BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018606
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 53 VYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKY-LGLNPDCFFVGCDI 109
+Y++I +S TR V +N +LP GS++ D G G G Y + L FV +
Sbjct: 4 IYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYA-V 62
Query: 110 SPSLI---KICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVR 166
PS++ + V E A NL D ISI +HH S +K+ +E R
Sbjct: 63 EPSIVXRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHF---SHLEKSFQEXQR 119
Query: 167 VVKKGSLVLIT 177
+++ G++VL+T
Sbjct: 120 IIRDGTIVLLT 130
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 80 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVD-------RGHEVLVAD 128
P G+ VL+AGCG G + NPD DISP ++ + + + L A+
Sbjct: 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN 95
Query: 129 AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 188
+LP+ D VL HL + ++A++ L +V+K G T+ +E + S
Sbjct: 96 IFSLPFEDSSFDHIFVCFVLEHLQSP---EEALKSLKKVLKPGG----TITVIEGDHGSC 148
Query: 189 VTKWTPLTQKYVEEW 203
+ P +K +E W
Sbjct: 149 Y--FHPEGKKAIEAW 161
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 81 SGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA--------DA 129
SG VLD GCG GK L D G IS + R +A DA
Sbjct: 61 SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADA 120
Query: 130 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
+LP+ DA ++ LHH R +A+ E RV++ G V I
Sbjct: 121 XDLPFEDASFDAVWALESLHHXPD---RGRALREXARVLRPGGTVAIA 165
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 71 KVATFLNSLPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA 127
K +F+N L + + D GCG G +L G D+ P I+I + + A
Sbjct: 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA 95
Query: 128 DAV--------NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
D V NLP++++ D S ++++ E + + E + +KKG + ++
Sbjct: 96 DRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFE----RGMNEWSKYLKKGGFIAVS 149
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 71 KVATFLNSLPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA 127
K +F+N L + + D GCG G +L G D+ P I+I + + A
Sbjct: 42 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA 101
Query: 128 DAV--------NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
D V NLP++++ D S ++++ E + + E + +KKG + ++
Sbjct: 102 DRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFE----RGMNEWSKYLKKGGFIAVS 155
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 16/100 (16%)
Query: 82 GSLVLDAGCGNGKYLGLN----PDCFFVGCDISPSLIKICVDRGHEV--LVADAVNLPYR 135
+ VLD GCG G Y P+ G D+S IK R +V VA + LP+
Sbjct: 86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFS 145
Query: 136 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 175
DA I I EEL RVVK G V+
Sbjct: 146 DTSXDAIIRIYA----------PCKAEELARVVKPGGWVI 175
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 12/133 (9%)
Query: 53 VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFV-GCDISP 111
VYD + + +W VA L + G + D GCG G L D + V G D+S
Sbjct: 10 VYDELX---QDVPYPEW--VAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLSE 64
Query: 112 SLIKICVDRGHEV------LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV 165
++I ++ E V D L I L++L TE+ K+ +
Sbjct: 65 EXLEIAQEKAXETNRHVDFWVQDXRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAA 124
Query: 166 RVVKKGSLVLITV 178
R++ G +L V
Sbjct: 125 RLLTDGGKLLFDV 137
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 77 NSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-GCDISPSLIKICVDRGH------------ 122
N L +LD GCG+GK L L + V G DI+ I++
Sbjct: 26 NYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKA 85
Query: 123 EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180
E V +A +L + D A+ A L + R + I+E+ RV+K G+ + + +
Sbjct: 86 EFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143
>pdb|1XI6|A Chain A, Extragenic Suppressor From Pyrococcus Furiosus
Pfu-1862794- 001
Length = 262
