Query 018609
Match_columns 353
No_of_seqs 151 out of 1838
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:32:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4E-50 8.8E-55 374.6 39.4 335 1-338 116-453 (455)
2 PRK10189 MATE family multidrug 100.0 3.4E-45 7.5E-50 344.4 41.2 329 2-332 129-466 (478)
3 PRK00187 multidrug efflux prot 100.0 8.6E-45 1.9E-49 341.5 40.5 325 2-328 109-444 (464)
4 PRK01766 multidrug efflux prot 100.0 4.3E-43 9.4E-48 330.5 40.3 329 2-332 112-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 4.8E-43 1E-47 329.1 40.1 322 2-327 113-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 2.1E-42 4.6E-47 322.5 38.6 321 2-332 110-434 (441)
7 TIGR01695 mviN integral membra 100.0 5.6E-32 1.2E-36 258.3 38.7 317 2-328 103-428 (502)
8 KOG1347 Uncharacterized membra 100.0 1.5E-32 3.3E-37 254.7 22.0 345 2-348 128-472 (473)
9 TIGR00797 matE putative efflux 100.0 6E-29 1.3E-33 226.0 30.5 247 2-250 93-341 (342)
10 TIGR02900 spore_V_B stage V sp 100.0 4.4E-28 9.5E-33 230.7 35.4 316 3-327 102-433 (488)
11 PF03023 MVIN: MviN-like prote 100.0 1.2E-25 2.7E-30 210.2 40.8 317 2-328 77-403 (451)
12 PRK15099 O-antigen translocase 100.0 4.6E-26 1E-30 212.3 35.4 308 2-326 101-410 (416)
13 COG0534 NorM Na+-driven multid 99.9 2.9E-25 6.2E-30 207.6 27.7 210 118-330 12-223 (455)
14 PRK00187 multidrug efflux prot 99.9 5E-25 1.1E-29 207.5 27.2 208 117-328 4-215 (464)
15 PRK10367 DNA-damage-inducible 99.9 9.4E-25 2E-29 204.0 27.8 206 120-327 6-211 (441)
16 PRK10189 MATE family multidrug 99.9 7.1E-25 1.5E-29 206.7 25.6 204 120-326 26-235 (478)
17 COG0728 MviN Uncharacterized m 99.9 1.8E-22 4E-27 186.5 38.4 319 2-328 111-437 (518)
18 PRK09575 vmrA multidrug efflux 99.9 5.5E-24 1.2E-28 200.1 25.7 208 118-328 7-215 (453)
19 PRK01766 multidrug efflux prot 99.9 2.5E-23 5.4E-28 196.3 27.7 210 117-329 6-219 (456)
20 PRK10459 colanic acid exporter 99.9 2.3E-18 5E-23 164.1 35.9 291 22-327 113-404 (492)
21 TIGR00797 matE putative efflux 99.9 1.8E-19 3.9E-24 163.7 24.0 194 131-327 1-196 (342)
22 PF01554 MatE: MatE; InterPro 99.9 1.8E-21 4E-26 157.4 9.3 162 131-294 1-162 (162)
23 COG2244 RfbX Membrane protein 99.8 2.2E-16 4.9E-21 150.1 32.6 280 19-310 115-394 (480)
24 TIGR02900 spore_V_B stage V sp 99.6 4.3E-13 9.4E-18 127.8 21.7 196 126-328 2-204 (488)
25 KOG1347 Uncharacterized membra 99.5 8.2E-13 1.8E-17 123.4 20.6 207 119-329 24-231 (473)
26 TIGR01695 mviN integral membra 99.5 8.1E-12 1.7E-16 119.6 22.1 197 125-328 2-207 (502)
27 PRK15099 O-antigen translocase 99.4 7.5E-11 1.6E-15 110.1 20.2 191 126-327 4-196 (416)
28 PF03023 MVIN: MviN-like prote 99.2 2.8E-09 6E-14 100.3 20.0 175 151-330 3-184 (451)
29 PF01943 Polysacc_synt: Polysa 99.1 2.8E-08 6.1E-13 86.9 19.4 154 32-192 120-273 (273)
30 COG0728 MviN Uncharacterized m 98.9 1.8E-06 3.8E-11 81.0 25.0 206 118-328 6-216 (518)
31 PF13440 Polysacc_synt_3: Poly 98.9 6.3E-07 1.4E-11 77.5 20.3 158 22-191 92-251 (251)
32 PF04506 Rft-1: Rft protein; 98.7 1.7E-05 3.7E-10 75.7 25.2 204 122-327 252-469 (549)
33 PF14667 Polysacc_synt_C: Poly 98.6 7.3E-06 1.6E-10 64.6 17.1 79 24-104 2-80 (146)
34 PF01943 Polysacc_synt: Polysa 98.4 0.00014 2.9E-09 63.5 21.6 186 127-327 3-190 (273)
35 PF07260 ANKH: Progressive ank 98.3 0.00048 1E-08 59.8 22.5 167 118-292 6-176 (345)
36 PRK10459 colanic acid exporter 98.3 9.9E-05 2.2E-09 70.6 20.2 182 124-323 6-189 (492)
37 KOG2864 Nuclear division RFT1 98.3 0.00045 9.8E-09 62.6 22.3 199 124-327 240-448 (530)
38 PF13440 Polysacc_synt_3: Poly 98.1 0.0011 2.5E-08 57.0 21.4 162 144-323 6-168 (251)
39 PF01554 MatE: MatE; InterPro 98.1 8.2E-07 1.8E-11 71.4 1.2 69 2-70 93-162 (162)
40 PF14667 Polysacc_synt_C: Poly 98.1 3E-05 6.6E-10 61.1 10.0 79 247-328 2-80 (146)
41 PF07260 ANKH: Progressive ank 97.8 0.0044 9.6E-08 53.9 17.6 211 7-223 115-343 (345)
42 COG2244 RfbX Membrane protein 97.7 0.003 6.5E-08 60.2 18.2 185 123-325 6-193 (480)
43 PF04506 Rft-1: Rft protein; 94.4 0.66 1.4E-05 44.9 11.9 101 3-104 367-470 (549)
44 KOG2864 Nuclear division RFT1 90.1 2.1 4.5E-05 39.7 8.6 100 3-104 347-449 (530)
45 COG4267 Predicted membrane pro 87.0 24 0.00052 32.2 24.9 268 39-325 149-439 (467)
46 COG4267 Predicted membrane pro 83.5 36 0.00077 31.2 21.2 136 175-327 75-210 (467)
47 TIGR00822 EII-Sor PTS system, 80.4 39 0.00084 29.4 18.5 100 164-266 97-200 (265)
48 PF01102 Glycophorin_A: Glycop 63.3 7.1 0.00015 29.4 2.5 12 305-316 68-79 (122)
49 PF04505 Dispanin: Interferon- 63.0 48 0.001 23.0 6.7 38 180-217 36-73 (82)
50 PF05975 EcsB: Bacterial ABC t 53.3 1.9E+02 0.0041 26.8 17.1 36 196-231 89-124 (386)
51 KOG2468 Dolichol kinase [Lipid 50.8 1.8E+02 0.004 27.4 9.6 79 128-215 378-456 (510)
52 PF05393 Hum_adeno_E3A: Human 38.3 28 0.00061 24.2 2.0 32 301-332 30-61 (94)
53 PF12794 MscS_TM: Mechanosensi 37.0 3.2E+02 0.007 24.8 17.7 23 276-298 194-216 (340)
54 PRK15111 antimicrobial peptide 36.5 3E+02 0.0066 24.3 12.2 77 8-84 76-163 (296)
55 PRK09757 PTS system N-acetylga 34.8 3.1E+02 0.0068 23.9 19.1 102 162-266 96-201 (267)
56 PF00558 Vpu: Vpu protein; In 34.3 78 0.0017 21.9 3.7 28 323-350 28-55 (81)
57 TIGR00383 corA magnesium Mg(2+ 33.4 2.4E+02 0.0052 25.1 8.0 24 307-330 294-317 (318)
58 PRK09546 zntB zinc transporter 30.8 1.4E+02 0.003 26.9 5.9 43 287-330 273-323 (324)
59 COG0598 CorA Mg2+ and Co2+ tra 30.7 4E+02 0.0086 23.9 8.9 44 287-330 271-321 (322)
60 COG3715 ManY Phosphotransferas 29.7 3.8E+02 0.0082 23.4 17.9 92 172-266 108-200 (265)
61 PF01595 DUF21: Domain of unkn 29.2 2.9E+02 0.0064 21.9 12.9 57 180-236 98-154 (183)
62 PF01102 Glycophorin_A: Glycop 28.7 65 0.0014 24.3 2.9 27 79-105 66-92 (122)
63 COG0170 SEC59 Dolichol kinase 28.5 93 0.002 26.1 4.1 22 174-195 119-140 (216)
64 PF06305 DUF1049: Protein of u 27.9 97 0.0021 20.2 3.4 10 312-321 30-39 (68)
65 PF03092 BT1: BT1 family; Int 27.2 5.3E+02 0.011 24.2 10.0 78 132-215 325-402 (433)
66 PF10160 Tmemb_40: Predicted m 25.1 4.6E+02 0.0099 22.8 10.1 86 195-283 109-194 (261)
67 PF14184 YrvL: Regulatory prot 24.6 3.3E+02 0.0071 20.9 11.5 112 206-321 6-118 (132)
68 PF05684 DUF819: Protein of un 23.6 5.9E+02 0.013 23.6 11.6 58 237-297 50-107 (378)
69 PF06800 Sugar_transport: Suga 23.1 5.1E+02 0.011 22.7 10.9 83 225-319 152-234 (269)
70 PRK10739 putative antibiotic t 23.0 4.4E+02 0.0095 21.8 8.5 51 192-246 28-78 (197)
71 TIGR00881 2A0104 phosphoglycer 22.6 5.4E+02 0.012 22.7 10.6 13 183-195 48-60 (379)
72 PF11457 DUF3021: Protein of u 21.9 3.6E+02 0.0078 20.4 16.6 19 208-226 11-29 (136)
73 PF03904 DUF334: Domain of unk 21.7 5E+02 0.011 22.0 7.3 61 195-256 141-210 (230)
74 PRK01637 hypothetical protein; 21.4 5.6E+02 0.012 22.5 19.2 15 182-196 110-124 (286)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4e-50 Score=374.59 Aligned_cols=335 Identities=24% Similarity=0.324 Sum_probs=316.7
Q ss_pred CchhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhh-cC-CC
Q 018609 1 MEQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFK-AN-FR 78 (353)
Q Consensus 1 ~~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~-~~-~g 78 (353)
+++|+++++++.++|+.+.+.+|+++..++.|+..++..+++.+|++||+|.|++.+++++++|+++|++|+++ ++ +|
T Consensus 116 ~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lG 195 (455)
T COG0534 116 FFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLG 195 (455)
T ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999 67 99
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcccc-ccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChh
Q 018609 79 IVGAALAIGLSYCLNAVILALYMRYSSS-CEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSK 157 (353)
Q Consensus 79 i~g~a~at~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (353)
+.|+|+||++++.+++++..++++++++ ......+..+.+++.+|+++|+|+|..+++..+...+...+.+++++|+.
T Consensus 196 v~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~- 274 (455)
T COG0534 196 VAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTV- 274 (455)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChH-
Confidence 9999999999999999999999988865 22233344467789999999999999999999999999999999999955
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q 018609 158 LETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDK 237 (353)
Q Consensus 158 ~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 237 (353)
++|+|+++.++.++..++..|++++.+++++|++|+||+|++++..+.+..+++++++..+.+++++++++..+|++|+
T Consensus 275 -~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~ 353 (455)
T COG0534 275 -ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDP 353 (455)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHH
Q 018609 238 DVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQ 317 (353)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 317 (353)
|+.+.+..++++..+..++++.+.+..+.+||.||++.+++.++++.+.+.+|+.+++.... +|..|+|+++..++.+.
