999999999999998875
No 62
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=92.51 E-value=0.16 Score=33.80 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
+.+||.+|+.|-.+|..|..++.+|++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568899999999999988888888764
No 63
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=92.28 E-value=0.58 Score=35.98 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
.+|+.....|..||..|+.+|..|..++.
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 64
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.23 E-value=0.8 Score=50.85 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 018605 314 KLTSENNSIKEDLSRLC 330 (353)
Q Consensus 314 ~L~~EN~~LkeeL~~L~ 330 (353)
.|+.||..|++++.+|.
T Consensus 1027 ~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 65
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=92.16 E-value=0.59 Score=38.58 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
..+++++..+..|+.++.+...+++.++..+..|..+...|+.+|..
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555556666666666666666666655543
No 66
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=91.65 E-value=0.22 Score=32.41 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 312 (353)
++..||.+|.+.+.||-+|.+++..|..+|
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 356788888888888888888888877665
No 67
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=91.27 E-value=0.21 Score=47.16 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
.+.++..|+.+.+.|..+...|+.||..|++|++.|.
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667788888888888899999999888877776664
No 68
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=91.23 E-value=1.8 Score=34.20 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 338 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L 338 (353)
+-+|..+++.|+.|+..|+-+++.+..++..|....+.+-..|...-....++.|
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~~~~~~~ 76 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQL 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4667888888888888888888888888888887777777777655444444433
No 69
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.04 E-value=0.94 Score=33.92 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 294 LSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
-+.....|..++..|+.++..|..|+..|+++|
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666665554
No 70
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=91.03 E-value=1.1 Score=35.45 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
-...|..+...|..+.+.|+.+|..|+.+|..|.+
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667778888888888899999999999998875
No 71
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=90.96 E-value=0.68 Score=46.15 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+++++|+++++.|+.++..++.++..+++++.+...+.+.|..+|.+|.|
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356778888888888888888888888888888888888889999998876
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=90.89 E-value=0.71 Score=45.74 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
.++++++|+++++.|+.++..|..++..|++++...+.+.+.|..+|.+|.|.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45667777778888888888888888888888888888888888888888753
No 73
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=90.72 E-value=1.1 Score=34.81 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el 305 (353)
.+++|+.++..++.++..|+.++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 74
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=90.61 E-value=1.9 Score=31.72 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
....|..++..|..++..|..+...|+.++..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 75
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.37 E-value=2.7 Score=35.05 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 268 SNRESARRSRLRKQAECEELQARVETLSN---ENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 268 ~NRESARRSR~RKq~~leeLE~rv~~Le~---EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
.|-.+|-+.=..|+..|++|++++..++. .+.-|+.++...+..+..-+..-.+|.
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~ 89 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLV 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHH
Confidence 34455555666677778888777777777 556677777766665554443333333
No 76
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=90.26 E-value=3.2 Score=32.81 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 269 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 269 NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
|-.||=.+-.|-|+ .+..++...+..|..+.+++.....++..|..|...|++++..|+..
T Consensus 14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33444444444332 34556677888888888999999999999999999999999887643
No 77
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.17 E-value=2.5 Score=35.54 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
....-+.++.+|+.+|..|+.+...-+.....+..+|+.|+.|+..|
T Consensus 34 l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 34 MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777776666665555555555555544
No 78
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=89.73 E-value=2.3 Score=30.70 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.+..+++++.++..++.+...+..++..+.+.+...+.+...|+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555665555555555555555555554
No 79
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.61 E-value=4.4 Score=36.06 Aligned_cols=59 Identities=29% Similarity=0.388 Sum_probs=31.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 265 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 265 Rk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..+.--+.=|+.|.+-.+.+.+|+.++..|+.|...++..+ ..+..+|..|.++|..|.
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~-------~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL-------EKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 33444445566666666666666666666665555555444 444444444444444443
No 80
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.59 E-value=1.1 Score=49.91 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
++.++..|+.|+..|+.++..+.++.+.|+.++..|+
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 81
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.45 E-value=1.6 Score=35.15 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
++.+|+.+-+.|..+...|..+...|
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 82
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=89.31 E-value=0.62 Score=31.30 Aligned_cols=29 Identities=14% Similarity=0.341 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
++.++...+++++.|+.+|..|.+++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 44455555555566666666666666554
No 83
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=89.18 E-value=0.62 Score=36.54 Aligned_cols=41 Identities=32% Similarity=0.496 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
+|-.+|+.|..|+..|+.++..+++-...++..+..|.++|
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 84
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=89.12 E-value=1.2 Score=34.67 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhc
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~ 341 (353)
.+|+.|+..|+...+-+..-|+.|...+.....+...|+.+|..|. +.+..+...
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~--~rl~~~~~~ 64 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRST 64 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhc
Confidence 4688899999999999999999999999999999999999998887 555555543
No 85
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=88.88 E-value=3.4 Score=32.87 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 306 QRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 306 ~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..-+++++.|+.+..+++..|..|
T Consensus 54 ~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 54 SHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444444
No 86
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=88.84 E-value=0.55 Score=31.45 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
++.+||.+|+.|-.++..|..++.+|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677888888888888888888877754
No 87
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=88.62 E-value=1.9 Score=34.29 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 296 NENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 296 ~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.||..|..++..+++++..|+.||..|++-...
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888777765544
No 88
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=88.17 E-value=0.58 Score=36.27 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
|+..|+.++..|+.+...|+.++..|+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433333
No 89
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=88.16 E-value=6.2 Score=30.98 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
...+++++.|.+--+.|..=-+.|..-|.+|.++...|......|+.+...|.
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777888888888888888888888888877775
No 90
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.90 E-value=2.6 Score=34.42 Aligned_cols=23 Identities=17% Similarity=0.136 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018605 307 RLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 307 ~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..+.+...+...|..|+++|...
T Consensus 73 ~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 73 DARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33556677778888888887653
No 91
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=87.80 E-value=0.24 Score=46.27 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 018605 294 LSNENRNLRDELQRLS---EECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 294 Le~EN~~L~~el~~L~---~e~~~L~~EN~~LkeeL~~L 329 (353)
|..||++|++|+..|+ .+++.|+.||.+|++.|..-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDIT 62 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3344444444444443 23467888999999877643
No 92
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=87.79 E-value=0.9 Score=41.17 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
+.-|..|..||..|..+++....+++.|+.+...|++++
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444555555555555554444444444444444444
No 93
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=87.63 E-value=6 Score=30.65 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=39.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 264 KRKQSNRESARRSRLRKQAECEELQARVETL---SNENRNLR---DELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 264 RRk~~NRESARRSR~RKq~~leeLE~rv~~L---e~EN~~L~---~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.|+.....+-|+.|.+=...+.+|..-|-.. ......|. .-|..|+.+.+.|..|+..|+.++...
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555666777776677777877654321 01111122 344556677777777777777777664
No 94
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.62 E-value=2.9 Score=32.33 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
.+.+.+.+...++.+...|..++..|..+++.+.........+|
T Consensus 28 ~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 28 DKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333
No 95
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.37 E-value=3 Score=35.19 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 295 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 295 e~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.+.++|+.||..|.++++.+..|..+||.+...+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 33456666666666666666666666666665544
No 96
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=87.36 E-value=1 Score=35.07 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
..|+.+...|..+.+.|+.||..|+.+|..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455555555555555555554
No 97
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=87.11 E-value=4.8 Score=32.67 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcC
Q 018605 267 QSNRESARRSRLRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 342 (353)
Q Consensus 267 ~~NRESARRSR~RKq~~leeLE~rv~~Le---~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~ 342 (353)
..|..+|-..=..|+..+++|...+..++ ..+..|+.++...+..+..-++.-.+|.++...|. ..++.|...+
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~--~ql~~lq~q~ 84 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ--EQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH--HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHH
Confidence 34556677777778999999998888888 56677888888888777766665555555555544 4444444433
No 98
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.01 E-value=1.1 Score=34.84 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
......|..|..++..+..+++.|+.+|.+++
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444555555555555555553
No 99
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.88 E-value=1.3 Score=45.74 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
+|+++++.|+.+...-...|..|+.-++.++.+.++|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333344444444444444444333
No 100
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=86.79 E-value=3.5 Score=32.56 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
..=+..++.|+.+|..|+..++++.-+++.|++....+-.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555554444444443
No 101
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=86.78 E-value=2 Score=33.80 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRL------SEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L------~~e~~~L~~EN~~LkeeL~~L 329 (353)
|.+++.|+.+++.|+.+...|..++..- -.++..|..+...|..+|..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888887776421 133444444444444444443
No 102
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.74 E-value=3.7 Score=33.67 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
..+.+|+.+|+.|+.||+.|+.+.+..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666655554433
No 103
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=86.68 E-value=2.9 Score=29.66 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
+..|+..|-+|...-+.|..-+..|+.|..+|..
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3334444444444334444444444444444433
No 104
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=86.44 E-value=2.8 Score=32.47 Aligned_cols=47 Identities=23% Similarity=0.226 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+.+-+.++..|+....--.+-.++|..++-.|--||.-|.++|..|+
T Consensus 27 L~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 27 LKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 34445555556555555555667788888888999999999988775
No 105
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.38 E-value=9.7 Score=29.32 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..-+.+++.++.++...+..+..+..+|..|+..+..|..+...+.++|....
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888888888888888888888888888888888888777654
No 106
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=85.99 E-value=1.2 Score=40.91 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcC
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 342 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~ 342 (353)
+.|+.+++.|+.++..|+.++.+++.+++-++....+=++++........+.+|...+
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVl 119 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVL 119 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4444455555555555555555555555555554444445555554444444444443
No 107
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=85.87 E-value=3.2 Score=34.18 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
+++-|..+++.++....+|+.++.....+++.++.....|+.++..|+.
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999998874
No 108
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=85.87 E-value=4.3 Score=29.52 Aligned_cols=45 Identities=2% Similarity=0.140 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.+++|..+|..|..+...|..++..|+.+......|-.+--++|.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677777777777777777777766666666666555555543
No 109
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.71 E-value=2.9 Score=30.38 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 304 ELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 304 el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+..|..++..|..||..|+.+|..|.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666654
No 110
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.67 E-value=1.3 Score=44.23 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+|..+++.|+.+...|..+.+.|+++...|+.|...|++++..|+.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45666666677777777777777777777777777778888887765
No 111
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.54 E-value=5 Score=35.68 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 275 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 275 RSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.-|+||+. .+|...+..++..+.+|+..+..|......|..|+..|..+|..
T Consensus 29 ~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 29 AVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555654 55555556666666666666666665555555555555554443
No 112
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=85.35 E-value=5.6 Score=31.47 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=36.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 267 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 267 ~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
++.+.+-++-=.+=+.-...++.++...+..|..|..++..|+++++.|+.+
T Consensus 23 IqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 23 VLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444444444445555666777888888899999999988888888887654
No 113
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=85.09 E-value=10 Score=28.51 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 262 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
-+.-..+||+=|-..=..| +++|...+..-..+....+.+|..|+..++.|+.|+..|+
T Consensus 18 YE~ia~knr~EaE~~y~~k---~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 18 YESVAAKNLQEAEEWYKSK---FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455665554333222 4556666665555555566666666666666666665554
No 114
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=84.97 E-value=5.6 Score=28.59 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+..|+..+..+..+...++.++..++..+..+..+...+++.|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666666653
No 115
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.70 E-value=2.5 Score=43.69 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcC
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 342 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~ 342 (353)
+|+.++..|++++......++.|+.-|+.+. ..|..|+.-|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~--~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL--VDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4555555555555544455555555555544 4444444433
No 116
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=84.70 E-value=4 Score=31.56 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|..|+.+++.-+.+-..++.++..+.+.+..-..|...|+..|.+|
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344555555555555555666666666666666666666666666665
No 117
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.48 E-value=14 Score=29.56 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=33.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 262 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+....++|+....-....+.+++.|..+-..+-.+-..++.++..+..+...|.++..-...+|.+|+
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555555444444444444444444444444444444444555555555555555555555543
No 118
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=84.20 E-value=2 Score=33.97 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
.|+.++..|..++..|+.++..|+.+...|
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444
No 119
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.17 E-value=15 Score=29.55 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
.-+..+..++.+...++.+...|..++..|..+++.+.......+.
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444333333
No 120
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.12 E-value=12 Score=29.77 Aligned_cols=30 Identities=27% Similarity=0.573 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
+...|+.+|..+..+...|..|...|.+.+
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 121
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=83.93 E-value=4.4 Score=28.79 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+||.+|+.|+.-...|+.++.+|-.++.. -...|+.+|..|.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 57888888888888888888777655544 3456677776664
No 122
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.82 E-value=11 Score=34.50 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNL 301 (353)
Q Consensus 287 LE~rv~~Le~EN~~L 301 (353)
|..+++.++.++..|
T Consensus 95 L~kEie~~~~~i~~l 109 (256)
T 3na7_A 95 LNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 123
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=83.77 E-value=2.3 Score=27.66 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 300 NLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
.|++++..|+.++..|+-|...|+
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 124
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=83.75 E-value=8.4 Score=33.73 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
-++.|..++..|+.++..|..++..|++|+..|..
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666655543
No 125
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=83.73 E-value=8.6 Score=37.59 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 304 ELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 304 el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+|++|+.++..|..+++.++.+++++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444443
No 126
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=83.72 E-value=4.5 Score=31.81 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.|..|+.+++.-+.+-..++.++..|.+.+..-..|...|+..|.+|
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34555555555555555566666666666666566666666666554
No 127
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=83.66 E-value=0.65 Score=36.31 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcC
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 342 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~ 342 (353)
|...|+.+|..|.+++.+|+.||..||. +..++.+.-|..++
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~----~aspEql~q~q~~l 57 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT----LASPEQLEKFQSRL 57 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSSSCSCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHhcc
Confidence 4455677777777777888888887765 55666666666555
No 128
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.05 E-value=11 Score=34.66 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
++.+|+.++..|+.+...+..++..++.++..+..+...+
T Consensus 33 el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 33 DLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 129
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=83.00 E-value=6.8 Score=30.21 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+.++..+..|+.+...++.++.....+++.|..-...|-.+|.
