Query 018606
Match_columns 353
No_of_seqs 435 out of 2788
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1331 Predicted methyltransf 100.0 3.8E-44 8.3E-49 326.3 17.0 283 41-352 5-289 (293)
2 COG2226 UbiE Methylase involve 99.9 7.7E-23 1.7E-27 186.2 12.8 133 47-182 10-160 (238)
3 PF01209 Ubie_methyltran: ubiE 99.9 2E-22 4.3E-27 184.6 9.1 135 46-183 5-158 (233)
4 PLN02233 ubiquinone biosynthes 99.8 3.8E-20 8.2E-25 172.6 13.6 134 47-183 32-187 (261)
5 KOG1540 Ubiquinone biosynthesi 99.8 4.3E-19 9.2E-24 159.6 12.3 153 28-183 39-219 (296)
6 PLN02396 hexaprenyldihydroxybe 99.8 1.3E-17 2.7E-22 159.5 14.2 98 81-181 131-238 (322)
7 TIGR02752 MenG_heptapren 2-hep 99.7 2.3E-17 5E-22 150.7 13.5 131 47-180 4-153 (231)
8 PF08241 Methyltransf_11: Meth 99.7 6.6E-18 1.4E-22 131.5 8.0 88 86-176 1-95 (95)
9 PF13489 Methyltransf_23: Meth 99.7 7.7E-18 1.7E-22 144.2 9.2 114 63-182 3-119 (161)
10 PRK10258 biotin biosynthesis p 99.7 2.2E-17 4.7E-22 153.0 12.2 134 45-182 4-144 (251)
11 PRK05785 hypothetical protein; 99.7 2.3E-17 4.9E-22 150.7 12.0 122 46-171 7-140 (226)
12 PRK14103 trans-aconitate 2-met 99.7 2.6E-17 5.5E-22 153.0 10.4 98 79-180 27-128 (255)
13 PLN02244 tocopherol O-methyltr 99.7 1.2E-16 2.5E-21 154.6 15.2 100 80-182 117-227 (340)
14 PRK11036 putative S-adenosyl-L 99.7 3.9E-17 8.3E-22 151.8 9.9 127 53-182 5-153 (255)
15 PF07021 MetW: Methionine bios 99.7 1.4E-16 3E-21 139.4 9.5 101 75-181 7-112 (193)
16 PF12847 Methyltransf_18: Meth 99.7 3.4E-16 7.5E-21 126.4 8.2 97 81-178 1-111 (112)
17 KOG4300 Predicted methyltransf 99.7 6.8E-16 1.5E-20 135.0 10.4 132 45-183 44-187 (252)
18 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.4E-15 3.1E-20 140.7 12.2 98 79-179 54-165 (247)
19 PTZ00098 phosphoethanolamine N 99.6 2.2E-15 4.9E-20 140.7 13.2 104 78-182 49-160 (263)
20 PF13847 Methyltransf_31: Meth 99.6 1.2E-15 2.7E-20 130.5 9.2 97 80-180 2-112 (152)
21 COG2227 UbiG 2-polyprenyl-3-me 99.6 4.8E-16 1E-20 139.9 6.7 99 81-182 59-165 (243)
22 PRK11207 tellurite resistance 99.6 7.8E-15 1.7E-19 131.3 12.5 109 70-181 20-138 (197)
23 TIGR00740 methyltransferase, p 99.6 4.8E-15 1E-19 136.3 11.0 99 79-180 51-163 (239)
24 PRK01683 trans-aconitate 2-met 99.6 3.9E-15 8.5E-20 138.3 10.4 98 79-180 29-132 (258)
25 PLN02490 MPBQ/MSBQ methyltrans 99.6 4.7E-15 1E-19 142.4 11.0 135 41-178 65-215 (340)
26 TIGR03587 Pse_Me-ase pseudamin 99.6 1.2E-14 2.7E-19 130.6 12.1 105 72-180 34-144 (204)
27 TIGR00477 tehB tellurite resis 99.6 1.5E-14 3.3E-19 129.2 12.6 107 71-180 21-135 (195)
28 PRK15068 tRNA mo(5)U34 methylt 99.6 9.6E-15 2.1E-19 140.1 11.1 108 70-182 112-230 (322)
29 PF13649 Methyltransf_25: Meth 99.6 2.7E-15 5.9E-20 119.5 5.3 87 85-172 1-101 (101)
30 TIGR02072 BioC biotin biosynth 99.6 1E-14 2.2E-19 133.0 9.7 99 81-182 34-139 (240)
31 PLN02336 phosphoethanolamine N 99.6 1.5E-14 3.2E-19 146.1 11.6 101 79-182 264-373 (475)
32 TIGR03840 TMPT_Se_Te thiopurin 99.6 2.8E-14 6E-19 129.1 12.2 112 70-182 21-156 (213)
33 PRK11873 arsM arsenite S-adeno 99.6 1.9E-14 4E-19 134.9 10.6 102 77-181 73-186 (272)
34 PRK12335 tellurite resistance 99.5 5.1E-14 1.1E-18 133.2 13.0 106 71-179 111-224 (287)
35 TIGR00452 methyltransferase, p 99.5 2.8E-14 6E-19 136.0 10.9 100 79-182 119-229 (314)
36 PF08242 Methyltransf_12: Meth 99.5 2.9E-15 6.4E-20 118.6 3.0 86 86-174 1-99 (99)
37 PRK00216 ubiE ubiquinone/menaq 99.5 1.1E-13 2.3E-18 126.4 13.6 132 46-181 9-161 (239)
38 PRK06202 hypothetical protein; 99.5 6.2E-14 1.3E-18 128.4 12.0 111 69-182 48-170 (232)
39 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 6.7E-14 1.5E-18 126.4 11.7 127 51-180 2-145 (223)
40 KOG1270 Methyltransferases [Co 99.5 1.9E-14 4.1E-19 130.6 7.6 96 82-183 90-200 (282)
41 COG2230 Cfa Cyclopropane fatty 99.5 1.5E-13 3.2E-18 127.8 12.2 102 78-183 69-181 (283)
42 smart00138 MeTrc Methyltransfe 99.5 4.5E-14 9.9E-19 131.9 8.5 97 81-178 99-242 (264)
43 PRK06922 hypothetical protein; 99.5 1.4E-13 2.9E-18 140.4 12.3 105 78-182 415-541 (677)
44 PF02353 CMAS: Mycolic acid cy 99.5 6.5E-14 1.4E-18 131.2 8.6 103 78-184 59-172 (273)
45 PRK08317 hypothetical protein; 99.5 2.8E-13 6.1E-18 123.2 12.5 100 78-180 16-126 (241)
46 PF05401 NodS: Nodulation prot 99.5 1.1E-13 2.4E-18 121.5 8.9 100 80-180 42-148 (201)
47 COG4106 Tam Trans-aconitate me 99.5 9.3E-14 2E-18 122.6 8.2 117 63-184 13-135 (257)
48 KOG1541 Predicted protein carb 99.5 2.4E-13 5.3E-18 120.2 10.8 130 53-183 15-165 (270)
49 smart00828 PKS_MT Methyltransf 99.5 2E-13 4.4E-18 124.0 10.3 93 84-180 2-106 (224)
50 PRK13255 thiopurine S-methyltr 99.5 4.7E-13 1E-17 121.5 12.5 131 47-180 3-157 (218)
51 TIGR01983 UbiG ubiquinone bios 99.5 3.7E-13 8E-18 122.2 11.1 97 81-180 45-151 (224)
52 TIGR02021 BchM-ChlM magnesium 99.5 3.2E-13 6.9E-18 122.6 10.5 100 72-175 45-155 (219)
53 TIGR03438 probable methyltrans 99.5 6E-13 1.3E-17 126.7 12.7 107 76-183 58-182 (301)
54 PRK00107 gidB 16S rRNA methylt 99.5 1.2E-12 2.7E-17 115.9 13.5 96 77-180 41-147 (187)
55 PRK11705 cyclopropane fatty ac 99.4 3.6E-13 7.8E-18 132.1 10.6 101 78-182 164-271 (383)
56 PF03848 TehB: Tellurite resis 99.4 5E-13 1.1E-17 118.3 10.5 108 70-180 20-135 (192)
57 TIGR02081 metW methionine bios 99.4 6.1E-13 1.3E-17 118.6 10.2 101 73-179 5-110 (194)
58 PF08003 Methyltransf_9: Prote 99.4 3.1E-13 6.7E-18 125.9 7.8 116 66-186 101-227 (315)
59 PRK11088 rrmA 23S rRNA methylt 99.4 5E-13 1.1E-17 125.4 9.2 91 81-181 85-184 (272)
60 PLN02336 phosphoethanolamine N 99.4 1.7E-12 3.7E-17 131.1 11.8 102 80-182 36-146 (475)
61 KOG3010 Methyltransferase [Gen 99.4 7E-13 1.5E-17 119.0 7.1 123 54-180 5-139 (261)
62 TIGR00138 gidB 16S rRNA methyl 99.4 5.8E-12 1.3E-16 111.2 12.9 90 81-178 42-142 (181)
63 COG4976 Predicted methyltransf 99.4 2.4E-13 5.3E-18 120.8 3.7 136 46-184 83-231 (287)
64 PRK00121 trmB tRNA (guanine-N( 99.4 1.4E-12 3.1E-17 117.1 7.2 100 81-180 40-158 (202)
65 TIGR02469 CbiT precorrin-6Y C5 99.4 9.3E-12 2E-16 101.8 11.5 95 79-179 17-123 (124)
66 PRK11188 rrmJ 23S rRNA methylt 99.3 4.3E-12 9.4E-17 114.6 10.0 110 70-183 40-170 (209)
67 PRK13256 thiopurine S-methyltr 99.3 1.3E-11 2.9E-16 112.1 13.1 135 45-182 7-167 (226)
68 PLN03075 nicotianamine synthas 99.3 5.7E-12 1.2E-16 118.4 9.7 96 81-178 123-233 (296)
69 PLN02585 magnesium protoporphy 99.3 1.1E-11 2.4E-16 118.3 11.4 127 45-177 88-248 (315)
70 PRK13944 protein-L-isoaspartat 99.3 1E-11 2.2E-16 111.8 10.5 91 79-178 70-173 (205)
71 PLN02232 ubiquinone biosynthes 99.3 6E-12 1.3E-16 108.9 8.6 76 105-183 1-86 (160)
72 PRK07580 Mg-protoporphyrin IX 99.3 1.2E-11 2.6E-16 112.6 10.3 90 79-172 61-160 (230)
73 TIGR02716 C20_methyl_CrtF C-20 99.3 2E-11 4.4E-16 116.4 11.8 101 78-182 146-258 (306)
74 PRK05134 bifunctional 3-demeth 99.3 3.6E-11 7.7E-16 110.0 12.9 99 79-180 46-153 (233)
75 KOG2361 Predicted methyltransf 99.3 2E-11 4.3E-16 109.7 10.2 135 47-182 36-187 (264)
76 TIGR00438 rrmJ cell division p 99.3 1.4E-11 3E-16 109.3 9.0 107 72-182 23-150 (188)
77 TIGR00091 tRNA (guanine-N(7)-) 99.3 6.1E-12 1.3E-16 112.3 6.7 100 81-180 16-134 (194)
78 PF05724 TPMT: Thiopurine S-me 99.3 2.7E-11 5.9E-16 109.9 10.8 133 45-180 1-157 (218)
79 TIGR00537 hemK_rel_arch HemK-r 99.3 3E-11 6.5E-16 106.2 10.3 101 80-182 18-144 (179)
80 PRK04266 fibrillarin; Provisio 99.3 5.3E-11 1.1E-15 108.6 12.1 97 78-180 69-178 (226)
81 PRK13942 protein-L-isoaspartat 99.2 6.2E-11 1.3E-15 107.3 10.8 93 78-179 73-177 (212)
82 PRK08287 cobalt-precorrin-6Y C 99.2 5.5E-11 1.2E-15 105.3 9.6 96 78-181 28-134 (187)
83 TIGR00080 pimt protein-L-isoas 99.2 9.4E-11 2E-15 106.2 10.9 93 78-179 74-178 (215)
84 TIGR01177 conserved hypothetic 99.2 9.4E-11 2E-15 113.0 11.1 105 77-181 178-297 (329)
85 KOG1271 Methyltransferases [Ge 99.2 4.9E-11 1.1E-15 102.8 6.9 139 44-182 15-185 (227)
86 PRK15001 SAM-dependent 23S rib 99.2 2.4E-10 5.2E-15 111.5 12.2 104 75-179 220-341 (378)
87 PRK14121 tRNA (guanine-N(7)-)- 99.2 7.6E-11 1.6E-15 114.7 8.6 98 81-178 122-235 (390)
88 PF13659 Methyltransf_26: Meth 99.2 2.5E-11 5.4E-16 98.7 4.3 99 82-180 1-117 (117)
89 PRK00377 cbiT cobalt-precorrin 99.2 2.4E-10 5.2E-15 102.2 10.6 98 78-181 37-148 (198)
90 TIGR00406 prmA ribosomal prote 99.1 2.7E-10 5.7E-15 107.9 10.4 97 79-183 157-264 (288)
91 PRK09489 rsmC 16S ribosomal RN 99.1 5.7E-10 1.2E-14 107.9 12.6 97 82-180 197-305 (342)
92 PF05148 Methyltransf_8: Hypot 99.1 2.5E-10 5.5E-15 101.2 8.9 103 66-180 57-160 (219)
93 PF03291 Pox_MCEL: mRNA cappin 99.1 2.6E-10 5.7E-15 109.6 9.7 103 81-183 62-191 (331)
94 PHA03411 putative methyltransf 99.1 6.5E-10 1.4E-14 103.3 11.8 132 46-178 29-183 (279)
95 PRK07402 precorrin-6B methylas 99.1 5.7E-10 1.2E-14 99.6 10.5 98 78-182 37-146 (196)
96 KOG1975 mRNA cap methyltransfe 99.1 3.4E-10 7.5E-15 105.5 9.1 116 67-182 103-241 (389)
97 PF05175 MTS: Methyltransferas 99.1 3.1E-10 6.8E-15 99.1 8.5 99 81-180 31-142 (170)
98 PRK14967 putative methyltransf 99.1 6.6E-10 1.4E-14 101.2 9.9 101 79-180 34-161 (223)
99 TIGR03534 RF_mod_PrmC protein- 99.1 1.2E-09 2.7E-14 100.6 11.5 97 81-178 87-217 (251)
100 PRK14968 putative methyltransf 99.1 1.2E-09 2.7E-14 95.9 11.0 100 80-180 22-150 (188)
101 cd02440 AdoMet_MTases S-adenos 99.1 7.1E-10 1.5E-14 85.9 8.1 92 84-177 1-103 (107)
102 PRK00312 pcm protein-L-isoaspa 99.1 1E-09 2.2E-14 99.1 10.2 93 78-179 75-176 (212)
103 PTZ00146 fibrillarin; Provisio 99.0 1.2E-09 2.6E-14 102.5 10.4 95 78-177 129-236 (293)
104 PRK00517 prmA ribosomal protei 99.0 6.9E-10 1.5E-14 102.9 8.2 94 79-182 117-217 (250)
105 PF01135 PCMT: Protein-L-isoas 99.0 8E-10 1.7E-14 99.6 7.1 100 71-180 63-174 (209)
106 PRK14966 unknown domain/N5-glu 99.0 2.9E-09 6.2E-14 104.5 11.5 105 75-179 245-382 (423)
107 PRK04457 spermidine synthase; 99.0 1.5E-09 3.2E-14 101.4 9.1 104 79-182 64-181 (262)
108 KOG3045 Predicted RNA methylas 99.0 3.1E-09 6.7E-14 96.4 10.7 102 66-180 165-266 (325)
109 TIGR03533 L3_gln_methyl protei 99.0 2.7E-09 5.8E-14 100.8 10.1 99 81-180 121-253 (284)
110 PRK10901 16S rRNA methyltransf 99.0 5.5E-09 1.2E-13 104.3 12.4 106 78-183 241-377 (427)
111 PRK14904 16S rRNA methyltransf 99.0 3.7E-09 8.1E-14 106.0 11.1 107 78-185 247-384 (445)
112 TIGR00536 hemK_fam HemK family 99.0 4.3E-09 9.2E-14 99.5 10.8 97 83-180 116-246 (284)
113 PF00891 Methyltransf_2: O-met 99.0 3.1E-09 6.8E-14 97.8 9.5 101 78-183 97-204 (241)
114 PRK14901 16S rRNA methyltransf 98.9 5.5E-09 1.2E-13 104.5 11.8 106 78-183 249-389 (434)
115 COG2242 CobL Precorrin-6B meth 98.9 7.5E-09 1.6E-13 90.4 10.7 100 78-184 31-141 (187)
116 PRK14903 16S rRNA methyltransf 98.9 4.7E-09 1E-13 104.8 10.6 110 76-185 232-373 (431)
117 PRK11805 N5-glutamine S-adenos 98.9 4.1E-09 9E-14 100.6 9.6 97 83-180 135-265 (307)
118 TIGR03704 PrmC_rel_meth putati 98.9 1.2E-08 2.6E-13 94.7 12.1 99 82-180 87-218 (251)
119 TIGR00446 nop2p NOL1/NOP2/sun 98.9 6.8E-09 1.5E-13 97.1 10.4 110 75-184 65-205 (264)
120 PRK13943 protein-L-isoaspartat 98.9 7.4E-09 1.6E-13 99.2 10.6 92 78-178 77-180 (322)
121 TIGR00563 rsmB ribosomal RNA s 98.9 1E-08 2.2E-13 102.3 11.5 107 78-184 235-374 (426)
122 PRK09328 N5-glutamine S-adenos 98.9 1.2E-08 2.6E-13 95.5 11.0 99 79-178 106-238 (275)
123 PF05219 DREV: DREV methyltran 98.9 1.1E-08 2.5E-13 93.6 9.8 93 82-179 95-189 (265)
124 COG2518 Pcm Protein-L-isoaspar 98.9 7.2E-09 1.6E-13 92.4 8.2 93 78-179 69-170 (209)
125 PHA03412 putative methyltransf 98.9 2.7E-08 5.8E-13 90.6 11.9 128 45-173 10-158 (241)
126 COG2264 PrmA Ribosomal protein 98.9 1E-08 2.2E-13 96.4 9.3 99 78-183 159-268 (300)
127 COG4123 Predicted O-methyltran 98.8 1.5E-08 3.2E-13 92.9 9.5 102 78-180 41-172 (248)
128 PF01739 CheR: CheR methyltran 98.8 9.3E-09 2E-13 91.8 7.7 96 82-178 32-175 (196)
129 PRK10611 chemotaxis methyltran 98.8 3E-08 6.6E-13 93.4 11.4 95 83-178 117-262 (287)
130 smart00650 rADc Ribosomal RNA 98.8 9.7E-09 2.1E-13 89.5 7.1 94 79-178 11-113 (169)
131 PF06080 DUF938: Protein of un 98.8 2.1E-08 4.6E-13 89.3 9.2 128 79-213 22-170 (204)
132 PRK14902 16S rRNA methyltransf 98.8 3.6E-08 7.7E-13 98.9 10.6 103 78-181 247-382 (444)
133 PRK00811 spermidine synthase; 98.8 2.1E-08 4.6E-13 94.7 8.4 99 80-178 75-191 (283)
134 PF06325 PrmA: Ribosomal prote 98.8 2E-08 4.3E-13 95.0 8.2 95 78-180 158-261 (295)
135 COG2813 RsmC 16S RNA G1207 met 98.8 8.5E-08 1.8E-12 89.8 11.8 96 82-179 159-267 (300)
136 PRK01544 bifunctional N5-gluta 98.7 3.2E-08 6.9E-13 100.7 9.5 96 82-178 139-269 (506)
137 KOG2940 Predicted methyltransf 98.7 6.3E-09 1.4E-13 92.9 3.8 100 81-183 72-179 (325)
138 COG1041 Predicted DNA modifica 98.7 4.7E-08 1E-12 93.2 9.4 107 73-179 189-311 (347)
139 PF05891 Methyltransf_PK: AdoM 98.7 3.5E-08 7.6E-13 88.3 7.5 96 83-179 57-162 (218)
140 PLN02781 Probable caffeoyl-CoA 98.7 4.6E-08 1E-12 89.9 8.5 102 71-178 58-178 (234)
141 COG2519 GCD14 tRNA(1-methylade 98.7 9.2E-08 2E-12 87.3 10.0 102 77-187 90-204 (256)
142 PF02390 Methyltransf_4: Putat 98.7 4.3E-08 9.3E-13 87.6 7.2 95 84-178 20-133 (195)
143 PF08704 GCD14: tRNA methyltra 98.6 1.3E-07 2.8E-12 87.2 8.4 105 75-187 34-155 (247)
144 PRK01581 speE spermidine synth 98.6 1.7E-07 3.7E-12 90.5 9.1 99 80-178 149-268 (374)
145 KOG1499 Protein arginine N-met 98.6 7.5E-08 1.6E-12 91.4 5.7 110 65-175 44-164 (346)
146 PRK11783 rlmL 23S rRNA m(2)G24 98.6 1.4E-07 3E-12 99.8 8.2 106 73-178 530-656 (702)
147 PRK15128 23S rRNA m(5)C1962 me 98.6 1.7E-07 3.6E-12 92.5 8.2 106 74-180 213-341 (396)
148 PF03141 Methyltransf_29: Puta 98.6 2.6E-08 5.6E-13 98.5 2.4 98 83-182 119-223 (506)
149 TIGR03439 methyl_EasF probable 98.6 1.1E-06 2.4E-11 84.1 13.5 104 74-178 69-197 (319)
150 PLN02366 spermidine synthase 98.5 2.7E-07 5.9E-12 88.0 8.7 99 80-178 90-206 (308)
151 PRK03612 spermidine synthase; 98.5 2E-07 4.3E-12 95.3 8.2 99 80-178 296-415 (521)
152 TIGR00417 speE spermidine synt 98.5 2.8E-07 6.1E-12 86.4 8.3 98 81-178 72-186 (270)
153 KOG2899 Predicted methyltransf 98.5 3.7E-07 8E-12 82.4 7.7 99 78-178 55-209 (288)
154 PRK03522 rumB 23S rRNA methylu 98.5 3.7E-07 8E-12 87.6 7.9 94 81-180 173-276 (315)
155 COG1352 CheR Methylase of chem 98.5 5.2E-07 1.1E-11 84.1 8.6 96 82-178 97-241 (268)
156 PRK13168 rumA 23S rRNA m(5)U19 98.5 6.4E-07 1.4E-11 89.9 9.9 93 79-178 295-400 (443)
157 KOG1661 Protein-L-isoaspartate 98.5 3.1E-07 6.7E-12 81.3 6.6 100 71-179 71-194 (237)
158 KOG1269 SAM-dependent methyltr 98.4 2.3E-07 4.9E-12 90.1 5.3 106 74-182 103-219 (364)
159 COG0500 SmtA SAM-dependent met 98.4 1.7E-06 3.7E-11 70.6 9.8 95 85-183 52-160 (257)
160 PRK04148 hypothetical protein; 98.4 2.4E-06 5.2E-11 71.3 10.5 96 81-184 16-115 (134)
161 PLN02476 O-methyltransferase 98.4 1.5E-06 3.3E-11 81.5 9.9 102 71-178 108-228 (278)
162 COG2890 HemK Methylase of poly 98.4 1.2E-06 2.5E-11 82.7 9.2 94 84-179 113-239 (280)
163 PRK10909 rsmD 16S rRNA m(2)G96 98.4 2E-06 4.4E-11 77.0 9.6 97 80-180 52-161 (199)
164 COG4122 Predicted O-methyltran 98.4 1.1E-06 2.4E-11 79.4 7.7 105 71-181 49-169 (219)
165 COG2521 Predicted archaeal met 98.3 4.9E-07 1.1E-11 81.3 4.8 118 66-183 117-250 (287)
166 COG2263 Predicted RNA methylas 98.3 1.5E-06 3.3E-11 76.0 7.5 66 78-146 42-116 (198)
167 COG0220 Predicted S-adenosylme 98.3 8.1E-07 1.8E-11 81.0 6.0 96 83-178 50-164 (227)
168 PF01596 Methyltransf_3: O-met 98.3 1.3E-06 2.8E-11 78.6 7.0 101 72-178 36-155 (205)
169 PF11968 DUF3321: Putative met 98.3 1.8E-06 3.8E-11 77.3 7.6 90 83-180 53-151 (219)
170 PLN02672 methionine S-methyltr 98.3 2.6E-06 5.7E-11 92.6 9.6 99 82-180 119-280 (1082)
171 TIGR00478 tly hemolysin TlyA f 98.3 3.1E-06 6.8E-11 77.3 8.5 87 80-178 74-171 (228)
172 PRK00274 ksgA 16S ribosomal RN 98.3 2.1E-06 4.6E-11 80.6 7.2 69 78-146 39-113 (272)
173 PRK14896 ksgA 16S ribosomal RN 98.3 2.6E-06 5.7E-11 79.4 7.7 69 78-148 26-101 (258)
174 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 7E-06 1.5E-10 76.1 10.3 102 80-181 55-202 (256)
175 PF01170 UPF0020: Putative RNA 98.2 2.8E-06 6.1E-11 74.8 7.2 103 75-178 22-150 (179)
176 PF12147 Methyltransf_20: Puta 98.2 1.2E-05 2.6E-10 74.9 11.6 98 81-178 135-249 (311)
177 COG3963 Phospholipid N-methylt 98.2 8.2E-06 1.8E-10 69.9 9.0 101 79-180 46-158 (194)
178 TIGR00479 rumA 23S rRNA (uraci 98.2 3.5E-06 7.5E-11 84.3 7.9 94 79-178 290-396 (431)
179 PF05185 PRMT5: PRMT5 arginine 98.2 2.3E-06 5.1E-11 85.6 6.5 92 82-175 187-294 (448)
180 PF10294 Methyltransf_16: Puta 98.2 4.5E-06 9.8E-11 73.1 7.2 98 79-180 43-158 (173)
181 KOG2904 Predicted methyltransf 98.1 1.5E-05 3.2E-10 73.4 10.0 101 81-181 148-288 (328)
182 PLN02823 spermine synthase 98.1 8E-06 1.7E-10 78.8 8.2 94 81-178 103-220 (336)
183 PLN02589 caffeoyl-CoA O-methyl 98.1 7.6E-06 1.6E-10 75.7 7.7 102 71-178 69-190 (247)
184 KOG3420 Predicted RNA methylas 98.1 2.8E-06 6E-11 71.1 4.2 68 81-148 48-124 (185)
185 KOG2352 Predicted spermine/spe 98.1 6.7E-06 1.5E-10 81.4 7.6 132 48-180 14-163 (482)
186 PRK01544 bifunctional N5-gluta 98.1 3.7E-06 8.1E-11 85.6 6.0 98 81-178 347-462 (506)
187 KOG3178 Hydroxyindole-O-methyl 98.1 8.6E-06 1.9E-10 77.6 8.0 95 82-180 178-277 (342)
188 TIGR02085 meth_trns_rumB 23S r 98.1 6.1E-06 1.3E-10 81.0 7.1 92 81-178 233-334 (374)
189 TIGR00755 ksgA dimethyladenosi 98.1 6.1E-06 1.3E-10 76.7 6.5 92 79-180 27-128 (253)
190 COG1092 Predicted SAM-dependen 98.1 8.4E-06 1.8E-10 79.9 7.2 110 72-181 208-339 (393)
191 PF02527 GidB: rRNA small subu 98.0 3.3E-05 7.2E-10 68.3 9.9 92 79-178 45-148 (184)
192 PTZ00338 dimethyladenosine tra 98.0 8.7E-06 1.9E-10 77.3 6.5 73 78-153 33-115 (294)
193 PF07942 N2227: N2227-like pro 98.0 1.9E-05 4.1E-10 73.7 8.2 126 46-174 10-198 (270)
194 COG0293 FtsJ 23S rRNA methylas 98.0 2.5E-05 5.4E-10 69.7 8.2 133 47-184 9-165 (205)
195 KOG1500 Protein arginine N-met 98.0 3E-05 6.5E-10 73.2 8.8 96 80-178 176-282 (517)
196 PF02384 N6_Mtase: N-6 DNA Met 97.9 4.4E-05 9.5E-10 72.9 9.3 133 48-180 4-185 (311)
197 PRK11933 yebU rRNA (cytosine-C 97.9 6.4E-05 1.4E-09 75.7 10.3 107 78-184 110-248 (470)
198 PF01728 FtsJ: FtsJ-like methy 97.9 8E-06 1.7E-10 71.7 2.6 111 69-183 6-144 (181)
199 TIGR00095 RNA methyltransferas 97.8 0.0001 2.2E-09 65.5 9.1 97 80-180 48-161 (189)
200 KOG4589 Cell division protein 97.8 3.7E-05 8E-10 67.1 5.8 103 78-184 66-190 (232)
201 PF01269 Fibrillarin: Fibrilla 97.8 0.00016 3.4E-09 65.2 9.4 98 78-180 70-180 (229)
202 PRK11727 23S rRNA mA1618 methy 97.7 5.9E-05 1.3E-09 72.3 6.6 69 81-149 114-200 (321)
203 PRK04338 N(2),N(2)-dimethylgua 97.7 9.3E-05 2E-09 72.8 8.0 89 82-177 58-157 (382)
204 PF02475 Met_10: Met-10+ like- 97.7 7E-05 1.5E-09 67.1 6.5 94 74-175 94-199 (200)
205 PF10672 Methyltrans_SAM: S-ad 97.7 3.2E-05 6.9E-10 72.9 4.1 110 71-180 113-240 (286)
206 COG0421 SpeE Spermidine syntha 97.7 0.00014 2.9E-09 68.6 8.1 99 77-177 73-189 (282)
207 PF08123 DOT1: Histone methyla 97.7 3E-05 6.5E-10 69.7 3.3 96 78-178 39-157 (205)
208 KOG3987 Uncharacterized conser 97.7 2.5E-05 5.3E-10 69.2 2.6 92 82-178 113-207 (288)
209 PF09243 Rsm22: Mitochondrial 97.7 0.00016 3.4E-09 68.1 8.0 97 82-183 34-144 (274)
210 KOG3191 Predicted N6-DNA-methy 97.6 0.00032 7E-09 61.1 8.5 101 82-183 44-173 (209)
211 KOG0820 Ribosomal RNA adenine 97.6 0.00012 2.7E-09 67.4 5.8 66 78-145 55-130 (315)
212 COG0144 Sun tRNA and rRNA cyto 97.5 0.00094 2E-08 65.2 11.9 113 74-186 149-296 (355)
213 KOG1663 O-methyltransferase [S 97.5 0.00072 1.6E-08 61.1 9.3 97 76-178 68-183 (237)
214 COG0030 KsgA Dimethyladenosine 97.5 0.00028 6.1E-09 65.4 6.8 75 78-153 27-109 (259)
215 PRK00536 speE spermidine synth 97.5 0.00063 1.4E-08 63.4 9.0 87 80-178 71-171 (262)
216 PRK00050 16S rRNA m(4)C1402 me 97.4 0.0002 4.2E-09 68.0 5.6 75 71-146 10-98 (296)
217 PF01564 Spermine_synth: Sperm 97.4 0.00035 7.5E-09 64.7 7.1 96 80-179 75-192 (246)
218 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.00098 2.1E-08 70.8 11.1 78 103-180 258-349 (702)
219 PF04672 Methyltransf_19: S-ad 97.4 0.00086 1.9E-08 62.3 9.3 100 83-182 70-194 (267)
220 TIGR02143 trmA_only tRNA (urac 97.4 0.00029 6.3E-09 68.7 6.0 89 83-179 199-312 (353)
221 COG0357 GidB Predicted S-adeno 97.4 0.0012 2.6E-08 59.7 9.3 91 82-179 68-169 (215)
222 PRK11760 putative 23S rRNA C24 97.3 0.00047 1E-08 66.1 6.3 85 79-171 209-296 (357)
223 COG4627 Uncharacterized protei 97.3 8.6E-05 1.9E-09 62.9 1.0 87 84-183 5-91 (185)
224 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00044 9.4E-09 67.7 6.0 90 83-180 208-322 (362)
225 COG2520 Predicted methyltransf 97.2 0.0019 4.1E-08 62.3 9.1 104 74-184 181-295 (341)
226 PF03602 Cons_hypoth95: Conser 97.2 0.0002 4.4E-09 63.3 2.3 106 73-181 33-156 (183)
227 PF03059 NAS: Nicotianamine sy 97.2 0.0038 8.2E-08 58.6 10.8 94 83-178 122-230 (276)
228 KOG2915 tRNA(1-methyladenosine 97.2 0.0033 7.2E-08 58.2 9.9 101 78-186 102-218 (314)
229 COG1889 NOP1 Fibrillarin-like 97.0 0.0034 7.4E-08 55.7 8.3 98 78-180 73-182 (231)
230 COG4076 Predicted RNA methylas 97.0 0.00076 1.6E-08 59.1 4.1 90 83-175 34-132 (252)
231 KOG1596 Fibrillarin and relate 97.0 0.004 8.6E-08 56.7 8.4 98 78-180 153-263 (317)
232 COG0116 Predicted N6-adenine-s 96.9 0.0054 1.2E-07 59.8 9.5 103 76-178 186-344 (381)
233 TIGR00308 TRM1 tRNA(guanine-26 96.9 0.0027 5.8E-08 62.3 7.2 90 82-178 45-147 (374)
234 TIGR02987 met_A_Alw26 type II 96.9 0.0027 5.9E-08 65.2 7.4 65 82-146 32-120 (524)
235 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.8 0.0031 6.8E-08 59.6 6.6 109 77-185 81-226 (283)
236 PF13679 Methyltransf_32: Meth 96.8 0.0045 9.7E-08 52.2 6.9 92 80-180 24-133 (141)
237 PF07091 FmrO: Ribosomal RNA m 96.7 0.006 1.3E-07 56.1 7.4 100 78-181 102-211 (251)
238 KOG1709 Guanidinoacetate methy 96.7 0.011 2.4E-07 53.0 8.7 95 80-177 100-205 (271)
239 COG0742 N6-adenine-specific me 96.6 0.012 2.6E-07 51.9 8.5 97 80-179 42-155 (187)
240 PF09445 Methyltransf_15: RNA 96.5 0.0012 2.5E-08 57.2 1.6 61 84-144 2-75 (163)
241 COG4262 Predicted spermidine s 96.5 0.0086 1.9E-07 57.6 7.4 97 78-178 286-407 (508)
242 PF00398 RrnaAD: Ribosomal RNA 96.4 0.0072 1.6E-07 56.4 6.5 86 79-170 28-123 (262)
243 KOG2798 Putative trehalase [Ca 96.4 0.0057 1.2E-07 57.7 5.5 126 49-177 111-295 (369)
244 PF03141 Methyltransf_29: Puta 96.2 0.0041 8.9E-08 62.2 3.8 96 83-178 367-467 (506)
245 COG2265 TrmA SAM-dependent met 96.2 0.021 4.6E-07 57.1 8.5 93 80-179 292-397 (432)
246 KOG3115 Methyltransferase-like 96.1 0.021 4.5E-07 50.9 7.3 96 81-178 60-183 (249)
247 PF06962 rRNA_methylase: Putat 96.1 0.022 4.7E-07 48.0 7.0 80 103-184 1-98 (140)
248 COG4798 Predicted methyltransf 96.1 0.023 5E-07 50.3 7.3 103 77-180 44-168 (238)
249 COG1189 Predicted rRNA methyla 96.1 0.021 4.6E-07 52.0 7.2 93 79-178 77-178 (245)
250 PF05958 tRNA_U5-meth_tr: tRNA 96.0 0.017 3.7E-07 56.4 6.6 48 84-131 199-255 (352)
251 COG5459 Predicted rRNA methyla 95.9 0.015 3.3E-07 55.7 5.8 99 83-182 115-229 (484)
252 COG1064 AdhP Zn-dependent alco 95.8 0.038 8.2E-07 53.3 8.3 93 77-180 162-261 (339)
253 PF13578 Methyltransf_24: Meth 95.7 0.0055 1.2E-07 48.6 1.8 89 86-178 1-105 (106)
254 TIGR01444 fkbM_fam methyltrans 95.7 0.016 3.4E-07 48.4 4.4 37 84-120 1-41 (143)
255 KOG2187 tRNA uracil-5-methyltr 95.5 0.022 4.8E-07 57.2 5.2 55 77-131 379-442 (534)
256 PLN02668 indole-3-acetate carb 95.1 0.079 1.7E-06 52.1 7.8 50 134-183 158-242 (386)
257 KOG2671 Putative RNA methylase 94.9 0.058 1.3E-06 51.7 6.1 135 46-180 171-356 (421)
258 COG3897 Predicted methyltransf 94.9 0.042 9.2E-07 48.7 4.7 90 80-176 78-176 (218)
259 KOG3201 Uncharacterized conser 94.9 0.013 2.9E-07 50.2 1.5 100 81-183 29-145 (201)
260 PF04816 DUF633: Family of unk 94.8 0.074 1.6E-06 47.8 6.3 88 85-178 1-101 (205)
261 KOG0024 Sorbitol dehydrogenase 94.7 0.26 5.6E-06 47.1 9.7 100 76-184 164-279 (354)
262 KOG2730 Methylase [General fun 94.6 0.022 4.7E-07 51.3 2.3 66 81-146 94-173 (263)
263 PRK09424 pntA NAD(P) transhydr 94.3 0.22 4.8E-06 50.9 9.2 97 80-179 163-286 (509)
264 KOG1122 tRNA and rRNA cytosine 94.2 0.22 4.7E-06 49.1 8.3 104 79-183 239-376 (460)
265 PF06859 Bin3: Bicoid-interact 94.0 0.035 7.6E-07 44.6 2.1 41 138-178 1-44 (110)
266 TIGR00006 S-adenosyl-methyltra 93.9 0.13 2.8E-06 49.1 6.1 75 71-146 11-100 (305)
267 PF05971 Methyltransf_10: Prot 93.9 0.11 2.3E-06 49.4 5.4 82 70-151 87-190 (299)
268 cd08283 FDH_like_1 Glutathione 93.8 0.28 6.2E-06 48.1 8.6 99 77-178 180-306 (386)
269 cd08254 hydroxyacyl_CoA_DH 6-h 93.6 0.42 9.2E-06 45.2 9.3 94 78-180 162-265 (338)
270 COG4301 Uncharacterized conser 93.5 0.48 1E-05 43.7 8.6 104 74-179 71-194 (321)
271 KOG0822 Protein kinase inhibit 93.5 0.11 2.4E-06 52.5 4.9 94 83-177 369-477 (649)
272 PF03492 Methyltransf_7: SAM d 93.4 0.39 8.4E-06 46.5 8.6 103 81-183 16-188 (334)
273 PF07757 AdoMet_MTase: Predict 93.2 0.027 5.8E-07 45.1 0.1 29 81-109 58-88 (112)
274 PF03269 DUF268: Caenorhabditi 93.0 0.08 1.7E-06 45.5 2.7 48 136-183 61-116 (177)
275 PRK09880 L-idonate 5-dehydroge 92.9 0.39 8.5E-06 46.2 7.8 92 79-179 167-267 (343)
276 COG0286 HsdM Type I restrictio 92.7 1.1 2.3E-05 45.8 11.0 134 48-181 144-329 (489)
277 COG2384 Predicted SAM-dependen 92.7 0.5 1.1E-05 42.7 7.5 98 75-177 10-119 (226)
278 PF11599 AviRa: RRNA methyltra 92.3 0.37 8.1E-06 43.4 6.1 93 83-176 53-212 (246)
279 KOG4058 Uncharacterized conser 92.3 0.87 1.9E-05 38.7 7.9 103 70-181 62-175 (199)
280 PF04989 CmcI: Cephalosporin h 91.8 0.37 7.9E-06 43.3 5.6 104 74-182 26-151 (206)
281 COG1063 Tdh Threonine dehydrog 91.7 1.5 3.2E-05 42.7 10.2 95 80-183 167-274 (350)
282 KOG2198 tRNA cytosine-5-methyl 91.3 1.1 2.3E-05 43.7 8.5 106 78-183 152-301 (375)
283 cd00401 AdoHcyase S-adenosyl-L 91.2 0.72 1.6E-05 45.9 7.6 98 67-178 187-289 (413)
284 KOG1562 Spermidine synthase [A 91.0 0.8 1.7E-05 43.2 7.0 100 79-178 119-236 (337)
285 KOG2920 Predicted methyltransf 90.7 0.26 5.5E-06 46.2 3.5 95 80-177 115-233 (282)
286 KOG2793 Putative N2,N2-dimethy 90.6 1.1 2.3E-05 41.5 7.5 99 81-182 86-203 (248)
287 TIGR00561 pntA NAD(P) transhyd 90.5 0.54 1.2E-05 48.0 6.0 92 81-175 163-281 (511)
288 KOG1099 SAM-dependent methyltr 90.1 0.23 5.1E-06 45.1 2.7 96 83-182 43-167 (294)
289 cd08230 glucose_DH Glucose deh 89.9 1.5 3.3E-05 42.3 8.5 91 79-180 170-271 (355)
290 TIGR02822 adh_fam_2 zinc-bindi 89.0 2.3 4.9E-05 40.7 8.9 91 77-179 161-255 (329)
291 KOG2539 Mitochondrial/chloropl 88.7 0.63 1.4E-05 46.5 4.7 100 82-182 201-318 (491)
292 PF04445 SAM_MT: Putative SAM- 88.3 0.4 8.6E-06 43.9 2.9 73 78-150 70-163 (234)
293 PF03686 UPF0146: Uncharacteri 88.3 0.62 1.3E-05 38.5 3.7 104 69-184 1-108 (127)
294 PRK10742 putative methyltransf 88.1 1.3 2.8E-05 41.0 6.2 73 78-150 83-176 (250)
295 PF01795 Methyltransf_5: MraW 88.0 0.86 1.9E-05 43.6 5.0 74 70-144 10-99 (310)
296 cd05188 MDR Medium chain reduc 87.2 3.3 7.2E-05 37.3 8.4 93 78-180 131-234 (271)
297 PRK13699 putative methylase; P 87.1 0.77 1.7E-05 41.9 4.1 55 123-177 3-71 (227)
298 PF03514 GRAS: GRAS domain fam 86.5 9.4 0.0002 37.6 11.6 95 81-175 110-241 (374)
299 cd08237 ribitol-5-phosphate_DH 86.3 2.4 5.2E-05 40.8 7.2 91 79-179 161-257 (341)
300 COG3129 Predicted SAM-dependen 85.8 2.9 6.2E-05 38.3 6.8 84 67-150 59-165 (292)
301 PRK11524 putative methyltransf 85.6 0.65 1.4E-05 43.8 2.9 57 122-178 9-80 (284)
302 TIGR03451 mycoS_dep_FDH mycoth 85.6 4.2 9.1E-05 39.2 8.6 93 77-179 172-277 (358)
303 COG1867 TRM1 N2,N2-dimethylgua 85.3 1.8 3.9E-05 42.1 5.7 91 82-179 53-155 (380)
304 PF02005 TRM: N2,N2-dimethylgu 85.3 1.2 2.7E-05 43.8 4.7 91 81-178 49-154 (377)
305 PF11899 DUF3419: Protein of u 85.1 1.3 2.8E-05 43.7 4.8 61 121-182 276-338 (380)
306 cd08234 threonine_DH_like L-th 84.9 5 0.00011 37.9 8.7 94 77-180 155-259 (334)
307 PF01555 N6_N4_Mtase: DNA meth 84.9 1.1 2.4E-05 39.7 4.0 41 79-119 189-231 (231)
308 cd08281 liver_ADH_like1 Zinc-d 84.8 4 8.6E-05 39.7 8.1 93 78-179 188-291 (371)
309 cd08245 CAD Cinnamyl alcohol d 84.6 6.2 0.00013 37.2 9.1 93 78-179 159-257 (330)
310 COG3510 CmcI Cephalosporin hyd 84.4 8 0.00017 34.5 8.7 108 72-183 61-185 (237)
311 KOG2651 rRNA adenine N-6-methy 84.4 1.4 3.1E-05 43.0 4.5 40 80-119 152-194 (476)
312 cd08232 idonate-5-DH L-idonate 84.4 5.5 0.00012 37.8 8.7 89 81-179 165-263 (339)
313 TIGR03366 HpnZ_proposed putati 84.4 3 6.5E-05 38.8 6.8 90 80-179 119-219 (280)
314 PF00107 ADH_zinc_N: Zinc-bind 83.7 3.3 7.2E-05 33.4 6.0 73 99-181 12-92 (130)
315 cd08255 2-desacetyl-2-hydroxye 83.6 4.4 9.5E-05 37.2 7.5 92 77-178 93-190 (277)
316 PF02254 TrkA_N: TrkA-N domain 83.5 4.9 0.00011 31.8 6.8 76 100-181 20-99 (116)
317 PHA01634 hypothetical protein 83.4 5.5 0.00012 33.1 6.9 40 81-120 28-70 (156)
318 PRK11524 putative methyltransf 82.9 2 4.4E-05 40.4 5.0 42 79-120 206-249 (284)
319 PTZ00357 methyltransferase; Pr 82.4 3.1 6.8E-05 43.8 6.3 89 84-173 703-830 (1072)
320 cd08239 THR_DH_like L-threonin 80.8 7.4 0.00016 37.0 8.1 92 78-179 160-263 (339)
321 TIGR00497 hsdM type I restrict 80.3 10 0.00022 38.8 9.3 132 47-180 172-357 (501)
322 PRK13699 putative methylase; P 80.1 3.2 7E-05 37.8 5.0 50 71-120 152-204 (227)
323 cd00315 Cyt_C5_DNA_methylase C 79.9 3.3 7.1E-05 38.9 5.2 63 84-146 2-70 (275)
324 PLN02827 Alcohol dehydrogenase 79.9 7.3 0.00016 38.1 7.9 92 77-178 189-295 (378)
325 PLN02740 Alcohol dehydrogenase 79.8 10 0.00022 37.1 8.8 93 77-179 194-301 (381)
326 PRK10309 galactitol-1-phosphat 79.6 9.9 0.00021 36.3 8.6 92 78-179 157-261 (347)
327 COG1255 Uncharacterized protei 79.4 4.4 9.6E-05 32.9 4.9 90 82-183 14-107 (129)
328 PLN03154 putative allyl alcoho 79.1 15 0.00033 35.4 9.7 92 77-178 154-258 (348)
329 TIGR02825 B4_12hDH leukotriene 78.9 14 0.0003 34.9 9.3 92 77-178 134-237 (325)
330 TIGR00936 ahcY adenosylhomocys 78.6 6.9 0.00015 38.9 7.2 97 68-178 181-282 (406)
331 KOG1501 Arginine N-methyltrans 78.6 2.4 5.2E-05 42.2 3.8 38 83-120 68-108 (636)
332 TIGR03201 dearomat_had 6-hydro 78.5 12 0.00025 36.0 8.7 93 77-179 162-273 (349)
333 KOG2352 Predicted spermine/spe 78.2 7 0.00015 39.5 7.0 104 80-183 294-421 (482)
334 TIGR01202 bchC 2-desacetyl-2-h 77.5 5.7 0.00012 37.5 6.1 85 80-179 143-232 (308)
335 KOG1253 tRNA methyltransferase 77.4 0.97 2.1E-05 45.5 0.8 96 76-178 104-216 (525)
336 PLN02494 adenosylhomocysteinas 76.6 5.9 0.00013 40.1 6.1 101 65-178 237-341 (477)
337 PF01861 DUF43: Protein of unk 76.2 28 0.0006 32.2 9.8 95 80-178 43-149 (243)
338 TIGR02818 adh_III_F_hyde S-(hy 75.5 15 0.00032 35.7 8.6 93 77-179 181-288 (368)
339 cd08261 Zn_ADH7 Alcohol dehydr 75.4 17 0.00038 34.3 8.9 94 77-180 155-260 (337)
340 cd08242 MDR_like Medium chain 74.8 16 0.00036 34.1 8.5 89 78-177 152-244 (319)
341 PRK05476 S-adenosyl-L-homocyst 74.5 8.1 0.00018 38.7 6.5 85 79-177 209-298 (425)
342 COG0275 Predicted S-adenosylme 74.5 5.9 0.00013 37.7 5.1 59 72-131 15-84 (314)
343 PLN02586 probable cinnamyl alc 72.8 12 0.00027 36.1 7.3 91 79-178 181-278 (360)
344 PRK03562 glutathione-regulated 72.5 16 0.00036 38.4 8.5 92 83-180 401-500 (621)
345 cd08295 double_bond_reductase_ 72.3 23 0.0005 33.6 8.9 92 77-178 147-251 (338)
346 cd05285 sorbitol_DH Sorbitol d 71.6 23 0.0005 33.7 8.8 95 76-179 157-266 (343)
347 TIGR00027 mthyl_TIGR00027 meth 71.2 25 0.00054 32.7 8.6 97 83-181 83-200 (260)
348 cd08231 MDR_TM0436_like Hypoth 71.2 30 0.00065 33.1 9.5 91 78-178 174-280 (361)
349 PRK03659 glutathione-regulated 70.9 14 0.00031 38.7 7.6 93 83-181 401-501 (601)
350 cd08300 alcohol_DH_class_III c 70.8 23 0.0005 34.2 8.7 93 77-179 182-289 (368)
351 cd08236 sugar_DH NAD(P)-depend 70.7 22 0.00048 33.7 8.4 94 77-179 155-259 (343)
352 cd08238 sorbose_phosphate_red 70.7 29 0.00062 34.3 9.4 92 78-178 172-288 (410)
353 cd08294 leukotriene_B4_DH_like 70.6 32 0.0007 32.1 9.5 91 77-178 139-241 (329)
354 PLN02178 cinnamyl-alcohol dehy 70.4 14 0.00031 36.1 7.1 91 80-179 177-274 (375)
355 cd05278 FDH_like Formaldehyde 70.2 16 0.00034 34.6 7.3 93 77-178 163-267 (347)
356 cd08277 liver_alcohol_DH_like 69.3 25 0.00054 33.9 8.5 92 78-179 181-287 (365)
357 cd08301 alcohol_DH_plants Plan 69.0 23 0.0005 34.2 8.2 95 77-180 183-291 (369)
358 PF02636 Methyltransf_28: Puta 69.0 4.6 0.0001 37.2 3.1 67 83-153 20-110 (252)
359 PRK05225 ketol-acid reductoiso 67.8 9.1 0.0002 38.7 5.0 86 81-177 35-130 (487)
360 cd08298 CAD2 Cinnamyl alcohol 67.3 37 0.0008 31.8 9.1 90 77-178 163-256 (329)
361 TIGR02819 fdhA_non_GSH formald 67.0 39 0.00085 33.2 9.5 103 77-179 181-300 (393)
362 KOG1098 Putative SAM-dependent 66.5 3.7 7.9E-05 42.6 2.0 103 77-183 40-163 (780)
363 PF02558 ApbA: Ketopantoate re 65.2 9.5 0.00021 31.7 4.1 87 85-178 1-101 (151)
364 cd05281 TDH Threonine dehydrog 65.1 47 0.001 31.5 9.4 92 78-178 160-262 (341)
365 COG1565 Uncharacterized conser 64.9 8.5 0.00018 37.6 4.0 40 81-120 77-128 (370)
366 PRK10669 putative cation:proto 64.8 32 0.00069 35.6 8.7 90 83-178 418-515 (558)
367 TIGR00692 tdh L-threonine 3-de 64.4 53 0.0012 31.1 9.6 94 77-179 157-262 (340)
368 PRK01747 mnmC bifunctional tRN 64.3 16 0.00034 38.7 6.4 55 123-178 150-206 (662)
369 KOG2078 tRNA modification enzy 63.0 7.7 0.00017 38.6 3.4 43 78-120 246-290 (495)
370 cd08296 CAD_like Cinnamyl alco 62.6 43 0.00093 31.7 8.6 93 78-179 160-260 (333)
371 PF11312 DUF3115: Protein of u 62.4 10 0.00022 36.3 4.0 61 121-181 176-245 (315)
372 PRK06522 2-dehydropantoate 2-r 62.0 36 0.00079 31.7 7.9 88 84-177 2-99 (304)
373 cd08285 NADP_ADH NADP(H)-depen 59.7 57 0.0012 31.0 9.0 92 77-178 162-266 (351)
374 COG2933 Predicted SAM-dependen 58.9 35 0.00075 32.1 6.7 86 78-171 208-296 (358)
375 PF10017 Methyltransf_33: Hist 57.5 16 0.00035 30.0 4.1 41 307-348 85-125 (127)
376 cd08293 PTGR2 Prostaglandin re 57.3 76 0.0016 30.0 9.3 91 78-178 149-254 (345)
377 cd08274 MDR9 Medium chain dehy 57.2 64 0.0014 30.5 8.8 90 78-178 174-273 (350)
378 PF10354 DUF2431: Domain of un 56.5 34 0.00074 29.5 6.1 64 118-183 50-130 (166)
379 cd08286 FDH_like_ADH2 formalde 55.5 78 0.0017 29.9 9.1 93 77-178 162-266 (345)
380 cd08243 quinone_oxidoreductase 55.1 1E+02 0.0022 28.4 9.6 90 78-178 139-238 (320)
381 COG0686 Ald Alanine dehydrogen 53.5 19 0.00042 34.5 4.3 90 83-175 169-265 (371)
382 cd08263 Zn_ADH10 Alcohol dehyd 52.2 82 0.0018 30.2 8.7 93 78-179 184-288 (367)
383 COG1062 AdhC Zn-dependent alco 52.2 68 0.0015 31.3 7.7 96 78-182 182-289 (366)
384 cd08233 butanediol_DH_like (2R 51.9 1.3E+02 0.0027 28.6 9.9 93 77-179 168-273 (351)
385 PRK09496 trkA potassium transp 50.8 1E+02 0.0022 30.6 9.3 91 84-180 2-101 (453)
386 PRK08306 dipicolinate synthase 50.6 47 0.001 31.5 6.6 86 81-177 151-240 (296)
387 cd08241 QOR1 Quinone oxidoredu 50.1 1.3E+02 0.0028 27.5 9.4 93 77-179 135-239 (323)
388 cd08279 Zn_ADH_class_III Class 50.0 60 0.0013 31.2 7.4 93 77-179 178-283 (363)
389 PLN02514 cinnamyl-alcohol dehy 49.7 70 0.0015 30.8 7.8 91 79-178 178-275 (357)
390 KOG3924 Putative protein methy 49.7 25 0.00055 34.7 4.5 96 78-177 189-307 (419)
391 PRK05708 2-dehydropantoate 2-r 49.6 1E+02 0.0022 29.2 8.7 90 83-178 3-104 (305)
392 cd08270 MDR4 Medium chain dehy 49.5 1.4E+02 0.0031 27.2 9.7 87 81-179 132-223 (305)
393 cd08284 FDH_like_2 Glutathione 49.3 1E+02 0.0022 29.0 8.7 92 78-178 164-266 (344)
394 PF04072 LCM: Leucine carboxyl 49.1 85 0.0019 27.2 7.5 81 82-164 79-182 (183)
395 PTZ00075 Adenosylhomocysteinas 48.8 46 0.001 33.9 6.4 85 80-178 252-341 (476)
396 PF05050 Methyltransf_21: Meth 48.2 18 0.0004 30.0 3.1 34 87-120 1-42 (167)
397 COG0604 Qor NADPH:quinone redu 47.8 94 0.002 29.8 8.2 96 76-181 137-244 (326)
398 PRK13403 ketol-acid reductoiso 47.8 43 0.00094 32.4 5.7 86 81-177 15-105 (335)
399 COG0287 TyrA Prephenate dehydr 47.7 56 0.0012 30.8 6.5 88 83-178 4-97 (279)
400 PF02153 PDH: Prephenate dehyd 47.4 32 0.00069 31.8 4.7 67 99-175 9-76 (258)
401 PRK07502 cyclohexadienyl dehyd 47.2 69 0.0015 30.2 7.2 84 83-175 7-97 (307)
402 PRK05396 tdh L-threonine 3-deh 46.9 1E+02 0.0022 29.2 8.3 91 80-180 162-265 (341)
403 cd05283 CAD1 Cinnamyl alcohol 46.6 77 0.0017 30.0 7.4 91 79-179 167-264 (337)
404 cd08265 Zn_ADH3 Alcohol dehydr 46.5 1.6E+02 0.0034 28.6 9.8 93 77-178 199-307 (384)
405 PRK06182 short chain dehydroge 46.5 77 0.0017 28.9 7.2 69 82-150 3-86 (273)
406 PRK10083 putative oxidoreducta 46.4 1.1E+02 0.0024 28.7 8.6 92 78-179 157-260 (339)
407 PF01555 N6_N4_Mtase: DNA meth 46.4 15 0.00033 32.3 2.4 26 157-182 35-60 (231)
408 PLN02702 L-idonate 5-dehydroge 46.4 1.2E+02 0.0026 29.1 8.8 93 77-178 177-285 (364)
409 PRK08324 short chain dehydroge 46.2 75 0.0016 33.8 7.9 98 81-178 421-557 (681)
410 cd08266 Zn_ADH_like1 Alcohol d 44.7 1.4E+02 0.0031 27.5 8.9 91 77-178 162-265 (342)
411 PF11899 DUF3419: Protein of u 44.3 46 0.00099 32.9 5.5 50 71-120 25-76 (380)
412 TIGR00872 gnd_rel 6-phosphoglu 44.0 56 0.0012 30.8 5.9 87 84-178 2-92 (298)
413 COG0275 Predicted S-adenosylme 43.9 26 0.00056 33.4 3.5 25 157-181 223-247 (314)
414 cd08246 crotonyl_coA_red croto 43.0 1.5E+02 0.0033 28.7 9.1 91 78-179 190-316 (393)
415 PRK12921 2-dehydropantoate 2-r 42.9 1.1E+02 0.0025 28.4 7.9 87 84-177 2-101 (305)
416 PRK05786 fabG 3-ketoacyl-(acyl 42.4 1.3E+02 0.0027 26.6 7.8 99 81-179 4-136 (238)
417 cd05289 MDR_like_2 alcohol deh 42.3 1.9E+02 0.0042 26.1 9.3 91 78-179 141-239 (309)
418 PRK07417 arogenate dehydrogena 42.2 98 0.0021 28.8 7.3 83 84-177 2-89 (279)
419 TIGR00006 S-adenosyl-methyltra 42.1 28 0.0006 33.3 3.5 25 157-181 219-243 (305)
420 PF00145 DNA_methylase: C-5 cy 42.0 24 0.00052 33.1 3.1 98 84-183 2-116 (335)
421 cd08278 benzyl_alcohol_DH Benz 41.2 1.1E+02 0.0024 29.4 7.7 92 78-178 183-285 (365)
422 PRK09422 ethanol-active dehydr 40.7 2.3E+02 0.005 26.5 9.7 95 76-179 157-262 (338)
423 cd08240 6_hydroxyhexanoate_dh_ 39.6 2E+02 0.0043 27.2 9.1 91 78-178 172-274 (350)
424 cd08297 CAD3 Cinnamyl alcohol 38.8 2.8E+02 0.0061 25.9 10.0 93 78-180 162-267 (341)
425 cd08287 FDH_like_ADH3 formalde 38.1 1.9E+02 0.0042 27.2 8.7 94 77-179 164-269 (345)
426 cd05284 arabinose_DH_like D-ar 38.1 1.9E+02 0.0042 27.0 8.8 94 78-180 164-268 (340)
427 PF01795 Methyltransf_5: MraW 37.7 28 0.00061 33.4 2.8 25 157-181 220-244 (310)
428 COG0569 TrkA K+ transport syst 37.6 68 0.0015 29.1 5.2 62 84-145 2-73 (225)
429 TIGR02817 adh_fam_1 zinc-bindi 37.5 2.7E+02 0.0059 25.9 9.7 87 82-177 149-246 (336)
430 PRK00050 16S rRNA m(4)C1402 me 37.3 37 0.0008 32.3 3.5 25 157-181 215-239 (296)
431 COG1748 LYS9 Saccharopine dehy 37.2 72 0.0016 31.6 5.6 64 83-146 2-76 (389)
432 PTZ00354 alcohol dehydrogenase 37.1 3.1E+02 0.0067 25.3 10.0 91 77-178 136-240 (334)
433 PF03446 NAD_binding_2: NAD bi 36.7 43 0.00094 28.4 3.6 83 84-175 3-91 (163)
434 cd08267 MDR1 Medium chain dehy 36.2 2.9E+02 0.0062 25.2 9.5 94 78-180 140-242 (319)
435 cd08235 iditol_2_DH_like L-idi 35.4 2E+02 0.0043 27.0 8.4 92 78-178 162-265 (343)
436 cd05286 QOR2 Quinone oxidoredu 35.4 2.5E+02 0.0053 25.4 8.8 93 77-179 132-236 (320)
437 PF07101 DUF1363: Protein of u 35.0 14 0.00031 28.8 0.2 12 85-96 6-17 (124)
438 PRK05562 precorrin-2 dehydroge 35.0 1.3E+02 0.0028 27.4 6.6 86 81-177 24-115 (223)
439 PRK09496 trkA potassium transp 34.6 2.5E+02 0.0054 27.8 9.2 65 81-145 230-304 (453)
440 KOG0022 Alcohol dehydrogenase, 34.3 63 0.0014 31.2 4.5 92 77-178 188-294 (375)
441 KOG1227 Putative methyltransfe 34.3 33 0.00072 32.8 2.6 92 78-177 191-295 (351)
442 COG5379 BtaA S-adenosylmethion 34.3 68 0.0015 30.7 4.6 69 111-180 296-368 (414)
443 COG1893 ApbA Ketopantoate redu 34.1 2E+02 0.0044 27.3 8.1 92 83-181 1-104 (307)
444 COG0541 Ffh Signal recognition 33.9 2.4E+02 0.0052 28.5 8.6 104 81-186 99-229 (451)
445 cd08269 Zn_ADH9 Alcohol dehydr 33.6 2.7E+02 0.0059 25.4 8.9 96 76-180 124-231 (312)
446 PLN02688 pyrroline-5-carboxyla 33.6 1.6E+02 0.0034 27.0 7.1 84 84-178 2-94 (266)
447 PF06460 NSP13: Coronavirus NS 33.5 1.7E+02 0.0037 27.5 7.0 103 70-178 46-169 (299)
448 PRK11064 wecC UDP-N-acetyl-D-m 33.5 1.5E+02 0.0032 29.5 7.3 95 83-177 4-118 (415)
449 COG3315 O-Methyltransferase in 33.5 2.5E+02 0.0055 26.7 8.5 96 82-179 93-210 (297)
450 PF10237 N6-adenineMlase: Prob 33.1 2.2E+02 0.0048 24.5 7.4 95 79-180 23-125 (162)
451 PLN02256 arogenate dehydrogena 33.0 2E+02 0.0044 27.3 7.9 89 81-180 35-128 (304)
452 cd08262 Zn_ADH8 Alcohol dehydr 32.9 2.5E+02 0.0054 26.3 8.6 94 77-179 157-265 (341)
453 PRK08507 prephenate dehydrogen 32.7 1.2E+02 0.0027 28.0 6.3 82 84-177 2-89 (275)
454 cd08289 MDR_yhfp_like Yhfp put 32.4 2.4E+02 0.0053 26.1 8.4 89 80-179 145-244 (326)
455 KOG1252 Cystathionine beta-syn 32.3 42 0.00091 32.5 3.0 32 84-115 214-253 (362)
456 PRK08229 2-dehydropantoate 2-r 32.2 2E+02 0.0044 27.3 7.9 86 83-175 3-104 (341)
457 PRK08265 short chain dehydroge 32.2 1.7E+02 0.0036 26.5 7.0 67 82-148 6-90 (261)
458 cd01208 X11 X11 Phosphotyrosin 31.9 26 0.00056 30.1 1.3 23 309-331 118-140 (156)
459 PRK09072 short chain dehydroge 31.9 1.8E+02 0.0039 26.2 7.2 68 82-149 5-91 (263)
460 TIGR00518 alaDH alanine dehydr 31.7 37 0.00081 33.3 2.7 92 82-177 167-266 (370)
461 cd05288 PGDH Prostaglandin deh 31.7 3.3E+02 0.0072 25.1 9.2 91 78-178 142-244 (329)
462 cd05279 Zn_ADH1 Liver alcohol 31.2 2.1E+02 0.0045 27.5 7.8 92 77-178 179-285 (365)
463 cd08252 AL_MDR Arginate lyase 31.0 2.6E+02 0.0056 26.0 8.3 88 82-178 150-248 (336)
464 PRK12490 6-phosphogluconate de 31.0 1.3E+02 0.0028 28.3 6.2 88 84-178 2-93 (299)
465 cd05213 NAD_bind_Glutamyl_tRNA 30.7 1.6E+02 0.0034 28.1 6.7 91 81-179 177-273 (311)
466 PF02826 2-Hacid_dh_C: D-isome 30.2 29 0.00063 30.0 1.5 84 80-177 34-125 (178)
467 PRK00094 gpsA NAD(P)H-dependen 30.1 1.8E+02 0.0038 27.3 7.0 87 84-176 3-103 (325)
468 PRK09599 6-phosphogluconate de 29.7 1.5E+02 0.0032 27.9 6.3 88 84-178 2-93 (301)
469 PF05430 Methyltransf_30: S-ad 29.6 13 0.00029 30.5 -0.7 41 137-178 49-90 (124)
470 PF06016 Reovirus_L2: Reovirus 29.3 37 0.00081 38.4 2.3 98 81-179 822-928 (1289)
471 PF02086 MethyltransfD12: D12 29.2 95 0.0021 28.1 4.8 49 69-118 9-59 (260)
472 PF05206 TRM13: Methyltransfer 28.9 48 0.001 30.9 2.8 34 79-112 16-58 (259)
473 PF14871 GHL6: Hypothetical gl 28.6 84 0.0018 26.1 3.9 55 71-125 4-61 (132)
474 TIGR00675 dcm DNA-methyltransf 28.2 57 0.0012 31.2 3.2 60 85-144 1-65 (315)
475 PF06690 DUF1188: Protein of u 27.4 2E+02 0.0044 26.5 6.3 101 71-187 32-135 (252)
476 PRK03369 murD UDP-N-acetylmura 27.0 99 0.0022 31.4 4.9 72 76-149 6-81 (488)
477 PF01206 TusA: Sulfurtransfera 26.9 1.4E+02 0.003 21.2 4.4 42 309-351 29-70 (70)
478 cd08273 MDR8 Medium chain dehy 26.4 5.1E+02 0.011 23.8 10.1 91 77-178 135-233 (331)
479 PRK06249 2-dehydropantoate 2-r 26.4 2.9E+02 0.0062 26.1 7.7 87 83-177 6-105 (313)
480 PF07279 DUF1442: Protein of u 26.4 1.9E+02 0.004 26.3 5.9 100 71-180 28-150 (218)
481 cd08282 PFDH_like Pseudomonas 25.8 3.5E+02 0.0076 26.0 8.4 100 78-179 173-286 (375)
482 PRK12742 oxidoreductase; Provi 25.5 4.5E+02 0.0098 22.9 8.5 97 82-178 6-131 (237)
483 cd08291 ETR_like_1 2-enoyl thi 25.3 4.4E+02 0.0094 24.5 8.8 71 99-179 166-243 (324)
484 PRK06500 short chain dehydroge 25.2 3.5E+02 0.0075 23.8 7.8 67 82-148 6-90 (249)
485 PRK06701 short chain dehydroge 24.5 2.5E+02 0.0054 26.0 6.8 98 81-178 45-181 (290)
486 PRK05993 short chain dehydroge 24.5 1.7E+02 0.0038 26.7 5.7 67 82-148 4-86 (277)
487 KOG2872 Uroporphyrinogen decar 24.4 3.2E+02 0.0069 26.1 7.2 80 49-128 208-300 (359)
488 KOG0023 Alcohol dehydrogenase, 24.3 3.1E+02 0.0067 26.7 7.2 93 78-181 178-282 (360)
489 cd08244 MDR_enoyl_red Possible 24.1 5.6E+02 0.012 23.4 9.3 91 78-179 139-242 (324)
490 TIGR01751 crot-CoA-red crotony 23.8 5.2E+02 0.011 25.1 9.2 92 78-180 186-312 (398)
491 PRK08655 prephenate dehydrogen 23.8 1.5E+02 0.0032 29.8 5.4 86 84-180 2-93 (437)
492 PRK05867 short chain dehydroge 23.6 3.4E+02 0.0073 24.2 7.4 69 81-149 8-97 (253)
493 PLN02712 arogenate dehydrogena 23.2 2.2E+02 0.0048 30.4 6.8 86 83-179 53-143 (667)
494 cd08292 ETR_like_2 2-enoyl thi 23.1 4.9E+02 0.011 23.9 8.6 91 78-179 136-239 (324)
495 PF02013 CBM_10: Cellulose or 23.1 42 0.0009 21.4 0.8 9 340-348 28-36 (36)
496 cd08260 Zn_ADH6 Alcohol dehydr 22.9 3.1E+02 0.0068 25.7 7.3 92 78-178 162-264 (345)
497 cd01842 SGNH_hydrolase_like_5 22.6 1.7E+02 0.0037 25.8 4.8 45 134-178 46-99 (183)
498 COG5379 BtaA S-adenosylmethion 22.6 1.3E+02 0.0028 28.8 4.3 43 78-120 60-104 (414)
499 PRK12367 short chain dehydroge 22.4 3.8E+02 0.0083 24.2 7.5 69 81-149 13-90 (245)
500 cd08250 Mgc45594_like Mgc45594 22.1 6.3E+02 0.014 23.3 9.8 92 77-178 135-237 (329)
No 1
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=3.8e-44 Score=326.34 Aligned_cols=283 Identities=38% Similarity=0.659 Sum_probs=212.0
Q ss_pred CChHHHHHHHHHHHHhhccccccccccChHHHHHHHhCCCCCCEEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHc
Q 018606 41 STPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 41 ~~~~~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~ 120 (353)
....++++||+++|+.+|.+|+.+++.+|+.+..++...+.+..++|+|||+|+++...|.+.++|+|++..++..|++.