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 243 DKLWESISLTSQSE-DDSVISQDVKIITNQQEYFV---PWHLPYHRAEVSGASACALANG 298
DKL E + L+ +E +V+S++V +I N+ EY V P Y+ ++G AL+
Sbjct: 55 DKLAEDLILSRITELGVNVVSEEVGVIDNESEYTVIVDPLDGSYNF--IAGIPFFALSLA 112
Query: 299 LAKKDDKKGAVVYNRYYHVFCDG 321
+ KKD A++Y F +G
Sbjct: 113 VFKKDKPIYAIIYEPMTERFFEG 135
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 85 VLDAGCGN--GKYLGLNPDCFFVGCDISPSLIKICVDRGH----EVLVADAVNLPYRSDF 138
VLD GCG+ G Y VG DIS I+ +RG + D +LP+ ++
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKERGEGPDLSFIKGDLSSLPFENEQ 116
Query: 139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178
+A I ++ L +A+ E+ RV+K I +
Sbjct: 117 FEA---IXAINSLEWTEEPLRALNEIKRVLKSDGYACIAI 153
>pdb|1S48|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 1 (Residues 71-679) From Bvdv
pdb|1S49|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 1 (Residues 71-679) From Bovine Viral Diarrhea
Virus Complexed With Gtp
Length = 609
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 158 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRV-RSPSA 216
K +E+LVR +K G + A+ + +K V+ VE+ PRV + P A
Sbjct: 168 KHLVEQLVRDLKAGRKIKYYETAIPKNEKRDVSDDWQAGDLVVEK-----RPRVIQYPEA 222
Query: 217 RTLESIPETEDNGSEEQ--------GKEPKQSVPDKL---WES------ISLTSQSEDDS 259
+T +I + N ++Q GK P ++ DK+ W+S +S +++ D
Sbjct: 223 KTRLAITKVXYNWVKQQPVVIPGYEGKTPLFNIFDKVRKEWDSFNEPVAVSFDTKAWDTQ 282
Query: 260 VISQDVKIITNQQEYFVP--WH 279
V S+D+++I Q+Y+ WH
Sbjct: 283 VTSKDLQLIGEIQKYYYKKEWH 304
>pdb|1S4F|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|B Chain B, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|C Chain C, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|D Chain D, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
Length = 601
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 158 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRV-RSPSA 216
K +E+LVR +K G + A+ + +K V+ VE+ PRV + P A
Sbjct: 160 KHLVEQLVRDLKAGRKIKYYETAIPKNEKRDVSDDWQAGDLVVEK-----RPRVIQYPEA 214
Query: 217 RTLESIPETEDNGSEEQ--------GKEPKQSVPDKL---WES------ISLTSQSEDDS 259
+T +I + N ++Q GK P ++ DK+ W+S +S +++ D
Sbjct: 215 KTRLAITKVMYNWVKQQPVVIPGYEGKTPLFNIFDKVRKEWDSFNEPVAVSFDTKAWDTQ 274
Query: 260 VISQDVKIITNQQEYFVP--WH 279
V S+D+++I Q+Y+ WH
Sbjct: 275 VTSKDLQLIGEIQKYYYKKEWH 296
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 85 VLDAGCGNGKYLG-LNPDCFF---VGCDISPSLIKICVDRGHEV-----------LVADA 129
V+D GCG G L L D FF G D+S ++I +R + L+ A
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92
Query: 130 VNLPYRSDFG-DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182
+ + G DAA I V+ HL R A E ++ + +V++T +E
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLDLS--RLGAFERVLFEFAQPKIVIVTTPNIE 144
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 157 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK-YVEEWIGPGSPRVRSPS 215
+ +A+E+LV+ ++ G L + VE S++ P TQ + EW+GP R +
Sbjct: 210 KVQAMEDLVKSLRGGRLTEACIRPVESSLVSVLAH-PPYTQSALISEWLGPVQERFFAHQ 268
Query: 216 ARTLESIP 223
+T +P
Sbjct: 269 CQTYNDVP 276
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 157 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK-YVEEWIGPGSPRVRSPS 215
+ +A+E+LV+ ++ G L + VE S++ P TQ + EW+GP R +
Sbjct: 216 KVQAMEDLVKSLRGGRLTEACIRPVESSLVSVLAH-PPYTQSALISEWLGPVQERFFAHQ 274
Query: 216 ARTLESIP 223
+T +P
Sbjct: 275 CQTYNDVP 282
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 85 VLDAGCGNGKYLG-LNPDCFF---VGCDISPSLIKICVDRGHEV-----------LVADA 129
V+D GCG G L L D FF G D+S ++I +R + L+ A
Sbjct: 23 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 82
Query: 130 VNLPYRSDFG-DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182
+ + G DAA I V+ HL R A E ++ + +V++T +E
Sbjct: 83 LTYQDKRFHGYDAATVIEVIEHLDLS--RLGAFERVLFEFAQPKIVIVTTPNIE 134
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 85 VLDAGCGNGKYLGLNPDCFF--VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAA 142