T Consensus 354 ~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~ 432 (455)
T COG0534 354 EVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILR 432 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877 89999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHH
Q 018609 318 AIVLAIITVTTNWRKQARMAR 338 (353)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~ 338 (353)
.+....++++.+|+++..+.+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~ 453 (455)
T COG0534 433 AILLLLRLRRGRWRRKAVAAA 453 (455)
T ss_pred HHHHHHHHHHhhhhhhhhhcc
Confidence 999999999998887765443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=3.4e-45 Score=344.39 Aligned_cols=329 Identities=17% Similarity=0.148 Sum_probs=304.1
Q ss_pred chhhhhhHhC--CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhh----c
Q 018609 2 EQSSINRLER--QDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFK----A 75 (353)
Q Consensus 2 ~~~~i~~~l~--~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~----~ 75 (353)
++++++++++ .|+|+.+.+.+|+++..++.|+..+...+.+++|+.||++.+++.+++..++|+++|++++++ +
T Consensus 129 ~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~ 208 (478)
T PRK10189 129 FGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQ 208 (478)
T ss_pred hHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCC
Confidence 5688999994 799999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhcc-c-cccccccC-CChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Q 018609 76 NFRIVGAALAIGLSYCLNAVILALYMRYS-S-SCEKTRVF-IFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGL 152 (353)
Q Consensus 76 ~~gi~g~a~at~i~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 152 (353)
++|+.|+++||.+++.+..++..++++++ + ..+.++++ +.+.+++.+|+++|+|+|..++...........+.++++
T Consensus 209 ~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~ 288 (478)
T PRK10189 209 GLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAG 288 (478)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998877766543 2 22222222 123467899999999999999999999888888888999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 018609 153 LPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYA 232 (353)
Q Consensus 153 l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 232 (353)
+|+. ++|+++++.++.++..++..|++++.++++||++|+||+|++|+..+.+..+++++++.++++++++++++..+
T Consensus 289 ~G~~--~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l 366 (478)
T PRK10189 289 MGTS--VIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASF 366 (478)
T ss_pred cCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9954 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHH
Q 018609 233 FNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMT 312 (353)
Q Consensus 233 f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~ 312 (353)
|++|+|+.+.+..++++.++..++++.+.+..+.+||.||++.++.+++.+.+++.+|+.+++....++|..|+|++..+
T Consensus 367 Ft~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~ 446 (478)
T PRK10189 367 YTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFL 446 (478)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHH
Q 018609 313 GSAVQAIVLAIITVTTNWRK 332 (353)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~ 332 (353)
++.+..++...++++.+|++
T Consensus 447 ~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 447 DWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHcCcccc
Confidence 99999999999999999988
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=8.6e-45 Score=341.46 Aligned_cols=325 Identities=22% Similarity=0.310 Sum_probs=296.8
Q ss_pred chhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhh----cCC
Q 018609 2 EQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFK----ANF 77 (353)
Q Consensus 2 ~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~----~~~ 77 (353)
+.++++++++.|||+.+.+.+|+++..++.|+..+...+++++|+.|+++++++.++...++|+++|++|+++ |++
T Consensus 109 ~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~ 188 (464)
T PRK00187 109 NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKL 188 (464)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999987 379
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcccccc-cc-ccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC
Q 018609 78 RIVGAALAIGLSYCLNAVILALYMRYSSSCE-KT-RVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPN 155 (353)
Q Consensus 78 gi~g~a~at~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 155 (353)
|+.|+++||.+++....+.+.++++++++.+ .+ +++..+.+++..|+++|+++|.+++++.+.....+++.+++++|+
T Consensus 189 Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~ 268 (464)
T PRK00187 189 GLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGS 268 (464)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 9999999999999988887777776543321 11 122234567889999999999999999999999999999999995
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 018609 156 SKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNS 235 (353)
Q Consensus 156 ~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 235 (353)
. ++++++++.++..+...+..|++.+..+++||++|+||+|++++..+.++.++++++++.+++++++++++.++|++
T Consensus 269 ~--alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~ 346 (464)
T PRK00187 269 T--QLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLD 346 (464)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4 99999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred --ch---HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHH
Q 018609 236 --DK---DVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGI 310 (353)
Q Consensus 236 --~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~ 310 (353)
|+ |+.+.+..++++.+++.++++++.++.+++||.||++.++++++++.+++++|+.|++.+.+++|+.|+|+++
T Consensus 347 ~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~ 426 (464)
T PRK00187 347 RNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGL 426 (464)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHH
Confidence 44 7889999999999999999999999999999999999999999999889999999999998889999999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 018609 311 MTGSAVQAIVLAIITVTT 328 (353)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~ 328 (353)
.+++.+..+.....++.+
T Consensus 427 ~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 427 ALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988877666443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=4.3e-43 Score=330.50 Aligned_cols=329 Identities=21% Similarity=0.352 Sum_probs=304.3
Q ss_pred chhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhh----cCC
Q 018609 2 EQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFK----ANF 77 (353)
Q Consensus 2 ~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~----~~~ 77 (353)
++++++++++.|+++.+.+.+|+++..++.|+..+..++++++|+.|+++++++.++++.++|+++|++++++ +++
T Consensus 112 ~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~ 191 (456)
T PRK01766 112 AVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPEL 191 (456)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999975 579
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcccccc--ccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC
Q 018609 78 RIVGAALAIGLSYCLNAVILALYMRYSSSCE--KTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPN 155 (353)
Q Consensus 78 gi~g~a~at~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 155 (353)
|+.|+++||.+++++..++..++++++++.+ +.+.++.+.+++..|+++++++|..++...+...+..+..+++++|+
T Consensus 192 Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~ 271 (456)
T PRK01766 192 GGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGT 271 (456)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 9999999999999999999988887654321 11222234567789999999999999999999999999999999995
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 018609 156 SKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNS 235 (353)
Q Consensus 156 ~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 235 (353)
. ++++++++.++.++...+..|++.+..+.+||++|+||++++++..+.++.+++.++++.+++++.+++++.++|++
T Consensus 272 ~--~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~ 349 (456)
T PRK01766 272 V--TVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTD 349 (456)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHH
Q 018609 236 DKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSA 315 (353)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~ 315 (353)
|||+.+.+..++++..+..++++++....+++||.||++.++.+++++.+++++|..+++...+++|..|+|+++.+++.
T Consensus 350 d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~ 429 (456)
T PRK01766 350 DPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLT 429 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988999999999998888999999999999999
Q ss_pred HHHHHHHHHHHhcCHHH
Q 018609 316 VQAIVLAIITVTTNWRK 332 (353)
Q Consensus 316 ~~~~~~~~~~~~~~~~~ 332 (353)
+..++...++.+.+|+.
T Consensus 430 ~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 430 AAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888887776654
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=4.8e-43 Score=329.06 Aligned_cols=322 Identities=15% Similarity=0.117 Sum_probs=294.1
Q ss_pred chhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcch
Q 018609 2 EQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVG 81 (353)
Q Consensus 2 ~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi~g 81 (353)
++++++++++.|+++.+.+.+|+++..++.|+..+..+..+.+|+.|+++.+++.++...++|+.+|+++++++++|+.|
T Consensus 113 ~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~G 192 (453)
T PRK09575 113 FADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTG 192 (453)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHH
Q 018609 82 AALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETS 161 (353)
Q Consensus 82 ~a~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 161 (353)
+++||.+++.+..++..+++++++...+...+..+.+++..|+++++|+|..++...........+.+++++|+ +.+++
T Consensus 193 aa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lA 271 (453)
T PRK09575 193 AAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVG 271 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHH
Confidence 99999999999999988777655432211112234567889999999999999999999999999999998885 23799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-chHHH
Q 018609 162 VLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNS-DKDVV 240 (353)
Q Consensus 162 ~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~-~~~~~ 240 (353)
+++++.++..+...+..|++.+..+++||++|+||+|++++..+.++.+++..+++.+++++++++++..+|++ |||+.
T Consensus 272 a~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~ 351 (453)
T PRK09575 272 AYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELI 351 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 78999
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHH
Q 018609 241 NYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIV 320 (353)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~ 320 (353)
+.+..++++..++.+++++..+..+.+||.||++.++..++.. +++++|..+++... +|+.|+|+++.+++.+..++
T Consensus 352 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~ 428 (453)
T PRK09575 352 AETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLV 428 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887 67899999998754 69999999999999998887
Q ss_pred HHHHHHh
Q 018609 321 LAIITVT 327 (353)
Q Consensus 321 ~~~~~~~ 327 (353)
...++++
T Consensus 429 ~~~~~~~ 435 (453)
T PRK09575 429 VAPMLWR 435 (453)
T ss_pred HHHHHHH
Confidence 7766654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=322.52 Aligned_cols=321 Identities=13% Similarity=0.086 Sum_probs=276.2
Q ss_pred chhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcch
Q 018609 2 EQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVG 81 (353)
Q Consensus 2 ~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi~g 81 (353)
+.+++++++|.|+|+.+.+.+|+++..++.|+..+..++++++|+.||+|.+++.+++++++|+++|++|++++++|+.|
T Consensus 110 ~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~G 189 (441)
T PRK10367 110 LIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQG 189 (441)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccccCCChhh-HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHH
Q 018609 82 AALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDI-FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLET 160 (353)
Q Consensus 82 ~a~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (353)
+++||.+++.+.+++..++++++++.++...+..+.+ ++..|+++|+|.|..+++..+...+.+.+.+++++|+. ++
T Consensus 190 aa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~--al 267 (441)
T PRK10367 190 AALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSD--II 267 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHH--HH
Confidence 9999999999999888777765432221111111222 34789999999999999999999999999999999954 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHH
Q 018609 161 SVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVV 240 (353)
Q Consensus 161 a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 240 (353)
++|+++.++.++..++..|++++.++++||++|+||+|++|+..+.+.+++.+.+.+++++++++++++..+|++|+|+.
T Consensus 268 Aa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~ 347 (441)
T PRK10367 268 AVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQ 347 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHhhcC---cchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHH
Q 018609 241 NYVSELVPLLSFSIIMDSLQSVLSGVARGTG---WQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQ 317 (353)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~ 317 (353)
+.+..++++..+..+.........++++|.+ |++.++.++.++.++..+ .. +++|..|+|++..+++.+.
T Consensus 348 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-----~~--~~~g~~Gvw~a~~~~~~~~ 420 (441)
T PRK10367 348 QLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-----TL--PWLGNHGLWLALTVFLALR 420 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH-----HH--HHcCchHHHHHHHHHHHHH
Confidence 9999999998876443334444444455555 599999999998654222 11 2479999999999999999
Q ss_pred HHHHHHHHHhcCHHH
Q 018609 318 AIVLAIITVTTNWRK 332 (353)
Q Consensus 318 ~~~~~~~~~~~~~~~ 332 (353)
++++..++++. |++
T Consensus 421 ~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 421 GLSLAAIWRRH-WRN 434 (441)
T ss_pred HHHHHHHHHHH-Hhc
Confidence 99888765544 744
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5.6e-32 Score=258.34 Aligned_cols=317 Identities=14% Similarity=0.066 Sum_probs=278.2
Q ss_pred chhhhhhHh--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 018609 2 EQSSINRLE--RQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRI 79 (353)
Q Consensus 2 ~~~~i~~~l--~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi 79 (353)
+++++.+++ |.|++..+.+.+|+++..++.|+..+....++++|++||++.+++.++..++++++..+++ .+++|.
T Consensus 103 ~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~ 180 (502)
T TIGR01695 103 FAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQ 180 (502)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--Hcccch
Confidence 467888888 6788899999999999999999999999999999999999999999999998887754333 457899
Q ss_pred chhH--HHHHHHHHHHHHHHHHHHhccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChh
Q 018609 80 VGAA--LAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSK 157 (353)
Q Consensus 80 ~g~a--~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (353)
.|++ +++++++.+..++..++.++++. + .++++ +.+++..|++++++.|..+++...++...+|..+.+.+|++
T Consensus 181 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~- 256 (502)
T TIGR01695 181 YSLALAIGVLIGGVAQLLIQLPFLRKAGF-L-LKPRF-NFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIG- 256 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-c-ccCcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-
Confidence 9988 99999999999888777765431 1 11111 23456789999999999999999999999999888887755
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-
Q 018609 158 LETSVLSICLTISSTHYF-IPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNS- 235 (353)
Q Consensus 158 ~~~a~~~i~~~i~~~~~~-~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~- 235 (353)
++++|+.+.++.++... +..+++++..|.+|+++|+||+|++++..+++.++...++.+.+++++++++++..+|.+
T Consensus 257 -~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~ 335 (502)
T TIGR01695 257 -SVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFER 335 (502)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88999999999988765 578999999999999999999999999999999999999999999999999999998865
Q ss_pred ---chHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHH
Q 018609 236 ---DKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMT 312 (353)
Q Consensus 236 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~ 312 (353)
|+|..+.+..++++++++.++.++...+.+.+++.||++.+++.+..+ .++++++++++... +|..|+|+++.+
T Consensus 336 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~l~~~l~~~--~G~~G~~~a~~i 412 (502)
T TIGR01695 336 GAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNALLSLLLIFP--LGLVGIALATSA 412 (502)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHHHHHHHHHH--HhhhHHHHHHHH
Confidence 567888899999999999999999999999999999999999999998 67899999988754 799999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 018609 313 GSAVQAIVLAIITVTT 328 (353)
Q Consensus 313 ~~~~~~~~~~~~~~~~ 328 (353)
++.+..++...+.+|+
T Consensus 413 ~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 413 ASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999988887777664
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=254.73 Aligned_cols=345 Identities=46% Similarity=0.767 Sum_probs=328.1
Q ss_pred chhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcch
Q 018609 2 EQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVG 81 (353)
Q Consensus 2 ~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi~g 81 (353)
++++|+..+++|+++...+..|.++.++..+.......++.++|++++..+..+......++|+.+++++++.+++|+.|
T Consensus 128 ~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~G 207 (473)
T KOG1347|consen 128 NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKG 207 (473)
T ss_pred ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHH
Q 018609 82 AALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETS 161 (353)
Q Consensus 82 ~a~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 161 (353)
++++..+++......+..|..... +...|..+... ++.+++++|.+.|.+++.-.+++.+.+.....+.++++..+++
T Consensus 208 aala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~ 285 (473)
T KOG1347|consen 208 AALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLA 285 (473)
T ss_pred chHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 999999999999999999987765 55667666666 8999999999999999999999999999999999998777899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHH
Q 018609 162 VLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVN 241 (353)
Q Consensus 162 ~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 241 (353)
+.++..++....+++..+++.+..+.+++.+|++|++++|.....+...++..+...+..++..++.+.++|++|+|+.+
T Consensus 286 ~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~ 365 (473)
T KOG1347|consen 286 SQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLD 365 (473)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHH
Q 018609 242 YVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVL 321 (353)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~ 321 (353)
......++.+...+.++.+.+..+..+|.|.+++..++++...+++++|+...+.+..++|.+|.|.++..+..+....+
T Consensus 366 ~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l 445 (473)
T KOG1347|consen 366 LVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVL 445 (473)
T ss_pred HHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999988888888
Q ss_pred HHHHHhcCHHHHHHHHHHhhhcCCCCC
Q 018609 322 AIITVTTNWRKQARMARERIFEGTYSA 348 (353)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (353)
.....+.+|+++..+.+++...++.+.