T Consensus 5 ~~~eleqeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~ 84 (293)
T KOG1331|consen 5 QLTELEQEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRS 84 (293)
T ss_pred hHHHHHHHHhHHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-eEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccchhhccccccccHHh
Q 018606 121 GH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKY 199 (353)
Q Consensus 121 ~i-~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~~~~~~~~~~~~~~ 199 (353)
+. ....+|+.++|+++.+||.+++++++||+.+.+|+..+++++.|+|+|||..+|++|+.++........|. .+
T Consensus 85 ~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~~~~~s~~~----~~ 160 (293)
T KOG1331|consen 85 GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQHQSSSKSNYK----KG 160 (293)
T ss_pred CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhccCcccccchh----cc
Confidence 87 69999999999999999999999999999999999999999999999999999999999998776554443 22
Q ss_pred HhhhhCCCCCcccCC-CCCccccccccccCCCcccCCCCCCCCCccccccccccccCCCCccccccccccCCcccceeec
Q 018606 200 VEEWIGPGSPRVRSP-SARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPW 278 (353)
Q Consensus 200 ~~~w~~~~~~~~~~~-~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qd~lvpW 278 (353)
...|.....+-+... ...... ..+.....+. .+.++ .-..+...+...+++||.++||
T Consensus 161 ~~~~~g~~~dv~~~~~~~~~~~-~~e~~~~~~~----------------~~~~~----~~~~~~l~~~p~~e~~~~~q~~ 219 (293)
T KOG1331|consen 161 VEEVRGDEQDVLAAWGLQSEQD-RGETQLGNGM----------------SLKVK----NRNMAALKVIPPEEQQDVLQPW 219 (293)
T ss_pred hhhccCCccceecccccccccc-cccccccCCC----------------ccccc----cccccccccCCchhhcchhccc
Confidence 222222111111000 000000 0000000000 01111 0112233455678999999999
Q ss_pred ccCCCCcccccchhhhhhccccccCCCCCceeeeeeeecccccHHHHHhcccCCcEEEEccccCCCeEEEEEEc
Q 018606 279 HLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRT 352 (353)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ryyH~F~~gEL~~l~~~~~~~~v~~~~~d~~nwcvi~~k~ 352 (353)
+-+...... -........+..++..+.+|+||||||++|||++||.++-+++|+.++||+||||||++|.
T Consensus 220 ~~~~~~~~~----~~~~De~~~~~~~~~~~~t~~RYYHvfregEL~~lv~~~~~~~l~S~~~e~gnwcvVaeK~ 289 (293)
T KOG1331|consen 220 KEPIQAPKS----LPPNDEKSTESPSQLRESTFQRYYHVFREGELAELVESVVGLRLLSSGYERGNWCVVAEKK 289 (293)
T ss_pred ccccccccc----cCCcchhcccchhhhcchhheeeeEecchHHHHHHHhhccceEeeeeccccCCeEEEEeec
Confidence 843321000 0000001111123445679999999999999999999886799999999999999999996
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.89 E-value=7.7e-23 Score=186.23 Aligned_cols=133 Identities=28% Similarity=0.434 Sum_probs=117.2
Q ss_pred HHHHHHHHHhhccccccc-------cccChHHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHH
Q 018606 47 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIK 115 (353)
Q Consensus 47 ~~~v~~~yd~~a~~y~~~-------~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~ 115 (353)
++.++++|+++++.||.. .+..|++.........+|.+|||||||||.++. ..+.++|+|+|+|+.||+
T Consensus 10 ~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~ 89 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLE 89 (238)
T ss_pred HHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHH
Confidence 578999999999999863 367888766666566689999999999999763 244789999999999999
Q ss_pred HHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 116 ICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 116 ~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
.|+++ +++|+++|+++|||++++||+|.+...|+++++ +.++|+|++|+|||||++++..+...
T Consensus 90 ~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d---~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 90 VAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD---IDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred HHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC---HHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 99998 377999999999999999999999999999998 78999999999999999999987754
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.87 E-value=2e-22 Score=184.57 Aligned_cols=135 Identities=29% Similarity=0.550 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhhccccccc-------cccChHHHHHHHhCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHH
Q 018606 46 EKKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSL 113 (353)
Q Consensus 46 e~~~v~~~yd~~a~~y~~~-------~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~ 113 (353)
.++++.++|+++++.|+.. .+..|++...-+....+|.+|||+|||||.++. ..+...|+|+|+|+.|
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp --------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 4568999999999999873 356787644444467788999999999998753 2456799999999999
Q ss_pred HHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 114 IKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 114 l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
++.|+++ +++++++|++++|+++++||+|++.+.|+.+++ +.++|+|++|+|||||+++|..+....
T Consensus 85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 85 LEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp HHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred HHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 9999986 689999999999999999999999999999998 678999999999999999999887543
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.83 E-value=3.8e-20 Score=172.62 Aligned_cols=134 Identities=28% Similarity=0.405 Sum_probs=111.8
Q ss_pred HHHHHHHHHhhccccccc-------cccChHHHHHHHhCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHH
Q 018606 47 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLI 114 (353)
Q Consensus 47 ~~~v~~~yd~~a~~y~~~-------~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l 114 (353)
.+.+.++|+.+|+.|+.. ....|++....+..+.++.+|||||||+|.++.. .+...|+|+|+|+.|+
T Consensus 32 ~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml 111 (261)
T PLN02233 32 ANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL 111 (261)
T ss_pred HHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 457888999999999852 2345665544344677889999999999997532 3456999999999999
Q ss_pred HHHHHc----------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 115 KICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 115 ~~a~~~----------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
+.|+++ +++++++|+..+|+++++||+|++..++||+++ +..+++++.|+|||||++++.+|....
T Consensus 112 ~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 112 AVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred HHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCC---HHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999754 478999999999999999999999999999987 788999999999999999999987543
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.80 E-value=4.3e-19 Score=159.63 Aligned_cols=153 Identities=23% Similarity=0.312 Sum_probs=127.4
Q ss_pred cCCCCCCCCCCCCCChHHHHH-HHHHHHHhhccccccc-------cccChHHHHHHHhCCCCCCEEEEECCccccccc--
Q 018606 28 TGEDQRCSSSSIKSTPELEKK-YVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-- 97 (353)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~e~~-~v~~~yd~~a~~y~~~-------~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~-- 97 (353)
.+....|+++++....+-+++ .|+.+|+.+|..|+-. .++.|+.+..--.....+.++||++||||-.+-
T Consensus 39 ~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFri 118 (296)
T KOG1540|consen 39 LSVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRI 118 (296)
T ss_pred cccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHH
Confidence 345678999999988777764 6899999999999762 367786654443445567899999999998642
Q ss_pred --c------CCCcEEEEEeCCHHHHHHHHHcC----------CeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHH
Q 018606 98 --L------NPDCFFVGCDISPSLIKICVDRG----------HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159 (353)
Q Consensus 98 --~------~~~~~v~gvD~S~~~l~~a~~~~----------i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~ 159 (353)
. ....+|+++|+++.||+.++++. +.++.+|+++|||++++||+.++.+.|...++ +.+
T Consensus 119 l~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th---~~k 195 (296)
T KOG1540|consen 119 LRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH---IQK 195 (296)
T ss_pred HHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC---HHH
Confidence 1 23479999999999999998872 78999999999999999999999999999998 789
Q ss_pred HHHHHHhccccCcEEEEEEcCCCc
Q 018606 160 AIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 160 ~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
+|+|++|+|||||++++..|+...
T Consensus 196 ~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 196 ALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred HHHHHHHhcCCCcEEEEEEccccc
Confidence 999999999999999999887654
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.75 E-value=1.3e-17 Score=159.49 Aligned_cols=98 Identities=20% Similarity=0.247 Sum_probs=87.5
Q ss_pred CCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606 81 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h 150 (353)
++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ ++.++++|+..+++.+++||+|++..+|+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 567999999999997542 5678999999999999999865 478899999999887889999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+.+ +..+++++.++|||||.+++.+++.
T Consensus 211 v~d---~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 211 VAN---PAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred cCC---HHHHHHHHHHHcCCCcEEEEEECCc
Confidence 998 6789999999999999999998764
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=2.3e-17 Score=150.70 Aligned_cols=131 Identities=23% Similarity=0.394 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhccccccc-------cccChHHHHHHHhCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHH
Q 018606 47 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLI 114 (353)
Q Consensus 47 ~~~v~~~yd~~a~~y~~~-------~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l 114 (353)
.+.++.+|++++..|+.. .+..|+........+.++.+|||+|||+|.++. . .++..|+|+|+|+.|+
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~ 83 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML 83 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 568899999999999862 344455333333356678999999999999753 2 3567999999999999
Q ss_pred HHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 115 KICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 115 ~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+.|+++ +++++.+|+..+++++++||+|++..+++|+++ +..+++++.++|+|||++++....
T Consensus 84 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 84 SVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred HHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEECC
Confidence 998875 478899999999888899999999999999988 678999999999999999987654
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.74 E-value=6.6e-18 Score=131.49 Aligned_cols=88 Identities=34% Similarity=0.577 Sum_probs=76.1
Q ss_pred EEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHH
Q 018606 86 LDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 158 (353)
Q Consensus 86 LDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~ 158 (353)
||+|||+|.++.. .++..|+|+|+++.+++.++++ ++.+..+|+..+|+++++||+|++..+++|+.+ +.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~---~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED---PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH---HH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC---HH
Confidence 8999999997642 4688999999999999999997 456999999999999999999999999999944 78
Q ss_pred HHHHHHHhccccCcEEEE
Q 018606 159 KAIEELVRVVKKGSLVLI 176 (353)
Q Consensus 159 ~~l~el~rvLkpgG~lli 176 (353)
.+++++.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.74 E-value=7.7e-18 Score=144.21 Aligned_cols=114 Identities=30% Similarity=0.440 Sum_probs=91.3
Q ss_pred cccccChHHHHHHHh-CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCc
Q 018606 63 STRFAKWPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG 139 (353)
Q Consensus 63 ~~~~~~~~~~~~~l~-~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~f 139 (353)
...+..+..+...+. ...++.+|||||||+|.++.. ..+.+++|+|+++.+++. ........+....+.++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 3 RHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK---RNVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp -GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH---TTSEEEEEECHTHHCHSSSE
T ss_pred hhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh---hhhhhhhhhhhhhhccccch
Confidence 334555665555444 478889999999999998753 345699999999999988 44555555555556678999
Q ss_pred cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
|+|+++.+|+|+++ +..+|+++.++|||||++++.++...
T Consensus 80 D~i~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 80 DLIICNDVLEHLPD---PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp EEEEEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hhHhhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999997 78999999999999999999998753
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.73 E-value=2.2e-17 Score=152.96 Aligned_cols=134 Identities=25% Similarity=0.347 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhhccccccccccChHHHH-HHHhCCC--CCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHH
Q 018606 45 LEKKYVHRVYDAIAPHFSSTRFAKWPKVA-TFLNSLP--SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 119 (353)
Q Consensus 45 ~e~~~v~~~yd~~a~~y~~~~~~~~~~~~-~~l~~l~--~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~ 119 (353)
++++.+...|++.+..|+..... ...+. .++..++ ++.+|||+|||+|.++.. ..+..++|+|+|+.|++.|++
T Consensus 4 ~~k~~i~~~F~~aa~~Y~~~~~~-q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~ 82 (251)
T PRK10258 4 VNKQAIAAAFGRAAAHYEQHAEL-QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQ 82 (251)
T ss_pred cCHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHh
Confidence 34677888999999988753221 12222 2223332 467999999999987542 456899999999999999998
Q ss_pred c--CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 120 R--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 120 ~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
+ ...++++|+..+|+++++||+|++..+++|+.+ +..+|.++.++|+|||.++++++...
T Consensus 83 ~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d---~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 83 KDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGN---LSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred hCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCC---HHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 7 357899999999998899999999999999988 67899999999999999999988753
No 11
>PRK05785 hypothetical protein; Provisional
Probab=99.73 E-value=2.3e-17 Score=150.72 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhhcccccccc-------ccChHH-HHHHHh-CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHH
Q 018606 46 EKKYVHRVYDAIAPHFSSTR-------FAKWPK-VATFLN-SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSL 113 (353)
Q Consensus 46 e~~~v~~~yd~~a~~y~~~~-------~~~~~~-~~~~l~-~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~ 113 (353)
..+.+.++|+.+|..|+... ...|++ +...+. ...++.+|||||||||.++.. ..+..|+|+|+|++|
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~M 86 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENM 86 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHH
Confidence 45678899999999998632 234654 333333 335578999999999997542 115799999999999
Q ss_pred HHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccC
Q 018606 114 IKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 171 (353)
Q Consensus 114 l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpg 171 (353)
++.|+++ ..++++|++.+|+++++||+|++..+|||+.+ +..+++++.|+|||.
T Consensus 87 l~~a~~~-~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d---~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 87 LKMNLVA-DDKVVGSFEALPFRDKSFDVVMSSFALHASDN---IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHhc-cceEEechhhCCCCCCCEEEEEecChhhccCC---HHHHHHHHHHHhcCc
Confidence 9999886 45789999999999999999999999999988 678999999999994
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.72 E-value=2.6e-17 Score=152.97 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=87.3
Q ss_pred CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606 79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
..++.+|||||||+|.++. ..++..|+|+|+|+.|++.|++++++++++|+..++ ++++||+|++..++||+++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d- 104 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVVVSNAALQWVPE- 104 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEEehhhhhCCC-
Confidence 3567899999999999764 246789999999999999999999999999998875 4679999999999999987
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 155 SRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 155 e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+..++++++++|||||.+++.++.
T Consensus 105 --~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 105 --HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred --HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 678999999999999999998765
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.71 E-value=1.2e-16 Score=154.61 Aligned_cols=100 Identities=25% Similarity=0.374 Sum_probs=88.6
Q ss_pred CCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606 80 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 148 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl 148 (353)
.++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ ++.++++|+..+|+++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 5678999999999997542 2377999999999999988774 4789999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
+|+++ +..+++++.|+|||||+++|.+|...
T Consensus 197 ~h~~d---~~~~l~e~~rvLkpGG~lvi~~~~~~ 227 (340)
T PLN02244 197 EHMPD---KRKFVQELARVAAPGGRIIIVTWCHR 227 (340)
T ss_pred hccCC---HHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 99998 67899999999999999999988653
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.70 E-value=3.9e-17 Score=151.81 Aligned_cols=127 Identities=23% Similarity=0.354 Sum_probs=100.6
Q ss_pred HHHhhcccccccccc----------ChHHHHHHHhCC-CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHH
Q 018606 53 VYDAIAPHFSSTRFA----------KWPKVATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 119 (353)
Q Consensus 53 ~yd~~a~~y~~~~~~----------~~~~~~~~l~~l-~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~ 119 (353)
.||.++.+|+...|. .|..+..++..+ .++.+|||+|||+|.++.. ..+..|+|+|+|+.|++.|++
T Consensus 5 ~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~ 84 (255)
T PRK11036 5 NFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ 84 (255)
T ss_pred ChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 466666666653332 344555566554 3457999999999997642 456899999999999999987
Q ss_pred c--------CCeEEEeeCCCCC-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 120 R--------GHEVLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 120 ~--------~i~~~~~D~~~l~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
+ +++++++|+..++ +.+++||+|++..+++|+.+ +..++.++.++|||||++++.+++..
T Consensus 85 ~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 85 AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVAD---PKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCC---HHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 5 3678999988764 56789999999999999988 67899999999999999999988754
No 15
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.68 E-value=1.4e-16 Score=139.45 Aligned_cols=101 Identities=28% Similarity=0.457 Sum_probs=87.6
Q ss_pred HHhCCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-C-CCCCCCccEEEechhhh
Q 018606 75 FLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-L-PYRSDFGDAAISIAVLH 149 (353)
Q Consensus 75 ~l~~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l-~~~~~~fD~Vi~~~vl~ 149 (353)
+..-++||++|||+|||.|.++.. ..++...|+|+++..+..|.++++.++++|+.. + .|++++||.||++.+|+
T Consensus 7 I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 7 IAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred HHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 334568999999999999998753 678999999999999999999999999999987 4 38899999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
++.. +..+|.||.|+ |...+++++++
T Consensus 87 ~~~~---P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 87 AVRR---PDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred hHhH---HHHHHHHHHHh---cCeEEEEecCh
Confidence 9988 67899999776 55678887664
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.65 E-value=3.4e-16 Score=126.37 Aligned_cols=97 Identities=32% Similarity=0.530 Sum_probs=81.0
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeC-CCCCCCCCCccEEEech-
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADA-VNLPYRSDFGDAAISIA- 146 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~-~~l~~~~~~fD~Vi~~~- 146 (353)
|+.+|||||||+|.++. ..++.+|+|+|+|+.|++.|+++ +++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 57899999999999853 24899999999999999999886 689999999 33333 45699999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+++++...+.+..+++++.+.|+|||+++|..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 66666554457899999999999999999875
No 17
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.65 E-value=6.8e-16 Score=135.01 Aligned_cols=132 Identities=21% Similarity=0.347 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhccccccccccChHHHHHHHhCCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-
Q 018606 45 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR- 120 (353)
Q Consensus 45 ~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~- 120 (353)
+.......+|++++..|... .+..+..++..-.+ ..||+||||||..... .|+.+|+++|+++.|-+++.++
T Consensus 44 ~p~~~ft~~yne~~~~ykre---lFs~i~~~~gk~~K-~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~ 119 (252)
T KOG4300|consen 44 IPNSNFTSIYNEIADSYKRE---LFSGIYYFLGKSGK-GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSA 119 (252)
T ss_pred cchhHHHHHHHHHHHHHHHH---HHhhhHHHhcccCc-cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHH
Confidence 34456677888888877321 12222233322222 3689999999998765 4788999999999999998776
Q ss_pred ------CCe-EEEeeCCCCC-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 121 ------GHE-VLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 121 ------~i~-~~~~D~~~l~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
.+. |+.++.+++| ++++++|+|++..+|....+ +.+.|.++.|+|||||++++..-...+
T Consensus 120 ~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~---~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 120 AEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVED---PVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred hhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCC---HHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 344 8999999999 88999999999999999888 789999999999999999988654433
No 18
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.64 E-value=1.4e-15 Score=140.67 Aligned_cols=98 Identities=18% Similarity=0.359 Sum_probs=84.9
Q ss_pred CCCCCEEEEECCccccccc------cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606 79 LPSGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 144 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~------~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~ 144 (353)
+.++.+|||||||+|..+. ..++.+++|+|+|+.|++.|+++ +++++++|+..++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 4678899999999999752 24778999999999999999886 478999999988764 4899999
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
..++||+.+.+ +..++++++++|||||.+++...
T Consensus 132 ~~~l~~l~~~~-~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 132 NFTLQFLEPSE-RQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hhHHHhCCHHH-HHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999998644 68899999999999999999863
No 19
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.64 E-value=2.2e-15 Score=140.66 Aligned_cols=104 Identities=26% Similarity=0.309 Sum_probs=89.9
Q ss_pred CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH 149 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~ 149 (353)
.+.++.+|||||||+|..+.. ..++.|+|+|+|+.|++.|+++ ++.+..+|+...|+++++||+|++..+++
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 457889999999999986532 3467999999999999999986 47889999999999899999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
|++..+ +..+|+++.++|||||++++..+...
T Consensus 129 h~~~~d-~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 129 HLSYAD-KKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred hCCHHH-HHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 987433 78999999999999999999987643
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.62 E-value=1.2e-15 Score=130.50 Aligned_cols=97 Identities=34% Similarity=0.584 Sum_probs=85.4
Q ss_pred CCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEEec
Q 018606 80 PSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISI 145 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi~~ 145 (353)
..+.+|||+|||+|.++. ..++.+++|+|+|+.|++.|+++ +++|+++|+.+++ ++ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 356899999999999753 35688999999999999999985 5799999999977 55 899999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.+++|+.+ +..+++++.++|++||.+++..+.
T Consensus 81 ~~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD---PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999998 678999999999999999999877
No 21
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.62 E-value=4.8e-16 Score=139.88 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=86.5
Q ss_pred CCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606 81 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~ 152 (353)
+|.+|||||||-|.++. +..|..|+|+|+|+.+++.|+.+ + +++.+..++++....++||+|+|..||+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 78999999999999875 36679999999999999999976 3 4577777777766568999999999999999
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
+ +..+++.+.+.+||||.+++++.+..
T Consensus 139 d---p~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 139 D---PESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred C---HHHHHHHHHHHcCCCcEEEEeccccC
Confidence 9 67899999999999999999998743
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=7.8e-15 Score=131.25 Aligned_cols=109 Identities=24% Similarity=0.255 Sum_probs=86.6
Q ss_pred HHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCcc
Q 018606 70 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGD 140 (353)
Q Consensus 70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD 140 (353)
+.+...+... ++.+|||+|||+|.++.. ..+..|+|+|+|+.|++.++++ ++++..+|+..+++ ++.||
T Consensus 20 ~~l~~~l~~~-~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD 97 (197)
T PRK11207 20 SEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYD 97 (197)
T ss_pred HHHHHhcccC-CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcC
Confidence 4555555433 457999999999997642 4577999999999999998875 46788899988777 46799
Q ss_pred EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEE-EEcCC
Q 018606 141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI-TVWAV 181 (353)
Q Consensus 141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli-~~~~~ 181 (353)
+|++..++||+...+ +..+++++.++|+|||.+++ .++..
T Consensus 98 ~I~~~~~~~~~~~~~-~~~~l~~i~~~LkpgG~~~~~~~~~~ 138 (197)
T PRK11207 98 FILSTVVLMFLEAKT-IPGLIANMQRCTKPGGYNLIVAAMDT 138 (197)
T ss_pred EEEEecchhhCCHHH-HHHHHHHHHHHcCCCcEEEEEEEecC
Confidence 999999999887433 78999999999999999655 44433
No 23
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.60 E-value=4.8e-15 Score=136.35 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=84.8
Q ss_pred CCCCCEEEEECCccccccc----c--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606 79 LPSGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 144 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~----~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~ 144 (353)
+.++.+|||||||+|.++. . .++.+++|+|+|+.|++.|+++ +++++++|+..++++ .+|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 3577899999999999753 1 3688999999999999999875 368899999998875 4899999
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
..++||+.+.+ +..+++++.++|+|||.+++....
T Consensus 129 ~~~l~~~~~~~-~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 129 NFTLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred ecchhhCCHHH-HHHHHHHHHHhcCCCeEEEEeecc
Confidence 99999997544 689999999999999999998754
No 24
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.60 E-value=3.9e-15 Score=138.34 Aligned_cols=98 Identities=22% Similarity=0.323 Sum_probs=85.2
Q ss_pred CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606 79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~ 152 (353)
+.++.+|||||||+|.++. ..++..|+|+|+|+.|++.|+++ ++.++.+|+..+. +..+||+|++..++||+.
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLP 107 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCC
Confidence 4567899999999998753 35678999999999999999987 6889999998765 356899999999999998
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+ ...+++++.++|||||.+++..+.
T Consensus 108 d---~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 108 D---HLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred C---HHHHHHHHHHhcCCCcEEEEECCC
Confidence 7 678999999999999999998644
No 25
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.60 E-value=4.7e-15 Score=142.44 Aligned_cols=135 Identities=19% Similarity=0.268 Sum_probs=103.1
Q ss_pred CChHHHHHHHHH--HHHhhcccccccc-ccChHH-H-HHHHhC---CCCCCEEEEECCccccccc----cCCCcEEEEEe
Q 018606 41 STPELEKKYVHR--VYDAIAPHFSSTR-FAKWPK-V-ATFLNS---LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCD 108 (353)
Q Consensus 41 ~~~~~e~~~v~~--~yd~~a~~y~~~~-~~~~~~-~-~~~l~~---l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD 108 (353)
+.+..-+++... +|+.++..|+..- ...|.. + ...+.. ..++.+|||||||+|.++. ..++..++|+|
T Consensus 65 ~~~~~~~h~~~~~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD 144 (340)
T PLN02490 65 SQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILD 144 (340)
T ss_pred cccchhhhhhcceeEccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEE
Confidence 334444444444 5788888888632 223322 1 122322 2467899999999999643 24567999999
Q ss_pred CCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 109 ISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 109 ~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+|+.|++.|+++ +++++.+|+..+++++++||+|++..+++|+++ ...+|+++.++|+|||++++..
T Consensus 145 ~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d---~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 145 QSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred CCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC---HHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999886 688999999999998899999999999999998 5679999999999999998864
No 26
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.59 E-value=1.2e-14 Score=130.64 Aligned_cols=105 Identities=24% Similarity=0.367 Sum_probs=87.6
Q ss_pred HHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 72 VATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 72 ~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
+...+..++++.+|||||||+|.++. ..++..++|+|+|+.|++.|+++ ++.+.++|+.. |+++++||+|++.
T Consensus 34 ~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~ 112 (204)
T TIGR03587 34 FARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTK 112 (204)
T ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEEC
Confidence 33445567788899999999999754 24678999999999999999985 67899999988 8889999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
++|+|+++ +.+..+++++.|++ ++.++|..+.
T Consensus 113 ~vL~hl~p-~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 113 GVLIHINP-DNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred ChhhhCCH-HHHHHHHHHHHhhc--CcEEEEEEee
Confidence 99999974 45789999999998 5677777654
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=1.5e-14 Score=129.15 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=84.0
Q ss_pred HHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEE
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAA 142 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~V 142 (353)
.+...+.... +.+|||+|||+|.++.. ..+..|+|+|+|+.|++.++++ + +.+..+|+...+++ ++||+|
T Consensus 21 ~l~~~~~~~~-~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I 98 (195)
T TIGR00477 21 AVREAVKTVA-PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFI 98 (195)
T ss_pred HHHHHhccCC-CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEE
Confidence 4445554443 56999999999997542 4578999999999999988765 3 56677787766664 579999
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
++..++||+.... +..+++++.++|+|||++++..|.
T Consensus 99 ~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 99 FSTVVFMFLQAGR-VPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred EEecccccCCHHH-HHHHHHHHHHHhCCCcEEEEEEec
Confidence 9999999987543 678999999999999997777654
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.58 E-value=9.6e-15 Score=140.13 Aligned_cols=108 Identities=24% Similarity=0.325 Sum_probs=86.0
Q ss_pred HHHHHHHhCCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHH--------cCCeEEEeeCCCCCCCCCC
Q 018606 70 PKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVD--------RGHEVLVADAVNLPYRSDF 138 (353)
Q Consensus 70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~--------~~i~~~~~D~~~l~~~~~~ 138 (353)
..+...+..+ ++.+|||||||+|.++.. .....|+|+|+|+.|+..++. .++.++.+|+..+|+ ++.
T Consensus 112 ~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~ 189 (322)
T PRK15068 112 DRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA 189 (322)
T ss_pred HHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence 3344444333 578999999999998642 222369999999999865432 157899999999998 789
Q ss_pred ccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
||+|+|.++++|+.+ +..+|++++++|+|||.+++.++..+
T Consensus 190 FD~V~s~~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~~~~i~ 230 (322)
T PRK15068 190 FDTVFSMGVLYHRRS---PLDHLKQLKDQLVPGGELVLETLVID 230 (322)
T ss_pred cCEEEECChhhccCC---HHHHHHHHHHhcCCCcEEEEEEEEec
Confidence 999999999999988 67899999999999999999876544
No 29
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.57 E-value=2.7e-15 Score=119.51 Aligned_cols=87 Identities=31% Similarity=0.598 Sum_probs=71.5
Q ss_pred EEEECCcccccccc-------CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEech-hhhh
Q 018606 85 VLDAGCGNGKYLGL-------NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA-VLHH 150 (353)
Q Consensus 85 VLDvGCG~G~~~~~-------~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~-vl~h 150 (353)
|||+|||+|.++.. .+...++|+|+|+.|++.++++ .++++++|+.+++..+++||+|++.+ +++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 79999999997531 2348999999999999999987 46999999999998888999999955 5999
Q ss_pred cCChhHHHHHHHHHHhccccCc
Q 018606 151 LSTESRRKKAIEELVRVVKKGS 172 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG 172 (353)
+.+.+ ...+++++.++|||||
T Consensus 81 ~~~~~-~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEE-LEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHH-HHHHHHHHHHTEEEEE
T ss_pred CCHHH-HHHHHHHHHHHhCCCC
Confidence 87655 7899999999999998
No 30
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.56 E-value=1e-14 Score=132.97 Aligned_cols=99 Identities=27% Similarity=0.413 Sum_probs=87.2
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 153 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~ 153 (353)
.+.+|||||||+|.++. ..+...++|+|+++.+++.++++ ++.++.+|+..+++++++||+|++..++||+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 34689999999998653 35667899999999999999887 578999999999988899999999999999988
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 154 ESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 154 ~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
+..+|.++.++|+|||.+++..+...
T Consensus 114 ---~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 114 ---LSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred ---HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 67899999999999999999987644
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.56 E-value=1.5e-14 Score=146.05 Aligned_cols=101 Identities=30% Similarity=0.403 Sum_probs=88.6
Q ss_pred CCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606 79 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 149 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~ 149 (353)
+.++.+|||||||+|..+. ...++.|+|+|+|+.|++.|+++ ++.|..+|+..+++++++||+|++..+++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 4677899999999998543 23477999999999999999875 46899999999988888999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
|+.+ +..++++++|+|||||++++.++...
T Consensus 344 h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 344 HIQD---KPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred ccCC---HHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9998 67899999999999999999988654
No 32
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.56 E-value=2.8e-14 Score=129.13 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=90.3
Q ss_pred HHHHHHHhCC--CCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------------------CCeEEE
Q 018606 70 PKVATFLNSL--PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------------------GHEVLV 126 (353)
Q Consensus 70 ~~~~~~l~~l--~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------------------~i~~~~ 126 (353)
+.+..++..+ +++.+|||+|||.|..+. +..|..|+|+|+|+.+++.+.+. ++++++
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 4455555544 577899999999999765 36788999999999999986331 467899
Q ss_pred eeCCCCCCC-CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 127 ADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 127 ~D~~~l~~~-~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
+|+..++.. .+.||.|+...+++|++... +..+++.+.++|||||++++.++...
T Consensus 101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~-R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 101 GDFFALTAADLGPVDAVYDRAALIALPEEM-RQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred ccCCCCCcccCCCcCEEEechhhccCCHHH-HHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 999987742 46799999999999997544 78899999999999999888877654
No 33
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.55 E-value=1.9e-14 Score=134.94 Aligned_cols=102 Identities=25% Similarity=0.359 Sum_probs=88.1
Q ss_pred hCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~ 144 (353)
..+.++.+|||||||+|..+. ..+..+|+|+|+++.|++.|+++ +++++.+|+..+++++++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 356789999999999998532 14556899999999999999875 568889999999988889999999
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
..+++|.++ ...+++++.++|||||++++..+..
T Consensus 153 ~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 153 NCVINLSPD---KERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred cCcccCCCC---HHHHHHHHHHHcCCCcEEEEEEeec
Confidence 999999887 5789999999999999999987654
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=5.1e-14 Score=133.18 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=84.6
Q ss_pred HHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEE
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA 142 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~V 142 (353)
.+...+..+++ .+|||||||+|.++.. ..+..|+|+|+|+.|++.++++ ++++...|+...++ +++||+|
T Consensus 111 ~~~~~~~~~~~-~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I 188 (287)
T PRK12335 111 EVLEAVQTVKP-GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFI 188 (287)
T ss_pred HHHHHhhccCC-CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEE
Confidence 34444444444 5999999999997642 4578999999999999988765 46777888877666 6789999
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
++..++||+... ++..+++++.++|+|||++++..+
T Consensus 189 ~~~~vl~~l~~~-~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 189 LSTVVLMFLNRE-RIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred EEcchhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999999998743 378999999999999999777654
No 35
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.54 E-value=2.8e-14 Score=136.00 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=81.1
Q ss_pred CCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHH---c-----CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVD---R-----GHEVLVADAVNLPYRSDFGDAAISIAV 147 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~---~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~v 147 (353)
..++.+|||||||+|.++.. ..+ ..|+|+|+|+.|+..++. . .+.+..+++..++.. ..||+|+|.++
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 34578999999999997532 233 379999999999875432 1 457788888888864 58999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
++|+.+ +..+|++++++|||||.|++.++..+
T Consensus 198 L~H~~d---p~~~L~el~r~LkpGG~Lvletl~i~ 229 (314)
T TIGR00452 198 LYHRKS---PLEHLKQLKHQLVIKGELVLETLVID 229 (314)
T ss_pred hhccCC---HHHHHHHHHHhcCCCCEEEEEEEEec
Confidence 999988 67899999999999999999876544
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.53 E-value=2.9e-15 Score=118.64 Aligned_cols=86 Identities=34% Similarity=0.588 Sum_probs=55.5
Q ss_pred EEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----C--CeEEEeeCCCCC--CCCCCccEEEechhhhhcC
Q 018606 86 LDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----G--HEVLVADAVNLP--YRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 86 LDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----~--i~~~~~D~~~l~--~~~~~fD~Vi~~~vl~h~~ 152 (353)
||||||+|.++.. .+..+++|+|+|+.|++.|+++ . ......+..+.. ...++||+|++..++||+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999998753 5788999999999999777766 1 223333333322 1125999999999999996
Q ss_pred ChhHHHHHHHHHHhccccCcEE
Q 018606 153 TESRRKKAIEELVRVVKKGSLV 174 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~l 174 (353)
+ +..+++.+.++|+|||+|
T Consensus 81 ~---~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D---IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----HHHHHHHHTTT-TSS-EE
T ss_pred h---HHHHHHHHHHHcCCCCCC
Confidence 5 789999999999999986
No 37
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.53 E-value=1.1e-13 Score=126.40 Aligned_cols=132 Identities=26% Similarity=0.430 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhhccccccc-c------ccChHH-HHHHHhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHH
Q 018606 46 EKKYVHRVYDAIAPHFSST-R------FAKWPK-VATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPS 112 (353)
Q Consensus 46 e~~~v~~~yd~~a~~y~~~-~------~~~~~~-~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~ 112 (353)
.++.+.++|+.++..|+.. + ...|.. +...+ ...++.+|||+|||+|.++. ..+ ..+++|+|+++.
T Consensus 9 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 87 (239)
T PRK00216 9 KQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWL-GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG 87 (239)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHh-CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence 4567788999999988631 1 222222 22222 34467899999999999753 233 589999999999
Q ss_pred HHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 113 LIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 113 ~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+++.++++ ++.++.+|+..+++..+.||+|++..+++++.+ +..+|.++.++|+|||.+++..+..
T Consensus 88 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~---~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 88 MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD---IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCC---HHHHHHHHHHhccCCcEEEEEEecC
Confidence 99999885 368889999988877789999999999999988 6789999999999999999887654
No 38
>PRK06202 hypothetical protein; Provisional
Probab=99.53 E-value=6.2e-14 Score=128.40 Aligned_cols=111 Identities=19% Similarity=0.168 Sum_probs=87.2
Q ss_pred hHHHHHHHhCCCCCCEEEEECCcccccccc--------CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCC
Q 018606 69 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--------NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRS 136 (353)
Q Consensus 69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--------~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~ 136 (353)
+..+........++.+|||||||+|.++.. .++..|+|+|+|+.|++.|+++ ++.+...+...++..+
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~ 127 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEG 127 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccC
Confidence 444444433445678999999999986421 2456999999999999999886 5778888888888778
Q ss_pred CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
++||+|+++.++||+++++ ...+++++.|+++ |.+++..+...
T Consensus 128 ~~fD~V~~~~~lhh~~d~~-~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAE-VVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCccEEEECCeeecCChHH-HHHHHHHHHHhcC--eeEEEeccccC
Confidence 8999999999999998765 5689999999998 56666665543
No 39
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.53 E-value=6.7e-14 Score=126.37 Aligned_cols=127 Identities=28% Similarity=0.468 Sum_probs=98.6
Q ss_pred HHHHHhhcccccccc-------ccChHHHHHHHhCCCCCCEEEEECCccccccc----cCCC-cEEEEEeCCHHHHHHHH
Q 018606 51 HRVYDAIAPHFSSTR-------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICV 118 (353)
Q Consensus 51 ~~~yd~~a~~y~~~~-------~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~-~~v~gvD~S~~~l~~a~ 118 (353)
+++|+.++.+|+... ...|...........++.+|||+|||+|.++. ..+. ..++|+|+++.+++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 467777777776532 12232222212234477899999999999753 2333 68999999999999998
Q ss_pred Hc-----CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 119 DR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 119 ~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
++ ++.+..+|+..++++.+.||+|++..+++|+.+ +..+++++.++|+|||++++..+.
T Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 82 KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTD---IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred HHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCccc---HHHHHHHHHHHcCCCcEEEEEEec
Confidence 75 478999999998887889999999999999987 678999999999999999988764
No 40
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.52 E-value=1.9e-14 Score=130.58 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=81.0
Q ss_pred CCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc---------C----CeEEEeeCCCCCCCCCCccEEEech
Q 018606 82 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------G----HEVLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~---------~----i~~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
|.+|||+|||+|.+... ..+..|+|+|+++.|++.|+++ + +++...|++.+ .+.||+|+|..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 47899999999998763 5678999999999999999986 1 34555555554 34599999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
+++|+.+ +..++..+.+.|||||+++|++.+...
T Consensus 167 vleHV~d---p~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 167 VLEHVKD---PQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred HHHHHhC---HHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 9999999 789999999999999999999977554
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=1.5e-13 Score=127.76 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=87.6
Q ss_pred CCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
.+.||.+|||||||.|.++. ...+++|+|+++|+++.+.++++ ++++...|...+. +.||.|++++
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg 145 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG 145 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehh
Confidence 67899999999999999764 24589999999999999999985 4678888877765 3499999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
+++|+.... ...+++.+.++|+|||++++-+.....
T Consensus 146 mfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 146 MFEHVGKEN-YDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred hHHHhCccc-HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 999998744 789999999999999999998876544
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.50 E-value=4.5e-14 Score=131.89 Aligned_cols=97 Identities=14% Similarity=0.170 Sum_probs=82.0
Q ss_pred CCCEEEEECCccccc----c----ccC-----CCcEEEEEeCCHHHHHHHHHc---------------------------
Q 018606 81 SGSLVLDAGCGNGKY----L----GLN-----PDCFFVGCDISPSLIKICVDR--------------------------- 120 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~----~----~~~-----~~~~v~gvD~S~~~l~~a~~~--------------------------- 120 (353)
++.+|+|+|||+|.- + ... ++..|+|+|+|+.|++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 457999999999962 1 111 257999999999999999873
Q ss_pred -------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 121 -------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 121 -------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.+.|.++|+...+++.+.||+|+|.++++|++++. ...++++++++|+|||.+++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-QRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-HHHHHHHHHHHhCCCeEEEEEC
Confidence 46889999999887788999999999999997644 6789999999999999999863
No 43
>PRK06922 hypothetical protein; Provisional
Probab=99.50 E-value=1.4e-13 Score=140.38 Aligned_cols=105 Identities=26% Similarity=0.392 Sum_probs=87.6
Q ss_pred CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~--~~~~~fD~Vi~~ 145 (353)
...++.+|||||||+|.++. ..++..++|+|+|+.|++.|+++ ++.++++|+.++| +++++||+|+++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 44568899999999998743 36788999999999999999875 3577889998887 788999999999
Q ss_pred hhhhhcC----------ChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 146 AVLHHLS----------TESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 146 ~vl~h~~----------~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
.++||+. +.+.+..+|+++.++|||||++++......
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9999863 123478999999999999999999875433
No 44
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.49 E-value=6.5e-14 Score=131.21 Aligned_cols=103 Identities=24% Similarity=0.374 Sum_probs=77.3
Q ss_pred CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
.+++|.+|||||||.|.++.. ..+++|+|+.+|+...+.|+++ .+++..+|..+++. +||.|+++.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 478999999999999997642 3388999999999999999876 36788899887654 899999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
+++|+.... ...+++++.++|||||++++..+.....
T Consensus 136 ~~Ehvg~~~-~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 136 MFEHVGRKN-YPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp EGGGTCGGG-HHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred chhhcChhH-HHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 999997543 6899999999999999999988776553
No 45
>PRK08317 hypothetical protein; Provisional
Probab=99.49 E-value=2.8e-13 Score=123.25 Aligned_cols=100 Identities=32% Similarity=0.482 Sum_probs=87.9
Q ss_pred CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
.+.++.+|||+|||+|.++.. .+...++|+|+++.+++.|+++ ++.+..+|+..+++.++.||+|++..
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 467788999999999997532 2567999999999999999876 47889999998888889999999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+++|+.+ +..+++++.++|+|||.+++....
T Consensus 96 ~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 96 VLQHLED---PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhhccCC---HHHHHHHHHHHhcCCcEEEEEecC
Confidence 9999998 678999999999999999998754
No 46
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.48 E-value=1.1e-13 Score=121.51 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=79.3
Q ss_pred CCCCEEEEECCcccccccc-CC-CcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606 80 PSGSLVLDAGCGNGKYLGL-NP-DCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~~-~~-~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~ 152 (353)
+...++||+|||+|.++.. .+ .-.++++|+|+..++.|+++ ++++.++|+... .+.+.||+|+++.+++++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCC
Confidence 3447999999999999763 22 34999999999999999998 689999999875 4678999999999999999
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+.+.+..++..+...|+|||.|++..|-
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 8666889999999999999999999874
No 47
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.48 E-value=9.3e-14 Score=122.58 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=95.1
Q ss_pred cccccChHHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCC
Q 018606 63 STRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRS 136 (353)
Q Consensus 63 ~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~ 136 (353)
..|..+...+...+ .+.+...|.|+|||+|..+. ..|+..++|+|-|+.|++.|+++ +.+|..+|+....- .
T Consensus 13 ~eRtRPa~dLla~V-p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p-~ 90 (257)
T COG4106 13 DERTRPARDLLARV-PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP-E 90 (257)
T ss_pred HhccCcHHHHHhhC-CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC-C
Confidence 34444444444333 23445799999999999654 48999999999999999999988 78999999998753 5
Q ss_pred CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
..+|+++++++||++++ -.++|.++...|.|||.|.+..+...++
T Consensus 91 ~~~dllfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~de 135 (257)
T COG4106 91 QPTDLLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDE 135 (257)
T ss_pred Cccchhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCc
Confidence 67899999999999998 6789999999999999999998765443
No 48
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.48 E-value=2.4e-13 Score=120.18 Aligned_cols=130 Identities=27% Similarity=0.528 Sum_probs=97.5
Q ss_pred HHHhhccccccc-cccCh-----HHHHHHHhCCCC--CCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcC-
Q 018606 53 VYDAIAPHFSST-RFAKW-----PKVATFLNSLPS--GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRG- 121 (353)
Q Consensus 53 ~yd~~a~~y~~~-~~~~~-----~~~~~~l~~l~~--~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~- 121 (353)
++|..|..|+.. +.... .+...++ .++. ..-|||||||+|.-... .++...+|+|+|+.||+.|.++.
T Consensus 15 Ynd~eA~kYt~nsri~~IQ~em~eRaLELL-alp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~ 93 (270)
T KOG1541|consen 15 YNDTEAPKYTQNSRIVLIQAEMAERALELL-ALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL 93 (270)
T ss_pred echhhhhhccccceeeeehHHHHHHHHHHh-hCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh
Confidence 446677777653 22211 1222233 3444 67999999999987553 67789999999999999999763
Q ss_pred -CeEEEeeCCC-CCCCCCCccEEEechhhhhcCC--------hhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 122 -HEVLVADAVN-LPYRSDFGDAAISIAVLHHLST--------ESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 122 -i~~~~~D~~~-l~~~~~~fD~Vi~~~vl~h~~~--------~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
-+++.+|+-. +||++++||.+|++..++|+-+ ..|+..++..++.+|++|++.++.++...+
T Consensus 94 egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~ 165 (270)
T KOG1541|consen 94 EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE 165 (270)
T ss_pred hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch
Confidence 3688888864 8999999999999998887643 233567788899999999999999876544
No 49
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.47 E-value=2e-13 Score=124.04 Aligned_cols=93 Identities=26% Similarity=0.460 Sum_probs=80.9
Q ss_pred EEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606 84 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 84 ~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~ 151 (353)
+|||||||+|.++. ..+++.++|+|+|+.+++.|+++ .+.++.+|+...+++ ++||+|++..+++|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 69999999999653 24568999999999999999875 358899999777764 589999999999999
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 152 STESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 152 ~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.+ ...+++++.++|+|||.+++..+.
T Consensus 81 ~~---~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 81 KD---KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CC---HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 87 678999999999999999998764
No 50
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.47 E-value=4.7e-13 Score=121.53 Aligned_cols=131 Identities=19% Similarity=0.227 Sum_probs=96.7
Q ss_pred HHHHHHHHHhhccccccccccChHHHHHHHh--CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHH-c-
Q 018606 47 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD-R- 120 (353)
Q Consensus 47 ~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~--~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~-~- 120 (353)
.+.+.+.|+.-..-|.. ..+-+.+..++. .++++.+|||+|||.|..+. +..|..|+|+|+|+.+++.+.+ +
T Consensus 3 ~~~Wd~rw~~~~~~~~~--~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~ 80 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQ--EEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENG 80 (218)
T ss_pred HhHHHHHHcCCCCCCCC--CCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcC
Confidence 45667777654332332 233344555554 33567899999999999765 3678899999999999998643 2
Q ss_pred -----------------CCeEEEeeCCCCCCC-CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 121 -----------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 121 -----------------~i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.+++.++|+..++.. ...||+|+...+++|++.. .+..++..+.++|+|||++++.+..
T Consensus 81 l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~-~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 81 LTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEE-MRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred CCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHH-HHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 357789999987543 2589999999999999754 4789999999999999976665443
No 51
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.46 E-value=3.7e-13 Score=122.20 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=81.2
Q ss_pred CCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC-CCCccEEEechhhhh
Q 018606 81 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR-SDFGDAAISIAVLHH 150 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~h 150 (353)
.+.+|||+|||+|.++.. ..+..++|+|+++.+++.++++ ++.+..+|+..++.. .+.||+|++..+++|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 467999999999997542 3456799999999999998875 367778888776644 378999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+.+ +..+++++.++|+|||.+++..+.
T Consensus 125 ~~~---~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 125 VPD---PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEecC
Confidence 988 678999999999999999988764
No 52
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.46 E-value=3.2e-13 Score=122.56 Aligned_cols=100 Identities=26% Similarity=0.358 Sum_probs=80.0
Q ss_pred HHHHHhC-CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCcc
Q 018606 72 VATFLNS-LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGD 140 (353)
Q Consensus 72 ~~~~l~~-l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD 140 (353)
+...+.. ..++.+|||||||+|.++.. ..+..++|+|+|+.|++.|+++ ++.+.++|+..++ ++||
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD 121 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFD 121 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcC
Confidence 4444443 55688999999999998642 3466999999999999999875 4678899988875 7899
Q ss_pred EEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606 141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll 175 (353)
+|++..+++|++... +..++.++.+++++++.+.
T Consensus 122 ~ii~~~~l~~~~~~~-~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 122 IVVCMDVLIHYPASD-MAKALGHLASLTKERVIFT 155 (219)
T ss_pred EEEEhhHHHhCCHHH-HHHHHHHHHHHhCCCEEEE
Confidence 999999999987543 6789999999998665444
No 53
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.46 E-value=6e-13 Score=126.68 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=79.7
Q ss_pred HhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc------C--CeEEEeeCCC-CCCCCC----
Q 018606 76 LNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR------G--HEVLVADAVN-LPYRSD---- 137 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~------~--i~~~~~D~~~-l~~~~~---- 137 (353)
...++++.+|||+|||+|..+. ..+ +..|+|+|+|+.||+.|+++ + +.++++|+.. +++...
T Consensus 58 a~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 58 AAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred HHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccC
Confidence 3345677899999999999653 223 68999999999999998775 2 3557899876 344332
Q ss_pred CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
...++++..+++++...+ ...+|++++++|+|||.++|.+-...+
T Consensus 138 ~~~~~~~gs~~~~~~~~e-~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEE-AVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred CeEEEEecccccCCCHHH-HHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 233444556788887544 789999999999999999998755443
No 54
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.45 E-value=1.2e-12 Score=115.95 Aligned_cols=96 Identities=22% Similarity=0.154 Sum_probs=80.4
Q ss_pred hCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 77 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
..++++.+|||||||+|..+. ..++.+|+|+|+|+.|++.|+++ +++++.+|+..++. .++||+|++.
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence 345668999999999998543 36788999999999999999875 47899999998877 7799999997
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
. +.+ +..++.++.++|||||++++....
T Consensus 120 ~----~~~---~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 120 A----VAS---LSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred c----ccC---HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 5 233 578999999999999999988654
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.45 E-value=3.6e-13 Score=132.14 Aligned_cols=101 Identities=26% Similarity=0.374 Sum_probs=84.7
Q ss_pred CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h 150 (353)
.+.++.+|||||||+|.++.. ..+++|+|+|+|+.|++.|+++ .+++..+|+..+ +++||+|+++.+++|
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 357889999999999998642 3478999999999999999986 356777777655 478999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
+.... +..+++++.++|||||++++.++...
T Consensus 241 vg~~~-~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 241 VGPKN-YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CChHH-HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 97543 57899999999999999999987654
No 56
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.45 E-value=5e-13 Score=118.27 Aligned_cols=108 Identities=25% Similarity=0.301 Sum_probs=82.8
Q ss_pred HHHHHHHhCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccE
Q 018606 70 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDA 141 (353)
Q Consensus 70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~ 141 (353)
..+...+..++ +.++||+|||.|+.+. +..|..|+++|.|+..++.+++. .++....|+....++ +.||+
T Consensus 20 s~v~~a~~~~~-~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 20 SEVLEAVPLLK-PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHHHCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHHHhhcC-CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence 34555555554 5699999999999765 36789999999999988776553 467788999888774 68999
Q ss_pred EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
|++..+++|+..+ .+..++..|...++|||++++.++.
T Consensus 98 I~st~v~~fL~~~-~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 98 IVSTVVFMFLQRE-LRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEEESSGGGS-GG-GHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEEeccCCHH-HHHHHHHHHHhhcCCcEEEEEEEec
Confidence 9999999999865 4788999999999999999987653
No 57
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.43 E-value=6.1e-13 Score=118.59 Aligned_cols=101 Identities=29% Similarity=0.469 Sum_probs=81.6
Q ss_pred HHHHhCCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-C-CCCCCCccEEEechh
Q 018606 73 ATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-L-PYRSDFGDAAISIAV 147 (353)
Q Consensus 73 ~~~l~~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l-~~~~~~fD~Vi~~~v 147 (353)
..+...++++.+|||||||+|.++.. ..+..++|+|+|+.|++.|++++++++++|+.. + ++++++||+|++..+
T Consensus 5 ~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 5 ESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred HHHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 34444556788999999999997642 345688999999999999998899999999976 4 367789999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
+||+.+ +..+|+++.|+++ .+++.++
T Consensus 85 l~~~~d---~~~~l~e~~r~~~---~~ii~~p 110 (194)
T TIGR02081 85 LQATRN---PEEILDEMLRVGR---HAIVSFP 110 (194)
T ss_pred hHcCcC---HHHHHHHHHHhCC---eEEEEcC
Confidence 999988 6788999888765 4455543
No 58
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.42 E-value=3.1e-13 Score=125.93 Aligned_cols=116 Identities=23% Similarity=0.336 Sum_probs=88.4
Q ss_pred ccChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHH---c---CCe--EEEeeCCCCCC
Q 018606 66 FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVD---R---GHE--VLVADAVNLPY 134 (353)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~---~---~i~--~~~~D~~~l~~ 134 (353)
.-.|.++...+..+ .|.+|||||||+|.++-. ..|+ .|+|+|++.......+- . ... ++..-++.+|.
T Consensus 101 d~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 101 DWKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN 179 (315)
T ss_pred cchHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence 34567777777654 578999999999998632 3344 89999999876544322 1 122 22245677776
Q ss_pred CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccch
Q 018606 135 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 186 (353)
Q Consensus 135 ~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~ 186 (353)
.+.||+|+|.+||.|..+ +...|.+++..|+|||.+++.+...+....
T Consensus 180 -~~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLETLVIDGDEN 227 (315)
T ss_pred -cCCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence 789999999999999999 789999999999999999999877665544
No 59
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.42 E-value=5e-13 Score=125.40 Aligned_cols=91 Identities=35% Similarity=0.469 Sum_probs=75.6
Q ss_pred CCCEEEEECCcccccccc----CC---CcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606 81 SGSLVLDAGCGNGKYLGL----NP---DCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~~----~~---~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~ 151 (353)
...+|||+|||+|.++.. .+ +..++|+|+|+.|++.|+++ ++.+.++|+..+|+++++||+|+++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 447899999999997542 22 34899999999999999877 688999999999999999999998653
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 152 STESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 152 ~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+ ..+.++.|+|||||++++..+..
T Consensus 161 ~------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C------CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 24688999999999999987654
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.40 E-value=1.7e-12 Score=131.08 Aligned_cols=102 Identities=23% Similarity=0.267 Sum_probs=85.4
Q ss_pred CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCC--CCCCCCCCccEEEechhhhh
Q 018606 80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAV--NLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~--~l~~~~~~fD~Vi~~~vl~h 150 (353)
.++.+|||||||+|.++.. .....|+|+|+|+.|++.+++. ++.++++|+. .+++++++||+|++..+++|
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 3567999999999998642 3356999999999999988754 5789999986 46777889999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
+++.+ +..+++++.|+|||||++++......
T Consensus 116 l~~~~-~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 116 LSDKE-VENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred CCHHH-HHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 98754 67899999999999999999865543
No 61
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.38 E-value=7e-13 Score=118.98 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=87.6
Q ss_pred HHhhccccccccccChHHHHHHHhCCCCCC-EEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-C-------C
Q 018606 54 YDAIAPHFSSTRFAKWPKVATFLNSLPSGS-LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-G-------H 122 (353)
Q Consensus 54 yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~-~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-~-------i 122 (353)
|+..+.+|...|..+.-.....+....++. .++|||||+|.-+.. ...-.|+|+|+|+.||+.|++. + .
T Consensus 5 ~~~~a~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~ 84 (261)
T KOG3010|consen 5 FDKQAADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPS 84 (261)
T ss_pred ccccHHHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCc
Confidence 444555566655555455555555555554 899999999954432 2223899999999999999987 2 2
Q ss_pred eEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCc-EEEEEEcC
Q 018606 123 EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS-LVLITVWA 180 (353)
Q Consensus 123 ~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG-~lli~~~~ 180 (353)
.+...++..|--.+++.|+|++..++|++.. .++.+++.|+||+.| .+.+-.+.
T Consensus 85 ~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdl----e~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 85 TMSSDEMVDLLGGEESVDLITAAQAVHWFDL----ERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred cccccccccccCCCcceeeehhhhhHHhhch----HHHHHHHHHHcCCCCCEEEEEEcc
Confidence 3333444444444899999999999999984 789999999998776 66655554
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.38 E-value=5.8e-12 Score=111.21 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=73.1
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 149 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~ 149 (353)
++.+|||||||+|.++. ..+..+|+|+|+|+.|++.++++ +++++++|+..++. .+.||+|++.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh-hh
Confidence 47899999999998532 35668999999999999887754 47899999988753 67899999976 33
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+ ...+++.+.++|+|||.+++..
T Consensus 120 ---~---~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 120 ---S---LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ---C---HHHHHHHHHHhcCCCCEEEEEc
Confidence 3 4567888999999999999874
No 63
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.38 E-value=2.4e-13 Score=120.85 Aligned_cols=136 Identities=22% Similarity=0.308 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhhcccccc-----ccccChHHHHHHHhCCCCC--CEEEEECCccccccccC--CCcEEEEEeCCHHHHHH
Q 018606 46 EKKYVHRVYDAIAPHFSS-----TRFAKWPKVATFLNSLPSG--SLVLDAGCGNGKYLGLN--PDCFFVGCDISPSLIKI 116 (353)
Q Consensus 46 e~~~v~~~yd~~a~~y~~-----~~~~~~~~~~~~l~~l~~~--~~VLDvGCG~G~~~~~~--~~~~v~gvD~S~~~l~~ 116 (353)
...||...||+.+..|+. ..|.....+.+++.....| .++||+|||||..-... .-.+++|+|+|.+|+++
T Consensus 83 P~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~k 162 (287)
T COG4976 83 PSAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAK 162 (287)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHH
Confidence 357999999999999976 2355556777777765554 79999999999875432 22489999999999999
Q ss_pred HHHcCC--eEEEeeCCC-CC-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 117 CVDRGH--EVLVADAVN-LP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 117 a~~~~i--~~~~~D~~~-l~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
|.++++ .+.++|+.. ++ .....||+|++..|+.++.. +..++.-....|+|||.|.+++-.....
T Consensus 163 A~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 163 AHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred HHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 999964 455555543 22 45678999999999999998 7788999999999999999998665543
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.35 E-value=1.4e-12 Score=117.12 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=78.9
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeC-CCCC--CCCCCccEEEech
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADA-VNLP--YRSDFGDAAISIA 146 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~-~~l~--~~~~~fD~Vi~~~ 146 (353)
++.+|||||||+|.++. ..++..|+|+|+|+.|++.|+++ ++.++++|+ ..++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999998753 35678999999999999999874 578999999 6666 6778999999876
Q ss_pred hhhhcCCh-----hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 147 VLHHLSTE-----SRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 147 vl~h~~~~-----e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
...+.... .....+++++.++|||||.+++....
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 54332210 01357899999999999999998643
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.35 E-value=9.3e-12 Score=101.75 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=75.3
Q ss_pred CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCCCCCCccEEEech
Q 018606 79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISIA 146 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-l~~~~~~fD~Vi~~~ 146 (353)
+.++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.++++ +++++.+|+.. ++....+||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 4567899999999999753 34668999999999999998764 46777788765 333346899999976
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
..++ ...+++++.++|+|||.+++.+.