VLD GCG G++L L + +G DI+ +IK C + V+ +DA+ Y D
Sbjct: 45 VLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-FNVVKSDAIE--YLKSLPDKY 101
Query: 143 ISIAVLHHL 151
+ ++ H
Sbjct: 102 LDGVMISHF 110
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 78 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGH-------EVL 125
L G VLD G G G YL + D+ ++ ++ + EVL
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVL 93
Query: 126 VADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 185
++ +P + D H LS K +EEL RV K + + I W E+ D
Sbjct: 94 KSEENKIPLPDNTVDFIFMAFTFHELSEPL---KFLEELKRVAKPFAYLAIIDWKKEERD 150
Query: 186 KS 187
K
Sbjct: 151 KG 152
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 159 KAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK-YVEEWIGPGSPRVRSPSAR 217
+A E+LV+ ++ G L + VE S++ P TQ + EW+GP R + +
Sbjct: 209 QAXEDLVKSLRGGRLTEACIRPVESSLVSVLAH-PPYTQSALISEWLGPVQERFFAHQCQ 267
Query: 218 TLESIP 223
T +P
Sbjct: 268 TYNDVP 273
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 71 KVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLI--------KICVD 119
K +F+++L + SL+ D GCG G L + G D P I K+ +
Sbjct: 42 KALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQ 101
Query: 120 RGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI--T 177
+ +V +L + D D S ++++ E + ++E +K G + + +
Sbjct: 102 NRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFE----RGLKEWRNYLKPGGYLAVSES 157
Query: 178 VWAVEQEDKSLVTKW 192
VW +Q + W
Sbjct: 158 VWFTDQRPAEIHDFW 172
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 71 KVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLI--------KICVD 119
K +F+++L + SL+ D GCG G L + G D P I K+ +
Sbjct: 37 KALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQ 96
Query: 120 RGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI--T 177
+ +V +L + D D S ++++ E + ++E +K G + + +
Sbjct: 97 NRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFE----RGLKEWRNYLKPGGYLAVSES 152
Query: 178 VWAVEQEDKSLVTKW 192
VW +Q + W
Sbjct: 153 VWFTDQRPAEIHDFW 167
>pdb|3PFG|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sam And
Dtdp-Phenol
pdb|3PFH|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
pdb|3PFH|D Chain D, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
Length = 263
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 80 PSGSLVLDAGCGNGKYLGLNPDCFFV--GCDISPSLIKICVDRGHEVLV--ADAVNLPYR 135
P + +LD CG G +L D F G ++S ++ I R + ++ D +
Sbjct: 49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLG 108
Query: 136 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179
F + + HL+ ++ A+E V +V++ W
Sbjct: 109 RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 71 KVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGHEV--- 124
K +F+++L SL+ D GCG G L + G D I I +
Sbjct: 36 KALSFIDNLTEKSLIADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ 95
Query: 125 -----LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
+V +LP+R++ D S ++++ E + + E + +KKG + ++
Sbjct: 96 NRVTGIVGSXDDLPFRNEELDLIWSEGAIYNIGFE----RGLNEWRKYLKKGGYLAVS 149
>pdb|2CJQ|A Chain A, Bovine Viral Diarrhea Virus Cp7-R12 Rna-Dependent Rna
Polymerase
Length = 720
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 35/147 (23%)
Query: 158 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW-----IGPGSPRV- 211
K +E+L+R +K G + A+ + +K V+ ++W + PRV
Sbjct: 238 KHLVEQLIRDLKTGRKIRYYETAIPKNEKRDVS----------DDWQSGDLVDEKKPRVI 287
Query: 212 RSPSARTLESIPETEDNGSEEQ--------GKEPKQSVPDKL---WE------SISLTSQ 254
+ P A+T +I + N ++Q GK P ++ +K+ W+ ++S ++
Sbjct: 288 QYPEAKTRLAITKVMYNWVKQQPVVIPGYEGKTPLFNIFNKVRKEWDLFNEPVAVSFDTK 347
Query: 255 SEDDSVISQDVKIITNQQEYFV--PWH 279
+ D V S+D+++I Q+Y+ WH
Sbjct: 348 NWDTQVTSRDLRLIGEIQKYYYRKEWH 374
>pdb|3E23|A Chain A, Crystal Structure Of The Rpa2492 Protein In Complex With
Sam From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr299
Length = 211