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIa 50 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555444444444443
No 130
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.82 E-value=13 Score=36.42 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 296 NENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 296 ~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
.+....+.+++.|+++.+.|+.++.+|
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 333333333333333333333333333
No 131
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=82.75 E-value=8.9 Score=30.50 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 298 NRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 298 N~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
...-..+|..|++++..+......|
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444433333333
No 132
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=82.45 E-value=2.2 Score=42.18 Aligned_cols=50 Identities=10% Similarity=0.168 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
-++++++|+++++.|+.++.+|.+++...+.+...|.++...|+..|.-+
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 34455777777777777777777777777777777777777777665543
No 133
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=82.27 E-value=1.8 Score=40.32 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=23.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECE-------ELQARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~le-------eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
+|.||.++-=.==-|+|+-+...++ ++..+++.|+.||++|+.+|+.|+.+..+.+.+
T Consensus 120 ~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te 184 (250)
T 2ve7_C 120 KRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5777765443333345555544444 444455555555555555555555554444433
No 134
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=82.06 E-value=14 Score=30.82 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.+.+.++..|......|..+|..|...+......|..|...-..+
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443333333
No 135
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=81.95 E-value=1.3 Score=32.36 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
.|+++...++.|..||..|+.++..|++
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555443
No 136
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=81.83 E-value=3.2 Score=32.26 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
.+||..|+.+...|..++..|+.++..|+.++++|
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46777777777777777777777777776665543
No 137
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=81.67 E-value=6 Score=27.60 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 304 ELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 304 el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++..|..+++.|+.....|+.+|..|.
T Consensus 21 elaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555556666666666666666554
No 138
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=81.65 E-value=3 Score=40.47 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.++..||..|...+.+...|+..+..++.++..|..+...|+.+|...
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~ 59 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP 59 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556666777777777777777777777777777777777666543
No 139
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.62 E-value=9.6 Score=31.71 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+++-..|.+++.|+.++.+|+.+++....-...|..+|..|...+...
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~ 58 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQA 58 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 344455666777777777777777777666667777777776555444
No 140
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.52 E-value=13 Score=36.43 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
++++....+++.|++||+.|+.++..+.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 3333333344444444444444443333
No 141
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=81.26 E-value=4.4 Score=33.62 Aligned_cols=70 Identities=24% Similarity=0.292 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH---HHHHHHHHHHHHHHH---HHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVE-------------TLSN---ENRNLRDELQRLSEE---CEKLTSENNS 321 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~-------------~Le~---EN~~L~~el~~L~~e---~~~L~~EN~~ 321 (353)
|+..|+...-.+-|+.|.+=...+.+|..-|- .|+. -...|+.++..|+++ ...|+.+|..
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~ 102 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRH 102 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555567777777777777777776433 2222 233455555555543 5567788888
Q ss_pred HHHHHHHhc
Q 018605 322 IKEDLSRLC 330 (353)
Q Consensus 322 LkeeL~~L~ 330 (353)
|..+|..|.
T Consensus 103 L~~riqeLE 111 (118)
T 4ati_A 103 LLLRVQELE 111 (118)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 888877765
No 142
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=81.18 E-value=4.2 Score=29.84 Aligned_cols=45 Identities=22% Similarity=0.388 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.+++..+..|+.+...++.++.....+++.|..=...|-.+|...
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatY 47 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATY 47 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455666666777777777777776667666666555555555443
No 143
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=81.06 E-value=19 Score=28.68 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 320 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~ 320 (353)
+..++.+...++.+...|..++..|..++..+.....
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433333333
No 144
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.88 E-value=10 Score=31.73 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+-+..|..|+..+..|..++..-+...+....||..|+.++..+.
T Consensus 36 ~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888999999888888899999999999999874
No 145
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.58 E-value=21 Score=29.73 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+.-|+++++..+..-..=|.--+++..+.+.|..++..|..++..
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4455555555555544444444444555555555555555554443
No 146
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.37 E-value=19 Score=28.22 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+-.....+|+.+...|..+...|..++..+.+.|..|......|..+|..|.
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788888888888888888888888899999888888888888774
No 147
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=80.35 E-value=0.74 Score=42.96 Aligned_cols=35 Identities=9% Similarity=0.211 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.+..+...+..+++.|++++..|+.++..|+.++.
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444433
No 148
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=80.22 E-value=2.5 Score=32.81 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
-+|+.+|+.++..|+.++..|+.+++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677777777777777777777766544
No 149
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=80.18 E-value=4.2 Score=31.64 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++||.+|+.|+.-...|+.++.+|-.++... ...|+.+|..|.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE 45 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVE 45 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4577777777777777777777776555433 234444444443
No 150
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=79.98 E-value=1.2 Score=28.07 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 292 ETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
..|+-||..|.+++..|++++..|+
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777766666553
No 151
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=79.91 E-value=9 Score=30.54 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 312 (353)
.++.+|..+|+.+..++..|..++..|..+.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443333
No 152
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.85 E-value=16 Score=30.34 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+|+.++..|+.....+...+..|..+...|..+...|+.+|..+
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443
No 153
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=79.59 E-value=13 Score=37.80 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.|+.++..|++++..|+.+...|.++|..
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555544443
No 154
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=79.56 E-value=20 Score=27.97 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
-...++.+...+..|+.+...++.++.....+++.|..=...|-.+|...
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34456677777777788888888888777777777776666666666544
No 155
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=79.47 E-value=2.6 Score=34.52 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 312 (353)
.+..|..+|+.|+.||..|+.++..|.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444333
No 156
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=79.14 E-value=8.8 Score=38.53 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
|..++..|++++..|+.+...|.++|..
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444
No 157
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=78.89 E-value=11 Score=28.94 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 275 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 275 RSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+-|...+..+..||.++..++.+.+....+.+.|-.-...|..|....+.-|+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677788899999999999999999999999999999999999988886654
No 158
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=78.85 E-value=15 Score=27.57 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
..+++.|+.....-...+...+.++..|+.....|..+|..|.|
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45667777766666677777777888888888888888777653
No 159
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=78.84 E-value=1.6 Score=27.39 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018605 294 LSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~ 312 (353)
|+..|..|++++..|.-++
T Consensus 5 lkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 4444444444444443333
No 160
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=78.83 E-value=7.9 Score=28.12 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.++..|..+.+.|..++..|+.+...|+.+....+++..+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777777777766666554
No 161
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=78.72 E-value=1.9 Score=28.69 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018605 307 RLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 307 ~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+|..+++.|..+|..|..++..|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444443
No 162
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=78.53 E-value=2.9 Score=26.84 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L 308 (353)
.|..-+..|++||.+|+.+++.|
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666555544
No 163
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=78.42 E-value=3.7 Score=26.69 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~ 312 (353)
+..|..+|+.|+..|-.-+++++.|+.+|
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45677777777777777777777776655
No 164
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=78.35 E-value=12 Score=29.62 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
-+.|..+++.++.|...|+.++..| ..|-.+-+-|..-|.+|.
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L----~elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555554 233444455555555554
No 165
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=78.24 E-value=3.2 Score=27.82 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 297 ENRNLRDELQRLSEECEKLTSENN 320 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~ 320 (353)
+|...++.|+.|+.++..|+.|..
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 166
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=78.21 E-value=27 Score=28.64 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=30.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 264 KRKQSNRESARRSRLRKQAECEELQ---ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 264 RRk~~NRESARRSR~RKq~~leeLE---~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+|..+|+.|-+.--.+=.+....|+ .++...+.+..+=.+|+.++..+.+.|.+.|--|..++..|
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~ 102 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARI 102 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3556666665533222222222222 33333444444444555555555555555555555554444
No 167
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=77.95 E-value=11 Score=38.51 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 277 RLRKQAECEELQARVETLSNENRN----------LRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 277 R~RKq~~leeLE~rv~~Le~EN~~----------L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
|+.-+.++++|+.+...+..+... |..++..|++++..|+.+...|.++|..
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555544433 4444555555555555555555555443
No 168
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=77.74 E-value=12 Score=29.54 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 319 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 319 (353)
-+++.+|.-+|..|+.|-.+...++..-+.++..|..+.
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345666666666666665555544444444444444333
No 169
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=77.70 E-value=7.7 Score=27.44 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSEN 319 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 319 (353)
|...--+|+..-+.|.+-+..|+.++..|+.|.
T Consensus 15 lkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 15 LKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333444444445555555555555555543
No 170
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=77.15 E-value=18 Score=28.31 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 277 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 277 R~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
|.|=++.+..-+.+++.|+.-..+|+.=-..|..-+..|..|-..|...|..|.
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666666666666666666666666665
No 171
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=76.64 E-value=10 Score=31.38 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
++.++..++..|..+...|+..++.|.++
T Consensus 12 eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 12 ELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 172
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=76.50 E-value=18 Score=32.08 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018605 304 ELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 304 el~~L~~e~~~L~~EN~~L 322 (353)
+|+.|.+++..|+.+...+
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 173
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=76.13 E-value=27 Score=34.50 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|+.++..|++++..|+.+...|.++|..+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666665555543
No 174
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=76.09 E-value=5.4 Score=26.64 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
|..+++.|-.+...|+.|..+|++-|
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44444444444555555555555443
No 175
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=75.96 E-value=6.9 Score=25.40 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L 308 (353)
.|.+++..|+.|...|+-++..|
T Consensus 6 alkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 176
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=75.94 E-value=7.8 Score=28.64 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 275 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 275 RSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
-.|+|.. -..|..+|+.|+..|.+..+|+.+|..
T Consensus 13 ~~kLKq~--n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 13 LLRLKQM--NVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 377888999999999998888888843
No 177
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=75.89 E-value=22 Score=36.21 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 278 LRKQAECEELQARVETLSNENRNLRD-----------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~-----------el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
+.-+.++++|+.+...+..+...|+. +.+.|.++...|..+...|.+++..+. +.+..+...+|.
T Consensus 80 r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~--~~l~~~l~~iPN 155 (501)
T 1wle_A 80 RQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE--EQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 33344455555555555555444432 233455555555555555555555555 445555555554
No 178
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=75.58 E-value=26 Score=27.12 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
...|-...+..++..+..|+.+...++.++.....+++.|..=.-.|-.+|...
T Consensus 20 ~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 20 MEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334445567778888888888888888888888888888877777777776654
No 179
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=75.08 E-value=3.8 Score=39.23 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
++++.|+.+|+.|+.++++|+.+.+.+...
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344455555555555555554444444443
No 180
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=74.95 E-value=8.7 Score=35.16 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhhhcCCC
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG--PEAVANLEQSNPT 344 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g--~~~i~~L~~~~~~ 344 (353)
++-+.|..+|+.|+.|+..|+.++..|+ .|..+.+-|..-|.+|.+ ++.+-.|..+.++
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLk----eLae~~q~la~vi~~l~~~~~~~~e~~~~~~~d 175 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELA----EVAEHVQYMAELIERLNGEPLDNFESLDNQEFD 175 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcccccCchhhhcc
Confidence 4445666677777777777777766663 344455556666666655 2334444444433
No 181
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=74.95 E-value=33 Score=33.34 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
|.+++.+-+.++++|+.|...|..+|+.++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556666666666666665554
No 182
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=74.92 E-value=6.6 Score=30.07 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 270 RESARRSRLRKQAECEELQARVETL 294 (353)
Q Consensus 270 RESARRSR~RKq~~leeLE~rv~~L 294 (353)
-..-|+.|.+=...+++|..-|-.+
T Consensus 17 n~~Er~RR~~in~~f~~Lr~lvP~~ 41 (80)
T 1hlo_A 17 NALERKRRDHIKDSFHSLRDSVPSL 41 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 3344444444455566666655443
No 183
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=74.68 E-value=1.8 Score=33.76 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
++.|..++..|+..|.+|..|...|
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 184
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=74.60 E-value=1.6 Score=36.34 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQR 307 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~ 307 (353)
.-+|+|+.++..|+-||..|+++|..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34799999999999999999999874
No 185
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.53 E-value=12 Score=46.28 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+..+|.++|..|+++++.+..|...|+.+++
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433
No 186
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=74.34 E-value=5.9 Score=35.67 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
+.++-|=..+..|+.+|..|++++++|+.+..+..
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555444433
No 187
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=74.18 E-value=4.2 Score=31.87 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 287 LQARVETLSNENRNLRDEL-------QRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el-------~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+-.+|+.|-.||.+|..-- ..|-.+.+.|..|+..|+.+|..++
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445555566665554322 2233444555555555555555544
No 188
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.01 E-value=6 Score=39.32 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+++++|+++++.++.++..|.+++.....+...|.++...|+..|.-
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 33456666666666666666666666666666666666666655443
No 189
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=73.87 E-value=36 Score=27.99 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.++.+...|++.+..+.-....|+.+...|+++|.=|
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444555555555554433
No 190
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=73.82 E-value=0.061 Score=43.38 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 018605 258 RELKRQKRKQSNRESARRSRLRKQ 281 (353)
Q Consensus 258 re~KR~RRk~~NRESARRSR~RKq 281 (353)
.-++..||+-+||.+|++||.||.
T Consensus 63 ~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 63 ALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHhhhhHHHHHHcchhhc
Confidence 445678899999999999999985
No 191
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=73.52 E-value=15 Score=30.26 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~ 341 (353)
..++++..+.+.-......+..++..|+..+..+..-...|..+|..|. +.|.+|...
T Consensus 48 ~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~--eEl~FLKk~ 105 (119)
T 3ol1_A 48 EDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ--EEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3445555555544445566677777777777777777778888888887 666666543
No 192
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=73.45 E-value=2.6 Score=32.48 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+|.+++..++..+..|..-+..-..-+..|..+|.-||++|.+|.