T Consensus 97 ~~~~------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 97 SGGL------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cchh------HHHHHHHHHHHcCCCCEEEEEec
Confidence 5432 45789999999999999999864
No 66
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.35 E-value=4.3e-12 Score=114.57 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=82.6
Q ss_pred HHHHHHHhCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCC
Q 018606 70 PKVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRS 136 (353)
Q Consensus 70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~ 136 (353)
..+......+.++.+|||||||+|.++.. .+...|+|+|+++ |.. ..++.++++|+...+ +.+
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~---~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP---IVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccC---CCCcEEEecCCCChHHHHHHHHHhCC
Confidence 34444444568889999999999997541 3457999999988 321 137899999999853 667
Q ss_pred CCccEEEechhhhhcCChh--------HHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 137 DFGDAAISIAVLHHLSTES--------RRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 137 ~~fD~Vi~~~vl~h~~~~e--------~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
+.||+|++..+.++...+. ....+|.++.++|+|||.+++.+|..+.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 8999999987666544321 0246899999999999999999887654
No 67
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.34 E-value=1.3e-11 Score=112.11 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhhccccccccccChHHHHHHHhC--CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606 45 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 45 ~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~--l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~ 120 (353)
.+.+++++.|++--.-|+..... +.+...+.. +.++.+||+.|||.|..+. +..|..|+|+|+|+..++.+.+.
T Consensus 7 ~~~~fW~~rw~~~~~~f~~~~pn--p~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 7 NNNQYWLDRWQNDDVGFCQESPN--EFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQ 84 (226)
T ss_pred CCHHHHHHHHhcCCCCCccCCCC--HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHH
Confidence 45667888888765555543333 333344433 3456899999999999654 36788999999999999997551
Q ss_pred -------------------CCeEEEeeCCCCCCC---CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 121 -------------------GHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 121 -------------------~i~~~~~D~~~l~~~---~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.++++++|+.+++.. .+.||+|+-.++++++++ +++.+.++.|.++|+|||.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 85 NTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 579999999998642 268999999999999975 457999999999999999999998
Q ss_pred cCCC
Q 018606 179 WAVE 182 (353)
Q Consensus 179 ~~~~ 182 (353)
+..+
T Consensus 164 ~~~~ 167 (226)
T PRK13256 164 MEHD 167 (226)
T ss_pred EecC
Confidence 7544
No 68
>PLN03075 nicotianamine synthase; Provisional
Probab=99.32 E-value=5.7e-12 Score=118.43 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=81.1
Q ss_pred CCCEEEEECCcccccc------ccCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 81 SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~------~~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
++.+|+|||||.|.++ ...++.+++|+|+++.+++.|++. +++|..+|+.+.+...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6689999999998653 236888999999999999999874 4899999998865335789999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+++++.... ..+++..+.+.|+|||.+++-.
T Consensus 203 -ALi~~dk~~-k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEE-KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -ccccccccc-HHHHHHHHHHhcCCCcEEEEec
Confidence 888884322 7899999999999999999986
No 69
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.32 E-value=1.1e-11 Score=118.33 Aligned_cols=127 Identities=23% Similarity=0.285 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhhc-----cccccc-------cccCh------HHHHHHHhCC--CCCCEEEEECCcccccccc--CCCc
Q 018606 45 LEKKYVHRVYDAIA-----PHFSST-------RFAKW------PKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NPDC 102 (353)
Q Consensus 45 ~e~~~v~~~yd~~a-----~~y~~~-------~~~~~------~~~~~~l~~l--~~~~~VLDvGCG~G~~~~~--~~~~ 102 (353)
.+++.+.++|+.++ ..|+.. ....| ..+..++... .++.+|||||||+|.++.. ..+.
T Consensus 88 ~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~ 167 (315)
T PLN02585 88 DDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA 167 (315)
T ss_pred HHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC
Confidence 45678888998763 334320 01122 2334444322 3578999999999997542 4567
Q ss_pred EEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhcccc
Q 018606 103 FFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK 170 (353)
Q Consensus 103 ~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkp 170 (353)
.|+|+|+|+.|++.|+++ ++.|..+|+..+ ++.||+|+|..+++|+++.. ...+++.+.+ +.+
T Consensus 168 ~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~-~~~ll~~l~~-l~~ 242 (315)
T PLN02585 168 IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDK-ADGMIAHLAS-LAE 242 (315)
T ss_pred EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHH-HHHHHHHHHh-hcC
Confidence 999999999999999876 135667776543 57899999999999988643 4566777765 445
Q ss_pred CcEEEEE
Q 018606 171 GSLVLIT 177 (353)
Q Consensus 171 gG~lli~ 177 (353)
||. +|.
T Consensus 243 g~l-iIs 248 (315)
T PLN02585 243 KRL-IIS 248 (315)
T ss_pred CEE-EEE
Confidence 544 444
No 70
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.32 E-value=1e-11 Score=111.84 Aligned_cols=91 Identities=23% Similarity=0.237 Sum_probs=73.6
Q ss_pred CCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 79 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
+.++.+|||||||+|.++.. .+..+|+|+|+++.|++.|+++ +++++.+|+.......+.||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 46778999999999997531 3356999999999999998875 2678899988755456799999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.++++++ .++.++|+|||+|++.+
T Consensus 150 ~~~~~~~---------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP---------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh---------HHHHHhcCcCcEEEEEE
Confidence 8877664 35778999999998875
No 71
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.31 E-value=6e-12 Score=108.90 Aligned_cols=76 Identities=29% Similarity=0.356 Sum_probs=69.0
Q ss_pred EEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEE
Q 018606 105 VGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 174 (353)
Q Consensus 105 ~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~l 174 (353)
+|+|+|++|++.|+++ +++++++|+.++|+++++||+|++..+++++.+ +..+|++++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEE
Confidence 5899999999999754 378999999999999999999999999999987 789999999999999999
Q ss_pred EEEEcCCCc
Q 018606 175 LITVWAVEQ 183 (353)
Q Consensus 175 li~~~~~~~ 183 (353)
++..|....
T Consensus 78 ~i~d~~~~~ 86 (160)
T PLN02232 78 SILDFNKSN 86 (160)
T ss_pred EEEECCCCC
Confidence 999987543
No 72
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.30 E-value=1.2e-11 Score=112.64 Aligned_cols=90 Identities=24% Similarity=0.321 Sum_probs=71.2
Q ss_pred CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 148 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl 148 (353)
..++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ .+.+..+|+ +..+++||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchh
Confidence 45678999999999997542 3456899999999999999876 367788873 3346789999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCc
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGS 172 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG 172 (353)
+|+++.. ...+++++.+.+++++
T Consensus 138 ~~~~~~~-~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 138 IHYPQED-AARMLAHLASLTRGSL 160 (230)
T ss_pred hcCCHHH-HHHHHHHHHhhcCCeE
Confidence 9987654 6788899988765433
No 73
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.29 E-value=2e-11 Score=116.38 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=83.1
Q ss_pred CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
.+.++.+|||||||+|.++. ..|+.+++++|+ +.+++.++++ +++++.+|+...+++. +|+|++.
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFC 222 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeE
Confidence 35677899999999999753 368889999997 7899888764 4789999998766643 6999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
.++|+..+.. ...+|++++++|+|||+++|..+...
T Consensus 223 ~~lh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 223 RILYSANEQL-STIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred hhhhcCChHH-HHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9999887543 57899999999999999999976543
No 74
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.29 E-value=3.6e-11 Score=110.00 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=82.2
Q ss_pred CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-CCCCCccEEEechhhh
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-YRSDFGDAAISIAVLH 149 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~-~~~~~fD~Vi~~~vl~ 149 (353)
..++.+|||||||+|.++.. ..+..++++|+++.+++.|+++ .+++..+|+..++ ..++.||+|++..+++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 45678999999999997532 3467899999999999998875 3567777777665 3457899999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
|+.+ +..+|..+.++|+|||.+++..+.
T Consensus 126 ~~~~---~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPD---PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCC---HHHHHHHHHHHcCCCcEEEEEecC
Confidence 9988 678999999999999999988764
No 75
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=2e-11 Score=109.67 Aligned_cols=135 Identities=24% Similarity=0.304 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhccccccccccChHHHHHHHhCC-CCCCEEEEECCcccccc----cc--CCCcEEEEEeCCHHHHHHHHH
Q 018606 47 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL-PSGSLVLDAGCGNGKYL----GL--NPDCFFVGCDISPSLIKICVD 119 (353)
Q Consensus 47 ~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l-~~~~~VLDvGCG~G~~~----~~--~~~~~v~gvD~S~~~l~~a~~ 119 (353)
..++..+|...-..|-..|.-..+..-.++... .+..+||+||||.|..+ .. .++..|+++|.|+.+++..++
T Consensus 36 ~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~ 115 (264)
T KOG2361|consen 36 SKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKK 115 (264)
T ss_pred hhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHh
Confidence 456777777666665444432222222222211 11128999999999953 23 445899999999999999988
Q ss_pred c------CCeEEEeeCCC----CCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 120 R------GHEVLVADAVN----LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 120 ~------~i~~~~~D~~~----l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
+ .+...+.|+.. -|...+++|+|+++.+|..+++.. ...++.++.++|||||.+++-+++.-
T Consensus 116 ~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 116 SSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred ccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecccc
Confidence 7 34445556553 346678999999999999998654 78999999999999999999998754
No 76
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.28 E-value=1.4e-11 Score=109.32 Aligned_cols=107 Identities=19% Similarity=0.227 Sum_probs=78.9
Q ss_pred HHHHHhCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCC
Q 018606 72 VATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDF 138 (353)
Q Consensus 72 ~~~~l~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~ 138 (353)
+.+....+.++.+|||+|||+|.++.. .+...|+|+|+|+.+ ...++.++++|+.+.+ ++.+.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 344455678899999999999997531 345689999999865 2247889999987643 45678
Q ss_pred ccEEEechh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 139 GDAAISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 139 fD~Vi~~~v--------l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
||+|++... ++|+...+....++..+.++|+|||++++..+..+
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~ 150 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE 150 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence 999998643 33333223356899999999999999999876543
No 77
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.27 E-value=6.1e-12 Score=112.26 Aligned_cols=100 Identities=24% Similarity=0.367 Sum_probs=77.9
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCCccEEEech
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIA 146 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~---~~~~~fD~Vi~~~ 146 (353)
...+|||||||+|.++. ..|+..++|+|++..|++.|+++ +++++++|+..++ ++++++|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45699999999999753 36788999999999999998765 6789999998654 4567899999876
Q ss_pred hhhhcCChh--H---HHHHHHHHHhccccCcEEEEEEcC
Q 018606 147 VLHHLSTES--R---RKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 147 vl~h~~~~e--~---~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
...|..... + ...+++++.++|||||.+++.+-.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 544432210 0 147899999999999999888643
No 78
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.27 E-value=2.7e-11 Score=109.94 Aligned_cols=133 Identities=21% Similarity=0.326 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhccccccccccChHHHHHHHhC--CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606 45 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 45 ~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~--l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~ 120 (353)
|+.+++++.|.+-..-|+.... -+.+..++.. ..++.+||..|||.|.-+. ...|..|+|+|+|+..++.+.+.
T Consensus 1 m~~~~W~~~w~~~~~~w~~~~~--~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e 78 (218)
T PF05724_consen 1 MDPEFWEERWQEGQTPWDQGEP--NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEE 78 (218)
T ss_dssp -HHHHHHHHHHTT--TT--TTS--THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCC--CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHH
Confidence 4678888999886665654333 3445555554 6777899999999998654 25688999999999999998432
Q ss_pred -------------------CCeEEEeeCCCCCCCC-CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 121 -------------------GHEVLVADAVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 121 -------------------~i~~~~~D~~~l~~~~-~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+++++++|+..++... +.||+|+-..+|+.++. ++|.+..+.+.++|+|||.+++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp-~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 79 NNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPP-EMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp CTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-G-GGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred hccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCH-HHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 2578899999987433 58999999999999975 45899999999999999995554443
No 79
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.26 E-value=3e-11 Score=106.22 Aligned_cols=101 Identities=19% Similarity=0.189 Sum_probs=78.6
Q ss_pred CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606 80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~ 151 (353)
.++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.++++ +++++.+|+...+ .++||+|+++..+++.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 3457899999999997542 2234899999999999999875 4677888887654 4589999999877766
Q ss_pred CChh------------------HHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 152 STES------------------RRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 152 ~~~e------------------~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
.+.. ....++.++.++|+|||.+++......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 5321 135689999999999999999876654
No 80
>PRK04266 fibrillarin; Provisional
Probab=99.26 E-value=5.3e-11 Score=108.65 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=72.2
Q ss_pred CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCC----CCCCCCccEEEe
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNL----PYRSDFGDAAIS 144 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l----~~~~~~fD~Vi~ 144 (353)
.+.++.+|||+|||+|.++. ..+...|+|+|+++.|++.+.++ ++.++.+|+... ++ .+.||+|++
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~ 147 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQ 147 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEE
Confidence 45689999999999999753 23356999999999988754332 788999998752 22 356999985
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
. +.++.....++.++.++|||||.++|.+..
T Consensus 148 d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 148 D-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred C-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 4 333322346789999999999999997543
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=6.2e-11 Score=107.27 Aligned_cols=93 Identities=23% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
.+.++.+|||||||+|.++.. .+..+|+++|+++.+++.|+++ +++++.+|+.......+.||+|++.
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 467889999999999997532 3457999999999999999886 5789999988766567899999998
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
..+.+++ ..+.+.|||||++++...
T Consensus 153 ~~~~~~~---------~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 153 AAGPDIP---------KPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCcccch---------HHHHHhhCCCcEEEEEEc
Confidence 7765442 346678999999988753
No 82
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.22 E-value=5.5e-11 Score=105.31 Aligned_cols=96 Identities=14% Similarity=0.193 Sum_probs=75.4
Q ss_pred CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
.+.++.+|||||||+|.++. ..++.+|+++|+++.+++.|+++ +++++.+|+. .++ .+.||+|++..
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~ 105 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGG 105 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECC
Confidence 45678899999999999743 35678999999999999999874 4678888764 233 35799999976
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
..++ ...++..+.++|+|||++++.....
T Consensus 106 ~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 106 SGGN------LTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred CccC------HHHHHHHHHHhcCCCeEEEEEEecH
Confidence 5443 3567899999999999999876543
No 83
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.21 E-value=9.4e-11 Score=106.20 Aligned_cols=93 Identities=24% Similarity=0.254 Sum_probs=73.9
Q ss_pred CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
.+.++.+|||||||+|.++.. .+...|+++|+++.+++.|+++ +++++.+|+.........||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 467889999999999997542 3346799999999999999876 5788999987755445789999988
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
....++ ...+.+.|+|||++++..-
T Consensus 154 ~~~~~~---------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 154 AAGPKI---------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred CCcccc---------cHHHHHhcCcCcEEEEEEc
Confidence 765544 3457789999999998753
No 84
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.20 E-value=9.4e-11 Score=113.02 Aligned_cols=105 Identities=26% Similarity=0.276 Sum_probs=82.9
Q ss_pred hCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606 77 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 147 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~v 147 (353)
..+.++.+|||+|||+|.++. ...+..++|+|+++.|++.|+.+ ++.+..+|+.++|++++.||+|++..-
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 356788999999999999753 24577999999999999988875 357899999999988889999999532
Q ss_pred h------hhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 148 L------HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 148 l------~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
. ......+....++.++.++|+|||++++.....
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 1 111111225789999999999999999887653
No 85
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.18 E-value=4.9e-11 Score=102.82 Aligned_cols=139 Identities=18% Similarity=0.235 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhhcccccccc--------ccChHHHHHHHh------CCCCC-CEEEEECCcccccccc--CC--CcEE
Q 018606 44 ELEKKYVHRVYDAIAPHFSSTR--------FAKWPKVATFLN------SLPSG-SLVLDAGCGNGKYLGL--NP--DCFF 104 (353)
Q Consensus 44 ~~e~~~v~~~yd~~a~~y~~~~--------~~~~~~~~~~l~------~l~~~-~~VLDvGCG~G~~~~~--~~--~~~v 104 (353)
.-.++|+.+.|+.--..|.... .....++..++. .+... .+|||+|||+|.++.. .. ...+
T Consensus 15 LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L 94 (227)
T KOG1271|consen 15 LGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKL 94 (227)
T ss_pred cchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCc
Confidence 3457899999988776665311 111123333332 12333 3999999999998742 22 2359
Q ss_pred EEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhhhcC-----ChhHHHHHHHHHHhccccC
Q 018606 105 VGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS-----TESRRKKAIEELVRVVKKG 171 (353)
Q Consensus 105 ~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~-----~~e~~~~~l~el~rvLkpg 171 (353)
+|+|.|+.+++.|+.. .|+|.+.|+..-.+..+.||+|+--+++..+. ...++...+..+.+.|+||
T Consensus 95 ~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~ 174 (227)
T KOG1271|consen 95 TGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG 174 (227)
T ss_pred cccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCC
Confidence 9999999999988764 28999999999778889999999987766543 2233466789999999999
Q ss_pred cEEEEEEcCCC
Q 018606 172 SLVLITVWAVE 182 (353)
Q Consensus 172 G~lli~~~~~~ 182 (353)
|+++|+.-+..
T Consensus 175 gifvItSCN~T 185 (227)
T KOG1271|consen 175 GIFVITSCNFT 185 (227)
T ss_pred cEEEEEecCcc
Confidence 99999975544
No 86
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.17 E-value=2.4e-10 Score=111.51 Aligned_cols=104 Identities=22% Similarity=0.245 Sum_probs=78.5
Q ss_pred HHhCCCC--CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCC
Q 018606 75 FLNSLPS--GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDF 138 (353)
Q Consensus 75 ~l~~l~~--~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~~~~~~ 138 (353)
++..++. +.+|||+|||+|.+.. ..|..+|+++|.|+.|++.|+++ +++++..|+... ++..+
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~ 298 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFR 298 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCC
Confidence 4444433 4699999999999742 36788999999999999999875 246777777542 34568
Q ss_pred ccEEEechhhhhcC--ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 139 GDAAISIAVLHHLS--TESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 139 fD~Vi~~~vl~h~~--~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
||+|+|+-.+|... +.....+++..+.++|+|||.+++...
T Consensus 299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 99999987665432 222256889999999999999999964
No 87
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.16 E-value=7.6e-11 Score=114.74 Aligned_cols=98 Identities=21% Similarity=0.313 Sum_probs=78.5
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC--CCCCCCccEEEechh
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAV 147 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l--~~~~~~fD~Vi~~~v 147 (353)
.+..+||||||+|.++. ..|+..++|+|++..|++.|.++ ++.++++|+..+ .++++++|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 45699999999999753 37889999999999999888765 678999998764 477899999998765
Q ss_pred hhhcCChhHH---HHHHHHHHhccccCcEEEEEE
Q 018606 148 LHHLSTESRR---KKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 148 l~h~~~~e~~---~~~l~el~rvLkpgG~lli~~ 178 (353)
..|.....|+ ..++.++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4443332111 579999999999999999876
No 88
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.16 E-value=2.5e-11 Score=98.67 Aligned_cols=99 Identities=27% Similarity=0.408 Sum_probs=76.5
Q ss_pred CCEEEEECCcccccccc--CC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCCccEEEechhh
Q 018606 82 GSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAVL 148 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~~--~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~--~~~~~fD~Vi~~~vl 148 (353)
|.+|||+|||+|.++.. .. ...++|+|+++..++.++.+ .++++++|+.... +++++||+|+++--.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 56899999999997542 22 58999999999999999986 4689999998865 778999999997655
Q ss_pred hhcCC-----hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 149 HHLST-----ESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 149 ~h~~~-----~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
..... ......+++++.++|||||.+++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 43211 112467899999999999999998753
No 89
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.15 E-value=2.4e-10 Score=102.20 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=75.8
Q ss_pred CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCCccEEE
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAI 143 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~~~~~~fD~Vi 143 (353)
.+.++.+|||+|||+|.++. . .++.+|+++|+++.|++.++++ ++.++.+|+.+. +...+.||+|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 46788999999999998743 2 3557999999999999988765 357788888763 33346899999
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+... ... +..++.++.++|+|||++++.....
T Consensus 117 ~~~~---~~~---~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 117 IGGG---SEK---LKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred ECCC---ccc---HHHHHHHHHHHcCCCcEEEEEeecH
Confidence 8542 222 5789999999999999999866543
No 90
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.13 E-value=2.7e-10 Score=107.90 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=72.7
Q ss_pred CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc----C----CeEEEeeCCCCCCCCCCccEEEechh
Q 018606 79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYRSDFGDAAISIAV 147 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~l~~~~~~fD~Vi~~~v 147 (353)
..++.+|||+|||+|.++.. ....+|+|+|+++.|++.|+++ + +.+...+. .+...+.||+|+++..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecC
Confidence 45789999999999987532 3335899999999999999886 2 23344442 2334678999999765
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
.++ ...++.++.++|||||.++++.+..++
T Consensus 235 ~~~------l~~ll~~~~~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 235 AEV------IKELYPQFSRLVKPGGWLILSGILETQ 264 (288)
T ss_pred HHH------HHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence 432 457899999999999999998765443
No 91
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.12 E-value=5.7e-10 Score=107.93 Aligned_cols=97 Identities=24% Similarity=0.255 Sum_probs=76.6
Q ss_pred CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606 82 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~ 151 (353)
..+|||+|||+|.+.. ..+...|+++|+|+.|++.|+++ + .+++.+|+... ..+.||+|+++..+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCC
Confidence 4589999999999753 35778999999999999999875 2 45677776552 25789999999888863
Q ss_pred CC--hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 152 ST--ESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 152 ~~--~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.. ......++.++.+.|+|||.++|....
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 32 223578999999999999999998644
No 92
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.12 E-value=2.5e-10 Score=101.17 Aligned_cols=103 Identities=21% Similarity=0.274 Sum_probs=71.9
Q ss_pred ccChHHHHHHHhCCCCCCEEEEECCccccccccC-CCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEe
Q 018606 66 FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN-PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 144 (353)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~~-~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~ 144 (353)
..+...++..+...++...|.|+|||.+.++... .+..|.-.|+-.. +-.+..+|+.++|+++++.|++|+
T Consensus 57 ~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~--------n~~Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 57 VNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP--------NPRVTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp S-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-S--------STTEEES-TTS-S--TT-EEEEEE
T ss_pred CCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCC--------CCCEEEecCccCcCCCCceeEEEE
Confidence 4555678888888888889999999999998754 4568999998653 456899999999999999999999
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+.+|.... ...+|.|..|+|||||.|.|..-.
T Consensus 129 cLSLMGTn----~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 129 CLSLMGTN----WPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp ES---SS-----HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EhhhhCCC----cHHHHHHHHheeccCcEEEEEEec
Confidence 88876544 688999999999999999999644
No 93
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.11 E-value=2.6e-10 Score=109.57 Aligned_cols=103 Identities=25% Similarity=0.297 Sum_probs=76.1
Q ss_pred CCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEEeeCCCCC----CC-
Q 018606 81 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLP----YR- 135 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~~D~~~l~----~~- 135 (353)
++.+|||+|||-|.-+.. ..-..++|+|+|...|+.|+++ ...|+.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999999987642 3445999999999999999886 1245777776421 23
Q ss_pred -CCCccEEEechhhhhc-CChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 136 -SDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 136 -~~~fD~Vi~~~vl~h~-~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
...||+|-|..+||+. .+.+....+|..+...|+|||+++.+++..+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 3599999999999995 45566667999999999999999999987543
No 94
>PHA03411 putative methyltransferase; Provisional
Probab=99.11 E-value=6.5e-10 Score=103.27 Aligned_cols=132 Identities=15% Similarity=0.083 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhhccccccccccChHHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-
Q 018606 46 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR- 120 (353)
Q Consensus 46 e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~- 120 (353)
+++.+-+.|....-+-...-+.+..-+..++.....+.+|||+|||+|.+.. ..++.+|+|+|+++.|++.|+++
T Consensus 29 ~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 29 EKEFCYNNYHGDGLGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred cHHHHHHhcccccccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence 5566666665543111111233443333444344456799999999998743 23457999999999999999987
Q ss_pred -CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhH-----------------HHHHHHHHHhccccCcEEEEEE
Q 018606 121 -GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR-----------------RKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 121 -~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~-----------------~~~~l~el~rvLkpgG~lli~~ 178 (353)
+++++++|+..+.. ...||+|+++-.++|+...++ ....+.....+|+|+|.+.+..
T Consensus 109 ~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 109 PEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred cCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 68899999988753 468999999888888654322 1356777888999999777774
No 95
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.10 E-value=5.7e-10 Score=99.55 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=73.6
Q ss_pred CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-l~~~~~~fD~Vi~~ 145 (353)
.+.++.+|||+|||+|.++. ..++..|+|+|+++.|++.|+++ +++++.+|+.. ++.-...+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 44678899999999999743 25678999999999999999875 46788888754 22212345666543
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
. ... ...++.++.++|+|||++++..+..+
T Consensus 117 ~----~~~---~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 117 G----GRP---IKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred C----CcC---HHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 2 122 56899999999999999999987644
No 96
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.09 E-value=3.4e-10 Score=105.50 Aligned_cols=116 Identities=23% Similarity=0.326 Sum_probs=90.6
Q ss_pred cChHHHHHHHhCCCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHc-------------CCeEEEeeCC
Q 018606 67 AKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------------GHEVLVADAV 130 (353)
Q Consensus 67 ~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~-------------~i~~~~~D~~ 130 (353)
..|-+-..+-...+++..++|+|||-|.-+.. ..+ ..++|+|++...++.|+++ ...|+.+|..
T Consensus 103 NNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 103 NNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred hHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 44444333333567889999999999986643 233 4899999999999999987 1478899987
Q ss_pred C------CCCCCCCccEEEechhhhh-cCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 131 N------LPYRSDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 131 ~------l~~~~~~fD~Vi~~~vl~h-~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
. +++++.+||+|-|-.++|+ +.+.+....+|..+.+.|+|||.++-+++..+
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 5 4455666999999999998 56677788899999999999999999987643
No 97
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.09 E-value=3.1e-10 Score=99.08 Aligned_cols=99 Identities=25% Similarity=0.363 Sum_probs=75.2
Q ss_pred CCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc----C---CeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606 81 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYRSDFGDAAISIAVLH 149 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~D~~~l~~~~~~fD~Vi~~~vl~ 149 (353)
++.+|||+|||+|.+. ...+...|+++|+++.+++.++++ + ++++..|.... .+++.||+|+++--++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccchh
Confidence 5679999999999864 236777899999999999999886 2 67888888663 3378999999986654
Q ss_pred hcCC--hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 150 HLST--ESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 150 h~~~--~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.-.. ......++.+..+.|+|||.+++..-.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 3332 122578899999999999999876543
No 98
>PRK14967 putative methyltransferase; Provisional
Probab=99.07 E-value=6.6e-10 Score=101.25 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=73.7
Q ss_pred CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606 79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 149 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~ 149 (353)
+.++.+|||+|||+|.++.. ....+++|+|+++.+++.++++ ++.++.+|+... ++++.||+|+++--..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCC
Confidence 46778999999999997532 2224999999999999988875 356778887653 4567899999974322
Q ss_pred hcCC------------------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 150 HLST------------------ESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 150 h~~~------------------~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.... .+....++.++.++|||||++++..-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 1110 011356788999999999999986544
No 99
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.06 E-value=1.2e-09 Score=100.56 Aligned_cols=97 Identities=26% Similarity=0.343 Sum_probs=73.6
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech---
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA--- 146 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~--- 146 (353)
.+.+|||+|||+|.++. ..+...++|+|+++.+++.|+++ ++.++.+|+.. ++++++||+|+++-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 34599999999999753 35677999999999999999875 37889999876 45578999999843
Q ss_pred ---hhhhcCChh-----------------HHHHHHHHHHhccccCcEEEEEE
Q 018606 147 ---VLHHLSTES-----------------RRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 147 ---vl~h~~~~e-----------------~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.++++.... ....++.++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 222222111 02467899999999999998865
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=99.06 E-value=1.2e-09 Score=95.95 Aligned_cols=100 Identities=23% Similarity=0.294 Sum_probs=75.3
Q ss_pred CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------C--CeEEEeeCCCCCCCCCCccEEEechhh
Q 018606 80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLPYRSDFGDAAISIAVL 148 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl 148 (353)
.++.+|||+|||+|.++.. ..+..++|+|+|+.+++.++++ + +.++.+|+.. ++.+..||+|++...+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 5678999999999997542 3378999999999999998764 1 7788888776 3445689999986543
Q ss_pred hhcC------------------ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 149 HHLS------------------TESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 149 ~h~~------------------~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.+.. .......+++++.++|+|||.+++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 2211 1222466899999999999999887654
No 101
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.05 E-value=7.1e-10 Score=85.88 Aligned_cols=92 Identities=36% Similarity=0.509 Sum_probs=75.3
Q ss_pred EEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCCccEEEechhhhhcC
Q 018606 84 LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 84 ~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~-~~~~fD~Vi~~~vl~h~~ 152 (353)
+|||+|||+|.++.. .....++++|+++.++..+++. .+.++..|+.+... ..+.||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 489999999997542 3567999999999999888722 46888888887653 56789999999999884
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEE
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
.+....++..+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 222788999999999999999886
No 102
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.05 E-value=1e-09 Score=99.12 Aligned_cols=93 Identities=18% Similarity=0.115 Sum_probs=72.3
Q ss_pred CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 148 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl 148 (353)
.+.++.+|||||||+|.++.. .....++++|+++.+++.|+++ ++++..+|........+.||+|++...+
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 456788999999999986532 1124899999999999999875 4788889876533334789999998876
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
+++ ...+.+.|+|||++++...
T Consensus 155 ~~~---------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 PEI---------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hhh---------hHHHHHhcCCCcEEEEEEc
Confidence 554 2346789999999999876
No 103
>PTZ00146 fibrillarin; Provisional
Probab=99.04 E-value=1.2e-09 Score=102.46 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=72.4
Q ss_pred CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHH----HHHHHHHc-CCeEEEeeCCCC---CCCCCCccEEEe
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNL---PYRSDFGDAAIS 144 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~----~l~~a~~~-~i~~~~~D~~~l---~~~~~~fD~Vi~ 144 (353)
.+.++.+|||+|||+|.++.. .+...|+++|+++. |++.++++ ++.++.+|+... .....+||+|++
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 357899999999999997642 33568999999986 56666654 899999998642 223457999999
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
... .++ ....++.++.++|||||.|+|.
T Consensus 209 Dva---~pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA---QPD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC---Ccc--hHHHHHHHHHHhccCCCEEEEE
Confidence 764 232 2456777899999999999995
No 104
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.02 E-value=6.9e-10 Score=102.92 Aligned_cols=94 Identities=23% Similarity=0.326 Sum_probs=67.2
Q ss_pred CCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~ 151 (353)
+.++.+|||+|||+|.++.. ..+ ..|+|+|+|+.+++.|+++ ++. +...++..+.+||+|+++...+.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~~- 191 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILANP- 191 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHHH-
Confidence 46789999999999986432 223 3699999999999999876 331 11112222237999998643221
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 152 STESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 152 ~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
...++.++.++|||||+++++.+..+
T Consensus 192 -----~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 192 -----LLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 45789999999999999999876543
No 105
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.00 E-value=8e-10 Score=99.62 Aligned_cols=100 Identities=24% Similarity=0.277 Sum_probs=73.3
Q ss_pred HHHHHHhCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCC
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDF 138 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~ 138 (353)
.+...+ .+.+|.+|||||||+|.++.. .+...|+++|+.+.+++.|+++ ++.++.+|..........
T Consensus 63 ~~l~~L-~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ap 141 (209)
T PF01135_consen 63 RMLEAL-DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAP 141 (209)
T ss_dssp HHHHHT-TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-S
T ss_pred HHHHHH-hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCC
Confidence 334444 378999999999999998642 4566899999999999999887 678999998764444578
Q ss_pred ccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
||.|++.+....++ ..+.+.|++||++++-.-.
T Consensus 142 fD~I~v~~a~~~ip---------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 142 FDRIIVTAAVPEIP---------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp EEEEEESSBBSS-----------HHHHHTEEEEEEEEEEESS
T ss_pred cCEEEEeeccchHH---------HHHHHhcCCCcEEEEEEcc
Confidence 99999988765443 2366789999999988753
No 106
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.99 E-value=2.9e-09 Score=104.49 Aligned_cols=105 Identities=22% Similarity=0.245 Sum_probs=75.9
Q ss_pred HHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCC-CCCCccEEE
Q 018606 75 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPY-RSDFGDAAI 143 (353)
Q Consensus 75 ~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~-~~~~fD~Vi 143 (353)
.+..++++.+|||+|||+|.++. ..++..++|+|+|+.|++.|+++ +++++++|+....+ ..++||+|+
T Consensus 245 aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 245 VLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred hhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEE
Confidence 33455667799999999998743 35778999999999999999886 47889999866433 245799999
Q ss_pred echhh-----hhcCC-----------------hhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 144 SIAVL-----HHLST-----------------ESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 144 ~~~vl-----~h~~~-----------------~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
|+--. .++.. .+-...++..+.+.|+|||.+++...
T Consensus 325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 94311 00100 01134677788899999999887663
No 107
>PRK04457 spermidine synthase; Provisional
Probab=98.99 E-value=1.5e-09 Score=101.41 Aligned_cols=104 Identities=15% Similarity=0.289 Sum_probs=77.6
Q ss_pred CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCCccEEEec
Q 018606 79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAISI 145 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~~~~~~fD~Vi~~ 145 (353)
.+++.+|||||||+|.++. ..++.+++++|+++.+++.|++. +++++.+|+... .-..+.||+|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4556799999999999753 36788999999999999999975 367888997653 2224689999985
Q ss_pred hhh-hhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 146 AVL-HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 146 ~vl-~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
..- ...+......++++++.++|+|||++++..|...
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 311 1111111126899999999999999999887654
No 108
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.99 E-value=3.1e-09 Score=96.44 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=82.2
Q ss_pred ccChHHHHHHHhCCCCCCEEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEec
Q 018606 66 FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 66 ~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
..+...++..|...+....|.|+|||-+.++.. ....|+.+|+-+. +-+++.+|+.++|+++++.|+++++
T Consensus 165 ~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~--------~~~V~~cDm~~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 165 ENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-ERHKVHSFDLVAV--------NERVIACDMRNVPLEDESVDVAVFC 235 (325)
T ss_pred CChHHHHHHHHHhCcCceEEEecccchhhhhhc-cccceeeeeeecC--------CCceeeccccCCcCccCcccEEEee
Confidence 344556777777777778999999999999863 2347888887432 5689999999999999999999998
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.+|.... ...++.|+.|+|++||.+.|....
T Consensus 236 LSLMgtn----~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 236 LSLMGTN----LADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred Hhhhccc----HHHHHHHHHHHhccCceEEEEehh
Confidence 7776443 688999999999999999998644
No 109
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.97 E-value=2.7e-09 Score=100.83 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech--
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA-- 146 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~-- 146 (353)
++.+|||+|||+|.++. ..++..|+|+|+|+.+++.|+++ ++.++.+|+.. ++++++||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 45799999999999753 35678999999999999999876 36789999864 23456899999851
Q ss_pred ----hhhhcCC----------------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 147 ----VLHHLST----------------ESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 147 ----vl~h~~~----------------~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.+.++.. .+....++.++.++|+|||++++.+..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1111110 012357789999999999999988753
No 110
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=5.5e-09 Score=104.27 Aligned_cols=106 Identities=22% Similarity=0.281 Sum_probs=78.7
Q ss_pred CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~--~~~~~fD~Vi~~ 145 (353)
...+|.+|||+|||+|..+. ..++..|+|+|+++.+++.++++ .+.++++|+..++ +..++||.|++.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 45688999999999998643 23447999999999999999876 3578889998754 345789999953
Q ss_pred h------hhh------hcCChhH-------HHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 146 A------VLH------HLSTESR-------RKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 146 ~------vl~------h~~~~e~-------~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
. ++. +....++ ...+|..+.++|||||++++++.+...
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 2 221 1122211 247899999999999999998876544
No 111
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=3.7e-09 Score=106.01 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
...+|.+|||+|||+|..+. . ..+..|+|+|+|+.+++.++++ +++++.+|+..++ ++++||+|++.
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D 325 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLD 325 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEc
Confidence 45678999999999997432 2 3456999999999999998876 3678889988765 45789999962
Q ss_pred ------hhhh------hcCChh-------HHHHHHHHHHhccccCcEEEEEEcCCCccc
Q 018606 146 ------AVLH------HLSTES-------RRKKAIEELVRVVKKGSLVLITVWAVEQED 185 (353)
Q Consensus 146 ------~vl~------h~~~~e-------~~~~~l~el~rvLkpgG~lli~~~~~~~~~ 185 (353)
+++. +..+.+ ....+|.++.+.|||||++++.+.+.....
T Consensus 326 ~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~E 384 (445)
T PRK14904 326 APCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEE 384 (445)
T ss_pred CCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 1221 111111 134689999999999999999998876543
No 112
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.96 E-value=4.3e-09 Score=99.47 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=73.9
Q ss_pred CEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec-----
Q 018606 83 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI----- 145 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~----- 145 (353)
.+|||+|||+|.++. ..++..|+|+|+|+.+++.|+++ +++++.+|+.. +++...||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 689999999999743 35678999999999999999885 27889999876 3444589999995
Q ss_pred --------hhhhhcCC---------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 146 --------AVLHHLST---------ESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 146 --------~vl~h~~~---------~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.++.|-+. .+....++.++.+.|+|||.+++.+..
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 12233221 112567899999999999999888754
No 113
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.95 E-value=3.1e-09 Score=97.76 Aligned_cols=101 Identities=23% Similarity=0.289 Sum_probs=82.9
Q ss_pred CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~ 152 (353)
.+.+..+|+|||+|+|.++. ..|+.+++.+|+ +..++.+++. +++++.+|+. -+++. +|+++...+||+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 35566799999999999863 489999999998 8888887776 7899999998 66665 99999999999999
Q ss_pred ChhHHHHHHHHHHhccccC--cEEEEEEcCCCc
Q 018606 153 TESRRKKAIEELVRVVKKG--SLVLITVWAVEQ 183 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpg--G~lli~~~~~~~ 183 (353)
+.+ ...+|+++++.|+|| |+|+|..+-...
T Consensus 173 d~~-~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 173 DED-CVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp HHH-HHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hHH-HHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 765 789999999999999 999999766443
No 114
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=5.5e-09 Score=104.46 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=81.2
Q ss_pred CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC----CCCCCccE
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP----YRSDFGDA 141 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~----~~~~~fD~ 141 (353)
...+|.+|||+|||+|..+. . .....|+++|+++.+++.++++ ++.++.+|+..++ +..++||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 45678999999999998642 2 3456999999999999998875 4678889998775 44678999
Q ss_pred EEec------hhhhhcCCh------hH-------HHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 142 AISI------AVLHHLSTE------SR-------RKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 142 Vi~~------~vl~h~~~~------e~-------~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
|++. +++++-++. ++ ..++|.++.++|||||+++.++.+...
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 9973 355544331 11 357899999999999999988876644
No 115
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.94 E-value=7.5e-09 Score=90.43 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=81.9
Q ss_pred CCCCCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
.+.++.+++|||||+|... ...|..+|+++|.++++++..+++ ++.++.+|+...-....++|+|+..+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 5678999999999999964 347889999999999999888776 67889998876422223799999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
. - + ...+|+.+...|||||++++..-..+..
T Consensus 111 g-~---~---i~~ile~~~~~l~~ggrlV~naitlE~~ 141 (187)
T COG2242 111 G-G---N---IEEILEAAWERLKPGGRLVANAITLETL 141 (187)
T ss_pred C-C---C---HHHHHHHHHHHcCcCCeEEEEeecHHHH
Confidence 7 2 2 5678999999999999999998776653
No 116
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=4.7e-09 Score=104.75 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=81.8
Q ss_pred HhCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCCccEE
Q 018606 76 LNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAA 142 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~-~~~~~fD~V 142 (353)
+..+.+|.+|||+|||+|..+. . .++..|+++|+++.+++.++++ ++.+.++|+..++ +..++||.|
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEE
Confidence 3456788999999999997532 2 3567999999999999999876 3578889988776 446789999
Q ss_pred Eec------hhhhhcCC------h-------hHHHHHHHHHHhccccCcEEEEEEcCCCccc
Q 018606 143 ISI------AVLHHLST------E-------SRRKKAIEELVRVVKKGSLVLITVWAVEQED 185 (353)
Q Consensus 143 i~~------~vl~h~~~------~-------e~~~~~l~el~rvLkpgG~lli~~~~~~~~~ 185 (353)
++. +++..-++ . ....++|..+.+.|||||.++.++.+...+.
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eE 373 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEE 373 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhh
Confidence 972 22221111 0 0136779999999999999999998876543
No 117
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.93 E-value=4.1e-09 Score=100.58 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=72.8
Q ss_pred CEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech----
Q 018606 83 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA---- 146 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~---- 146 (353)
.+|||+|||+|.++. ..++..|+|+|+|+.+++.|+++ +++++.+|+.. +++.++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 689999999999753 35678999999999999999876 26789999765 23456899999851
Q ss_pred --hh-------hhcCC---------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 147 --VL-------HHLST---------ESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 147 --vl-------~h~~~---------~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.+ +|-+. .+....++.++.++|+|||++++....
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 11 11111 122457899999999999999987643
No 118
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.92 E-value=1.2e-08 Score=94.66 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=72.4
Q ss_pred CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCC-C-CCCCCccEEEech-----
Q 018606 82 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNL-P-YRSDFGDAAISIA----- 146 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l-~-~~~~~fD~Vi~~~----- 146 (353)
+.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ +++++++|+... + ...+.||+|+++-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 4589999999998742 35677999999999999999876 578999998753 2 1135799999853
Q ss_pred -hhhhcCCh-----------------hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 147 -VLHHLSTE-----------------SRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 147 -vl~h~~~~-----------------e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.+..+++. +-...++..+.++|+|||++++..-.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 12222211 11347778888999999999988653
No 119
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.91 E-value=6.8e-09 Score=97.09 Aligned_cols=110 Identities=20% Similarity=0.173 Sum_probs=80.2
Q ss_pred HHhCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEE
Q 018606 75 FLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAA 142 (353)
Q Consensus 75 ~l~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~V 142 (353)
.+..+.+|.+|||+|||+|..+. . .....|+++|+++.+++.++++ ++.++..|+..++...+.||+|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEE
Confidence 34456788999999999999652 2 2346999999999999998876 4578888887766555679999
Q ss_pred Eech------hhhhcCC------hh-------HHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 143 ISIA------VLHHLST------ES-------RRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 143 i~~~------vl~h~~~------~e-------~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
++.. ++.+-++ .+ ...++|..+.+.|||||+++.++-+....
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 9732 2222111 11 13569999999999999999887666544
No 120
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.91 E-value=7.4e-09 Score=99.21 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCCCCCEEEEECCcccccccc----C-CCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~----~-~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
.+.++.+|||||||+|.++.. . ....|+|+|+++.|++.|+++ ++.++.+|+...+...+.||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 356788999999999997532 2 235799999999999998874 4678889987765555789999998
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
..+.+++ ..+.+.|+|||++++..
T Consensus 157 ~g~~~ip---------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEVP---------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHhH---------HHHHHhcCCCCEEEEEe
Confidence 7655442 23668899999988865
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.90 E-value=1e-08 Score=102.29 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=78.7
Q ss_pred CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----CCe--E--EEeeCCCCCC--CCCCccEEE
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----GHE--V--LVADAVNLPY--RSDFGDAAI 143 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~i~--~--~~~D~~~l~~--~~~~fD~Vi 143 (353)
...+|.+|||+|||+|..+. ..+...|+|+|+++.+++.++++ ++. + ..+|....+. ..++||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 45678999999999997542 23467999999999999998876 442 3 4456554443 467899999
Q ss_pred e------chhhhhcCCh------h-------HHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 144 S------IAVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 144 ~------~~vl~h~~~~------e-------~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
+ .+++++.++. + ...++|.++.++|||||++++++.+....
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE 374 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 6 3456554431 1 13679999999999999999999887543
No 122
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.88 E-value=1.2e-08 Score=95.45 Aligned_cols=99 Identities=26% Similarity=0.300 Sum_probs=73.5
Q ss_pred CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech-
Q 018606 79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA- 146 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~- 146 (353)
..++.+|||+|||+|.++. ..+...++|+|+|+.+++.|+++ ++.++.+|+... +..++||+|++.-
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 3466799999999998643 35678999999999999999875 478888888553 3357899999842
Q ss_pred -----hhhhcCC-----------------hhHHHHHHHHHHhccccCcEEEEEE
Q 018606 147 -----VLHHLST-----------------ESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 147 -----vl~h~~~-----------------~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.++.+.. .+....++.++.++|+|||.+++..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1111111 1124578888999999999999864
No 123
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.87 E-value=1.1e-08 Score=93.58 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=77.4
Q ss_pred CCEEEEECCcccccccc-CCC-cEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHH
Q 018606 82 GSLVLDAGCGNGKYLGL-NPD-CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~~-~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~ 159 (353)
..++||||+|.|..+.. .+. ..|+++|.|+.|....+++|++++..|- ..-.+..||+|.|.++|..-.. +..
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~--w~~~~~~fDvIscLNvLDRc~~---P~~ 169 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDD--WQQTDFKFDVISCLNVLDRCDR---PLT 169 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhh--hhccCCceEEEeehhhhhccCC---HHH
Confidence 46899999999998754 222 3899999999999999999988765443 3333568999999999988777 789
Q ss_pred HHHHHHhccccCcEEEEEEc
Q 018606 160 AIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 160 ~l~el~rvLkpgG~lli~~~ 179 (353)
+|++|++.|+|+|++++.+-
T Consensus 170 LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEE
Confidence 99999999999999998863
No 124
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.2e-09 Score=92.36 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=76.4
Q ss_pred CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 148 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl 148 (353)
.+.++.+|||||||+|..+.. .-..+|+.+|+.+.+.+.|+++ ++.+.++|...---....||.|+..+..
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence 578899999999999998653 2223999999999999999986 6889999988754445899999999987
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
..++. .+.+.|++||++++-+-
T Consensus 149 ~~vP~---------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 149 PEVPE---------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCH---------HHHHhcccCCEEEEEEc
Confidence 77764 25677899999999876
No 125
>PHA03412 putative methyltransferase; Provisional
Probab=98.86 E-value=2.7e-08 Score=90.61 Aligned_cols=128 Identities=17% Similarity=0.113 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhccccc--cccccChHHHHHHH-hCCCCCCEEEEECCcccccccc-------CCCcEEEEEeCCHHHH
Q 018606 45 LEKKYVHRVYDAIAPHFS--STRFAKWPKVATFL-NSLPSGSLVLDAGCGNGKYLGL-------NPDCFFVGCDISPSLI 114 (353)
Q Consensus 45 ~e~~~v~~~yd~~a~~y~--~~~~~~~~~~~~~l-~~l~~~~~VLDvGCG~G~~~~~-------~~~~~v~gvD~S~~~l 114 (353)
.+++.+.+-|..-+-.-. ...+-....++..+ .....+.+|||+|||+|.++.. .+...|+|+|+++.++
T Consensus 10 ~~~~f~~~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al 89 (241)
T PHA03412 10 EEKLFIIENFHEGAFTNNSELGAFFTPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY 89 (241)
T ss_pred HHHHHHHhhcccccccccccCCccCCCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH
Confidence 456677666655332211 12222222333322 2233467999999999997531 2356999999999999
Q ss_pred HHHHHc--CCeEEEeeCCCCCCCCCCccEEEechhhhhcC---------ChhHHHHHHHHHHhccccCcE
Q 018606 115 KICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS---------TESRRKKAIEELVRVVKKGSL 173 (353)
Q Consensus 115 ~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~---------~~e~~~~~l~el~rvLkpgG~ 173 (353)
+.|+++ ++.++.+|+...++ +++||+||++--..-+. ...-...++....+++++|+.
T Consensus 90 ~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 90 KLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred HHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999987 68899999987665 56899999954332111 112145688888897777664
No 126
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1e-08 Score=96.43 Aligned_cols=99 Identities=23% Similarity=0.317 Sum_probs=72.3
Q ss_pred CCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc----CCe----EEEeeCCCCCCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----GHE----VLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~----~i~----~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
.+.+|.+|||+|||+|.++. ..-| ..++|+|+.+..++.|+++ ++. ....+....+ ..+.||+|+++-
T Consensus 159 ~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANI 237 (300)
T COG2264 159 LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANI 237 (300)
T ss_pred hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehh
Confidence 34688999999999999854 2344 4799999999999999987 444 2222222222 236999999975
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
| .+. ...+..++.+.|||||+++++-.-.++
T Consensus 238 -L---A~v--l~~La~~~~~~lkpgg~lIlSGIl~~q 268 (300)
T COG2264 238 -L---AEV--LVELAPDIKRLLKPGGRLILSGILEDQ 268 (300)
T ss_pred -h---HHH--HHHHHHHHHHHcCCCceEEEEeehHhH
Confidence 2 222 568899999999999999999755444
No 127
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.84 E-value=1.5e-08 Score=92.93 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=78.1
Q ss_pred CCCCCCEEEEECCcccccc---c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCCccEEE
Q 018606 78 SLPSGSLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAI 143 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~---~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~--~~~~~fD~Vi 143 (353)
..+...+|||+|||+|... . ..+.+.++|+|+.+.|.+.|++. +++++++|+.++. ....+||+|+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 4445789999999999852 2 23558999999999999999986 6899999998864 3345799999
Q ss_pred echhhh----------------hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 144 SIAVLH----------------HLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 144 ~~~vl~----------------h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
|+--.. |...- ..+.+++...++|||||.+.+....
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~-~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITL-DLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcC-CHHHHHHHHHHHccCCCEEEEEecH
Confidence 943221 11111 1678899999999999999998654
No 128
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.83 E-value=9.3e-09 Score=91.79 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=67.9
Q ss_pred CCEEEEECCcccc--cc------c---c--CCCcEEEEEeCCHHHHHHHHHc----------------------------
Q 018606 82 GSLVLDAGCGNGK--YL------G---L--NPDCFFVGCDISPSLIKICVDR---------------------------- 120 (353)
Q Consensus 82 ~~~VLDvGCG~G~--~~------~---~--~~~~~v~gvD~S~~~l~~a~~~---------------------------- 120 (353)
.-+|+..||++|. |. . . ....+|+|+|+|+.+|+.|++-
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 3599999999998 21 1 1 1247999999999999999962
Q ss_pred -------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 121 -------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 121 -------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.+.|...|+.+.+...+.||+|+|-+||.++.... +.++++.+++.|+|||.|++..
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-QQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-HHHHHHHHGGGEEEEEEEEE-T
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-HHHHHHHHHHHcCCCCEEEEec
Confidence 47889999988444568999999999999998655 6899999999999999998873
No 129
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.82 E-value=3e-08 Score=93.40 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=75.8
Q ss_pred CEEEEECCcccc--cc------cc----CCCcEEEEEeCCHHHHHHHHHc------------------------------
Q 018606 83 SLVLDAGCGNGK--YL------GL----NPDCFFVGCDISPSLIKICVDR------------------------------ 120 (353)
Q Consensus 83 ~~VLDvGCG~G~--~~------~~----~~~~~v~gvD~S~~~l~~a~~~------------------------------ 120 (353)
-+|+..||+||. |. .. ....+|+|+|+|..+|+.|++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 699999999998 21 11 1247899999999999999863
Q ss_pred --------CCeEEEeeCCCCCCC-CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 121 --------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 121 --------~i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.+.|.+.|+...+++ .+.||+|+|.+++.|+.... +.+++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~-~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT-QERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH-HHHHHHHHHHHhCCCcEEEEeC
Confidence 246677777765443 57899999999999997655 7899999999999999887763
No 130
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.81 E-value=9.7e-09 Score=89.47 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=69.4
Q ss_pred CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~ 151 (353)
+.++.+|||||||+|.++.. ..+.+++|+|+++.|++.++++ +++++.+|+.++++++..||.|+++--.+ +
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~-~ 89 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN-I 89 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc-c
Confidence 45678999999999998642 3367999999999999999876 58899999999988777799998865433 3
Q ss_pred CChhHHHHHHHHHHhc--cccCcEEEEEE
Q 018606 152 STESRRKKAIEELVRV--VKKGSLVLITV 178 (353)
Q Consensus 152 ~~~e~~~~~l~el~rv--LkpgG~lli~~ 178 (353)
.. ..+..+.+. +.++|.+++..
T Consensus 90 ~~-----~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 90 ST-----PILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred HH-----HHHHHHHhcCCCcceEEEEEEH
Confidence 22 233333332 34677776653
No 131
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.81 E-value=2.1e-08 Score=89.25 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=88.6
Q ss_pred CCCCCE-EEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHH----c---CC-eEEEeeCCCCCCC--------CC
Q 018606 79 LPSGSL-VLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVD----R---GH-EVLVADAVNLPYR--------SD 137 (353)
Q Consensus 79 l~~~~~-VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~----~---~i-~~~~~D~~~l~~~--------~~ 137 (353)
+++... |||||||||..+ ...|.....-.|+.+..+...+. . ++ .-+..|+..-+.+ .+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 455554 999999999954 45888899999999887533332 2 22 3456777765322 45
Q ss_pred CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccchhhccccccccHHhHhhhhCCCCCcccC
Q 018606 138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRS 213 (353)
Q Consensus 138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 213 (353)
.||+|++++++|-++-.. ...+++...++|++||.|+++-+-... ..+.+....-+..|+....|....
T Consensus 102 ~~D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~------G~~ts~SN~~FD~sLr~rdp~~Gi 170 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRD------GKFTSESNAAFDASLRSRDPEWGI 170 (204)
T ss_pred CcceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccC------CEeCCcHHHHHHHHHhcCCCCcCc
Confidence 899999999998776544 789999999999999999999654432 223333344556666555554333
No 132
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=3.6e-08 Score=98.94 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=76.0
Q ss_pred CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEE
Q 018606 78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAI 143 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi 143 (353)
.+.++.+|||+|||+|..+. . .+...|+|+|+++.+++.++++ +++++++|+..++ ++ +.||+|+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEE
Confidence 45678899999999998642 2 3567999999999999998875 3678899988763 33 7899999
Q ss_pred ech------hhhhcC------ChhH-------HHHHHHHHHhccccCcEEEEEEcCC
Q 018606 144 SIA------VLHHLS------TESR-------RKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 144 ~~~------vl~h~~------~~e~-------~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+.. ++.+-+ .... ...+|..+.++|||||+++.++-..
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 743 222111 1111 2468999999999999999776554
No 133
>PRK00811 spermidine synthase; Provisional
Probab=98.77 E-value=2.1e-08 Score=94.65 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=73.3
Q ss_pred CCCCEEEEECCcccccccc---CC-CcEEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCC-CCCCCCccEE
Q 018606 80 PSGSLVLDAGCGNGKYLGL---NP-DCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA 142 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~~---~~-~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l-~~~~~~fD~V 142 (353)
+...+||+||||+|..+.. .+ ..+|+++|+++.+++.|++. +++++.+|+... ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3457999999999997642 33 35899999999999999874 357888888763 3346789999
Q ss_pred EechhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 018606 143 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 143 i~~~vl~h~~~~e-~~~~~l~el~rvLkpgG~lli~~ 178 (353)
++...-.+.+... -..++++.+.+.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9965433222111 02578899999999999988754
No 134
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.77 E-value=2e-08 Score=95.01 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=68.4
Q ss_pred CCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEEEechhh
Q 018606 78 SLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVL 148 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl 148 (353)
...+|.+|||||||+|.++- ...| .+|+|+|+++.+++.|+++ + ..+..... .......||+|+++-..
T Consensus 158 ~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~--~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 158 YVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS--EDLVEGKFDLVVANILA 235 (295)
T ss_dssp HSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT--SCTCCS-EEEEEEES-H
T ss_pred hccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe--cccccccCCEEEECCCH
Confidence 35678999999999999853 2334 4899999999999999987 2 23433222 22335899999987543
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.- ...++..+.++|+|||.++++-.-
T Consensus 236 ~v------L~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 236 DV------LLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp HH------HHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred HH------HHHHHHHHHHhhCCCCEEEEcccc
Confidence 21 467888899999999999999654
No 135
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=8.5e-08 Score=89.84 Aligned_cols=96 Identities=24% Similarity=0.273 Sum_probs=73.7
Q ss_pred CCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc----CC---eEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606 82 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----GH---EVLVADAVNLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~----~i---~~~~~D~~~l~~~~~~fD~Vi~~~vl~h 150 (353)
+.+|||+|||.|.+- ...|...++-+|++...++.|+++ ++ .++..|.. .+..+ +||+|||+--||-
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~-~~v~~-kfd~IisNPPfh~ 236 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLY-EPVEG-KFDLIISNPPFHA 236 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccc-ccccc-cccEEEeCCCccC
Confidence 459999999999863 357889999999999999999987 22 34444443 34444 9999999877774
Q ss_pred cCChh--HHHHHHHHHHhccccCcEEEEEEc
Q 018606 151 LSTES--RRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 151 ~~~~e--~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
=.... --.+++.+..+.|++||.|.|...
T Consensus 237 G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 237 GKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 33321 024899999999999999999976
No 136
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.75 E-value=3.2e-08 Score=100.68 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=70.7
Q ss_pred CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech---
Q 018606 82 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA--- 146 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~--- 146 (353)
+.+|||+|||+|.++. ..++..|+|+|+|+.+++.|+++ ++.++.+|+.. +++.+.||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 4689999999998753 35778999999999999999876 36778888754 23456899999932
Q ss_pred -----------hhhhcC---------ChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 147 -----------VLHHLS---------TESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 147 -----------vl~h~~---------~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
++.|-+ ..+....++..+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 111111 01124567888999999999998865
No 137
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=6.3e-09 Score=92.94 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=85.9
Q ss_pred CCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHc---C--CeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606 81 SGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR---G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~---~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~ 152 (353)
....++|||||-|...+. ..+ .+++-+|.|-.|++.|+.. + ....++|-+.++|.++++|+||++..+||+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N 151 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN 151 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence 446899999999998764 222 3899999999999999876 3 3567889999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
+ +...+.++...|||+|.|+-+.++.+.
T Consensus 152 d---LPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 152 D---LPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred c---CchHHHHHHHhcCCCccchhHHhcccc
Confidence 8 778999999999999999998887653
No 138
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.73 E-value=4.7e-08 Score=93.17 Aligned_cols=107 Identities=27% Similarity=0.328 Sum_probs=84.5
Q ss_pred HHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----C---CeEEEe-eCCCCCCCCCCccEE
Q 018606 73 ATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G---HEVLVA-DAVNLPYRSDFGDAA 142 (353)
Q Consensus 73 ~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~-D~~~l~~~~~~fD~V 142 (353)
.--|+.+.+|..|||-=||||.++-. .-|+.++|+|++..|++-|+.+ + ..+... |+..+|+++.++|+|
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaI 268 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAI 268 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceE
Confidence 33455778999999999999998743 6788999999999999999887 2 345555 999999999999999
Q ss_pred Eech------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 143 ISIA------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 143 i~~~------vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
++-- .+.-..-.+...++|..+.++|++||++++..+
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9822 122122134467899999999999999988876
No 139
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.71 E-value=3.5e-08 Score=88.35 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=72.1
Q ss_pred CEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc------C-CeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606 83 SLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR------G-HEVLVADAVNLPYRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~------~-i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~ 152 (353)
.+.||+|||-|+.+. +.+- -.|..+|+++.+++.|++. + .++++.-+.++....++||+|.+-+++.|++
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLT 136 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLT 136 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCC
Confidence 589999999999875 2333 4999999999999999964 1 3566666666655567999999999999999
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
+.+ ...+|+++...|+|+|.++|-.-
T Consensus 137 D~d-lv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 137 DED-LVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp HHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHH-HHHHHHHHHHhCcCCcEEEEEec
Confidence 866 89999999999999999998753
No 140
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.71 E-value=4.6e-08 Score=89.85 Aligned_cols=102 Identities=19% Similarity=0.136 Sum_probs=77.3
Q ss_pred HHHHHHhCCCCCCEEEEECCcccccc----c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C---
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P--- 133 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~----~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~--- 133 (353)
.+..++....++.+|||||||+|.-+ . ..++.+++++|+++.+++.|+++ .++++.+|+.+. +
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~ 137 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLL 137 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH
Confidence 44555566667889999999999732 2 24467999999999999999886 468899998763 1
Q ss_pred --CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 134 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 134 --~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.+.+.||+|+..+.- .....++..+.+.|+|||.+++..
T Consensus 138 ~~~~~~~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 124689999886421 225678999999999999988764
No 141
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=9.2e-08 Score=87.27 Aligned_cols=102 Identities=23% Similarity=0.281 Sum_probs=87.4
Q ss_pred hCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi 143 (353)
..+.||++|||.|.|+|.++. ..+.++|+..|+-+..++.|+++ .+++..+|+.+.-+.+ .||+|+
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~ 168 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVF 168 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEE
Confidence 468899999999999999753 25778999999999999999987 3788889998876654 899998
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccchh
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 187 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~~ 187 (353)
.- +++ +.++|..+..+|+|||.++++.++.+|-...
T Consensus 169 LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt 204 (256)
T COG2519 169 LD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKT 204 (256)
T ss_pred Ec-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHH
Confidence 85 566 7899999999999999999999999886544
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.68 E-value=4.3e-08 Score=87.57 Aligned_cols=95 Identities=26% Similarity=0.393 Sum_probs=70.9
Q ss_pred EEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CC--CCCCCccEEEechhhh
Q 018606 84 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LP--YRSDFGDAAISIAVLH 149 (353)
Q Consensus 84 ~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-l~--~~~~~fD~Vi~~~vl~ 149 (353)
.+||||||.|.++. ..|+..++|+|++...+..+.++ |+.++++|+.. +. ++++++|.|....---
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 89999999999863 48999999999999988877665 78999999987 32 5578999998876444
Q ss_pred hcCChh--H---HHHHHHHHHhccccCcEEEEEE
Q 018606 150 HLSTES--R---RKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 150 h~~~~e--~---~~~~l~el~rvLkpgG~lli~~ 178 (353)
|..... + -..+|..+.++|+|||.+.+.+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 333211 0 2579999999999999998876
No 143
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.61 E-value=1.3e-07 Score=87.24 Aligned_cols=105 Identities=21% Similarity=0.196 Sum_probs=80.9
Q ss_pred HHhCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCC---CCC
Q 018606 75 FLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR---SDF 138 (353)
Q Consensus 75 ~l~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~---~~~ 138 (353)
+...+.||++|||.|.|+|.++. ..+.++|+..|+.+...+.|++. ++++...|+....+. +..
T Consensus 34 ~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 34 MRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp HHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred HHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence 33478999999999999999753 36888999999999999999986 578999999764442 367
Q ss_pred ccEEEechhhhhcCChhHHHHHHHHHHhcc-ccCcEEEEEEcCCCccchh
Q 018606 139 GDAAISIAVLHHLSTESRRKKAIEELVRVV-KKGSLVLITVWAVEQEDKS 187 (353)
Q Consensus 139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvL-kpgG~lli~~~~~~~~~~~ 187 (353)
+|+|+.- +++ +..+|..+.++| |+||+++++.++.+|....