T Consensus 446 ~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 446 AIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred HHheeeccHHHHHHHHHHHHHhhccCC
Confidence 888889999999999999887766553
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.97 E-value=6e-29 Score=225.97 Aligned_cols=247 Identities=26% Similarity=0.331 Sum_probs=226.3
Q ss_pred chhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHh-hcC-CCc
Q 018609 2 EQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVF-KAN-FRI 79 (353)
Q Consensus 2 ~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~-~~~-~gi 79 (353)
+++++.++++.|++..+.+.+|++++.++.|+..+..+..+.+|+.||++.+++.++++.++|+.+++++++ .++ +|+
T Consensus 93 ~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~ 172 (342)
T TIGR00797 93 FIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGI 172 (342)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCcccccc
Confidence 578899999989999999999999999999999999999999999999999999999999999999999998 677 899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhH
Q 018609 80 VGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLE 159 (353)
Q Consensus 80 ~g~a~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (353)
.|+++++.+++++.+++..++.+++++.+.++++..+.+++..|+++++++|..++++..++....+..+++.+|++ +
T Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~--~ 250 (342)
T TIGR00797 173 VGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSI--A 250 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcH--H
Confidence 99999999999999999888887644443333333345678899999999999999999999999999999998854 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHH
Q 018609 160 TSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDV 239 (353)
Q Consensus 160 ~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 239 (353)
+++|+++.++.++...+..+++.+..|.+++++|+||+|+.++..++++++.+..+++.+++++++++++.++|++|||+
T Consensus 251 v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 330 (342)
T TIGR00797 251 LAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEV 330 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHH
Q 018609 240 VNYVSELVPLL 250 (353)
Q Consensus 240 ~~~~~~~l~~~ 250 (353)
.+++..++++.
T Consensus 331 ~~~~~~~~~~~ 341 (342)
T TIGR00797 331 LELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHh
Confidence 99999888764
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.97 E-value=4.4e-28 Score=230.74 Aligned_cols=316 Identities=17% Similarity=0.133 Sum_probs=260.9
Q ss_pred hhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhh-----cCC
Q 018609 3 QSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFK-----ANF 77 (353)
Q Consensus 3 ~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~-----~~~ 77 (353)
++++.+.++.+++. ..|+++..++.|+..+....++.+|+++|.|..+..++++.++|+.++..++.. .++
T Consensus 102 ~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~ 177 (488)
T TIGR02900 102 SPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEY 177 (488)
T ss_pred hHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 45555656555543 357888999999999999999999999999999999999999999887666543 457
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcccccc--ccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC--
Q 018609 78 RIVGAALAIGLSYCLNAVILALYMRYSSSCE--KTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLL-- 153 (353)
Q Consensus 78 gi~g~a~at~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l-- 153 (353)
|+.|+++++.+++.++.+...++.+++++.+ ..+.+..+.+++.+|+++++++|..++++...+....|..++++.
T Consensus 178 ~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~ 257 (488)
T TIGR02900 178 AVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLV 257 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998877765543221 112222344567899999999999999999999999998887653
Q ss_pred --CCh-hhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018609 154 --PNS-KLETSVL----SICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCR 226 (353)
Q Consensus 154 --~~~-~~~~a~~----~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (353)
|.. ..+.+.+ +++.++.++...+..+++.+..|.+++++|+||+|+.++..+++..++..++.+.++.+.+++
T Consensus 258 ~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (488)
T TIGR02900 258 IAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIP 337 (488)
T ss_pred HcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1122222 355677777777889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHh
Q 018609 227 YVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGL 306 (353)
Q Consensus 227 ~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~ 306 (353)
+++..+|.++++ +..+++++++..++..+.....+.+++.||++.+++.++++ .++++++.+++...+.+|..|+
T Consensus 338 ~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~i~l~~~l~~~~~~G~~Ga 412 (488)
T TIGR02900 338 DELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AIVKIILLFVLTSIPSINIYGY 412 (488)
T ss_pred HHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHhccccccHHH
Confidence 999998876554 67789999999999999999999999999999999999998 6889999888874456899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 018609 307 WIGIMTGSAVQAIVLAIITVT 327 (353)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~ 327 (353)
|+++.+++.+..++..+..+|
T Consensus 413 aia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 413 AITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888777765
No 11
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.96 E-value=1.2e-25 Score=210.23 Aligned_cols=317 Identities=15% Similarity=0.099 Sum_probs=279.7
Q ss_pred chhhhhhHh--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCC-
Q 018609 2 EQSSINRLE--RQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFR- 78 (353)
Q Consensus 2 ~~~~i~~~l--~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~g- 78 (353)
+++++.+++ |.|++..+.+.+++++..+..++..+..++.+++|+++|...+....+..++.-++...++.. ..|
T Consensus 77 fa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~ 154 (451)
T PF03023_consen 77 FAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQ 154 (451)
T ss_pred HHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCc
Confidence 578888887 568999999999999999999999999999999999999999999888888776665444433 355
Q ss_pred --cchhHHHHHHHHHHHHHHHHHHHhccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCh
Q 018609 79 --IVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNS 156 (353)
Q Consensus 79 --i~g~a~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (353)
+.+.++|.+++.+++.++.+...++.+...+. ++ +...+..|++++...|..+.+...++...++..+.+.+++|
T Consensus 155 ~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G 231 (451)
T PF03023_consen 155 ENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRP--KF-DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG 231 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccc--cC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88999999999999999999888765432111 11 12234689999999999999999999999999999999987
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-
Q 018609 157 KLETSVLSICLTISSTHYF-IPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFN- 234 (353)
Q Consensus 157 ~~~~a~~~i~~~i~~~~~~-~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~- 234 (353)
++++.+.+.++.++... +..+++++..|..+++..+||.++.++..+++++..+.+.++.++.++.+++++..+..
T Consensus 232 --~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~ 309 (451)
T PF03023_consen 232 --SVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFE 309 (451)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHc
Confidence 89999999999999875 56799999999999999999999999999999999999999999999999999988663
Q ss_pred ---CchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHH
Q 018609 235 ---SDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIM 311 (353)
Q Consensus 235 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~ 311 (353)
-|+|..+....++++++++.++.++...+...+.+.||+|.++..++++ .++++.+++++... +|..|+.+++.
T Consensus 310 rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~--~g~~Glala~s 386 (451)
T PF03023_consen 310 RGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPF--FGVAGLALATS 386 (451)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 3677889999999999999999999999999999999999999999998 88899999887765 79999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 018609 312 TGSAVQAIVLAIITVTT 328 (353)
Q Consensus 312 ~~~~~~~~~~~~~~~~~ 328 (353)
++..+.+++.....+|+
T Consensus 387 l~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 387 LSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888887765
No 12
>PRK15099 O-antigen translocase; Provisional
Probab=99.96 E-value=4.6e-26 Score=212.33 Aligned_cols=308 Identities=11% Similarity=0.004 Sum_probs=252.9
Q ss_pred chhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcch
Q 018609 2 EQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVG 81 (353)
Q Consensus 2 ~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi~g 81 (353)
+++++...++.+++. .++.++..+..+...+.....+.+|+.|+++.++...+++.++|+.+ +++.+.. .|+.|
T Consensus 101 ~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~G 174 (416)
T PRK15099 101 AAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEG 174 (416)
T ss_pred HHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchH
Confidence 467888877776642 24566667767777888899999999999999999999999999887 5555442 39999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-cCCChhhHH
Q 018609 82 AALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSG-LLPNSKLET 160 (353)
Q Consensus 82 ~a~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 160 (353)
+++||++++.+..+...++++++++.+.++.++ +.+++..|+++++|.|...++....+....++.+++ .+|+ +++
T Consensus 175 a~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~--~~v 251 (416)
T PRK15099 175 ALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSW--DEV 251 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHh
Confidence 999999999999888777776554322221122 346778999999999999999999999999998885 7784 499
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHH
Q 018609 161 SVLSICLTISS-THYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDV 239 (353)
Q Consensus 161 a~~~i~~~i~~-~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 239 (353)
+.|+.+.++.+ +...+..+++++..|.++++ +|.|+.++..++........+++.++.++++++++..++.+|+
T Consensus 252 g~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~-- 326 (416)
T PRK15099 252 GIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK-- 326 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--
Confidence 99999999977 55788999999999999995 6789999999999999999999999999999999999997654
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHH
Q 018609 240 VNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAI 319 (353)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~ 319 (353)
.+.+.++.++++++.++...+..+...+-+.++++......+.. .++++++++++.+. +|..|+++++.+++.+..+
T Consensus 327 ~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~ 403 (416)
T PRK15099 327 FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFS 403 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHH
Confidence 22367788888888888887777777677777887777777665 78889999998765 7999999999999999988
Q ss_pred HHHHHHH
Q 018609 320 VLAIITV 326 (353)
Q Consensus 320 ~~~~~~~ 326 (353)
...+...
T Consensus 404 ~~~~~~~ 410 (416)
T PRK15099 404 LCCGVFL 410 (416)
T ss_pred HHHHHHH
Confidence 7765554
No 13
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.95 E-value=2.9e-25 Score=207.65 Aligned_cols=210 Identities=19% Similarity=0.241 Sum_probs=201.0
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 018609 118 IFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNP 197 (353)
Q Consensus 118 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~ 197 (353)
.++..|+++++++|..++++.+.+...+|++++++++ ++++++.++++++..+...+..+++.+..+++||++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 4668999999999999999999999999999999999 45999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 018609 198 QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 277 (353)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 277 (353)
+++++..+.++.++.+.++++.++.+.+++++..+++.++|+.+.+.+|+++..++.++..++..+.+++|+.||++.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHH-hC-CCchHhhHHHHHHHHHHHHHHHHHHHhcCH
Q 018609 278 YVNLGAYYIVGIPLASVLCFV-LN-LRGKGLWIGIMTGSAVQAIVLAIITVTTNW 330 (353)
Q Consensus 278 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (353)
++++++ .+.|+.+++++.+. ++ +|+.|+++|+.+++.+.+++...++.+++.