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444555555555555555554
No 193
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=72.70 E-value=12 Score=34.12 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 334 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~ 334 (353)
+++|+++-.....+...|......|++||..|+..|..|.|...
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~s 75 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTS 75 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHH
Confidence 34567777777788888888889999999999999999999654
No 194
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.33 E-value=6.4 Score=39.21 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
.++..|+++++.|+.++..|+.++..|++++..++.|+..|+.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456788888899999999999999999999999999888765
No 195
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=72.03 E-value=31 Score=27.57 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..+++.++..+..|+.+...++.++.....+++.|..-.-.|..+|...
T Consensus 36 ~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777777777777777777777766666666665544
No 196
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=72.02 E-value=8.7 Score=37.23 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLS 309 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~ 309 (353)
.+..|+.+++.++...+.|..+|..|+
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 197
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=71.98 E-value=19 Score=28.39 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018605 303 DELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 303 ~el~~L~~e~~~L~~EN~~L 322 (353)
.++..|+++.+.-..|...|
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL 73 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33333333333333333333
No 198
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.98 E-value=38 Score=27.48 Aligned_cols=45 Identities=18% Similarity=0.371 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|+.++...+.+...|..++..-+......+.++..|..+|+.|
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444443
No 199
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=71.90 E-value=1.9 Score=41.82 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
++|..||.+|..++.+...|+..++.|+.++..|......|..+|...
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~ 51 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 51 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 466777888888888888888888888888888877777777766543
No 200
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=71.57 E-value=13 Score=33.73 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~ 312 (353)
|.++++....|+..|+.++..|+++.
T Consensus 32 L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33334444444444444444444333
No 201
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=71.48 E-value=9.3 Score=25.82 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+|..+++.|..+...|+.|..+|++.|.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444555555555555555555555544
No 202
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=71.40 E-value=3.9 Score=26.25 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 018605 308 LSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 308 L~~e~~~L~~EN~~LkeeL~~L 329 (353)
|..-+..|+.||.+|+.+++.|
T Consensus 4 lnallasleaenkqlkakveel 25 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788888888887766
No 203
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=71.33 E-value=17 Score=31.05 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
.++|+.++..|+..|..|+.++..++.++..|
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888887776444
No 204
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=71.15 E-value=16 Score=28.14 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
|...|..|..|+.+|..++..+++++..+..
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~e 32 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKD 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666665543
No 205
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=71.05 E-value=0.81 Score=37.96 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 292 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|+.++..|..+++.|..++..|+.|...|+.++..|
T Consensus 61 ~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 61 EELEKQKAELQQEVEKLASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 206
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.93 E-value=44 Score=27.71 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..+..++..+..|+.+...++.++.....+++.|..=.-.|-.+|...
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatY 124 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666666666555665555443
No 207
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.52 E-value=36 Score=29.69 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 018605 309 SEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 309 ~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+.+...++..|..|+.+|..-.
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~ 128 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKD 128 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777776654
No 208
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=70.18 E-value=6.5 Score=30.02 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
..|...+.+||..+..-..++.+|+.++..++.-
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888888888888888777666443
No 209
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=69.91 E-value=19 Score=27.72 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
+|...|..|..|+.+|..++..+++++..+..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~e 34 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888777777776653
No 210
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=69.87 E-value=15 Score=36.01 Aligned_cols=54 Identities=26% Similarity=0.444 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.|=+...+.|..+++.|+.....|..+++.....+..|..+...|+-+|..|+.
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 344455566667777777777777777777666777777777777766666654
No 211
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.86 E-value=16 Score=29.04 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.|+.....|..++..|..++..+..+...|+..|..+.+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555666667777777777777777777777766653
No 212
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=69.77 E-value=12 Score=33.54 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
+.+|+.++..|+.+|+.|+.+.+...++
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444443
No 213
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=69.72 E-value=8.7 Score=26.20 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 303 DELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 303 ~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.++...-++...|+.+|..|..+|..
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444556666666666666543
No 214
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=69.72 E-value=11 Score=37.60 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
++.++||+++..|+.....-...|..|+.-++.++.+.++|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778887777777555433466677776666666666666555
No 215
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=69.40 E-value=47 Score=33.88 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
++.++||.++.-|+.....--..|..|+.-++.++.+.++|..-|
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777766544433666666666666666666665443
No 216
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.23 E-value=47 Score=27.39 Aligned_cols=46 Identities=11% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+..++..+..|+.+...++.++.....+++.|..=.-.|-.+|...
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555443
No 217
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=68.99 E-value=30 Score=35.18 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 305 LQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 305 l~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
...|++++..|+.+...|.++|..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 218
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=68.68 E-value=19 Score=32.15 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 302 RDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 302 ~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..+++..+++++.| |..|+++|..|
T Consensus 185 e~el~~ak~~ye~l---n~~L~~eLp~l 209 (251)
T 2fic_A 185 EEELIKAQKVFEEM---NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33444444444433 44455554444
No 219
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=68.66 E-value=4.3 Score=29.44 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el 305 (353)
..+++.|+.++..|+.+...|+..|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888888887777654
No 220
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=68.50 E-value=17 Score=32.51 Aligned_cols=36 Identities=8% Similarity=0.010 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENN 320 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~ 320 (353)
..-++.|..|+.+|..|..++...++++..+..+..
T Consensus 131 ~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 131 CYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666666555555555555543
No 221
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=68.45 E-value=31 Score=25.07 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+..+..|+.++..++.+.+....+.+.|-.-...|..|....+.-|+
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 56678899999999999999888999998888999999998887765
No 222
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=68.31 E-value=21 Score=29.20 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
+.|+.+++.|+.....|+.++..+.++++++
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544444443
No 223
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=67.57 E-value=11 Score=24.95 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
|..+++.|-.+...|+.|..+|++-|
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444444444445555555554433
No 224
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=67.17 E-value=20 Score=33.46 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
..++.+|..+++.|...-..+.++|..|+++-..|+.++..++.+|..++-
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999988863
No 225
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=65.96 E-value=14 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.328 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
|..+++.|-.+...|..|..+|+..|.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 444444444444555555555555443
No 226
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=65.78 E-value=19 Score=25.93 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
+||.+-+++|. .|+.+...|+.++ .++.+.+|..+..+|
T Consensus 6 rrr~e~ld~l~----~LEkqF~~LkEql--Y~ERl~ql~~~Leel 44 (49)
T 2xus_A 6 RRRSECVSEML----DLEKQFSELKEKL--FRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45555555553 4777777777665 334444444444444
No 227
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=65.76 E-value=32 Score=35.02 Aligned_cols=18 Identities=6% Similarity=0.237 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDEL 305 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el 305 (353)
..+++.|+++-..+.++|
T Consensus 46 ~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.65 E-value=5.6 Score=39.75 Aligned_cols=46 Identities=39% Similarity=0.431 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
+|+.++..|+.|...|+.++.+++.++..|+.+...+++++..+..
T Consensus 29 ~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~ 74 (434)
T 4b4t_M 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQ 74 (434)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444455555555666666666666666667666777777766654
No 229
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=65.31 E-value=7.5 Score=25.23 Aligned_cols=24 Identities=21% Similarity=0.482 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 306 QRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 306 ~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|..+..+.+.||-+|.+++.+|
T Consensus 4 aqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344455555566666666555554
No 230
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=65.23 E-value=39 Score=26.82 Aligned_cols=51 Identities=8% Similarity=0.022 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 282 AECEELQARVETLSNENRNLRDE------------LQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~e------------l~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
+++..|+.++..|+.+...|..+ .-.+-.++..++.--..|-..|..++|.
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv 70 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKC 70 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 44455555555555555554432 2222334444444445566666666653
No 231
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=64.85 E-value=33 Score=34.38 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 281 QAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~---el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
+.++++|+.+...+..+...|+. +...|..+...|..+...|.+++..+. +.+..+...+|.
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 108 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK--KKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 33444444444444444443322 133455566666666666666666665 555555555555
No 232
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=64.46 E-value=41 Score=26.27 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+..|..+...|..+.......+..|......|..+...|.++|.
T Consensus 44 ~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 44 NVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555666666666666666666666666553
No 233
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=64.32 E-value=14 Score=24.62 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
|..+++.|-.+...|+.|..+|++-
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 234
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=64.31 E-value=67 Score=33.13 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 271 ESARRSRLRKQAECEELQARVETLSN 296 (353)
Q Consensus 271 ESARRSR~RKq~~leeLE~rv~~Le~ 296 (353)
|.|+|-=+|-+++|++.+.-++.++.
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~e 342 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQE 342 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554444444333
No 235
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=64.25 E-value=50 Score=32.60 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 306 QRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 306 ~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
..|..+...|..+...|.+++..+. +.+..+...+|.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 103 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKE--ARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 3455555555555555555555555 445555555555
No 236
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=64.12 E-value=17 Score=23.68 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~ 312 (353)
.||+.+..|+.-.++|++++.+|.+-.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666677777777777776665443
No 237
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=64.11 E-value=35 Score=28.12 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSEN 319 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 319 (353)
|..++..++.+...|..++..|+..++.|+.|-
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkER 41 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 238
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.80 E-value=16 Score=36.49 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+..++..|+........+|..|+..+..+......|+.+|..|.
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444443333344444455444555555555555554443
No 239
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=63.64 E-value=18 Score=26.78 Aligned_cols=12 Identities=17% Similarity=0.435 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 018605 316 TSENNSIKEDLS 327 (353)
Q Consensus 316 ~~EN~~LkeeL~ 327 (353)
+.|...|.++|.
T Consensus 54 eeevkkleeeik 65 (67)
T 1lq7_A 54 EEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 240
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=63.63 E-value=43 Score=26.26 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.|..+|+.++.++..|+.++..| ..|..+-..|.+-|.+|
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L----~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 334444444444444444444443 33344444454444444
No 241
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=63.52 E-value=7.1 Score=28.41 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 306 QRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 306 ~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..+.++++.|..||..|+++|..|.
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666554
No 242
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=63.32 E-value=14 Score=34.29 Aligned_cols=42 Identities=10% Similarity=0.289 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
+++..|+++++..+.|+..++..+...++...+|+..-..+.
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 356778888888888888888888777777777766665554
No 243
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.21 E-value=52 Score=27.23 Aligned_cols=15 Identities=0% Similarity=0.151 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 018605 312 CEKLTSENNSIKEDL 326 (353)
Q Consensus 312 ~~~L~~EN~~LkeeL 326 (353)
+..|+.+...++.++
T Consensus 86 i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEM 100 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 244
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=62.94 E-value=24 Score=27.92 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 312 (353)
++-+.|..+|+.|+.|+..|+.++..|++-.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666665433
No 245
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=62.60 E-value=32 Score=29.21 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el 305 (353)
.+|+.....|+.++..++.+.
T Consensus 60 ~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 60 QALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 246
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=62.57 E-value=63 Score=26.47 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 018605 293 TLSNENRNLRDELQRLSEECE-------KLTSENNSIKEDLSRL 329 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~-------~L~~EN~~LkeeL~~L 329 (353)
.|+..+.+|...|..|.++-- .-.-|...|+.++.+|
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 344444445454444444433 3345566666666666
No 247
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=62.22 E-value=27 Score=27.68 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 295 SNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 295 e~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+.+...|..++..|+.+...|..+...|+.++.
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555544
No 248
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=61.95 E-value=39 Score=27.17 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+..+|..+..+++.|+.+...|...|..+.
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777777777777777777764
No 249
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=61.68 E-value=21 Score=27.63 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.++.++..+++.|...-..+..++..|.++-..|+.+...+..+|..++
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888888888887788887777777766554
No 250
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.62 E-value=50 Score=28.82 Aligned_cols=24 Identities=17% Similarity=0.100 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 307 RLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 307 ~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.++.++..|+.+...-...|..++
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 251
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.61 E-value=59 Score=26.80 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018605 309 SEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 309 ~~e~~~L~~EN~~LkeeL~ 327 (353)
+..+..|+.+...++.++.
T Consensus 81 q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3333444444444444433
No 252
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=61.24 E-value=15 Score=29.16 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
+++.+++.+...|+..|..|..++++|+.+
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 344455566666666666666666655443
No 253
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=60.93 E-value=18 Score=24.00 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
+|..+++.|-.+...|..|..+|++-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455555555555555555555433
No 254
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=60.80 E-value=81 Score=27.16 Aligned_cols=48 Identities=17% Similarity=0.066 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
..=.+|+..|+.+++.-..-...|..-...+++.+.+.+......+.+
T Consensus 82 ~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~K 129 (152)
T 4fla_A 82 LLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQK 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555444444444444444444433333333333333
No 255
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=60.50 E-value=51 Score=24.68 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 295 SNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 295 e~EN~~L~~el~~L~~e~~~L~~E 318 (353)
++..++|.+-...|.+|+..|..+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~ 49 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQRE 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHH
Confidence 333333333333333333333333
No 256
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=60.32 E-value=13 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
|..+++.|-.+...|..|..+|++
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 344444444444444455444444
No 257
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=60.18 E-value=6.6 Score=33.38 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEK 314 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~ 314 (353)
+|..+|+.|..++.+|+++++.|+.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666555444
No 258
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=59.83 E-value=94 Score=31.49 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhHHHH
Q 018605 258 RELKRQKRKQSNRESA 273 (353)
Q Consensus 258 re~KR~RRk~~NRESA 273 (353)
++++..-..+.|+.+.
T Consensus 103 qeLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 103 RDLKDRVAKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhH
Confidence 4444444555555443
No 259
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=59.77 E-value=15 Score=24.56 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018605 308 LSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 308 L~~e~~~L~~EN~~LkeeL~~ 328 (353)
|..+.+.|..+|..|..++..