T Consensus 114 ~DavfLD-----lp~---Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~ 155 (247)
T PF08704_consen 114 FDAVFLD-----LPD---PWEAIPHAKRALKKPGGRICCFSPCIEQVQKT 155 (247)
T ss_dssp EEEEEEE-----SSS---GGGGHHHHHHHE-EEEEEEEEEESSHHHHHHH
T ss_pred ccEEEEe-----CCC---HHHHHHHHHHHHhcCCceEEEECCCHHHHHHH
Confidence 9999885 566 678999999999 9999999999999986543
No 144
>PRK01581 speE spermidine synthase; Validated
Probab=98.60 E-value=1.7e-07 Score=90.47 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=72.2
Q ss_pred CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCC-CCCCCCCcc
Q 018606 80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVN-LPYRSDFGD 140 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~-l~~~~~~fD 140 (353)
+...+||+||||+|..+. ..+..+|+++|+++.|++.|++. +++++.+|+.. +....+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 445699999999998654 23346999999999999999961 56788888876 334457899
Q ss_pred EEEechhhh--hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 141 AAISIAVLH--HLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 141 ~Vi~~~vl~--h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+|++...-. .......-.++++.+.+.|+|||++++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999974211 10111112578999999999999987764
No 145
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.57 E-value=7.5e-08 Score=91.42 Aligned_cols=110 Identities=17% Similarity=0.120 Sum_probs=79.4
Q ss_pred cccChHHHHHHHhCCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC
Q 018606 65 RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP 133 (353)
Q Consensus 65 ~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~ 133 (353)
|...++.+...-..+-.+.+|||||||+|.+.. +..| ..|+|+|.|.-+ +.|++. -++++.+.++.+.
T Consensus 44 Rt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~ 122 (346)
T KOG1499|consen 44 RTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE 122 (346)
T ss_pred hHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe
Confidence 334444443333456788999999999999743 3334 599999987654 666654 2688889888877
Q ss_pred CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606 134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 134 ~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll 175 (353)
+|..+.|+|++-+.=+++.-+..+..+|-.=-+.|+|||.++
T Consensus 123 LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 123 LPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 777899999997766655544446667777778999999876
No 146
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.57 E-value=1.4e-07 Score=99.76 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=75.3
Q ss_pred HHHHhCCCCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC-CCCCCc
Q 018606 73 ATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNLP-YRSDFG 139 (353)
Q Consensus 73 ~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~-~~~~~f 139 (353)
..++..+.++.+|||+|||+|.+... ..+. .|+++|+|+.+++.|+++ +++++++|+.+.. -..+.|
T Consensus 530 R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~f 609 (702)
T PRK11783 530 RRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQF 609 (702)
T ss_pred HHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCc
Confidence 34455555688999999999998532 3344 799999999999999986 2578899986531 114689
Q ss_pred cEEEech-hhh------h-cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 140 DAAISIA-VLH------H-LSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 140 D~Vi~~~-vl~------h-~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
|+||+.- .+. . .........++..+.++|+|||.++++.
T Consensus 610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999842 110 0 0011125678888999999999998875
No 147
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.56 E-value=1.7e-07 Score=92.49 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=74.3
Q ss_pred HHHhCCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCC--C--CCC
Q 018606 74 TFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP--Y--RSD 137 (353)
Q Consensus 74 ~~l~~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~l~--~--~~~ 137 (353)
..+..+.++.+|||+|||+|.+.. ...+ .+|+++|+|+.+++.|+++ + ++++++|+.... + ..+
T Consensus 213 ~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 213 LATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCC
Confidence 334445678899999999999742 2333 4999999999999999876 2 468889987642 1 246
Q ss_pred CccEEEechhhhhcCCh-------hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 138 FGDAAISIAVLHHLSTE-------SRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 138 ~fD~Vi~~~vl~h~~~~-------e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+||+|++.---. ..+. .....++....++|+|||.++++.-+
T Consensus 293 ~fDlVilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 293 KFDVIVMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCEEEECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 899999863210 0110 11445666788999999999987644
No 148
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.56 E-value=2.6e-08 Score=98.54 Aligned_cols=98 Identities=18% Similarity=0.272 Sum_probs=75.6
Q ss_pred CEEEEECCcccccccc--CCCcEEEEE---eCCHHHHHHHHHcCCeEEEeeC--CCCCCCCCCccEEEechhhhhcCChh
Q 018606 83 SLVLDAGCGNGKYLGL--NPDCFFVGC---DISPSLIKICVDRGHEVLVADA--VNLPYRSDFGDAAISIAVLHHLSTES 155 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~~--~~~~~v~gv---D~S~~~l~~a~~~~i~~~~~D~--~~l~~~~~~fD~Vi~~~vl~h~~~~e 155 (353)
.++||||||.|.|... ..++.+..+ |..+..++.|.++|+..+.+-+ ..|||++++||+|.|..++......+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence 4889999999999764 344433332 5566788999999987776653 57999999999999998775544332
Q ss_pred HHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 156 RRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 156 ~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
..+|-++-|+|||||+++++.....
T Consensus 199 --g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 199 --GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --cceeehhhhhhccCceEEecCCccc
Confidence 4589999999999999999876544
No 149
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.56 E-value=1.1e-06 Score=84.08 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=76.9
Q ss_pred HHHhCCCCCCEEEEECCcccccc----c----cCCCcEEEEEeCCHHHHHHHHHc-------CCeE--EEeeCCC----C
Q 018606 74 TFLNSLPSGSLVLDAGCGNGKYL----G----LNPDCFFVGCDISPSLIKICVDR-------GHEV--LVADAVN----L 132 (353)
Q Consensus 74 ~~l~~l~~~~~VLDvGCG~G~~~----~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~--~~~D~~~----l 132 (353)
.+...++++..|+|+|||+|.=+ . ......++++|+|..+|+.+.++ .+.+ +.+|+.+ +
T Consensus 69 ~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 69 DIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred HHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhc
Confidence 34446778889999999999842 1 23457899999999999888765 2444 6777755 2
Q ss_pred CC--CCCCccEEEech-hhhhcCChhHHHHHHHHHHh-ccccCcEEEEEE
Q 018606 133 PY--RSDFGDAAISIA-VLHHLSTESRRKKAIEELVR-VVKKGSLVLITV 178 (353)
Q Consensus 133 ~~--~~~~fD~Vi~~~-vl~h~~~~e~~~~~l~el~r-vLkpgG~lli~~ 178 (353)
+- ......+++..+ +|..+...+ ...+|+++++ .|+|||.|+|.+
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~e-a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPE-AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccccccCCccEEEEeCccccCCCHHH-HHHHHHHHHHhhCCCCCEEEEec
Confidence 21 123356666665 888888766 6889999999 999999999976
No 150
>PLN02366 spermidine synthase
Probab=98.54 E-value=2.7e-07 Score=87.98 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=73.0
Q ss_pred CCCCEEEEECCccccccc---cCCC-cEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-C-CCCCCccEE
Q 018606 80 PSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-P-YRSDFGDAA 142 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~---~~~~-~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~-~~~~~fD~V 142 (353)
+...+||+||||.|..+. ..+. .+|+.+|+++.+++.|++. +++++.+|+... . .+.+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 456799999999999764 2344 5899999999999999884 478888997542 1 235689999
Q ss_pred EechhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 018606 143 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 143 i~~~vl~h~~~~e-~~~~~l~el~rvLkpgG~lli~~ 178 (353)
++...-.+.+... --.++++.+.+.|+|||++++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9965443322110 02468999999999999987643
No 151
>PRK03612 spermidine synthase; Provisional
Probab=98.54 E-value=2e-07 Score=95.31 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=73.6
Q ss_pred CCCCEEEEECCccccccc---cCCC-cEEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCC-CCCCCCcc
Q 018606 80 PSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNL-PYRSDFGD 140 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~---~~~~-~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~l-~~~~~~fD 140 (353)
+++.+|||||||+|..+. ..+. .+++++|+++.+++.|+++ +++++.+|+... ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 456799999999999764 2444 6999999999999999982 467888888763 23357899
Q ss_pred EEEechhhhhcCChhH--HHHHHHHHHhccccCcEEEEEE
Q 018606 141 AAISIAVLHHLSTESR--RKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 141 ~Vi~~~vl~h~~~~e~--~~~~l~el~rvLkpgG~lli~~ 178 (353)
+|++.......+...+ -.++++.+.+.|+|||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999754322111100 2468899999999999998875
No 152
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.52 E-value=2.8e-07 Score=86.44 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=69.5
Q ss_pred CCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCCccEEEe
Q 018606 81 SGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAIS 144 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~~~~~~fD~Vi~ 144 (353)
.+.+||+||||+|..+.. .+..+++++|+++.+++.|++. +++++.+|.... .-..+.||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 345999999999986532 2346899999999999999874 355666666442 222568999998
Q ss_pred chhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 018606 145 IAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 145 ~~vl~h~~~~e-~~~~~l~el~rvLkpgG~lli~~ 178 (353)
......-+... -..++++.+.+.|+|||++++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 65422211110 02578899999999999998873
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=3.7e-07 Score=82.43 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=69.3
Q ss_pred CCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----CCeE------------------------
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----GHEV------------------------ 124 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----~i~~------------------------ 124 (353)
....+..+|||||-+|.++.. .....|+|+|+.+.++..|++. ....
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 344567999999999998642 3334799999999999999985 0000
Q ss_pred --------------------EEeeCCCCCCCCCCccEEEechhh--hhcC-ChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 125 --------------------LVADAVNLPYRSDFGDAAISIAVL--HHLS-TESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 125 --------------------~~~D~~~l~~~~~~fD~Vi~~~vl--~h~~-~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
...|+. .+....||+|+|..+- -|+. ..+-+..+++.+.++|.|||+|++.-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 001111 2334689999996643 2333 23447899999999999999998873
No 154
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.48 E-value=3.7e-07 Score=87.58 Aligned_cols=94 Identities=14% Similarity=0.160 Sum_probs=65.8
Q ss_pred CCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCCccEEEechhhhh
Q 018606 81 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH 150 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~-~~~~fD~Vi~~~vl~h 150 (353)
++.+|||+|||+|.++. ..++..|+|+|+++.+++.|+++ +++|+++|+..+.. ..+.||+|++.--
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP--- 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP--- 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---
Confidence 46899999999999754 24567999999999999999876 47899999977542 2457999998622
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.......+.++...++|++.++++...
T Consensus 250 ---r~G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 250 ---RRGIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred ---CCCccHHHHHHHHHcCCCeEEEEECCc
Confidence 110112233333446788777777543
No 155
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.48 E-value=5.2e-07 Score=84.12 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=78.4
Q ss_pred CCEEEEECCcccc--cc------cc-----CCCcEEEEEeCCHHHHHHHHHc----------------------------
Q 018606 82 GSLVLDAGCGNGK--YL------GL-----NPDCFFVGCDISPSLIKICVDR---------------------------- 120 (353)
Q Consensus 82 ~~~VLDvGCG~G~--~~------~~-----~~~~~v~gvD~S~~~l~~a~~~---------------------------- 120 (353)
.-+|+-+||+||. |. .. ...+.|+|+|++..+|+.|+.-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4699999999998 21 11 2357999999999999999852
Q ss_pred --------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 121 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 121 --------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.+.|...|+..-++..+.||+|+|-+|+.++..+. ..+++..++..|+|||.|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEEEEcc
Confidence 36777777777664567899999999999998665 6899999999999999998873
No 156
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.47 E-value=6.4e-07 Score=89.90 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=68.1
Q ss_pred CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC----CCCCCCCccEEEec
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN----LPYRSDFGDAAISI 145 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~----l~~~~~~fD~Vi~~ 145 (353)
+.++.+|||+|||+|.++.. .....|+|+|+|+.|++.|+++ +++++.+|+.. +++.+++||+|++.
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 45778999999999997532 3346999999999999999875 47899999864 23445689999884
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
---. . ....+..+.+ ++|++.++++.
T Consensus 375 PPr~-----g-~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 PPRA-----G-AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred cCCc-----C-hHHHHHHHHh-cCCCeEEEEEe
Confidence 2111 1 2344555555 68999988886
No 157
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.1e-07 Score=81.28 Aligned_cols=100 Identities=23% Similarity=0.242 Sum_probs=79.8
Q ss_pred HHHHHHh-CCCCCCEEEEECCccccccc------cCCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEE
Q 018606 71 KVATFLN-SLPSGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR-----------------GHEVLV 126 (353)
Q Consensus 71 ~~~~~l~-~l~~~~~VLDvGCG~G~~~~------~~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~ 126 (353)
.+++.|. .+.||.+.||||.|+|.+.. ..++...+|||.-+++++.++++ .+.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 4445554 68899999999999999753 24566669999999999999876 357889
Q ss_pred eeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 127 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 127 ~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
+|.....-+...||.|.+.+.- .+..+++...|++||+++|-.-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAA---------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CCccccCCccCCcceEEEccCc---------cccHHHHHHhhccCCeEEEeec
Confidence 9999887778899999998542 3456778888999999998864
No 158
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.44 E-value=2.3e-07 Score=90.13 Aligned_cols=106 Identities=25% Similarity=0.303 Sum_probs=90.3
Q ss_pred HHHhCCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEE
Q 018606 74 TFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA 142 (353)
Q Consensus 74 ~~l~~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~V 142 (353)
.+.....++..++|+|||-|.... ......++|+|.++..+..+... ...++.+|+.+.|++++.||.+
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcE
Confidence 344467788899999999998754 36778999999999877766554 3456888999999999999999
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
-++.+..|.++ ...+++|+.|+++|||+++...|...
T Consensus 183 ~~ld~~~~~~~---~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 183 RFLEVVCHAPD---LEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred EEEeecccCCc---HHHHHHHHhcccCCCceEEeHHHHHh
Confidence 99999999999 78999999999999999999988754
No 159
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.43 E-value=1.7e-06 Score=70.56 Aligned_cols=95 Identities=38% Similarity=0.662 Sum_probs=72.9
Q ss_pred EEEECCcccc--ccc-cCCC-cEEEEEeCCHHHHHHHHHcC-------CeEEEeeCCC--CCCCC-CCccEEEechhhhh
Q 018606 85 VLDAGCGNGK--YLG-LNPD-CFFVGCDISPSLIKICVDRG-------HEVLVADAVN--LPYRS-DFGDAAISIAVLHH 150 (353)
Q Consensus 85 VLDvGCG~G~--~~~-~~~~-~~v~gvD~S~~~l~~a~~~~-------i~~~~~D~~~--l~~~~-~~fD~Vi~~~vl~h 150 (353)
++|+|||+|. ++. .... ..++|+|+++.++..++... +.+..+|... +++.. ..||++.+...+++
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 131 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHL 131 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhc
Confidence 9999999998 333 2332 58999999999998866553 5788888876 77776 48999944444444
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
.. ....+.++.++|+|+|.+++.......
T Consensus 132 ~~----~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 132 LP----PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred CC----HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 44 578999999999999999999877544
No 160
>PRK04148 hypothetical protein; Provisional
Probab=98.43 E-value=2.4e-06 Score=71.32 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=72.5
Q ss_pred CCCEEEEECCcccc-ccc--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCCccEEEechhhhhcCChhH
Q 018606 81 SGSLVLDAGCGNGK-YLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESR 156 (353)
Q Consensus 81 ~~~~VLDvGCG~G~-~~~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~h~~~~e~ 156 (353)
.+.++||||||.|. ++. ...|..|+|+|+++..++.|++.+++++.+|+.+-.+. -..+|+|.++. +++|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir-----pp~e- 89 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR-----PPRD- 89 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC-----CCHH-
Confidence 35789999999996 432 25688999999999999999999999999999986532 35679999864 2333
Q ss_pred HHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 157 RKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 157 ~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
....+.++.+. -|.-++|.....+..
T Consensus 90 l~~~~~~la~~--~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 90 LQPFILELAKK--INVPLIIKPLSGEEP 115 (134)
T ss_pred HHHHHHHHHHH--cCCCEEEEcCCCCCC
Confidence 55566666654 456688888877763
No 161
>PLN02476 O-methyltransferase
Probab=98.41 E-value=1.5e-06 Score=81.46 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=78.3
Q ss_pred HHHHHHhCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y- 134 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~- 134 (353)
.+..++..+.+..+|||||+|+|..+. ..++..++++|.++.+++.|++. .++++.+|+... + +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 445555666678899999999998532 23467899999999999999876 478888988652 2 1
Q ss_pred ---CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 135 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 135 ---~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
..+.||+|+.-+- ......++..+.++|+|||.+++..
T Consensus 188 ~~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred hcccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 2368999998753 2236788999999999999988874
No 162
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.2e-06 Score=82.69 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=66.8
Q ss_pred EEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----C---CeEEEeeCCCCCCCCCCccEEEech-----h
Q 018606 84 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYRSDFGDAAISIA-----V 147 (353)
Q Consensus 84 ~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~D~~~l~~~~~~fD~Vi~~~-----v 147 (353)
+|||+|||+|..+. ..+...|+|+|+|+..++.|+++ + +.++.+|... +. .+.||+|+++- -
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PL-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-cc-CCceeEEEeCCCCCCCc
Confidence 79999999999753 36678999999999999999887 4 2344554433 23 34899999942 1
Q ss_pred hhhcCC-----------------hhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 148 LHHLST-----------------ESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 148 l~h~~~-----------------~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
..+..+ .+-...++.++.+.|+|||.+++..-
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 111111 11256788899999999999888764
No 163
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.38 E-value=2e-06 Score=76.97 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=68.3
Q ss_pred CCCCEEEEECCccccccc--c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-CCCCCCccEEEechhh
Q 018606 80 PSGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-PYRSDFGDAAISIAVL 148 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~--~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-~~~~~~fD~Vi~~~vl 148 (353)
.++.+|||+|||+|.+.. + ....+|+++|.++.+++.++++ ++.++.+|+... +.....||+|++.--.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 456799999999999753 2 2235999999999999988875 467888888653 2224579999986542
Q ss_pred hhcCChhHHHHHHHHHHh--ccccCcEEEEEEcC
Q 018606 149 HHLSTESRRKKAIEELVR--VVKKGSLVLITVWA 180 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~r--vLkpgG~lli~~~~ 180 (353)
.. . ....++..+.. +|+|+|++++....
T Consensus 132 ~~--g--~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RK--G--LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC--C--hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 11 1 12344555544 47899998888654
No 164
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=79.38 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=79.5
Q ss_pred HHHHHHhCCCCCCEEEEECCcccccc----ccCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEE-eeCCCCC--C
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLV-ADAVNLP--Y 134 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~----~~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~-~D~~~l~--~ 134 (353)
.+..++..+....+|||||.+.|.-+ ...+ ..+++.+|+++++.+.|++. .+.++. +|....- .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 45556666777889999999999843 2334 67999999999999999987 255666 4665422 3
Q ss_pred CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 135 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 135 ~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
..++||+|+.-+. ......++..+.++|+|||.+++.....
T Consensus 129 ~~~~fDliFIDad------K~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 129 LDGSFDLVFIDAD------KADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred cCCCccEEEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 4689999998653 2225689999999999999999886443
No 165
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.35 E-value=4.9e-07 Score=81.25 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=86.3
Q ss_pred ccChHHHHHHHhC--CCCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCC
Q 018606 66 FAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVN 131 (353)
Q Consensus 66 ~~~~~~~~~~l~~--l~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~ 131 (353)
..+|.....-... .+.|.+|||.+.|-|..+. ...|+ .|+.++-++..|+.|+-+ +++++.+|+.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 3456554444443 3468999999999999764 36676 999999999999998765 57899999887
Q ss_pred C--CCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 132 L--PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 132 l--~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
+ .|++.+||+||-.--=..+...---.++..|++|+|||||+++-++-+..+
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ 250 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK 250 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc
Confidence 4 388999999986221000111111367899999999999999999876544
No 166
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.5e-06 Score=75.97 Aligned_cols=66 Identities=26% Similarity=0.268 Sum_probs=53.4
Q ss_pred CCCCCCEEEEECCccccccc--c-CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~--~-~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
..-.|.+|+|+|||||.+.. . .....|+|+|+.+.+++.++++ +++|+.+|+..+. ..+|.++++-
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECC
Confidence 34467899999999999853 2 3446999999999999999987 5899999998874 5678888854
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.33 E-value=8.1e-07 Score=81.01 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=74.4
Q ss_pred CEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCCccEEEechhh
Q 018606 83 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIAVL 148 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~---~~~~~fD~Vi~~~vl 148 (353)
..+||||||.|.++. ..|...++|||+....+..|.++ |+.+++.|+..+- +++++.|-|....--
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 589999999999753 48999999999999887777654 5677888887632 445599999987655
Q ss_pred hhcCChh--H---HHHHHHHHHhccccCcEEEEEE
Q 018606 149 HHLSTES--R---RKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 149 ~h~~~~e--~---~~~~l~el~rvLkpgG~lli~~ 178 (353)
-|..... | ...+++.+.++|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 4443321 1 2478999999999999998886
No 168
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.32 E-value=1.3e-06 Score=78.57 Aligned_cols=101 Identities=19% Similarity=0.199 Sum_probs=75.2
Q ss_pred HHHHHhCCCCCCEEEEECCcccccc----cc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C----
Q 018606 72 VATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P---- 133 (353)
Q Consensus 72 ~~~~l~~l~~~~~VLDvGCG~G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~---- 133 (353)
+..++.......+||||||++|.-+ .. .++++|+.+|+++...+.|++. .++++.+|+... +
T Consensus 36 lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~ 115 (205)
T PF01596_consen 36 LLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN 115 (205)
T ss_dssp HHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence 3444444455679999999999853 22 4578999999999999999875 578999998752 2
Q ss_pred -CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 134 -YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 134 -~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
...+.||+|+.-+. .......+..+.++|+|||.+++..
T Consensus 116 ~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 116 DGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp TTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred ccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEcc
Confidence 12358999999763 2236778889999999999998875
No 169
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.32 E-value=1.8e-06 Score=77.32 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=75.4
Q ss_pred CEEEEECCccccc-cccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC---CCCccEEEechhhhhcCChhHHH
Q 018606 83 SLVLDAGCGNGKY-LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRK 158 (353)
Q Consensus 83 ~~VLDvGCG~G~~-~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~---~~~fD~Vi~~~vl~h~~~~e~~~ 158 (353)
-++|||||=+... .....-..|+.||+.+. .-.+.+.|+.+.|++ ++.||+|.++.||.+++++..|-
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG 124 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRG 124 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHH
Confidence 5999999975543 33455568999999873 456889999998864 67999999999999999999999
Q ss_pred HHHHHHHhccccCcE-----EEEEEcC
Q 018606 159 KAIEELVRVVKKGSL-----VLITVWA 180 (353)
Q Consensus 159 ~~l~el~rvLkpgG~-----lli~~~~ 180 (353)
+++..+.+.|+|+|. |+|..+.
T Consensus 125 ~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 125 EMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred HHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 999999999999999 8887654
No 170
>PLN02672 methionine S-methyltransferase
Probab=98.29 E-value=2.6e-06 Score=92.59 Aligned_cols=99 Identities=20% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------------------CCeEEEeeCCCCCC
Q 018606 82 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------------------GHEVLVADAVNLPY 134 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------------------~i~~~~~D~~~l~~ 134 (353)
+.+|||+|||+|.... ..+...|+|+|+|+.+++.|+++ +++|+++|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999743 35667999999999999999654 26888999876431
Q ss_pred C-CCCccEEEechh------hhhcCC-----------------------------hhHHHHHHHHHHhccccCcEEEEEE
Q 018606 135 R-SDFGDAAISIAV------LHHLST-----------------------------ESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 135 ~-~~~fD~Vi~~~v------l~h~~~-----------------------------~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
. ...||+||++-- +..+.. -+-..+++.+..++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 136999999321 011100 0113577888889999999998886
Q ss_pred cC
Q 018606 179 WA 180 (353)
Q Consensus 179 ~~ 180 (353)
-.
T Consensus 279 G~ 280 (1082)
T PLN02672 279 GG 280 (1082)
T ss_pred Cc
Confidence 44
No 171
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.27 E-value=3.1e-06 Score=77.28 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=56.6
Q ss_pred CCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHcCCe---EEEeeCCCCCC-----CCCCccEEEechhh
Q 018606 80 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHE---VLVADAVNLPY-----RSDFGDAAISIAVL 148 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~~i~---~~~~D~~~l~~-----~~~~fD~Vi~~~vl 148 (353)
.++.++||+|||||.++.. ..+ ..|+|+|+++.|+....+.+.+ +...|+..+.. .-..+|+++++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~-- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL-- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh--
Confidence 4678999999999998642 333 5899999999888763333222 33334443321 113566665543
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
...+..+.++|+| |.+++.+
T Consensus 152 ---------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 152 ---------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------HhHHHHHHHHhCc-CeEEEEc
Confidence 3357788999999 7766554
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.26 E-value=2.1e-06 Score=80.60 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
.+.++.+|||||||+|.++.. ..+.+|+|+|+++.|++.++++ +++++++|+..+++++-.++.|+++-
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 346778999999999998642 2234899999999999999875 68899999999886542257777753
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.25 E-value=2.6e-06 Score=79.36 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=56.3
Q ss_pred CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVL 148 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl 148 (353)
.+.++.+|||||||+|.++.. ..+..++|+|+++.|++.++++ +++++.+|+..++++ .||.|+++--.
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCc
Confidence 356788999999999998642 3356999999999999999875 588999999998765 47999887553
No 174
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.25 E-value=7e-06 Score=76.07 Aligned_cols=102 Identities=18% Similarity=0.107 Sum_probs=71.6
Q ss_pred CCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc-----------------------------------C
Q 018606 80 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-----------------------------------G 121 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~-----------------------------------~ 121 (353)
..|.++||||||+-.+-. +.+.+ .|+..|.++.-++..++. .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 356799999999977633 23333 799999988877654431 1
Q ss_pred C-eEEEeeCCCCC-CCC-----CCccEEEechhhhhcC-ChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 122 H-EVLVADAVNLP-YRS-----DFGDAAISIAVLHHLS-TESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 122 i-~~~~~D~~~l~-~~~-----~~fD~Vi~~~vl~h~~-~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+ .++.+|+.+.+ +.. ..||+|+++.+++... +.+....+++.+.++|||||.|++.....
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 2 47889998754 332 2599999999998876 55668899999999999999999987643
No 175
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.24 E-value=2.8e-06 Score=74.83 Aligned_cols=103 Identities=27% Similarity=0.392 Sum_probs=68.7
Q ss_pred HHhCCCCCCEEEEECCccccccc----cCCCc---------EEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC
Q 018606 75 FLNSLPSGSLVLDAGCGNGKYLG----LNPDC---------FFVGCDISPSLIKICVDR--------GHEVLVADAVNLP 133 (353)
Q Consensus 75 ~l~~l~~~~~VLDvGCG~G~~~~----~~~~~---------~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~ 133 (353)
.+....++..|||.-||+|.++. ..... .++|+|+++.+++.|+++ .+.+.+.|+..++
T Consensus 22 ~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 22 NLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp HHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred HHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 34466788999999999999852 12222 399999999999999887 3578899999999
Q ss_pred CCCCCccEEEechhhhh-cCC----hhHHHHHHHHHHhccccCcEEEEEE
Q 018606 134 YRSDFGDAAISIAVLHH-LST----ESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 134 ~~~~~fD~Vi~~~vl~h-~~~----~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+.++++|+|++.--..- +.. .+....+++++.++|++ ..++++.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 87889999999542221 111 12245778999999999 4444443
No 176
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.24 E-value=1.2e-05 Score=74.87 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=78.8
Q ss_pred CCCEEEEECCccccccc----cCCC--cEEEEEeCCHHHHHHHHHc-------CC-eEEEeeCCCCC-C--CCCCccEEE
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPD--CFFVGCDISPSLIKICVDR-------GH-EVLVADAVNLP-Y--RSDFGDAAI 143 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~--~~v~gvD~S~~~l~~a~~~-------~i-~~~~~D~~~l~-~--~~~~fD~Vi 143 (353)
..-+||||+||.|+|+- ..+. ..|.-.|.|+..++..++. ++ +|.++|+.+.. + -.-..+++|
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 44699999999999852 2333 5999999999999887764 34 89999988632 1 133469999
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.++.++.+++.+.....|.-+.+++.|||.++.+.
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 99999999998877889999999999999987664
No 177
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.21 E-value=8.2e-06 Score=69.92 Aligned_cols=101 Identities=22% Similarity=0.253 Sum_probs=84.8
Q ss_pred CCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCC-----CCCCCccEEEech
Q 018606 79 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLP-----YRSDFGDAAISIA 146 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~-----~~~~~fD~Vi~~~ 146 (353)
...|..|||+|.|||.++.. .+...+++++.|+.......++ +++++.+|+..+. ..+..||.|||.-
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 34567999999999998753 4556999999999999998887 7889999998765 5567899999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
-+-.++... +.++|+.+...|.+||.++-..+.
T Consensus 126 Pll~~P~~~-~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 126 PLLNFPMHR-RIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ccccCcHHH-HHHHHHHHHHhcCCCCeEEEEEec
Confidence 777777544 688999999999999999988877
No 178
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.21 E-value=3.5e-06 Score=84.28 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=66.7
Q ss_pred CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC----CCCCCCccEEEec
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISI 145 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l----~~~~~~fD~Vi~~ 145 (353)
+.++.+|||+|||+|.++.. .....|+|+|+++.|++.|+++ +++|+.+|+... ++.+++||+|++.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 45678999999999998542 2345899999999999999875 578999998652 2335679999874
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
--=..+ ...++..+.+ ++|++.++++.
T Consensus 370 PPr~G~-----~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 370 PPRKGC-----AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred cCCCCC-----CHHHHHHHHh-cCCCEEEEEcC
Confidence 321000 1355565554 78988777763
No 179
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.20 E-value=2.3e-06 Score=85.60 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCEEEEECCccccccc----c----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 82 GSLVLDAGCGNGKYLG----L----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~----~----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
+..|||||||+|.+.. + ....+|++++-++.++...+++ .|+++.+|++.+..+ ..+|+||+-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5689999999999742 1 2346999999999877655332 589999999998875 488999994
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~ll 175 (353)
.. ..+.+.|...++|....|.|||||+++
T Consensus 266 lL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 43 233344456678999999999999876
No 180
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.18 E-value=4.5e-06 Score=73.10 Aligned_cols=98 Identities=19% Similarity=0.109 Sum_probs=61.8
Q ss_pred CCCCCEEEEECCcccccc---cc-CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCC----CCCCCcc
Q 018606 79 LPSGSLVLDAGCGNGKYL---GL-NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLP----YRSDFGD 140 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~---~~-~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~----~~~~~fD 140 (353)
...+.+|||+|||+|... .. .....|+.+|..+ .++.++.+ .+.+...|-..-. +....||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 456789999999999642 22 3567999999998 77776654 2455555543311 3346899
Q ss_pred EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+|+...+++.-.. ...++.-+.++|+++|.+++....
T Consensus 122 ~IlasDv~Y~~~~---~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 122 VILASDVLYDEEL---FEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEEES--S-GGG---HHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEEecccchHHH---HHHHHHHHHHHhCCCCEEEEEeCE
Confidence 9999999986433 788999999999999997777643
No 181
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=1.5e-05 Score=73.43 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=70.6
Q ss_pred CCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-----CCCCCCCccEEE
Q 018606 81 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-----LPYRSDFGDAAI 143 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-----l~~~~~~fD~Vi 143 (353)
.+..|||+|||+|... ...+.+.++++|.|+.++..|.++ ++.++..+++. .+...+.+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 4568999999999864 236789999999999999999887 35555444332 335568899999
Q ss_pred echh-h-----hhcCC-----------------hhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 144 SIAV-L-----HHLST-----------------ESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 144 ~~~v-l-----~h~~~-----------------~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
++-- + ..+.. .+-...++.-..|.|+|||.+.+..-..
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 8431 1 00110 0113466777889999999999887543
No 182
>PLN02823 spermine synthase
Probab=98.12 E-value=8e-06 Score=78.83 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=70.0
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCCccEEEe
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAIS 144 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~~~~~~fD~Vi~ 144 (353)
...+||.||+|.|..+. ..+..+++.+|+++.+++.|++. +++++.+|+... ....+.||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 44689999999998754 23345899999999999999975 467888887763 334578999998
Q ss_pred chhh-------hhcCChhHHHHHHH-HHHhccccCcEEEEEE
Q 018606 145 IAVL-------HHLSTESRRKKAIE-ELVRVVKKGSLVLITV 178 (353)
Q Consensus 145 ~~vl-------~h~~~~e~~~~~l~-el~rvLkpgG~lli~~ 178 (353)
...- .++-+ .++++ .+.+.|+|||++++..
T Consensus 183 D~~dp~~~~~~~~Lyt----~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLADPVEGGPCYQLYT----KSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCCCccccCcchhhcc----HHHHHHHHHHhcCCCcEEEEec
Confidence 6321 12222 46777 8999999999987653
No 183
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.12 E-value=7.6e-06 Score=75.66 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=75.9
Q ss_pred HHHHHHhCCCCCCEEEEECCcccccc----c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y- 134 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~----~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~- 134 (353)
.+..++.......+|||||+++|.-+ . ..++++++.+|+++...+.|++. .++++.+|+.+. + +
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence 34444445555679999999999842 2 24578999999999999999876 578899988662 2 1
Q ss_pred ----CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 135 ----RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 135 ----~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
..++||+|+.-+- .......+..+.+.|+|||.+++..
T Consensus 149 ~~~~~~~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred hccccCCcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1368999998753 2225678888899999999988763
No 184
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=2.8e-06 Score=71.06 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=57.5
Q ss_pred CCCEEEEECCccccccc--cC-CCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606 81 SGSLVLDAGCGNGKYLG--LN-PDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVL 148 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~--~~-~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl 148 (353)
.|.+++|+|||.|.+.. .. ..-.|+|+|+.+..++++.++ +++++++|+..+.+..+.||.++..--+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 57899999999999862 23 345899999999999999987 6789999999988888999999986543
No 185
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.12 E-value=6.7e-06 Score=81.35 Aligned_cols=132 Identities=16% Similarity=0.193 Sum_probs=96.3
Q ss_pred HHHHHHHHhhccccccccccChHHHHHHHh-CCCCCC-EEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHcC-
Q 018606 48 KYVHRVYDAIAPHFSSTRFAKWPKVATFLN-SLPSGS-LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRG- 121 (353)
Q Consensus 48 ~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~-~l~~~~-~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~~- 121 (353)
.++..+|-... .-..++|..|..+...+- .+.+-. ++|-+|||+-.+... .....|+-+|.|+..++....++
T Consensus 14 ~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~ 92 (482)
T KOG2352|consen 14 VYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA 92 (482)
T ss_pred hhhhhhccccC-CChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc
Confidence 34444444333 112234455554444443 445556 999999999987642 33359999999999988877763
Q ss_pred -----CeEEEeeCCCCCCCCCCccEEEechhhhhcCChhH-------HHHHHHHHHhccccCcEEEEEEcC
Q 018606 122 -----HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR-------RKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 122 -----i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~-------~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
..+..+|+..+.|++++||+||..+.++++-..+. +...+.+++|+|++||+.+..+..
T Consensus 93 ~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 93 KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred cCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 57899999999999999999999999999765442 345789999999999998877763
No 186
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.11 E-value=3.7e-06 Score=85.65 Aligned_cols=98 Identities=13% Similarity=0.212 Sum_probs=73.8
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEEechh
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV 147 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi~~~v 147 (353)
.+..+||||||.|.++. ..|...++|+|++...+..+.++ |+.++..|+..+. ++++++|.|+..+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 45799999999999853 48999999999999876665444 5667777765332 67888999998765
Q ss_pred hhhcCCh--hH---HHHHHHHHHhccccCcEEEEEE
Q 018606 148 LHHLSTE--SR---RKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 148 l~h~~~~--e~---~~~~l~el~rvLkpgG~lli~~ 178 (353)
--|.... .+ -..++..+.++|+|||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4443321 11 2478999999999999998875
No 187
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.11 E-value=8.6e-06 Score=77.62 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=74.5
Q ss_pred CCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhH
Q 018606 82 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~ 156 (353)
-...+|+|.|.|..+.. ...-.|-++++....+-.++.. +++.+-+|+.+- .|.+ |+|++.++|||+.|.+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDed- 253 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDED- 253 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChHH-
Confidence 37999999999997652 2222467777777766555444 488888998875 4444 6999999999999876
Q ss_pred HHHHHHHHHhccccCcEEEEEEcC
Q 018606 157 RKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 157 ~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
..++|+++...|+|||.+++...-
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecc
Confidence 799999999999999999998763
No 188
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.10 E-value=6.1e-06 Score=81.02 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=65.6
Q ss_pred CCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCCccEEEechhhhh
Q 018606 81 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH 150 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~-~~~~fD~Vi~~~vl~h 150 (353)
++.+|||+|||+|.+.. ..++..|+|+|+++.+++.|+++ +++|+.+|+..... ....||+|++.---..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 46799999999998743 34557999999999999999876 46799999876421 1246999988532111
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+ ...++..+. .++|++.++++.
T Consensus 313 ~-----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 313 I-----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred C-----cHHHHHHHH-hcCCCeEEEEEe
Confidence 1 134445554 478999888886
No 189
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.09 E-value=6.1e-06 Score=76.65 Aligned_cols=92 Identities=21% Similarity=0.181 Sum_probs=62.7
Q ss_pred CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCcc---EEEechhh
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGD---AAISIAVL 148 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD---~Vi~~~vl 148 (353)
+.++.+|||||||+|.++.. ..+..++++|+++.|++.++++ +++++.+|+..++++ .+| +|+++--
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP- 103 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP- 103 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC-
Confidence 45678999999999998653 3335799999999999999875 578899999998865 455 5655433
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.|+. ..++.++.. .+++..++....
T Consensus 104 y~i~-----~~il~~ll~--~~~~~~~~~~~q 128 (253)
T TIGR00755 104 YNIS-----SPLIFKLLE--KPKFRLAVLMVQ 128 (253)
T ss_pred hhhH-----HHHHHHHhc--cCCCceEEEEeh
Confidence 2232 234444443 455554444443
No 190
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.07 E-value=8.4e-06 Score=79.88 Aligned_cols=110 Identities=16% Similarity=0.154 Sum_probs=81.0
Q ss_pred HHHHHhCCCCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC----CC
Q 018606 72 VATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNLP----YR 135 (353)
Q Consensus 72 ~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~----~~ 135 (353)
....+...-.|.+|||+-|=||.+.- +..|+ +|+++|+|...++.|+++ .+.++++|+...- -+
T Consensus 208 ~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~ 287 (393)
T COG1092 208 NRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR 287 (393)
T ss_pred HHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc
Confidence 34455555559999999999999854 35666 999999999999999997 2579999987632 23
Q ss_pred CCCccEEEech-hhhh-----cCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 136 SDFGDAAISIA-VLHH-----LSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 136 ~~~fD~Vi~~~-vl~h-----~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
...||+||.-- .+.- +.-......++..+.++|+|||.+++++-..
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 45999999821 1100 1111226788999999999999999987543
No 191
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.05 E-value=3.3e-05 Score=68.30 Aligned_cols=92 Identities=24% Similarity=0.201 Sum_probs=69.0
Q ss_pred CCCCC-EEEEECCcccc----ccccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606 79 LPSGS-LVLDAGCGNGK----YLGLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 79 l~~~~-~VLDvGCG~G~----~~~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
++... +++|||+|.|. ++...|..+++.+|....-+...+.- |++++.+.++. +.....||+|++-+
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh
Confidence 34444 89999999997 23458999999999998765544432 67899998888 55578999999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+ .+ ...++.-+...|++||.+++.-
T Consensus 124 v----~~---l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 124 V----AP---LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp S----SS---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred h----cC---HHHHHHHHHHhcCCCCEEEEEc
Confidence 5 33 5678888999999999988874
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.04 E-value=8.7e-06 Score=77.29 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=56.6
Q ss_pred CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 147 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v 147 (353)
.+.++.+|||||||+|.++.. ..+..|+|+|+++.|++.++++ +++++.+|+...+++ .||+|+++--
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlP 110 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVP 110 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCC
Confidence 456788999999999998652 3456899999999999999874 478999999887653 6898887543
Q ss_pred hhhcCC
Q 018606 148 LHHLST 153 (353)
Q Consensus 148 l~h~~~ 153 (353)
.++.+
T Consensus 111 -Y~Ist 115 (294)
T PTZ00338 111 -YQISS 115 (294)
T ss_pred -cccCc
Confidence 33444
No 193
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.02 E-value=1.9e-05 Score=73.69 Aligned_cols=126 Identities=15% Similarity=0.104 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhccccc----cccccChHHHHHHHhCCCC-------CCEEEEECCccccccc--cCCCcEEEEEeCCHH
Q 018606 46 EKKYVHRVYDAIAPHFS----STRFAKWPKVATFLNSLPS-------GSLVLDAGCGNGKYLG--LNPDCFFVGCDISPS 112 (353)
Q Consensus 46 e~~~v~~~yd~~a~~y~----~~~~~~~~~~~~~l~~l~~-------~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~ 112 (353)
+...|.....++...|+ ..|...+..+...|..+.| ..+||=-|||.|+++- ...|..+.|.|.|--
T Consensus 10 d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~ 89 (270)
T PF07942_consen 10 DMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYF 89 (270)
T ss_pred hHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHH
Confidence 34455555555555554 3555555556666654422 4699999999999863 355889999999999
Q ss_pred HHHHHHH-------c----------------------------------------CCeEEEeeCCCCCCCC---CCccEE
Q 018606 113 LIKICVD-------R----------------------------------------GHEVLVADAVNLPYRS---DFGDAA 142 (353)
Q Consensus 113 ~l~~a~~-------~----------------------------------------~i~~~~~D~~~l~~~~---~~fD~V 142 (353)
|+-...- . ++....+|+..+...+ +.||+|
T Consensus 90 Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~V 169 (270)
T PF07942_consen 90 MLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVV 169 (270)
T ss_pred HHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEE
Confidence 8643221 0 2345566766655444 799999
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccCcEE
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 174 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~l 174 (353)
+..+.|.-..+ ....|..|.++|||||..
T Consensus 170 vT~FFIDTA~N---i~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 170 VTCFFIDTAEN---IIEYIETIEHLLKPGGYW 198 (270)
T ss_pred EEEEEeechHH---HHHHHHHHHHHhccCCEE
Confidence 99976665444 889999999999999943
No 194
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=2.5e-05 Score=69.73 Aligned_cols=133 Identities=20% Similarity=0.146 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhccccccccccChHHHHHHHh---CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHH
Q 018606 47 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICV 118 (353)
Q Consensus 47 ~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~---~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~ 118 (353)
.++..+.|...|..- .-|-..+.++.++.. -+.++..|+|+|+-+|.+++. .++..|+|+|+.+--.
T Consensus 9 ~~~~~D~Y~~~Ak~~-gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---- 83 (205)
T COG0293 9 AEHLRDPYYKKAKKE-GYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---- 83 (205)
T ss_pred HHhhcCHHHHHHhhc-cccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----
Confidence 344455555544321 112233334444443 367899999999999998752 4556799999866321
Q ss_pred HcCCeEEEeeCCCCC--------CCCCCccEEEech--------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 119 DRGHEVLVADAVNLP--------YRSDFGDAAISIA--------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 119 ~~~i~~~~~D~~~l~--------~~~~~fD~Vi~~~--------vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
-.++.++++|++.-+ +....+|+|+|-. ..+|......-..++.-...+|+|||.+++-+|..+
T Consensus 84 ~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 84 IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 126999999998743 3345579999733 335555444345667777789999999999998876
Q ss_pred cc
Q 018606 183 QE 184 (353)
Q Consensus 183 ~~ 184 (353)
..
T Consensus 164 ~~ 165 (205)
T COG0293 164 DF 165 (205)
T ss_pred CH
Confidence 54
No 195
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.98 E-value=3e-05 Score=73.24 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=70.8
Q ss_pred CCCCEEEEECCcccccc--ccCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606 80 PSGSLVLDAGCGNGKYL--GLNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 148 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~--~~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl 148 (353)
-.+..|||||||+|.+. ....| .+|++++.| +|.++|++. +|.++.+-++++.++ +..|+||+--.=
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 45789999999999964 23444 499999976 688888875 578899999998875 567999985433
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
..+- .||..+..-..++.|+|.|.++=++
T Consensus 254 ~mL~-NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLV-NERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhh-hHHHHHHHHHHHhhcCCCCcccCcc
Confidence 3333 3445565566679999999877543
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.93 E-value=4.4e-05 Score=72.88 Aligned_cols=133 Identities=17% Similarity=0.248 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcccccc------ccccChHHHHHHHh---CCCCCCEEEEECCcccccccc-----------CCCcEEEEE
Q 018606 48 KYVHRVYDAIAPHFSS------TRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL-----------NPDCFFVGC 107 (353)
Q Consensus 48 ~~v~~~yd~~a~~y~~------~~~~~~~~~~~~l~---~l~~~~~VLDvGCG~G~~~~~-----------~~~~~v~gv 107 (353)
+.+.++|+.+-..+.. ..+.....+..++. ...++.+|+|.+||+|.++.. .....++|+
T Consensus 4 d~~g~~yE~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ 83 (311)
T PF02384_consen 4 DILGDLYEYFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGI 83 (311)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEee
Confidence 4455666655444411 12222333333332 456677999999999998632 266799999
Q ss_pred eCCHHHHHHHHHc---------CCeEEEeeCCCCCCC--CCCccEEEechhhhhc-------C-----------ChhHHH
Q 018606 108 DISPSLIKICVDR---------GHEVLVADAVNLPYR--SDFGDAAISIAVLHHL-------S-----------TESRRK 158 (353)
Q Consensus 108 D~S~~~l~~a~~~---------~i~~~~~D~~~l~~~--~~~fD~Vi~~~vl~h~-------~-----------~~e~~~ 158 (353)
|+++.++..|+-+ ...+..+|....+.. ...||+|++.--+.-. . ....-.
T Consensus 84 ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (311)
T PF02384_consen 84 EIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEY 163 (311)
T ss_dssp ES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHH
T ss_pred cCcHHHHHHHHhhhhhhccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhh
Confidence 9999999888754 235788887765533 4789999994422211 0 001123
Q ss_pred HHHHHHHhccccCcEEEEEEcC
Q 018606 159 KAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 159 ~~l~el~rvLkpgG~lli~~~~ 180 (353)
.++..+.+.|++||++.+.++.
T Consensus 164 ~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 164 AFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEH
T ss_pred hhHHHHHhhcccccceeEEecc
Confidence 5889999999999998888764
No 197
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.91 E-value=6.4e-05 Score=75.74 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=74.9
Q ss_pred CCCCCCEEEEECCcccccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCCccEEEe
Q 018606 78 SLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAIS 144 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~-~~~~~fD~Vi~ 144 (353)
...+|.+|||++||+|.=+ .. .....+++.|+++.-++.++++ ++.+...|...+. ...+.||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 4578999999999999832 22 3446999999999988887765 3456677777653 33467999994
Q ss_pred ----ch--hhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 145 ----IA--VLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 145 ----~~--vl~h~~~~-------------e~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
++ ++..-++. ....++|....+.|||||+|+-++-+....
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~e 248 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNRE 248 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHH
Confidence 32 33221110 113678999999999999998777665443
No 198
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.86 E-value=8e-06 Score=71.75 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=65.4
Q ss_pred hHHHHHHHhC---CCC--CCEEEEECCcccccccc--C---CCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------
Q 018606 69 WPKVATFLNS---LPS--GSLVLDAGCGNGKYLGL--N---PDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------ 132 (353)
Q Consensus 69 ~~~~~~~l~~---l~~--~~~VLDvGCG~G~~~~~--~---~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------ 132 (353)
|-++.+++.. +.+ +.++||+||++|.++.. . +...|+|+|+.+.- .-.++.++++|+...
T Consensus 6 ~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i 81 (181)
T PF01728_consen 6 AFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDI 81 (181)
T ss_dssp HHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHG
T ss_pred HHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhh
Confidence 3344454443 234 48999999999998652 2 35899999998751 002445555555431
Q ss_pred C--CC--CCCccEEEechhhhh--------cCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 133 P--YR--SDFGDAAISIAVLHH--------LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 133 ~--~~--~~~fD~Vi~~~vl~h--------~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
. +. ...||+|+|-.+... ..........+.-+...|+|||.+++-++....
T Consensus 82 ~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 82 RKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp GGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred hhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 1 11 268999999773221 111122345566666789999999999887544
No 199
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.82 E-value=0.0001 Score=65.51 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=64.1
Q ss_pred CCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-CC-CCccEEEe
Q 018606 80 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-RS-DFGDAAIS 144 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~-~~-~~fD~Vi~ 144 (353)
-.+.++||++||+|.+.. ...++ .|+++|.++.+++.++++ +++++.+|+... . + .. ..||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 357899999999998743 23443 899999999999988875 257888888542 2 1 12 24788877
Q ss_pred chhhhhcCChhHHHHHHHHH--HhccccCcEEEEEEcC
Q 018606 145 IAVLHHLSTESRRKKAIEEL--VRVVKKGSLVLITVWA 180 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el--~rvLkpgG~lli~~~~ 180 (353)
.--... .. ...++..+ ..+|+++|.+++....
T Consensus 128 DPPy~~-~~---~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN-GA---LQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC-Cc---HHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 433221 11 23344433 3468899988877544
No 200
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=3.7e-05 Score=67.09 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=72.1
Q ss_pred CCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-eCCCC--------CCCCCCccEEE
Q 018606 78 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNL--------PYRSDFGDAAI 143 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l--------~~~~~~fD~Vi 143 (353)
-+.|+.+|||+||.+|.+.+ ..|...|.|+|+-. +.--.|..++++ |+.+- .++....|+|+
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVl 141 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVL 141 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEE
Confidence 46789999999999999875 26889999999732 222236677766 66641 14567889999
Q ss_pred ech--------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 144 SIA--------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 144 ~~~--------vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
+-. ...|....+.-..++.-....++|+|.+++-+|..++.
T Consensus 142 SDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 142 SDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred eccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 832 34444443333445555667788999999999998764
No 201
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.77 E-value=0.00016 Score=65.17 Aligned_cols=98 Identities=20% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCH----HHHHHHHHc-CCeEEEeeCCCCC---CCCCCccEEEe
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----SLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAIS 144 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~----~~l~~a~~~-~i~~~~~D~~~l~---~~~~~fD~Vi~ 144 (353)
.+.+|++||-+|..+|..... .+.+.|+|+++|+ .++..|++| |+--+..|+..-. .--+.+|+|++
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 457899999999999997542 6688999999999 567888887 7888889988622 11348899988
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.- ..+++..-++..+...||+||.+++..-+
T Consensus 150 DV-----aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 150 DV-----AQPDQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp E------SSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cC-----CChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence 63 23344667888888999999999999743
No 202
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.74 E-value=5.9e-05 Score=72.30 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=48.6
Q ss_pred CCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc---C------CeEEE-eeCCCCC----CCCCCccEE
Q 018606 81 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR---G------HEVLV-ADAVNLP----YRSDFGDAA 142 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~---~------i~~~~-~D~~~l~----~~~~~fD~V 142 (353)
.+.++||||||+|... ...++..++|+|+++.+++.|++. + +.+.. .|...+. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999998542 235678999999999999999976 2 33432 2322221 235689999
Q ss_pred Eechhhh
Q 018606 143 ISIAVLH 149 (353)
Q Consensus 143 i~~~vl~ 149 (353)
+|+--++
T Consensus 194 vcNPPf~ 200 (321)
T PRK11727 194 LCNPPFH 200 (321)
T ss_pred EeCCCCc
Confidence 9976544
No 203
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.73 E-value=9.3e-05 Score=72.82 Aligned_cols=89 Identities=21% Similarity=0.142 Sum_probs=67.0
Q ss_pred CCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606 82 GSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h 150 (353)
+.+|||++||+|.+... .+...|+++|+++.+++.++++ ++.+..+|+..+....+.||+|++.--
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 46899999999997431 2334899999999999999876 245888888664221457999988531
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
.. ...++....+.+++||.++++
T Consensus 135 -Gs---~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GS---PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CC---cHHHHHHHHHHhcCCCEEEEE
Confidence 22 356788877888999999999
No 204
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.73 E-value=7e-05 Score=67.06 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=64.1
Q ss_pred HHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccE
Q 018606 74 TFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDA 141 (353)
Q Consensus 74 ~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~ 141 (353)
.+...+.++.+|||+.||-|.|+- ..+...|+++|+++..++.++++ .+..+.+|+..+.. ...||-
T Consensus 94 Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 94 RIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp HHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEE
T ss_pred HHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCE
Confidence 444457889999999999999853 24667999999999999988876 36789999988765 789999
Q ss_pred EEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606 142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll 175 (353)
|++.. +.. -..+|..+.+++++||.+-
T Consensus 173 vim~l-----p~~--~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMNL-----PES--SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE-------TSS--GGGGHHHHHHHEEEEEEEE
T ss_pred EEECC-----hHH--HHHHHHHHHHHhcCCcEEE
Confidence 98864 211 2357888999999998763
No 205
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.71 E-value=3.2e-05 Score=72.93 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=72.8
Q ss_pred HHHHHHhCCCCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC-C--CC
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P--YR 135 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l-~--~~ 135 (353)
....++.....|.+|||+=|=||.+.. ...|+ +|+.+|.|..+++.|+++ .++++.+|+... . -.
T Consensus 113 ~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~ 192 (286)
T PF10672_consen 113 ENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK 192 (286)
T ss_dssp HHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH
T ss_pred hhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc
Confidence 333444444568999999999999853 34554 899999999999999987 357888898752 1 12
Q ss_pred CCCccEEEech-hhh--hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 136 SDFGDAAISIA-VLH--HLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 136 ~~~fD~Vi~~~-vl~--h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.+.||+||+-- .+. ...-......++..+.++|+|||.|+++.-+
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 46899999821 110 0000122567899999999999998877654
No 206
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00014 Score=68.60 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=72.9
Q ss_pred hCCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC-CCCCCcc
Q 018606 77 NSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP-YRSDFGD 140 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~-~~~~~fD 140 (353)
.+-.+ .+||-||-|.|..++. .+--+++.+|+.+..++.|++. +++++..|..+.- -...+||
T Consensus 73 ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 73 AHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred hCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 34344 6999999999998763 4456999999999999999986 3467777776632 2234899
Q ss_pred EEEechhhhhcCChhH--HHHHHHHHHhccccCcEEEEE
Q 018606 141 AAISIAVLHHLSTESR--RKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 141 ~Vi~~~vl~h~~~~e~--~~~~l~el~rvLkpgG~lli~ 177 (353)
+||+-..-. ....+. -..+++.+.+.|+++|+++..
T Consensus 152 vIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999965433 111000 167999999999999999888
No 207
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.68 E-value=3e-05 Score=69.73 Aligned_cols=96 Identities=22% Similarity=0.326 Sum_probs=57.1
Q ss_pred CCCCCCEEEEECCccccccc---cCCCc-EEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCCCCCCC-
Q 018606 78 SLPSGSLVLDAGCGNGKYLG---LNPDC-FFVGCDISPSLIKICVDR----------------GHEVLVADAVNLPYRS- 136 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~l~~~~- 136 (353)
.+.+++..+|||||.|+... +..++ ..+||++.+...+.|+.. .+++..+|+.+.++..
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 46788999999999999642 33445 599999999988777642 2466777877643211
Q ss_pred --CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 137 --DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 137 --~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
...|+|++++... +++ ....|.++..-||+|-++ |+.
T Consensus 119 ~~s~AdvVf~Nn~~F---~~~-l~~~L~~~~~~lk~G~~I-Is~ 157 (205)
T PF08123_consen 119 IWSDADVVFVNNTCF---DPD-LNLALAELLLELKPGARI-IST 157 (205)
T ss_dssp HGHC-SEEEE--TTT----HH-HHHHHHHHHTTS-TT-EE-EES
T ss_pred hhcCCCEEEEecccc---CHH-HHHHHHHHHhcCCCCCEE-EEC
Confidence 2358999987642 233 567778888899988665 443
No 208
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.67 E-value=2.5e-05 Score=69.21 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=72.2
Q ss_pred CCEEEEECCcccccccc-CCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHH
Q 018606 82 GSLVLDAGCGNGKYLGL-NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~~-~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~ 159 (353)
..++||+|+|.|..+.. .|.. .|.+.++|..|+...++++..++... ...-.+-.||+|.|..++.---+ +-+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~--ew~~t~~k~dli~clNlLDRc~~---p~k 187 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEI--EWLQTDVKLDLILCLNLLDRCFD---PFK 187 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeeh--hhhhcCceeehHHHHHHHHhhcC---hHH
Confidence 36999999999998764 4443 89999999999999999987765431 11112446899999999876655 688
Q ss_pred HHHHHHhcccc-CcEEEEEE
Q 018606 160 AIEELVRVVKK-GSLVLITV 178 (353)
Q Consensus 160 ~l~el~rvLkp-gG~lli~~ 178 (353)
+|..++.+|+| +|++++..
T Consensus 188 LL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 188 LLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHHhccCCCcEEEEE
Confidence 99999999999 88887764
No 209
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.66 E-value=0.00016 Score=68.08 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=67.2
Q ss_pred CCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc--CCe---E--EEeeCC--CCCCCCCCccEEEechh
Q 018606 82 GSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--GHE---V--LVADAV--NLPYRSDFGDAAISIAV 147 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~--~i~---~--~~~D~~--~l~~~~~~fD~Vi~~~v 147 (353)
..+|||+|||+|.-+- . ..-..++++|.|+.|++.++.. ... . ...+.. ..++ ...|+|++.++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~~ 111 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASYV 111 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEehh
Confidence 3589999999998532 1 2234899999999999998875 110 0 001111 1122 23399999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
|..+++ +.+..+++.+.+.+.+ .|+|...+...
T Consensus 112 L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 112 LNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 999998 5578999999888766 77777665443
No 210
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00032 Score=61.05 Aligned_cols=101 Identities=13% Similarity=0.307 Sum_probs=68.5
Q ss_pred CCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechh---
Q 018606 82 GSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAV--- 147 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~v--- 147 (353)
...+||||||+|.... ..++..+.++|+++.+++.-++. ++..++.|+..- ++.++.|+++.+--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 4689999999998532 36778999999999998774443 467788887653 23477788776321
Q ss_pred ------------hhhc---CChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 148 ------------LHHL---STESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 148 ------------l~h~---~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
.-+. ...+-..+++..+-.+|.|.|.+++.......
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 0111 11111346677777888999999998765443
No 211
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.57 E-value=0.00012 Score=67.43 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=56.8
Q ss_pred CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
.++++..|||||.|||.++. +..+..|+++++.+.|+....++ .+.++.+|+...+++ .||.+|++
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 57889999999999999976 37788999999999999998887 368899999988754 68999884
No 212
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00094 Score=65.17 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=77.8
Q ss_pred HHHhCCCCCCEEEEECCccccc----ccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCC
Q 018606 74 TFLNSLPSGSLVLDAGCGNGKY----LGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSD 137 (353)
Q Consensus 74 ~~l~~l~~~~~VLDvGCG~G~~----~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~---~~~~ 137 (353)
..+....+|.+|||+++++|.= +.+ ..+..|+++|+++.-++..+++ ++.+...|...++ ...+
T Consensus 149 a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 149 ALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence 3444667899999999999972 223 3356789999999877776665 3457778877654 2223
Q ss_pred CccEEEe------chhhhhcCC------hh-------HHHHHHHHHHhccccCcEEEEEEcCCCccch
Q 018606 138 FGDAAIS------IAVLHHLST------ES-------RRKKAIEELVRVVKKGSLVLITVWAVEQEDK 186 (353)
Q Consensus 138 ~fD~Vi~------~~vl~h~~~------~e-------~~~~~l~el~rvLkpgG~lli~~~~~~~~~~ 186 (353)
.||.|+. .++|.--++ .+ ...++|....++|||||+|+-++-+...+..
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eEN 296 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEEN 296 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcC
Confidence 5999988 334422111 11 1467899999999999999999877655443
No 213
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.48 E-value=0.00072 Score=61.07 Aligned_cols=97 Identities=20% Similarity=0.169 Sum_probs=73.2
Q ss_pred HhCCCCCCEEEEECCcccccc-----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC------CCCC
Q 018606 76 LNSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL------PYRS 136 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~G~~~-----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l------~~~~ 136 (353)
+..+-..++.||||.=||.-+ ....+++|+++|+.+...+++.+. .++++++++... ....
T Consensus 68 li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 68 LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence 334455689999999888743 236678999999999988887654 578888887651 1456
Q ss_pred CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
++||+++.-+ ..+ .....+.++.++||+||+|++..
T Consensus 148 ~tfDfaFvDa----dK~--nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 148 GTFDFAFVDA----DKD--NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CceeEEEEcc----chH--HHHHHHHHHHhhcccccEEEEec
Confidence 8999998753 222 25578999999999999998874
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00028 Score=65.41 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=58.7
Q ss_pred CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCC-CccEEEechhhh
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSD-FGDAAISIAVLH 149 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~-~fD~Vi~~~vl~ 149 (353)
.+.++..|||||+|.|.++.. ..+..|+++++.+.++...+++ +++++.+|+...+++.- .++.|+++- =+
T Consensus 27 ~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNl-PY 105 (259)
T COG0030 27 NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANL-PY 105 (259)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcC-CC
Confidence 345588999999999999863 5667899999999999998887 58999999999988653 456776643 23
Q ss_pred hcCC
Q 018606 150 HLST 153 (353)
Q Consensus 150 h~~~ 153 (353)
++++
T Consensus 106 ~Iss 109 (259)
T COG0030 106 NISS 109 (259)
T ss_pred cccH
Confidence 3444
No 215
>PRK00536 speE spermidine synthase; Provisional
Probab=97.46 E-value=0.00063 Score=63.42 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=65.0
Q ss_pred CCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606 80 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
+...+||=||.|.|..++. .+. +|+-+|+.+.+++.|++. +++++.. +. ....++||+||+-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence 4457999999999998753 333 999999999999999984 3444431 11 1123689999987
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.. .+ ..+.+.+.|.|+|||.++...
T Consensus 147 s~----~~----~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PD----IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CC----hHHHHHHHHhcCCCcEEEECC
Confidence 43 22 567899999999999998864
No 216
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.45 E-value=0.0002 Score=67.95 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=54.9
Q ss_pred HHHHHHhCCCCCCEEEEECCccccccc----cC-CCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC--CCCC-
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP--YRSD- 137 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~-~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~--~~~~- 137 (353)
.+...+. +.++..+||.+||.|.++. .. +.+.|+|+|.++.|++.|+++ ++.++++|+.++. .+.+
T Consensus 10 Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 10 EVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCC
Confidence 3444443 3577899999999999754 23 368999999999999999875 5778888877653 2122
Q ss_pred -CccEEEech
Q 018606 138 -FGDAAISIA 146 (353)
Q Consensus 138 -~fD~Vi~~~ 146 (353)
.+|.|++..
T Consensus 89 ~~vDgIl~DL 98 (296)
T PRK00050 89 GKVDGILLDL 98 (296)
T ss_pred CccCEEEECC
Confidence 688888744
No 217
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.44 E-value=0.00035 Score=64.73 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC-CCCC-CccEE
Q 018606 80 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP-YRSD-FGDAA 142 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~-~~~~-~fD~V 142 (353)
+...+||=||-|.|..+.. .+...++.+|+++.+++.|++. +++++.+|+...- -..+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3567999999999987542 3346999999999999999874 4688888886532 2233 89999
Q ss_pred Eechhh-----hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 143 ISIAVL-----HHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 143 i~~~vl-----~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
+.-..- ..+-+ .++++.+.+.|+|||.+++...
T Consensus 155 i~D~~dp~~~~~~l~t----~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFT----REFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSS----HHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccC----HHHHHHHHhhcCCCcEEEEEcc
Confidence 984432 11222 5789999999999999998863
No 218
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.42 E-value=0.00098 Score=70.77 Aligned_cols=78 Identities=22% Similarity=0.174 Sum_probs=52.9
Q ss_pred EEEEEeCCHHHHHHHHHc----C----CeEEEeeCCCCCCC--CCCccEEEechhhh-hcCChhHHHHHHHHHHhcc---
Q 018606 103 FFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYR--SDFGDAAISIAVLH-HLSTESRRKKAIEELVRVV--- 168 (353)
Q Consensus 103 ~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~l~~~--~~~fD~Vi~~~vl~-h~~~~e~~~~~l~el~rvL--- 168 (353)
.++|+|+++.+++.|+.+ + +.+.++|+.+++.+ .++||+|+++--.. -+.+......+..++.+.|
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 699999999999999987 2 57889999887644 35799999974221 2222222333434444444
Q ss_pred ccCcEEEEEEcC
Q 018606 169 KKGSLVLITVWA 180 (353)
Q Consensus 169 kpgG~lli~~~~ 180 (353)
.+|+.+++.+..