T Consensus 170 ~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999998 89999999999988 56 999999999999999999998888877653
No 14
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.94 E-value=5e-25 Score=207.52 Aligned_cols=208 Identities=19% Similarity=0.083 Sum_probs=191.0
Q ss_pred hhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018609 117 DIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGN 196 (353)
Q Consensus 117 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~ 196 (353)
.+++..|+++++++|.+++++.+.+...+|+.+++++|+ +++++++++.++..+...+..|++++..+++||++|+||
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~--~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~ 81 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGP--EALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGD 81 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456789999999999999999999999999999999985 489999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhh
Q 018609 197 PQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIG 276 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 276 (353)
+|++++..+.++.++++++++..++.+ +.+++..+|+.|||+.+.+.+|+++..++.++..+...+.+++|+.||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 160 (464)
T PRK00187 82 IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999998887766 5688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH----hCCCchHhhHHHHHHHHHHHHHHHHHHHhc
Q 018609 277 AYVNLGAYYIVGIPLASVLCFV----LNLRGKGLWIGIMTGSAVQAIVLAIITVTT 328 (353)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 328 (353)
++.++++ .++++++++++.+. +++|+.|+++++.+++....+....+++++
T Consensus 161 ~~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 161 MVISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 77899999998864 358999999999999988777665555543
No 15
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.94 E-value=9.4e-25 Score=203.99 Aligned_cols=206 Identities=15% Similarity=0.114 Sum_probs=193.4
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 018609 120 SCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQA 199 (353)
Q Consensus 120 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~ 199 (353)
++.|+++|+++|.+++++.+.+...+|+.++++++. +.++++.+++.++.++...+..+++.+..+++||++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 468899999999999999999999999999999853 4479999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHH
Q 018609 200 AQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYV 279 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 279 (353)
+++..++++.++++.++++.++...+.+++..+++.|||+.+.+.+|+++..++.++......+.+.+|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHHh
Q 018609 280 NLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 327 (353)
Q Consensus 280 ~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 327 (353)
++++ .++++++++++.+.+++|+.|+++++.+++.+.+++...++.+
T Consensus 165 ~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 7889999999999889999999999999999988776666654
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.94 E-value=7.1e-25 Score=206.72 Aligned_cols=204 Identities=17% Similarity=0.167 Sum_probs=191.1
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 018609 120 SCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQA 199 (353)
Q Consensus 120 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~ 199 (353)
+..|+++++++|.+++++.+.....+|+.+++++|+ +++|+++++.++..+...+..|++++..+++||++|+||+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 458999999999999999999999999999999995 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--CchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 018609 200 AQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFN--SDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 277 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 277 (353)
+++..+.++.++++.+++.+++.+++++++..+|+ .|+|+.+.+.+|+++..++.++..+...+.+++||.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHH----hCCCchHhhHHHHHHHHHHHHHHHHHHH
Q 018609 278 YVNLGAYYIVGIPLASVLCFV----LNLRGKGLWIGIMTGSAVQAIVLAIITV 326 (353)
Q Consensus 278 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 326 (353)
.+++++ .++++++++++.+. +++|+.|+|+++.+++.+..++....+.
T Consensus 184 ~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 88899999998874 4789999999999999998877655444
No 17
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.94 E-value=1.8e-22 Score=186.48 Aligned_cols=319 Identities=15% Similarity=0.056 Sum_probs=274.0
Q ss_pred chhhhhhHh-CC--CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018609 2 EQSSINRLE-RQ--DPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFR 78 (353)
Q Consensus 2 ~~~~i~~~l-~~--~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~g 78 (353)
+++++.+.+ +. |++....+....+++.|.+++..+.....+.+++.++...+.+..+..|+.-+.....+..+.+.-
T Consensus 111 ~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~ 190 (518)
T COG0728 111 FAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPP 190 (518)
T ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhH
Confidence 356666444 33 344444788888999999999999999999999999999999999998888886655555443334
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhh
Q 018609 79 IVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKL 158 (353)
Q Consensus 79 i~g~a~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (353)
..+.++++.++-+.+.++.+..++|.+...+..+.+ +.+..|++.+...|..++....++...+|+.+.+.+.++
T Consensus 191 ~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~---~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G-- 265 (518)
T COG0728 191 LLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF---KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG-- 265 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence 678899999999999999999998875332222222 225789999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc---
Q 018609 159 ETSVLSICLTISSTHY-FIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFN--- 234 (353)
Q Consensus 159 ~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~--- 234 (353)
+++.+..+.++.++.. .+..++++...|..|++..++|.++.++..+.+++.+...++|.++.+..+++++.....
T Consensus 266 sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG 345 (518)
T COG0728 266 SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERG 345 (518)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8999999999999997 577899999999999999999999999999999999999999999999999999988662
Q ss_pred -CchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHH
Q 018609 235 -SDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTG 313 (353)
Q Consensus 235 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~ 313 (353)
-+++...+..+.+..++++.++.....++...+.+++|+|.|+.+++++ .++++.+++.+... +|..|.+++..++
T Consensus 346 ~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~l~~~l~~~--~~~~giala~s~a 422 (518)
T COG0728 346 AFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNILLNLLLIPP--LGHVGLALATSLA 422 (518)
T ss_pred CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHHHHHHHHhh--ccchHHHHHHHHH
Confidence 2577788899999999999999999999999999999999999999998 88999999665544 7889999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 018609 314 SAVQAIVLAIITVTT 328 (353)
Q Consensus 314 ~~~~~~~~~~~~~~~ 328 (353)
.++++.+++...+|+
T Consensus 423 ~~~~~~ll~~~l~k~ 437 (518)
T COG0728 423 AWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHHHHHHHHh
Confidence 988888877776664
No 18
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.93 E-value=5.5e-24 Score=200.09 Aligned_cols=208 Identities=13% Similarity=0.102 Sum_probs=195.5
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018609 118 IFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLL-PNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGN 196 (353)
Q Consensus 118 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~ 196 (353)
+++..|+++++++|..++++.+.+...+|+.+++++ |+ +++++++++.++.++...+..+++.+..+++||++|+||
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~--~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~ 84 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGA--EGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGD 84 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 345789999999999999999999999999999996 74 489999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhh
Q 018609 197 PQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIG 276 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 276 (353)
+|++++..+.++.++++.+++.+++.+++++++..+|+.|+|+.+.+.+|+++..++.++..+.....+.+|+.||++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 164 (453)
T PRK09575 85 LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLA 164 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHHhc
Q 018609 277 AYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 328 (353)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 328 (353)
+..++.+ .++++++++++.+.+++|+.|+++++.+++.+..++...++.++
T Consensus 165 ~~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 165 TGLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999998 78999999999988889999999999999999988877666544
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.93 E-value=2.5e-23 Score=196.27 Aligned_cols=210 Identities=16% Similarity=0.156 Sum_probs=194.3
Q ss_pred hhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018609 117 DIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGN 196 (353)
Q Consensus 117 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~ 196 (353)
..++.+|+++++++|..++++..++...+|..+++++|+. ++++++++.++..+...+..|++.+..+.+||++|++|
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~--~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSAT--DLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3467899999999999999999999999999999999854 88999999999888888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhh
Q 018609 197 PQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIG 276 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 276 (353)
+|++++..+.++.+++..+++++++++++++++..+++.|+|+.+++..|+++..++.++..+...+.+++|+.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH----hCCCchHhhHHHHHHHHHHHHHHHHHHHhcC
Q 018609 277 AYVNLGAYYIVGIPLASVLCFV----LNLRGKGLWIGIMTGSAVQAIVLAIITVTTN 329 (353)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 329 (353)
++.+.++ .++++++++++.+. +++|+.|+++++.+++.+..++...+.+|++
T Consensus 164 ~~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 164 MVIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999998 67899999988753 4689999999999999999988877666543
No 20
>PRK10459 colanic acid exporter; Provisional
Probab=99.87 E-value=2.3e-18 Score=164.13 Aligned_cols=291 Identities=11% Similarity=0.050 Sum_probs=236.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 018609 22 NFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYM 101 (353)
Q Consensus 22 ~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi~g~a~at~i~~~~~~~~~~~~~ 101 (353)
.++++..+..++..+....++.+|.+++.+......+...++..++...+.+ .+.|+.+.+++.+++..+..+...+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~ 191 (492)
T PRK10459 113 PLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG 191 (492)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677778888888888889999999999999999888888887777665554 468899999999999888776554333
Q ss_pred hccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHH-HHHHH
Q 018609 102 RYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYF-IPYGI 180 (353)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~-~~~~~ 180 (353)
+++ .++. + +.+++..|++++++.|...++....+....|..+++.+.. +.+++.|+.+.++.++... +...+
T Consensus 192 ~~~--~~~~---~-~~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i 264 (492)
T PRK10459 192 RKI--YRPA---L-HFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPII 264 (492)
T ss_pred ccc--CCcc---c-eecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 221 1111 1 1235678999999999999999999999999998887642 4489999999999887544 45567
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHH
Q 018609 181 GAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQ 260 (353)
Q Consensus 181 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (353)
+....|..++. ++|.++.++..++...+...++++..+.+.++++++..++.+++ .+.+...++++++...+....
T Consensus 265 ~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~ 340 (492)
T PRK10459 265 TRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVG 340 (492)
T ss_pred HHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHH
Confidence 88889999885 57889999999999999999999999999999999887775543 355789999999999999999
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHHh
Q 018609 261 SVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 327 (353)
Q Consensus 261 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 327 (353)
......+++.||++.++..+++. .++.+|..+.+... +|..|+++++.+++.+..........|
T Consensus 341 ~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 341 NPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 67777777666544 699999999999999888777766633
No 21
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.86 E-value=1.8e-19 Score=163.74 Aligned_cols=194 Identities=21% Similarity=0.216 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 018609 131 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVL 210 (353)
Q Consensus 131 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~ 210 (353)
|.+++++...+....++.+++++|++ ++++++++.++..+...+..+++++..+.+++++|++|+|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPV--DLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 78889999999999999999999844 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhH
Q 018609 211 AVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIP 290 (353)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 290 (353)
.+..+++.+++.+++++++..+++.|++..+++..+++++.+..++..+.....+.+|+.||.+.++..++++ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999988888899999999999999999999999999999999999999999988 677888
Q ss_pred HHHHHHH-HhC-CCchHhhHHHHHHHHHHHHHHHHHHHh
Q 018609 291 LASVLCF-VLN-LRGKGLWIGIMTGSAVQAIVLAIITVT 327 (353)
Q Consensus 291 ~~~~l~~-~~~-~g~~g~~~~~~~~~~~~~~~~~~~~~~ 327 (353)
.++++.. ..+ +|..|+++++.+++.+..++...+.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888876 566 789999999999999988887766654
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.85 E-value=1.8e-21 Score=157.43 Aligned_cols=162 Identities=23% Similarity=0.425 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 018609 131 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVL 210 (353)
Q Consensus 131 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~ 210 (353)
|.+++++.+.+...+++.+++++|+. ++++++++.++..+...+..|++.+..+.+||++|++|+|++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPE--ALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTC--CCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 88999999999999999999999854 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhH
Q 018609 211 AVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIP 290 (353)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 290 (353)
+.+++++.+++.+++++++..+|++|+|+.+.+.+++++..++.++..+.....+++||.||++.+++.++.+.+++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997799999
Q ss_pred HHHH
Q 018609 291 LASV 294 (353)
Q Consensus 291 ~~~~ 294 (353)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 23
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.80 E-value=2.2e-16 Score=150.07 Aligned_cols=280 Identities=18% Similarity=0.150 Sum_probs=227.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHH
Q 018609 19 EACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILA 98 (353)
Q Consensus 19 ~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi~g~a~at~i~~~~~~~~~~ 98 (353)
.....++...+..+........++.+|+.++.+......+.+ ..-....+.+.. .......++...+.........
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 190 (480)
T COG2244 115 VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLL 190 (480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHH
Confidence 334457788999999999999999999999999999884444 112222222221 4466778888888888777776
Q ss_pred HHHhccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 018609 99 LYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPY 178 (353)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~ 178 (353)
++..++++.. .+.. .+..++..|+.++.++|....+....+....|.+++++.-. +.+++.|+.+.++......+..
T Consensus 191 ~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~ 267 (480)
T COG2244 191 ILLGKKKRGL-KRPI-LRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVAS 267 (480)
T ss_pred HHHHHhhhhc-cccc-cCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHH
Confidence 6665222111 1111 11247889999999999999999999999999999987643 4588999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhh
Q 018609 179 GIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDS 258 (353)
Q Consensus 179 ~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~ 258 (353)
+++.+..|..++...++|.++.++..+++.++...++.+..+.+..+++++..++..++.. .+...++++++..++..