T Consensus 6 LEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 333344444444444444433
No 260
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=59.67 E-value=16 Score=26.19 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
+..|+.|..|+.+...|..++..-+.++..+
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i 38 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAI 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444555555555444444444333333333
No 261
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=59.64 E-value=22 Score=27.72 Aligned_cols=35 Identities=9% Similarity=0.203 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 294 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
|+.....|..++..|..++..+..+...|+..|..
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555554443
No 262
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=59.43 E-value=87 Score=27.03 Aligned_cols=42 Identities=33% Similarity=0.458 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 291 VETLSNENRNLRDELQ-------RLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 291 v~~Le~EN~~L~~el~-------~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
|+.|..-.-.|+++++ ..-.-++.|..||..++++|...+.+
T Consensus 114 Ve~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~Q 162 (167)
T 4gkw_A 114 VESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQ 162 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 4444444444444443 23345778999999999999887643
No 263
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=59.34 E-value=17 Score=36.02 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
|+.++..|++++..|+.+...|.++|..+
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 264
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=59.16 E-value=18 Score=33.39 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSN---ENRNLRDELQRLSE 310 (353)
Q Consensus 284 leeLE~rv~~Le~---EN~~L~~el~~L~~ 310 (353)
+.+||.++..|-. +|..+..++..|.-
T Consensus 81 ~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l 110 (252)
T 3e98_A 81 NIEMRHRLSQLMDVARENDRLFDKTRRLVL 110 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333 55555555554443
No 265
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=58.98 E-value=77 Score=27.33 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 269 NRESARRSRLRKQAECEELQARVETLSNENRNLRD------------ELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 269 NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~------------el~~L~~e~~~L~~EN~~LkeeL 326 (353)
||..--.++.+=-.+.+.|=.+|+.|+.-.+.||. +++.+..++..+..++..|.+.|
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i 77 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFI 77 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555666666666665555544 44555555555555555554443
No 266
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=58.61 E-value=63 Score=33.33 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
++.+|++++++++|..+-.+-+.++++.
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er 343 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQER 343 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665554444444444
No 267
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=58.34 E-value=53 Score=24.25 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.-+.+|+.++..++.-...|..+++.+.-+.+.+..++..=++.+..|
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~L 53 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSL 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345566666666666555555566555555555544433333334433
No 268
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=58.22 E-value=59 Score=24.98 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..||.++....+-+.+|+.++.-++..+..|.
T Consensus 27 gslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 27 ETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34444555555555555555555555554443
No 269
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=57.90 E-value=51 Score=30.64 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 305 LQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 305 l~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+..++.+++.++.+...++.+|..
T Consensus 124 ~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 124 LNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433333
No 270
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=57.70 E-value=7.3 Score=31.76 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhcCCC
Q 018605 305 LQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 344 (353)
Q Consensus 305 l~~L~~e~~~L~~EN~~LkeeL~~L~g-~~~i~~L~~~~~~ 344 (353)
+..|+.++..|+.|...|+++|..|+. +..+.++...+++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~ 49 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILED 49 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecC
Confidence 344555555556666666666666665 4456666666654
No 271
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=57.70 E-value=14 Score=29.44 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
+.|+.++..|+.+...|..++..++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666543
No 272
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=57.60 E-value=5.7 Score=33.08 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 305 LQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 305 l~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
++.|..++.+|+.||..||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777778889999999988865
No 273
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=57.51 E-value=24 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
|..+++.|-.+...|..|..+|++-|
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 44445555445555555555555443
No 274
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=57.15 E-value=23 Score=28.01 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
-+|+..|+.++..+..+.. +...|+..|..|..++.+|.
T Consensus 38 vdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHH
Confidence 4566666554444333332 22556666777766666654
No 275
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=56.82 E-value=27 Score=34.84 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+++..||..+...+.+...|+..+..++.+++.|+.+...|..+|..
T Consensus 90 l~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 90 IEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666667777777777777777777777777777665544
No 276
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=56.43 E-value=20 Score=27.49 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+.+++..+++.|+.|-.-.-.+|..+.-.|+....++..|..+|..
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ 62 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVD 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444555555555555544445555555555555554444444443
No 277
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=56.43 E-value=16 Score=26.10 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
-..||.-|..|+..|..|.+.+..|...+..|+.
T Consensus 19 naklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777666666655543
No 278
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=56.31 E-value=13 Score=31.43 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+|..+++.|.+++..|+.|+..|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666665544
No 279
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=56.21 E-value=41 Score=30.51 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
+|+.++..|+.+|..|..++..|..+++++.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 280
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.10 E-value=8.9 Score=39.58 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+..+|+.++..++.+......++....+....|..+...+.++-..|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l 382 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEEL 382 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888777776666666555555555554444443333
No 281
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=56.07 E-value=1.1e+02 Score=27.14 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=8.7
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 018605 260 LKRQKRKQSNRESARRSR 277 (353)
Q Consensus 260 ~KR~RRk~~NRESARRSR 277 (353)
+.+++-+++.++++|.-+
T Consensus 32 le~ek~~l~~~e~~r~k~ 49 (169)
T 3k29_A 32 LELEQEKLRERESERDKV 49 (169)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555433
No 282
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=55.83 E-value=5 Score=37.21 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 018605 292 ETLSNENRNL 301 (353)
Q Consensus 292 ~~Le~EN~~L 301 (353)
+.|+.||..|
T Consensus 46 ~~l~~En~rL 55 (255)
T 2j5u_A 46 ADLKKENKDL 55 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 283
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=55.74 E-value=66 Score=29.68 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
.+..++..|+...+.++.|...++.++++.+.+..+||++-
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444443
No 284
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.69 E-value=40 Score=27.86 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
+++.|+.++..|+.........+..|-.+.+.|.
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 4445555555554444443333334433333333
No 285
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=55.65 E-value=39 Score=27.40 Aligned_cols=41 Identities=17% Similarity=0.393 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.+|+.+++.|+.+...| +.+..+...|+.+-..|..+|+.+
T Consensus 50 ~eL~~EI~~L~~eI~~L----E~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQL----EKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45666666666666543 223333445555555555555544
No 286
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=55.20 E-value=71 Score=24.75 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
..-+..+..|+.++..++.+.+....+.+.|-.-...|..|....|.-|+
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 44566778888888888888888888888888888888888888877665
No 287
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=55.18 E-value=1.2e+02 Score=27.71 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL 294 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~L 294 (353)
++...++-+.+..|+-|-+...++++.++.|..++...
T Consensus 99 ~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rk 136 (235)
T 2odv_A 99 EKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQME 136 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888889999999999998888887766643
No 288
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=55.07 E-value=30 Score=30.28 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVE 292 (353)
Q Consensus 278 ~RKq~~leeLE~rv~ 292 (353)
++|++++.+|..+..
T Consensus 22 ~~K~~~LqeL~~Q~v 36 (155)
T 2aze_A 22 KQKQSQLQELILQQI 36 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555655554433
No 289
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=55.00 E-value=27 Score=23.33 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+|..+++.|-.+...|..|..+|++-|.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3455555555555666666666665543
No 290
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=54.72 E-value=33 Score=22.62 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|++++..|++++..|.-....|++++..|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666677777777777776655
No 291
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=54.53 E-value=86 Score=25.47 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchh
Q 018605 309 SEECEKLTSENNSIKEDLSRLCGPEAV 335 (353)
Q Consensus 309 ~~e~~~L~~EN~~LkeeL~~L~g~~~i 335 (353)
+.+++.|+.|...|..+|....-...|
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~~~~~~ 92 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLRIQKET 92 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777766543333
No 292
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=54.48 E-value=21 Score=33.23 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
++++|.++..|+....++.+..+.....+..++.....|...
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555544444444444444444444434444333
No 293
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=54.43 E-value=26 Score=31.97 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQR 307 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~ 307 (353)
++++|..++..|.++...+|++..+
T Consensus 74 e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 74 KLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 294
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=54.30 E-value=12 Score=37.54 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.+++..||..+...+.....|+..+.....++..|+.....|..++.
T Consensus 90 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 90 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444455555555566666666666666666666655555555543
No 295
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=54.02 E-value=49 Score=23.66 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+.+.-+.....|.++|..|..++..-+.++..+.++|..
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555544
No 296
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=54.02 E-value=6.8 Score=28.62 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLR 302 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~ 302 (353)
..++++||.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888887777665553
No 297
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=53.66 E-value=24 Score=31.80 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e 311 (353)
.++..|+++|..|++|.++|.++
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555554443
No 298
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=53.61 E-value=19 Score=23.04 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNL 301 (353)
Q Consensus 287 LE~rv~~Le~EN~~L 301 (353)
||.+...|+...+.|
T Consensus 6 lekkcaalesklqal 20 (31)
T 3ljm_A 6 LEKKCAALESKLQAL 20 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 299
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=53.19 E-value=42 Score=26.12 Aligned_cols=32 Identities=13% Similarity=0.319 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..|..+++.+..++..|..+...|..++..+.
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666654
No 300
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=52.97 E-value=50 Score=29.17 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018605 297 ENRNLRDELQRLSEECE 313 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~ 313 (353)
....|.+|+..|+.++.
T Consensus 114 kI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 114 KINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 301
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=52.74 E-value=76 Score=24.36 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 340 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~ 340 (353)
+|..++..-+.|...|..-+..|+.++.+...=|..|..++.-++ ..+.+|+-
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q--~s~~~l~k 59 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQ--IKISDLEK 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHh
Confidence 445555555555555555555555555555555555555554443 33444433
No 302
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=52.60 E-value=23 Score=35.13 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 309 SEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 309 ~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
..+...|..+...|.+++..+. +.+..+...+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 107 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVE--EELKNTLLWIPN 107 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 4445555555555666655555 444544444444
No 303
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=52.02 E-value=12 Score=30.37 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 292 ETLSNENRNLRDELQRLSEECEK 314 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~ 314 (353)
.+|+.+...|++++..|+++++.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~ 32 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVAR 32 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 304
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=51.88 E-value=22 Score=29.99 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L 308 (353)
.|+.+++.|+.....|+.++..+
T Consensus 109 ~l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 109 EYDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 305
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=51.86 E-value=85 Score=24.63 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..|..+++.+..++..|..+...|..++..+.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777777777777665
No 306
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=51.73 E-value=88 Score=25.25 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.+.-|+.+++..+..-..=|.--+++..+.+.|..++..|..++..|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 556666666666665554444444445555555555555554444443
No 307
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=51.55 E-value=64 Score=23.09 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
+-.+.|-.+|..|+..+.++.+|+.+|+.
T Consensus 11 e~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 11 QINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 33466777777777777777777777643
No 308
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=51.49 E-value=1.4e+02 Score=28.21 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHH------H----------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 272 SARRSRLRKQAECEELQA------R----------VETLS---NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 272 SARRSR~RKq~~leeLE~------r----------v~~Le---~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
++++++.+=...+++++. + ...|+ ..-++|+.+++.....+.....+-..++.+|.... +
T Consensus 134 ~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk-~ 212 (279)
T 3qwe_A 134 ALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAK-Q 212 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-H
Confidence 567777777777888774 1 01122 22344778888888888888888888888887764 6
Q ss_pred chhhhhhh
Q 018605 333 EAVANLEQ 340 (353)
Q Consensus 333 ~~i~~L~~ 340 (353)
..|+.|..
T Consensus 213 ~~v~~Lr~ 220 (279)
T 3qwe_A 213 RIVSHVRK 220 (279)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 309
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=51.40 E-value=64 Score=24.85 Aligned_cols=46 Identities=22% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
+..+..|+.++..++.+......+.+.|-.-...|..|....|.-|
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666665544
No 310
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.14 E-value=21 Score=35.37 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhhhcCCC
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP-EAVANLEQSNPT 344 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~-~~i~~L~~~~~~ 344 (353)
+.+++++.++..+..... +|+.+...|..+...|++++..|+.. ..|..+...+++
T Consensus 25 ~~i~~~~~~~~~~~~~~~-------~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~ 81 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVR-------RLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSD 81 (405)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecC
Confidence 344555555544444333 44444455556666667777777653 345555555544
No 311
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.82 E-value=32 Score=23.99 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
+|-++++....|.+.-+.+|..|+.+...|
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 312
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=50.60 E-value=1e+02 Score=31.26 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=18.9
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 309 SEE-CEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 309 ~~e-~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
..+ ...|..+...|.+++..+. +.+..+...+|.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~--~~~~~~l~~iPN 143 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLE--EERDKLMLNVGN 143 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 444 5556666666666666665 445455555444
No 313
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=50.58 E-value=60 Score=25.63 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Q 018605 283 ECEELQARVETLSNENRNL--R-DELQRLSEECEKLTSENNS-IKEDLSRLC 330 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L--~-~el~~L~~e~~~L~~EN~~-LkeeL~~L~ 330 (353)
.+++++.-|.+++-|...+ - ..-..+..++...+.+... |+.+|..|.
T Consensus 42 ~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 42 QQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444445555554444 1 1123445566666677777 777777664
No 314
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=50.01 E-value=52 Score=26.81 Aligned_cols=40 Identities=13% Similarity=0.319 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
+.|+++++.|+.....|...+..++.++..+..+.+++..
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666666666666666666655555543
No 315
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=49.95 E-value=75 Score=25.61 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSE 318 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~E 318 (353)
|+.++..|.++++.|..+
T Consensus 54 L~Rk~DKl~~ele~l~~~ 71 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDE 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444443333333333
No 316
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=49.93 E-value=59 Score=27.14 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
|+.+++.|+.+...|...+..|...+.