T Consensus 338 ~~g~~~~llt~~ 349 (702)
T PRK11783 338 FGGWNAALFSSS 349 (702)
T ss_pred CCCCeEEEEeCC
Confidence 489888777653
No 219
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.42 E-value=0.00086 Score=62.34 Aligned_cols=100 Identities=21% Similarity=0.223 Sum_probs=66.3
Q ss_pred CEEEEECCcccc--cc-----ccCCCcEEEEEeCCHHHHHHHHHc-----C--CeEEEeeCCCCC-----------CCCC
Q 018606 83 SLVLDAGCGNGK--YL-----GLNPDCFFVGCDISPSLIKICVDR-----G--HEVLVADAVNLP-----------YRSD 137 (353)
Q Consensus 83 ~~VLDvGCG~G~--~~-----~~~~~~~v~gvD~S~~~l~~a~~~-----~--i~~~~~D~~~l~-----------~~~~ 137 (353)
...||||||-=. .. ...|.++|+-+|..+-.+..++.. + ..++++|+.+.. +.-.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 689999999432 11 138999999999999999887775 3 578999998621 1112
Q ss_pred CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
.-=.+++.++|||+++.+++..++..++..|.||..|+|+..+.+
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 333688899999999988899999999999999999999988765
No 220
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.37 E-value=0.00029 Score=68.70 Aligned_cols=89 Identities=10% Similarity=0.076 Sum_probs=58.3
Q ss_pred CEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-----------C-----CC
Q 018606 83 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-----------R-----SD 137 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~-----------~-----~~ 137 (353)
.+|||++||+|.+... .....|+|+|+++.|++.|+++ +++|+.+|+.++.- . ..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 4799999999997532 2224899999999999999986 46789998876321 0 11
Q ss_pred CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.||+|+..-- .......++..+. +|+++++|+.-
T Consensus 279 ~~d~v~lDPP-----R~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 279 NCSTIFVDPP-----RAGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred CCCEEEECCC-----CCCCcHHHHHHHH---cCCcEEEEEcC
Confidence 3788877321 0000123444443 47888888753
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.36 E-value=0.0012 Score=59.66 Aligned_cols=91 Identities=21% Similarity=0.097 Sum_probs=67.4
Q ss_pred CCEEEEECCccccc----cccCCCcEEEEEeCCHHHHHHHH---Hc----CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606 82 GSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICV---DR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 82 ~~~VLDvGCG~G~~----~~~~~~~~v~gvD~S~~~l~~a~---~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h 150 (353)
+.+++|||+|.|.= +...|+..|+-+|....-+...+ +. |++++++-++++.-....||+|++-++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 58999999999972 33578888999998876544433 32 688999988887632222999999875
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.+ ...++.-+...+|+||.+++.-+
T Consensus 145 -a~---L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 145 -AS---LNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred -cc---hHHHHHHHHHhcccCCcchhhhH
Confidence 23 56677778899999998876543
No 222
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.30 E-value=0.00047 Score=66.13 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=62.0
Q ss_pred CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHH-HHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChh
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKIC-VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 155 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a-~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e 155 (353)
+.+|.++|||||++|.++.. ..+..|+|||..+ |-... ...++.....|......+.+.+|+++|-.+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------ 281 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------ 281 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC------
Confidence 56899999999999998753 5677999999655 33322 23368888887766543367899999976532
Q ss_pred HHHHHHHHHHhccccC
Q 018606 156 RRKKAIEELVRVVKKG 171 (353)
Q Consensus 156 ~~~~~l~el~rvLkpg 171 (353)
+.+++.-|.+.|..|
T Consensus 282 -P~rva~lm~~Wl~~g 296 (357)
T PRK11760 282 -PARVAELMAQWLVNG 296 (357)
T ss_pred -HHHHHHHHHHHHhcC
Confidence 567777788888766
No 223
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=8.6e-05 Score=62.90 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=61.1
Q ss_pred EEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHH
Q 018606 84 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 163 (353)
Q Consensus 84 ~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~e 163 (353)
-.+-||||.=.+ +|+...+-+.-.+ .+++++--....+|.+++.|+|++.++++|+.-.| -..++++
T Consensus 5 ~kv~ig~G~~r~---npgWi~~d~ed~~---------~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E-g~~alke 71 (185)
T COG4627 5 EKVKIGAGGKRV---NPGWIITDVEDRP---------EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE-GTSALKE 71 (185)
T ss_pred eEEEEecccccc---CCCceeeehhccc---------ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH-HHHHHHH
Confidence 467799997433 3454333221111 12222222234578899999999999999999766 6899999
Q ss_pred HHhccccCcEEEEEEcCCCc
Q 018606 164 LVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 164 l~rvLkpgG~lli~~~~~~~ 183 (353)
++|.|||||.|.|.++...-
T Consensus 72 chr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 72 CHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred HHHHhCcCcEEEEEcCCcch
Confidence 99999999999999987654
No 224
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.28 E-value=0.00044 Score=67.70 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=59.8
Q ss_pred CEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-C-CC--------------CC
Q 018606 83 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P-YR--------------SD 137 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-~-~~--------------~~ 137 (353)
.+|||++||+|.+... .....|+|+|.++.+++.|+++ +++++.+|+... + +. ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 5799999999997532 2234899999999999999876 467899998652 1 10 12
Q ss_pred CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.||+|+..--=.-+ ...+++.+. +|+++++++.-.
T Consensus 288 ~~D~v~lDPPR~G~-----~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 288 NFSTIFVDPPRAGL-----DDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred CCCEEEECCCCCCC-----cHHHHHHHH---ccCCEEEEEeCH
Confidence 58999874210000 133444443 378888777643
No 225
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.19 E-value=0.0019 Score=62.30 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=81.9
Q ss_pred HHHhCCCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHc-------C-CeEEEeeCCCCCCCCCCccEE
Q 018606 74 TFLNSLPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------G-HEVLVADAVNLPYRSDFGDAA 142 (353)
Q Consensus 74 ~~l~~l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~-------~-i~~~~~D~~~l~~~~~~fD~V 142 (353)
..+....+|.+|||+=||-|.|+-. ..+ ..|+++|+++..+++++++ + +..+++|+..+....+.+|-|
T Consensus 181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrI 260 (341)
T COG2520 181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRI 260 (341)
T ss_pred HHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEE
Confidence 3444557799999999999998642 223 3499999999999999886 2 678999999987655889999
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
++...- + -..++....+.+++||.+.++.+..+..
T Consensus 261 im~~p~----~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 261 IMGLPK----S---AHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred EeCCCC----c---chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 997532 2 3567888888999999999998876654
No 226
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.18 E-value=0.0002 Score=63.27 Aligned_cols=106 Identities=21% Similarity=0.143 Sum_probs=69.0
Q ss_pred HHHHhCC-CCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc----C----CeEEEeeCCC-CC---CCC
Q 018606 73 ATFLNSL-PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G----HEVLVADAVN-LP---YRS 136 (353)
Q Consensus 73 ~~~l~~l-~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~-l~---~~~ 136 (353)
...+... -+|.++||+-||+|.+.- +..| ..|+.+|.+...++.++++ + +.++.+|+.. ++ ...
T Consensus 33 FniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~ 112 (183)
T PF03602_consen 33 FNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKG 112 (183)
T ss_dssp HHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCT
T ss_pred HHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccC
Confidence 3344433 468999999999999742 3455 4999999999999998887 2 5678888653 21 246
Q ss_pred CCccEEEechhhhhcCChhHHHHHHHHHH--hccccCcEEEEEEcCC
Q 018606 137 DFGDAAISIAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWAV 181 (353)
Q Consensus 137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~--rvLkpgG~lli~~~~~ 181 (353)
..||+|++.--...-. . ...++..+. .+|+++|.+++.....
T Consensus 113 ~~fDiIflDPPY~~~~--~-~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 113 EKFDIIFLDPPYAKGL--Y-YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp S-EEEEEE--STTSCH--H-HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCceEEEECCCcccch--H-HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 8999999853221110 0 245666666 7999999999887553
No 227
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.17 E-value=0.0038 Score=58.57 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=60.4
Q ss_pred CEEEEECCccccccc------cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606 83 SLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIAV 147 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~------~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~~~~~~fD~Vi~~~v 147 (353)
++|+=||||+=-++. ..++..++++|+++..++.+++. ++.|+.+|....+..-..||+|+..+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 599999999866532 24577999999999999888763 579999999887655578999998776
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
...-..+ -.++|..+.+.++||..+++-.
T Consensus 202 Vg~~~e~--K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 202 VGMDAEP--KEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -S----S--HHHHHHHHHHHS-TTSEEEEEE
T ss_pred cccccch--HHHHHHHHHhhCCCCcEEEEec
Confidence 5433222 5789999999999999888773
No 228
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0033 Score=58.17 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=79.1
Q ss_pred CCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCC--CCCCccEE
Q 018606 78 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPY--RSDFGDAA 142 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~--~~~~fD~V 142 (353)
.+.||++||+-|.|+|.+.. ..|-++++-+|+-....+.|++. ++++..-|+...-| .+..+|+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 57899999999999999742 36778999999988877777664 67899999988654 35688988
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccCc-EEEEEEcCCCccch
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKGS-LVLITVWAVEQEDK 186 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG-~lli~~~~~~~~~~ 186 (353)
+.. ++. +..++.-+..+||.+| +++-..++.||...
T Consensus 182 FLD-----lPa---Pw~AiPha~~~lk~~g~r~csFSPCIEQvqr 218 (314)
T KOG2915|consen 182 FLD-----LPA---PWEAIPHAAKILKDEGGRLCSFSPCIEQVQR 218 (314)
T ss_pred EEc-----CCC---hhhhhhhhHHHhhhcCceEEeccHHHHHHHH
Confidence 774 455 6778888888998876 77766788887553
No 229
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0034 Score=55.70 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=73.5
Q ss_pred CCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHH----HHHHHHHc-CCeEEEeeCCCCC---CCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNLP---YRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~----~l~~a~~~-~i~~~~~D~~~l~---~~~~~fD~Vi~~ 145 (353)
.+.+|++||-+|+.+|..... .+...++|+++|+. ++..|+++ |+--+..|+..-. .--+..|+|+.-
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe
Confidence 356899999999999997643 44678999999986 46677777 7877888887632 112457888774
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+..+.+..-++.++...||+||.+++..-+
T Consensus 153 -----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231)
T COG1889 153 -----VAQPNQAEILADNAEFFLKKGGYVVIAIKA 182 (231)
T ss_pred -----cCCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence 334444667888999999999988888644
No 230
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.01 E-value=0.00076 Score=59.09 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=69.2
Q ss_pred CEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606 83 SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 153 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~ 153 (353)
..+.|+|+|+|.+.- ....-+|++++..+.-.+.|.++ +++++.+|+....| ...|+|+|-..--.+-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhhc
Confidence 689999999999753 23345999999999999999987 67899999999888 44599988553333333
Q ss_pred hhHHHHHHHHHHhccccCcEEE
Q 018606 154 ESRRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 154 ~e~~~~~l~el~rvLkpgG~ll 175 (353)
++ ...++..+...||-++.++
T Consensus 112 E~-qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 112 EK-QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cc-ccHHHHHHHHHhhcCCccc
Confidence 32 4667888888888888765
No 231
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.97 E-value=0.004 Score=56.67 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=72.4
Q ss_pred CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCH----HHHHHHHHc-CCeEEEeeCCCCC---CCCCCccEEEe
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----SLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAIS 144 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~----~~l~~a~~~-~i~~~~~D~~~l~---~~~~~fD~Vi~ 144 (353)
+++||++||-+|+++|..... -|...|++++.|. .++..|+++ |+--+.-|+..-. ..-...|+|++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 568999999999999997643 5777999999987 467788877 7777777877522 11246777776
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
. +..+++...+.-+....||+||.++|+.-+
T Consensus 233 D-----vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 D-----VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred c-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 4 333443455566778899999999999754
No 232
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0054 Score=59.76 Aligned_cols=103 Identities=25% Similarity=0.253 Sum_probs=70.5
Q ss_pred HhCCCCCCEEEEECCccccccc--------cCCCc-----------------------------------EEEEEeCCHH
Q 018606 76 LNSLPSGSLVLDAGCGNGKYLG--------LNPDC-----------------------------------FFVGCDISPS 112 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~G~~~~--------~~~~~-----------------------------------~v~gvD~S~~ 112 (353)
++.-.++..++|--||+|.++. ..||. .++|+|+++.
T Consensus 186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r 265 (381)
T COG0116 186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR 265 (381)
T ss_pred HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence 4455677899999999999752 12221 3779999999
Q ss_pred HHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhh-hhcCChh----HHHHHHHHHHhccccCcEEEEEE
Q 018606 113 LIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL-HHLSTES----RRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 113 ~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl-~h~~~~e----~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+++.|+.+ -|.|.++|+..++-+-+.+|+|||+--- .-+.+.+ ....+.+.+.+.++--++++++.
T Consensus 266 ~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 266 HIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999987 2789999999987544789999995311 1122221 12345556666666666666664
No 233
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.88 E-value=0.0027 Score=62.34 Aligned_cols=90 Identities=19% Similarity=0.126 Sum_probs=68.2
Q ss_pred CCEEEEECCccccccc-c---CCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCCccEEEechhh
Q 018606 82 GSLVLDAGCGNGKYLG-L---NPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAISIAVL 148 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~-~---~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~-~~~~~fD~Vi~~~vl 148 (353)
+-+|||+.||+|.... . .++ ..|+++|+++..++.++++ ++.++.+|+..+- .....||+|...- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 3589999999999742 1 224 4899999999999999876 2568888877643 1235799998854 2
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.. +..++..+.+.+++||.++++.
T Consensus 124 ---Gs---~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GT---PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CC---cHHHHHHHHHhcccCCEEEEEe
Confidence 22 3468999999999999999993
No 234
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.85 E-value=0.0027 Score=65.16 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=44.7
Q ss_pred CCEEEEECCcccccccc----C------C--CcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-----CCCC
Q 018606 82 GSLVLDAGCGNGKYLGL----N------P--DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-----YRSD 137 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~~----~------~--~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~-----~~~~ 137 (353)
..+|||.|||+|.++.. . . ...++|+|+++.++..|+.+ ++.+...|..... -..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 45899999999998631 1 1 25889999999999988865 2344545433211 1125
Q ss_pred CccEEEech
Q 018606 138 FGDAAISIA 146 (353)
Q Consensus 138 ~fD~Vi~~~ 146 (353)
.||+||.+-
T Consensus 112 ~fD~IIgNP 120 (524)
T TIGR02987 112 LFDIVITNP 120 (524)
T ss_pred cccEEEeCC
Confidence 799999943
No 235
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.77 E-value=0.0031 Score=59.58 Aligned_cols=109 Identities=19% Similarity=0.229 Sum_probs=75.6
Q ss_pred hCCCCCCEEEEECCcccccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEE
Q 018606 77 NSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAA 142 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~V 142 (353)
....++..|||+++|+|.=+ .. .....+++.|++..-+...+++ ++.+...|..... .....||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 35678899999999999732 22 3367999999999988777665 3455556766652 223469999
Q ss_pred Ee------chhhhhcCChh-------------HHHHHHHHHHhcc----ccCcEEEEEEcCCCccc
Q 018606 143 IS------IAVLHHLSTES-------------RRKKAIEELVRVV----KKGSLVLITVWAVEQED 185 (353)
Q Consensus 143 i~------~~vl~h~~~~e-------------~~~~~l~el~rvL----kpgG~lli~~~~~~~~~ 185 (353)
+. .+++..-++.. ...++|....+.+ ||||+++-++-+.....
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE 226 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence 98 22333322211 1457899999999 99999999986655443
No 236
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.77 E-value=0.0045 Score=52.16 Aligned_cols=92 Identities=23% Similarity=0.294 Sum_probs=57.8
Q ss_pred CCCCEEEEECCccccccc---c-----CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCCccE
Q 018606 80 PSGSLVLDAGCGNGKYLG---L-----NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDA 141 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~---~-----~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~~~~~~fD~ 141 (353)
.+...|+|+|||.|.+.. . .++..|+|+|.++.+++.+.++ .+.+..+++..... ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 566899999999998642 2 4788999999999998888776 23344444333222 345566
Q ss_pred EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
++..++=.-+. ..+|+.+.+ ++-.+++.++.
T Consensus 103 ~vgLHaCG~Ls-----~~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 103 LVGLHACGDLS-----DRALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEEeecccchH-----HHHHHHHHH---cCCCEEEEcCC
Confidence 66654333232 234554444 66666665544
No 237
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.68 E-value=0.006 Score=56.09 Aligned_cols=100 Identities=23% Similarity=0.338 Sum_probs=64.3
Q ss_pred CCCCCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606 78 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAV 147 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~v 147 (353)
.+++..+|+|||||-=-++ ...++..++|+|++..+++..... ..++...|...-+. ....|+.+..-+
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~-~~~~DlaLllK~ 180 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP-KEPADLALLLKT 180 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT-TSEESEEEEET-
T ss_pred cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC-CCCcchhhHHHH
Confidence 4566789999999987654 346678999999999999887765 45778888887653 567799999988
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
++.+.... ....-++...++-. .++|+++..
T Consensus 181 lp~le~q~--~g~g~~ll~~~~~~-~~vVSfPtr 211 (251)
T PF07091_consen 181 LPCLERQR--RGAGLELLDALRSP-HVVVSFPTR 211 (251)
T ss_dssp HHHHHHHS--TTHHHHHHHHSCES-EEEEEEES-
T ss_pred HHHHHHHh--cchHHHHHHHhCCC-eEEEecccc
Confidence 88775432 23333444444332 566666543
No 238
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.66 E-value=0.011 Score=53.04 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=68.5
Q ss_pred CCCCEEEEECCcccccc---ccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCC-C-CCCCCCccEEEechhh
Q 018606 80 PSGSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN-L-PYRSDFGDAAISIAVL 148 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~---~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~-l-~~~~~~fD~Vi~~~vl 148 (353)
..|.+||.||-|-|... +..+-..=+-|+..+..++..+.. ++.++.+--++ + .++++.||-|+--..-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 57889999999999853 334445556789999999988876 34444443332 1 2668889999876543
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
.+..+ ...+.+.+.|+|||+|++-..
T Consensus 180 e~yEd---l~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 180 ELYED---LRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHHHH---HHHHHHHHhhhcCCCceEEEe
Confidence 44433 678899999999999987554
No 239
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.012 Score=51.95 Aligned_cols=97 Identities=21% Similarity=0.142 Sum_probs=67.5
Q ss_pred CCCCEEEEECCcccccc-c-cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-CCC-CCccEEEec
Q 018606 80 PSGSLVLDAGCGNGKYL-G-LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRS-DFGDAAISI 145 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~-~-~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~~~-~~fD~Vi~~ 145 (353)
-.|.++||+=+|+|.+- . +..| ..++.+|.+...+...+++ ...++..|+... + ... +.||+|+.-
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 46889999999999974 2 3444 4999999999999999887 457788887742 1 212 259999996
Q ss_pred hhhhh-cCChhHHHHHHHH--HHhccccCcEEEEEEc
Q 018606 146 AVLHH-LSTESRRKKAIEE--LVRVVKKGSLVLITVW 179 (353)
Q Consensus 146 ~vl~h-~~~~e~~~~~l~e--l~rvLkpgG~lli~~~ 179 (353)
--.+. +.+ ....+.. -..+|+|+|.+++..-
T Consensus 122 PPy~~~l~~---~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLD---KELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCccchhh---HHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 54441 111 1223333 5578999999988854
No 240
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.51 E-value=0.0012 Score=57.22 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=42.2
Q ss_pred EEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCC-ccEEEe
Q 018606 84 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDF-GDAAIS 144 (353)
Q Consensus 84 ~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~--~~~~~-fD~Vi~ 144 (353)
.|+|+.||.|..+.. .....|+++|+++..++.|+.+ +++++++|+.++. +.... +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 699999999997542 3355899999999999999987 5789999988743 22222 788886
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.49 E-value=0.0086 Score=57.64 Aligned_cols=97 Identities=22% Similarity=0.239 Sum_probs=71.5
Q ss_pred CCCCCCEEEEECCccccccc---cCCC-cEEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCC-CCCCCC
Q 018606 78 SLPSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNL-PYRSDF 138 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~---~~~~-~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~l-~~~~~~ 138 (353)
.++...++|-+|.|.|--++ ..|+ .+|+-+|+.+.|++.+++. +++++..|+.+. .-..+.
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 34555799999999998765 3664 4999999999999999854 467788887763 233468
Q ss_pred ccEEEech------hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 139 GDAAISIA------VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 139 fD~Vi~~~------vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
||+||... ++.-+- -.++..-+.|.|+++|++++..
T Consensus 366 fD~vIVDl~DP~tps~~rlY----S~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLY----SVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccEEEEeCCCCCCcchhhhh----hHHHHHHHHHhcCcCceEEEec
Confidence 99998742 222222 2467778889999999999875
No 242
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.42 E-value=0.0072 Score=56.40 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=60.5
Q ss_pred CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC---CCccEEEechhh
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS---DFGDAAISIAVL 148 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~---~~fD~Vi~~~vl 148 (353)
+.++..|||||+|+|.++.. ..+..++++|+++.+++..+++ +++++.+|+..+.... .....|+++--.
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEecc
Confidence 44789999999999999763 3337999999999999999984 6899999999987654 333455554322
Q ss_pred hhcCChhHHHHHHHHHHhcccc
Q 018606 149 HHLSTESRRKKAIEELVRVVKK 170 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkp 170 (353)
++. ..++.++...-+.
T Consensus 108 -~is-----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 108 -NIS-----SPILRKLLELYRF 123 (262)
T ss_dssp -TGH-----HHHHHHHHHHGGG
T ss_pred -cch-----HHHHHHHhhcccc
Confidence 222 3456666653333
No 243
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.0057 Score=57.69 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=77.4
Q ss_pred HHHHHHHhhccccccccccChHHHHHHHhCCCC-------CCEEEEECCccccccc--cCCCcEEEEEeCCHHHH-----
Q 018606 49 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPS-------GSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLI----- 114 (353)
Q Consensus 49 ~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~-------~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l----- 114 (353)
.+..++..++..+...|...++.++..|..+-| ...||=-|||.|+++- ...|..+-|-++|--|+
T Consensus 111 ~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~F 190 (369)
T KOG2798|consen 111 TLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSF 190 (369)
T ss_pred HHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 334444445554555677777777777765543 3589999999999863 23344555556655553
Q ss_pred --HHHHHc----------------------------------------CCeEEEeeCCCCC---CCCCCccEEEechhhh
Q 018606 115 --KICVDR----------------------------------------GHEVLVADAVNLP---YRSDFGDAAISIAVLH 149 (353)
Q Consensus 115 --~~a~~~----------------------------------------~i~~~~~D~~~l~---~~~~~fD~Vi~~~vl~ 149 (353)
..++.. .+....||+...- -..+.||+|+.++.|.
T Consensus 191 iLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID 270 (369)
T KOG2798|consen 191 ILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID 270 (369)
T ss_pred HHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee
Confidence 222211 1122334444421 1124799999987665
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
--.+ ..+.|..+..+|||||+.+=.
T Consensus 271 Ta~N---ileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 271 TAHN---ILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred chHH---HHHHHHHHHHhccCCcEEEec
Confidence 4444 789999999999999987533
No 244
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.22 E-value=0.0041 Score=62.23 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=68.7
Q ss_pred CEEEEECCccccccccCCCcEEEEEe----CCHHHHHHHHHcCC-eEEEeeCCCCCCCCCCccEEEechhhhhcCChhHH
Q 018606 83 SLVLDAGCGNGKYLGLNPDCFFVGCD----ISPSLIKICVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~~~~~~~v~gvD----~S~~~l~~a~~~~i-~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~ 157 (353)
..|+|..+|.|.|+.+.....|..+- ..++-+...-++|+ -+.+.=.+.++.-+.+||+|.+.++|.+..+.-..
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~ 446 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEM 446 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccH
Confidence 58999999999998652222222222 23344555555553 23333345577668999999999999888776667
Q ss_pred HHHHHHHHhccccCcEEEEEE
Q 018606 158 KKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 158 ~~~l~el~rvLkpgG~lli~~ 178 (353)
..+|-||-|+|||||.++|-+
T Consensus 447 ~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 447 EDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred HHHHHHhHhhcCCCceEEEec
Confidence 899999999999999999975
No 245
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.021 Score=57.09 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=66.4
Q ss_pred CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC---CCCccEEEechh
Q 018606 80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISIAV 147 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~---~~~fD~Vi~~~v 147 (353)
.++.++||+=||.|.+... ....+|+|+|+++.+++.|+++ |+.|..++++.+... ...+|+|+..-
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP- 370 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP- 370 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC-
Confidence 4667999999999998643 4556999999999999999886 578899998886532 35789998731
Q ss_pred hhhcCChhHH-HHHHHHHHhccccCcEEEEEEc
Q 018606 148 LHHLSTESRR-KKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 148 l~h~~~~e~~-~~~l~el~rvLkpgG~lli~~~ 179 (353)
+..-. ..+++.+.+ ++|-.+++|+.-
T Consensus 371 -----PR~G~~~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 371 -----PRAGADREVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred -----CCCCCCHHHHHHHHh-cCCCcEEEEeCC
Confidence 11111 244555544 467777777753
No 246
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.15 E-value=0.021 Score=50.87 Aligned_cols=96 Identities=19% Similarity=0.318 Sum_probs=58.3
Q ss_pred CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCCCCCCCCccEE
Q 018606 81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVNLPYRSDFGDAA 142 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~l~~~~~~fD~V 142 (353)
....+.|||||-|.++- ..|...++|+++-....++.+++ ++.+...++... -.+.|.--
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kg 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKG 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhc
Confidence 44679999999998753 47888999999988877776665 344444443321 11111111
Q ss_pred EechhhhhcCChhH----------HHHHHHHHHhccccCcEEEEEE
Q 018606 143 ISIAVLHHLSTESR----------RKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 143 i~~~vl~h~~~~e~----------~~~~l~el~rvLkpgG~lli~~ 178 (353)
...-.++.++++.- -..++.+..-+|++||.++..+
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 11111111222100 1357888899999999998775
No 247
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.10 E-value=0.022 Score=48.00 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=54.2
Q ss_pred EEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCCccEEEechhhhhcCC--------hhHHHHHHHHH
Q 018606 103 FFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLST--------ESRRKKAIEEL 164 (353)
Q Consensus 103 ~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~--~~~~~fD~Vi~~~vl~h~~~--------~e~~~~~l~el 164 (353)
+|+|+|+-+.+++..+++ +++++...-.++. .+.+.+|+++.+. .++|. ++.-..+|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999887 4778887766654 2334788887642 23332 23356889999
Q ss_pred HhccccCcEEEEEEcCCCcc
Q 018606 165 VRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 165 ~rvLkpgG~lli~~~~~~~~ 184 (353)
.++|+|||++.|..+.....
T Consensus 79 l~lL~~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPG 98 (140)
T ss_dssp HHHEEEEEEEEEEE--STCH
T ss_pred HHhhccCCEEEEEEeCCCCC
Confidence 99999999999999886653
No 248
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.09 E-value=0.023 Score=50.26 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=64.7
Q ss_pred hCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCH----------HHHHHHHHc---CCeEEEeeCCCCCCCCCC
Q 018606 77 NSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----------SLIKICVDR---GHEVLVADAVNLPYRSDF 138 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~----------~~l~~a~~~---~i~~~~~D~~~l~~~~~~ 138 (353)
..+++|++|+|+=.|.|.+++. .+...|++.=..+ .+-..+++. +.+.+-.+...++ +...
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 3689999999999999998764 3445777664433 233333333 4555555555555 3444
Q ss_pred ccEEEechhhhhcCC----hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 139 GDAAISIAVLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 139 fD~Vi~~~vl~h~~~----~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.|++.....-|-+.. ......+..++++.|||||.+++..-.
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 566555322221110 112578899999999999999998643
No 249
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.021 Score=52.04 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=66.1
Q ss_pred CCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHcCCeEEEe---eCCCCC---CCCCCccEEEechhhh
Q 018606 79 LPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHEVLVA---DAVNLP---YRSDFGDAAISIAVLH 149 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~---D~~~l~---~~~~~fD~Vi~~~vl~ 149 (353)
..++..+||||+-||.|+.. ..| ..|+|+|..-..+..--+...+++.. |+..+. +. +..|++++--++.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFI 155 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFI 155 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehh
Confidence 35789999999999999753 444 49999999987776655554444333 333332 22 3568888876554
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
. ...+|..+..+|+|+|.++.-+
T Consensus 156 S------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 156 S------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred h------HHHHHHHHHHhcCCCceEEEEe
Confidence 2 4678999999999999887775
No 250
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.96 E-value=0.017 Score=56.36 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=36.3
Q ss_pred EEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC
Q 018606 84 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN 131 (353)
Q Consensus 84 ~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~ 131 (353)
.|||+-||.|.+... ....+|+|+|.++.+++.|+++ +++|+.+++.+
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 899999999998542 4456999999999999999876 57888877654
No 251
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.015 Score=55.72 Aligned_cols=99 Identities=26% Similarity=0.268 Sum_probs=62.5
Q ss_pred CEEEEECCcccccccc----CCCc-EEEEEeCCHHHHHHHHHc--CC---------eEEEeeCCCCCCCCCCccEEEech
Q 018606 83 SLVLDAGCGNGKYLGL----NPDC-FFVGCDISPSLIKICVDR--GH---------EVLVADAVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~~----~~~~-~v~gvD~S~~~l~~a~~~--~i---------~~~~~D~~~l~~~~~~fD~Vi~~~ 146 (353)
.+|||+|.|+|.-+-+ .|.. .++-++.|+.+-++.-.. ++ .-++.|-..+|. ...|++||...
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~~~ 193 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIVLD 193 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhhhh
Confidence 4699999999985432 3443 666777888765554332 11 123333333443 34566666666
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
-|-+...+......+..+..++.|||.|+|......
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 555555443345589999999999999999976543
No 252
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.84 E-value=0.038 Score=53.34 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=66.6
Q ss_pred hCCCCCCEEEEECCcccc--ccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CCCCCCCccEEEechhhh
Q 018606 77 NSLPSGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN--LPYRSDFGDAAISIAVLH 149 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~--~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--l~~~~~~fD~Vi~~~vl~ 149 (353)
..+.||.+|+=+|+| |. ++. ...+++|+++|.|++-++.|++.+.+.+...... +..-.+.||+|+.... .
T Consensus 162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~ 239 (339)
T COG1064 162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P 239 (339)
T ss_pred cCCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h
Confidence 467899999999999 65 221 2456999999999999999999976554432211 1111224999998654 2
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
..+....+.||+||++++.-..
T Consensus 240 ---------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ---------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---------hhHHHHHHHHhcCCEEEEECCC
Confidence 3567788899999999988654
No 253
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.73 E-value=0.0055 Score=48.61 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=41.5
Q ss_pred EEECCccccccc----c-CCC--cEEEEEeCCH---HHHHHHHHc----CCeEEEeeCCCC--CCCCCCccEEEechhhh
Q 018606 86 LDAGCGNGKYLG----L-NPD--CFFVGCDISP---SLIKICVDR----GHEVLVADAVNL--PYRSDFGDAAISIAVLH 149 (353)
Q Consensus 86 LDvGCG~G~~~~----~-~~~--~~v~gvD~S~---~~l~~a~~~----~i~~~~~D~~~l--~~~~~~fD~Vi~~~vl~ 149 (353)
||||+..|..+. . .+. .+++++|..+ ...+..++. +++++.++.... .++..++|+++.-+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689988887542 1 222 3899999999 455555532 578888887642 133578999988762
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
|- .+.....+..+.+.|+|||.+++-+
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 21 1225678999999999999998754
No 254
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.65 E-value=0.016 Score=48.35 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=30.8
Q ss_pred EEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc
Q 018606 84 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 84 ~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~ 120 (353)
++||||||.|.++. ..+..+++++|+++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 48999999999743 35566999999999999988775
No 255
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.022 Score=57.17 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=45.0
Q ss_pred hCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC
Q 018606 77 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN 131 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~ 131 (353)
..++.+..+||+.||||.+-. ..+-..|+|+++++..++.|+.+ |.+|+++-+++
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 367888999999999999743 34446999999999999999887 57899985554
No 256
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.10 E-value=0.079 Score=52.12 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=37.1
Q ss_pred CCCCCccEEEechhhhhcCCh-h----------------------------------HHHHHHHHHHhccccCcEEEEEE
Q 018606 134 YRSDFGDAAISIAVLHHLSTE-S----------------------------------RRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 134 ~~~~~fD~Vi~~~vl~h~~~~-e----------------------------------~~~~~l~el~rvLkpgG~lli~~ 178 (353)
||+++.+++++.+++||++.. + +...+|+-=.+-|.|||+++++.
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 788999999999999998731 0 02234444456688999999999
Q ss_pred cCCCc
Q 018606 179 WAVEQ 183 (353)
Q Consensus 179 ~~~~~ 183 (353)
.+...
T Consensus 238 ~Gr~~ 242 (386)
T PLN02668 238 LGRTS 242 (386)
T ss_pred ecCCC
Confidence 87643
No 257
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.93 E-value=0.058 Score=51.67 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhhcccccc-ccc-cChHHHHHHHhCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-
Q 018606 46 EKKYVHRVYDAIAPHFSS-TRF-AKWPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR- 120 (353)
Q Consensus 46 e~~~v~~~yd~~a~~y~~-~~~-~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~- 120 (353)
.+..+.+-|+--...|-. |.. ....-+..-++...||..|+|-=.|||.++- ..-|+.|+|.|+.-.|+...|..
T Consensus 171 g~R~li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~ 250 (421)
T KOG2671|consen 171 GQRELIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGED 250 (421)
T ss_pred chHhHhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCC
Confidence 344555566655555543 222 2233444455678999999999999999864 46678999999999888743221
Q ss_pred ---------------CCeEEEeeCCCCCCCC-CCccEEEech------------------------hhhhcCChh-----
Q 018606 121 ---------------GHEVLVADAVNLPYRS-DFGDAAISIA------------------------VLHHLSTES----- 155 (353)
Q Consensus 121 ---------------~i~~~~~D~~~l~~~~-~~fD~Vi~~~------------------------vl~h~~~~e----- 155 (353)
-+.++.+|..+-|+.. ..||+|+|-- .-.|.+..+
T Consensus 251 ~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~ 330 (421)
T KOG2671|consen 251 ESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLS 330 (421)
T ss_pred cchhHhHHHhCCcchhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHH
Confidence 2578899999988665 4899999921 112333211
Q ss_pred -HHHHHHHHHHhccccCcEEEEEEcC
Q 018606 156 -RRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 156 -~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.....|.-..+.|..||++++-.+.
T Consensus 331 ~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 331 SLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred HHHhhHHHhhHhhhhcCceEEEecCc
Confidence 1345566678889999998877653
No 258
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.87 E-value=0.042 Score=48.67 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=60.0
Q ss_pred CCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606 80 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h 150 (353)
-.|.+|||+|+|+|.-.. ...| ..|+..|+.+..+...+-+ ++.+...|... .+..||+++...++..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 467899999999998643 2333 4889999987766555443 35566666554 4678999999887654
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEE
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLI 176 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli 176 (353)
-+- -.+++. ..+.|+..|..++
T Consensus 155 ~~~---a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 155 HTE---ADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred chH---HHHHHH-HHHHHHhCCCEEE
Confidence 332 345666 5555555555554
No 259
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.013 Score=50.22 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=67.4
Q ss_pred CCCEEEEECCccccc----cc-cCCCcEEEEEeCCHHHHHHHHHc---CC-------eEEEeeCCC--CCCCCCCccEEE
Q 018606 81 SGSLVLDAGCGNGKY----LG-LNPDCFFVGCDISPSLIKICVDR---GH-------EVLVADAVN--LPYRSDFGDAAI 143 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~----~~-~~~~~~v~gvD~S~~~l~~a~~~---~i-------~~~~~D~~~--l~~~~~~fD~Vi 143 (353)
.|..||++|.|--.+ +. ..+...|.-.|-++..++-.++. +. .++.-+... .......||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 457899999984333 22 36778999999999888776654 21 111111111 112346899999
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
+..++..- |.+..+++-|.+.|+|.|..++..+-..+
T Consensus 109 aADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 109 AADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred eccchhHH---HHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 99887642 33678899999999999998887655443
No 260
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.81 E-value=0.074 Score=47.84 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=56.1
Q ss_pred EEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCC-CccEEEechhhhhc
Q 018606 85 VLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSD-FGDAAISIAVLHHL 151 (353)
Q Consensus 85 VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~-~fD~Vi~~~vl~h~ 151 (353)
|+||||-.|.+.. ...--+++++|+++.-++.|++. .+++..+|.... +..+ ..|.|+..++=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGE- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHH-
Confidence 6899999998642 23334899999999999999886 478999997652 2233 3688877664222
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 152 STESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 152 ~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.....|.+....++..-.|++.-
T Consensus 79 ----lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 79 ----LIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp ----HHHHHHHHTGGGGTT--EEEEEE
T ss_pred ----HHHHHHHhhHHHhccCCeEEEeC
Confidence 14567777777776666776664
No 261
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.65 E-value=0.26 Score=47.06 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=72.1
Q ss_pred HhCCCCCCEEEEECCcc-cccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----------CCCCCCc
Q 018606 76 LNSLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----------PYRSDFG 139 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~-G~~~----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----------~~~~~~f 139 (353)
+..+++|++||=+|+|+ |.++ ....-.+|+.+|+++.-++.|++.+.+.+.-+.... -+....+
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCC
Confidence 34678999999999997 4432 234456999999999999999998776655433321 1223458
Q ss_pred cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
|+.+....++ ..++.....||+||.+++..|..+..
T Consensus 244 d~~~dCsG~~---------~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 244 DVTFDCSGAE---------VTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred CeEEEccCch---------HHHHHHHHHhccCCEEEEeccCCCcc
Confidence 8888876543 45566678899999998888886654
No 262
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.59 E-value=0.022 Score=51.34 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=50.0
Q ss_pred CCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC----CCCCCCccEEEech
Q 018606 81 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL----PYRSDFGDAAISIA 146 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l----~~~~~~fD~Vi~~~ 146 (353)
....|+|.-||-|..+. ...+..|+++|+++--+..|+.+ .++|+++|+.++ .+....+|+|+.+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 44689999888877643 36778999999999999999987 578999998763 34444566776644
No 263
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.33 E-value=0.22 Score=50.86 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=68.4
Q ss_pred CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----------C----------C
Q 018606 80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----------P----------Y 134 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----------~----------~ 134 (353)
.++.+|+=+|||.=.+.. ...|+.|+++|.++.-++.+++.+.++...|..+. . +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 468899999999844322 25567899999999999999999888665443221 0 0
Q ss_pred CC--CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 135 RS--DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 135 ~~--~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.+ ..+|+||.......-+. +..+.+++.+.+||||+++....
T Consensus 243 ~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCCCCEEEEEcc
Confidence 11 35899999876543333 22335999999999999876643
No 264
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.23 E-value=0.22 Score=49.09 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCCCCEEEEECCcccccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCCccEEE
Q 018606 79 LPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAI 143 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~---~~~~~fD~Vi 143 (353)
..+|.+|||+++-+|.=+ .+ ...+.|++.|.+.+-++..+.+ +..+...|...+| ++. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 357899999999998732 22 3446999999999888776665 3345666776665 433 889888
Q ss_pred e----ch--hhhh------cCC-------hhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 144 S----IA--VLHH------LST-------ESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 144 ~----~~--vl~h------~~~-------~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
. ++ ++.- ..+ .....++|......+++||+|+-++-+..-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 5 22 1110 000 011457888889999999999988766543
No 265
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.99 E-value=0.035 Score=44.58 Aligned_cols=41 Identities=10% Similarity=0.288 Sum_probs=30.8
Q ss_pred CccEEEechhhhhcC---ChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 138 FGDAAISIAVLHHLS---TESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 138 ~fD~Vi~~~vl~h~~---~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.||+|+|..|.-|+. .++....+++.+++.|+|||.|++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999988754432 23447889999999999999999884
No 266
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.90 E-value=0.13 Score=49.07 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=50.7
Q ss_pred HHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-----CC
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----YR 135 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~-----~~ 135 (353)
.+...+ .+.++..++|.=||.|..+. ..+.+.|+|+|.++.+++.++++ ++.++++++.++. ..
T Consensus 11 Evl~~L-~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 11 EVVEGL-NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHHHhc-CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcC
Confidence 334444 24577899999999999753 23458999999999999999875 3556666655432 12
Q ss_pred CCCccEEEech
Q 018606 136 SDFGDAAISIA 146 (353)
Q Consensus 136 ~~~fD~Vi~~~ 146 (353)
...+|.|+...
T Consensus 90 ~~~vDgIl~DL 100 (305)
T TIGR00006 90 VTKIDGILVDL 100 (305)
T ss_pred CCcccEEEEec
Confidence 24566666533
No 267
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.86 E-value=0.11 Score=49.43 Aligned_cols=82 Identities=20% Similarity=0.145 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCC----CCEEEEECCccccc---cc-cCCCcEEEEEeCCHHHHHHHHHc---C------CeEEEeeCCC-
Q 018606 70 PKVATFLNSLPS----GSLVLDAGCGNGKY---LG-LNPDCFFVGCDISPSLIKICVDR---G------HEVLVADAVN- 131 (353)
Q Consensus 70 ~~~~~~l~~l~~----~~~VLDvGCG~G~~---~~-~~~~~~v~gvD~S~~~l~~a~~~---~------i~~~~~D~~~- 131 (353)
..+..+|....+ .-++||||+|..-. +. ...+.+++|+|+++..++.|++. + |+++...-..
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~ 166 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDN 166 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-S
T ss_pred HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccc
Confidence 345566654332 45899999998643 22 24578999999999999999986 3 5665442211
Q ss_pred ----CCCCCCCccEEEechhhhhc
Q 018606 132 ----LPYRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 132 ----l~~~~~~fD~Vi~~~vl~h~ 151 (353)
+....+.||+.+|.--++--
T Consensus 167 i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 167 IFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp STTTSTT--S-EEEEEE-----SS
T ss_pred cchhhhcccceeeEEecCCccccC
Confidence 22234689999997766543
No 268
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.80 E-value=0.28 Score=48.09 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=65.4
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHc-CCeEEEeeCCC-C-----CC-CCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVN-L-----PY-RSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~-l-----~~-~~~~fD~Vi 143 (353)
..+.++.+||.+|||. |..+. ...+. .++++|.++..++.+++. +..++...-.. + .+ ....+|+|+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 3567889999999987 66542 23454 699999999999999987 55443221111 1 11 223689988
Q ss_pred echhh-----------hhc----CChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 144 SIAVL-----------HHL----STESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 144 ~~~vl-----------~h~----~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
....- .|. .+ ....+.++.+.|+++|++++..
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETD---RPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ECCCCcccccccccccccccccccC---chHHHHHHHHHhccCCEEEEEc
Confidence 85321 111 11 2457899999999999998874
No 269
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.65 E-value=0.42 Score=45.23 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=64.2
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------CCCCCCccEEEechh
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISIAV 147 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------~~~~~~fD~Vi~~~v 147 (353)
.+.++.+||..|+|. |.++. ...+..|++++.++...+.+++.+++.+..+-... ......+|+++....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g 241 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG 241 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC
Confidence 467788999888763 55432 25577899999999999999877765443322111 123456898876421
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
. ...+.++.+.|+++|+++...+.
T Consensus 242 -----~----~~~~~~~~~~l~~~G~~v~~g~~ 265 (338)
T cd08254 242 -----T----QPTFEDAQKAVKPGGRIVVVGLG 265 (338)
T ss_pred -----C----HHHHHHHHHHhhcCCEEEEECCC
Confidence 1 24678889999999999887543
No 270
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=0.48 Score=43.68 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=70.5
Q ss_pred HHHhCCCCCCEEEEECCccccccc--------cCCCcEEEEEeCCHHHHHHHHHc------CCe--EEEeeCCC----CC
Q 018606 74 TFLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR------GHE--VLVADAVN----LP 133 (353)
Q Consensus 74 ~~l~~l~~~~~VLDvGCG~G~~~~--------~~~~~~v~gvD~S~~~l~~a~~~------~i~--~~~~D~~~----l~ 133 (353)
.-+.....+..++|+|+|+..-++ ...-.+++.+|+|...++...+. +++ -+.+|.+. +|
T Consensus 71 ~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~ 150 (321)
T COG4301 71 AEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP 150 (321)
T ss_pred HHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc
Confidence 334445557899999999986322 12335999999999988654332 333 34555542 33
Q ss_pred CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 134 ~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
..++-=.++...+|..+.+.+ ...+|.++..+|+||-.+++-+=
T Consensus 151 -~~~~Rl~~flGStlGN~tp~e-~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 151 -RGGRRLFVFLGSTLGNLTPGE-CAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred -CCCeEEEEEecccccCCChHH-HHHHHHHHHhcCCCcceEEEecc
Confidence 223333455566888887666 68899999999999999998863
No 271
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.45 E-value=0.11 Score=52.47 Aligned_cols=94 Identities=12% Similarity=0.248 Sum_probs=73.7
Q ss_pred CEEEEECCccccccc--------cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606 83 SLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 147 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~--------~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~v 147 (353)
.+|+=+|+|-|-+.. .....++++++-+++++-..+.+ .++++..|+..++.+....|++++ ..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-EL 447 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-EL 447 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-Hh
Confidence 367889999998742 25578999999999988776655 578999999999865678898876 34
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
|..+.+.|.-.++|.-+.+.|||+|+.+=.
T Consensus 448 LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 555666665678999999999999886543
No 272
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.41 E-value=0.39 Score=46.54 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=56.0
Q ss_pred CCCEEEEECCccccccc--------------------cCCCcEEEEEeCCHHHH-----------HHHHHcCCeE---EE
Q 018606 81 SGSLVLDAGCGNGKYLG--------------------LNPDCFFVGCDISPSLI-----------KICVDRGHEV---LV 126 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~--------------------~~~~~~v~gvD~S~~~l-----------~~a~~~~i~~---~~ 126 (353)
..-+|+|+||..|..+- ..|...|+--|+-.+=- +.....+--| +-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 33599999999998531 01336888888743211 1111112222 23
Q ss_pred eeCCCCCCCCCCccEEEechhhhhcCCh------------------------------------hHHHHHHHHHHhcccc
Q 018606 127 ADAVNLPYRSDFGDAAISIAVLHHLSTE------------------------------------SRRKKAIEELVRVVKK 170 (353)
Q Consensus 127 ~D~~~l~~~~~~fD~Vi~~~vl~h~~~~------------------------------------e~~~~~l~el~rvLkp 170 (353)
+.+-.--+|+++.|++++..+|||++.. .+...+|+-=.+-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 3444434789999999999999998631 0123344444566789
Q ss_pred CcEEEEEEcCCCc
Q 018606 171 GSLVLITVWAVEQ 183 (353)
Q Consensus 171 gG~lli~~~~~~~ 183 (353)
||++++...+...
T Consensus 176 GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 176 GGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEE-ST
T ss_pred CcEEEEEEeeccc
Confidence 9999999987665
No 273
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.16 E-value=0.027 Score=45.07 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=21.5
Q ss_pred CCCEEEEECCccccccc--cCCCcEEEEEeC
Q 018606 81 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDI 109 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~ 109 (353)
+....+|||||||.+.- ..-|..=.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 34579999999999753 355666788885
No 274
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.99 E-value=0.08 Score=45.50 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=38.6
Q ss_pred CCCccEEEechhhhhcC--------ChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 136 SDFGDAAISIAVLHHLS--------TESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 136 ~~~fD~Vi~~~vl~h~~--------~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
.++||++.|..+|+|+. ++..-.+.+.++.++|||||.+++.++-..+
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 46899999999999863 1222467899999999999999999987654
No 275
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.86 E-value=0.39 Score=46.18 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=60.2
Q ss_pred CCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe----eCCCCCCCCCCccEEEechhhh
Q 018606 79 LPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVA----DAVNLPYRSDFGDAAISIAVLH 149 (353)
Q Consensus 79 l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~----D~~~l~~~~~~fD~Vi~~~vl~ 149 (353)
..++.+||=+|||. |.++. ...+. .|+++|.++.-++.+++.+.+.+.. ++..+....+.+|+|+....
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G-- 244 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG-- 244 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC--
Confidence 34688899899864 33321 24566 7999999999999999887654321 11111111234888877532
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
. ...+....+.|++||++++.-.
T Consensus 245 ---~----~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---H----PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---C----HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 2457778889999999987753
No 276
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=92.73 E-value=1.1 Score=45.85 Aligned_cols=134 Identities=17% Similarity=0.237 Sum_probs=83.6
Q ss_pred HHHHHHHHhhccccccc------cccChHHHHHHHhC---CCCCCEEEEECCcccccccc-------CC-CcEEEEEeCC
Q 018606 48 KYVHRVYDAIAPHFSST------RFAKWPKVATFLNS---LPSGSLVLDAGCGNGKYLGL-------NP-DCFFVGCDIS 110 (353)
Q Consensus 48 ~~v~~~yd~~a~~y~~~------~~~~~~~~~~~l~~---l~~~~~VLDvGCG~G~~~~~-------~~-~~~v~gvD~S 110 (353)
+.+..+|+.+...|... .+-..+.+..++.. ..+..+|+|..||+|.++.. .. ...++|.|+.
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 34555666655555432 23334445444442 24667999999999987531 11 3789999999
Q ss_pred HHHHHHHHHc----CCe----EEEeeCCCCCC-----CCCCccEEEechhhh---hc------------------CCh-h
Q 018606 111 PSLIKICVDR----GHE----VLVADAVNLPY-----RSDFGDAAISIAVLH---HL------------------STE-S 155 (353)
Q Consensus 111 ~~~l~~a~~~----~i~----~~~~D~~~l~~-----~~~~fD~Vi~~~vl~---h~------------------~~~-e 155 (353)
......|+-+ ++. ...+|-..-|. ..+.||+|++.--+. +. +.. .
T Consensus 224 ~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (489)
T COG0286 224 DTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNS 303 (489)
T ss_pred HHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCc
Confidence 9999999886 443 34444444342 236799988843221 11 111 1
Q ss_pred HHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 156 RRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 156 ~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
.-..+++.+...|+|||++.|..+..
T Consensus 304 ~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 304 ADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred hHHHHHHHHHHhcCCCceEEEEecCC
Confidence 02678999999999999877776553
No 277
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.66 E-value=0.5 Score=42.71 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=64.8
Q ss_pred HHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEE
Q 018606 75 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA 142 (353)
Q Consensus 75 ~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~V 142 (353)
....++.+..+.||||-.|.+.. ..+...+++.|+++..++.|.+. .+++..+|....--.+..+|+|
T Consensus 10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~i 89 (226)
T COG2384 10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVI 89 (226)
T ss_pred HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEE
Confidence 33344566679999999998643 35667999999999999999876 3567777774422334478888
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
+..++=.-+ ....|.+-.+.|+.==++++.
T Consensus 90 vIAGMGG~l-----I~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 90 VIAGMGGTL-----IREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred EEeCCcHHH-----HHHHHHHhhhhhcCcceEEEC
Confidence 776642211 456677776666533344443
No 278
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.30 E-value=0.37 Score=43.44 Aligned_cols=93 Identities=19% Similarity=0.275 Sum_probs=55.0
Q ss_pred CEEEEECCccccccc---c-CCC--cEEEEEeCCHHHHHHHHHc------------------------------------
Q 018606 83 SLVLDAGCGNGKYLG---L-NPD--CFFVGCDISPSLIKICVDR------------------------------------ 120 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~---~-~~~--~~v~gvD~S~~~l~~a~~~------------------------------------ 120 (353)
-++.|-+||.|.++. + .+. ..|+|.|+++.++++|+++
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~ 132 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD 132 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 589999999999763 1 222 4899999999999999864
Q ss_pred -------------CCeEEEeeCCC------CCCCCCCccEEEechhhhhcCC------hhHHHHHHHHHHhccccCcEEE
Q 018606 121 -------------GHEVLVADAVN------LPYRSDFGDAAISIAVLHHLST------ESRRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 121 -------------~i~~~~~D~~~------l~~~~~~fD~Vi~~~vl~h~~~------~e~~~~~l~el~rvLkpgG~ll 175 (353)
...+.+.|+.+ ++. ....|+|+.----.++.+ .+-...+|..+..+|-.++++.
T Consensus 133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~-~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDA-GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHT-T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred HHHHHHHhcCCCCchhheeecccCCchhhhhcc-CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence 12467778776 222 233599988433222222 1225679999999995555555
Q ss_pred E
Q 018606 176 I 176 (353)
Q Consensus 176 i 176 (353)
+
T Consensus 212 v 212 (246)
T PF11599_consen 212 V 212 (246)
T ss_dssp E
T ss_pred E
Confidence 5
No 279
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=0.87 Score=38.73 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=65.4
Q ss_pred HHHHHHHhCCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCC
Q 018606 70 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDF 138 (353)
Q Consensus 70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~ 138 (353)
..+..++.. .+..+.+|+|+|.|+..- ..-+ ..-+|+++++-++.+++-+ ...|..-|+.+..+.+-
T Consensus 62 ~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy- 139 (199)
T KOG4058|consen 62 ENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY- 139 (199)
T ss_pred HHHHHHccC-CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc-
Confidence 344444444 344589999999999743 2223 4779999999999888765 46788888888777554
Q ss_pred ccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
..++.+++-.-+++ +-..+..-|..|..++-.-|..
T Consensus 140 -~~vviFgaes~m~d------Le~KL~~E~p~nt~vvacRFPL 175 (199)
T KOG4058|consen 140 -RNVVIFGAESVMPD------LEDKLRTELPANTRVVACRFPL 175 (199)
T ss_pred -ceEEEeehHHHHhh------hHHHHHhhCcCCCeEEEEecCC
Confidence 34444444333443 2334444566777777665543
No 280
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=91.84 E-value=0.37 Score=43.31 Aligned_cols=104 Identities=16% Similarity=0.228 Sum_probs=53.4
Q ss_pred HHHhCCCCCCEEEEECCcccccc-------cc-CCCcEEEEEeCCHHHHH-HHHH-----cCCeEEEeeCCCCC----C-
Q 018606 74 TFLNSLPSGSLVLDAGCGNGKYL-------GL-NPDCFFVGCDISPSLIK-ICVD-----RGHEVLVADAVNLP----Y- 134 (353)
Q Consensus 74 ~~l~~l~~~~~VLDvGCG~G~~~-------~~-~~~~~v~gvD~S~~~l~-~a~~-----~~i~~~~~D~~~l~----~- 134 (353)
.++-.++| ..|+|+|.-.|.-+ .. ...++|+|+|+...... .+.+ .+++++++|..+.. .
T Consensus 26 eli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 26 ELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp HHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSG
T ss_pred HHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHH
Confidence 34444555 59999999887733 22 47789999999543321 1222 37999999987632 1
Q ss_pred ---CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 135 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 135 ---~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
......+||.-+ +|.... ..+.|.....++++|+++++.+...+
T Consensus 105 ~~~~~~~~vlVilDs--~H~~~h--vl~eL~~y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 105 ELASPPHPVLVILDS--SHTHEH--VLAELEAYAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp SS----SSEEEEESS------SS--HHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred HhhccCCceEEEECC--CccHHH--HHHHHHHhCccCCCCCEEEEEecccc
Confidence 112223444432 333322 56778889999999999998875543
No 281
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.70 E-value=1.5 Score=42.69 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=65.4
Q ss_pred CCCCEEEEECCcc-ccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCC------CCCCC-CCccEEEech
Q 018606 80 PSGSLVLDAGCGN-GKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVN------LPYRS-DFGDAAISIA 146 (353)
Q Consensus 80 ~~~~~VLDvGCG~-G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~------l~~~~-~~fD~Vi~~~ 146 (353)
.++.+|+=+|||+ |.++. ......|+++|+++.-++.|++. +.+.+...... +.... ..+|+++-..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 4455999999998 54432 24446999999999999999984 44444332221 01112 3689988765
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
. . ..++..+.++++|||.+.+.-.....
T Consensus 247 G-----~----~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 247 G-----S----PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred C-----C----HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 5 2 34788999999999999988665443
No 282
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.32 E-value=1.1 Score=43.67 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=66.8
Q ss_pred CCCCCCEEEEECCcccccc----cc--CC--CcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---------
Q 018606 78 SLPSGSLVLDAGCGNGKYL----GL--NP--DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--------- 133 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~----~~--~~--~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--------- 133 (353)
.+.||.+|||+++.+|.=+ .. .. ...|++-|.+..-+...... ++.+...|+...|
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 6789999999999999732 21 11 35899999988755444332 2333334443333
Q ss_pred CCCCCccEEEec------hhhhhcCCh--------------hHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 134 YRSDFGDAAISI------AVLHHLSTE--------------SRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 134 ~~~~~fD~Vi~~------~vl~h~~~~--------------e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
.....||-|++- +++.+..+. .....+|.+-.++||+||+++-++-+...
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 223468888871 122222211 11357889999999999999999876554
No 283
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.22 E-value=0.72 Score=45.95 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=65.5
Q ss_pred cChHHHHHHHhCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEE
Q 018606 67 AKWPKVATFLNSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAA 142 (353)
Q Consensus 67 ~~~~~~~~~l~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~V 142 (353)
..|..+.+......+|.+|+=+|||+ |..+. ...|+.|+++|+++.-+..|+..+...... ... . ..+|+|
T Consensus 187 s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~--~e~-v--~~aDVV 261 (413)
T cd00401 187 SLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTM--EEA-V--KEGDIF 261 (413)
T ss_pred hhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccH--HHH-H--cCCCEE
Confidence 44555555555556899999999997 44332 255679999999998888888877654422 111 1 246999
Q ss_pred EechhhhhcCChhHHHHHHHH-HHhccccCcEEEEEE
Q 018606 143 ISIAVLHHLSTESRRKKAIEE-LVRVVKKGSLVLITV 178 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~e-l~rvLkpgG~lli~~ 178 (353)
+.... . ..++.. ..+.+|+||+++..-
T Consensus 262 I~atG-----~----~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTG-----N----KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCC-----C----HHHHHHHHHhcCCCCcEEEEeC
Confidence 87532 2 234444 588999999987664
No 284
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=90.95 E-value=0.8 Score=43.25 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCCCEEEEECCcccccccc---CCC-cEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC--CCCCCccE
Q 018606 79 LPSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP--YRSDFGDA 141 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~---~~~-~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~--~~~~~fD~ 141 (353)
++....+|=||-|.|.+++. .+. ..++-+|+....++..++. .+.+..+|...+- ...+.||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 45567999999999999863 232 3788889999888887764 4677888766532 44689999
Q ss_pred EEechhhhhcCChhH-HHHHHHHHHhccccCcEEEEEE
Q 018606 142 AISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 142 Vi~~~vl~h~~~~e~-~~~~l~el~rvLkpgG~lli~~ 178 (353)
|+.-..---.+.... .+..+.-+.+.||+||++++..
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 988432111111110 3467888999999999998875
No 285
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=90.65 E-value=0.26 Score=46.22 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=55.8
Q ss_pred CCCCEEEEECCccccc---cccCCCcEEEEEeCCHHHHHHHHHc----------------C-CeEEEe---eCCCCCCCC
Q 018606 80 PSGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVDR----------------G-HEVLVA---DAVNLPYRS 136 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~---~~~~~~~~v~gvD~S~~~l~~a~~~----------------~-i~~~~~---D~~~l~~~~ 136 (353)
-.+.+|||+|||.|.- +.......+...|.+...++.-.-- . ..+... |...+--..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 3578999999999873 2222336777788877766321110 0 111111 111111011
Q ss_pred CCccEEEechhhhhcCChhHHHHH-HHHHHhccccCcEEEEE
Q 018606 137 DFGDAAISIAVLHHLSTESRRKKA-IEELVRVVKKGSLVLIT 177 (353)
Q Consensus 137 ~~fD~Vi~~~vl~h~~~~e~~~~~-l~el~rvLkpgG~lli~ 177 (353)
..||+|.++-++.-.... ... +.....+++++|++++.
T Consensus 195 ~~ydlIlsSetiy~~~~~---~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSL---AVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCcchh---hhhHhhhhhhcCCccchhhhh
Confidence 278999999988877763 233 56667778888887665
No 286
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=90.56 E-value=1.1 Score=41.54 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=61.3
Q ss_pred CCCEEEEECCccccc---cccCCCcEEEEEeCCHHHHHHHHH--c--------CCeEEEe--eCCC---CCCCCCC-ccE
Q 018606 81 SGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVD--R--------GHEVLVA--DAVN---LPYRSDF-GDA 141 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~---~~~~~~~~v~gvD~S~~~l~~a~~--~--------~i~~~~~--D~~~---l~~~~~~-fD~ 141 (353)
....||++|+|+|.- +....+..|.-.|....+...... . +..+.+. +-.. ..+.... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 345799999999952 223567788888886654332221 1 2122222 2222 1122233 899
Q ss_pred EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
|++..++.+-.. ...++.-+...|..+|.+++...-.+
T Consensus 166 ilasDvvy~~~~---~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 166 ILASDVVYEEES---FEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEeeeeecCCc---chhHHHHHHHHHhcCCeEEEEEeccc
Confidence 999999988877 55677777888888886666654433
No 287
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.45 E-value=0.54 Score=48.03 Aligned_cols=92 Identities=22% Similarity=0.207 Sum_probs=66.2
Q ss_pred CCCEEEEECCccc-cccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-----------------------CC
Q 018606 81 SGSLVLDAGCGNG-KYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-----------------------LP 133 (353)
Q Consensus 81 ~~~~VLDvGCG~G-~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----------------------l~ 133 (353)
++.++|=+|||.= ..+. ...|+.|+++|.++.-++.+++.+.+++..|..+ ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 5689999999974 3322 2456789999999999999998887776665421 11
Q ss_pred CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606 134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 134 ~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll 175 (353)
-.-..+|+||....+..-+. +.-+.+++.+.+|||+.++
T Consensus 243 e~~~~~DIVI~TalipG~~a---P~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPA---PKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHhCCCCEEEECcccCCCCC---CeeehHHHHhhCCCCCEEE
Confidence 01246899988876655444 3457888999999998855
No 288
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.09 E-value=0.23 Score=45.11 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=65.4
Q ss_pred CEEEEECCcccccccc---------C-CCc---EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccE
Q 018606 83 SLVLDAGCGNGKYLGL---------N-PDC---FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDA 141 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~~---------~-~~~---~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~ 141 (353)
.+++|+++.+|.+.+. . .+. .++++|+-+ | |--.++.-+++|+++.. |.....|+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M---aPI~GV~qlq~DIT~~stae~Ii~hfggekAdl 118 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M---APIEGVIQLQGDITSASTAEAIIEHFGGEKADL 118 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C---CccCceEEeecccCCHhHHHHHHHHhCCCCccE
Confidence 6899999999996421 1 111 499999854 2 11127778899998742 55568899
Q ss_pred EEech-----hhhhcCC---hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 142 AISIA-----VLHHLST---ESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 142 Vi~~~-----vl~h~~~---~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
|+|-+ .||-+.. .+.+..+|.-...+|||||.|+--.|-..
T Consensus 119 VvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 119 VVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred EEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 99955 3443322 22356778888899999999987776543
No 289
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.90 E-value=1.5 Score=42.26 Aligned_cols=91 Identities=12% Similarity=-0.006 Sum_probs=60.7
Q ss_pred CCCCCEEEEECCcc-ccccc---cCCCcEEEEEeC---CHHHHHHHHHcCCeEEEeeCCCCCC----CCCCccEEEechh
Q 018606 79 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDI---SPSLIKICVDRGHEVLVADAVNLPY----RSDFGDAAISIAV 147 (353)
Q Consensus 79 l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~---S~~~l~~a~~~~i~~~~~D~~~l~~----~~~~fD~Vi~~~v 147 (353)
..++.+||=+|+|. |.++. ...++.|++++. ++.-++.+++.+.+++ +.....+ ....+|+|+....
