Query 018609
Match_columns 353
No_of_seqs 151 out of 1838
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 03:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.1E-40 3.9E-45 313.3 24.0 326 2-329 111-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 2.6E-20 9.1E-25 174.5 17.8 208 117-328 6-217 (460)
3 4aps_A DI-OR tripeptide H+ sym 53.2 1.3E+02 0.0043 27.0 18.5 10 187-196 341-350 (491)
4 2knc_B Integrin beta-3; transm 48.5 50 0.0017 21.8 5.6 20 302-321 9-28 (79)
5 4ev6_A Magnesium transport pro 34.9 64 0.0022 27.9 5.8 43 286-330 287-338 (339)
6 2k1k_A Ephrin type-A receptor 32.7 48 0.0016 18.4 3.0 17 79-95 13-29 (38)
7 2ks1_B Epidermal growth factor 24.4 1.1E+02 0.0037 17.6 4.4 6 98-103 32-37 (44)
8 2jwa_A Receptor tyrosine-prote 22.3 97 0.0033 17.8 3.0 6 98-103 32-37 (44)
9 2iub_A CORA, divalent cation t 13.8 1.1E+02 0.0037 26.7 2.9 20 311-330 343-362 (363)
10 4b19_A PEPA1; toxin, toxin apo 12.8 96 0.0033 16.1 1.3 23 84-106 8-30 (30)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.1e-40 Score=313.31 Aligned_cols=326 Identities=22% Similarity=0.342 Sum_probs=300.5
Q ss_pred chhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhh----cCC
Q 018609 2 EQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFK----ANF 77 (353)
Q Consensus 2 ~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~----~~~ 77 (353)
++++++.+++.|+++.+.+.+|+++..++.|+..+....++.+|++|+++.+++.+++++++|+++++++++. |++
T Consensus 111 ~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~ 190 (460)
T 3mkt_A 111 QTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPEL 190 (460)
T ss_dssp HHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCC
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 4678888999999999999999999999999999999999999999999999999999999999999999986 489
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhccccccc-c-ccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC
Q 018609 78 RIVGAALAIGLSYCLNAVILALYMRYSSSCEK-T-RVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPN 155 (353)
Q Consensus 78 gi~g~a~at~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 155 (353)
|+.|+++|+.+++.+..++..++.+++++.++ + ++++.+.+++..|+++++++|..++++.+.+....++.+++++|+
T Consensus 191 g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 270 (460)
T 3mkt_A 191 GGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGS 270 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 99999999999999999998888877654322 1 123334567889999999999999999999999999999999985
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 018609 156 SKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNS 235 (353)
Q Consensus 156 ~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 235 (353)
+ ++++|+++.++.++...+..+++++..|.+++++|+||+|++++..+.+..+++.++++.+++++++++++..+|++
T Consensus 271 ~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 348 (460)
T 3mkt_A 271 T--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE 348 (460)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHH----hC-CCchHhhHHH
Q 018609 236 DKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFV----LN-LRGKGLWIGI 310 (353)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~~~~ 310 (353)
|+++.+.+..++++++++.++.+++.+..+++++.||++.++..++++.+++++|+++++... ++ +|..|+|+++
T Consensus 349 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~ 428 (460)
T 3mkt_A 349 NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGF 428 (460)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHH
Confidence 999999999999999999999999999999999999999999999999779999999999987 67 8999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 018609 311 MTGSAVQAIVLAIITVTTN 329 (353)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~ 329 (353)
.+++.+..++....++|..