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444433333333333333
No 317
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=49.74 E-value=45 Score=27.36 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
+.|.+|..++..|+.|--.|..++..-.-++..|......|
T Consensus 49 e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 49 DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 55666666777777777777777776666777776666655
No 318
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=49.14 E-value=77 Score=23.34 Aligned_cols=43 Identities=33% Similarity=0.291 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 259 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 259 e~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el 305 (353)
|.||-|-+..-|.+-.++|.-=+-+.+-...+. .||..|+--+
T Consensus 3 e~kryknr~asrk~rakfkn~lqh~r~vaaaks----~en~rlr~l~ 45 (63)
T 2c9l_Y 3 EIKRYKNRVAARKSRAKFKQLLQHYREVAAAKS----SENDRLRLLL 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccchHHHHHH
Confidence 567888888888888889888777777766643 4666665443
No 319
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=48.91 E-value=1.1e+02 Score=24.92 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 294 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
|+.+...=..+|..|+..+..+..++..|..+|..|.
T Consensus 59 lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 59 LKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444455555555555555555554443
No 320
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=48.86 E-value=51 Score=31.94 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLR 302 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~ 302 (353)
+++++|+.+++.|+.+...|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666664
No 321
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.85 E-value=51 Score=25.50 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 282 AECEELQARVETLSNENRN------LRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~------L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|+.|+.++..|+.+... =..++..|..++..+..++..+.++=..|
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888888888877643 13466667777777777777776554443
No 322
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=48.74 E-value=67 Score=29.24 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018605 277 RLRKQAECEELQARVETLS 295 (353)
Q Consensus 277 R~RKq~~leeLE~rv~~Le 295 (353)
|.+|+--.+....+++.|+
T Consensus 139 R~~KllDYD~~~~k~~kL~ 157 (243)
T 4a3a_A 139 RSRKLVDYDSARHHLEALQ 157 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHH
Confidence 4445544555555555554
No 323
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=48.64 E-value=1.3e+02 Score=26.01 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
.|..|+.++..|..++..-+.++..+.
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~ 125 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAIS 125 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 324
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.39 E-value=39 Score=23.53 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 300 NLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 300 ~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+|.+++.++-.+++..+.+...|+.++..|.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666777777777766666664
No 325
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.03 E-value=19 Score=35.67 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 288 QARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
.+.+..|+.+...|..++..+++++.
T Consensus 38 ~~~~~~l~~~~~~l~~~~~~~~~e~~ 63 (405)
T 4b4t_J 38 TENVRRLEAQRNALNDKVRFIKDELR 63 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544443
No 326
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=48.00 E-value=96 Score=28.43 Aligned_cols=24 Identities=4% Similarity=0.079 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 305 LQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 305 l~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+..++.++..++.+...++.+|..
T Consensus 123 ~~~~~a~l~~~~a~l~~a~a~l~~ 146 (341)
T 3fpp_A 123 MAVKQAQIGTIDAQIKRNQASLDT 146 (341)
T ss_dssp HHHTHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443
No 327
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.89 E-value=99 Score=24.26 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 279 RKQAECEELQARVETLSN-------------------ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~-------------------EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+-+.+++.|+..+..|+. .......++..++.++..|..+...|..++..|.
T Consensus 28 ~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 28 ELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666543 2334556666666677777777777766666665
No 328
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.51 E-value=39 Score=28.41 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L 308 (353)
+++..|+.||.....++...
T Consensus 92 ~ri~~L~~E~~~~~~el~~~ 111 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEA 111 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444333
No 329
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.38 E-value=37 Score=29.29 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e 311 (353)
+++..|+.||.....++...-++
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~e 114 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKK 114 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555444444333
No 330
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=47.33 E-value=54 Score=33.58 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
+.+++.+-+.+++||..++++....+..++
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye 65 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYE 65 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666655555544433
No 331
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=47.08 E-value=28 Score=33.64 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
|+.+++.|++++..|+.+...|+..|
T Consensus 33 Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 33 MKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444433
No 332
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=47.01 E-value=34 Score=21.85 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 307 RLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 307 ~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.|..+|..|++..+.|..+|+.|.
T Consensus 5 alekkcaalesklqalekkleale 28 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555543
No 333
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.82 E-value=1.3e+02 Score=30.00 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhHH
Q 018605 257 ERELKRQKRKQSNRE 271 (353)
Q Consensus 257 Ere~KR~RRk~~NRE 271 (353)
|++++....+++|+.
T Consensus 62 er~~~~rIe~L~~~L 76 (390)
T 1deq_A 62 DQDFTSRINKLRDSL 76 (390)
T ss_pred hhhHHHHHHHHHHHH
Confidence 455555555555554
No 334
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=46.79 E-value=40 Score=31.75 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
++|+..+..+..+...|..++..|++++..|..+
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444444444444444444433
No 335
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=46.33 E-value=67 Score=28.40 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.|+..+......|..|-.++..|+-++.+|...-......|...
T Consensus 113 ~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~ 157 (170)
T 3l4q_C 113 TKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK 157 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHc
Confidence 344555555556666666777777777777766666666665543
No 336
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=46.19 E-value=95 Score=28.80 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=10.9
Q ss_pred HHHHHHhHHHH-HHHHHHHHH
Q 018605 263 QKRKQSNRESA-RRSRLRKQA 282 (353)
Q Consensus 263 ~RRk~~NRESA-RRSR~RKq~ 282 (353)
.=+-++|||.. +.+|.||+.
T Consensus 95 ~LK~IR~~E~svqp~R~~R~~ 115 (234)
T 3plt_A 95 TLKSIRNIEASVQPSRDRKEK 115 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 33556777754 455555443
No 337
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.96 E-value=7.8 Score=27.78 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
|..+|.-.-.||..|..-+.+|...+..|+.....|...|.
T Consensus 8 lknrvayklkenaklenivarlendnanlekdianlekdia 48 (56)
T 3he4_A 8 LKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIA 48 (56)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33333333346776666666655555555444444444333
No 338
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=45.92 E-value=1.3e+02 Score=25.01 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
.+.|+.....|..++..|+.....|..
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333
No 339
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=45.61 E-value=51 Score=28.09 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcC
Q 018605 293 TLSNENRNLRDELQRLSEE-------CEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e-------~~~L~~EN~~LkeeL~~L~g 331 (353)
.|+..+.+|...|..|.++ ...-.-|...|+.++.+|+|
T Consensus 62 ~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 3444444444444444433 23334567777777777766
No 340
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=45.49 E-value=37 Score=26.50 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCchhhhhhhcC
Q 018605 321 SIKEDLSRLCGPEAVANLEQSN 342 (353)
Q Consensus 321 ~LkeeL~~L~g~~~i~~L~~~~ 342 (353)
.|.-+|++|+..+....+..++
T Consensus 44 sLQvqLE~IRqadt~~qvr~Il 65 (79)
T 1tu3_F 44 TLQVQLERIRQADSLERIRAIL 65 (79)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHH
Confidence 4555566665555444444433
No 341
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=45.46 E-value=1.2e+02 Score=24.48 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 271 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 271 ESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
++-+-||.-=-...++|+.-+..|+.+|..-...+..|+..+.
T Consensus 14 e~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akid 56 (101)
T 1d7m_A 14 ESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455444444467777777777777776666666655544
No 342
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=45.23 E-value=63 Score=24.43 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018605 306 QRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 306 ~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
..|++++.+|..|...|...|.
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555554443
No 343
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=45.08 E-value=69 Score=30.05 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
+.+|+.+++.|+.+...+..++..+..+
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 344
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=44.77 E-value=53 Score=27.38 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
+++.+|+.+|+.++..++.|++-....
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~k 30 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTK 30 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777666666666554433
No 345
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=44.63 E-value=63 Score=24.96 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 018605 282 AECEELQARV 291 (353)
Q Consensus 282 ~~leeLE~rv 291 (353)
.++..|+..+
T Consensus 32 ~eI~~L~e~i 41 (75)
T 3a7o_A 32 QEIRRLKEVI 41 (75)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 346
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=44.29 E-value=1.3e+02 Score=24.46 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+...++.|..++..-..+...|+..++.+......|...+..|..+...|..
T Consensus 51 eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 51 EQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777777778888888888777777777777777666653
No 347
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=44.17 E-value=49 Score=30.72 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++.|-.+|+.++.....|..++..+.+..+..+.....|.+.|.+|.
T Consensus 1 le~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 1 MASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777766666666666766666664
No 348
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=43.91 E-value=42 Score=22.37 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 304 ELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 304 el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
.-..|..+.+.|+..+..|+.+|+.|
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444455555555555555544
No 349
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=43.83 E-value=40 Score=22.77 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQ 306 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~ 306 (353)
|...++.-..|...|+.+..
T Consensus 12 Lhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 33333333333333333333
No 350
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=43.73 E-value=89 Score=26.58 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
++.|.+|..++..|+.|--.|..++..-.-++..|......|+...
T Consensus 64 ~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKf 109 (133)
T 1j1d_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHccc
Confidence 4667777788888888888888888888888888888887776543
No 351
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.70 E-value=26 Score=30.09 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018605 311 ECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 311 e~~~L~~EN~~LkeeL~~L 329 (353)
+...++..|..|+++|..-
T Consensus 97 ~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555443
No 352
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=43.63 E-value=43 Score=31.84 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEEC 312 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~ 312 (353)
.++++.|+.+.+.|+.|.++|..++..++...
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n 215 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN 215 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 46788888888888888888887777776653
No 353
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=43.62 E-value=37 Score=29.49 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
+..||+++..|+.....+..+|..|+.+++.|+.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666666666666666666666555555553
No 354
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=43.58 E-value=37 Score=30.51 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el 305 (353)
-..+.+|+.+.+.|+.||+.|..+-
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777777777777777776653
No 355
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=43.24 E-value=1.6e+02 Score=25.19 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=40.3
Q ss_pred HHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 262 RQKRKQSNRESARRSRLRKQ---------------AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 262 R~RRk~~NRESARRSR~RKq---------------~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
|.++.+-||.-.---|..-. ...++..+++..++.+......++......|..|..++..+-..|
T Consensus 38 R~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 38 RGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777776655554322 123444555556666666666666666666666666666666555
Q ss_pred HHhc
Q 018605 327 SRLC 330 (353)
Q Consensus 327 ~~L~ 330 (353)
..|.
T Consensus 118 KsLE 121 (147)
T 2b9c_A 118 KSLE 121 (147)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 5554
No 356
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=43.20 E-value=11 Score=36.32 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018605 302 RDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 302 ~~el~~L~~e~~~L~~EN~~Lk 323 (353)
..++..|+..++.|+.+...|+
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~ 38 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLK 38 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 357
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=43.05 E-value=1.1e+02 Score=25.05 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
--+++...++++..-..|-.++..++..|-.++--|+.|..+|+.-+.
T Consensus 60 h~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 60 HSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445677777777777777777778888888888888888888876554
No 358
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.51 E-value=39 Score=22.99 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018605 294 LSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 294 Le~EN~~L~~el~~L~~e~~~L 315 (353)
.+.+...|..++..|+++.++|
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554444
No 359
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=42.49 E-value=43 Score=29.73 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
..|+..+..|.++...|..+...|++
T Consensus 59 ~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 59 NHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 360
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=42.49 E-value=53 Score=24.96 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETL 294 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~L 294 (353)
|+.+|+....++.|+.|.|=...+++|..-|-..
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~ 38 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 38 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 4566777777888888888888888888776654
No 361
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=42.26 E-value=52 Score=26.98 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q 018605 293 TLSNENRNLRDELQRLSEECEKL-------TSENNSIKEDLSRL 329 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L-------~~EN~~LkeeL~~L 329 (353)
.|+..+.+|...|..|.++--.| .-|...|+.++.+|
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444443333 34445555555554
No 362
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=42.23 E-value=1.4e+02 Score=27.72 Aligned_cols=50 Identities=12% Similarity=0.327 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNENR----NLRDE-LQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~----~L~~e-l~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.++.++++.++..|..-.- .++++ ++..++.+..|+.|+..-+.+|...+
T Consensus 37 MkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH 91 (239)
T 3k66_A 37 MKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVH 91 (239)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4556777777777766442 23332 34456666777777777777776665
No 363
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=42.21 E-value=59 Score=30.21 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
..+.+...++.++..++.++..++.+...++.+|..
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555566666666666666666666666544
No 364
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=41.83 E-value=78 Score=25.47 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 336 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~ 336 (353)
-+.|+-.+|..++...- -..+|..|..++.+|..|-..+..+|..|-|++-.+
T Consensus 33 vikEIs~Kv~~Iqn~~L-~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY~~ 85 (92)
T 1x4t_A 33 IIGEISKKVAQIQNAGL-GEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGK 85 (92)
T ss_dssp HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTT
T ss_pred HHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 34555556655544211 123777888888999999999999999999887544
No 365
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=41.53 E-value=1.3e+02 Score=24.17 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 018605 311 ECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 311 e~~~L~~EN~~LkeeL~~L~ 330 (353)
++..+......|+.++..+.
T Consensus 63 ~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 63 QIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 366
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=41.53 E-value=72 Score=30.21 Aligned_cols=51 Identities=12% Similarity=0.295 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 276 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 276 SR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
...--..++.+|..+|..++.+-.++.+.++.+.+.+..|+.|..+++..|
T Consensus 210 an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (268)
T 2yo3_A 210 ANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLI 260 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344456677888888888888888888888888888888888887776544
No 367
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.43 E-value=85 Score=21.62 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLR 302 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~ 302 (353)
+|..-++.|+..|.+|+
T Consensus 7 elknyiqeleernaelk 23 (46)
T 3he4_B 7 ELKNYIQELEERNAELK 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 44444444455554443
No 368
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=41.08 E-value=78 Score=33.03 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+..+..|+.+...++.+++.++.+.++|+.....++++|.++
T Consensus 351 ~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~ 392 (695)
T 2j69_A 351 ARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINT 392 (695)
T ss_dssp HHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555444444444444444433
No 369
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.93 E-value=27 Score=34.81 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
|..++..+++++..|+.+...++++|+.|+.