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC
Confidence 35788999999875 43332 245678999987 6788888888877653 2221110 1245788887542
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
. ...+.+..++|++||++++.-..
T Consensus 248 -----~----~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 248 -----V----PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred -----C----HHHHHHHHHHccCCcEEEEEecC
Confidence 2 23678888999999998876543
No 290
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.00 E-value=2.3 Score=40.75 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=61.5
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~ 152 (353)
..+.+|.+||=.|+|. |.++. ...++.|++++.++.-++.+++.+.+.+.. .... ..+.+|+++.....
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~-~~~~--~~~~~d~~i~~~~~---- 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGG-AYDT--PPEPLDAAILFAPA---- 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecc-cccc--CcccceEEEECCCc----
Confidence 3567899999999864 32221 245778999999999999999987654321 1111 12357876543321
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
...+....+.|++||++++.-.
T Consensus 234 -----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -----HHHHHHHHHhhCCCcEEEEEec
Confidence 1357788899999999987754
No 291
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=88.66 E-value=0.63 Score=46.52 Aligned_cols=100 Identities=22% Similarity=0.188 Sum_probs=65.5
Q ss_pred CCEEEEECCccccccc----c--CCCcEEEEEeCCHHHHHHHHHc--C-----CeEEEe-eCC--CCCCCC-CCccEEEe
Q 018606 82 GSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--G-----HEVLVA-DAV--NLPYRS-DFGDAAIS 144 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~----~--~~~~~v~gvD~S~~~l~~a~~~--~-----i~~~~~-D~~--~l~~~~-~~fD~Vi~ 144 (353)
...++|+|.|.|.-.. . ...-.++.||.|..|+...... + -.++.. -+. .+|... ..||+||+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 3578899988776422 1 2234889999999999887654 1 111111 111 245333 45999999
Q ss_pred chhhhhcCChhHHHHHHHHHHhcc-ccCcEEEEEEcCCC
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVV-KKGSLVLITVWAVE 182 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvL-kpgG~lli~~~~~~ 182 (353)
.+.++++.+.+.+.....++.+.. ++||.+++. +...
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI-e~g~ 318 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII-EKGT 318 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEE-ecCC
Confidence 999999998877777777777765 566665555 4433
No 292
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=88.35 E-value=0.4 Score=43.95 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=41.3
Q ss_pred CCCCC--CEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCC-CCCCC
Q 018606 78 SLPSG--SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVN-LPYRS 136 (353)
Q Consensus 78 ~l~~~--~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~-l~~~~ 136 (353)
.+.++ .+|||.=+|-|.-+. ...|++|++++.|+-+....+.- +++++.+|... +..++
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~ 149 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPD 149 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHS
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcC
Confidence 44555 499999999998432 23478999999999765443321 57899999877 55667
Q ss_pred CCccEEEechhhhh
Q 018606 137 DFGDAAISIAVLHH 150 (353)
Q Consensus 137 ~~fD~Vi~~~vl~h 150 (353)
.+||+|..--.+.+
T Consensus 150 ~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 150 NSFDVVYFDPMFPE 163 (234)
T ss_dssp S--SEEEE--S---
T ss_pred CCCCEEEECCCCCC
Confidence 89999999777665
No 293
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=88.28 E-value=0.62 Score=38.47 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=55.4
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCCccEEEe
Q 018606 69 WPKVATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAIS 144 (353)
Q Consensus 69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~-~~~fD~Vi~ 144 (353)
|..+..++.......+|+|||-|.=.-.. ...|+.|+++|+.+. .+. .++.++.-|+.+-.+. -...|+|.+
T Consensus 1 ~~~~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 1 MVDFAEYIARLNNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp HHHHHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CchHHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-cCcceeeecccCCCHHHhcCCcEEEE
Confidence 34556666644555699999887633221 245689999999987 333 5899999999873311 134688888
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 184 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~ 184 (353)
+- +++| +...+.++.+. -|.-++|.....+..
T Consensus 77 iR-----PP~E-l~~~il~lA~~--v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 77 IR-----PPPE-LQPPILELAKK--VGADLIIRPLGGESP 108 (127)
T ss_dssp ES-------TT-SHHHHHHHHHH--HT-EEEEE-BTTB--
T ss_pred eC-----CChH-HhHHHHHHHHH--hCCCEEEECCCCCCC
Confidence 64 2223 45566666664 467788888887764
No 294
>PRK10742 putative methyltransferase; Provisional
Probab=88.14 E-value=1.3 Score=40.95 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=50.1
Q ss_pred CCCCCC--EEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCCC-CCCC
Q 018606 78 SLPSGS--LVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVNL-PYRS 136 (353)
Q Consensus 78 ~l~~~~--~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~l-~~~~ 136 (353)
.+++|. +|||+=+|.|.... ...|+.|+++|.++.+....++. +++++.+|.... .-..
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 456766 99999999999643 35688999999999876554432 245566665542 2122
Q ss_pred CCccEEEechhhhh
Q 018606 137 DFGDAAISIAVLHH 150 (353)
Q Consensus 137 ~~fD~Vi~~~vl~h 150 (353)
..||+|+.--.+.|
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 37899998666555
No 295
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=88.00 E-value=0.86 Score=43.59 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=46.0
Q ss_pred HHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-----C
Q 018606 70 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----Y 134 (353)
Q Consensus 70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~-----~ 134 (353)
..+...|. ..++..++|.=-|.|.++. ..+++.++|+|..+.+++.|+++ ++.++.+++.++. .
T Consensus 10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 45555664 5667799999889888653 35669999999999999999876 4566666665542 2
Q ss_pred -CCCCccEEEe
Q 018606 135 -RSDFGDAAIS 144 (353)
Q Consensus 135 -~~~~fD~Vi~ 144 (353)
.-..+|.|+.
T Consensus 89 ~~~~~~dgiL~ 99 (310)
T PF01795_consen 89 NGINKVDGILF 99 (310)
T ss_dssp TTTS-EEEEEE
T ss_pred cCCCccCEEEE
Confidence 2345666665
No 296
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=87.21 E-value=3.3 Score=37.35 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=60.6
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~~~~fD~Vi~~~ 146 (353)
.+.++.+||-.|+|. |..+. ...+..|++++.++...+.+++.+..... +..... ...+.+|+++...
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVI-DYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceec-cCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 347789999999986 44332 24568999999999888888766533221 111111 1235689988653
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
. . ...+..+.+.|+++|.++.....
T Consensus 210 ~-----~----~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 210 G-----G----PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred C-----C----HHHHHHHHHhcccCCEEEEEccC
Confidence 2 1 13566778889999998876543
No 297
>PRK13699 putative methylase; Provisional
Probab=87.07 E-value=0.77 Score=41.92 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=35.5
Q ss_pred eEEEeeCCCC--CCCCCCccEEEech--hh--hh-----c---CChhHHHHHHHHHHhccccCcEEEEE
Q 018606 123 EVLVADAVNL--PYRSDFGDAAISIA--VL--HH-----L---STESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 123 ~~~~~D~~~l--~~~~~~fD~Vi~~~--vl--~h-----~---~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
+++.+|+.++ .++++++|+|+..- .+ .. + ...+-...++.++.|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4667777664 46788888888841 11 00 0 00121357899999999999988763
No 298
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=86.49 E-value=9.4 Score=37.56 Aligned_cols=95 Identities=22% Similarity=0.222 Sum_probs=55.2
Q ss_pred CCCEEEEECCccccc----cc---c----CCCcEEEEEeC----CHHHHHHHHH--------cCCeEEEe-----eCCC-
Q 018606 81 SGSLVLDAGCGNGKY----LG---L----NPDCFFVGCDI----SPSLIKICVD--------RGHEVLVA-----DAVN- 131 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~----~~---~----~~~~~v~gvD~----S~~~l~~a~~--------~~i~~~~~-----D~~~- 131 (353)
..-.|+|+|.|.|.- +. . .|..+|||++. +..-++.+.+ .|+.|.-. +...
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 446999999999972 11 1 35569999999 6655544444 36644222 2222
Q ss_pred ----CCCCCCCccEEEechhhhhcCChh----HHHHHHHHHHhccccCcEEE
Q 018606 132 ----LPYRSDFGDAAISIAVLHHLSTES----RRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 132 ----l~~~~~~fD~Vi~~~vl~h~~~~e----~~~~~l~el~rvLkpgG~ll 175 (353)
+...++..=+|-+...|||+.+.. .+...+-...|.|+|.-.++
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~ 241 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVL 241 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEE
Confidence 223344444555667789987321 12334455667889984433
No 299
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=86.28 E-value=2.4 Score=40.79 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=58.3
Q ss_pred CCCCCEEEEECCcc-cccc----cc-CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606 79 LPSGSLVLDAGCGN-GKYL----GL-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 79 l~~~~~VLDvGCG~-G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~ 152 (353)
+.+|.+||=+|||. |.++ .. ..+..|+++|.++.-++.+++.+...... .+. ....+|+|+-... .-.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~---~~~-~~~g~d~viD~~G--~~~ 234 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLID---DIP-EDLAVDHAFECVG--GRG 234 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehh---hhh-hccCCcEEEECCC--CCc
Confidence 46789999999975 4332 12 23468999999998888887643322111 111 1124788886432 100
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
. ...+....++|++||++++.-.
T Consensus 235 ~----~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 235 S----QSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred c----HHHHHHHHHhCcCCcEEEEEee
Confidence 1 3468888899999999987754
No 300
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.76 E-value=2.9 Score=38.33 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=54.4
Q ss_pred cChHHHHHHHhC----C-CCCCEEEEECCccccc---cc-cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEe-
Q 018606 67 AKWPKVATFLNS----L-PSGSLVLDAGCGNGKY---LG-LNPDCFFVGCDISPSLIKICVDR---------GHEVLVA- 127 (353)
Q Consensus 67 ~~~~~~~~~l~~----l-~~~~~VLDvGCG~G~~---~~-~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~- 127 (353)
.+...+.++|.. + .++.++||||.|.--. +. ...+.+.+|.|+++..++.|+.. .+++...
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 334556666652 2 2556899999886432 22 36678999999999999998865 2444332
Q ss_pred eCCC----CCCCCCCccEEEechhhhh
Q 018606 128 DAVN----LPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 128 D~~~----l~~~~~~fD~Vi~~~vl~h 150 (353)
|-.. +--..+.||+++|+--+|-
T Consensus 139 ~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 139 DSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred CccccccccccccceeeeEecCCCcch
Confidence 2111 1123678999999887764
No 301
>PRK11524 putative methyltransferase; Provisional
Probab=85.64 E-value=0.65 Score=43.83 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=36.8
Q ss_pred CeEEEeeCCCC--CCCCCCccEEEech--hh--h--hc----CCh---hHHHHHHHHHHhccccCcEEEEEE
Q 018606 122 HEVLVADAVNL--PYRSDFGDAAISIA--VL--H--HL----STE---SRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 122 i~~~~~D~~~l--~~~~~~fD~Vi~~~--vl--~--h~----~~~---e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
..++++|+... .+++++||+|++.- .+ . .. ... +-....+.++.|+|||||.+++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 45677777763 35677889888832 11 0 00 000 113578999999999999998863
No 302
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.55 E-value=4.2 Score=39.23 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=60.5
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi 143 (353)
..+.++.+||=.|||. |.++. ...+. .|+++|.++.-++.+++.+.+.+. +..... .....+|+|+
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTV-NSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE-cCCCcCHHHHHHHHhCCCCCCEEE
Confidence 3567889999999864 33321 24566 599999999999999887764322 111110 1123578887
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.... . ...+....+.|++||++++.-.
T Consensus 251 d~~g-----~----~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 251 DAVG-----R----PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ECCC-----C----HHHHHHHHHHhccCCEEEEECC
Confidence 6432 2 2356677889999999987754
No 303
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=85.31 E-value=1.8 Score=42.14 Aligned_cols=91 Identities=24% Similarity=0.222 Sum_probs=64.4
Q ss_pred CCEEEEECCcccc----ccccCCCcEEEEEeCCHHHHHHHHHc---C----CeEEEeeCCCCCCC-CCCccEEEechhhh
Q 018606 82 GSLVLDAGCGNGK----YLGLNPDCFFVGCDISPSLIKICVDR---G----HEVLVADAVNLPYR-SDFGDAAISIAVLH 149 (353)
Q Consensus 82 ~~~VLDvGCG~G~----~~~~~~~~~v~gvD~S~~~l~~a~~~---~----i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~ 149 (353)
..+|||.=+|+|. ++...+...++.-|+|+...+.++++ | ..++..|+..+-.. ...||+|=. .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 5689999999997 33334444999999999999999887 2 34455565543321 256777632 1
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
=+.+ +..++....+.++.||.+.++.-
T Consensus 129 PFGS---PaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 129 PFGS---PAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCC---CchHHHHHHHHhhcCCEEEEEec
Confidence 1233 56788999999999999999853
No 304
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=85.31 E-value=1.2 Score=43.78 Aligned_cols=91 Identities=25% Similarity=0.223 Sum_probs=62.3
Q ss_pred CCCEEEEECCcccc----ccccCCC-cEEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCC-CCCCCccEEEec
Q 018606 81 SGSLVLDAGCGNGK----YLGLNPD-CFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP-YRSDFGDAAISI 145 (353)
Q Consensus 81 ~~~~VLDvGCG~G~----~~~~~~~-~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~l~-~~~~~fD~Vi~~ 145 (353)
.+-+|||.=+|+|. |+...++ ..|+.-|+|+.+++..+++ + +++...|+..+- .....||+|=.-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 34689999999997 3333233 5999999999999998887 1 456667776542 356789998542
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
- +.+ +..+|....+.++.||.|.++.
T Consensus 129 P----fGS---p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 P----FGS---PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----SS-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred C----CCC---ccHhHHHHHHHhhcCCEEEEec
Confidence 1 233 5789999999999999999995
No 305
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.11 E-value=1.3 Score=43.67 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=51.4
Q ss_pred CCeEEEeeCCCCC--CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 121 GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 121 ~i~~~~~D~~~l~--~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
+++++.+++.+.. .+++++|.++....+.++++.. ..+.++++.+.++|||++++-.....
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~-~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQ-LNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHH-HHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 5778888877642 5689999999999999998755 78999999999999999998876644
No 306
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.95 E-value=5 Score=37.87 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=61.6
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCCccEEEec
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISI 145 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~------~~~~~fD~Vi~~ 145 (353)
..+.++.+||-+|+|. |..+. ...+.. +++++.++...+.+++.++..+.. ..... .....+|+++..
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVD-PSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEec-CCCCCHHHHHHhcCCCCcEEEEC
Confidence 4567888999998653 33322 245665 899999999999887777653222 11111 123568999864
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.. . ...+.++.+.|+++|+++...+.
T Consensus 234 ~~-----~----~~~~~~~~~~l~~~G~~v~~g~~ 259 (334)
T cd08234 234 TG-----V----PKTLEQAIEYARRGGTVLVFGVY 259 (334)
T ss_pred CC-----C----hHHHHHHHHHHhcCCEEEEEecC
Confidence 21 1 24677888999999998876543
No 307
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.88 E-value=1.1 Score=39.73 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHH
Q 018606 79 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD 119 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~ 119 (353)
-.+|..|||.=||+|..+. ...+-+.+|+|+++..++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 4689999999999999653 3666789999999999999874
No 308
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.76 E-value=4 Score=39.67 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=59.8
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe-eCCCC-----CCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVA-DAVNL-----PYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l-----~~~~~~fD~Vi~~~ 146 (353)
.+.++.+||=.|+|. |.++. ...++ .|+++|.++.-++.+++.+.+.... .-..+ ....+.+|+|+...
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 467888888899864 33321 24566 6999999999999998877643321 11110 01123578887642
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
. . ...+....+.|+++|++++.-.
T Consensus 268 G-----~----~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 268 G-----S----VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred C-----C----hHHHHHHHHHHhcCCEEEEEcc
Confidence 1 1 2456777889999999887643
No 309
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=84.59 E-value=6.2 Score=37.23 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=60.4
Q ss_pred CCCCCCEEEEECCc-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCC-CCC-CCCCCccEEEechhhhhc
Q 018606 78 SLPSGSLVLDAGCG-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLP-YRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 78 ~l~~~~~VLDvGCG-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~-~l~-~~~~~fD~Vi~~~vl~h~ 151 (353)
.+.++.+||-+||| .|..+. ...+..+++++.+...++.+++.+.+.+..+.. ... -..+.+|+++...
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~----- 233 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV----- 233 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC-----
Confidence 56778889999987 454432 255779999999999998887665433322111 110 0123588887642
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 152 STESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 152 ~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.. ...+..+.+.|+++|.++....
T Consensus 234 ~~----~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 234 VS----GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred Cc----HHHHHHHHHhcccCCEEEEECC
Confidence 11 2457778899999999887753
No 310
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=84.42 E-value=8 Score=34.49 Aligned_cols=108 Identities=13% Similarity=0.196 Sum_probs=71.9
Q ss_pred HHHHHhCCCCCCEEEEECCccccccc--------cCCCcEEEEEeCCHHHHHHHHH--cCCeEEEeeCCCCC-------C
Q 018606 72 VATFLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVD--RGHEVLVADAVNLP-------Y 134 (353)
Q Consensus 72 ~~~~l~~l~~~~~VLDvGCG~G~~~~--------~~~~~~v~gvD~S~~~l~~a~~--~~i~~~~~D~~~l~-------~ 134 (353)
...++-.++| +.|+++|.-.|.-+. .....+|+++|++-.-++-+.. .++.|+.++-.... .
T Consensus 61 yQellw~~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 61 YQELLWELQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred HHHHHHhcCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHH
Confidence 3444545555 589999998887432 1234799999998776544333 38999999877632 2
Q ss_pred CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 135 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 135 ~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
..+.--+.++..+-||... ..+.|+-+.++|..|-++++.+-..+.
T Consensus 140 ~~~y~kIfvilDsdHs~~h---vLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 140 KNEYPKIFVILDSDHSMEH---VLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred hcCCCcEEEEecCCchHHH---HHHHHHHhhhHhhcCceEEEecccccC
Confidence 2233345555556666654 567788888999999998888766554
No 311
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=84.39 E-value=1.4 Score=42.99 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=32.5
Q ss_pred CCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHH
Q 018606 80 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVD 119 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~ 119 (353)
.+-..|+|+|.|.|.+.+ ...+..|.|||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 445799999999999754 5778899999999887766654
No 312
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=84.39 E-value=5.5 Score=37.80 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=58.1
Q ss_pred CCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCC-----CCCCCCCCccEEEechhhhh
Q 018606 81 SGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-----NLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 81 ~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~-----~l~~~~~~fD~Vi~~~vl~h 150 (353)
++.+||-.|||. |..+. ...+. .+++++.++...+.+++.+.+.+. |.. .+......+|+++.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETV-NLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEE-cCCchhhhhhhccCCCccEEEECCCC--
Confidence 788888888874 44432 24566 799999999998888776653221 111 111122348998875321
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
...+..+.+.|+++|+++....
T Consensus 242 -------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 242 -------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -------HHHHHHHHHHHhcCCEEEEEec
Confidence 2357788899999999887643
No 313
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=84.37 E-value=3 Score=38.79 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=58.6
Q ss_pred CCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCCccEEEechhh
Q 018606 80 PSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIAVL 148 (353)
Q Consensus 80 ~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~------~~~~~fD~Vi~~~vl 148 (353)
.++.+||=+|+|+ |.++. ...+.. |+++|.++.-++.+++.+.+.... ..... .....+|+|+....
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCEEEECCC-
Confidence 4788999998864 33321 245664 999999999999999887643321 11100 11235788876421
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
. ...+..+.+.|+++|++++.-.
T Consensus 197 ----~----~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ----A----TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ----C----hHHHHHHHHHhcCCCEEEEecc
Confidence 2 3467788899999999987753
No 314
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=83.70 E-value=3.3 Score=33.38 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=53.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-------C-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhcccc
Q 018606 99 NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-------P-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK 170 (353)
Q Consensus 99 ~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-------~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkp 170 (353)
..|.+|+++|.++.-++.+++.+.+.+. |..+. . .....+|+|+-... . ...+.....+|++
T Consensus 12 ~~G~~vi~~~~~~~k~~~~~~~Ga~~~~-~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~----~~~~~~~~~~l~~ 81 (130)
T PF00107_consen 12 AMGAKVIATDRSEEKLELAKELGADHVI-DYSDDDFVEQIRELTGGRGVDVVIDCVG-----S----GDTLQEAIKLLRP 81 (130)
T ss_dssp HTTSEEEEEESSHHHHHHHHHTTESEEE-ETTTSSHHHHHHHHTTTSSEEEEEESSS-----S----HHHHHHHHHHEEE
T ss_pred HcCCEEEEEECCHHHHHHHHhhcccccc-cccccccccccccccccccceEEEEecC-----c----HHHHHHHHHHhcc
Confidence 3448999999999999999998754443 22221 1 22347899987643 2 4578889999999
Q ss_pred CcEEEEEEcCC
Q 018606 171 GSLVLITVWAV 181 (353)
Q Consensus 171 gG~lli~~~~~ 181 (353)
+|++++.-...
T Consensus 82 ~G~~v~vg~~~ 92 (130)
T PF00107_consen 82 GGRIVVVGVYG 92 (130)
T ss_dssp EEEEEEESSTS
T ss_pred CCEEEEEEccC
Confidence 99999987654
No 315
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.60 E-value=4.4 Score=37.18 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=57.9
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcC-CeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRG-HEVLVADAVNLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~-i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h 150 (353)
..+.++.+||=.|||. |..+. ...+.. |++++.+++.++.+++.+ .+-+. ...........+|+|+....
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~d~vl~~~~--- 168 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVA-ADTADEIGGRGADVVIEASG--- 168 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCcccc-ccchhhhcCCCCCEEEEccC---
Confidence 4567888898888865 43332 234566 999999999988888776 11111 01100112345888886421
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
. ...+....+.|+++|+++...
T Consensus 169 --~----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 --S----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred --C----hHHHHHHHHHhcCCcEEEEEe
Confidence 1 235677888999999987654
No 316
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.49 E-value=4.9 Score=31.81 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=54.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606 100 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 100 ~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll 175 (353)
.+..|+.+|.++..++.+++.++.++.+|..+.. ..-...+.+++.. .+.+ ....+....|-+.|...++
T Consensus 20 ~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~d~-~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 20 GGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT-----DDDE-ENLLIALLARELNPDIRII 93 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES-----SSHH-HHHHHHHHHHHHTTTSEEE
T ss_pred CCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc-----CCHH-HHHHHHHHHHHHCCCCeEE
Confidence 4459999999999999999999999999998742 2234667777643 2333 3455666677778888888
Q ss_pred EEEcCC
Q 018606 176 ITVWAV 181 (353)
Q Consensus 176 i~~~~~ 181 (353)
......
T Consensus 94 ~~~~~~ 99 (116)
T PF02254_consen 94 ARVNDP 99 (116)
T ss_dssp EEESSH
T ss_pred EEECCH
Confidence 776543
No 317
>PHA01634 hypothetical protein
Probab=83.43 E-value=5.5 Score=33.13 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=32.2
Q ss_pred CCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc
Q 018606 81 SGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~ 120 (353)
.+.+|+|||.+-|.-+. ...| -.|+++++++.+.+..++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een 70 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEV 70 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHH
Confidence 56899999999988543 2344 4999999999999998875
No 318
>PRK11524 putative methyltransferase; Provisional
Probab=82.92 E-value=2 Score=40.43 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=36.5
Q ss_pred CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606 79 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~ 120 (353)
-.+|+.|||.=||+|..+. ...+-+.+|+|+++..++.|+++
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence 3689999999999999653 46677999999999999999988
No 319
>PTZ00357 methyltransferase; Provisional
Probab=82.39 E-value=3.1 Score=43.77 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=61.7
Q ss_pred EEEEECCccccccc--------cCCCcEEEEEeCCHHHHHHHHHc--------C--------CeEEEeeCCCCCCCC---
Q 018606 84 LVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR--------G--------HEVLVADAVNLPYRS--- 136 (353)
Q Consensus 84 ~VLDvGCG~G~~~~--------~~~~~~v~gvD~S~~~l~~a~~~--------~--------i~~~~~D~~~l~~~~--- 136 (353)
.|+=+|+|-|-+.. ..-.++|++++-++..+.....+ + ++++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 68999999999752 13457999999995532222111 1 688999999875321
Q ss_pred --------CCccEEEechhhhhcCChhHHHHHHHHHHhcccc----CcE
Q 018606 137 --------DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK----GSL 173 (353)
Q Consensus 137 --------~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkp----gG~ 173 (353)
+.+|+||+- .|.-+.+.|.-.++|.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 368998872 344455656556889999999987 776
No 320
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=80.81 E-value=7.4 Score=36.98 Aligned_cols=92 Identities=16% Similarity=0.151 Sum_probs=59.3
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeCCC-----C-C-CCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVN-----L-P-YRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----l-~-~~~~~fD~Vi~~ 145 (353)
.+.++.+||=+|+|. |.++. ...++. |+++|.++.-++.+++.+.+.+.. ... + . .....+|+|+..
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~-~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVIN-SGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEc-CCcchHHHHHHHhCCCCCCEEEEC
Confidence 456788999898764 22221 245666 999999999999998877643321 111 1 0 112368988864
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.. . ...+....+.|+++|++++.-.
T Consensus 239 ~g-----~----~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 SG-----N----TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC-----C----HHHHHHHHHHhhcCCEEEEEcC
Confidence 32 2 2355677889999999987654
No 321
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=80.32 E-value=10 Score=38.79 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhcccccc------ccccChHHHHHHHhC-----CCCCCEEEEECCcccccccc--------CCCcEEEEE
Q 018606 47 KKYVHRVYDAIAPHFSS------TRFAKWPKVATFLNS-----LPSGSLVLDAGCGNGKYLGL--------NPDCFFVGC 107 (353)
Q Consensus 47 ~~~v~~~yd~~a~~y~~------~~~~~~~~~~~~l~~-----l~~~~~VLDvGCG~G~~~~~--------~~~~~v~gv 107 (353)
.+++-..|+.....+.. ..+...+.+..++.. ..|+..+.|..||+|.++.. .....++|.
T Consensus 172 ~d~lg~~ye~~~~k~a~e~~t~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gq 251 (501)
T TIGR00497 172 IDAFGDAYEFLISMYAQNAGKSGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQ 251 (501)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEE
Confidence 35677777666554422 123334455554332 22567999999999998641 112479999
Q ss_pred eCCHHHHHHHHHc----CC-----eEEEeeCCCCC-C-CCCCccEEEechh--------------------hhh----cC
Q 018606 108 DISPSLIKICVDR----GH-----EVLVADAVNLP-Y-RSDFGDAAISIAV--------------------LHH----LS 152 (353)
Q Consensus 108 D~S~~~l~~a~~~----~i-----~~~~~D~~~l~-~-~~~~fD~Vi~~~v--------------------l~h----~~ 152 (353)
+....|...|+.. ++ ....+|-..-+ + ....||+|++.-- +.| ..
T Consensus 252 e~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~ 331 (501)
T TIGR00497 252 EINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNS 331 (501)
T ss_pred eCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCc
Confidence 9999999888864 11 12223322211 1 2345777765321 112 12
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.. -..++..+..+|++||+..+....
T Consensus 332 ~~--~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 332 KA--DLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred hh--hHHHHHHHHHhcCCCCeEEEEecC
Confidence 22 246788889999999987776543
No 322
>PRK13699 putative methylase; Provisional
Probab=80.06 E-value=3.2 Score=37.83 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=39.0
Q ss_pred HHHHHHh-CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606 71 KVATFLN-SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 71 ~~~~~l~-~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~ 120 (353)
-+..++. .-.+|..|||.=||+|..+. ...+-..+|+|+++...+.+.++
T Consensus 152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Confidence 3444443 34688999999999999653 35677999999999999998877
No 323
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=79.90 E-value=3.3 Score=38.89 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=46.5
Q ss_pred EEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCC--CCCccEEEech
Q 018606 84 LVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVNLPYR--SDFGDAAISIA 146 (353)
Q Consensus 84 ~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~--~~~fD~Vi~~~ 146 (353)
+++|+-||.|.+.. ...|. .+.++|+++..++..+.+ .-.++.+|+.++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 68999999998742 23344 678899999999988877 334677888876532 35689998843
No 324
>PLN02827 Alcohol dehydrogenase-like
Probab=79.87 E-value=7.3 Score=38.08 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=59.2
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCC--C-------CCCCCccEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNL--P-------YRSDFGDAA 142 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l--~-------~~~~~fD~V 142 (353)
..+.+|.+||=.|+|. |.++. ...+. .|+++|.++.-++.|++.+.+.+. +.... + +..+.+|+|
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i-~~~~~~~~~~~~v~~~~~~g~d~v 267 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFI-NPNDLSEPIQQVIKRMTGGGADYS 267 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE-cccccchHHHHHHHHHhCCCCCEE
Confidence 3567899999999865 33321 24565 689999999999999887764332 11110 0 112257888
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccC-cEEEEEE
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 178 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~ 178 (353)
+.... . ...+....+.|++| |++++.-
T Consensus 268 id~~G-----~----~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 268 FECVG-----D----TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred EECCC-----C----hHHHHHHHHhhccCCCEEEEEC
Confidence 76432 2 23567778889998 9987653
No 325
>PLN02740 Alcohol dehydrogenase-like
Probab=79.76 E-value=10 Score=37.07 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=60.0
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCC----C-----CCCCCCccEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----L-----PYRSDFGDAA 142 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----l-----~~~~~~fD~V 142 (353)
..+.+|.+||=+|||. |.++. ...++ .|+++|.++.-++.+++.+.+.+. |... + .+..+.+|+|
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~v~~~~~~g~dvv 272 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFI-NPKDSDKPVHERIREMTGGGVDYS 272 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEE-ecccccchHHHHHHHHhCCCCCEE
Confidence 4577899999999874 33321 24566 699999999999999887764322 1111 0 0112258988
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 179 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~ 179 (353)
+.... . ...+....+.+++| |++++.-.
T Consensus 273 id~~G-----~----~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 273 FECAG-----N----VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EECCC-----C----hHHHHHHHHhhhcCCCEEEEEcc
Confidence 77532 2 24566777788887 98877643
No 326
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=79.63 E-value=9.9 Score=36.35 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=57.7
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCCcc-EEEe
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGD-AAIS 144 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~~~~fD-~Vi~ 144 (353)
.+.++.+||=.|||+ |.++. ...+.. |+++|.++.-++.+++.+.+.+. |..... .....+| +|+-
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTF-NSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEe-cCcccCHHHHHHHhcCCCCCeEEEE
Confidence 456788999999865 33321 245664 79999999999988877653321 111100 1123466 5554
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.. .. ...+.+..+.|++||++++.-.
T Consensus 236 ~~-----G~----~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 236 TA-----GV----PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CC-----CC----HHHHHHHHHHhhcCCEEEEEcc
Confidence 22 21 3467888899999999887743
No 327
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.45 E-value=4.4 Score=32.93 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=55.9
Q ss_pred CCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCCccEEEechhhhhcCChhHH
Q 018606 82 GSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRR 157 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~h~~~~e~~ 157 (353)
.++|++||-|-=.... ...|+.++++|+.+. .|+ .+++++..|+++-... -...|+|.++- +++| .
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~-~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppE-l 83 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP-EGLRFVVDDITNPNISIYEGADLIYSIR-----PPPE-L 83 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc-ccceEEEccCCCccHHHhhCccceeecC-----CCHH-H
Confidence 3499999876422211 256799999999887 344 5899999999874311 12347777742 2333 4
Q ss_pred HHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 158 KKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 158 ~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
...+-++.+.+ |..++|.....+.
T Consensus 84 ~~~ildva~aV--ga~l~I~pL~Ge~ 107 (129)
T COG1255 84 QSAILDVAKAV--GAPLYIKPLTGEP 107 (129)
T ss_pred HHHHHHHHHhh--CCCEEEEecCCCC
Confidence 55555555544 4556777665554
No 328
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=79.14 E-value=15 Score=35.39 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=60.0
Q ss_pred hCCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHH-HcCCeEEEeeCC--CC-----CCCCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICV-DRGHEVLVADAV--NL-----PYRSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~-~~~i~~~~~D~~--~l-----~~~~~~fD~Vi 143 (353)
..+.+|.+||=.|++ .|.++. ...|++|++++.++.-++.++ +.+.+.+...-. .+ ....+.+|+|+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 356789999999983 354432 256788999999998888887 456543322110 11 01123578887
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.... ...+..+.+.|++||+++++-
T Consensus 234 d~vG----------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 234 DNVG----------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred ECCC----------HHHHHHHHHHhccCCEEEEEC
Confidence 6432 135677889999999988764
No 329
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=78.92 E-value=14 Score=34.87 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=60.1
Q ss_pred hCCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-eCC-CC-----CCCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAV-NL-----PYRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~-~l-----~~~~~~fD~Vi~ 144 (353)
..+.+|.+||=.|.+ .|.++. ...|.++++++.++.-.+.+++.+.+.+.. +-. .. ....+.+|+|+.
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d 213 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFD 213 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEE
Confidence 357788999988853 344432 256779999999999999998877643321 110 11 011245888876
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.. .. ..+..+.++|+++|++++.-
T Consensus 214 ~~-----G~-----~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 214 NV-----GG-----EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CC-----CH-----HHHHHHHHHhCcCcEEEEec
Confidence 42 11 24577889999999998763
No 330
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=78.58 E-value=6.9 Score=38.95 Aligned_cols=97 Identities=22% Similarity=0.224 Sum_probs=59.1
Q ss_pred ChHHHHHHHhCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEE
Q 018606 68 KWPKVATFLNSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAI 143 (353)
Q Consensus 68 ~~~~~~~~l~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi 143 (353)
.|..+.........|.+|+=+|+|. |..+. ...+++|+++|.++.-...|...+..+.. .... . ...|+||
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~--leea-l--~~aDVVI 255 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMT--MEEA-A--KIGDIFI 255 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCC--HHHH-H--hcCCEEE
Confidence 3433333333345789999999997 44332 25577999999988665555555654432 2211 1 2458887
Q ss_pred echhhhhcCChhHHHHHHH-HHHhccccCcEEEEEE
Q 018606 144 SIAVLHHLSTESRRKKAIE-ELVRVVKKGSLVLITV 178 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~-el~rvLkpgG~lli~~ 178 (353)
+.. .. ..++. +....+|+|++++..-
T Consensus 256 taT-----G~----~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 256 TAT-----GN----KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred ECC-----CC----HHHHHHHHHhcCCCCcEEEEEC
Confidence 742 12 33444 4778899999877664
No 331
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=78.56 E-value=2.4 Score=42.21 Aligned_cols=38 Identities=18% Similarity=0.381 Sum_probs=30.4
Q ss_pred CEEEEECCcccccc--ccC-CCcEEEEEeCCHHHHHHHHHc
Q 018606 83 SLVLDAGCGNGKYL--GLN-PDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 83 ~~VLDvGCG~G~~~--~~~-~~~~v~gvD~S~~~l~~a~~~ 120 (353)
..|||||.|||.+. ... .+-.|++++.-..|.+.|++-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKI 108 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHH
Confidence 47899999999863 222 234899999999999999874
No 332
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=78.50 E-value=12 Score=36.03 Aligned_cols=93 Identities=17% Similarity=0.319 Sum_probs=58.4
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----------C-CCCCcc-
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----------Y-RSDFGD- 140 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----------~-~~~~fD- 140 (353)
..+.++.+||=.|||. |.++. ...+..++++|.++..++.+++.+.+... +....+ + ....+|
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~~~~~~~~t~~~g~d~ 240 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTL-NPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEe-cCccccHHHHHHHHHhhcccCCCCC
Confidence 3567889999999965 44432 24567899999999999999887764332 111110 0 112233
Q ss_pred ---EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 141 ---AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 141 ---~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
+|+-. ... ...+....+.|++||++++.-.
T Consensus 241 ~~d~v~d~-----~g~----~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 241 TGWKIFEC-----SGS----KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CcCEEEEC-----CCC----hHHHHHHHHHHhcCCeEEEECc
Confidence 44422 222 2456677889999999987743
No 333
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=78.17 E-value=7 Score=39.48 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=68.3
Q ss_pred CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-------CCCCCCCccE
Q 018606 80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-------LPYRSDFGDA 141 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-------l~~~~~~fD~ 141 (353)
..+..+|=||-|.|.+.. ..+...++++++.+.|++.|+.. ..++...|... ..-.+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 345677888888887643 36778999999999999999875 22333333332 1124567888
Q ss_pred EEec---hhhhhcCC--hhH-HHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 142 AISI---AVLHHLST--ESR-RKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 142 Vi~~---~vl~h~~~--~e~-~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
++.- .-.|.+.- ++. -..+|..+..+|.|-|.++|..-...+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 8761 11222221 111 346888999999999999988766554
No 334
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.51 E-value=5.7 Score=37.55 Aligned_cols=85 Identities=19% Similarity=0.108 Sum_probs=53.9
Q ss_pred CCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606 80 PSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 80 ~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
.++.++|=+|||. |.++. ...++. |+++|..+..++.|+... ++ |.... ....+|+|+-... .
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i--~~~~~--~~~g~Dvvid~~G-----~- 210 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VL--DPEKD--PRRDYRAIYDASG-----D- 210 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--cc--Chhhc--cCCCCCEEEECCC-----C-
Confidence 3567888889875 44432 244654 778899888887776431 11 11111 1345898887532 2
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEc
Q 018606 155 SRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 155 e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
...+..+.+.|+++|++++.-.
T Consensus 211 ---~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 ---PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ---HHHHHHHHHhhhcCcEEEEEee
Confidence 2457788899999999997754
No 335
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=77.42 E-value=0.97 Score=45.49 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=67.0
Q ss_pred HhCCCCCCEEEEECCccccc----cccCCCc-EEEEEeCCHHHHHHHHHc---C-----CeEEEeeCCCC----CCCCCC
Q 018606 76 LNSLPSGSLVLDAGCGNGKY----LGLNPDC-FFVGCDISPSLIKICVDR---G-----HEVLVADAVNL----PYRSDF 138 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~G~~----~~~~~~~-~v~gvD~S~~~l~~a~~~---~-----i~~~~~D~~~l----~~~~~~ 138 (353)
+....++-+|||.=|++|.- +...+++ .|++.|.+++.++..+++ | ++....|+..+ +-....
T Consensus 104 ~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 104 LKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred hhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccc
Confidence 33344567899999999974 3345554 999999999999987776 2 33445555432 233578
Q ss_pred ccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
||+|=..- +.. ...+|....+.++.||+|+++.
T Consensus 184 FDvIDLDP----yGs---~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 184 FDVIDLDP----YGS---PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cceEecCC----CCC---ccHHHHHHHHHhhcCCEEEEEe
Confidence 89884421 222 4678999999999999999985
No 336
>PLN02494 adenosylhomocysteinase
Probab=76.59 E-value=5.9 Score=40.12 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=63.8
Q ss_pred cccChHHHHHHHhCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCcc
Q 018606 65 RFAKWPKVATFLNSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGD 140 (353)
Q Consensus 65 ~~~~~~~~~~~l~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD 140 (353)
+...|..+.+....+-.|.+|+=+|+|. |..+. ...|+.|+++|.++.-...+...+..+. ++... + ...|
T Consensus 237 gqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv--~leEa-l--~~AD 311 (477)
T PLN02494 237 RHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL--TLEDV-V--SEAD 311 (477)
T ss_pred cccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec--cHHHH-H--hhCC
Confidence 3455666666655556789999999996 54332 2456799999999865555655565543 22211 1 2469
Q ss_pred EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+|+....- ..-+..+....+|+||+++..-
T Consensus 312 VVI~tTGt--------~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 312 IFVTTTGN--------KDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred EEEECCCC--------ccchHHHHHhcCCCCCEEEEcC
Confidence 88873221 1223467788999999987764
No 337
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=76.17 E-value=28 Score=32.15 Aligned_cols=95 Identities=16% Similarity=0.014 Sum_probs=52.7
Q ss_pred CCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCC-CCC-CCCCccEEEechhh
Q 018606 80 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN-LPY-RSDFGDAAISIAVL 148 (353)
Q Consensus 80 ~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~-l~~-~~~~fD~Vi~~~vl 148 (353)
-.|..||=||=+--.-+. ..+..+|+.+|+.+.+++..++. .++.+..|+.+ +|- -.+.||++++.-.
T Consensus 43 L~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred ccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 367899999854433222 25567999999999999876643 46677788776 331 1479999998431
Q ss_pred hhcCChhHHHHHHHHHHhccccCc-EEEEEE
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGS-LVLITV 178 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG-~lli~~ 178 (353)
-+.+-...++.+....||..| ..++..
T Consensus 122 ---yT~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 122 ---YTPEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred ---CCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 112335678999999998766 444443
No 338
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=75.50 E-value=15 Score=35.67 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=60.1
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CC-------CCCCCccEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN--LP-------YRSDFGDAA 142 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--l~-------~~~~~fD~V 142 (353)
..+.++.+||=.|||. |.++. ...++ .|+++|.++.-++.+++.+.+... |... -+ ...+.+|+|
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i-~~~~~~~~~~~~v~~~~~~g~d~v 259 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCV-NPNDYDKPIQEVIVEITDGGVDYS 259 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEE-cccccchhHHHHHHHHhCCCCCEE
Confidence 3567889999999874 33321 24566 799999999999999887764322 1111 00 112257888
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 179 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~ 179 (353)
+.... . ...+.+..+.+++| |++++.-.
T Consensus 260 id~~G-----~----~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 260 FECIG-----N----VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EECCC-----C----HHHHHHHHHHhhcCCCeEEEEec
Confidence 76432 1 24577778889886 99887654
No 339
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=75.36 E-value=17 Score=34.33 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=61.1
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~ 144 (353)
..+.++.+||-.|+|. |..+. ...+..++++..+++..+.+++.+.+-+. +..... .....+|+++.
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~-~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTI-NVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEe-cCcccCHHHHHHHHhCCCCCCEEEE
Confidence 4677888999998763 44332 25678899998899988888766543221 111110 12345899987
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
... . ...+.++.+.|+++|+++...+.
T Consensus 234 ~~g-----~----~~~~~~~~~~l~~~G~~i~~g~~ 260 (337)
T cd08261 234 ATG-----N----PASMEEAVELVAHGGRVVLVGLS 260 (337)
T ss_pred CCC-----C----HHHHHHHHHHHhcCCEEEEEcCC
Confidence 521 1 24578888999999998876544
No 340
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=74.80 E-value=16 Score=34.15 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=59.3
Q ss_pred CCCCCCEEEEECCcc-cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606 78 SLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 153 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~ 153 (353)
.+.++.+||=.|+|. |..+ ....|..+++++.++...+.+++.+...... .... .....+|+++... ..
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~-~~~~-~~~~~~d~vid~~-----g~ 224 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLP-DEAE-SEGGGFDVVVEAT-----GS 224 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeC-cccc-ccCCCCCEEEECC-----CC
Confidence 567788888888653 2222 1256778999999999999998876543221 1111 2345689988752 11
Q ss_pred hhHHHHHHHHHHhccccCcEEEEE
Q 018606 154 ESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 154 ~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
...+..+.+.|+++|++++.
T Consensus 225 ----~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 225 ----PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----hHHHHHHHHHhhcCCEEEEE
Confidence 24567778889999999873
No 341
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=74.52 E-value=8.1 Score=38.70 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=54.5
Q ss_pred CCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606 79 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 79 l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
.-.|.+|+=+|+|. |..+. ...+++|+.+|+++.....+...+.++. ++... + ..+|+|+... .+
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~--~l~ea-l--~~aDVVI~aT-----G~- 277 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM--TMEEA-A--ELGDIFVTAT-----GN- 277 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec--CHHHH-H--hCCCEEEECC-----CC-
Confidence 34789999999996 43322 2456799999999876655555555432 22221 1 3579998753 12
Q ss_pred hHHHHHHH-HHHhccccCcEEEEE
Q 018606 155 SRRKKAIE-ELVRVVKKGSLVLIT 177 (353)
Q Consensus 155 e~~~~~l~-el~rvLkpgG~lli~ 177 (353)
..++. +....+|+|++++..
T Consensus 278 ---~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 278 ---KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred ---HHHHHHHHHhcCCCCCEEEEc
Confidence 23454 678889999877655
No 342
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=74.45 E-value=5.9 Score=37.66 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=42.5
Q ss_pred HHHHHhCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCC
Q 018606 72 VATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN 131 (353)
Q Consensus 72 ~~~~l~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~ 131 (353)
+...|. ..++...+|.--|.|.+... ....+++|+|..+.+++.|+++ ++.+++..+.+
T Consensus 15 ~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 15 VVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 334443 45668999999999987542 3446899999999999999986 35566655444
No 343
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=72.84 E-value=12 Score=36.14 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=54.1
Q ss_pred CCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHH-HHHHHHcCCeEEEeeC--CCCCCCCCCccEEEechhhhhc
Q 018606 79 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSL-IKICVDRGHEVLVADA--VNLPYRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 79 l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~-l~~a~~~~i~~~~~D~--~~l~~~~~~fD~Vi~~~vl~h~ 151 (353)
+.++.+||=.|+|. |.++. ...+..+++++.+... .+.+++.+.+.+...- ..+.-..+.+|+|+....
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g---- 256 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS---- 256 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC----
Confidence 46788888899874 33321 2456788888877654 3455566654332110 011100124788876432
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 152 STESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 152 ~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
. ...+.+..+.|++||++++.-
T Consensus 257 -~----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 -A----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred -C----HHHHHHHHHHhcCCcEEEEeC
Confidence 2 235777889999999988764
No 344
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=72.47 E-value=16 Score=38.42 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=64.4
Q ss_pred CEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCCccEEEechhhhhcCCh
Q 018606 83 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
.+|+=+|||. |..+. ...+..++.+|.++..++.+++.+..++.+|..+.. ..-+..|++++. +.++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~-----~~d~ 475 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINA-----IDDP 475 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEE-----eCCH
Confidence 5788899986 55442 245679999999999999999889999999999853 222466777764 3343
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 155 SRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 155 e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+ ....+....|.+.|+-.++.-...
T Consensus 476 ~-~n~~i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 476 Q-TSLQLVELVKEHFPHLQIIARARD 500 (621)
T ss_pred H-HHHHHHHHHHHhCCCCeEEEEECC
Confidence 3 344455566667787766655533
No 345
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=72.29 E-value=23 Score=33.62 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=60.1
Q ss_pred hCCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHH-cCCeEEEe-e-CCCC-----CCCCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVD-RGHEVLVA-D-AVNL-----PYRSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~-~~i~~~~~-D-~~~l-----~~~~~~fD~Vi 143 (353)
..+.+|.+||=.|++ -|.++. ...|+.+++++.++...+.+++ .+.+.+.. + -..+ ....+.+|+|+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~ 226 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYF 226 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEE
Confidence 357789999998873 344432 2567899999999998888887 56543221 1 1010 01124678887
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.... ...+.+..+.|+++|+++..-
T Consensus 227 d~~g----------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 227 DNVG----------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred ECCC----------HHHHHHHHHHhccCcEEEEec
Confidence 6421 135678889999999988664
No 346
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.63 E-value=23 Score=33.68 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=59.9
Q ss_pred HhCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeE-EEeeCCCC---------CCCCCCcc
Q 018606 76 LNSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEV-LVADAVNL---------PYRSDFGD 140 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~-~~~D~~~l---------~~~~~~fD 140 (353)
...+.++.+||-.|+|. |..+. ...+.. +++++.++...+.+++.+.+. +..+-... ......+|
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCC
Confidence 34677888888888764 33321 245666 899999888888887665432 22111110 12234589
Q ss_pred EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
+|+.... . ...+..+.+.|+++|+++...+
T Consensus 237 ~vld~~g-----~----~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 237 VVIECTG-----A----ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred EEEECCC-----C----HHHHHHHHHHhhcCCEEEEEcc
Confidence 9987532 1 2357788899999999887654
No 347
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=71.25 E-value=25 Score=32.70 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=64.1
Q ss_pred CEEEEECCcccccc-cc--CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCC-----C---CCCCCCccE
Q 018606 83 SLVLDAGCGNGKYL-GL--NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVN-----L---PYRSDFGDA 141 (353)
Q Consensus 83 ~~VLDvGCG~G~~~-~~--~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~-----l---~~~~~~fD~ 141 (353)
..|+.+|||-=.-. +. .++..++=+|.-. +++.-++. +..++.+|+.. + .+..+.--+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 47999999965432 22 2356777777644 33322211 45677778752 1 132334457
Q ss_pred EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+++-+++.+++..+ ...+|+.+.+...||+.+++.....
T Consensus 162 ~i~EGvl~YL~~~~-v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 162 WLWEGLLMYLTEEA-VDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eeecchhhcCCHHH-HHHHHHHHHHhCCCCcEEEEEeccc
Confidence 88889999998655 7889999998888999988876553
No 348
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=71.20 E-value=30 Score=33.15 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=57.1
Q ss_pred CCCCCCEEEEECCcc-cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-----------CCCCCccE
Q 018606 78 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-----------YRSDFGDA 141 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-----------~~~~~fD~ 141 (353)
.+.++.+||=.|+|. |..+ ....+. .|++++.++.-.+.+++.+++.+. +..... .....+|+
T Consensus 174 ~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~~~~d~ 252 (361)
T cd08231 174 PVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATI-DIDELPDPQRRAIVRDITGGRGADV 252 (361)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEE-cCcccccHHHHHHHHHHhCCCCCcE
Confidence 344778888888753 2222 124567 899999999888888776654322 111111 11245898
Q ss_pred EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
|+.... . ...+....+.|+++|++++.-
T Consensus 253 vid~~g-----~----~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 253 VIEASG-----H----PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred EEECCC-----C----hHHHHHHHHHhccCCEEEEEc
Confidence 886421 1 235677789999999998664
No 349
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=70.90 E-value=14 Score=38.73 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=64.9
Q ss_pred CEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCCccEEEechhhhhcCCh
Q 018606 83 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
.+|+=+|+|. |..+. ...+..++.+|.+++.++.+++.+..++.+|..+.. ..-+..|++++. ++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~-----~~d~ 475 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVIT-----CNEP 475 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEE-----eCCH
Confidence 4677788875 44332 256779999999999999999999999999999743 222456777664 3343
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 155 SRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 155 e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+ ....+-...|.+.|...++.-....
T Consensus 476 ~-~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 476 E-DTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 3 2344555667778888887776543
No 350
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=70.81 E-value=23 Score=34.23 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=59.6
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCC---------CCCCCCccEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNL---------PYRSDFGDAA 142 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l---------~~~~~~fD~V 142 (353)
..+.++.+||=+|+|. |.++. ...+. .|+++|.++.-++.+++.+.+.+. |.... .+..+.+|+|
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~v~~~~~~g~d~v 260 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCV-NPKDHDKPIQQVLVEMTDGGVDYT 260 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEE-cccccchHHHHHHHHHhCCCCcEE
Confidence 3567889999998764 22321 24566 799999999999999877654322 11110 0112357888
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 179 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~ 179 (353)
+... .. ...+....+.|+++ |++++.-.
T Consensus 261 id~~-----g~----~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 261 FECI-----GN----VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EECC-----CC----hHHHHHHHHhhccCCCeEEEEcc
Confidence 7642 11 24677788899887 99887643
No 351
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=70.74 E-value=22 Score=33.68 Aligned_cols=94 Identities=16% Similarity=0.219 Sum_probs=59.0
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEe-eCCC---C-C-CCCCCccEEEec
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVA-DAVN---L-P-YRSDFGDAAISI 145 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~-D~~~---l-~-~~~~~fD~Vi~~ 145 (353)
..+.++.+||-.|+|. |..+. ...+.. +++++.++...+.+++.+...+.. .-.. + . .....+|+++..
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 234 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA 234 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC
Confidence 3567888999998754 44331 245665 999999998888887665432221 1110 0 1 112348998865
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
. .. ...+..+.+.|+++|+++....
T Consensus 235 ~-----g~----~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 235 A-----GS----PATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred C-----CC----HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 11 3467788999999999877653
No 352
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=70.69 E-value=29 Score=34.27 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=56.0
Q ss_pred CCCCCCEEEEEC-Ccc-ccccc---cCC--C-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC---CC-----
Q 018606 78 SLPSGSLVLDAG-CGN-GKYLG---LNP--D-CFFVGCDISPSLIKICVDR--------GHEVLVADAVN---LP----- 133 (353)
Q Consensus 78 ~l~~~~~VLDvG-CG~-G~~~~---~~~--~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~---l~----- 133 (353)
.+.+|.+||=+| +|. |.++. ... + ..|+++|.++.-++.+++. +.+....|... +.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHH
Confidence 467788998887 453 44432 122 2 3799999999999999885 33322222211 10
Q ss_pred -CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 134 -YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 134 -~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.....+|+|+.... . ...+....+.|+++|.+++..
T Consensus 252 ~t~g~g~D~vid~~g-----~----~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 252 LTGGQGFDDVFVFVP-----V----PELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred HhCCCCCCEEEEcCC-----C----HHHHHHHHHHhccCCeEEEEE
Confidence 11235888876421 1 246777888999988776543
No 353
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=70.58 E-value=32 Score=32.14 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=60.0
Q ss_pred hCCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~~~~fD~Vi~ 144 (353)
..+.+|.+||=.|.+ .|.++. ...|+.|++++.++.-.+.+++.+.+.+. |..... .....+|+|+.
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi-~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVF-NYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEE-eCCCccHHHHHHHHCCCCcEEEEE
Confidence 356788899988853 344432 25677899999999999999887764332 221111 11245888876
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
... ...+....+.|+++|+++..-
T Consensus 218 ~~g----------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 NVG----------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCC----------HHHHHHHHHhhccCCEEEEEc
Confidence 421 135678889999999987653
No 354
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=70.40 E-value=14 Score=36.10 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=55.1
Q ss_pred CCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHH-HHHHHHcCCeEEEeeC--CCCCCCCCCccEEEechhhhhcC
Q 018606 80 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSL-IKICVDRGHEVLVADA--VNLPYRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 80 ~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~-l~~a~~~~i~~~~~D~--~~l~~~~~~fD~Vi~~~vl~h~~ 152 (353)
.++.+||=.|+|. |.++. ...+..+++++.+... .+.+++.+.+.....- ..+.-..+.+|+|+-...
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G----- 251 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVS----- 251 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCC-----
Confidence 5788899888864 33321 2456789999987554 6677666664432110 000000124788876431
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
. ...+....+.|++||+++..-.
T Consensus 252 ~----~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 A----EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred c----HHHHHHHHHhhcCCCEEEEEcc
Confidence 2 2357778889999999987643
No 355
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=70.18 E-value=16 Score=34.63 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=57.8
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeE-EEeeCCCC------CCCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEV-LVADAVNL------PYRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~-~~~D~~~l------~~~~~~fD~Vi~ 144 (353)
..+.++.+||-.|+|. |..+. ...+. .+++++.++...+.+++.+... +...-..+ -...+.+|+++.
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 4567788898887753 44331 23454 7889999888888887765432 21111111 012356898886
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
... . ...+.++.+.|+++|+++...
T Consensus 243 ~~g-----~----~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVG-----F----EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccC-----C----HHHHHHHHHHhhcCCEEEEEc
Confidence 421 1 246778889999999987664
No 356
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=69.30 E-value=25 Score=33.95 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=58.4
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCC--C-------CCCCCCccEEE
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN--L-------PYRSDFGDAAI 143 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--l-------~~~~~~fD~Vi 143 (353)
.+.++.+||=+|+|. |.++. ...+. .|+++|.++.-++.+++.+.+.+. +... . .+....+|+|+
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i-~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFI-NPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEe-ccccccchHHHHHHHHhCCCCCEEE
Confidence 567889999888864 33321 24566 799999999999999877653221 1111 0 01123578887
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 179 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~ 179 (353)
... .. ...+.+..+.|+++ |++++.-.
T Consensus 260 d~~-----g~----~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 260 ECT-----GN----ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ECC-----CC----hHHHHHHHHhcccCCCEEEEEcC
Confidence 642 11 24577788899886 99887643
No 357
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=68.99 E-value=23 Score=34.19 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=59.5
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe-eC--CCC-----CCCCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVA-DA--VNL-----PYRSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~-D~--~~l-----~~~~~~fD~Vi 143 (353)
..+.+|.+||=.|+|. |.++. ...+. .|+++|.++..++.+++.+...... +- ..+ ....+.+|+++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 3567889999998763 33321 24566 7999999999999998876543221 10 000 01123578887
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEcC
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVWA 180 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~~ 180 (353)
-.. .. ...+....+.+++| |++++.-..
T Consensus 263 d~~-----G~----~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 263 ECT-----GN----IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred ECC-----CC----hHHHHHHHHHhhcCCCEEEEECcC
Confidence 642 11 24566777888996 998876543
No 358
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=68.99 E-value=4.6 Score=37.24 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=42.2
Q ss_pred CEEEEECCccccccc--------c----CCCcEEEEEeCCHHHHHHHHHc--C---------CeEEE-eeCCCCCCCCCC
Q 018606 83 SLVLDAGCGNGKYLG--------L----NPDCFFVGCDISPSLIKICVDR--G---------HEVLV-ADAVNLPYRSDF 138 (353)
Q Consensus 83 ~~VLDvGCG~G~~~~--------~----~~~~~v~gvD~S~~~l~~a~~~--~---------i~~~~-~D~~~l~~~~~~ 138 (353)
-.|+|+|+|+|.++. . ....+++-+|+|+.+.+.-+++ . ..+.- .++...| .
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~~~l~~~p----~ 95 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWLDDLEEVP----F 95 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEESSGGCS-----C
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchhhhhhccc----C
Confidence 599999999999753 1 1246999999999998777765 1 12222 2222333 3
Q ss_pred ccEEEechhhhhcCC
Q 018606 139 GDAAISIAVLHHLST 153 (353)
Q Consensus 139 fD~Vi~~~vl~h~~~ 153 (353)
.-+|+++.+|..++-
T Consensus 96 ~~~iiaNE~~DAlP~ 110 (252)
T PF02636_consen 96 PGFIIANELFDALPV 110 (252)
T ss_dssp CEEEEEESSGGGS--
T ss_pred CEEEEEeeehhcCce
Confidence 467888888888874
No 359
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=67.83 E-value=9.1 Score=38.65 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=56.9
Q ss_pred CCCEEEEECCcc-cccccc---CCCcEEE------EEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606 81 SGSLVLDAGCGN-GKYLGL---NPDCFFV------GCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 81 ~~~~VLDvGCG~-G~~~~~---~~~~~v~------gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h 150 (353)
.+.+|+=||||+ |..... ..|..|+ ++|......+.|.+.++.+ .+.... -...|+|++.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v--~~~~Ea---~~~ADvVviL----- 104 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV--GTYEEL---IPQADLVINL----- 104 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc--CCHHHH---HHhCCEEEEc-----
Confidence 568999999997 553222 3455666 5666666777777766643 222221 2345888875
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
+++.. ...+..++...||||..|.++
T Consensus 105 lPDt~-q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 105 TPDKQ-HSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred CChHH-HHHHHHHHHhhCCCCCEEEec
Confidence 44443 456679999999999998877
No 360
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=67.29 E-value=37 Score=31.84 Aligned_cols=90 Identities=21% Similarity=0.171 Sum_probs=58.4
Q ss_pred hCCCCCCEEEEECCcc-cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606 77 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 152 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~ 152 (353)
..+.++.+||=.|||. |..+ ....+..+++++.+....+.+++.+++... +.... ....+|+++....
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~--~~~~vD~vi~~~~----- 234 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAG-DSDDL--PPEPLDAAIIFAP----- 234 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEe-ccCcc--CCCcccEEEEcCC-----
Confidence 4567777887788764 2222 125678999999999888888766654322 11111 2345788775321
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 153 TESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 153 ~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
. ...+.++.+.|+++|++++..
T Consensus 235 ~----~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 V----GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred c----HHHHHHHHHHhhcCCEEEEEc
Confidence 1 246888999999999988653
No 361
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=67.02 E-value=39 Score=33.24 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=61.4
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeC-CCCC------CCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADA-VNLP------YRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~-~~l~------~~~~~fD~Vi~ 144 (353)
..+.++.+||=.|+|. |.++. ...+.. ++.+|.++.-++.|++.+.+.+...- ..+. .....+|+++-
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 3567788887788864 33321 234554 66779999899999998876432110 0110 11235898886
Q ss_pred chhhhhcC-----ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 145 IAVLHHLS-----TESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 145 ~~vl~h~~-----~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
...-.... ........+.+..+++++||++++.-.
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 44321000 000013478889999999999988754
No 362
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=66.49 E-value=3.7 Score=42.62 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=57.5
Q ss_pred hCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC----CC----CCCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN----LP----YRSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----l~----~~~~~fD~Vi 143 (353)
..+.++..|||+||.+|.+++. ..+.-|+|+|+-+--. -.++.-++.|++. .+ +.....|+|+
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp----~~~c~t~v~dIttd~cr~~l~k~l~t~~advVL 115 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP----IPNCDTLVEDITTDECRSKLRKILKTWKADVVL 115 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc----CCccchhhhhhhHHHHHHHHHHHHHhCCCcEEe
Confidence 3567889999999999998752 4567999999855210 0022222333332 11 1112336665
Q ss_pred echh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 144 SIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 144 ~~~v--------l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
.-++ =..+........+|.-....|+.||.++--++-.+.
T Consensus 116 hDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~d 163 (780)
T KOG1098|consen 116 HDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSED 163 (780)
T ss_pred ecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCc
Confidence 5221 111111222345666677788999996666665444
No 363
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=65.22 E-value=9.5 Score=31.73 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=54.9
Q ss_pred EEEECCcc-cccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeC-------CCCC---CCCCCccEEEechhhhh
Q 018606 85 VLDAGCGN-GKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADA-------VNLP---YRSDFGDAAISIAVLHH 150 (353)
Q Consensus 85 VLDvGCG~-G~~~~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~-------~~l~---~~~~~fD~Vi~~~vl~h 150 (353)
|+=+|+|. |.++.. ..+..|+.++.+. .++..++.++.+...+. ...+ .....+|+|+..-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v---- 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV---- 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S----
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe----
Confidence 45578875 554331 4788999999988 66766666554433330 0011 2356899988853
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.... ...++..+.+.+.++..+++.-
T Consensus 76 -Ka~~-~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 76 -KAYQ-LEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp -SGGG-HHHHHHHHCTGEETTEEEEEES
T ss_pred -cccc-hHHHHHHHhhccCCCcEEEEEe
Confidence 2111 4678999999999997665553
No 364
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=65.11 E-value=47 Score=31.47 Aligned_cols=92 Identities=22% Similarity=0.291 Sum_probs=56.1
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEE-eeCCCCC-----CCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLV-ADAVNLP-----YRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~-~D~~~l~-----~~~~~fD~Vi~~~ 146 (353)
...++.+||-.|+|. |..+. ...+. .+++++.++.-...+++.+.+.+. ..-.... ...+.+|+|+...
T Consensus 160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~ 239 (341)
T cd05281 160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMS 239 (341)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECC
Confidence 345777888778753 33321 24566 788888888877877776653321 1111110 1234688888642
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
. . ...+.++.+.|+++|+++...