T Consensus 429 ~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 429 IIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888776665543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.85 E-value=2.6e-20 Score=174.50 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=191.3
Q ss_pred hhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018609 117 DIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGN 196 (353)
Q Consensus 117 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~ 196 (353)
..++..|++++.++|..++++...+...+|..+++++|++ +.++++.+.++..+...+..+++.+..+.+++++|++|
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~--~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAI--DMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTT--TSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4567899999999999999999999999999999998854 88999999999888888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhh
Q 018609 197 PQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIG 276 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 276 (353)
+|++++..+.++.+..+.+++++++ +++.+++..+++.|++..+.+..+++++.++.++........+.+|+.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999998776 778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH----hCCCchHhhHHHHHHHHHHHHHHHHHHHhc
Q 018609 277 AYVNLGAYYIVGIPLASVLCFV----LNLRGKGLWIGIMTGSAVQAIVLAIITVTT 328 (353)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 328 (353)
+..++++ .++++++++++.+. +++|+.|+++++.+++.+..++....++++
T Consensus 163 ~~~~~~~-~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 163 MVIGFIG-LLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHH-HHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998 77889999998864 378999999999999999998877766654
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=53.16 E-value=1.3e+02 Score=26.97 Aligned_cols=10 Identities=0% Similarity=-0.120 Sum_probs=4.8
Q ss_pred HHHHhhcCCC
Q 018609 187 RVSNELGAGN 196 (353)
Q Consensus 187 ~vs~~~g~~~ 196 (353)
...+.+|+++
T Consensus 341 ~l~~r~~~r~ 350 (491)
T 4aps_A 341 WLWTAWKKNQ 350 (491)
T ss_dssp HHHHHTTTC-
T ss_pred HHHHHHhccC
Confidence 3455566553
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=48.52 E-value=50 Score=21.77 Aligned_cols=20 Identities=5% Similarity=0.003 Sum_probs=9.6
Q ss_pred CchHhhHHHHHHHHHHHHHH
Q 018609 302 RGKGLWIGIMTGSAVQAIVL 321 (353)
Q Consensus 302 g~~g~~~~~~~~~~~~~~~~ 321 (353)
++.++..+...+-++..++.
T Consensus 9 n~~~Iv~gvi~gilliGlll 28 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAA 28 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHH
Confidence 34455555555544444433
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=34.93 E-value=64 Score=27.89 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=24.4
Q ss_pred HhhhHHHHHHHHHhCCCc---------hHhhHHHHHHHHHHHHHHHHHHHhcCH
Q 018609 286 IVGIPLASVLCFVLNLRG---------KGLWIGIMTGSAVQAIVLAIITVTTNW 330 (353)
Q Consensus 286 ~~~i~~~~~l~~~~~~g~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (353)
.+.+|..++-+.+ +++. .|.|+ .....++.+++.+++++|++|
T Consensus 287 ~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~-~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 287 TIFAVPMWITGIY-GMNFSYLPLANNPQGFWL-VMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHH-HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhc-cCcCCCCCCccCchHHHH-HHHHHHHHHHHHHHHHHHcCC
Confidence 3456777776653 2322 23333 344445566667777888887
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=32.73 E-value=48 Score=18.37 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=7.5
Q ss_pred cchhHHHHHHHHHHHHH
Q 018609 79 IVGAALAIGLSYCLNAV 95 (353)
Q Consensus 79 i~g~a~at~i~~~~~~~ 95 (353)
+.|+.++.+.+-.+...
T Consensus 13 IAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHH
Confidence 34444454444443333
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.42 E-value=1.1e+02 Score=17.59 Aligned_cols=6 Identities=50% Similarity=0.933 Sum_probs=2.4
Q ss_pred HHHHhc
Q 018609 98 ALYMRY 103 (353)
Q Consensus 98 ~~~~~~ 103 (353)
++++++
T Consensus 32 ~~~~RR 37 (44)
T 2ks1_B 32 GLFMRR 37 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 344443
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.27 E-value=97 Score=17.81 Aligned_cols=6 Identities=0% Similarity=0.373 Sum_probs=2.3
Q ss_pred HHHHhc
Q 018609 98 ALYMRY 103 (353)
Q Consensus 98 ~~~~~~ 103 (353)
..|+++
T Consensus 32 ~~~~RR 37 (44)
T 2jwa_A 32 GILIKR 37 (44)
T ss_dssp HHHHHH
T ss_pred Hhheeh
Confidence 333433
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=13.79 E-value=1.1e+02 Score=26.73 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhcCH
Q 018609 311 MTGSAVQAIVLAIITVTTNW 330 (353)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~ 330 (353)
.+..++.++..+++++|++|
T Consensus 343 l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 343 LAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 33444555566677777777
No 10
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=12.77 E-value=96 Score=16.10 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc
Q 018609 84 LAIGLSYCLNAVILALYMRYSSS 106 (353)
Q Consensus 84 ~at~i~~~~~~~~~~~~~~~~~~ 106 (353)
++++++-++..++..|+-.++++
T Consensus 8 ia~visGcivalF~hWL~~r~~k 30 (30)
T 4b19_A 8 IAPVISGCAIAFFSYWLSRRNTK 30 (30)
T ss_dssp TTTTHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHhccCC
Done!