T Consensus 70 ~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 100 (437)
T 4b4t_L 70 YDDQLKQRRQNIRDLEKLYDKTENDIKALQS 100 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444444444455555555556666653
No 370
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=40.48 E-value=2e+02 Score=25.69 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 256 DERELKRQKRKQSNRESARRSRLRKQAEC-EELQARVETLSNENRNLRDEL---QRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 256 DEre~KR~RRk~~NRESARRSR~RKq~~l-eeLE~rv~~Le~EN~~L~~el---~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
++.-+-++--++-|+.+....|..|-.++ +....-+..-+.-+..|...+ ......++.|+....++..+|..|..
T Consensus 66 G~~SlTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P 145 (201)
T 3u0c_A 66 GEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDP 145 (201)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333455555666666666666666555 111222222223333333333 33455667777777777777777754
Q ss_pred C
Q 018605 332 P 332 (353)
Q Consensus 332 ~ 332 (353)
.
T Consensus 146 ~ 146 (201)
T 3u0c_A 146 E 146 (201)
T ss_dssp S
T ss_pred C
Confidence 3
No 371
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=40.18 E-value=1.1e+02 Score=24.46 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEK----LTSENNSIKEDLSRLC 330 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~----L~~EN~~LkeeL~~L~ 330 (353)
+.|.++..--.|.+.++..|-.|.....+ .+.|..+||.+|+..-
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444455555555444333 3467778888777543
No 372
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=39.88 E-value=6.1 Score=32.06 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
.+..|.-.|++++..|..+++.++.||..||+
T Consensus 40 ~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke 71 (95)
T 3n7n_E 40 KVVDETLFLQRQIAQLNKQLQLSFQENEKLLS 71 (95)
T ss_dssp --------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777664
No 373
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.85 E-value=29 Score=34.61 Aligned_cols=33 Identities=6% Similarity=0.218 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
.++|+.++..++. ++..|+++...++.|+..|+
T Consensus 67 ~~~~e~~~~~~~~-------~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 67 HRRYDDQLKQRRQ-------NIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Confidence 3445555544444 44445555555555555554
No 374
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=39.69 E-value=54 Score=25.75 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+++.+|...|+.|+.|-.-.-.+|..+.--|+....++..|..+|..
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ 54 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIG 54 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 34566666666666666666666666655555554444444444443
No 375
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=38.96 E-value=1.8e+02 Score=25.24 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 018605 304 ELQRLSEECEKLTSENNSIKEDLSRLCGPEAV 335 (353)
Q Consensus 304 el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i 335 (353)
.+..+..++..|+.++..|..++..|.....|
T Consensus 81 akk~~ea~la~l~~~~~~LeAE~aKLeEekQI 112 (146)
T 2xnx_M 81 LLGNAKLELDQLSSEKEQLTIEKAKLEEEKQI 112 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33344444555555555566666665443333
No 376
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=38.80 E-value=51 Score=26.76 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
.|+.+++.|+.+-..|-..+..+++.+..|.
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444443
No 377
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=38.61 E-value=40 Score=23.47 Aligned_cols=15 Identities=7% Similarity=0.319 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 018605 295 SNENRNLRDELQRLS 309 (353)
Q Consensus 295 e~EN~~L~~el~~L~ 309 (353)
......|.++|..|.
T Consensus 15 ~~r~e~LE~Ri~~LE 29 (43)
T 2pnv_A 15 NERSEDFEKRIVTLE 29 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 333333444443333
No 378
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=38.53 E-value=1.4e+02 Score=25.83 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENR 299 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~ 299 (353)
+|..|+-+...+..|..
T Consensus 44 elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 44 QLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455544444444433
No 379
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.24 E-value=46 Score=25.27 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHh
Q 018605 316 TSENNSIKEDLSRL 329 (353)
Q Consensus 316 ~~EN~~LkeeL~~L 329 (353)
..|+..|+.+|.++
T Consensus 38 d~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 38 EEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 380
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=37.94 E-value=1.2e+02 Score=22.29 Aligned_cols=41 Identities=15% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
.|..+|..|+.||..|.+-++.=+.....|+.=...+-..+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 381
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=37.92 E-value=53 Score=29.25 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDEL 305 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el 305 (353)
.+.+.+++.||.++...+.++..+..++
T Consensus 138 ~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 138 AKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 382
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=37.69 E-value=1.1e+02 Score=27.27 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhcC
Q 018605 316 TSENNSIKEDLSRLCG 331 (353)
Q Consensus 316 ~~EN~~LkeeL~~L~g 331 (353)
.-|...|+.++..|+|
T Consensus 92 dyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 92 ITEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHHh
Confidence 3455666666666655
No 383
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=37.57 E-value=1.5e+02 Score=23.47 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
..|++.|.+++..++..+.-..+|.-|+..+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455556666666666666555555555443
No 384
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=37.42 E-value=84 Score=24.51 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcCCchhhhhhhc
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK-----EDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk-----eeL~~L~g~~~i~~L~~~ 341 (353)
.+.+|..+|..|+.|...-..=-...-+-++.|..++..|| +++..+-+...++++.+.
T Consensus 13 ~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqadt~~qvr~Il~e~~l~di~~~ 76 (79)
T 1tu3_F 13 LMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDINQL 76 (79)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHccCccchHhhC
Confidence 34455555555555443322222222333456667777775 477777777777776554
No 385
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=37.39 E-value=85 Score=27.43 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 293 TLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 293 ~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
.|+.|...++.+|+.-++++++|..+...|
T Consensus 9 ~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 9 NLEVERQRRLERIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433333
No 386
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=37.21 E-value=51 Score=26.57 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=11.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHH
Q 018605 285 EELQARVE-TLSNENRNLRDELQ 306 (353)
Q Consensus 285 eeLE~rv~-~Le~EN~~L~~el~ 306 (353)
.+|+.+|+ .|...+..|.+++.
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555 55555555555444
No 387
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=37.15 E-value=1.1e+02 Score=24.76 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 319 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN 319 (353)
.++-.+|..++..-+.....-+..+..|++.++.|+.|.
T Consensus 56 lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 56 LAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666666666666666655555555543
No 388
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=36.90 E-value=7.2 Score=29.72 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNEN---------------------RNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 284 leeLE~rv~~Le~EN---------------------~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
+..||.++.+|+.|. +.|+.++..|+=+++.|...|.+|+.+|.
T Consensus 15 lqalekelaqlekelqawncicdiencsnmaplysdqalkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 15 LQALEKELAQLEKELQAWNCICDIENCSNMAPLYSDQALKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp THHHHTTHHHHHHHHTTTCSSCCCCCCCSSCCCCCSTTTHHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 445666666666664 34778888888888888888888887764
No 389
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=36.47 E-value=1.3e+02 Score=24.29 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018605 308 LSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 308 L~~e~~~L~~EN~~LkeeL 326 (353)
|++++.+|..|...|...|
T Consensus 54 L~Rk~DKl~~ele~l~~~l 72 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEI 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 390
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=36.26 E-value=21 Score=29.45 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNE 297 (353)
Q Consensus 282 ~~leeLE~rv~~Le~E 297 (353)
+|+..|+.+++.|+.+
T Consensus 74 eYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 74 DYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666555543
No 391
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=36.21 E-value=93 Score=27.55 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
++|..-...|+.+...|..+...|..++..|..+...+.+.+
T Consensus 52 ~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 52 EIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666666555544433
No 392
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=35.88 E-value=81 Score=28.19 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
++.|.+|..++..|+.|--.|..++..-.-++..|......|+.
T Consensus 64 ~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHh
Confidence 46677777788888888777777777777777777777777754
No 393
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.65 E-value=1.6e+02 Score=23.28 Aligned_cols=48 Identities=8% Similarity=0.123 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 279 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 279 RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
.-+..+..|+.++..++.+.+....+...|-.-...|..|....+.-|
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888777777777777777888877776654
No 394
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=35.35 E-value=39 Score=31.49 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 254 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 302 (353)
Q Consensus 254 ~~DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~ 302 (353)
...-+++.+.+.+++-+..+.-+..-|++++.+|+.++..|+.+...|.
T Consensus 263 y~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (321)
T 3p7i_A 263 LVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALS 311 (321)
T ss_dssp GHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555544444444444555566666666666666665554443
No 395
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=35.19 E-value=1.4e+02 Score=26.70 Aligned_cols=54 Identities=13% Similarity=-0.023 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 337 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~ 337 (353)
..-|+.+.+.|..|-..|..++..++++...+..+-...-.......|...+..
T Consensus 33 ~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~ 86 (217)
T 3aon_A 33 HKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDE 86 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 355677777777777777777777777777777666666666665556544443
No 396
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=35.13 E-value=1.4e+02 Score=22.30 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 288 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 288 E~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..-|=.|+.|..+|+.+...++.-++.-...+..|..-|.++.
T Consensus 6 VDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~ 48 (61)
T 3l4f_A 6 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666666666655555543
No 397
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=35.05 E-value=2.2e+02 Score=24.61 Aligned_cols=9 Identities=11% Similarity=0.424 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 018605 302 RDELQRLSE 310 (353)
Q Consensus 302 ~~el~~L~~ 310 (353)
...|..|..
T Consensus 104 Ek~id~lEd 112 (155)
T 2efr_A 104 EKSIDDLED 112 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 398
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.93 E-value=94 Score=25.99 Aligned_cols=41 Identities=10% Similarity=0.259 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lkee 325 (353)
+.|+.+++.|+.....|...+..++.++..+.....+|...
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777766666666555543
No 399
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.72 E-value=1.5e+02 Score=31.39 Aligned_cols=17 Identities=24% Similarity=0.263 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNE 297 (353)
Q Consensus 281 q~~leeLE~rv~~Le~E 297 (353)
-..+++|++++..|+.+
T Consensus 400 p~~l~~~~~~~~~~~~~ 416 (854)
T 1qvr_A 400 PEEIDALERKKLQLEIE 416 (854)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 45566666666555544
No 400
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=34.71 E-value=1.2e+02 Score=24.53 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018605 304 ELQRLSEECEKLTSENN 320 (353)
Q Consensus 304 el~~L~~e~~~L~~EN~ 320 (353)
+++.|+.++..|..++.
T Consensus 68 ~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 68 RIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 401
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.64 E-value=90 Score=24.04 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc
Q 018605 312 CEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 312 ~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
+..-..++..|+.+|..+.+.+
T Consensus 42 i~~aV~~Ll~LKa~l~~~tg~~ 63 (79)
T 2djv_A 42 VAAEVAKLLDLKKQLAVAEGKP 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHHHHHHhcCCC
Confidence 3444555677777777776643
No 402
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=33.81 E-value=1.8e+02 Score=23.07 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 018605 308 LSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 308 L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+..++...+.+...|+.++..+.
T Consensus 72 ~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 72 YSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544
No 403
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=33.78 E-value=24 Score=28.65 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le---~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
..|+..+++|..++..++ ..+..|+.++...+..+..-+..-..|.
T Consensus 34 ~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~ 82 (96)
T 3fx0_A 34 VAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLA 82 (96)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666665 4455566666666666665555444443
No 404
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=33.74 E-value=45 Score=25.47 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.+|..+|..|+....... ++..|+.+-..|+.|...|.....
T Consensus 27 ~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~ 68 (76)
T 1zhc_A 27 NQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYR 68 (76)
T ss_dssp HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445555555544332222 566666666666666555544433
No 405
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=33.57 E-value=97 Score=25.09 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
++..|+.|...|..+-..|-+.+..+....+.|
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333333
No 406
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.30 E-value=1.7e+02 Score=22.69 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 338 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L 338 (353)
+..++.|...-..|..+...++..+..++.+++.-..-...+...+..|+..-+-.+|
T Consensus 6 r~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l 63 (86)
T 3swk_A 6 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASL 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
No 407
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=33.11 E-value=2.4e+02 Score=24.41 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 299 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
..|+..+...+.....+..+...|+.++..|.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~Le 100 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLT 100 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 33444444445555555555555555555554
No 408
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=32.79 E-value=53 Score=21.25 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 018605 308 LSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 308 L~~e~~~L~~EN~~LkeeL~~L 329 (353)
|+...+.|+..|-..++++..|
T Consensus 6 lkkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 6 LKKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3333344444444444444443
No 409
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=32.71 E-value=91 Score=26.24 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=4.6
Q ss_pred HHHHHHHhHHH
Q 018605 262 RQKRKQSNRES 272 (353)
Q Consensus 262 R~RRk~~NRES 272 (353)
.+-.++.||.=
T Consensus 10 ~Eiq~L~drLD 20 (123)
T 2lf0_A 10 NEIKRLSDRLD 20 (123)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 410
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=32.52 E-value=28 Score=29.67 Aligned_cols=8 Identities=50% Similarity=1.111 Sum_probs=4.1
Q ss_pred CCCCCCcc
Q 018605 199 SVPGKPVV 206 (353)
Q Consensus 199 ~~~g~~~~ 206 (353)
.+.|.||.
T Consensus 33 ~v~GrpV~ 40 (140)
T 3iyn_Q 33 SIDGRPVL 40 (140)
T ss_dssp CTTCSSCC
T ss_pred CCCCCccC
Confidence 35555553
No 411
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=31.97 E-value=38 Score=27.37 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 018605 301 LRDELQRLSEE 311 (353)
Q Consensus 301 L~~el~~L~~e 311 (353)
|+.++..|.++
T Consensus 61 L~Rk~DKl~~e 71 (94)
T 3vlc_E 61 NNRKLDSLDKE 71 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 412
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.87 E-value=25 Score=25.94 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSNENRNL 301 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L 301 (353)
+..+++.|+.+|..||.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888877665554
No 413
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=31.65 E-value=1.5e+02 Score=23.13 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+++|+..--...++|..|..++...+.++..+..+|...
T Consensus 32 ~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqT 70 (77)
T 3mtu_E 32 LQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQT 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 414
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=31.47 E-value=1.8e+02 Score=22.34 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 303 DELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 303 ~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.+|-.+.+++-..-.+...++.+|..|.