T Consensus 240 g-----~----~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 240 G-----N----PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred C-----C----HHHHHHHHHHhccCCEEEEEc
Confidence 1 1 245777889999999987664
No 365
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=64.86 E-value=8.5 Score=37.55 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=30.8
Q ss_pred CCCEEEEECCccccccc--------cC----CCcEEEEEeCCHHHHHHHHHc
Q 018606 81 SGSLVLDAGCGNGKYLG--------LN----PDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~~--------~~----~~~~v~gvD~S~~~l~~a~~~ 120 (353)
..-.++++|.|+|.++. .. ...++.-|++|+++.+.=++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 34589999999999752 23 357999999999987765554
No 366
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=64.78 E-value=32 Score=35.64 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=59.8
Q ss_pred CEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCCccEEEechhhhhcCCh
Q 018606 83 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
.+++=+|||. |..+. ...+..++.+|.+++.++.+++.+..++.+|..+.. ..-+..|.++.. .+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~-----~~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLT-----IPNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEE-----cCCh
Confidence 5788888886 44432 145779999999999999999889999999998732 223466766543 2232
Q ss_pred hHHHHHHHHHHhccccCcEEEEEE
Q 018606 155 SRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 155 e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+ ....+-...|...|+..++.-.
T Consensus 493 ~-~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 493 Y-EAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEE
Confidence 2 1222333445667777666554
No 367
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=64.36 E-value=53 Score=31.09 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=57.7
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEee-CCCC------CCCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVAD-AVNL------PYRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D-~~~l------~~~~~~fD~Vi~ 144 (353)
..+.++.+||-.|+|. |..+. ...+.. |++++.++.-.+.+++.+++.+... ...+ ......+|+++.
T Consensus 157 ~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld 236 (340)
T TIGR00692 157 AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLE 236 (340)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEE
Confidence 3456777787777652 33321 245665 8899888888888877765432211 1110 012346899987
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
... . ...+.++.+.|+++|+++..-.
T Consensus 237 ~~g-----~----~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 237 MSG-----A----PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCC-----C----HHHHHHHHHhhcCCCEEEEEcc
Confidence 521 1 2457788999999999876643
No 368
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=64.25 E-value=16 Score=38.74 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=33.5
Q ss_pred eEEEeeCCC-CCCCCCCccEEEechhhhhcCChhH-HHHHHHHHHhccccCcEEEEEE
Q 018606 123 EVLVADAVN-LPYRSDFGDAAISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 123 ~~~~~D~~~-l~~~~~~fD~Vi~~~vl~h~~~~e~-~~~~l~el~rvLkpgG~lli~~ 178 (353)
++..+|+.. ++--...||+++.-+.=- -.+++. -..+++.|.|+++|||++.-++
T Consensus 150 ~l~~gd~~~~~~~~~~~~d~~~lD~FsP-~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 150 DLWFGDANELLPQLDARADAWFLDGFAP-AKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred EEEecCHHHHHHhccccccEEEeCCCCC-ccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 345566654 221125689998754211 011111 2579999999999999988665
No 369
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=62.99 E-value=7.7 Score=38.63 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=37.5
Q ss_pred CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606 78 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~ 120 (353)
.+.+|..|-|+-||-|-++. ...+++|++-|+.++++++.+..
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~n 290 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKAN 290 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHh
Confidence 45789999999999999864 36679999999999999998875
No 370
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=62.57 E-value=43 Score=31.69 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCC-CCC---CCCCCccEEEechhhh
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLP---YRSDFGDAAISIAVLH 149 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~-~l~---~~~~~fD~Vi~~~vl~ 149 (353)
.+.++.+||=.|||. |..+. ...+..+++++.++.-++.+++.+.+.+..... .+. .....+|+++...
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~--- 236 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATA--- 236 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECC---
Confidence 567788999999653 33321 255678999999998899987776543321111 110 0012478887531
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.. ...+..+.+.|+++|+++....
T Consensus 237 --g~----~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 237 --PN----AKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred --Cc----hHHHHHHHHHcccCCEEEEEec
Confidence 11 2467778899999999887654
No 371
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=62.36 E-value=10 Score=36.34 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=43.1
Q ss_pred CCeEEEeeCCCCCCCC-------CCccEEEechhhhhcCCh--hHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 121 GHEVLVADAVNLPYRS-------DFGDAAISIAVLHHLSTE--SRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 121 ~i~~~~~D~~~l~~~~-------~~fD~Vi~~~vl~h~~~~--e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
++.|.+.|+..+..++ ...++|...+++.-+-.. ..-.++|..+-..++||-.|+|..-+.
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 4688999998876422 246777777766543322 224578999999999999999987554
No 372
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=61.99 E-value=36 Score=31.70 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=52.2
Q ss_pred EEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeC------CCCCCCCCCccEEEechhhhhcCC
Q 018606 84 LVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADA------VNLPYRSDFGDAAISIAVLHHLST 153 (353)
Q Consensus 84 ~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~------~~l~~~~~~fD~Vi~~~vl~h~~~ 153 (353)
+|+=||+|. |.++. ...+..|+.++.++..++..++.++.+..++. ..-+-....+|+|+..-- .
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k-----~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVK-----A 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEecc-----c
Confidence 578899987 44332 24567999999987777777666654311110 010111156788877532 1
Q ss_pred hhHHHHHHHHHHhccccCcEEEEE
Q 018606 154 ESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 154 ~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
.. ...++..+...+.++..+++.
T Consensus 77 ~~-~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 77 YQ-LPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred cc-HHHHHHHHhhhcCCCCEEEEe
Confidence 11 467788888888777665543
No 373
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=59.72 E-value=57 Score=31.02 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=59.5
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi 143 (353)
..++++.+||=.|+|. |..+. ...+. .++++|.++..++.+++.+.+.+. +..... .....+|+++
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v-~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIV-DYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEe-cCCCCCHHHHHHHHhCCCCCcEEE
Confidence 3567888999888763 33321 24455 699999999989998887654332 111111 1224589888
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.... . ...+.++.+.|+++|+++...
T Consensus 241 d~~g-----~----~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 241 IAGG-----G----QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred ECCC-----C----HHHHHHHHHHhhcCCEEEEec
Confidence 6422 1 246788899999999988654
No 374
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=58.87 E-value=35 Score=32.08 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=58.6
Q ss_pred CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606 78 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
.+.+|+..+|+|+-+|..+- ...+..|+++|-.+ |....... .++-...|..+........|-.+|..|- .
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE----k- 281 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-MAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE----K- 281 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcceEEEEeccch-hhhhhhcccceeeeeccCcccccCCCCCceEEeehhc----C-
Confidence 46789999999999999864 36788999999654 43333333 4666777777765445677888887542 2
Q ss_pred hHHHHHHHHHHhccccC
Q 018606 155 SRRKKAIEELVRVVKKG 171 (353)
Q Consensus 155 e~~~~~l~el~rvLkpg 171 (353)
+.++-.-|...|..|
T Consensus 282 --P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 --PARVAALIAKWLVNG 296 (358)
T ss_pred --cHHHHHHHHHHHHcc
Confidence 445555566666544
No 375
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=57.49 E-value=16 Score=29.99 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=35.2
Q ss_pred CceeeeeeeecccccHHHHHhcccCCcEEEEccccCCCeEEE
Q 018606 307 GAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIV 348 (353)
Q Consensus 307 ~~~~~~ryyH~F~~gEL~~l~~~~~~~~v~~~~~d~~nwcvi 348 (353)
++.+.-=+-|=|+..+++.|++++| ++++..+.|.+.|+.+
T Consensus 85 GE~I~~e~S~Ky~~~~~~~l~~~aG-l~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 85 GERIHTENSYKYSPEEFEALAEQAG-LEVEKRWTDPKGDFSL 125 (127)
T ss_pred CCEEEEEEeeCcCHHHHHHHHHHCC-CeeEEEEECCCCCeEE
Confidence 4456777889999999999999986 9999999999999543
No 376
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=57.31 E-value=76 Score=29.96 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=56.7
Q ss_pred CCCCC--CEEEEECC--ccccccc---cCCCc-EEEEEeCCHHHHHHHHH-cCCeEEEeeC-CCC-----CCCCCCccEE
Q 018606 78 SLPSG--SLVLDAGC--GNGKYLG---LNPDC-FFVGCDISPSLIKICVD-RGHEVLVADA-VNL-----PYRSDFGDAA 142 (353)
Q Consensus 78 ~l~~~--~~VLDvGC--G~G~~~~---~~~~~-~v~gvD~S~~~l~~a~~-~~i~~~~~D~-~~l-----~~~~~~fD~V 142 (353)
.+.++ .+||=.|+ |.|.++. ...|+ .|++++.+++..+.+++ .+.+.+...- ..+ ......+|+|
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEE
Confidence 45555 78988886 3454432 24576 79999999988888876 5654322111 111 0112458988
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+.... . ..+.++.+.|+++|+++..-
T Consensus 229 id~~g-----~-----~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNVG-----G-----EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECCC-----c-----HHHHHHHHHhccCCEEEEEe
Confidence 86422 1 23567788999999998753
No 377
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=57.16 E-value=64 Score=30.47 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=55.9
Q ss_pred CCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCCccEEEechh
Q 018606 78 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAV 147 (353)
Q Consensus 78 ~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----~~~~~~fD~Vi~~~v 147 (353)
.+.++.+||=.|+. .|..+. ...++.+++++.+. ..+.+++.+++++....... ......+|+|+....
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 252 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVG 252 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCC
Confidence 56788999999973 233322 25677888888665 67777766765332211111 012345898886432
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
...+..+.+.|+++|.++..-
T Consensus 253 ----------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 253 ----------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred ----------HHHHHHHHHHhccCCEEEEec
Confidence 124677789999999987653
No 378
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=56.50 E-value=34 Score=29.54 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=43.7
Q ss_pred HHcCCeEE-EeeCCCCC----CCCCCccEEEechhhhhcC------------ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 118 VDRGHEVL-VADAVNLP----YRSDFGDAAISIAVLHHLS------------TESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 118 ~~~~i~~~-~~D~~~l~----~~~~~fD~Vi~~~vl~h~~------------~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
++.++.+. ..|++.+. .....||.||-+.- |.. ..+.+..++..+.++|+++|.+.|+...
T Consensus 50 ~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 50 RELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred hhcCCccccCCCCCcccccccccCCcCCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 33466554 45777765 35689999988542 222 1223568899999999999999999866
Q ss_pred CCc
Q 018606 181 VEQ 183 (353)
Q Consensus 181 ~~~ 183 (353)
...
T Consensus 128 ~~p 130 (166)
T PF10354_consen 128 GQP 130 (166)
T ss_pred CCC
Confidence 544
No 379
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=55.54 E-value=78 Score=29.91 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=57.2
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCC-cEEEEEeCCHHHHHHHHHcCCeEEEeeC-CCC-----C-CCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPD-CFFVGCDISPSLIKICVDRGHEVLVADA-VNL-----P-YRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~-~~l-----~-~~~~~fD~Vi~ 144 (353)
..+.++.+||=.|+|. |..+. ...+ ..+++++.++.....+++.+++.+...- ... . .....+|+|+.
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIE 241 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEE
Confidence 3466777777777753 22221 2445 6889999999888888876653322111 110 0 12345898886
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.. .. ...+..+.+.|+++|+++...
T Consensus 242 ~~-----g~----~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 242 AV-----GI----PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CC-----CC----HHHHHHHHHhccCCcEEEEec
Confidence 43 22 235788889999999987654
No 380
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.09 E-value=1e+02 Score=28.39 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=59.3
Q ss_pred CCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCCccEEEechh
Q 018606 78 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAV 147 (353)
Q Consensus 78 ~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----~~~~~~fD~Vi~~~v 147 (353)
.+.++.+||=.|+. .|..+. ...++.|+++..++...+.+++.+++.+..+-..+ .+ ...+|+++....
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~~ 217 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLELVG 217 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEECCC
Confidence 46778899988873 333332 35678899999999888888777764433221111 12 346888876432
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
...+.++.+.|+++|+++..-
T Consensus 218 ----------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 218 ----------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred ----------hHHHHHHHHHhccCCEEEEEc
Confidence 135777889999999987664
No 381
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=53.55 E-value=19 Score=34.53 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=59.6
Q ss_pred CEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHc-C--CeEEEeeCCCCCCCCCCccEEEechhhhhcCChh
Q 018606 83 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR-G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 155 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~-~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e 155 (353)
.+|.=||.|. |..+. ...++.|+-+|+|..-++..... + +........++...-...|++|..-.|---..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka-- 246 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA-- 246 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC--
Confidence 4666777775 33332 35678999999998887776654 2 34444444443333356788887655544444
Q ss_pred HHHHHHHHHHhccccCcEEE
Q 018606 156 RRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 156 ~~~~~l~el~rvLkpgG~ll 175 (353)
+.-..+++...+|||+.++
T Consensus 247 -PkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 247 -PKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -ceehhHHHHHhcCCCcEEE
Confidence 6778999999999997754
No 382
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=52.24 E-value=82 Score=30.23 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=57.1
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEE-eeCCCC------CCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLV-ADAVNL------PYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~-~D~~~l------~~~~~~fD~Vi~~ 145 (353)
.+.++.+||=.|+|. |..+. ...+.. +++++.++...+.+++.+++.+. .+-..+ ......+|+|+..
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~ 263 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEA 263 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEe
Confidence 446777888776642 33321 244565 99999999888888766654322 111111 0123568988864
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
+.. ...+.++.+.|+++|+++....
T Consensus 264 -----vg~----~~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 264 -----LGK----PETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred -----CCC----HHHHHHHHHHHhcCCEEEEEcc
Confidence 222 1257778899999999887743
No 383
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=52.19 E-value=68 Score=31.26 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=60.1
Q ss_pred CCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHcCCe-EEEe----eCCC--CCCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHE-VLVA----DAVN--LPYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~~i~-~~~~----D~~~--l~~~~~~fD~Vi~~ 145 (353)
..++|.+|.=+|||.=.++. .....+++++|+.+.-++.|++.+.+ ++.. |+.. ..+-++-.|.++-.
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~ 261 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFEC 261 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEc
Confidence 56788899999998533321 13335999999999999999998643 3322 1111 01223344555332
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
.-+ ...++.....++++|..++.-.+..
T Consensus 262 -----~G~----~~~~~~al~~~~~~G~~v~iGv~~~ 289 (366)
T COG1062 262 -----VGN----VEVMRQALEATHRGGTSVIIGVAGA 289 (366)
T ss_pred -----cCC----HHHHHHHHHHHhcCCeEEEEecCCC
Confidence 223 3467777777788999888865543
No 384
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=51.86 E-value=1.3e+02 Score=28.62 Aligned_cols=93 Identities=11% Similarity=0.145 Sum_probs=59.5
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi 143 (353)
..+.++.+||=.|+|. |.++. ...+. .|++++.++...+.+++.+.+.+. |..... .....+|+|+
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i-~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVL-DPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-CCCccCHHHHHHHHhCCCCCCEEE
Confidence 3567788888888653 22221 24566 899999999998888777654432 222111 1123489988
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.... . ...+..+.+.|+++|+++..-.
T Consensus 247 d~~g-----~----~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 247 DCAG-----V----QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred ECCC-----C----HHHHHHHHHhccCCCEEEEEcc
Confidence 7532 1 2357788899999999877643
No 385
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=50.85 E-value=1e+02 Score=30.65 Aligned_cols=91 Identities=11% Similarity=0.127 Sum_probs=57.0
Q ss_pred EEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHH-cCCeEEEeeCCCCC----CCCCCccEEEechhhhhcCCh
Q 018606 84 LVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVD-RGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 84 ~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~-~~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
+|+=+|||. |..+. ...+..|+++|.++..++.+++ .++.++.+|..+.. ..-..+|.|++.. ++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~-----~~~ 76 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT-----DSD 76 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec-----CCh
Confidence 577788864 33322 1457899999999998888876 57889999987532 2234578777753 121
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 155 SRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 155 e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+ ....+..+.+.+.|.-.+++.+-.
T Consensus 77 ~-~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 E-TNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred H-HHHHHHHHHHHhcCCCeEEEEECC
Confidence 1 334455566666555555555433
No 386
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=50.64 E-value=47 Score=31.45 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=54.1
Q ss_pred CCCEEEEECCccc-cccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhH
Q 018606 81 SGSLVLDAGCGNG-KYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156 (353)
Q Consensus 81 ~~~~VLDvGCG~G-~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~ 156 (353)
.+.+++=+|+|.- ..+. ...++.|+++|.++...+.++..+.++.. ...+.-.-..+|+||... +.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~--~~~l~~~l~~aDiVI~t~-----p~--- 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFH--LSELAEEVGKIDIIFNTI-----PA--- 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeec--HHHHHHHhCCCCEEEECC-----Ch---
Confidence 5789999999863 3221 24567999999998887777776665432 122221124579998852 21
Q ss_pred HHHHHHHHHhccccCcEEEEE
Q 018606 157 RKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 157 ~~~~l~el~rvLkpgG~lli~ 177 (353)
.-+-+++...++||+.++-.
T Consensus 221 -~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 221 -LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred -hhhhHHHHHcCCCCcEEEEE
Confidence 12335667788898765433
No 387
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=50.12 E-value=1.3e+02 Score=27.49 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=57.7
Q ss_pred hCCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-eCCCCC------CCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNLP------YRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l~------~~~~~fD~Vi~ 144 (353)
..+.++..||-.||. .|..+. ...+..+++++.+....+.+++.++..... +..... .....+|+++.
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~ 214 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYD 214 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEE
Confidence 356778999999983 233322 256778999999998888887666533221 111110 12235788876
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
... ...+..+.+.++++|.++....
T Consensus 215 ~~g----------~~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 215 PVG----------GDVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred Ccc----------HHHHHHHHHhhccCCEEEEEcc
Confidence 432 1234566788899999876654
No 388
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=49.98 E-value=60 Score=31.17 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=58.8
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi 143 (353)
..+.++.+||-.|+|. |..+. ...+.. |++++.++...+.+++.++..+. +..... .+...+|+++
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv-~~~~~~~~~~l~~~~~~~~vd~vl 256 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTV-NASEDDAVEAVRDLTDGRGADYAF 256 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEe-CCCCccHHHHHHHHcCCCCCCEEE
Confidence 3567788888888753 33321 245664 99999999888888766653322 111110 1234589887
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.... . ...+..+.+.|+++|+++....
T Consensus 257 d~~~-----~----~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 257 EAVG-----R----AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred EcCC-----C----hHHHHHHHHHhhcCCeEEEEec
Confidence 6421 1 2457788899999999887644
No 389
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=49.73 E-value=70 Score=30.77 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=52.5
Q ss_pred CCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHH-HcCCeEEEeeCCC--CCCCCCCccEEEechhhhhc
Q 018606 79 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICV-DRGHEVLVADAVN--LPYRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 79 l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~-~~~i~~~~~D~~~--l~~~~~~fD~Vi~~~vl~h~ 151 (353)
..++.+||=.|+|. |.++. ...+..+++++.++.....+. +.+.+....+... +.-....+|+|+...
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~----- 252 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV----- 252 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC-----
Confidence 35788888887754 33321 255678888888876665554 3455432211110 100012478777642
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 152 STESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 152 ~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.. ...+..+.+.|++||+++..-
T Consensus 253 g~----~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 253 PV----FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred Cc----hHHHHHHHHHhccCCEEEEEC
Confidence 11 235677788999999988764
No 390
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=49.67 E-value=25 Score=34.69 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=58.4
Q ss_pred CCCCCCEEEEECCcccccccc---CCC-cEEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCCCC---C
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR----------------GHEVLVADAVNLP---Y 134 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~---~~~-~~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~l~---~ 134 (353)
.+.+++.-.|+|.|-|..... ..+ ..-+|+++....-+.|... .++.+++++..-. .
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 467889999999999997532 222 2556777665443333321 2456666665421 1
Q ss_pred CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 135 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 135 ~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
-....++|++..+.. +++ ...-+.++..-+++|-+++=.
T Consensus 269 I~~eatvi~vNN~~F---dp~-L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 269 IQTEATVIFVNNVAF---DPE-LKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred HhhcceEEEEecccC---CHH-HHHhhHHHHhhCCCcceEecc
Confidence 123457777776542 333 344566899999998886544
No 391
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=49.62 E-value=1e+02 Score=29.21 Aligned_cols=90 Identities=10% Similarity=-0.005 Sum_probs=55.1
Q ss_pred CEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEee-CCCC------CCCCCCccEEEechhhhh
Q 018606 83 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR-GHEVLVAD-AVNL------PYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D-~~~l------~~~~~~fD~Vi~~~vl~h 150 (353)
.+|+=+|+|. |.++. ...+..|+.++.+.+.++..++. ++.+...+ .... +-....||+|+..-=-++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 4788999986 66543 24567899999987766666543 55432111 0111 111247898876431111
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
...++..+...+.++..++..-
T Consensus 83 ------~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 83 ------AEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred ------HHHHHHHHHhhCCCCCEEEEEe
Confidence 4568889999999988665553
No 392
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=49.55 E-value=1.4e+02 Score=27.24 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=57.5
Q ss_pred CCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChh
Q 018606 81 SGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 155 (353)
Q Consensus 81 ~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e 155 (353)
++.+||=.|++ .|..+. ...+..+++++.++..++.+++.++.....+... +..+.+|+++... ..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~vl~~~-----g~-- 202 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSE--LSGAPVDLVVDSV-----GG-- 202 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecccc--ccCCCceEEEECC-----Cc--
Confidence 48889888884 333332 2567789999999998998887766432222222 1224588887642 11
Q ss_pred HHHHHHHHHHhccccCcEEEEEEc
Q 018606 156 RRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 156 ~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
..+....+.|+++|+++..-.
T Consensus 203 ---~~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 203 ---PQLARALELLAPGGTVVSVGS 223 (305)
T ss_pred ---HHHHHHHHHhcCCCEEEEEec
Confidence 246778899999999887653
No 393
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=49.26 E-value=1e+02 Score=29.04 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=56.4
Q ss_pred CCCCCCEEEEECCcc-cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~------~~~~~fD~Vi~~~ 146 (353)
.+.++.+||=.|+|. |..+ ....++ .+++++.++.-...+++.+...+..+-..+. .....+|+++...
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~ 243 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAV 243 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 456778888777652 2222 125565 7999988888777777766543322211110 1234588887642
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.. ...+.+..+.|+++|+++...
T Consensus 244 -----~~----~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 244 -----GG----AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred -----CC----HHHHHHHHHhcccCCEEEEEC
Confidence 11 246778889999999977664
No 394
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=49.10 E-value=85 Score=27.20 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=46.9
Q ss_pred CCEEEEECCcccccc-cc---CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCC---------CCCCCC
Q 018606 82 GSLVLDAGCGNGKYL-GL---NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNL---------PYRSDF 138 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~-~~---~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l---------~~~~~~ 138 (353)
...|+-+|||-=... +. .++..++-+|.-. +++.-++. +.+++.+|+.+. .+..+.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 348999999965532 22 2477888899754 33332221 357899999862 133456
Q ss_pred ccEEEechhhhhcCChhHHHHHHHHH
Q 018606 139 GDAAISIAVLHHLSTESRRKKAIEEL 164 (353)
Q Consensus 139 fD~Vi~~~vl~h~~~~e~~~~~l~el 164 (353)
.-++++-+++.+++..+ ...+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~-~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQ-VDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHH-HHHHHHHH
T ss_pred CeEEEEcchhhcCCHHH-HHHHHHHh
Confidence 66888888999998543 45555543
No 395
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=48.84 E-value=46 Score=33.87 Aligned_cols=85 Identities=21% Similarity=0.199 Sum_probs=53.1
Q ss_pred CCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChh
Q 018606 80 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 155 (353)
Q Consensus 80 ~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e 155 (353)
-.|.+|+=+|+|. |..+. ...++.|+++|.++.-...+...++.+. ++..+ -...|+|+.... +
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~--~leel---l~~ADIVI~atG-----t-- 319 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV--TLEDV---VETADIFVTATG-----N-- 319 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec--cHHHH---HhcCCEEEECCC-----c--
Confidence 4688999999997 44332 2556799999888765444444454432 22221 135699987532 1
Q ss_pred HHHHHH-HHHHhccccCcEEEEEE
Q 018606 156 RRKKAI-EELVRVVKKGSLVLITV 178 (353)
Q Consensus 156 ~~~~~l-~el~rvLkpgG~lli~~ 178 (353)
..++ .+....+|||++++-.-
T Consensus 320 --~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 320 --KDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred --ccccCHHHHhccCCCcEEEEcC
Confidence 2234 36778899998876653
No 396
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=48.22 E-value=18 Score=30.03 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=20.7
Q ss_pred EECCccc--c---cc---ccCCCcEEEEEeCCHHHHHHHHHc
Q 018606 87 DAGCGNG--K---YL---GLNPDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 87 DvGCG~G--~---~~---~~~~~~~v~gvD~S~~~l~~a~~~ 120 (353)
|||++.| . +. ...++..|+++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 2 22 235778999999999987766554
No 397
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=47.84 E-value=94 Score=29.84 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=62.1
Q ss_pred HhCCCCCCEEEEECCcccc--ccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEe----eCCC-C-CC-CCCCccEEE
Q 018606 76 LNSLPSGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVA----DAVN-L-PY-RSDFGDAAI 143 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~G~--~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~----D~~~-l-~~-~~~~fD~Vi 143 (353)
...+++|.+||=.|...|. ++. ...+..++++--+++-.+.+++.+.+.... |+.+ + .+ ....+|+|+
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~ 216 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVL 216 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEE
Confidence 3457889999999965554 332 244547777777777777888886544332 2111 1 11 223689998
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
..-. ...+.+..+.|+++|+++......
T Consensus 217 D~vG----------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 217 DTVG----------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ECCC----------HHHHHHHHHHhccCCEEEEEecCC
Confidence 8532 346777889999999999886654
No 398
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=47.77 E-value=43 Score=32.39 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=54.0
Q ss_pred CCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhH
Q 018606 81 SGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156 (353)
Q Consensus 81 ~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~ 156 (353)
.+.+|.=||.|. |.-.. ...+..|++.|......+.+...++.+ .++..+ -...|+|+.. +++++.
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v--~sl~Ea---ak~ADVV~ll-----LPd~~t 84 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV--MSVSEA---VRTAQVVQML-----LPDEQQ 84 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE--CCHHHH---HhcCCEEEEe-----CCChHH
Confidence 467899999986 54322 256789988876655556666556543 222221 2345888774 454443
Q ss_pred HHHHH-HHHHhccccCcEEEEE
Q 018606 157 RKKAI-EELVRVVKKGSLVLIT 177 (353)
Q Consensus 157 ~~~~l-~el~rvLkpgG~lli~ 177 (353)
..++ .++...|+||..|++.
T Consensus 85 -~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 85 -AHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred -HHHHHHHHHhcCCCCCEEEEC
Confidence 3444 5789999999877766
No 399
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=47.68 E-value=56 Score=30.80 Aligned_cols=88 Identities=20% Similarity=0.151 Sum_probs=55.1
Q ss_pred CEEEEECCcc-ccc-cc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhH
Q 018606 83 SLVLDAGCGN-GKY-LG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156 (353)
Q Consensus 83 ~~VLDvGCG~-G~~-~~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~ 156 (353)
.+|+=+|.|- |.. +. ......++|.|.+...++.+.+.++.....+.... ......|+|+..--+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~-~~~~~aD~VivavPi~~------ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLA-EAAAEADLVIVAVPIEA------ 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhh-hhcccCCEEEEeccHHH------
Confidence 4677888775 433 32 24445789999999999988887765543221111 11344689888644332
Q ss_pred HHHHHHHHHhccccCcEEEEEE
Q 018606 157 RKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 157 ~~~~l~el~rvLkpgG~lli~~ 178 (353)
...+++++...|++|.. +..+
T Consensus 77 ~~~~l~~l~~~l~~g~i-v~Dv 97 (279)
T COG0287 77 TEEVLKELAPHLKKGAI-VTDV 97 (279)
T ss_pred HHHHHHHhcccCCCCCE-EEec
Confidence 45688888888888744 4443
No 400
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=47.36 E-value=32 Score=31.81 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=43.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHcCCeEEEee-CCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606 99 NPDCFFVGCDISPSLIKICVDRGHEVLVAD-AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 99 ~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D-~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll 175 (353)
.+...|+|.|.++..++.|.+.++-....+ ... + ..+|+||..--+.. ...++.++...+++|+.+.
T Consensus 9 g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~--~--~~~DlvvlavP~~~------~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 9 GPDVEVYGYDRDPETLEAALELGIIDEASTDIEA--V--EDADLVVLAVPVSA------IEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp TTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHH--G--GCCSEEEE-S-HHH------HHHHHHHHHCGS-TTSEEE
T ss_pred CCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhH--h--cCCCEEEEcCCHHH------HHHHHHHhhhhcCCCcEEE
Confidence 456899999999999999988865433322 111 1 23589888654332 4678999999888876543
No 401
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=47.24 E-value=69 Score=30.23 Aligned_cols=84 Identities=20% Similarity=0.117 Sum_probs=50.9
Q ss_pred CEEEEECCcc-cccc-c--cCCC--cEEEEEeCCHHHHHHHHHcCCeEE-EeeCCCCCCCCCCccEEEechhhhhcCChh
Q 018606 83 SLVLDAGCGN-GKYL-G--LNPD--CFFVGCDISPSLIKICVDRGHEVL-VADAVNLPYRSDFGDAAISIAVLHHLSTES 155 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~-~--~~~~--~~v~gvD~S~~~l~~a~~~~i~~~-~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e 155 (353)
.+|.=||+|. |..+ . ...+ ..|+++|.++..++.+++.++... ..+.... -...|+|+...-...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~---~~~aDvViiavp~~~----- 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEA---VKGADLVILCVPVGA----- 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHH---hcCCCEEEECCCHHH-----
Confidence 5788899987 4332 1 1233 489999999998888877654221 1111111 134688887653321
Q ss_pred HHHHHHHHHHhccccCcEEE
Q 018606 156 RRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 156 ~~~~~l~el~rvLkpgG~ll 175 (353)
...++.++...+++|+.++
T Consensus 79 -~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 79 -SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -HHHHHHHHHhhCCCCCEEE
Confidence 3456777777888887543
No 402
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=46.87 E-value=1e+02 Score=29.15 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=57.3
Q ss_pred CCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEech
Q 018606 80 PSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAISIA 146 (353)
Q Consensus 80 ~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~~~ 146 (353)
.++.+||=.|+|. |..+. ...+. .+++++.++...+.+++.+.+.+. +..... .....+|+|+...
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~d~v~d~~ 240 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAV-NVAKEDLRDVMAELGMTEGFDVGLEMS 240 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEe-cCccccHHHHHHHhcCCCCCCEEEECC
Confidence 4677777778754 33321 24556 688889888888888877654322 221111 1234578887632
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
. . ...+..+.+.|+++|.++.....
T Consensus 241 g-----~----~~~~~~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 241 G-----A----PSAFRQMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred C-----C----HHHHHHHHHHHhcCCEEEEEecC
Confidence 1 1 34677788999999999887543
No 403
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=46.60 E-value=77 Score=29.99 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=56.0
Q ss_pred CCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---CCCCCccEEEechhhhhc
Q 018606 79 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVLHHL 151 (353)
Q Consensus 79 l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~---~~~~~fD~Vi~~~vl~h~ 151 (353)
+.++.+||=.|||. |..+. ...+..+++++.++..++.+++.+.+.+. +..... ...+.+|+++...
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~d~v~~~~----- 240 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFI-ATKDPEAMKKAAGSLDLIIDTV----- 240 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEe-cCcchhhhhhccCCceEEEECC-----
Confidence 56777777788753 33221 24577999999999888888766643221 111110 1134578887532
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 152 STESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 152 ~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.. ...+..+.+.|+++|+++..-.
T Consensus 241 g~----~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 241 SA----SHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred CC----cchHHHHHHHhcCCCEEEEEec
Confidence 22 1246778899999999887643
No 404
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=46.54 E-value=1.6e+02 Score=28.61 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=59.4
Q ss_pred hCCCCCCEEEEECCcc-cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCC-----CC-----C-CCCCCcc
Q 018606 77 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-----NL-----P-YRSDFGD 140 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~-----~l-----~-~~~~~fD 140 (353)
..+.++.+||=.|+|. |..+ ....+. .+++++.++.-.+.+++.+++.+.. .. .. . .....+|
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~-~~~~~~~~~~~~v~~~~~g~gvD 277 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFN-PTKMRDCLSGEKVMEVTKGWGAD 277 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEc-ccccccccHHHHHHHhcCCCCCC
Confidence 4567888888878754 2222 125566 7999999998888888877643321 11 10 0 1234589
Q ss_pred EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+|+.... . ....+.++.+.|+++|+++...
T Consensus 278 vvld~~g-----~---~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 278 IQVEAAG-----A---PPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred EEEECCC-----C---cHHHHHHHHHHHHcCCEEEEEC
Confidence 8886421 2 1346778889999999998764
No 405
>PRK06182 short chain dehydrogenase; Validated
Probab=46.51 E-value=77 Score=28.89 Aligned_cols=69 Identities=13% Similarity=0.036 Sum_probs=47.4
Q ss_pred CCEEEEECCcccc--cc-c--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-----C-----CCCCccEEEech
Q 018606 82 GSLVLDAGCGNGK--YL-G--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-----Y-----RSDFGDAAISIA 146 (353)
Q Consensus 82 ~~~VLDvGCG~G~--~~-~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-----~-----~~~~fD~Vi~~~ 146 (353)
+.++|=.|++.|. .+ . ...+..|++++.++.-++.....++.++.+|+.+.. + ..+..|++|...
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~a 82 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNA 82 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4678888876554 22 1 256789999999988776555557889999987632 1 123679999877
Q ss_pred hhhh
Q 018606 147 VLHH 150 (353)
Q Consensus 147 vl~h 150 (353)
.+..
T Consensus 83 g~~~ 86 (273)
T PRK06182 83 GYGS 86 (273)
T ss_pred CcCC
Confidence 6543
No 406
>PRK10083 putative oxidoreductase; Provisional
Probab=46.40 E-value=1.1e+02 Score=28.69 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=56.9
Q ss_pred CCCCCCEEEEECCcc-ccccc---c-CCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CC--CCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---L-NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP----YR--SDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~-~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----~~--~~~fD~Vi~~ 145 (353)
.+.++.+||=.|+|. |..+. . ..+. .++++|.++.-++.+++.+++.+.. ..... +. ...+|+|+..
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~g~~~d~vid~ 235 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVIN-NAQEPLGEALEEKGIKPTLIIDA 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEec-CccccHHHHHhcCCCCCCEEEEC
Confidence 567888999899753 22221 1 2365 5889999999999988877643321 11111 11 1124566653
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
. .. ...+.+..+.|+++|+++..-.
T Consensus 236 ~-----g~----~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 236 A-----CH----PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred C-----CC----HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 11 2467888899999999987643
No 407
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=46.39 E-value=15 Score=32.27 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.0
Q ss_pred HHHHHHHHHhccccCcEEEEEEcCCC
Q 018606 157 RKKAIEELVRVVKKGSLVLITVWAVE 182 (353)
Q Consensus 157 ~~~~l~el~rvLkpgG~lli~~~~~~ 182 (353)
....+.++.|+|||||.+++..-...
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~ 60 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDRE 60 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCE
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchh
Confidence 56789999999999999988864433
No 408
>PLN02702 L-idonate 5-dehydrogenase
Probab=46.38 E-value=1.2e+02 Score=29.09 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=57.6
Q ss_pred hCCCCCCEEEEECCcc-cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe-eCC--CCC--------CCCCCcc
Q 018606 77 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVA-DAV--NLP--------YRSDFGD 140 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~-D~~--~l~--------~~~~~fD 140 (353)
..+.++.+||=+|+|. |..+ ....++ .++++|.++...+.+++.+.+.... +.. .++ .....+|
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 256 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGID 256 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCC
Confidence 3566788888888752 3222 123454 5889999998888888776644321 111 110 1123578
Q ss_pred EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+|+... .. ...+..+.+.|+++|+++..-
T Consensus 257 ~vid~~-----g~----~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 257 VSFDCV-----GF----NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred EEEECC-----CC----HHHHHHHHHHHhcCCEEEEEc
Confidence 887642 11 235788889999999987654
No 409
>PRK08324 short chain dehydrogenase; Validated
Probab=46.24 E-value=75 Score=33.81 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=59.2
Q ss_pred CCCEEEEECCcccc--ccc---cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC-----CC-----CCCcc
Q 018606 81 SGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP-----YR-----SDFGD 140 (353)
Q Consensus 81 ~~~~VLDvGCG~G~--~~~---~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~-----~~-----~~~fD 140 (353)
++.+||=.|++.|. .+. ...|..|+.+|.+..-++.+... ++.++.+|+.+.. +. -+.+|
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 45789999975443 322 24577999999998776555443 5667888887532 10 13579
Q ss_pred EEEechhhhhcCC-----hhH-----------HHHHHHHHHhcccc---CcEEEEEE
Q 018606 141 AAISIAVLHHLST-----ESR-----------RKKAIEELVRVVKK---GSLVLITV 178 (353)
Q Consensus 141 ~Vi~~~vl~h~~~-----~e~-----------~~~~l~el~rvLkp---gG~lli~~ 178 (353)
+||....+..... .+. ...+++.+.+.++. ||.+++..
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 9988775432211 000 23455666666665 57766653
No 410
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=44.66 E-value=1.4e+02 Score=27.51 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=57.0
Q ss_pred hCCCCCCEEEEECCcccc--ccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606 77 NSLPSGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 143 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~--~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi 143 (353)
..+.++.+||=.|.+.|. .+. ...+..++.++.++.-.+.++..+..... +..... .....+|+++
T Consensus 162 ~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i 240 (342)
T cd08266 162 ARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVI-DYRKEDFVREVRELTGKRGVDVVV 240 (342)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEE-ecCChHHHHHHHHHhCCCCCcEEE
Confidence 356678899988886543 322 25677899999998887777655443221 222111 1234578887
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
..... ..+..+.+.|+++|.++...
T Consensus 241 ~~~g~----------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 241 EHVGA----------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred ECCcH----------HHHHHHHHHhhcCCEEEEEe
Confidence 75431 23566778889999987664
No 411
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=44.32 E-value=46 Score=32.90 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=35.6
Q ss_pred HHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~ 120 (353)
.+..-+-.+.++++||-|.+|-...+.. ....+|++||+++..+...+-+
T Consensus 25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 25 RVDMEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred HHHHHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHH
Confidence 3444445788999999998776665543 3336999999999877665543
No 412
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=43.98 E-value=56 Score=30.83 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=51.3
Q ss_pred EEEEECCcc-cccc-c--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHH
Q 018606 84 LVLDAGCGN-GKYL-G--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159 (353)
Q Consensus 84 ~VLDvGCG~-G~~~-~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~ 159 (353)
+|-=||+|. |..+ . ...+..|++.|.++..++.+.+.+.... .+...+.-.....|+|++. +++. ....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~-~s~~~~~~~~~~~dvIi~~-----vp~~-~~~~ 74 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGV-ANLRELSQRLSAPRVVWVM-----VPHG-IVDA 74 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCccc-CCHHHHHhhcCCCCEEEEE-----cCch-HHHH
Confidence 466688886 3322 2 2567899999999998887776543221 1111111011234887775 3333 2567
Q ss_pred HHHHHHhccccCcEEEEEE
Q 018606 160 AIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 160 ~l~el~rvLkpgG~lli~~ 178 (353)
++.++...|++| .++|..
T Consensus 75 v~~~l~~~l~~g-~ivid~ 92 (298)
T TIGR00872 75 VLEELAPTLEKG-DIVIDG 92 (298)
T ss_pred HHHHHHhhCCCC-CEEEEC
Confidence 788888888877 444543
No 413
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=43.93 E-value=26 Score=33.43 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.4
Q ss_pred HHHHHHHHHhccccCcEEEEEEcCC
Q 018606 157 RKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 157 ~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+..+|....++|+|||+|+|.+|..
T Consensus 223 L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 223 LEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHHHHhhCCCcEEEEEEecc
Confidence 6789999999999999999988764
No 414
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=43.02 E-value=1.5e+02 Score=28.69 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=57.4
Q ss_pred CCCCCCEEEEECC-c-ccccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC--------------------
Q 018606 78 SLPSGSLVLDAGC-G-NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-------------------- 132 (353)
Q Consensus 78 ~l~~~~~VLDvGC-G-~G~~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-------------------- 132 (353)
.+.++.+||=.|+ | .|..+ ....+..+++++.++...+.+++.+++.+.- ....
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVIN-RRDFDHWGVLPDVNSEAYTAWTKE 268 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEc-ccccccccccccccchhhhhhhhc
Confidence 4567889999997 2 23332 2356778889999999999998876533221 1000
Q ss_pred ---------CC-CCC-CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 133 ---------PY-RSD-FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 133 ---------~~-~~~-~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.+ ... .+|+|+.... ...+.+..+.|+++|+++....
T Consensus 269 ~~~~~~~v~~l~~~~~g~d~vid~~g----------~~~~~~~~~~l~~~G~~v~~g~ 316 (393)
T cd08246 269 ARRFGKAIWDILGGREDPDIVFEHPG----------RATFPTSVFVCDRGGMVVICAG 316 (393)
T ss_pred cchHHHHHHHHhCCCCCCeEEEECCc----------hHhHHHHHHHhccCCEEEEEcc
Confidence 00 112 4788876421 1246667889999999987643
No 415
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=42.89 E-value=1.1e+02 Score=28.38 Aligned_cols=87 Identities=16% Similarity=0.093 Sum_probs=49.8
Q ss_pred EEEEECCcccc-ccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeC--------C-CCCCCCCCccEEEechhhhh
Q 018606 84 LVLDAGCGNGK-YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADA--------V-NLPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 84 ~VLDvGCG~G~-~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~--------~-~l~~~~~~fD~Vi~~~vl~h 150 (353)
+|+=+|+|.-. .+. ...+..|+.++. +..++..++.++.+...+. . ........+|+|+..--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk--- 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK--- 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec---
Confidence 57788999744 322 244678999998 6666666665544322110 0 01111256787766421
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
... ...++.++...+.++..++..
T Consensus 78 --~~~-~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 78 --AYQ-LDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred --ccC-HHHHHHHHHhhcCCCCEEEEe
Confidence 111 466788888888777554433
No 416
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.39 E-value=1.3e+02 Score=26.57 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=57.4
Q ss_pred CCCEEEEECCcccc--ccc---cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC-----C-----CCCCcc
Q 018606 81 SGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP-----Y-----RSDFGD 140 (353)
Q Consensus 81 ~~~~VLDvGCG~G~--~~~---~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~-----~-----~~~~fD 140 (353)
.+.+||=.|++.|. .+. ...+..|++++.++.-+..+.+. ++.++.+|+.+.. + .-+..|
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 35689999986554 221 25678999999988765444221 4677888887532 0 013457
Q ss_pred EEEechhhhhcCChh--------------HHHHHHHHHHhccccCcEEEEEEc
Q 018606 141 AAISIAVLHHLSTES--------------RRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 141 ~Vi~~~vl~h~~~~e--------------~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.++............ -...+++.+...++.+|.+++..-
T Consensus 84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 777655322111100 022345566666777887776653
No 417
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=42.27 E-value=1.9e+02 Score=26.09 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=54.3
Q ss_pred CCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCC-eEEEeeCCCCC--CCCCCccEEEechhhh
Q 018606 78 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGH-EVLVADAVNLP--YRSDFGDAAISIAVLH 149 (353)
Q Consensus 78 ~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i-~~~~~D~~~l~--~~~~~fD~Vi~~~vl~ 149 (353)
.+.++.+||=.|+. .|..+. ...+..++.++.+. ..+.+++.+. .++........ .....+|+++...
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~--- 216 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTV--- 216 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECC---
Confidence 46788899988862 233321 25677888888777 6777765553 22221111111 2234578887632
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.. ..+..+.+.|+++|.++....
T Consensus 217 --~~-----~~~~~~~~~l~~~g~~v~~g~ 239 (309)
T cd05289 217 --GG-----ETLARSLALVKPGGRLVSIAG 239 (309)
T ss_pred --ch-----HHHHHHHHHHhcCcEEEEEcC
Confidence 22 256777888999999876643
No 418
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=42.20 E-value=98 Score=28.78 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=49.7
Q ss_pred EEEEECCcc-cc-ccc--cCCCcEEEEEeCCHHHHHHHHHcCC-eEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHH
Q 018606 84 LVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 158 (353)
Q Consensus 84 ~VLDvGCG~-G~-~~~--~~~~~~v~gvD~S~~~l~~a~~~~i-~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~ 158 (353)
+|.=||+|. |. ++. ...+..|+++|.++..++.+.+.+. .....+.. . -...|+|+..--.. ...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~---~-~~~aDlVilavp~~------~~~ 71 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLS---L-LKDCDLVILALPIG------LLL 71 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHh---H-hcCCCEEEEcCCHH------HHH
Confidence 466678875 33 322 2456799999999999888887753 11111111 1 23468888764322 134
Q ss_pred HHHHHHHhccccCcEEEEE
Q 018606 159 KAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 159 ~~l~el~rvLkpgG~lli~ 177 (353)
.+++++...++++ .+++.
T Consensus 72 ~~~~~l~~~l~~~-~ii~d 89 (279)
T PRK07417 72 PPSEQLIPALPPE-AIVTD 89 (279)
T ss_pred HHHHHHHHhCCCC-cEEEe
Confidence 5678888888776 44443
No 419
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=42.14 E-value=28 Score=33.31 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=22.0
Q ss_pred HHHHHHHHHhccccCcEEEEEEcCC
Q 018606 157 RKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 157 ~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+..+|..+..+|+|||++++..|..
T Consensus 219 L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 219 LEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCc
Confidence 6788999999999999999988764
No 420
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=41.95 E-value=24 Score=33.08 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=58.3
Q ss_pred EEEEECCccccccc-c-CCCc-EEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCC---CCCCCccEEEechhh--------
Q 018606 84 LVLDAGCGNGKYLG-L-NPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAISIAVL-------- 148 (353)
Q Consensus 84 ~VLDvGCG~G~~~~-~-~~~~-~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~---~~~~~fD~Vi~~~vl-------- 148 (353)
+++|+-||-|.+.. + ..|. .+.++|+++..++.-+.+ . ....+|+..+. ++. .+|+++...-=
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTST
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEecccc
Confidence 68999999998743 2 3344 789999999998887776 5 88899998875 443 58998873211
Q ss_pred -hhcCChhH-HHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606 149 -HHLSTESR-RKKAIEELVRVVKKGSLVLITVWAVEQ 183 (353)
Q Consensus 149 -~h~~~~e~-~~~~l~el~rvLkpgG~lli~~~~~~~ 183 (353)
..+.+... +-..+-++.+.++|.-.++=.+.....
T Consensus 80 ~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~ 116 (335)
T PF00145_consen 80 RKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLS 116 (335)
T ss_dssp HHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGT
T ss_pred ccccccccchhhHHHHHHHhhccceEEEecccceeec
Confidence 11222110 222334444556787555544554443
No 421
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=41.23 E-value=1.1e+02 Score=29.41 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=58.6
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe-eCCCC-----CCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVA-DAVNL-----PYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l-----~~~~~~fD~Vi~~~ 146 (353)
.+.++.+||=.|+|. |..+. ...|. .++++|.++...+.+++.+.+.+.. +-..+ .+....+|+|+...
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~ 262 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTT 262 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECC
Confidence 456788898888754 33321 24566 6999999999998888776543321 11110 01134588888642
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
. . ...+..+.+.|+++|+++...
T Consensus 263 g-----~----~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 263 G-----V----PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred C-----C----cHHHHHHHHHhccCCEEEEeC
Confidence 1 1 235778889999999988754
No 422
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=40.71 E-value=2.3e+02 Score=26.48 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=58.2
Q ss_pred HhCCCCCCEEEEECCcc-ccccc---cC-CCcEEEEEeCCHHHHHHHHHcCCeEEEeeC--CCCC--C--CCCCccEEEe
Q 018606 76 LNSLPSGSLVLDAGCGN-GKYLG---LN-PDCFFVGCDISPSLIKICVDRGHEVLVADA--VNLP--Y--RSDFGDAAIS 144 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~-G~~~~---~~-~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~--~~l~--~--~~~~fD~Vi~ 144 (353)
...+.++.+||=.|+|. |..+. .. .+..+++++.+++..+.+++.+++.+...- .... + ..+.+|+++.
T Consensus 157 ~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~ 236 (338)
T PRK09422 157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVV 236 (338)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEE
Confidence 34677888999999653 22221 22 478999999999999999777764432211 1100 0 0123564332
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.. . . ...+..+.+.|+++|+++....
T Consensus 237 ~~----~-~----~~~~~~~~~~l~~~G~~v~~g~ 262 (338)
T PRK09422 237 TA----V-A----KAAFNQAVDAVRAGGRVVAVGL 262 (338)
T ss_pred eC----C-C----HHHHHHHHHhccCCCEEEEEee
Confidence 21 1 1 2467888999999999887643
No 423
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=39.58 E-value=2e+02 Score=27.20 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=57.1
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~~~~fD~Vi~~ 145 (353)
.+.++.+||-.|+|. |..+. ...+. .|++++.++...+.+++.+++.+.. ..... ...+.+|+++..
T Consensus 172 ~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~d~vid~ 250 (350)
T cd08240 172 PLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVN-GSDPDAAKRIIKAAGGGVDAVIDF 250 (350)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEec-CCCccHHHHHHHHhCCCCcEEEEC
Confidence 344678888888753 33321 24566 7899999998888887777643322 11111 111257888764
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.. . ...+..+.+.|+++|+++...
T Consensus 251 ~g-----~----~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 251 VN-----N----SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CC-----C----HHHHHHHHHHhhcCCeEEEEC
Confidence 21 1 245788899999999988653
No 424
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=38.79 E-value=2.8e+02 Score=25.95 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=59.5
Q ss_pred CCCCCCEEEEECCcccc--ccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606 78 SLPSGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 144 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~--~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~ 144 (353)
.+.++.+||=.|+|++. .+. ...+..++++..++.-.+.+++.+++.+.. ..... .....+|+++.
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~~~vd~vl~ 240 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVD-FKKSDDVEAVKELTGGGGAHAVVV 240 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEc-CCCccHHHHHHHHhcCCCCCEEEE
Confidence 56778899988887543 322 255779999999988888776656533221 11111 12345888875
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
... -...+..+.+.|+++|+++...+.
T Consensus 241 ~~~---------~~~~~~~~~~~l~~~g~~v~~g~~ 267 (341)
T cd08297 241 TAV---------SAAAYEQALDYLRPGGTLVCVGLP 267 (341)
T ss_pred cCC---------chHHHHHHHHHhhcCCEEEEecCC
Confidence 221 124567788999999999877543
No 425
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.07 E-value=1.9e+02 Score=27.16 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=57.2
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCC-C----CC--CCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-N----LP--YRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~-~----l~--~~~~~fD~Vi~ 144 (353)
..+.++.+||=.|||. |..+. ...+. .+++++.++.-.+.+++.+.+.+...-. . +. .....+|+++.
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~ 243 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLE 243 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEE
Confidence 3556777777688763 33321 24565 5899999887777777776543222111 0 00 12335788875
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.. .. ...+..+.+.|+++|++++...
T Consensus 244 ~~-----g~----~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 244 CV-----GT----QESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred CC-----CC----HHHHHHHHHhhccCCEEEEecc
Confidence 42 12 3468888999999999886543
No 426
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=38.07 E-value=1.9e+02 Score=27.00 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=57.7
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCC-cEEEEEeCCHHHHHHHHHcCCeEEEe-eCC---CC-C-CCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPD-CFFVGCDISPSLIKICVDRGHEVLVA-DAV---NL-P-YRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~---~l-~-~~~~~fD~Vi~~~ 146 (353)
.+.++.+||=.|+|. |..+. ...+ ..+++++.++...+.+++.+++.+.. +-. .+ . .....+|+|+...
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~ 243 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFV 243 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcC
Confidence 456788899888664 22221 1344 78999999998888887666533221 110 00 0 1223588888642
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
. . ...+.++.+.|+++|+++.....
T Consensus 244 g-----~----~~~~~~~~~~l~~~g~~i~~g~~ 268 (340)
T cd05284 244 G-----S----DETLALAAKLLAKGGRYVIVGYG 268 (340)
T ss_pred C-----C----HHHHHHHHHHhhcCCEEEEEcCC
Confidence 1 1 24577888999999998876543
No 427
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=37.68 E-value=28 Score=33.35 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=22.3
Q ss_pred HHHHHHHHHhccccCcEEEEEEcCC
Q 018606 157 RKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 157 ~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+..+|..+..+|+|||+++|.+|..
T Consensus 220 L~~~L~~a~~~L~~gGrl~VISFHS 244 (310)
T PF01795_consen 220 LERGLEAAPDLLKPGGRLVVISFHS 244 (310)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecc
Confidence 6788999999999999999998763
No 428
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=37.58 E-value=68 Score=29.05 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=44.5
Q ss_pred EEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHH--cCCeEEEeeCCCCC----CCCCCccEEEec
Q 018606 84 LVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVD--RGHEVLVADAVNLP----YRSDFGDAAISI 145 (353)
Q Consensus 84 ~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~--~~i~~~~~D~~~l~----~~~~~fD~Vi~~ 145 (353)
.++=+|||. |..+. ...+..|+.+|..+..++.... .....+++|..+.. ..-..+|+++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 577789986 44332 2567899999999999877443 57889999988732 223567888774
No 429
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=37.52 E-value=2.7e+02 Score=25.88 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=54.7
Q ss_pred CCEEEEECCc--cccccc---cCC-CcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCCccEEEechhhhh
Q 018606 82 GSLVLDAGCG--NGKYLG---LNP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 82 ~~~VLDvGCG--~G~~~~---~~~-~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----~~~~~~fD~Vi~~~vl~h 150 (353)
+.+||=.|+. .|..+. ... +..|+++..++...+.+++.+.+.+......+ ....+.+|+|+...
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~---- 224 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLT---- 224 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcC----
Confidence 7888888863 344432 133 78999999988888888776664433201111 02234578887531
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
.. ...+..+.+.|+++|+++..
T Consensus 225 -~~----~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 225 -HT----DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred -Cc----HHHHHHHHHHhccCCEEEEE
Confidence 11 24577888999999998754
No 430
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=37.31 E-value=37 Score=32.34 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.1
Q ss_pred HHHHHHHHHhccccCcEEEEEEcCC
Q 018606 157 RKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 157 ~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
+..+|..+..+|+|||+++|.+|..
T Consensus 215 L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 215 LERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCc
Confidence 6788999999999999999998764
No 431
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=37.20 E-value=72 Score=31.64 Aligned_cols=64 Identities=23% Similarity=0.124 Sum_probs=45.5
Q ss_pred CEEEEECCcc-ccccc----cCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCC---CCCCccEEEech
Q 018606 83 SLVLDAGCGN-GKYLG----LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPY---RSDFGDAAISIA 146 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~~----~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~---~~~~fD~Vi~~~ 146 (353)
..||=||||. |..+. .....+|+..|.|...++.+... +++..+.|+.+.+- --..+|+||+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4689999975 44322 23447999999998888877666 58899999987641 013458988865
No 432
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=37.11 E-value=3.1e+02 Score=25.29 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=57.6
Q ss_pred hCCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---------CCCCCccEE
Q 018606 77 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---------YRSDFGDAA 142 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~---------~~~~~fD~V 142 (353)
..+.++.+||=.|++ .|..+. ...+..++.+..++...+.+++.+++.+. +..... .....+|++
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~ 214 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILI-RYPDEEGFAPKVKKLTGEKGVNLV 214 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEE-ecCChhHHHHHHHHHhCCCCceEE
Confidence 356778889888853 344332 25667777788899988888766653222 111110 123457888
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+.... ...+..+.+.|+++|+++...
T Consensus 215 i~~~~----------~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 215 LDCVG----------GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred EECCc----------hHHHHHHHHHhccCCeEEEEe
Confidence 76431 235677888999999988654
No 433
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=36.69 E-value=43 Score=28.42 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=48.4
Q ss_pred EEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHH
Q 018606 84 LVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159 (353)
Q Consensus 84 ~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~ 159 (353)
+|-=||+|. |.-+. ...+..|++.|+++..++...+.+..... +..++ -...|+|++. +++.+....
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~-s~~e~---~~~~dvvi~~-----v~~~~~v~~ 73 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVAD-SPAEA---AEQADVVILC-----VPDDDAVEA 73 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEES-SHHHH---HHHBSEEEE------SSSHHHHHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhh-hhhhH---hhcccceEee-----cccchhhhh
Confidence 456678876 33221 25678999999999988888777633221 11111 1234888775 555554667
Q ss_pred HHHH--HHhccccCcEEE
Q 018606 160 AIEE--LVRVVKKGSLVL 175 (353)
Q Consensus 160 ~l~e--l~rvLkpgG~ll 175 (353)
++.. +...|++|..++
T Consensus 74 v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 74 VLFGENILAGLRPGKIII 91 (163)
T ss_dssp HHHCTTHGGGS-TTEEEE
T ss_pred hhhhhHHhhccccceEEE
Confidence 7777 777787765443
No 434
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.24 E-value=2.9e+02 Score=25.22 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=53.0
Q ss_pred CCCCCCEEEEECCc--ccccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-eCCCC---CCCCCCccEEEechhh
Q 018606 78 SLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNL---PYRSDFGDAAISIAVL 148 (353)
Q Consensus 78 ~l~~~~~VLDvGCG--~G~~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l---~~~~~~fD~Vi~~~vl 148 (353)
.+.++.+||-.|+. .|..+ ....++++++++.+ ...+.+++.++..+.. ..... ....+.+|+++....-
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 218 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGN 218 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCCc
Confidence 46788999999983 34433 23566789998855 6677776666532211 11111 1233468988864321
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
. .......+ ..|+++|+++.....
T Consensus 219 ----~---~~~~~~~~-~~l~~~g~~i~~g~~ 242 (319)
T cd08267 219 ----S---PFSLYRAS-LALKPGGRYVSVGGG 242 (319)
T ss_pred ----h---HHHHHHhh-hccCCCCEEEEeccc
Confidence 1 11222222 238999998877543
No 435
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=35.44 E-value=2e+02 Score=26.98 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=56.6
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEe-eCCCC-----C-CCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVA-DAVNL-----P-YRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l-----~-~~~~~fD~Vi~~ 145 (353)
.+.++.+||=.|+|. |..+. ...+.. +++++.++...+.+++.+++.+.. +-..+ . .....+|+|+..
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~ 241 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVA 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEEC
Confidence 567888888888752 33321 245667 899999998888876655533221 11110 0 122347888864
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.. . ...+..+.+.|+++|+++...
T Consensus 242 ~~-----~----~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 242 TG-----S----PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CC-----C----hHHHHHHHHHhhcCCEEEEEe
Confidence 22 1 235777788999999988654
No 436
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=35.41 E-value=2.5e+02 Score=25.43 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=58.3
Q ss_pred hCCCCCCEEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-eCCCC-----C-CCCCCccEEEe
Q 018606 77 NSLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNL-----P-YRSDFGDAAIS 144 (353)
Q Consensus 77 ~~l~~~~~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l-----~-~~~~~fD~Vi~ 144 (353)
..+.++.+||=.|+ | .|..+. ...+..+++++.++...+.+++.+++.+.. +-..+ . .....+|+++.
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~ 211 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYD 211 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEE
Confidence 35677889998885 2 333322 256788999999998888887766533321 11111 0 12345888876
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.. .. ..+....+.|+++|+++....
T Consensus 212 ~~-----~~-----~~~~~~~~~l~~~g~~v~~g~ 236 (320)
T cd05286 212 GV-----GK-----DTFEGSLDSLRPRGTLVSFGN 236 (320)
T ss_pred CC-----Cc-----HhHHHHHHhhccCcEEEEEec
Confidence 42 11 245667788999999886643
No 437
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=35.02 E-value=14 Score=28.85 Aligned_cols=12 Identities=42% Similarity=1.032 Sum_probs=10.1
Q ss_pred EEEECCcccccc
Q 018606 85 VLDAGCGNGKYL 96 (353)
Q Consensus 85 VLDvGCG~G~~~ 96 (353)
-+|||||.|.-.
T Consensus 6 NIDIGcG~GNTm 17 (124)
T PF07101_consen 6 NIDIGCGAGNTM 17 (124)
T ss_pred ccccccCCCcch
Confidence 489999999864
No 438
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=34.96 E-value=1.3e+02 Score=27.38 Aligned_cols=86 Identities=9% Similarity=0.057 Sum_probs=52.3
Q ss_pred CCCEEEEECCcccccc------ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606 81 SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~~------~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
.+.+||=||.|.-..- .......|++-++++++.+.+....++++..++..-.+ ..+++|++.. .++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl--~g~~LViaAT-----dD~ 96 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFI--KDKHLIVIAT-----DDE 96 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHh--CCCcEEEECC-----CCH
Confidence 4679999999986542 22334566666999999888877778888766654333 2346666642 332
Q ss_pred hHHHHHHHHHHhccccCcEEEEE
Q 018606 155 SRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 155 e~~~~~l~el~rvLkpgG~lli~ 177 (353)
++-..+.+..+.-|.++..
T Consensus 97 ----~vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 97 ----KLNNKIRKHCDRLYKLYID 115 (223)
T ss_pred ----HHHHHHHHHHHHcCCeEEE
Confidence 3344444444444444443
No 439
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=34.55 E-value=2.5e+02 Score=27.80 Aligned_cols=65 Identities=25% Similarity=0.238 Sum_probs=45.5
Q ss_pred CCCEEEEECCcc-ccccc--c-CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCC----CCCCCccEEEec
Q 018606 81 SGSLVLDAGCGN-GKYLG--L-NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLP----YRSDFGDAAISI 145 (353)
Q Consensus 81 ~~~~VLDvGCG~-G~~~~--~-~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~----~~~~~fD~Vi~~ 145 (353)
...+++=+|+|. |..+. + ..+..++.+|.+++.++.+++. ++.++.+|..+.. ..-..+|+|++.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 346888898875 33221 1 4578999999999998888775 6788999987532 223467877764
No 440
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.33 E-value=63 Score=31.20 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=57.5
Q ss_pred hCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHcCC-eEEE-eeCCCCC-------CCCCCccEE
Q 018606 77 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGH-EVLV-ADAVNLP-------YRSDFGDAA 142 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~~i-~~~~-~D~~~l~-------~~~~~fD~V 142 (353)
+.+.||+++.=+|+|.=.++. .....+++|+|+++.-.+.|++.+. +|+. .|... | .-++-+|..
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~-~i~evi~EmTdgGvDys 266 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKK-PIQEVIIEMTDGGVDYS 266 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccc-cHHHHHHHHhcCCceEE
Confidence 456788888888888644321 2334599999999999999999865 3332 13333 2 224555655
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccccC-cEEEEEE
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 178 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~ 178 (353)
+-. +-+ ..++++.....+.| |.-++.-
T Consensus 267 fEc-----~G~----~~~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 267 FEC-----IGN----VSTMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred EEe-----cCC----HHHHHHHHHHhhcCCCeEEEEE
Confidence 422 222 34566666667787 7766553
No 441
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=34.29 E-value=33 Score=32.76 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=58.2
Q ss_pred CCCCCCEEEEECCccccccc-c--CCC-cEEEEEeCCHHHHHHHHHc----CC----eEEEeeCCCCCCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGNGKYLG-L--NPD-CFFVGCDISPSLIKICVDR----GH----EVLVADAVNLPYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~-~--~~~-~~v~gvD~S~~~l~~a~~~----~i----~~~~~D~~~l~~~~~~fD~Vi~~ 145 (353)
-...+..|+|+=+|-|.|+- . ..+ ..|.++|.++..++..++. ++ .++.+|.... -++...|-|...
T Consensus 191 ~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnLG 269 (351)
T KOG1227|consen 191 TSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNLG 269 (351)
T ss_pred cccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheeec
Confidence 33566899999999999864 2 334 4999999999998887765 22 3344554433 335556666543
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcE-EEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSL-VLIT 177 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~-lli~ 177 (353)
-+++. ++-..-...+|||.|- ++-.