T Consensus 268 ~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~ 345 (480)
T COG2244 268 ALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLS 345 (480)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888877554331 28889999999999999
Q ss_pred HHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHH
Q 018609 259 LQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGI 310 (353)
Q Consensus 259 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~ 310 (353)
........+++.|+++..+..+.++ .+.++.+.+++... +|..|+..++
T Consensus 346 ~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 346 LVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHHHh--hhhhhHHHHH
Confidence 9999999999999999999999998 67788888888655 6888888888
No 24
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.57 E-value=4.3e-13 Score=127.84 Aligned_cols=196 Identities=16% Similarity=0.147 Sum_probs=161.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHHHH
Q 018609 126 FSFALPTVVMFCLEWWSFEILILLSGL-LPNSKLETSVLSICLTISSTHYFIP-YGIGAAASTRVSNELGAGNPQAAQLA 203 (353)
Q Consensus 126 ~~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~a~~~i~~~i~~~~~~~~-~~~~~a~~~~vs~~~g~~~~~~~~~~ 203 (353)
.|-+.|..+++........++..++++ +|+ ++.++++.+.++..+...+. .|++++....++++.|++|+|++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~--~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGA--EGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 467889999999999999999999987 474 48899999999988887765 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHH
Q 018609 204 ACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGA 283 (353)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 283 (353)
.+.+..+.+..+++.+++++++.+++...+.+|++. ..++++..+..++..+.....+.+|+.||.+..+..+.++
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999999999999999998877666653 3567888899999999999999999999999999999887
Q ss_pred HHHhhhHHHHHHHH-----HhCCCchHhhHHHHHHHHHHHHHHHHHHHhc
Q 018609 284 YYIVGIPLASVLCF-----VLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 328 (353)
Q Consensus 284 ~~~~~i~~~~~l~~-----~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 328 (353)
.++++.+...+.. ..+.+..|..+++.++..+..+.....++|+
T Consensus 156 -~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~ 204 (488)
T TIGR02900 156 -QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK 204 (488)
T ss_pred -HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544333322 1234567777888888888887766555443
No 25
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.54 E-value=8.2e-13 Score=123.35 Aligned_cols=207 Identities=16% Similarity=0.148 Sum_probs=189.3
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 018609 119 FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISST-HYFIPYGIGAAASTRVSNELGAGNP 197 (353)
Q Consensus 119 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~-~~~~~~~~~~a~~~~vs~~~g~~~~ 197 (353)
..+.|++++++.|.++....+.....++..+++++|+- +.++.++++...+. -..+..|++.+..++.+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l--eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNL--ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch--HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 67889999999999999999999999999999999964 88898888888776 4668889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 018609 198 QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 277 (353)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 277 (353)
+....+.+++.......+++.+.... +.+++...+++||++...+..|.+...+..+.+.....+...+|+.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999998888888886554 66889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHHhcC
Q 018609 278 YVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTN 329 (353)
Q Consensus 278 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 329 (353)
++.... ..+++++++++...+++|..|+.++..+++.........+.....
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~ 231 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG 231 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC
Confidence 999888 889999999999999999999999999999998887777665543
No 26
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.48 E-value=8.1e-12 Score=119.56 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=152.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCChhhHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcCCChHHH
Q 018609 125 FFSFALPTVVMFCLEWWSFEILILLSGL-LPNSKLET-SVLSICLTISSTHYFIPY--GIGAAASTRVSNELGAGNPQAA 200 (353)
Q Consensus 125 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~-a~~~i~~~i~~~~~~~~~--~~~~a~~~~vs~~~g~~~~~~~ 200 (353)
+.|-+.-....++...+...++..++++ +|++ +. ++++.+.++..+...+.. |++.+..+...++.+++ |++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~--~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~ 77 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAG--LTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEA 77 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHH
Confidence 4566667778888888888899999888 7865 67 799999999877765543 57777777666554333 678
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhc--cCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhH
Q 018609 201 QLAACVVMVLAVTEAV-IVGTILFCCRYVLAYAF--NSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 277 (353)
Q Consensus 201 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~f--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 277 (353)
++....+.......+. +.+++.+++++++..++ +.|+|..+.+..|++++.++.++..+.....+++|+.||.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (502)
T TIGR01695 78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPS 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHH
Confidence 8777777776665544 45778888999999988 34677789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhCCCchHhh--HHHHHHHHHHHHHHHHHHHhc
Q 018609 278 YVNLGAYYIVGIPLASVLCFVLNLRGKGLW--IGIMTGSAVQAIVLAIITVTT 328 (353)
Q Consensus 278 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~--~~~~~~~~~~~~~~~~~~~~~ 328 (353)
..+++.. ++.+.. .+....++|..|.. +++.++..+..++.....+|+
T Consensus 158 ~~~i~~~-i~~i~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 207 (502)
T TIGR01695 158 FSPILFN-IGVILS--LLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA 207 (502)
T ss_pred HHHHHHH-HHHHHH--HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9998874 444432 22334568999988 999999998888776655543
No 27
>PRK15099 O-antigen translocase; Provisional
Probab=99.37 E-value=7.5e-11 Score=110.12 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=145.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH-HHhccCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHH
Q 018609 126 FSFALPTVVMFCLEWWSFEILI-LLSGLLPNSKLETSVLSICLTISSTHYFI-PYGIGAAASTRVSNELGAGNPQAAQLA 203 (353)
Q Consensus 126 ~~~~~p~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~a~~~i~~~i~~~~~~~-~~~~~~a~~~~vs~~~g~~~~~~~~~~ 203 (353)
.|.+.................. .+.-.+|++ +.+..+...++..+...+ ..|++++....++++ ++|+|++++.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~--~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~ 79 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPA--GVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAV 79 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--HHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHH
Confidence 4545555556665554444444 444555654 778888888887766665 678888888889988 6889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHH
Q 018609 204 ACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGA 283 (353)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 283 (353)
.+.++.+.+..+++.+++.+++.+++...+..||+ -..+..+..+..++..+.....+.+|+.||++.++...+++
T Consensus 80 ~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~ 155 (416)
T PRK15099 80 VGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD----YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVG 155 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887766665 24566666666667788889999999999999999999888
Q ss_pred HHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHHh
Q 018609 284 YYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 327 (353)
Q Consensus 284 ~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 327 (353)
.++++.+ +++.... .|+.|+.+++.+++.+..+.....+.|
T Consensus 156 -~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 156 -SLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred -HHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677665 4444332 399999999999999987765555543
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.19 E-value=2.8e-09 Score=100.27 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=147.2
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018609 151 GLLPNSKLETSVLSICLTISSTHYFIP--YGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYV 228 (353)
Q Consensus 151 ~~l~~~~~~~a~~~i~~~i~~~~~~~~--~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (353)
..+|.+ .+.++|.++.++..++.... -+++.+..|...+.. +++.|+.++..+....+..+.++.++++.++++++
T Consensus 3 ~~fG~s-~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~ 80 (451)
T PF03023_consen 3 YFFGAS-AEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPP 80 (451)
T ss_pred HHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345664 36789999999999887544 368999999999999 89999999999999999999999999999999999
Q ss_pred hhhhcc--CchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCC---c
Q 018609 229 LAYAFN--SDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLR---G 303 (353)
Q Consensus 229 i~~~f~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g---~ 303 (353)
+..++. .|++..+.+.+.++++.+..++.+...++.+++|+.+|-..+....++. .+..+....++. ...| .
T Consensus 81 iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~-N~~~I~~~~~~~--~~~~~~~i 157 (451)
T PF03023_consen 81 IVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLF-NLSIILSLLLLS--NSWGQENI 157 (451)
T ss_pred HHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHH-HHHHHHHHHHHH--HhcCchHH
Confidence 999984 4789999999999999999999999999999999999999999888776 333333333333 3356 8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCH
Q 018609 304 KGLWIGIMTGSAVQAIVLAIITVTTNW 330 (353)
Q Consensus 304 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (353)
.+..+|+.++..+..++.....+|..+
T Consensus 158 ~~la~g~~~g~~~~~l~~l~~~~~~~~ 184 (451)
T PF03023_consen 158 YALAWGVLIGAIIQFLIQLPYLRRFGF 184 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 889999999999999888877776543
No 29
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.06 E-value=2.8e-08 Score=86.90 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhccccccccc
Q 018609 32 LAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTR 111 (353)
Q Consensus 32 ~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi~g~a~at~i~~~~~~~~~~~~~~~~~~~~~~~ 111 (353)
+.........+++++.++.+.....++...++..++..+++... .++.+..++..++..+..++..++.+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 193 (273)
T PF01943_consen 120 ILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFLG-SSLWGFLLGLVISSLVSLIISLFYLRRKLR----- 193 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 57788889999999999999999999999999988777766653 338899999999999998888888876431
Q ss_pred cCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018609 112 VFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNE 191 (353)
Q Consensus 112 ~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~ 191 (353)
++..+.+++..|++++.+.|...+++...+....|..+++.+.. +++++.|+.+.++......+..++.++..|..++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 194 PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22223347889999999999999999999999999999998754 55899999999999999999999999999999886
Q ss_pred h
Q 018609 192 L 192 (353)
Q Consensus 192 ~ 192 (353)
+
T Consensus 273 ~ 273 (273)
T PF01943_consen 273 W 273 (273)
T ss_pred C
Confidence 3
No 30
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.88 E-value=1.8e-06 Score=81.04 Aligned_cols=206 Identities=14% Similarity=0.082 Sum_probs=158.7
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHhhcCC
Q 018609 118 IFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIP-Y-GIGAAASTRVSNELGAG 195 (353)
Q Consensus 118 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~-~-~~~~a~~~~vs~~~g~~ 195 (353)
+.+..|.....+.-+.++.. ..+.-+..+...+|.+ ...+++.++.++-+++--+. . +++++..|...++..++
T Consensus 6 ~~sllks~~~vs~~Tl~SRi---~G~vRd~~iA~~fGa~-~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~ 81 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRI---LGFVRDVLIAAAFGAG-AAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKE 81 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCc-hHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcc
Confidence 34555555555554444433 4666677888888875 36799999999999987654 3 57899999999999988
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhccC--chHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCc
Q 018609 196 NPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLA-YAFNS--DKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGW 272 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~f~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 272 (353)
+.|++++......-....+.+.++++..++++++. .++.. |++....+....+++.+..++.++.....+++++.++
T Consensus 82 ~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~ 161 (518)
T COG0728 82 GEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNR 161 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCe
Confidence 88888888888888888999999999999999999 55544 3454557888999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHHhc
Q 018609 273 QHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 328 (353)
Q Consensus 273 ~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 328 (353)
-..+...-+.- .+..+.....+....+....+..|+..++-++..+.....++|.
T Consensus 162 F~~~a~aPvl~-Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~ 216 (518)
T COG0728 162 FFIPAFAPVLL-NVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA 216 (518)
T ss_pred echhhhhHHHH-HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988887665 33333233444443332356778889999999998888888775
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.87 E-value=6.3e-07 Score=77.46 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=124.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 018609 22 NFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYM 101 (353)
Q Consensus 22 ~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi~g~a~at~i~~~~~~~~~~~~~ 101 (353)
.++....+..+.....+..++.+++++|.+......+...+...+...++... +.+..+..++..++.++..++..+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (251)
T PF13440_consen 92 WLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNLWSILLAFIISALLALLISFYLL 170 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677788889999999999999999999999999999885444444433 33888999999999998887777644
Q ss_pred hccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHHHH-HHHHH
Q 018609 102 RYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGL-LPNSKLETSVLSICLTISSTHY-FIPYG 179 (353)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~a~~~i~~~i~~~~~-~~~~~ 179 (353)
+++. +.++ +.+..| .+|.+.|....++..+.....|..+++. +| .++++.|+.+.++..... .+..+
T Consensus 171 ~~~~----~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~ 239 (251)
T PF13440_consen 171 RRKL----RLSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSA 239 (251)
T ss_pred cccc----CCCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 1111 222334 7899999999999999999999999998 65 458999999999999887 89999
Q ss_pred HHHHHHHHHHHh
Q 018609 180 IGAAASTRVSNE 191 (353)
Q Consensus 180 ~~~a~~~~vs~~ 191 (353)
+++...|.++|.