T Consensus 38 ~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 38 NRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666677777777664
No 415
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=31.32 E-value=54 Score=26.48 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNEN 298 (353)
Q Consensus 285 eeLE~rv~~Le~EN 298 (353)
..|+.+++.|+.+.
T Consensus 7 ~~l~~~~~~l~~~l 20 (149)
T 1rtm_1 7 ANMEAEINTLKSKL 20 (149)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 416
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=30.82 E-value=1.1e+02 Score=23.02 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 302 RDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 302 ~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
......+......+..-+..+...|....
T Consensus 54 ~~~~~~~~~~~~~~~~~L~~i~~~L~~~a 82 (98)
T 3gwk_C 54 EAQFNELSPKITEFAQLLEDINQQLLKVA 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555443
No 417
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=30.62 E-value=2.2e+02 Score=27.38 Aligned_cols=11 Identities=55% Similarity=0.595 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 018605 285 EELQARVETLS 295 (353)
Q Consensus 285 eeLE~rv~~Le 295 (353)
+.|+.+.+.+.
T Consensus 227 e~L~~ere~~~ 237 (302)
T 3ibp_A 227 ESLHAEREVLS 237 (302)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 418
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=30.52 E-value=2.1e+02 Score=25.58 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
.+.+++.-++++ -|+.+.+.|+++|.
T Consensus 224 v~~~~~k~Qrey-~LrEQlk~IqkELG 249 (252)
T 3ljc_A 224 VKKQMEKSQREY-YLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence 344444443333 35555666666654
No 419
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=30.19 E-value=2.3e+02 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEK 314 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 314 (353)
+.|-.++..+..++..|+.++..+-++...
T Consensus 41 d~L~~ef~~i~~~~~~~r~~~~~~~~~a~~ 70 (217)
T 3aon_A 41 DELMRQFILLIRKNNELRQAIEKETQTAMK 70 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777776554433
No 420
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=30.13 E-value=2e+02 Score=22.54 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
-++.|+.-++.|..-..+-+.+....+.+...-......+++.|..
T Consensus 25 ~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666655555555555555555555544
No 421
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=30.00 E-value=84 Score=33.98 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=18.3
Q ss_pred CchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCcccc
Q 018605 29 ADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWG 64 (353)
Q Consensus 29 pdW~~smQAYy~~~~~pp~y~~s~va~~~phPYmWg 64 (353)
.||.=|=|-|.|- +.|-||... ..+.|+|-
T Consensus 398 ~DW~ISRqr~WG~--pIP~w~~~~----~~~i~v~~ 427 (862)
T 1gax_A 398 KDWNISRQLWWGH--QIPAWYCED----CQAVNVPR 427 (862)
T ss_dssp CCCCCBCCCSSSC--CCCCEEETT----TCCEECCC
T ss_pred cceeEecccCCCc--ccCceecCC----CCEEEEec
Confidence 6887555988873 446666541 12456764
No 422
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.92 E-value=1.7e+02 Score=23.55 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLS 295 (353)
Q Consensus 281 q~~leeLE~rv~~Le 295 (353)
+.++.+|+.++..|+
T Consensus 53 ~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 53 EEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555554443
No 423
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=29.50 E-value=2.9e+02 Score=24.53 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 297 ENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 297 EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
+......++..++..+..+..|...++.
T Consensus 131 ~~~~~~~~l~KaK~~Y~~~~~e~e~a~~ 158 (305)
T 2efl_A 131 HIETCWKQLESSKRRFERDCKEADRAQQ 158 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 424
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=29.28 E-value=1.7e+02 Score=26.40 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 321 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~ 321 (353)
.-|+.+.+.|..|-..|..++..+++++..+..+-..
T Consensus 26 ~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~ 62 (223)
T 3a5c_G 26 DLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYA 62 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555444444333
No 425
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.17 E-value=2.4e+02 Score=23.19 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 018605 314 KLTSENNSIKEDL 326 (353)
Q Consensus 314 ~L~~EN~~LkeeL 326 (353)
.|+....+|+.+|
T Consensus 86 alq~KiaeLKrqL 98 (107)
T 2k48_A 86 TLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 426
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=28.87 E-value=74 Score=30.62 Aligned_cols=8 Identities=50% Similarity=0.941 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 018605 301 LRDELQRL 308 (353)
Q Consensus 301 L~~el~~L 308 (353)
|+++|..|
T Consensus 40 L~~KI~~L 47 (323)
T 1lwu_B 40 LRAKMQRM 47 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 427
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=28.80 E-value=23 Score=24.95 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 303 DELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 303 ~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+|+.+.+..+.+..++..|+.++..
T Consensus 6 rELeEa~Erae~ae~~vnkLR~k~R~ 31 (45)
T 3zwh_Q 6 RELEDATETADAMNREVSSLKNKLRR 31 (45)
T ss_dssp SHHHHHTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555555555555555543
No 428
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=28.80 E-value=33 Score=32.89 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 256 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL 294 (353)
Q Consensus 256 DEre~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~L 294 (353)
|+...|...++...+++.||.|.|=-.++.+|..-|-.-
T Consensus 4 ~~~~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~ 42 (387)
T 4f3l_B 4 AEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 42 (387)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccccchhhhhcccccchhhcchHHHHHHHHHHHHhcCCC
Confidence 334445555677778889999999999999999877653
No 429
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.50 E-value=79 Score=32.52 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 018605 282 AECEELQARVE 292 (353)
Q Consensus 282 ~~leeLE~rv~ 292 (353)
.++..++.+..
T Consensus 342 ~~~~~~~~~~~ 352 (575)
T 2i1j_A 342 DRLRQMQEEME 352 (575)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333443333
No 430
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=28.35 E-value=1.6e+02 Score=28.68 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 304 ELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 304 el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
....|.+++.....++.+|..++..|
T Consensus 220 ~~~~l~~~~~~~~~~~~~~~~~~~~l 245 (373)
T 3hhm_B 220 SRRRLEEDLKKQAAEYREIDKRMNSI 245 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333344444444444444444
No 431
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=28.34 E-value=1.1e+02 Score=25.55 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
.++|+.+++.|+.....-...+..|+..+..-..|..+|.
T Consensus 24 sedLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLE 63 (119)
T 1lwu_A 24 LRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVE 63 (119)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555555555555555555555444444444443
No 432
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=28.32 E-value=2.4e+02 Score=22.94 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 282 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 282 ~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
+.|.+|..++..|+.|--.|..++..-.-++..|......|
T Consensus 49 e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 49 EKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555555554
No 433
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=28.21 E-value=3.6e+02 Score=24.93 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQR 307 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~ 307 (353)
.+.+....++..+|...-.+...++.++..
T Consensus 347 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~ 376 (446)
T 3pik_A 347 VNYEQKIQNAFKEVADALALRQSLNDQISA 376 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443
No 434
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.97 E-value=1.6e+02 Score=20.72 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L 308 (353)
.++.||..++.|+..-+.|..++...
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ss 31 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNAT 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444443
No 435
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=27.90 E-value=1.8e+02 Score=28.79 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 018605 280 KQAECEELQARVETLSN------ENRNLRDELQRLS 309 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~------EN~~L~~el~~L~ 309 (353)
...+++.|+.++..+.. |...|..++..|+
T Consensus 205 ~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~ 240 (517)
T 4ad8_A 205 RARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLS 240 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 33445555555555555 4455555555443
No 436
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=27.69 E-value=1e+02 Score=20.79 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDEL 305 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el 305 (353)
.+|..|+.+|..|..++
T Consensus 20 dkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555554
No 437
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=27.58 E-value=93 Score=25.99 Aligned_cols=14 Identities=7% Similarity=0.245 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 018605 313 EKLTSENNSIKEDL 326 (353)
Q Consensus 313 ~~L~~EN~~LkeeL 326 (353)
..|......|...|
T Consensus 112 ~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 112 QDTEKNLKKIQQKI 125 (148)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 438
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=27.57 E-value=2.3e+02 Score=25.33 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 332 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~ 332 (353)
-...++++++...|+.....|.+++......+..+..-...|.+.|..+..+
T Consensus 32 D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~ 83 (237)
T 4avm_A 32 DERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSS 83 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3566777777777777777777777777777777776666777777766654
No 439
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.51 E-value=48 Score=32.99 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
|+.++..|+.|+..|..++..|++++..++.+...+
T Consensus 37 le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~ 72 (434)
T 4b4t_M 37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNN 72 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444455555555555555555555544444433
No 440
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=27.32 E-value=1.8e+02 Score=29.10 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
++..|+..+.....+|..|+..+.........|++.+..|..
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666666666666666677766666653
No 441
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=27.24 E-value=1.3e+02 Score=26.77 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 302 RDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 302 ~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+.++..++.+++.++.+...++..|..
T Consensus 104 ~~~~~~a~a~l~~a~a~l~~a~~~l~~ 130 (277)
T 2f1m_A 104 LADAQQANAAVTAAKAAVETARINLAY 130 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444445555555555443
No 442
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=27.21 E-value=36 Score=25.47 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Q 018605 269 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS----EECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 269 NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~----~e~~~L~~EN~~LkeeL~~L~ 330 (353)
.|.+|-+.|+.- +..-|.++..++.|......+++..+ -+.+.|+.|-..++.+|...+
T Consensus 9 qrlaaiktrlqa---lggseaelaafekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 9 QRLAAIKTRLQA---LGGSEAELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHH---CSSGGGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 455555544432 22334445555555555555554433 245667777777777777654
No 443
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.02 E-value=83 Score=27.48 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNL---RDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L---~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+..+..|+.++..++.+...| .-+...++...++|+.|..++++.+.+
T Consensus 75 ~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 75 KSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
No 444
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=26.97 E-value=1.3e+02 Score=23.92 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 301 LRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 301 L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
|..+|...+.++..|+.+...|+
T Consensus 72 ~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 72 YSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666555555544
No 445
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=26.97 E-value=2.7e+02 Score=25.14 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 333 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~ 333 (353)
.-+-...++++++...|+.+...|.+.+....+.+..+..--..+.+-|..|..+.
T Consensus 34 ~T~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ly~p~ 89 (243)
T 4a3a_A 34 ETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPD 89 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 34667788888888999988888888888888888887777777777787777554
No 446
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=26.85 E-value=4.1e+02 Score=27.36 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQ 306 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~ 306 (353)
+.+...++..++.....|+..+.
T Consensus 358 lddArNEItsaeSaInslqaqvS 380 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLS 380 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333333
No 447
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=26.68 E-value=2.6e+02 Score=24.65 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.+.|..++..|..--..|...+......+..|..+...|+-+|..|+.
T Consensus 98 ~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K 145 (170)
T 3l4q_C 98 SERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRK 145 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 345556666666666666666666666666666666666666666543
No 448
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=26.55 E-value=88 Score=27.81 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 018605 303 DELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 338 (353)
Q Consensus 303 ~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L 338 (353)
+++..++++++.|+.+...++.++..|.|...+..|
T Consensus 15 ~q~~q~~~Ql~~~k~Ql~q~k~qy~sltG~r~~~~~ 50 (213)
T 1r8i_A 15 EQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDL 50 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHH
Confidence 455556666666777777777777778776665554
No 449
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=26.55 E-value=73 Score=25.66 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
|.+++..|+.+...|+.++..|+.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555554443
No 450
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=26.48 E-value=1.4e+02 Score=22.93 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 281 QAECEELQARVETLSNE-------NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 281 q~~leeLE~rv~~Le~E-------N~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
+..|++|+..|..|... -........++.....+|..-+..|...|....
T Consensus 31 ~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~ 87 (103)
T 4i0x_B 31 TENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAH 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554 122233334444444444444444444444433
No 451
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=26.30 E-value=96 Score=23.57 Aligned_cols=47 Identities=6% Similarity=0.237 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
++..|..+-..|..+...|........ ++..|+.+--.|+.+|..+-
T Consensus 18 ~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL 64 (76)
T 1zhc_A 18 HFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMI 64 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHH
Confidence 344444444444444444444333223 56666666666666666553
No 452
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=26.29 E-value=1.1e+02 Score=23.04 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 018605 314 KLTSENNSIKEDLSR 328 (353)
Q Consensus 314 ~L~~EN~~LkeeL~~ 328 (353)
.|+.....|.++|+.
T Consensus 36 KL~Rk~DKl~~ele~ 50 (65)
T 3sja_C 36 KNNRKLDSLDKEINN 50 (65)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 453
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=26.07 E-value=75 Score=28.35 Aligned_cols=27 Identities=7% Similarity=0.024 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
|+..+..+......++.+|..|++++.
T Consensus 41 ~~~h~~~~~~~i~~~~~~i~~~~~~l~ 67 (228)
T 1flk_A 41 LESQLSRHDQMLSVHDIRLADMDLRFQ 67 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444444444444444433
No 454
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.05 E-value=1.3e+02 Score=25.14 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 292 ETLSNENRNLRDELQRLSEECEKLTSENNSIKE 324 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lke 324 (353)
+.|+.....|..++..|++....|......+++
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 455
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=26.05 E-value=75 Score=26.89 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 274 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 274 RRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
+..+++++..-...+..++.++.+...|..+++.|+++.+.-+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~~l~~le~~~~~~r 165 (166)
T 3pjs_K 123 QEQQQQQQFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNR 165 (166)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 456
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=25.86 E-value=1.4e+02 Score=19.54 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
..|.++|..|+.+--.|.-++..|+++...|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666666655544
No 457
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=25.80 E-value=1e+02 Score=28.15 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 258 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 302 (353)
Q Consensus 258 re~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~ 302 (353)
|++...+.+++-+.-+.-+..-|++++.+|++++..|+.....|.