T Consensus 270 ----LlPSs---e~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 270 ----LLPSS---EQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred ----ccccc---ccchHHHHHHhhhcCCcEEEE
Confidence 34553 3344455677777655 5444
No 442
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=34.26 E-value=68 Score=30.68 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=54.3
Q ss_pred HHHHHHHHHc--CCeEEEeeCCCCCC--CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 111 PSLIKICVDR--GHEVLVADAVNLPY--RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 111 ~~~l~~a~~~--~i~~~~~D~~~l~~--~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+..-+.++.+ .+.++.+|+..+-- +.+..|.++...+=.++++.. ...++.++.|-+.+|.++++-+-+
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~q-ln~lws~isrta~~gA~VifRtaa 368 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQ-LNSLWSEISRTAEAGARVIFRTAA 368 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccch-HHHHHHHHhhccCCCcEEEEeccc
Confidence 4444444443 58888999887543 568899999999999998765 789999999999999999887654
No 443
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=34.11 E-value=2e+02 Score=27.34 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=57.3
Q ss_pred CEEEEECCcc-cccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeC--CC------CCCCCCCccEEEechhhhh
Q 018606 83 SLVLDAGCGN-GKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADA--VN------LPYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~--~~------l~~~~~~fD~Vi~~~vl~h 150 (353)
++|+=+|+|. |.++.. ..+..|+.+-.++. ++..++.++.+...+- .. .+.....+|+|+..-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v---- 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV---- 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe----
Confidence 3678899986 555431 33457777777666 7777777766654443 11 112234689888742
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
.... ...+++.+...+++...+++.--..
T Consensus 76 -Ka~q-~~~al~~l~~~~~~~t~vl~lqNG~ 104 (307)
T COG1893 76 -KAYQ-LEEALPSLAPLLGPNTVVLFLQNGL 104 (307)
T ss_pred -cccc-HHHHHHHhhhcCCCCcEEEEEeCCC
Confidence 2111 5789999999999998766654333
No 444
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.93 E-value=2.4e+02 Score=28.46 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=69.7
Q ss_pred CCCEEEEECC-ccccccc----------cCCCcEEEEEeCCH-HHHHHHHH----cCCeEEEeeCCCCC----------C
Q 018606 81 SGSLVLDAGC-GNGKYLG----------LNPDCFFVGCDISP-SLIKICVD----RGHEVLVADAVNLP----------Y 134 (353)
Q Consensus 81 ~~~~VLDvGC-G~G~~~~----------~~~~~~v~gvD~S~-~~l~~a~~----~~i~~~~~D~~~l~----------~ 134 (353)
+...||=+|= |+|+.+. .....-++++|.-. .+++..+. .++.|+..+-..-| +
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 4567888885 7777431 13445788999754 34444443 37888776544444 3
Q ss_pred CCCCccEEEechhh-hhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccch
Q 018606 135 RSDFGDAAISIAVL-HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 186 (353)
Q Consensus 135 ~~~~fD~Vi~~~vl-~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~ 186 (353)
....||+||.--.= +|+ +.+ +..-+.++.++++|.=.|++.+-..-|.-.
T Consensus 179 k~~~~DvvIvDTAGRl~i-de~-Lm~El~~Ik~~~~P~E~llVvDam~GQdA~ 229 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHI-DEE-LMDELKEIKEVINPDETLLVVDAMIGQDAV 229 (451)
T ss_pred HHcCCCEEEEeCCCcccc-cHH-HHHHHHHHHhhcCCCeEEEEEecccchHHH
Confidence 35678999885543 444 433 677889999999999999999877766543
No 445
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=33.60 E-value=2.7e+02 Score=25.42 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=58.2
Q ss_pred HhCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEe-eCCCC------CCCCCCccEEE
Q 018606 76 LNSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVA-DAVNL------PYRSDFGDAAI 143 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l------~~~~~~fD~Vi 143 (353)
...+.++.+||=.|+|. |..+. ...+.. ++++..++...+.+++.++..+.. ....+ ......+|+++
T Consensus 124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vl 203 (312)
T cd08269 124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVI 203 (312)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEE
Confidence 34567788888777542 22221 245677 999998888888777666532221 11111 01224588887
Q ss_pred echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.... . ...+..+.+.|+++|+++.....
T Consensus 204 d~~g-----~----~~~~~~~~~~l~~~g~~~~~g~~ 231 (312)
T cd08269 204 EAVG-----H----QWPLDLAGELVAERGRLVIFGYH 231 (312)
T ss_pred ECCC-----C----HHHHHHHHHHhccCCEEEEEccC
Confidence 6421 1 23577788999999998877543
No 446
>PLN02688 pyrroline-5-carboxylate reductase
Probab=33.59 E-value=1.6e+02 Score=26.97 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=48.9
Q ss_pred EEEEECCcc-cc-ccc--cCCCc----EEEEE-eCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606 84 LVLDAGCGN-GK-YLG--LNPDC----FFVGC-DISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 84 ~VLDvGCG~-G~-~~~--~~~~~----~v~gv-D~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
+|.=||||+ |. ++. ...+. .++++ |.++...+.+.+.++... .+.... -...|+||..- ++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~-~~~~e~---~~~aDvVil~v-----~~- 71 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTA-ASNTEV---VKSSDVIILAV-----KP- 71 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe-CChHHH---HhcCCEEEEEE-----Cc-
Confidence 467789987 33 222 12333 78888 999888777766666432 122111 12358887753 22
Q ss_pred hHHHHHHHHHHhccccCcEEEEEE
Q 018606 155 SRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 155 e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.....++.++...+++|. ++|++
T Consensus 72 ~~~~~vl~~l~~~~~~~~-~iIs~ 94 (266)
T PLN02688 72 QVVKDVLTELRPLLSKDK-LLVSV 94 (266)
T ss_pred HHHHHHHHHHHhhcCCCC-EEEEe
Confidence 225667777777777764 44554
No 447
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=33.54 E-value=1.7e+02 Score=27.51 Aligned_cols=103 Identities=24% Similarity=0.242 Sum_probs=52.6
Q ss_pred HHHHHHHhC----CCCCCEEEEECCccccc-------cc--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCC
Q 018606 70 PKVATFLNS----LPSGSLVLDAGCGNGKY-------LG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRS 136 (353)
Q Consensus 70 ~~~~~~l~~----l~~~~~VLDvGCG~G~~-------~~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~ 136 (353)
.++.+++.. ++..++||-+|+|.-.- ++ +..++.++-.|+.+-.- -.-..+.+|...+.. +
T Consensus 46 tQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS-----Da~~~~~~Dc~t~~~-~ 119 (299)
T PF06460_consen 46 TQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS-----DADQSIVGDCRTYMP-P 119 (299)
T ss_dssp HHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B------SSSEEEES-GGGEEE-S
T ss_pred HHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc-----ccCCceeccccccCC-C
Confidence 345555542 46779999999987552 12 13556777788754211 123456788777664 5
Q ss_pred CCccEEEechh---hhhc-----CChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 137 DFGDAAISIAV---LHHL-----STESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 137 ~~fD~Vi~~~v---l~h~-----~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
..||+||+-.- ..++ ....-..-+..-+..-|+-||.++|-+
T Consensus 120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKi 169 (299)
T PF06460_consen 120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKI 169 (299)
T ss_dssp S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEe
Confidence 78999999543 1111 111112334555667888999999876
No 448
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=33.50 E-value=1.5e+02 Score=29.52 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=50.6
Q ss_pred CEEEEECCccccc-cc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC----------CC--CCCCCccEEEech
Q 018606 83 SLVLDAGCGNGKY-LG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN----------LP--YRSDFGDAAISIA 146 (353)
Q Consensus 83 ~~VLDvGCG~G~~-~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----------l~--~~~~~fD~Vi~~~ 146 (353)
.+|.=||.|.... +. ...|..|+++|+++..++..+...+.+...+... +. ......|+|+.+-
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 3577788886432 22 2567899999999998886443222221111000 00 0012357776642
Q ss_pred hhh----hcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 147 VLH----HLSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 147 vl~----h~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
--- .-++......++..+...|++|-.+++.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ 118 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE 118 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe
Confidence 210 0011123566778888999887665544
No 449
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.49 E-value=2.5e+02 Score=26.66 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=65.2
Q ss_pred CCEEEEECCcccccc-cc--CCCcEEEEEeCCHHHHHHHHHc----C------CeEEEeeCCCCC---------CCCCCc
Q 018606 82 GSLVLDAGCGNGKYL-GL--NPDCFFVGCDISPSLIKICVDR----G------HEVLVADAVNLP---------YRSDFG 139 (353)
Q Consensus 82 ~~~VLDvGCG~G~~~-~~--~~~~~v~gvD~S~~~l~~a~~~----~------i~~~~~D~~~l~---------~~~~~f 139 (353)
-..|+-+|||-=.-+ +. ..+..|.-+|. |+.++.=++. + .+++..|+..-. |....-
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 378999999954432 22 23578888886 4444432222 2 578888988422 334455
Q ss_pred cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
-++|+-+++.+++..+ ..++|..|...+.||-.+++...
T Consensus 172 t~~iaEGLl~YL~~~~-v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 172 TLWIAEGLLMYLPEEA-VDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred eEEEeccccccCCHHH-HHHHHHHHHHhCCCCceEEEecc
Confidence 6889999999998665 78999999999888776666653
No 450
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=33.09 E-value=2.2e+02 Score=24.50 Aligned_cols=95 Identities=15% Similarity=0.043 Sum_probs=59.7
Q ss_pred CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC---CC--CCCCCccEEEechhhhh
Q 018606 79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN---LP--YRSDFGDAAISIAVLHH 150 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~---l~--~~~~~fD~Vi~~~vl~h 150 (353)
..++.+|+=|||=+-..... .++..++-+|+....-....+ .|+.-|... +| + .++||+|++---+
T Consensus 23 ~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~---~F~fyD~~~p~~~~~~l-~~~~d~vv~DPPF-- 96 (162)
T PF10237_consen 23 ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGD---EFVFYDYNEPEELPEEL-KGKFDVVVIDPPF-- 96 (162)
T ss_pred cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCc---ceEECCCCChhhhhhhc-CCCceEEEECCCC--
Confidence 34567999999877553322 466788899988776443211 366666554 22 3 5799999996544
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
+. .+-..+....+.-++++++.+++.+..
T Consensus 97 l~-~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 97 LS-EECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred CC-HHHHHHHHHHHHHHhCccceEEEecHH
Confidence 32 332344555566666888888887643
No 451
>PLN02256 arogenate dehydrogenase
Probab=33.00 E-value=2e+02 Score=27.29 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=50.5
Q ss_pred CCCEEEEECCcc-cc-cccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhH
Q 018606 81 SGSLVLDAGCGN-GK-YLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156 (353)
Q Consensus 81 ~~~~VLDvGCG~-G~-~~~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~ 156 (353)
.+.+|.=||+|. |. ++.. ..+..|+++|.+.. .+.+...++.. ..|...+. ....|+|+..--.. .
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~-~~~~~e~~--~~~aDvVilavp~~------~ 104 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSF-FRDPDDFC--EEHPDVVLLCTSIL------S 104 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCee-eCCHHHHh--hCCCCEEEEecCHH------H
Confidence 446888899986 44 3221 34578999999974 35555556543 12221111 12358887753221 2
Q ss_pred HHHHHHHH-HhccccCcEEEEEEcC
Q 018606 157 RKKAIEEL-VRVVKKGSLVLITVWA 180 (353)
Q Consensus 157 ~~~~l~el-~rvLkpgG~lli~~~~ 180 (353)
...++.++ ...+++|. +++.+-+
T Consensus 105 ~~~vl~~l~~~~l~~~~-iviDv~S 128 (304)
T PLN02256 105 TEAVLRSLPLQRLKRST-LFVDVLS 128 (304)
T ss_pred HHHHHHhhhhhccCCCC-EEEecCC
Confidence 45667777 45577764 5566554
No 452
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=32.94 E-value=2.5e+02 Score=26.32 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=56.8
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCe-EEEeeCCC---------CCCCCCCccE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHE-VLVADAVN---------LPYRSDFGDA 141 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~-~~~~D~~~---------l~~~~~~fD~ 141 (353)
..+.++.+||=.|+|. |..+. ...+. .+++++.++...+.+++.+.+ ++..+-.. .......+|+
T Consensus 157 ~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~ 236 (341)
T cd08262 157 ARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAV 236 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCE
Confidence 4567888888888642 22221 24455 488899999999888877653 22211110 0012345888
Q ss_pred EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
++... .. ...+.++.+.|+++|+++....
T Consensus 237 vid~~-----g~----~~~~~~~~~~l~~~g~~v~~g~ 265 (341)
T cd08262 237 IFECV-----GA----PGLIQQIIEGAPPGGRIVVVGV 265 (341)
T ss_pred EEECC-----CC----HHHHHHHHHHhccCCEEEEECC
Confidence 87642 22 1356777888999999887643
No 453
>PRK08507 prephenate dehydrogenase; Validated
Probab=32.74 E-value=1.2e+02 Score=27.95 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=47.7
Q ss_pred EEEEECCcc-cc-cccc--CCC--cEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHH
Q 018606 84 LVLDAGCGN-GK-YLGL--NPD--CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157 (353)
Q Consensus 84 ~VLDvGCG~-G~-~~~~--~~~--~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~ 157 (353)
+|.=||+|. |. ++.. ..+ ..|+++|.++..++.+.+.++.....+... .. . .|+||..- +... .
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~--~~-~-aD~Vilav-----p~~~-~ 71 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEE--LK-K-CDVIFLAI-----PVDA-I 71 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHH--Hh-c-CCEEEEeC-----cHHH-H
Confidence 466688886 33 3221 223 489999999998888876654211112211 11 2 68888764 2222 4
Q ss_pred HHHHHHHHhccccCcEEEEE
Q 018606 158 KKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 158 ~~~l~el~rvLkpgG~lli~ 177 (353)
..++.++.. +++|. +++.
T Consensus 72 ~~~~~~l~~-l~~~~-iv~d 89 (275)
T PRK08507 72 IEILPKLLD-IKENT-TIID 89 (275)
T ss_pred HHHHHHHhc-cCCCC-EEEE
Confidence 567777777 77765 4444
No 454
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=32.37 E-value=2.4e+02 Score=26.06 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=56.3
Q ss_pred CCCCEEEEECCc--ccccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-----C-CCCCCCccEEEechhh
Q 018606 80 PSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-----L-PYRSDFGDAAISIAVL 148 (353)
Q Consensus 80 ~~~~~VLDvGCG--~G~~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----l-~~~~~~fD~Vi~~~vl 148 (353)
..+.+||=.|+. .|..+ ....+..+++++.++...+.+++.++..+.. ... + .+....+|+|+...
T Consensus 145 ~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~~d~vld~~-- 221 (326)
T cd08289 145 PEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIP-REELQEESIKPLEKQRWAGAVDPV-- 221 (326)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEc-chhHHHHHHHhhccCCcCEEEECC--
Confidence 346688888873 23332 1256778999999999888887776533321 111 0 11234578877542
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
. ...+....+.|+++|+++..-.
T Consensus 222 ---g-----~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 ---G-----GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred ---c-----HHHHHHHHHHhhcCCEEEEEee
Confidence 1 1356778889999999987754
No 455
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=32.25 E-value=42 Score=32.54 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=22.7
Q ss_pred EEEEECCccccc-------cc-cCCCcEEEEEeCCHHHHH
Q 018606 84 LVLDAGCGNGKY-------LG-LNPDCFFVGCDISPSLIK 115 (353)
Q Consensus 84 ~VLDvGCG~G~~-------~~-~~~~~~v~gvD~S~~~l~ 115 (353)
.++=.|.|||.- +. ..++.+|+++|+....+-
T Consensus 214 Di~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~ 253 (362)
T KOG1252|consen 214 DIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVL 253 (362)
T ss_pred CEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceec
Confidence 456667777653 32 488999999999877543
No 456
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=32.23 E-value=2e+02 Score=27.26 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=47.9
Q ss_pred CEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEee------------CCCCCCCCCCccEEEech
Q 018606 83 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVAD------------AVNLPYRSDFGDAAISIA 146 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D------------~~~l~~~~~~fD~Vi~~~ 146 (353)
.+|.=||+|. |..+. ...|..|+++|.++. .+..++.++.+...+ ....+-....+|+|+..-
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence 3578889995 44332 255789999998754 354555554332100 011111124578887643
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVL 175 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~ll 175 (353)
+... ...++..+...++++..++
T Consensus 82 -----k~~~-~~~~~~~l~~~~~~~~iii 104 (341)
T PRK08229 82 -----KSAA-TADAAAALAGHARPGAVVV 104 (341)
T ss_pred -----cCcc-hHHHHHHHHhhCCCCCEEE
Confidence 2222 3567788888887765543
No 457
>PRK08265 short chain dehydrogenase; Provisional
Probab=32.23 E-value=1.7e+02 Score=26.52 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=42.5
Q ss_pred CCEEEEECCcccc--ccc---cCCCcEEEEEeCCHHHHHHH-HHc--CCeEEEeeCCCCC-----CC-----CCCccEEE
Q 018606 82 GSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKIC-VDR--GHEVLVADAVNLP-----YR-----SDFGDAAI 143 (353)
Q Consensus 82 ~~~VLDvGCG~G~--~~~---~~~~~~v~gvD~S~~~l~~a-~~~--~i~~~~~D~~~l~-----~~-----~~~fD~Vi 143 (353)
+.++|=.|++.|. .+. ...|..|+.+|.+..-++.. ++. .+.++.+|+.+.. +. -+..|+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv 85 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILV 85 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 5688888876554 221 25678999999987644433 332 3677888887632 00 13578888
Q ss_pred echhh
Q 018606 144 SIAVL 148 (353)
Q Consensus 144 ~~~vl 148 (353)
.+...
T Consensus 86 ~~ag~ 90 (261)
T PRK08265 86 NLACT 90 (261)
T ss_pred ECCCC
Confidence 87654
No 458
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=31.93 E-value=26 Score=30.07 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=17.0
Q ss_pred eeeeeeeecccccHHHHHhcccC
Q 018606 309 VVYNRYYHVFCDGELERLASDID 331 (353)
Q Consensus 309 ~~~~ryyH~F~~gEL~~l~~~~~ 331 (353)
..+.+|||||..++=+++.+.+|
T Consensus 118 ~~~k~~ChVFes~~Aq~Ia~TIG 140 (156)
T cd01208 118 RTPKXICHVFESDEAQFIAQSIG 140 (156)
T ss_pred cccceeEEEEecCcHHHHHHHHH
Confidence 46789999999998555555554
No 459
>PRK09072 short chain dehydrogenase; Provisional
Probab=31.91 E-value=1.8e+02 Score=26.19 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=44.8
Q ss_pred CCEEEEECCccccc--c-c--cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCC---------CCCCccEE
Q 018606 82 GSLVLDAGCGNGKY--L-G--LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPY---------RSDFGDAA 142 (353)
Q Consensus 82 ~~~VLDvGCG~G~~--~-~--~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~---------~~~~fD~V 142 (353)
+.++|=.|++.|.- + . ...|..|++++.++..++..... .+.++.+|+.+..- .-+..|++
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~l 84 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVL 84 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEE
Confidence 56788888766542 1 1 25678999999998766555432 56788888876320 01457888
Q ss_pred Eechhhh
Q 018606 143 ISIAVLH 149 (353)
Q Consensus 143 i~~~vl~ 149 (353)
+......
T Consensus 85 v~~ag~~ 91 (263)
T PRK09072 85 INNAGVN 91 (263)
T ss_pred EECCCCC
Confidence 8876543
No 460
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=31.73 E-value=37 Score=33.30 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=49.7
Q ss_pred CCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCC---CCCCCCCCccEEEechhhhhcCC
Q 018606 82 GSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAV---NLPYRSDFGDAAISIAVLHHLST 153 (353)
Q Consensus 82 ~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~---~l~~~~~~fD~Vi~~~vl~h~~~ 153 (353)
+.+|+=+|+|. |..+. ...|+.|+++|.++.-++.+... +..+ ..+.. .+.-.-..+|+||....+..-..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v-~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRI-HTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCcee-EeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 45688899985 34322 24567899999998876665544 3222 11111 11100135799987542211111
Q ss_pred hhHHHHHHHHHHhccccCcEEEEE
Q 018606 154 ESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 154 ~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
+.-+-.++.+.++||+.++-.
T Consensus 246 ---p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 246 ---PKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred ---CcCcCHHHHhcCCCCCEEEEE
Confidence 111235566778999775543
No 461
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=31.66 E-value=3.3e+02 Score=25.14 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=56.4
Q ss_pred CCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHH-cCCe-EEEeeCCCC-----CCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVD-RGHE-VLVADAVNL-----PYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~-~~i~-~~~~D~~~l-----~~~~~~fD~Vi~~ 145 (353)
.+.++.+||=.|+. .|..+. ...+..+++++.++...+.+++ .+.. ++..+-..+ ......+|+++..
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~ 221 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDN 221 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEc
Confidence 45678889888842 344332 2567799999999988888877 4542 222111010 0112457888764
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.. ...+....+.|+++|+++...
T Consensus 222 ~g----------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 222 VG----------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred ch----------HHHHHHHHHhcCCCceEEEEe
Confidence 21 136777889999999987654
No 462
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=31.23 E-value=2.1e+02 Score=27.51 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=56.9
Q ss_pred hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCC--C-------CCCCCccEE
Q 018606 77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNL--P-------YRSDFGDAA 142 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l--~-------~~~~~fD~V 142 (353)
..+.++.+||=.|+|. |..+. ...+. .+++++.++...+.+++.+++.+. +.... . +..+.+|+|
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v-~~~~~~~~~~~~l~~~~~~~~d~v 257 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECI-NPRDQDKPIVEVLTEMTDGGVDYA 257 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeec-ccccccchHHHHHHHHhCCCCcEE
Confidence 3567788888888753 22221 24455 588999999988888776653221 11111 0 112457888
Q ss_pred EechhhhhcCChhHHHHHHHHHHhccc-cCcEEEEEE
Q 018606 143 ISIAVLHHLSTESRRKKAIEELVRVVK-KGSLVLITV 178 (353)
Q Consensus 143 i~~~vl~h~~~~e~~~~~l~el~rvLk-pgG~lli~~ 178 (353)
+.... . ...+....+.|+ ++|+++...
T Consensus 258 id~~g-----~----~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 258 FEVIG-----S----ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred EECCC-----C----HHHHHHHHHHhccCCCEEEEEe
Confidence 76421 1 245777888899 999988764
No 463
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=30.98 E-value=2.6e+02 Score=26.03 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=55.6
Q ss_pred CCEEEEECCcc--cccc---ccCCC-cEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCCccEEEechhhhh
Q 018606 82 GSLVLDAGCGN--GKYL---GLNPD-CFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAVLHH 150 (353)
Q Consensus 82 ~~~VLDvGCG~--G~~~---~~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----~~~~~~fD~Vi~~~vl~h 150 (353)
+.+||=.|++. |..+ ....+ ..+++++.++...+.+++.+++.+...-... ....+.+|+++..
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~----- 224 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCL----- 224 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEc-----
Confidence 88899888532 3332 12456 8999999999888888776654332111111 1122457887754
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 151 LSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 151 ~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
... ...+..+.+.|+++|+++...
T Consensus 225 ~~~----~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 225 TDT----DQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred cCc----HHHHHHHHHHhcCCCEEEEec
Confidence 221 246778889999999988764
No 464
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=30.98 E-value=1.3e+02 Score=28.27 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=49.0
Q ss_pred EEEEECCcc-cc-ccc--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHH
Q 018606 84 LVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159 (353)
Q Consensus 84 ~VLDvGCG~-G~-~~~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~ 159 (353)
+|-=||+|. |. ++. ...+..|++.|.++..++.+++.+.... .+...+.-.....|+|+.. +++.+....
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~-~s~~~~~~~~~~advVi~~-----vp~~~~~~~ 75 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITAR-HSLEELVSKLEAPRTIWVM-----VPAGEVTES 75 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeec-CCHHHHHHhCCCCCEEEEE-----ecCchHHHH
Confidence 355678886 33 222 2566789999999988777766554321 1111111001124677664 444433566
Q ss_pred HHHHHHhccccCcEEEEEE
Q 018606 160 AIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 160 ~l~el~rvLkpgG~lli~~ 178 (353)
++..+...+++|- ++|..
T Consensus 76 v~~~i~~~l~~g~-ivid~ 93 (299)
T PRK12490 76 VIKDLYPLLSPGD-IVVDG 93 (299)
T ss_pred HHHHHhccCCCCC-EEEEC
Confidence 6777777787764 44443
No 465
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=30.67 E-value=1.6e+02 Score=28.06 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=49.8
Q ss_pred CCCEEEEECCcc-ccccc---cC-CCcEEEEEeCCHHH-HHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606 81 SGSLVLDAGCGN-GKYLG---LN-PDCFFVGCDISPSL-IKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154 (353)
Q Consensus 81 ~~~~VLDvGCG~-G~~~~---~~-~~~~v~gvD~S~~~-l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~ 154 (353)
++.+|+=+|+|. |..+. .. ....|+.+|.++.- .+.+++.+..+...+ .+.-.-...|+|++.-.-.+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~--~~~~~l~~aDvVi~at~~~~~--- 251 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLD--ELLELLNEADVVISATGAPHY--- 251 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHH--HHHHHHhcCCEEEECCCCCch---
Confidence 678999999986 44321 12 33589999999764 466666555433221 111111346999887543222
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEc
Q 018606 155 SRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 155 e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
...+..+....+.+|.+++..-
T Consensus 252 ---~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 252 ---AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred ---HHHHHHHHhhCCCCCeEEEEeC
Confidence 2333444333333456666543
No 466
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=30.24 E-value=29 Score=30.05 Aligned_cols=84 Identities=21% Similarity=0.179 Sum_probs=47.0
Q ss_pred CCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhh----hhc
Q 018606 80 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVL----HHL 151 (353)
Q Consensus 80 ~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl----~h~ 151 (353)
-.|.+|.=||+|. |.-+. ..-|++|++.|.+......+...++ ...++..+ -...|+|+...-+ +|+
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~--~~~~l~el---l~~aDiv~~~~plt~~T~~l 108 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV--EYVSLDEL---LAQADIVSLHLPLTPETRGL 108 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE--EESSHHHH---HHH-SEEEE-SSSSTTTTTS
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc--eeeehhhh---cchhhhhhhhhcccccccee
Confidence 4578999999996 55432 2557799999999987653333332 22222221 1235777765432 333
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEE
Q 018606 152 STESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 152 ~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
-+ ++....+|+|.+ +|.
T Consensus 109 i~--------~~~l~~mk~ga~-lvN 125 (178)
T PF02826_consen 109 IN--------AEFLAKMKPGAV-LVN 125 (178)
T ss_dssp BS--------HHHHHTSTTTEE-EEE
T ss_pred ee--------eeeeeccccceE-EEe
Confidence 33 335566777754 444
No 467
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=30.13 E-value=1.8e+02 Score=27.34 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=49.2
Q ss_pred EEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEE---------eeC-CCCCCCCCCccEEEechhhh
Q 018606 84 LVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLV---------ADA-VNLPYRSDFGDAAISIAVLH 149 (353)
Q Consensus 84 ~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~---------~D~-~~l~~~~~~fD~Vi~~~vl~ 149 (353)
+|.=||+|. |..+. ...+..|+.+|.++..++..++.+..... ... ..........|+|+..---.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~ 82 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ 82 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH
Confidence 577788886 44332 24567899999998888776665311100 000 01100012458877753322
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEE
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLI 176 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli 176 (353)
....++.++...++++..++.
T Consensus 83 ------~~~~v~~~l~~~~~~~~~vi~ 103 (325)
T PRK00094 83 ------ALREVLKQLKPLLPPDAPIVW 103 (325)
T ss_pred ------HHHHHHHHHHhhcCCCCEEEE
Confidence 245677888888887655443
No 468
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=29.65 E-value=1.5e+02 Score=27.92 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=49.0
Q ss_pred EEEEECCcc-cc-ccc--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHH
Q 018606 84 LVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159 (353)
Q Consensus 84 ~VLDvGCG~-G~-~~~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~ 159 (353)
+|.=||+|. |. ++. ...+..|++.|.++..++.+.+.++... .+..++.-.....|+|+.. +++.+....
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~-~~~~e~~~~~~~~dvvi~~-----v~~~~~~~~ 75 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGA-DSLEELVAKLPAPRVVWLM-----VPAGEITDA 75 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeec-CCHHHHHhhcCCCCEEEEE-----ecCCcHHHH
Confidence 456688886 33 222 2567799999999988877766654432 1111110000123676664 333322456
Q ss_pred HHHHHHhccccCcEEEEEE
Q 018606 160 AIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 160 ~l~el~rvLkpgG~lli~~ 178 (353)
++..+...|++|. ++|..
T Consensus 76 v~~~l~~~l~~g~-ivid~ 93 (301)
T PRK09599 76 TIDELAPLLSPGD-IVIDG 93 (301)
T ss_pred HHHHHHhhCCCCC-EEEeC
Confidence 6677777787764 44443
No 469
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=29.57 E-value=13 Score=30.50 Aligned_cols=41 Identities=15% Similarity=0.018 Sum_probs=23.7
Q ss_pred CCccEEEechhhhhcCChhH-HHHHHHHHHhccccCcEEEEEE
Q 018606 137 DFGDAAISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 137 ~~fD~Vi~~~vl~h~~~~e~-~~~~l~el~rvLkpgG~lli~~ 178 (353)
..||+|+..+.= --.+++. -..+++.+.++++|||.+..+.
T Consensus 49 ~~~Da~ylDgFs-P~~nPelWs~e~~~~l~~~~~~~~~l~Tys 90 (124)
T PF05430_consen 49 ARFDAWYLDGFS-PAKNPELWSEELFKKLARLSKPGGTLATYS 90 (124)
T ss_dssp T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES-
T ss_pred ccCCEEEecCCC-CcCCcccCCHHHHHHHHHHhCCCcEEEEee
Confidence 567777765411 1111111 1579999999999999875543
No 470
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=29.29 E-value=37 Score=38.36 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=55.6
Q ss_pred CCCEEEEECCccc-ccccc-CCCcEEEEEeCCHHHHHH-HHHcCCeEEEeeCCCCC-CCCCCccEEEechhhhhc---CC
Q 018606 81 SGSLVLDAGCGNG-KYLGL-NPDCFFVGCDISPSLIKI-CVDRGHEVLVADAVNLP-YRSDFGDAAISIAVLHHL---ST 153 (353)
Q Consensus 81 ~~~~VLDvGCG~G-~~~~~-~~~~~v~gvD~S~~~l~~-a~~~~i~~~~~D~~~l~-~~~~~fD~Vi~~~vl~h~---~~ 153 (353)
.+..+||+|.|+- +.+.+ .+...|+.+|.-+..--. |-+..-.|+++|..... .-...+|++.|+..|..- ..
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~a~ 901 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAASAN 901 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHHCT
T ss_pred CcceEEEccCCccceeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhcCC
Confidence 3579999998873 34444 566799999985532100 00012478999998755 334678999998877542 11
Q ss_pred hhHHHHHHHHHHhccccCcE--EEEEEc
Q 018606 154 ESRRKKAIEELVRVVKKGSL--VLITVW 179 (353)
Q Consensus 154 ~e~~~~~l~el~rvLkpgG~--lli~~~ 179 (353)
.. ....|+.+.+.+++.|. +++..-
T Consensus 902 ~t-l~~~l~~~l~~~~~~~~~~l~lQLN 928 (1289)
T PF06016_consen 902 VT-LDAGLQQFLSQCVQANVKRLWLQLN 928 (1289)
T ss_dssp ---HHHHHHHHHHHHHCTT-SEEEEE-B
T ss_pred Cc-HHHHHHHHHHHHHhCCccEEEEEec
Confidence 11 67888999998888764 555543
No 471
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=29.19 E-value=95 Score=28.13 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=32.4
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccccccccC--CCcEEEEEeCCHHHHHHHH
Q 018606 69 WPKVATFLNSLPSGSLVLDAGCGNGKYLGLN--PDCFFVGCDISPSLIKICV 118 (353)
Q Consensus 69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~~--~~~~v~gvD~S~~~l~~a~ 118 (353)
.+.+...+... +..+++|+=||+|..+... ++..++.-|+....+...+
T Consensus 9 ~~~I~~~ip~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 9 AKWIIELIPKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp HHHHHHHS-S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHcCCC-CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 34444444332 5789999999999976443 6779999999998877766
No 472
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=28.90 E-value=48 Score=30.90 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=26.0
Q ss_pred CCCCCEEEEECCcccccccc----C-----CCcEEEEEeCCHH
Q 018606 79 LPSGSLVLDAGCGNGKYLGL----N-----PDCFFVGCDISPS 112 (353)
Q Consensus 79 l~~~~~VLDvGCG~G~~~~~----~-----~~~~v~gvD~S~~ 112 (353)
+.+...++|+|||.|.+... . +...++.||....
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 46778999999999997531 1 5678999998553
No 473
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.57 E-value=84 Score=26.07 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=36.9
Q ss_pred HHHHHHhCCCCCCEEEEECCccccc---cccCCCcEEEEEeCCHHHHHHHHHcCCeEE
Q 018606 71 KVATFLNSLPSGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVDRGHEVL 125 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG~G~~---~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~ 125 (353)
.+...+......+.++..+|+.|.. +...+...-..-|+=.++++.|+++|++++
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ 61 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVP 61 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEE
Confidence 3455566666778899999999952 112111222236999999999999988664
No 474
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.22 E-value=57 Score=31.15 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=41.4
Q ss_pred EEEECCccccccc-c-CCCcE-EEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCC-CCCccEEEe
Q 018606 85 VLDAGCGNGKYLG-L-NPDCF-FVGCDISPSLIKICVDR-GHEVLVADAVNLPYR-SDFGDAAIS 144 (353)
Q Consensus 85 VLDvGCG~G~~~~-~-~~~~~-v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~-~~~fD~Vi~ 144 (353)
|+|+-||.|.+.. + ..|.+ +.++|+.+..++.-+.+ .-.++.+|+..+... -..+|+++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEe
Confidence 5899999998742 2 45565 56799999998887766 225567888776421 124788876
No 475
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=27.40 E-value=2e+02 Score=26.50 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=64.0
Q ss_pred HHHHHHhCCCCCCEEEEECCc-cccccc--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechh
Q 018606 71 KVATFLNSLPSGSLVLDAGCG-NGKYLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAV 147 (353)
Q Consensus 71 ~~~~~l~~l~~~~~VLDvGCG-~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~v 147 (353)
.+..++.... ...+|=+|.= +|.++. +...+.|+.+|+.+.+.+.. ..+++|... ..-....+|+|+-.-.
T Consensus 32 ai~~~le~~~-~k~~lI~G~YltG~~iA~~L~~~~eV~lvDI~p~lk~ll-~~~i~F~~~----~~~~~~~~DlIID~TG 105 (252)
T PF06690_consen 32 AIKYWLEGEE-FKQALIFGAYLTGNFIASALSKKCEVTLVDIHPHLKELL-NENIKFMEF----RNGLEGNPDLIIDTTG 105 (252)
T ss_pred HHHHHhcccc-cceEEEEEEEeehHHHHHHhccCceEEEEeCcHHHHHHh-cCCCceeec----cCCCCCCCCEEEECCC
Confidence 3444554322 2378888753 455543 34445999999999998887 557888732 1212457899999888
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccchh
Q 018606 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 187 (353)
Q Consensus 148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~~ 187 (353)
|..+.+ ..| +-+.| ..|++.++.....+..
T Consensus 106 lGGv~~-----~~L----s~~~p-~v~IVEdP~~~~sD~~ 135 (252)
T PF06690_consen 106 LGGVDP-----DFL----SKFNP-KVFIVEDPKGDGSDKT 135 (252)
T ss_pred CCCCCH-----HHH----hccCC-CEEEEECCCccCcchh
Confidence 888854 223 33454 4778888877664443
No 476
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.96 E-value=99 Score=31.45 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=47.1
Q ss_pred HhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606 76 LNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLH 149 (353)
Q Consensus 76 l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~ 149 (353)
+..+.++.+|+=+|.|.-..+. ...|+.|++.|..+..++.+++.++.+..++.....+ ..+|+|+.+-.+.
T Consensus 6 ~~~~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l--~~~D~VV~SpGi~ 81 (488)
T PRK03369 6 LDPLLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQI--ADYALVVTSPGFR 81 (488)
T ss_pred cccccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHh--hcCCEEEECCCCC
Confidence 3345577899999998644322 2677899999988777766666677765443211112 2468888877654
No 477
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=26.87 E-value=1.4e+02 Score=21.24 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=33.7
Q ss_pred eeeeeeeecccccHHHHHhcccCCcEEEEccccCCCeEEEEEE
Q 018606 309 VVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQR 351 (353)
Q Consensus 309 ~~~~ryyH~F~~gEL~~l~~~~~~~~v~~~~~d~~nwcvi~~k 351 (353)
..--+.-|--....|...|...| .++++..-+.|.|.++++|
T Consensus 29 ~l~v~~d~~~~~~di~~~~~~~g-~~~~~~~~~~~~~~i~I~K 70 (70)
T PF01206_consen 29 VLEVLVDDPAAVEDIPRWCEENG-YEVVEVEEEGGEYRILIRK 70 (70)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHT-EEEEEEEESSSSEEEEEEE
T ss_pred EEEEEECCccHHHHHHHHHHHCC-CEEEEEEEeCCEEEEEEEC
Confidence 34556666667788999999886 8888877799999999887
No 478
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=26.42 E-value=5.1e+02 Score=23.82 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=54.4
Q ss_pred hCCCCCCEEEEECCcc--cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC---CCCCCCccEEEechhh
Q 018606 77 NSLPSGSLVLDAGCGN--GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL---PYRSDFGDAAISIAVL 148 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG~--G~~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l---~~~~~~fD~Vi~~~vl 148 (353)
..+.++.+||=.|+.. |..+ ....+..+++++. +...+.+++.+...+....... ....+.+|+++....
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~vl~~~~- 212 (331)
T cd08273 135 AKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALRELGATPIDYRTKDWLPAMLTPGGVDVVFDGVG- 212 (331)
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHHHcCCeEEcCCCcchhhhhccCCCceEEEECCc-
Confidence 3567888999888732 3332 1255678888886 7777777766643322111111 112245787776431
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 149 HHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
. ..+....+.|+++|+++...
T Consensus 213 ----~-----~~~~~~~~~l~~~g~~v~~g 233 (331)
T cd08273 213 ----G-----ESYEESYAALAPGGTLVCYG 233 (331)
T ss_pred ----h-----HHHHHHHHHhcCCCEEEEEc
Confidence 1 22667788999999987654
No 479
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=26.42 E-value=2.9e+02 Score=26.07 Aligned_cols=87 Identities=13% Similarity=-0.019 Sum_probs=49.1
Q ss_pred CEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeC---------CCCCCCCCCccEEEechhhh
Q 018606 83 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADA---------VNLPYRSDFGDAAISIAVLH 149 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~---------~~l~~~~~~fD~Vi~~~vl~ 149 (353)
.+|+=||+|. |.++. ...+..|+.+..+. .+..++.++.+...+- ...+-....+|+|+..-=-+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~ 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence 5789999986 55443 24567888887765 2334444544322111 01111135689887652111
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606 150 HLSTESRRKKAIEELVRVVKKGSLVLIT 177 (353)
Q Consensus 150 h~~~~e~~~~~l~el~rvLkpgG~lli~ 177 (353)
. ...++..+...+++++.++..
T Consensus 84 ~------~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 84 A------NALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred C------hHhHHHHHhhhcCCCCEEEEe
Confidence 1 245777888888999876544
No 480
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=26.36 E-value=1.9e+02 Score=26.33 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=56.5
Q ss_pred HHHHHHhCCCCC---CEEEEECCcccccc--------ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC
Q 018606 71 KVATFLNSLPSG---SLVLDAGCGNGKYL--------GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN 131 (353)
Q Consensus 71 ~~~~~l~~l~~~---~~VLDvGCG~G~~~--------~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~ 131 (353)
...+|++.+..| ..|+++.|+-|... ...-+.++++|-+.+..+...++. -++|+.++...
T Consensus 28 ~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e 107 (218)
T PF07279_consen 28 GVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE 107 (218)
T ss_pred CHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence 445555544433 68899976644321 136678999998887765444443 24788887432
Q ss_pred --CCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccc--cCcEEEEEEcC
Q 018606 132 --LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK--KGSLVLITVWA 180 (353)
Q Consensus 132 --l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLk--pgG~lli~~~~ 180 (353)
++. -...|+++...= ++.++.++.++++ |.|-+++..-.
T Consensus 108 ~~~~~-~~~iDF~vVDc~---------~~d~~~~vl~~~~~~~~GaVVV~~Na 150 (218)
T PF07279_consen 108 EVMPG-LKGIDFVVVDCK---------REDFAARVLRAAKLSPRGAVVVCYNA 150 (218)
T ss_pred HHHhh-ccCCCEEEEeCC---------chhHHHHHHHHhccCCCceEEEEecc
Confidence 332 235677766432 2334444555554 45776665443
No 481
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=25.81 E-value=3.5e+02 Score=25.97 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=59.9
Q ss_pred CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-------CCCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNL-------PYRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-------~~~~~~fD~Vi~~ 145 (353)
.+.++.+||=.|+|. |..+. ...+. .++++|.++...+.+++.+...+ +.... .+....+|+++..
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~i~~~~~~~~d~v~d~ 250 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPI--DFSDGDPVEQILGLEPGGVDRAVDC 250 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEe--ccCcccHHHHHHHhhCCCCCEEEEC
Confidence 456788888788863 33321 24565 78899999999998888775432 22211 0112457888875
Q ss_pred hhhhhcCC--hhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 146 AVLHHLST--ESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 146 ~vl~h~~~--~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
..-.-... .......+.++.++|+++|++.+...
T Consensus 251 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375)
T cd08282 251 VGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGV 286 (375)
T ss_pred CCCcccccccccchHHHHHHHHHHhhcCcEEEEEec
Confidence 32110000 00023468888999999999865543
No 482
>PRK12742 oxidoreductase; Provisional
Probab=25.52 E-value=4.5e+02 Score=22.87 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=53.4
Q ss_pred CCEEEEECCcccc--ccc---cCCCcEEEEEeC-CHHHHHH-HHHcCCeEEEeeCCCCC-----C-CCCCccEEEechhh
Q 018606 82 GSLVLDAGCGNGK--YLG---LNPDCFFVGCDI-SPSLIKI-CVDRGHEVLVADAVNLP-----Y-RSDFGDAAISIAVL 148 (353)
Q Consensus 82 ~~~VLDvGCG~G~--~~~---~~~~~~v~gvD~-S~~~l~~-a~~~~i~~~~~D~~~l~-----~-~~~~fD~Vi~~~vl 148 (353)
+.+||=.|++.|. .+. ...+..|+.+.. +...++. +.+.+..++.+|+.+.. + ..+.+|+++.....
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag~ 85 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAGI 85 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCCC
Confidence 5688888876554 221 245677777654 4443333 23336777778876521 1 12457998887654
Q ss_pred hhcCC-----hhHH-----------HHHHHHHHhccccCcEEEEEE
Q 018606 149 HHLST-----ESRR-----------KKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 149 ~h~~~-----~e~~-----------~~~l~el~rvLkpgG~lli~~ 178 (353)
....+ .+.. ..++.++.+.++.+|.+++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 131 (237)
T PRK12742 86 AVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG 131 (237)
T ss_pred CCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 33221 1111 123356666677778776653
No 483
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=25.33 E-value=4.4e+02 Score=24.53 Aligned_cols=71 Identities=6% Similarity=0.005 Sum_probs=45.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHcCCeEEE-eeCCCCC------CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccC
Q 018606 99 NPDCFFVGCDISPSLIKICVDRGHEVLV-ADAVNLP------YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 171 (353)
Q Consensus 99 ~~~~~v~gvD~S~~~l~~a~~~~i~~~~-~D~~~l~------~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpg 171 (353)
..+..+++++.++.-.+.+++.+.+.+. .+-..+. .....+|+++.... . ..+....+.|+++
T Consensus 166 ~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g-----~-----~~~~~~~~~l~~~ 235 (324)
T cd08291 166 ADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG-----G-----GLTGQILLAMPYG 235 (324)
T ss_pred HcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC-----c-----HHHHHHHHhhCCC
Confidence 5677899999999999999887654332 1111110 12235788876422 2 1234567788999
Q ss_pred cEEEEEEc
Q 018606 172 SLVLITVW 179 (353)
Q Consensus 172 G~lli~~~ 179 (353)
|++++...
T Consensus 236 G~~v~~g~ 243 (324)
T cd08291 236 STLYVYGY 243 (324)
T ss_pred CEEEEEEe
Confidence 99887653
No 484
>PRK06500 short chain dehydrogenase; Provisional
Probab=25.21 E-value=3.5e+02 Score=23.80 Aligned_cols=67 Identities=19% Similarity=0.087 Sum_probs=41.4
Q ss_pred CCEEEEECCcccc--ccc---cCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCC----------CCCCccEEE
Q 018606 82 GSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPY----------RSDFGDAAI 143 (353)
Q Consensus 82 ~~~VLDvGCG~G~--~~~---~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~----------~~~~fD~Vi 143 (353)
+.++|=.|++.|. .+. ...+..|++++.+...++...+. .+.++.+|+.+..- ..+.+|+++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 85 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAVF 85 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 5678888875544 222 24677999999987655544332 35677788765320 014578888
Q ss_pred echhh
Q 018606 144 SIAVL 148 (353)
Q Consensus 144 ~~~vl 148 (353)
.....
T Consensus 86 ~~ag~ 90 (249)
T PRK06500 86 INAGV 90 (249)
T ss_pred ECCCC
Confidence 76654
No 485
>PRK06701 short chain dehydrogenase; Provisional
Probab=24.49 E-value=2.5e+02 Score=26.02 Aligned_cols=98 Identities=12% Similarity=0.038 Sum_probs=54.0
Q ss_pred CCCEEEEECCccccc--cc---cCCCcEEEEEeCCHH-HHHH----HHHc--CCeEEEeeCCCCC-----CC-----CCC
Q 018606 81 SGSLVLDAGCGNGKY--LG---LNPDCFFVGCDISPS-LIKI----CVDR--GHEVLVADAVNLP-----YR-----SDF 138 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~--~~---~~~~~~v~gvD~S~~-~l~~----a~~~--~i~~~~~D~~~l~-----~~-----~~~ 138 (353)
.+.++|=.|++.|.- +. ...+.+|+.++.+.. .++. .+.. .+.++.+|+.+.. +. -+.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 357899999866552 21 245788888887642 1211 1121 3567888887532 10 135
Q ss_pred ccEEEechhhhhcC------Chh-----------HHHHHHHHHHhccccCcEEEEEE
Q 018606 139 GDAAISIAVLHHLS------TES-----------RRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 139 fD~Vi~~~vl~h~~------~~e-----------~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+|++|..+...+.. +.+ -...+++.+.+.++++|.+++..
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 78888766442211 111 13445556666667777766554
No 486
>PRK05993 short chain dehydrogenase; Provisional
Probab=24.46 E-value=1.7e+02 Score=26.68 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=47.2
Q ss_pred CCEEEEECCcccc--cc-c--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-----C------CCCCccEEEec
Q 018606 82 GSLVLDAGCGNGK--YL-G--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-----Y------RSDFGDAAISI 145 (353)
Q Consensus 82 ~~~VLDvGCG~G~--~~-~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-----~------~~~~fD~Vi~~ 145 (353)
+.+||=.|++.|. .+ . ...|..|++++.++..++.....++.++.+|+.+.. + ..+..|+++.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~ 83 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNN 83 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEEC
Confidence 4678888986554 22 1 256789999999988877766667888899987631 1 11467999887
Q ss_pred hhh
Q 018606 146 AVL 148 (353)
Q Consensus 146 ~vl 148 (353)
+.+
T Consensus 84 Ag~ 86 (277)
T PRK05993 84 GAY 86 (277)
T ss_pred CCc
Confidence 654
No 487
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=24.40 E-value=3.2e+02 Score=26.13 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=46.2
Q ss_pred HHHHHHHhhccccccccccCh-----HHHHHHHh-CCC----CCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHH
Q 018606 49 YVHRVYDAIAPHFSSTRFAKW-----PKVATFLN-SLP----SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKI 116 (353)
Q Consensus 49 ~v~~~yd~~a~~y~~~~~~~~-----~~~~~~l~-~l~----~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~ 116 (353)
+.-++|+.++.+.+...+..| +++...+. .++ +.-.++=..-|+|..+.. ..|+.|+|+|-+-.+.+.
T Consensus 208 q~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 208 QALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred HHHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHH
Confidence 345678888877765444333 22332222 111 112344456777777653 678899999999988776
Q ss_pred HHHcCCeE-EEee
Q 018606 117 CVDRGHEV-LVAD 128 (353)
Q Consensus 117 a~~~~i~~-~~~D 128 (353)
-+..+-++ ++++
T Consensus 288 r~~~g~~VtlQGN 300 (359)
T KOG2872|consen 288 RRRVGNRVTLQGN 300 (359)
T ss_pred HHhhCCceEEecC
Confidence 55544332 3444
No 488
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.26 E-value=3.1e+02 Score=26.70 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=54.5
Q ss_pred CCCCCCEEEEECCc-cccccc---cCCCcEEEEEeCCHHHHHHHHH-cCCeEEEeeCCC---CC----CCCCCccEEEec
Q 018606 78 SLPSGSLVLDAGCG-NGKYLG---LNPDCFFVGCDISPSLIKICVD-RGHEVLVADAVN---LP----YRSDFGDAAISI 145 (353)
Q Consensus 78 ~l~~~~~VLDvGCG-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~-~~i~~~~~D~~~---l~----~~~~~fD~Vi~~ 145 (353)
.+.||..|-=+|.| -|.+.- ..-+.+|+++|.+..--+.|-+ .+.+.+..-..+ +. .-+.-.|-|.+.
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~ 257 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL 257 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec
Confidence 35678777777754 354432 2567899999999855444444 565554433211 11 112222333322
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~ 181 (353)
. ...+..+.+.||++|.+++.-...
T Consensus 258 ------a-----~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 258 ------A-----EHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred ------c-----ccchHHHHHHhhcCCEEEEEeCcC
Confidence 1 345777889999999998876543
No 489
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=24.10 E-value=5.6e+02 Score=23.44 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=58.0
Q ss_pred CCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606 78 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 144 (353)
Q Consensus 78 ~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~ 144 (353)
.+.++..||=.|+. .|..+. ...+..+++++.++...+.+++.++..+. +..... .....+|+|+.
T Consensus 139 ~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~d~vl~ 217 (324)
T cd08244 139 TLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALGADVAV-DYTRPDWPDQVREALGGGGVTVVLD 217 (324)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE-ecCCccHHHHHHHHcCCCCceEEEE
Confidence 45678888888852 343332 25677899999999888888776654332 111111 12245888886
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
.. .. ..+..+.+.|+++|+++....
T Consensus 218 ~~-----g~-----~~~~~~~~~l~~~g~~v~~g~ 242 (324)
T cd08244 218 GV-----GG-----AIGRAALALLAPGGRFLTYGW 242 (324)
T ss_pred CC-----Ch-----HhHHHHHHHhccCcEEEEEec
Confidence 52 22 134778899999999887644
No 490
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=23.79 E-value=5.2e+02 Score=25.07 Aligned_cols=92 Identities=21% Similarity=0.230 Sum_probs=58.1
Q ss_pred CCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------------------
Q 018606 78 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------------------- 133 (353)
Q Consensus 78 ~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~------------------- 133 (353)
.+.++.+||=.|+. .|..+. ...|+.+++++.++...+.+++.+...+. |....+
T Consensus 186 ~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (398)
T TIGR01751 186 TVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVI-DRNDFGHWGRLPDLNTQAPKEWTKS 264 (398)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEe-cCCCcchhhccccccccccchhhhc
Confidence 46778899999973 233332 25677888999998888888877653322 111000
Q ss_pred -----------CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606 134 -----------YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 134 -----------~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~ 180 (353)
.....+|+|+.... ...+....+.|+++|+++.....
T Consensus 265 ~~~~~~~~~~~~~~~g~d~vld~~g----------~~~~~~~~~~l~~~G~~v~~g~~ 312 (398)
T TIGR01751 265 FKRFGKRIRELTGGEDPDIVFEHPG----------RATFPTSVFVCRRGGMVVICGGT 312 (398)
T ss_pred chhHHHHHHHHcCCCCceEEEECCc----------HHHHHHHHHhhccCCEEEEEccc
Confidence 01234787776421 13467788889999998877543
No 491
>PRK08655 prephenate dehydrogenase; Provisional
Probab=23.76 E-value=1.5e+02 Score=29.79 Aligned_cols=86 Identities=21% Similarity=0.265 Sum_probs=49.2
Q ss_pred EEEEEC-Cc-cccccc---cCCCcEEEEEeCCHHHH-HHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHH
Q 018606 84 LVLDAG-CG-NGKYLG---LNPDCFFVGCDISPSLI-KICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157 (353)
Q Consensus 84 ~VLDvG-CG-~G~~~~---~~~~~~v~gvD~S~~~l-~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~ 157 (353)
+|+=|| +| -|..+. ...+..|+++|.++... +.+.+.++.+. .+.... -...|+|+..--... .
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~-~~~~e~---~~~aDvVIlavp~~~------~ 71 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYA-NDNIDA---AKDADIVIISVPINV------T 71 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeec-cCHHHH---hccCCEEEEecCHHH------H
Confidence 466676 56 344332 24567899999998764 55665565321 111111 134588887643332 3
Q ss_pred HHHHHHHHhccccCcEEEEEEcC
Q 018606 158 KKAIEELVRVVKKGSLVLITVWA 180 (353)
Q Consensus 158 ~~~l~el~rvLkpgG~lli~~~~ 180 (353)
..++.++...+++|. +++.+-+
T Consensus 72 ~~vl~~l~~~l~~~~-iViDvsS 93 (437)
T PRK08655 72 EDVIKEVAPHVKEGS-LLMDVTS 93 (437)
T ss_pred HHHHHHHHhhCCCCC-EEEEccc
Confidence 467788888888775 4444433
No 492
>PRK05867 short chain dehydrogenase; Provisional
Probab=23.65 E-value=3.4e+02 Score=24.19 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=44.1
Q ss_pred CCCEEEEECCccccc--cc---cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-----C-----CCCCc
Q 018606 81 SGSLVLDAGCGNGKY--LG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----Y-----RSDFG 139 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~--~~---~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~-----~-----~~~~f 139 (353)
.+.++|=.|++.|.- +. ...|.+|+.++.+...++...+. .+.++.+|+.+.. + .-+..
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 87 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI 87 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 367899999876652 21 25678999999987765544322 3556778877532 0 01467
Q ss_pred cEEEechhhh
Q 018606 140 DAAISIAVLH 149 (353)
Q Consensus 140 D~Vi~~~vl~ 149 (353)
|+++.+..+.
T Consensus 88 d~lv~~ag~~ 97 (253)
T PRK05867 88 DIAVCNAGII 97 (253)
T ss_pred CEEEECCCCC
Confidence 9998876543
No 493
>PLN02712 arogenate dehydrogenase
Probab=23.16 E-value=2.2e+02 Score=30.38 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=47.9
Q ss_pred CEEEEECCcc-cccc-cc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHH
Q 018606 83 SLVLDAGCGN-GKYL-GL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 158 (353)
Q Consensus 83 ~~VLDvGCG~-G~~~-~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~ 158 (353)
.+|.=||+|. |..+ .. ..+..|+++|.+... +.+++.++.+ ..|...+. ....|+|+..--.. ...
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~-~~d~~e~~--~~~aDvViLavP~~------~~~ 122 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSF-FLDPHDLC--ERHPDVILLCTSII------STE 122 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEE-eCCHHHHh--hcCCCEEEEcCCHH------HHH
Confidence 5789999987 4433 21 446799999998553 5566666544 22222211 12358887753222 134
Q ss_pred HHHHHHH-hccccCcEEEEEEc
Q 018606 159 KAIEELV-RVVKKGSLVLITVW 179 (353)
Q Consensus 159 ~~l~el~-rvLkpgG~lli~~~ 179 (353)
.++.++. ..+++|. +++.+-
T Consensus 123 ~vl~~l~~~~l~~g~-iVvDv~ 143 (667)
T PLN02712 123 NVLKSLPLQRLKRNT-LFVDVL 143 (667)
T ss_pred HHHHhhhhhcCCCCe-EEEECC
Confidence 5566654 3466654 455543
No 494
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=23.11 E-value=4.9e+02 Score=23.87 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=56.1
Q ss_pred CCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606 78 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 144 (353)
Q Consensus 78 ~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~ 144 (353)
.+.++.+||=.|+. .|..+. ...|+.++.+.-+....+.+++.+++.+.. ..... .....+|+|+.
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~i~~~~~~~~~d~v~d 214 (324)
T cd08292 136 GVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVS-TEQPGWQDKVREAAGGAPISVALD 214 (324)
T ss_pred CCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEc-CCCchHHHHHHHHhCCCCCcEEEE
Confidence 56788888888763 344332 356778888877777777776666543221 11111 11235898886
Q ss_pred chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179 (353)
Q Consensus 145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~ 179 (353)
... . ..+.+..+.|+++|+++..-.
T Consensus 215 ~~g-----~-----~~~~~~~~~l~~~g~~v~~g~ 239 (324)
T cd08292 215 SVG-----G-----KLAGELLSLLGEGGTLVSFGS 239 (324)
T ss_pred CCC-----C-----hhHHHHHHhhcCCcEEEEEec
Confidence 422 2 235677899999999876643
No 495
>PF02013 CBM_10: Cellulose or protein binding domain; InterPro: IPR002883 This domain is found in two distinct sets of proteins with different functions. Those found in aerobic bacteria bind cellulose (or other carbohydrates); but in anaerobic fungi they are protein binding domains, referred to as dockerin domains or docking domains. They are believed to be responsible for the assembly of a multiprotein cellulase/hemicellulase complex, similar to the cellulosome found in certain anaerobic bacteria. The recycling of photosynthetically fixed carbon in plant cell walls is a key microbial process. Enzyme systems that attack the plant cell wall contain noncatalytic carbohydrate-binding modules that mediate attachment to this composite structure and play a pivotal role in maximizing the hydrolytic process. In anaerobes, the degradation is carried out by a high molecular weight, multifunctional complex termed the cellulosome. This consists of a number of independent enzyme components, each of which contains a conserved 40-residue dockerin domain, which functions to bind the enzyme to a cohesin domain within the scaffoldin protein [, ]. In anaerobic bacteria that degrade plant cell walls, exemplified by Clostridium thermocellum, the dockerin domains of the catalytic polypeptides can bind equally well to any cohesin from the same organism. More recently, anaerobic fungi, typified by Piromyces equi, have been suggested to also synthesise a cellulosome complex, although the dockerin sequences of the bacterial and fungal enzymes are completely different []. For example, the fungal enzymes contain one, two or three copies of the dockerin sequence in tandem within the catalytic polypeptide. In contrast, all the C. thermocellum cellulosome catalytic components contain a single dockerin domain. The anaerobic bacterial dockerins are homologous to EF hands (calcium-binding motifs) and require calcium for activity whereas the fungal dockerin does not require calcium. Finally, the interaction between cohesin and dockerin appears to be species specific in bacteria, there is almost no species specificity of binding within fungal species and no identified sites that distinguish different species. The structure of dockerin from P. equi contains two helical stretches and four short beta-strands which form an antiparallel sheet structure adjacent to an additional short twisted parallel strand. The N- and C-termini are adjacent to each other. Aerobic bacteria contain related regions, however these appear to function as cellulose/carbohydrate binding domains.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2J4M_A 2J4N_A 1E8R_A 1QLD_A 1E8P_A 1E8Q_A.
Probab=23.11 E-value=42 Score=21.39 Aligned_cols=9 Identities=22% Similarity=1.128 Sum_probs=5.7
Q ss_pred ccCCCeEEE
Q 018606 340 FDKSNWCIV 348 (353)
Q Consensus 340 ~d~~nwcvi 348 (353)
++.++||+|
T Consensus 28 vEN~~wCgi 36 (36)
T PF02013_consen 28 VENGDWCGI 36 (36)
T ss_dssp EETTEEEEE
T ss_pred eECCceEcC
Confidence 456677765
No 496
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=22.94 E-value=3.1e+02 Score=25.72 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=57.4
Q ss_pred CCCCCCEEEEECCcc-cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEE-eeC-CCC-----CCCCCCccEEEech
Q 018606 78 SLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLV-ADA-VNL-----PYRSDFGDAAISIA 146 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~-G~~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~-~D~-~~l-----~~~~~~fD~Vi~~~ 146 (353)
.+.++.+||=.|+|. |..+ ....+..+++++.+.+..+.+++.+++-+. ..- ..+ .+..+.+|+++..-
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~ 241 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDAL 241 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcC
Confidence 456788898888753 2222 125578999999999988888776653222 111 111 01112688887642
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
.. ...+....+.|+++|.++...
T Consensus 242 -----g~----~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 242 -----GI----PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred -----CC----HHHHHHHHHHhhcCCEEEEeC
Confidence 11 235677889999999987654
No 497
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.63 E-value=1.7e+02 Score=25.77 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=29.4
Q ss_pred CCCCCccEEEechhhhhcCC-----h----hHHHHHHHHHHhccccCcEEEEEE
Q 018606 134 YRSDFGDAAISIAVLHHLST-----E----SRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 134 ~~~~~fD~Vi~~~vl~h~~~-----~----e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
+..+..|+|+.+.+|+-+.. . +...+++..+..+|+|...++..+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 45677899999999887654 1 224556666666666775554443
No 498
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=22.60 E-value=1.3e+02 Score=28.84 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=32.8
Q ss_pred CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc
Q 018606 78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 120 (353)
Q Consensus 78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~ 120 (353)
.+.+|.+|+-+|+|-...+.+ ....+|+++|+++.-|...+-+
T Consensus 60 ~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lk 104 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLK 104 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHH
Confidence 457788999999998866553 3446999999999887665543
No 499
>PRK12367 short chain dehydrogenase; Provisional
Probab=22.42 E-value=3.8e+02 Score=24.19 Aligned_cols=69 Identities=12% Similarity=-0.053 Sum_probs=41.1
Q ss_pred CCCEEEEECCccccc--cc---cCCCcEEEEEeCCH-HHHHHHHHcCCeEEEeeCCCCC---CCCCCccEEEechhhh
Q 018606 81 SGSLVLDAGCGNGKY--LG---LNPDCFFVGCDISP-SLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVLH 149 (353)
Q Consensus 81 ~~~~VLDvGCG~G~~--~~---~~~~~~v~gvD~S~-~~l~~a~~~~i~~~~~D~~~l~---~~~~~fD~Vi~~~vl~ 149 (353)
.+.++|-.|++.|.- +. ...|..|++++.+. ..++........++.+|+.+.. -.-+..|++|.++.+.
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence 357889999876652 21 25678999998876 2222221122346677876532 1124589999877553
No 500
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=22.13 E-value=6.3e+02 Score=23.29 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=57.0
Q ss_pred hCCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEE-eeCCCC-----CCCCCCccEEEec
Q 018606 77 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLV-ADAVNL-----PYRSDFGDAAISI 145 (353)
Q Consensus 77 ~~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~-~D~~~l-----~~~~~~fD~Vi~~ 145 (353)
..+.++.+||=.|++ .|..+. ...+..+++++.++...+.+++.+.+.+. .+-... ......+|+++..
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~ 214 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYES 214 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEEC
Confidence 356788889888853 344332 25577899999988888888766653322 111110 0112357888763
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178 (353)
Q Consensus 146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~ 178 (353)
. . ...+..+.+.|+++|+++..-
T Consensus 215 ~-----g-----~~~~~~~~~~l~~~g~~v~~g 237 (329)
T cd08250 215 V-----G-----GEMFDTCVDNLALKGRLIVIG 237 (329)
T ss_pred C-----c-----HHHHHHHHHHhccCCeEEEEe
Confidence 2 1 235777888999999987653
Done!