T Consensus 240 i~~~~~p~lar~ 251 (251)
T PF13440_consen 240 ISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHhCC
Confidence 999999998863
No 32
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.69 E-value=1.7e-05 Score=75.74 Aligned_cols=204 Identities=10% Similarity=0.015 Sum_probs=157.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--CCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCh-
Q 018609 122 IKEFFSFALPTVVMFCLEWWSFEILILLSGL--LPNSKLETSVLSICLTISSTHY-FIPYGIGAAASTRVSNELGAGNP- 197 (353)
Q Consensus 122 ~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~~g~~~~- 197 (353)
-++.++.......+++...+-..-|.+++.. +.+ .++.+.|++++++-++.. .+...+--+.-..-++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 4788899999999999999999999988888 554 457899999999988774 45667888888888887765533
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhh
Q 018609 198 --------QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARG 269 (353)
Q Consensus 198 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 269 (353)
+++.+.....++....+++++..+....++.+..++.++.-....+...++.++...|+.+++.+..+..++
T Consensus 331 ~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 331 KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 456677778888888888888877777788888877544333334688899999999999999999999999
Q ss_pred cCcchhhHHHHHHH--HHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHHh
Q 018609 270 TGWQHIGAYVNLGA--YYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 327 (353)
Q Consensus 270 ~g~~~~~~~~~~~~--~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 327 (353)
..+.+-....+-.- ..++.+..++++... ++|..|..+|.++....+.+....+++|
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765544333211 134455677888776 7999999999999999999887776654
No 33
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.60 E-value=7.3e-06 Score=64.64 Aligned_cols=79 Identities=24% Similarity=0.287 Sum_probs=73.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 018609 24 SISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRY 103 (353)
Q Consensus 24 l~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi~g~a~at~i~~~~~~~~~~~~~~~ 103 (353)
+++..++.++..+.....+.+++.||+|..+...+.+.++|++++++++ +++|..|+++|+.+++........++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999995 45999999999999999999999888876
Q ss_pred c
Q 018609 104 S 104 (353)
Q Consensus 104 ~ 104 (353)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 34
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.40 E-value=0.00014 Score=63.48 Aligned_cols=186 Identities=20% Similarity=0.164 Sum_probs=113.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 018609 127 SFALPTVVMFCLEWWSFEILILLSG-LLPNSKLETSVLSICLTISSTHYFI-PYGIGAAASTRVSNELGAGNPQAAQLAA 204 (353)
Q Consensus 127 ~~~~p~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~~i~~~i~~~~~~~-~~~~~~a~~~~vs~~~g~~~~~~~~~~~ 204 (353)
|-+.-....+............+++ .+| +++.+.++....+..+...+ ..|++++....++++..+ .++.++..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3334444455554444444444444 456 44889999999998888776 568888888888876643 34444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHH
Q 018609 205 CVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAY 284 (353)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 284 (353)
.......++.+++......+.. .+..++. ...+........++........+.+++.++.+.....++..
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS-----FFGNPSL----SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS- 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HcCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4444444444443333333322 3433322 12222222222257788888999999999999998888887
Q ss_pred HHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHHh
Q 018609 285 YIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 327 (353)
Q Consensus 285 ~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 327 (353)
.+........+... +.+..+..++..++..+..+......+|
T Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 149 SLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433 2348888899999998887777666654
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.34 E-value=0.00048 Score=59.77 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=117.3
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018609 118 IFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLL-PNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGN 196 (353)
Q Consensus 118 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~ 196 (353)
.-..++++.++-.|..+++....+.-.+.+.-+++- .+..+.+|+|+++..+.-++..+...+-+....++.. +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 345788999999999999999999888888877763 3444568999999999999999988888777666633 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HH-HHHHhhhh-hhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcc
Q 018609 197 PQAAQLAACVVMVLAVTEAVIV-GT-ILFCCRYV-LAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQ 273 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 273 (353)
.+ |+....++.....+...+ .. ..--++++ +.++++.||++.+.+...+.++.+..+++++.....+++-=..++
T Consensus 81 rs--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s 158 (345)
T PF07260_consen 81 RS--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS 158 (345)
T ss_pred hh--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence 22 333333333222222211 11 11122233 455778899999999999999999999999999999988866777
Q ss_pred hhhHHHHHHHHHHhhhHHH
Q 018609 274 HIGAYVNLGAYYIVGIPLA 292 (353)
Q Consensus 274 ~~~~~~~~~~~~~~~i~~~ 292 (353)
......++.. ....+...
T Consensus 159 ~iV~~aSI~~-v~~qvV~v 176 (345)
T PF07260_consen 159 WIVGSASIAD-VIAQVVLV 176 (345)
T ss_pred eEeehHHHHH-HHHHHHHH
Confidence 7766666655 44444333
No 36
>PRK10459 colanic acid exporter; Provisional
Probab=98.31 E-value=9.9e-05 Score=70.60 Aligned_cols=182 Identities=16% Similarity=0.182 Sum_probs=123.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHH
Q 018609 124 EFFSFALPTVVMFCLEWWSFEILILLSGL-LPNSKLETSVLSICLTISSTHYFIP-YGIGAAASTRVSNELGAGNPQAAQ 201 (353)
Q Consensus 124 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~a~~~i~~~i~~~~~~~~-~~~~~a~~~~vs~~~g~~~~~~~~ 201 (353)
+..|-+....+++........+...++++ +|+ ++.+.++.+..+..+...+. .|++++.. +. +| +.+
T Consensus 6 ~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p--~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~--~~~ 74 (492)
T PRK10459 6 KTISGAKWTAISTVIIIGLQLVQLTVLARILDN--HQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QD--ISH 74 (492)
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHHHHHhCCH--HHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---cc--CCH
Confidence 34555555666666666555555555554 464 47888888888888777655 47766542 21 11 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHH
Q 018609 202 LAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNL 281 (353)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 281 (353)
+............+++..++.+++.+++..++. +|+ ....+++.++..++.++.....+.+|+.++.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 334455566677777777888888888887764 444 345678888888888888889999999999998888887
Q ss_pred HHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHH
Q 018609 282 GAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAI 323 (353)
Q Consensus 282 ~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 323 (353)
.. .+........+. ..+.|..+..++..++..+..+....
T Consensus 150 ~~-~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~~ 189 (492)
T PRK10459 150 SA-VVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFGY 189 (492)
T ss_pred HH-HHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 76 444444444443 34678888999999888877665433
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=0.00045 Score=62.62 Aligned_cols=199 Identities=14% Similarity=0.046 Sum_probs=133.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcc---CCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHH
Q 018609 124 EFFSFALPTVVMFCLEWWSFEILILLSGL---LPNSKLETSVLSICLTISSTHY-FIPYGIGAAASTRVSNELGAGNPQA 199 (353)
Q Consensus 124 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~~g~~~~~~ 199 (353)
+..|.......+.+..++-..-+..++.. ++-+ +.+.|.++++.-++.. ++...+--..-...+|...+++.|+
T Consensus 240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~--~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFG--DQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcc--hhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 44555555566666666656655555552 2223 5678999999877664 5667888888889999888888887
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhh
Q 018609 200 AQLAACVV---MVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIG 276 (353)
Q Consensus 200 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 276 (353)
.++..... ++....+++.+.++....++.+..+++++.-....+...++++++..++.+++.+..+.+++.++.+-.
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 77765544 444444555555555555566777775543222336688999999999999999999999998755443
Q ss_pred HHHH---HHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHHh
Q 018609 277 AYVN---LGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 327 (353)
Q Consensus 277 ~~~~---~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 327 (353)
...+ .+. .++.+..+|+++-. +|..|..+|.++.+.++.+.....+++
T Consensus 398 ~~~n~~mlaf-SviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 398 DKHNKFMLAF-SVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HhcccchhHH-HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 111 33456688888877 577888888888887777666555543
No 38
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.14 E-value=0.0011 Score=56.98 Aligned_cols=162 Identities=18% Similarity=0.280 Sum_probs=104.7
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018609 144 EILILLSGLLPNSKLETSVLSICLTISSTHYFI-PYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTIL 222 (353)
Q Consensus 144 ~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~-~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (353)
....++...+|+ ++.+.|+....+..+...+ ..|+...... ..++|+++.++..+......++.+++...+.
T Consensus 6 ~~~~~lar~l~~--~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PF13440_consen 6 LFLILLARYLGP--EDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILA 78 (251)
T ss_pred HHHHHHHHHCCH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555564 4788888888888877765 3455444433 2346666777777766665555554444433
Q ss_pred HHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCC
Q 018609 223 FCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLR 302 (353)
Q Consensus 223 ~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g 302 (353)
.. +...+ ++++ ...++.+..+..++........+.+++.+|.+.....+..... ..+.....+.. .+.+
T Consensus 79 ~~----~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 79 IL----IAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSL-LRLLLLVLLLY-LGLN 147 (251)
T ss_pred HH----HHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHHH-HHhh
Confidence 32 22244 3333 3455667777888889999999999999999999999988743 33333333332 2237
Q ss_pred chHhhHHHHHHHHHHHHHHHH
Q 018609 303 GKGLWIGIMTGSAVQAIVLAI 323 (353)
Q Consensus 303 ~~g~~~~~~~~~~~~~~~~~~ 323 (353)
..+..++..++..+..+....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ 168 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFY 168 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888988888887766554
No 39
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=98.12 E-value=8.2e-07 Score=71.37 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=66.1
Q ss_pred chhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH-HHHHHHHHH
Q 018609 2 EQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATL-CFHILLCWY 70 (353)
Q Consensus 2 ~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~-~~ni~~~~l 70 (353)
+++++.++++.|+|+.+.+.+|+++..++.|+..+..+.++++|+.|+++.+++.++... ++|+.++++
T Consensus 93 ~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 93 FSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 468889999999999999999999999999999999999999999999999999999999 999999975
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.11 E-value=3e-05 Score=61.06 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHH
Q 018609 247 VPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITV 326 (353)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 326 (353)
+++.+++.+++++.....+.+++.||++..+..+..+ .++++++++.+.+. +|..|+++++.+++.....+.....+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999998 88999999999544 89999999999999999988887777
Q ss_pred hc
Q 018609 327 TT 328 (353)
Q Consensus 327 ~~ 328 (353)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 64
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.77 E-value=0.0044 Score=53.94 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=126.0
Q ss_pred hhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhh---cCCCcchhH
Q 018609 7 NRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFK---ANFRIVGAA 83 (353)
Q Consensus 7 ~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~---~~~gi~g~a 83 (353)
-++.|.+|++.+.+++-+.++.+--++..+-...+|++-=++++......++...+..+++..+++.. +..+..-..
T Consensus 115 ~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipi 194 (345)
T PF07260_consen 115 NDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPI 194 (345)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHH
Confidence 45568899999999999999988888888888888888766777777777776666666666566643 222222223
Q ss_pred HHHHHHHHHHHHHH--HHHHhccccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCCh---h
Q 018609 84 LAIGLSYCLNAVIL--ALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGL-LPNS---K 157 (353)
Q Consensus 84 ~at~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~---~ 157 (353)
+|+..+..+.+-+. -++... ++..+...+..+.+...+++++++.+|.+.....+..+-.+.+.++++ ++.+ +
T Consensus 195 l~~y~g~~vr~t~v~LGy~~~i-~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~ 273 (345)
T PF07260_consen 195 LALYAGIAVRFTIVCLGYYQSI-HDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAAT 273 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccch
Confidence 44444443333222 222221 122223333334455678999999999999999999999999999998 5533 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 018609 158 LETSVLSICLTISSTHYFIPYGIGAAASTRVSNEL-GAGNPQAAQ--------LAACVVMVLAVTEAVIVGTILF 223 (353)
Q Consensus 158 ~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~-g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 223 (353)
++++...+..+.-.+.+ |..+-.-.. ..++ ..++.++.+ ...++.....+.+++.++..++
T Consensus 274 ~avavl~~~ypvgh~~y----~w~~~~r~~-~paf~~~~~~~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 274 EAVAVLTATYPVGHMPY----GWLTELRAV-YPAFDKNNPQNKLRNCGNPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred hhhhhhccccCCCcCcc----hhHHhHHhh-CchhhccCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555444444433332 222222211 1122 122233333 2566666666666666555443
No 42
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=97.73 E-value=0.003 Score=60.20 Aligned_cols=185 Identities=21% Similarity=0.201 Sum_probs=122.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH-HHhccCCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHH
Q 018609 123 KEFFSFALPTVVMFCLEWWSFEILI-LLSGLLPNSKLETSVLSICLTISSTHYFIP-YGIGAAASTRVSNELGAGNPQAA 200 (353)
Q Consensus 123 k~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~-~~~~~a~~~~vs~~~g~~~~~~~ 200 (353)
+++.|-+.-....+........+.. .+.-.+|++ +.+.++.+..+..++..+. .|+..+..-.+++..++++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~--~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPE--GFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcc--cceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 4455555555555555554444444 444455643 7888999999999888876 79999999999999887777777
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHH
Q 018609 201 QLA-ACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYV 279 (353)
Q Consensus 201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 279 (353)
+.. ...........+.+.........+. +++ ....++...+..+.........+.+|+.++.+.....
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV----LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 776 6666666666666655555544443 333 6677888999999999999999999999999999888
Q ss_pred HHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHH
Q 018609 280 NLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIIT 325 (353)
Q Consensus 280 ~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~ 325 (353)
. +.. ...+...+.+.. .......++...+............
T Consensus 153 ~-~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (480)
T COG2244 153 I-VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILL 193 (480)
T ss_pred H-HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 432 112222222222 2344555666666655554444444
No 43
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=94.41 E-value=0.66 Score=44.89 Aligned_cols=101 Identities=13% Similarity=-0.024 Sum_probs=77.8
Q ss_pred hhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhH---HHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 018609 3 QSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILP---LFLSACATLCFHILLCWYLVFKANFRI 79 (353)
Q Consensus 3 ~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~---~~~~~~~~~~~ni~~~~lli~~~~~gi 79 (353)
++.++++++.+.=..+.+.+-++.....+|+.+++.+..+++++....+- .........++.+..+++|+.. ++|.