T Consensus 258 r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (310)
T 3n5l_A 258 RQLELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRMAERE 302 (310)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444555666667777777666665555443
No 458
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.74 E-value=1.6e+02 Score=22.61 Aligned_cols=34 Identities=9% Similarity=0.333 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 290 RVETLSNENRNLRDELQRLSEECEKLTSENNSIK 323 (353)
Q Consensus 290 rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~Lk 323 (353)
.|+.|+.....+..++..++..+..|+.+.+.|.
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 3444555555555555444444444444444443
No 459
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.37 E-value=1.7e+02 Score=25.86 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRL 308 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L 308 (353)
-|+.+++.|+.+...|+..+..|
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l 105 (278)
T 1r8e_A 83 FYTEQERQIREKLDFLSALEQTI 105 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 460
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.23 E-value=67 Score=27.05 Aligned_cols=45 Identities=22% Similarity=0.405 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLR-----DELQRLSEECEKLTSENNSIKED 325 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~-----~el~~L~~e~~~L~~EN~~Lkee 325 (353)
++++..|..+++.++.....+. ..+..+.+|++.|..|..+|+..
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556566555555444332 23444555555555555555543
No 461
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=25.14 E-value=3.1e+02 Score=23.08 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
++..++.++..|..+...|..+-+++...+..-...+..|-++|....+
T Consensus 51 ~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~td 99 (123)
T 4aj5_K 51 ELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTD 99 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344445555555555555555555555555555666666666665544
No 462
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=24.95 E-value=3.1e+02 Score=23.45 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 018605 309 SEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 309 ~~e~~~L~~EN~~LkeeL~~L 329 (353)
++.|+.|...+..|+..|...
T Consensus 115 K~Rc~yL~~KLsHIK~lI~~Y 135 (140)
T 1xaw_A 115 KNHCKQLKSKLSHIKKMVGDY 135 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666666666554
No 463
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=24.86 E-value=2.7e+02 Score=23.60 Aligned_cols=21 Identities=5% Similarity=0.148 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 018605 309 SEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 309 ~~e~~~L~~EN~~LkeeL~~L 329 (353)
+++...++.....|..+|...
T Consensus 52 k~~q~~~e~rI~~L~~~L~~A 72 (158)
T 2p4v_A 52 KKRLREIDRRVRYLTKCMENL 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 444455555555666555543
No 464
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=24.72 E-value=1.4e+02 Score=25.22 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 268 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQ 306 (353)
Q Consensus 268 ~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~ 306 (353)
..+...+..|.+..+..+.|+.+++.|..+...|.++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 124 EQQQQQQFVRHSEKAAEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 465
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.67 E-value=1.4e+02 Score=22.00 Aligned_cols=36 Identities=6% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECE 313 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~ 313 (353)
+-+-+.|+.|+.+.+.|...-...+..-..|..++.
T Consensus 28 lERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Kyk 63 (63)
T 1urq_A 28 DERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 466
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=24.53 E-value=1.1e+02 Score=22.59 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
++|+.-...+......|...+..|+..+..|
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=24.41 E-value=2.6e+02 Score=25.12 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 277 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 277 R~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
+.+|.+-++.|..++..|+.+-..|..++..-..--..+..-...+
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~ 59 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEK 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 468
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=24.36 E-value=62 Score=23.82 Aligned_cols=40 Identities=30% Similarity=0.457 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRD--ELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~--el~~L~~e~~~L~~EN~~L 322 (353)
++++|..+-+.|.....+|-- ++..+.++...|+.|...|
T Consensus 26 rieelkkkweelkkkieelggggevkkveeevkkleeeikkl 67 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhcC
No 469
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=24.33 E-value=3.8e+02 Score=23.84 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 274 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 274 RRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+..+...+.....++..+..++.+...+..++...+..++.+..|...++..+..
T Consensus 101 ~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~ 155 (301)
T 2efk_A 101 TKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAER 155 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 470
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.25 E-value=2e+02 Score=22.66 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~---el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+..+..|+..|+.|...+..+.. ....++++++.|..+...+-..|..
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~ 68 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 68 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
No 471
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.94 E-value=1.1e+02 Score=20.72 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 299 RNLRDELQRLSEECEKLTSENNSI 322 (353)
Q Consensus 299 ~~L~~el~~L~~e~~~L~~EN~~L 322 (353)
.+.+.+|..|+.+.+.|+.|..+|
T Consensus 11 eEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 472
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.89 E-value=1.2e+02 Score=26.49 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
+..|+.+|+.|+.....-..+|..|++++..|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 473
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=23.79 E-value=74 Score=27.10 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
..+.+.+..|-.+++.|.++.++|..++..|+++...+
T Consensus 94 ~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~ 131 (140)
T 3iyn_Q 94 SARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSAL 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 474
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=23.78 E-value=1.3e+02 Score=26.04 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 292 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 292 ~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.|+.-+..|+..+..|..+..+|..+-..|+.+|...
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka 47 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDA 47 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=23.61 E-value=2.5e+02 Score=21.48 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 270 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 318 (353)
Q Consensus 270 RESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~E 318 (353)
|++-|.+-+-=++++++|..=-+.-+.|-.-|..++...++....|..|
T Consensus 21 reAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~~E 69 (70)
T 3brv_B 21 RDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
No 476
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.54 E-value=3e+02 Score=22.40 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
|.|-.|+.|.+...+| .+-.+--.-+-+|..+|..|+.+.+.+..+...-.++.......-..|+++...
T Consensus 19 e~Eta~L~~al~~eds--d~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~ 88 (101)
T 4aj5_1 19 DCETARLQRALDGEES--DFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSM 88 (101)
T ss_dssp HHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHH
No 477
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=23.44 E-value=1.2e+02 Score=27.19 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018605 284 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 331 (353)
Q Consensus 284 leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g 331 (353)
.++|+..+..|-.....|-.+-=.|...+..-.-|...|+.++..|+|
T Consensus 57 e~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLrG 104 (182)
T 1ytz_I 57 MQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRG 104 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHh
No 478
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=23.41 E-value=1.7e+02 Score=21.53 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTS 317 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~ 317 (353)
++|+.-...+......|...+..|...+..|..
T Consensus 9 ~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~ 41 (97)
T 2vs0_A 9 EEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAA 41 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 479
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=23.32 E-value=1.2 Score=39.61 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCC
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 344 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~~~~ 344 (353)
+.+++.|+.+++.|+.+..+|+.++.++..+++-++....+=++++........+.+|...+|+
T Consensus 18 ~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDn 81 (177)
T 3a6m_A 18 GQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDD 81 (177)
T ss_dssp HHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 480
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=22.95 E-value=2.7e+02 Score=21.64 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 280 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 280 Kq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
+.+-+..|....-..+.+...|..++...++++..+..+....-.+|..+
T Consensus 28 ~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELnsm 77 (77)
T 3mtu_E 28 RTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLELNNM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcC
No 481
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=22.75 E-value=1.7e+02 Score=29.68 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
+-+.+.|+.+.+.|+.+...|+.-|..-.....-+..|...++++.
T Consensus 415 ~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y 460 (470)
T 3ilw_A 415 ALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRH 460 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
No 482
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=22.58 E-value=45 Score=25.64 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhc
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 341 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~i~~L~~~ 341 (353)
.++|..+...+.+++.-|..-+..-+.-|.+|.+++.-|. +.|+.|+.+
T Consensus 17 ~eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK--~EIRRlERn 65 (71)
T 3bbp_D 17 KEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLK--SEIRRLERN 65 (71)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--HHHHHHHhh
No 483
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=22.53 E-value=2.6e+02 Score=25.03 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 277 RLRKQAECEELQARVETLSN----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 277 R~RKq~~leeLE~rv~~Le~----EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
|.+|+--.+....+++.|+. +...|.+.-..|...-+....=|..|+++|-.|
T Consensus 134 R~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l 190 (237)
T 4avm_A 134 RGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPIL 190 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=22.48 E-value=30 Score=22.25 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 283 ECEELQARVETLSNENRNLRDELQRLSEE 311 (353)
Q Consensus 283 ~leeLE~rv~~Le~EN~~L~~el~~L~~e 311 (353)
.+..||+++..|+..+..-.+++..|.++
T Consensus 1 qiaaleqkiaaleqkcaaceqkiaaleqk 29 (32)
T 4g1a_A 1 QIAALEQKIAALEQKCAACEQKIAALEQK 29 (32)
T ss_dssp -CHHHHHHHHHHHHHTSSHHHHHHHHC--
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHc
No 485
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.40 E-value=2.5e+02 Score=21.10 Aligned_cols=38 Identities=8% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 278 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 315 (353)
Q Consensus 278 ~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L 315 (353)
.+-+.+|+-++.++..|+..-.....++...+.+...|
T Consensus 6 ~~H~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eL 43 (65)
T 3t97_B 6 KQHQTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDL 43 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 486
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.34 E-value=2.6e+02 Score=21.32 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
+..++.|..+.+.|......+..++..++++-......-..|...|..
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~ 50 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLT 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=22.33 E-value=3.4e+02 Score=22.57 Aligned_cols=71 Identities=7% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 257 Ere~KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
++-.+++.-+..-+.+-.....|+.+...+|..+|..-..+....+ .....+.++..|..+-..++.+|..
T Consensus 19 q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~-~~~~yk~~y~~l~k~Y~~~~keLd~ 89 (119)
T 3etw_A 19 QNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEA-NTRFYKSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHHH
No 488
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.26 E-value=1.2e+02 Score=19.64 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 291 VETLSNENRNLRDELQRLSEECEKLTSENNS 321 (353)
Q Consensus 291 v~~Le~EN~~L~~el~~L~~e~~~L~~EN~~ 321 (353)
+..|+.+...|..-++.|++....|+.-.+.
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 489
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.24 E-value=2.3e+02 Score=20.70 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L 329 (353)
..|=.-|=.|+.+.++|++++..|++-++.-..--..|..-+.++
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.16 E-value=90 Score=23.95 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018605 298 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 330 (353)
Q Consensus 298 N~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~ 330 (353)
|..|...|..|..+++.|......+.+++..+.
T Consensus 1 ~~~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 1 GSMLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=22.07 E-value=2.2e+02 Score=23.59 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 289 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 326 (353)
Q Consensus 289 ~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL 326 (353)
++|..|+.+...+..++.+|++-+.+.-.|-++.--.|
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~L 41 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=21.97 E-value=1.9e+02 Score=26.47 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 285 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 285 eeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.+|+.+++.++.+...++.++..++.++...+.+..+++.....
T Consensus 65 ~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~ 108 (341)
T 3fpp_A 65 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQT 108 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 493
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=21.96 E-value=1.5e+02 Score=27.16 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 018605 256 DERELKRQKRKQSNRESARRSR-LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 334 (353)
Q Consensus 256 DEre~KR~RRk~~NRESARRSR-~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~L~g~~~ 334 (353)
++.|.++-.|...--+.-.|.| -+=.+++++++.++..|.. ..=+.-++..++.+..|+.|+..-+.+|...+-...
T Consensus 16 ~~~EH~~f~~Ak~~Le~~hr~k~~~VmkEW~eae~q~k~l~k--adkk~~~~rFQ~~v~aLE~E~~~ErqqL~etH~qRV 93 (211)
T 3umh_A 16 DENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPK--ADKKAVIQHFQEKVESLEQEAANERQQLVETHMARV 93 (211)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 018605 335 VANL 338 (353)
Q Consensus 335 i~~L 338 (353)
...|
T Consensus 94 ~a~l 97 (211)
T 3umh_A 94 EAML 97 (211)
T ss_dssp HHHH
T ss_pred HHHH
No 494
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=21.89 E-value=2.7e+02 Score=21.27 Aligned_cols=49 Identities=29% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRL-------SEECEKLTSENNSIKEDLSRL 329 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L-------~~e~~~L~~EN~~LkeeL~~L 329 (353)
|.-+.+-..-.+.|+.-|+.|+.+++.| +++-+-|...-.+-++.|..|
T Consensus 11 q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L 66 (70)
T 3brv_B 11 QRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
No 495
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=21.89 E-value=4.8e+02 Score=24.11 Aligned_cols=67 Identities=3% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 261 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 327 (353)
Q Consensus 261 KR~RRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~ 327 (353)
++..+...-+.-.+..+...+....++..+|...-.+...++.++..+++.+...+......+.+..
T Consensus 326 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~ 392 (442)
T 1yc9_A 326 RLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQ 392 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=21.86 E-value=19 Score=32.71 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 273 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 314 (353)
Q Consensus 273 ARRSR~RKq~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~ 314 (353)
.+..++.++++.++.+.+.+.+..+..+|++++++|+++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 240 AILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcc
No 497
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=21.77 E-value=2.1e+02 Score=20.05 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT 316 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L~~el~~L~~e~~~L~ 316 (353)
+++..-|-+||.+|+.-......+++.+-.++..++
T Consensus 6 ~eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~E 41 (45)
T 4gif_A 6 GEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLE 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=21.61 E-value=2.5e+02 Score=20.87 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 286 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 328 (353)
Q Consensus 286 eLE~rv~~Le~EN~~L~~el~~L~~e~~~L~~EN~~LkeeL~~ 328 (353)
.|..+|..|+.++..|+.-++.-+.....|+.=...+-.+...
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 499
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.56 E-value=2.9e+02 Score=21.54 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-HHHHHHHHHH
Q 018605 281 QAECEELQARVETLSNENRNL----------RDELQRLSEECEK-LTSENNSIKE 324 (353)
Q Consensus 281 q~~leeLE~rv~~Le~EN~~L----------~~el~~L~~e~~~-L~~EN~~Lke 324 (353)
+..+++++.-|.+++-|...+ ..+|...+.++.. |+.+...|..
T Consensus 40 e~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 40 EQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 500
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=21.52 E-value=88 Score=25.94 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018605 287 LQARVETLSNENRNLRDELQRLSE 310 (353)
Q Consensus 287 LE~rv~~Le~EN~~L~~el~~L~~ 310 (353)
|+.+++.|+.+...|+.++..|++
T Consensus 21 ~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 21 IEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Done!