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 70 PKVAT---FLNSLPSGSLVLDAGCGNG 93
P+ AT FL LP+G+ +L+ GCG G
Sbjct: 29 PRSATLTKFLGELPAGAKILELGCGAG 55
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 168 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTL 219
V KG+ V+I +WA+ +K +W Q E ++ P ++ SPS L
Sbjct: 368 VDKGTEVIINLWALHHNEK----EWHQPDQFMPERFLNPAGTQLISPSVSYL 415
>pdb|3CGG|A Chain A, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
pdb|3CGG|B Chain B, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
Length = 195
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 59 PHFSSTRFAKWPKVATFLNSL-----------PSGSLVLDAGCGNGKYLGL--NPDCFFV 105
P S +W +A N + P G+ +LDAGCG G+ G +
Sbjct: 13 PAHSENYAQRWRNLAAAGNDIYGEARLIDAXAPRGAKILDAGCGQGRIGGYLSKQGHDVL 72
Query: 106 GCDISPSLIKICVDRGHEV--LVAD-AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 162
G D+ P LI E +V D +V+ +DF D +S + E R+ A+
Sbjct: 73 GTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDF-DLIVSAGNVXGFLAEDGREPALA 131
Query: 163 ELVRVV 168
+ R +
Sbjct: 132 NIHRAL 137
>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
Length = 214
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 67 AKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGH 122
AKW + F N P + ++ G G G ++ NPD ++G DI S++ +D+
Sbjct: 32 AKWRDL--FGNDNP---IHVEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVL 86
Query: 123 EVLVAD 128
EV V +
Sbjct: 87 EVGVPN 92
>pdb|3PNL|B Chain B, Crystal Structure Of E.coli Dha Kinase Dhak-dhal Complex
Length = 211
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 152 STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQ 197
+T++R+ +EEL ++ + G+ +I+ E DK++ W P+ +
Sbjct: 95 ATQARQSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVE 140
>pdb|2BTD|A Chain A, Crystal Structure Of Dhal From E. Coli
Length = 210
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 152 STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQ 197
+T++R+ +EEL ++ + G+ +I+ E DK++ W P+ +
Sbjct: 94 ATQARQSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVE 139
>pdb|3B98|A Chain A, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1)
pdb|3B98|B Chain B, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1)
pdb|3B99|A Chain A, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1) In Complex With Substrate Analog
U51605
pdb|3B99|B Chain B, Crystal Structure Of Zebrafish Prostacyclin Synthase
(Cytochrome P450 8a1) In Complex With Substrate Analog
U51605
Length = 475
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 219 LESIPETEDNGSEEQGKEPKQSVP---DKLWESISLTSQSEDDSVISQDVKI-ITNQQEY 274
L ++ E G + +E +++ P LWE++ LT+ + ++QD KI ++N QEY
Sbjct: 287 LRAVREEIQGGKHLRLEERQKNTPVFDSVLWETLRLTAAALITRDVTQDKKICLSNGQEY 346
Query: 275 FV 276
+
Sbjct: 347 HL 348
>pdb|3VIQ|A Chain A, Crystal Structure Of Swi5-Sfr1 Complex From Fission Yeast
pdb|3VIQ|C Chain C, Crystal Structure Of Swi5-Sfr1 Complex From Fission Yeast
Length = 122
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 150 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE--QEDK---SLVTKWTPLTQKYVEEWI 204
H+ SRR K +E+ VR +++ + T VE EDK +L+ KW Q+ E
Sbjct: 2 HMQLLSRRLK-LEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLF 60
Query: 205 GPGSPRVRSPSARTLE-SIPETEDNGS 230
P + R+R T I E E+ G
Sbjct: 61 KPMAERIRLAGGVTQSFRIEEGENKGQ 87
>pdb|1O4Y|A Chain A, The Three-Dimensional Structure Of Beta-Agarase A From
Zobellia Galactanivorans
Length = 288
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 187 SLVTKWTPLTQKYVEEWIGPGSPRVRSPSART 218
+ +KW P Y+ W GPGS +P A T
Sbjct: 44 AFTSKWKP---SYINGWTGPGSTIFNAPQAWT 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,135,342
Number of Sequences: 62578
Number of extensions: 467633
Number of successful extensions: 1233
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1216
Number of HSP's gapped (non-prelim): 44
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)