T Consensus 367 s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~ 445 (549)
T PF04506_consen 367 SPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGA 445 (549)
T ss_pred HHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCC
Confidence 45667776543333333455677888899999999999999998877644 4445556666777788998887 8999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcc
Q 018609 80 VGAALAIGLSYCLNAVILALYMRYS 104 (353)
Q Consensus 80 ~g~a~at~i~~~~~~~~~~~~~~~~ 104 (353)
.|..+|+++.....++...+++++.
T Consensus 446 ~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 446 VGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888654
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.14 E-value=2.1 Score=39.69 Aligned_cols=100 Identities=12% Similarity=-0.048 Sum_probs=75.7
Q ss_pred hhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhH---HHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 018609 3 QSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILP---LFLSACATLCFHILLCWYLVFKANFRI 79 (353)
Q Consensus 3 ~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~---~~~~~~~~~~~ni~~~~lli~~~~~gi 79 (353)
++..+.+.|.+.=....+..-+++....+|+.+++.+..+++.+.+..+- .-+...+..+...+.+++++-. +|.
T Consensus 347 S~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~ 424 (530)
T KOG2864|consen 347 SYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGL 424 (530)
T ss_pred cHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hch
Confidence 34556666654433344446688999999999999999999988765432 3355666777888889999988 556
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcc
Q 018609 80 VGAALAIGLSYCLNAVILALYMRYS 104 (353)
Q Consensus 80 ~g~a~at~i~~~~~~~~~~~~~~~~ 104 (353)
.|-.+|.++...+..+....++++.
T Consensus 425 ~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 425 VGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888887654
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=86.96 E-value=24 Score=32.20 Aligned_cols=268 Identities=11% Similarity=-0.003 Sum_probs=143.9
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHhcccc-ccccccCCChh
Q 018609 39 PLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSS-CEKTRVFIFSD 117 (353)
Q Consensus 39 ~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~~~~gi~g~a~at~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 117 (353)
....++.+.++.+.....-.++.++...+..++-. +++.|..++..++..+-......+..+.-+ .++.-.++...
T Consensus 149 i~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~i~FdFL~~ 225 (467)
T COG4267 149 ILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRRIGFDFLLY 225 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccceehhhh
Confidence 45567788888888888888888888888776655 478899999999999888888777765411 11111111111
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHH------HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 018609 118 IFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSV------LSICLTISSTHYFIPYG-IGAAASTRVSN 190 (353)
Q Consensus 118 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~------~~i~~~i~~~~~~~~~~-~~~a~~~~vs~ 190 (353)
. +-=....+..+.-+++..+|+++.-..+++++..+. |-+..-...+...|... +.....+--.+
T Consensus 226 ----~----~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~ 297 (467)
T COG4267 226 ----R----RKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISLETDFQE 297 (467)
T ss_pred ----h----hcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeeeeehHHH
Confidence 1 111223445556677888888777666644222111 22221122222222211 11111111111
Q ss_pred h--------hcC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHH
Q 018609 191 E--------LGA-------GNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSII 255 (353)
Q Consensus 191 ~--------~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~ 255 (353)
. .|. ++.++.....++.+.-.+-+-...++.++++++.+...++-++- .....++-.++.-
T Consensus 298 ~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~vd~lg~s 373 (467)
T COG4267 298 NYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFYVDVLGVS 373 (467)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHHHHHHHHH
Confidence 1 111 23345555666777777777788899999999999999876654 3333333333333
Q ss_pred HhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHH
Q 018609 256 MDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIIT 325 (353)
Q Consensus 256 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~ 325 (353)
.+...+.+-.+.--..+-+..+.....- .+.|..+.+++.. +|......+..++..+..+......
T Consensus 374 ~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~---lgp~~~g~gff~a~fl~vlv~~~~l 439 (467)
T COG4267 374 CQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLE---LGPGYYGVGFFLASFLYVLVAFKSL 439 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHH---hCccceehHHHHHHHHHHHHHHhhh
Confidence 3333333333333334444444444332 4445555555443 4444444555555555554444333
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=83.53 E-value=36 Score=31.16 Aligned_cols=136 Identities=17% Similarity=0.108 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHH
Q 018609 175 FIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSI 254 (353)
Q Consensus 175 ~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~ 254 (353)
.+..|++....-.+|..+=+||+++......-...+....+.+++.+.++ -+||. ...+-.......
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~---------~~~~~----si~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF---------VNNQY----SIVYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh---------hcCch----hHHHHHHHHHHH
Confidence 34567888888889999988999998888877777766666666642221 11211 222333344455
Q ss_pred HHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHHHHHHHh
Q 018609 255 IMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 327 (353)
Q Consensus 255 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 327 (353)
...+...+....+.+++|.+.....-.++ ..+.+.++.++-. .+..|..++..++......+...++.+
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56666677778888888888888777777 6666666666654 488999999999998777666555544
No 47
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=80.35 E-value=39 Score=29.41 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=49.7
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHH
Q 018609 164 SICLTISSTH---YFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMV-LAVTEAVIVGTILFCCRYVLAYAFNSDKDV 239 (353)
Q Consensus 164 ~i~~~i~~~~---~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 239 (353)
+++.++-.+. ..+...+........=++..++|+++.++....... ..+...++..+.+++.++.+-.+...-|+
T Consensus 97 alAvPva~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~~G~~~v~~il~~iP~- 175 (265)
T TIGR00822 97 ALALPLAAAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVALVSQSAVQAMLKAIPE- 175 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHH-
Confidence 4555554333 334445566666777777888999988765444333 23333333322233333333333332232
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHH
Q 018609 240 VNYVSELVPLLSFSIIMDSLQSVLSGV 266 (353)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (353)
...+-+....--+|..++...+..+
T Consensus 176 --~v~~Gl~vaggmLPAvGfAmLl~~m 200 (265)
T TIGR00822 176 --VVTHGLQIAGGIIVVVGYAMVLRMM 200 (265)
T ss_pred --HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444444445555555554433
No 48
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=63.33 E-value=7.1 Score=29.39 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=5.0
Q ss_pred HhhHHHHHHHHH
Q 018609 305 GLWIGIMTGSAV 316 (353)
Q Consensus 305 g~~~~~~~~~~~ 316 (353)
|+.+|..++-+.
T Consensus 68 ~Ii~gv~aGvIg 79 (122)
T PF01102_consen 68 GIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhHHHHHHHHH
Confidence 344444444433
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=63.03 E-value=48 Score=22.97 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 018609 180 IGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVI 217 (353)
Q Consensus 180 ~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (353)
++...+.-+-..+.+||+|++++..+.+..++.+-.++
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 44445566778888999999999998888877554333
No 50
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=53.34 E-value=1.9e+02 Score=26.78 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018609 196 NPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAY 231 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 231 (353)
+.++.+++.+.+..++++......++..+..-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999988888877765
No 51
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=50.79 E-value=1.8e+02 Score=27.35 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 018609 128 FALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVV 207 (353)
Q Consensus 128 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~ 207 (353)
.+-|.+++.+.--+.-..-..+....-+++.+ ..-+.-....|+|.++..++|+.+|+.++.+.+|..--+
T Consensus 378 DsGpLIiSh~yLLiGcslPIWms~~p~~~~ra---------l~~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT 448 (510)
T KOG2468|consen 378 DSGPLIISHFYLLIGCSLPIWMSNSPCGGDRA---------LALLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGT 448 (510)
T ss_pred cCCceeHHHHHHHHhcccchhccCCCCCchhh---------hhhhhhheeeccchHHHHHHhhhhcceecCCCcceeehh
Confidence 35677776666444444444444443322112 223445567899999999999999999999998887766
Q ss_pred HHHHHHHH
Q 018609 208 MVLAVTEA 215 (353)
Q Consensus 208 ~~~~~~~~ 215 (353)
+.......
T Consensus 449 ~Afivs~~ 456 (510)
T KOG2468|consen 449 LAFIVSSF 456 (510)
T ss_pred hHHHHHHH
Confidence 65444433
No 52
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=38.34 E-value=28 Score=24.22 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCchHhhHHHHHHHHHHHHHHHHHHHhcCHHH
Q 018609 301 LRGKGLWIGIMTGSAVQAIVLAIITVTTNWRK 332 (353)
Q Consensus 301 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (353)
+...|.||...++.++..++++..+.+++.+.
T Consensus 30 ~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrs 61 (94)
T PF05393_consen 30 WPNLGMWFLVICGIFILLVILWFVCCKKRKRS 61 (94)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34456788888888888888877776554333
No 53
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=37.00 E-value=3.2e+02 Score=24.78 Aligned_cols=23 Identities=17% Similarity=0.051 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHH
Q 018609 276 GAYVNLGAYYIVGIPLASVLCFV 298 (353)
Q Consensus 276 ~~~~~~~~~~~~~i~~~~~l~~~ 298 (353)
...-.+....++..|+..+....
T Consensus 194 ~~~~~l~~~~li~~Pl~li~la~ 216 (340)
T PF12794_consen 194 HRLRYLWWPLLILAPLALIVLAL 216 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455556665554433
No 54
>PRK15111 antimicrobial peptide ABC transporter permease SapC; Provisional
Probab=36.51 E-value=3e+02 Score=24.31 Aligned_cols=77 Identities=12% Similarity=-0.027 Sum_probs=34.8
Q ss_pred hHhCCCH---H----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCh----hHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018609 8 RLERQDP---E----IATEACNFSISLIPALLAFAVLRPLIHNLQSQSLI----LPLFLSACATLCFHILLCWYLVFKAN 76 (353)
Q Consensus 8 ~~l~~~~---~----~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~----~~~~~~~~~~~~~ni~~~~lli~~~~ 76 (353)
+++|+|+ + +...++.=+.....+.....+....-+..-|..+. .......+...+=.+++.++++..++
T Consensus 76 ~~lGTD~~GrDv~srll~g~~~tL~ial~~~~la~viG~~lGi~ag~~~~~~d~~l~~~~d~l~siP~l~l~ill~~~~G 155 (296)
T PRK15111 76 FFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAG 155 (296)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 4678763 3 33333333334444444444444455555443222 22234444444444555555555554
Q ss_pred CCcchhHH
Q 018609 77 FRIVGAAL 84 (353)
Q Consensus 77 ~gi~g~a~ 84 (353)
.+.....+
T Consensus 156 ~~~~~~il 163 (296)
T PRK15111 156 PSLSHAMF 163 (296)
T ss_pred ccHHHHHH
Confidence 44433333
No 55
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=34.79 E-value=3.1e+02 Score=23.95 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhccCch
Q 018609 162 VLSICLTISSTHY---FIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVT-EAVIVGTILFCCRYVLAYAFNSDK 237 (353)
Q Consensus 162 ~~~i~~~i~~~~~---~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~f~~~~ 237 (353)
+.+++-++-.+.. .+...+........-++..++|+++.++........... ...+..+.+++.++.+-.+...-|
T Consensus 96 AialAvPvgllg~~l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~~~~~~~~~~~~~~fl~~~fG~~~v~~~~~~iP 175 (267)
T PRK09757 96 AIGLGLPFSLLMQYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCTYLAQGAMQALVKAMP 175 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 3455555544333 334455666667777778889999887765544333332 333332233334444444433223
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Q 018609 238 DVVNYVSELVPLLSFSIIMDSLQSVLSGV 266 (353)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 266 (353)
+ ...+-+....--+|..++...+..+
T Consensus 176 ~---~v~~GL~vaggmLPAvGfAmLl~~m 201 (267)
T PRK09757 176 A---WLTHGFEVAGGILPAVGFGLLLRVM 201 (267)
T ss_pred H---HHHHHHHHHhchHHHHHHHHHHHHH
Confidence 2 3444444444455555555555544
No 56
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=34.25 E-value=78 Score=21.89 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=8.4
Q ss_pred HHHHhcCHHHHHHHHHHhhhcCCCCCCC
Q 018609 323 IITVTTNWRKQARMARERIFEGTYSAGN 350 (353)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (353)
..++|.+.+++.++..+|..+-.+..++
T Consensus 28 ieYrk~~rqrkId~li~RIreraEDSGn 55 (81)
T PF00558_consen 28 IEYRKIKRQRKIDRLIERIRERAEDSGN 55 (81)
T ss_dssp -----------CHHHHHHHHCTTTCCHC
T ss_pred HHHHHHHHHHhHHHHHHHHHcccccCCC
Confidence 3344445555555555555544444333
No 57
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=33.39 E-value=2.4e+02 Score=25.07 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCH
Q 018609 307 WIGIMTGSAVQAIVLAIITVTTNW 330 (353)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~ 330 (353)
++......++.+++.+++++|++|
T Consensus 294 y~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 294 YPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333333444455566777888777
No 58
>PRK09546 zntB zinc transporter; Reviewed
Probab=30.83 E-value=1.4e+02 Score=26.87 Aligned_cols=43 Identities=12% Similarity=-0.072 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHhCCCc---h-----HhhHHHHHHHHHHHHHHHHHHHhcCH
Q 018609 287 VGIPLASVLCFVLNLRG---K-----GLWIGIMTGSAVQAIVLAIITVTTNW 330 (353)
Q Consensus 287 ~~i~~~~~l~~~~~~g~---~-----g~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (353)
+.+|+.++.+.+ +++. + ..|+...+..++.++..+++++|++|
T Consensus 273 IflPlT~IaGiy-GMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 273 VFLPTTFLTGLF-GVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHhhh-ccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345777776553 2221 1 22333333444455556667777777
No 59
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=30.73 E-value=4e+02 Score=23.91 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHH-hC------CCchHhhHHHHHHHHHHHHHHHHHHHhcCH
Q 018609 287 VGIPLASVLCFV-LN------LRGKGLWIGIMTGSAVQAIVLAIITVTTNW 330 (353)
Q Consensus 287 ~~i~~~~~l~~~-~~------~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (353)
+.+|..++.+.+ .+ .+-...++..+...++.+++.+++++|++|
T Consensus 271 iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 271 IFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 446666666543 11 111222333444445566677777888877
No 60
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=29.72 E-value=3.8e+02 Score=23.36 Aligned_cols=92 Identities=8% Similarity=0.019 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhccCchHHHHHHHHHhHHH
Q 018609 172 THYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGT-ILFCCRYVLAYAFNSDKDVVNYVSELVPLL 250 (353)
Q Consensus 172 ~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~ 250 (353)
++..+...+.....-..=++-.++|.+...+....+.........+... ..++.++.+-.+...-|+. ..+-+.+.
T Consensus 108 ~l~~~~rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~~~~~ipaf~~~~~g~~~V~~~l~aiP~~---l~~GL~va 184 (265)
T COG3715 108 FLTTFVRTITVGFVHRADKAAEEGNTRGIERLHIGALLLQALRIAIPAFLVAYFGSSAVQSLLDAIPEW---LTNGLAVA 184 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhchHH---HhhhhhHh
Confidence 3334445666666677777888899999888888877544444444333 3343344444444333332 33334444
Q ss_pred HHHHHHhhHHHHHHHH
Q 018609 251 SFSIIMDSLQSVLSGV 266 (353)
Q Consensus 251 ~~~~~~~~~~~~~~~~ 266 (353)
.--.|..++..+++..
T Consensus 185 GgmlpavGfAmll~~M 200 (265)
T COG3715 185 GGMLPAVGFAMLLNMM 200 (265)
T ss_pred cchhHHHHHHHHHHHH
Confidence 4444444555544443
No 61
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=29.25 E-value=2.9e+02 Score=21.94 Aligned_cols=57 Identities=9% Similarity=0.030 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCc
Q 018609 180 IGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSD 236 (353)
Q Consensus 180 ~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 236 (353)
+.....-.+.+.+|+++.++.-......+.....+.-|++.++-...+.+...++.+
T Consensus 98 l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~ 154 (183)
T PF01595_consen 98 LILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIE 154 (183)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333455567888899999999999999999999999999999998999888888654
No 62
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.67 E-value=65 Score=24.30 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccc
Q 018609 79 IVGAALAIGLSYCLNAVILALYMRYSS 105 (353)
Q Consensus 79 i~g~a~at~i~~~~~~~~~~~~~~~~~ 105 (353)
+.|..++.+.+-+..++++.|+++|++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666665565666665443
No 63
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=28.45 E-value=93 Score=26.15 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 018609 174 YFIPYGIGAAASTRVSNELGAG 195 (353)
Q Consensus 174 ~~~~~~~~~a~~~~vs~~~g~~ 195 (353)
.....++|.+..+++++.+|++
T Consensus 119 ~I~~l~~GD~lAsiiG~~~G~~ 140 (216)
T COG0170 119 GILVLALGDGLASIIGKRYGRH 140 (216)
T ss_pred HHHHHHHhhHHHHHhCcccCcc
Confidence 4456799999999999999985
No 64
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.87 E-value=97 Score=20.19 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 018609 312 TGSAVQAIVL 321 (353)
Q Consensus 312 ~~~~~~~~~~ 321 (353)
+|.++..++.
T Consensus 30 ~G~llg~l~~ 39 (68)
T PF06305_consen 30 LGALLGWLLS 39 (68)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 65
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=27.19 E-value=5.3e+02 Score=24.22 Aligned_cols=78 Identities=10% Similarity=0.097 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 018609 132 TVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLA 211 (353)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 211 (353)
..+.+....+.+.....+++++-+...|-+.|++...+.++...+. ......+.+.+|-.+.+ ....+..+.++
T Consensus 325 ~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s----~~lg~~l~~~~~vt~~~--f~~l~~lili~ 398 (433)
T PF03092_consen 325 TILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVS----STLGAFLMELFGVTRDD--FSNLWLLILIC 398 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCccc--ccchHHHHHHH
Confidence 3456666667777777777777554456788888888777766555 44455556666643333 33344444443
Q ss_pred HHHH
Q 018609 212 VTEA 215 (353)
Q Consensus 212 ~~~~ 215 (353)
.+..
T Consensus 399 ~~~~ 402 (433)
T PF03092_consen 399 SVIQ 402 (433)
T ss_pred HHHH
Confidence 3333
No 66
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=25.13 E-value=4.6e+02 Score=22.78 Aligned_cols=86 Identities=6% Similarity=-0.021 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcch
Q 018609 195 GNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQH 274 (353)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 274 (353)
+..+..++..-.+..++...++.=++.-+.+++ ..++.++.+....+....+.. -..++..++......-....+.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW~~-~s~~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFWFI-SSLVFALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehHHH-HHHHHHHHHHHHHHHHhcccccc
Confidence 344556666666666666666655555565665 445555544444333333333 33333333333332345555555
Q ss_pred hhHHHHHHH
Q 018609 275 IGAYVNLGA 283 (353)
Q Consensus 275 ~~~~~~~~~ 283 (353)
.|..-++-.
T Consensus 186 LPar~SFY~ 194 (261)
T PF10160_consen 186 LPARPSFYR 194 (261)
T ss_pred CCCCccHHH
Confidence 555444433
No 67
>PF14184 YrvL: Regulatory protein YrvL
Probab=24.57 E-value=3.3e+02 Score=20.90 Aligned_cols=112 Identities=6% Similarity=0.080 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCc-hHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHH
Q 018609 206 VVMVLAVTEAVIVGTILFCCRYVLAYAFNSD-KDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAY 284 (353)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 284 (353)
....+......+.+. .++..--+.++++-+ +...+...-.+....++.++..+...+...+.-.+.++..... -.
T Consensus 6 ~~i~~~l~~~~v~a~-~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~~---l~ 81 (132)
T PF14184_consen 6 IFIIIALLLIIVFAI-YFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFIL---LA 81 (132)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHH---HH
Confidence 334444444444444 333334455566533 2334445555666677888888887777666665333332222 22
Q ss_pred HHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHHHHHH
Q 018609 285 YIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVL 321 (353)
Q Consensus 285 ~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~ 321 (353)
..+.....+...+..|.=.+++++.....-++..+..
T Consensus 82 ~~id~~~t~~~i~~aD~~m~sI~is~~~e~i~al~~~ 118 (132)
T PF14184_consen 82 FIIDFLFTWITIYTADELMESISISTLSEIIFALLFA 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeCcHHHHHHHHHHH
Confidence 3455566666666655556677776665555544443
No 68
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=23.63 E-value=5.9e+02 Score=23.56 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHH
Q 018609 237 KDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCF 297 (353)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 297 (353)
.++.+....|+...++.... ++.=+..+.+-.+|.-..+.+..++ ..++.++.+.+..
T Consensus 50 s~~y~~v~~~~vPlai~LlL--l~~Dlr~i~~~g~~~l~~F~~~~~g-~viG~~va~~l~~ 107 (378)
T PF05684_consen 50 SPVYDFVWTYLVPLAIPLLL--LSADLRRILRLGGRLLLAFLIGAVG-TVIGAVVAFLLFG 107 (378)
T ss_pred chHHHHHHHHHHHHHHHHHH--HHccHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 34555566665555544433 4445567777777777777777776 4445555555443
No 69
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=23.09 E-value=5.1e+02 Score=22.66 Aligned_cols=83 Identities=13% Similarity=0.062 Sum_probs=38.6
Q ss_pred hhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCch
Q 018609 225 CRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGK 304 (353)
Q Consensus 225 ~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~ 304 (353)
.-..+++.+..|+ ...+...+.+++..++...... +..-+.+ ..+.++++..+..+.-...+.. .+..
T Consensus 152 ~Y~~~~~~~~~~~------~~~~lPqaiGm~i~a~i~~~~~--~~~~~~k-~~~~nil~G~~w~ignl~~~is---~~~~ 219 (269)
T PF06800_consen 152 IYSVIPKAFHVSG------WSAFLPQAIGMLIGAFIFNLFS--KKPFFEK-KSWKNILTGLIWGIGNLFYLIS---AQKN 219 (269)
T ss_pred HHHHHHHhcCCCh------hHhHHHHHHHHHHHHHHHhhcc--ccccccc-chHHhhHHHHHHHHHHHHHHHh---HHhc
Confidence 3334455565553 2333344555544444333322 1111112 2344444434444432222222 3467
Q ss_pred HhhHHHHHHHHHHHH
Q 018609 305 GLWIGIMTGSAVQAI 319 (353)
Q Consensus 305 g~~~~~~~~~~~~~~ 319 (353)
|++.++.+++.-..+
T Consensus 220 G~a~af~lSQ~~vvI 234 (269)
T PF06800_consen 220 GVATAFTLSQLGVVI 234 (269)
T ss_pred cchhhhhHHhHHHHH
Confidence 889999999865444
No 70
>PRK10739 putative antibiotic transporter; Provisional
Probab=22.96 E-value=4.4e+02 Score=21.80 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=32.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHH
Q 018609 192 LGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSEL 246 (353)
Q Consensus 192 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~ 246 (353)
-...+.++-|+..++....++ ++.+++.++++.+.++|+-+.+..+.+...
T Consensus 28 t~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGGi 78 (197)
T PRK10739 28 LKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGGI 78 (197)
T ss_pred hCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444556666667666655444 444466778899999998876655554443
No 71
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=22.55 E-value=5.4e+02 Score=22.70 Aligned_cols=13 Identities=15% Similarity=0.026 Sum_probs=6.6
Q ss_pred HHHHHHHHhhcCC
Q 018609 183 AASTRVSNELGAG 195 (353)
Q Consensus 183 a~~~~vs~~~g~~ 195 (353)
-.....++.+|+|
T Consensus 48 ~~~g~l~dr~g~r 60 (379)
T TIGR00881 48 FVMGSVSDRSNPR 60 (379)
T ss_pred hhhhHHHHhhCCe
Confidence 3334455666644
No 72
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=21.85 E-value=3.6e+02 Score=20.38 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 018609 208 MVLAVTEAVIVGTILFCCR 226 (353)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~ 226 (353)
...+..++..+.++...+.
T Consensus 11 ~~iGi~ig~~i~li~~~~~ 29 (136)
T PF11457_consen 11 FLIGIGIGSFISLIISLFY 29 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 73
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.69 E-value=5e+02 Score=21.99 Aligned_cols=61 Identities=5% Similarity=-0.046 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch---------HHHHHHHHHhHHHHHHHHH
Q 018609 195 GNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDK---------DVVNYVSELVPLLSFSIIM 256 (353)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~---------~~~~~~~~~l~~~~~~~~~ 256 (353)
.+++...+.+..++.-.+.+-.++++++.+.++ +..+|+.|. +..+-.+.++++++.++|-
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d-~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY 210 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSD-FMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPY 210 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc-chhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHH
Confidence 466777777777777666666666666655444 444554321 1223355555555555443
No 74
>PRK01637 hypothetical protein; Reviewed
Probab=21.38 E-value=5.6e+02 Score=22.45 Aligned_cols=15 Identities=0% Similarity=0.014 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhcCCC
Q 018609 182 AAASTRVSNELGAGN 196 (353)
Q Consensus 182 ~a~~~~vs~~~g~~~ 196 (353)
.+......+.++.++
T Consensus 110 ~~l~~a~N~i~~~~~ 124 (286)
T PRK01637 110 SSIDKALNTIWRSKR 124 (286)
T ss_pred HHHHHHHHHHhCCCC
Confidence 334444455566544
Done!