Query 018609
Match_columns 353
No_of_seqs 151 out of 1838
Neff 10.1
Searched_HMMs 13730
Date Mon Mar 25 03:18:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018609.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018609hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2csba3 a.60.2.4 (A:410-464) T 23.7 14 0.0011 19.6 1.1 21 3-23 15-35 (55)
2 d2onkc1 f.58.1.1 (C:1-252) Mol 12.0 2.6E+02 0.019 20.3 12.3 49 188-236 161-209 (252)
3 d1m56d_ f.23.8.1 (D:) Bacteria 11.8 1.1E+02 0.008 15.9 4.3 34 191-224 3-36 (42)
4 d2fyuk1 f.23.15.1 (K:1-53) Sub 7.2 94 0.0068 17.2 1.4 27 188-214 2-28 (53)
5 d1pv7a_ f.38.1.2 (A:) Lactose 6.8 4.6E+02 0.034 19.5 20.3 26 301-326 376-401 (417)
6 d2r6gg1 f.58.1.1 (G:7-296) Mal 6.6 4.7E+02 0.034 19.3 9.8 50 188-237 185-234 (290)
7 d2iuba2 f.17.3.1 (A:286-349) M 6.1 1.4E+02 0.01 16.9 1.9 6 289-294 17-22 (64)
8 d1nkzb_ f.3.1.1 (B:) Light-har 5.4 2.3E+02 0.017 14.4 4.6 34 196-229 7-40 (41)
9 d1lghb_ f.3.1.1 (B:) Light-har 4.2 3E+02 0.022 14.3 4.4 31 198-228 12-42 (43)
10 d1u61a_ a.149.1.1 (A:) Hypothe 4.0 5.1E+02 0.037 16.6 4.5 29 180-208 94-122 (127)
No 1
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=23.71 E-value=14 Score=19.61 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=16.7
Q ss_pred hhhhhhHhCCCHHHHHHHHHH
Q 018609 3 QSSINRLERQDPEIATEACNF 23 (353)
Q Consensus 3 ~~~i~~~l~~~~~~~~~a~~y 23 (353)
++.+++.+|.|+.+.+.++++
T Consensus 15 aerllrafgnpervkqlaref 35 (55)
T d2csba3 15 AERLLRAFGNPERVKQLAREF 35 (55)
T ss_dssp HHHHHHHHSSHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 466788899888888888765
No 2
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.97 E-value=2.6e+02 Score=20.35 Aligned_cols=49 Identities=10% Similarity=0.008 Sum_probs=33.8
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCc
Q 018609 188 VSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSD 236 (353)
Q Consensus 188 vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 236 (353)
.++..|+++.+..++..--..+-+...+........+..-....+++.+
T Consensus 161 aA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~~~~~ 209 (252)
T d2onkc1 161 VARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYY 209 (252)
T ss_dssp HHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHTTCCS
T ss_pred HHHhcCCCccccceEEEhHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 7889999999999998888777777777666655554333333344443
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.85 E-value=1.1e+02 Score=15.91 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=18.8
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018609 191 ELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFC 224 (353)
Q Consensus 191 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (353)
..|+-|.+.-.+.+.-.+++..-.++.+.+++.+
T Consensus 3 kHG~MDi~vQEKTF~gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 3 VAGSMDITQQEKTFAGFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp CTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665555555554444444443
No 4
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.16 E-value=94 Score=17.16 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=16.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHH
Q 018609 188 VSNELGAGNPQAAQLAACVVMVLAVTE 214 (353)
Q Consensus 188 vs~~~g~~~~~~~~~~~~~~~~~~~~~ 214 (353)
.++.+|++..|.++........++..-
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~ 28 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVG 28 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhh
Confidence 366777666666666666555544433
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.84 E-value=4.6e+02 Score=19.50 Aligned_cols=26 Identities=4% Similarity=-0.018 Sum_probs=12.9
Q ss_pred CCchHhhHHHHHHHHHHHHHHHHHHH
Q 018609 301 LRGKGLWIGIMTGSAVQAIVLAIITV 326 (353)
Q Consensus 301 ~g~~g~~~~~~~~~~~~~~~~~~~~~ 326 (353)
.|....++...+-..+..++.....+
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46666655554444444444444333
No 6
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=6.60 E-value=4.7e+02 Score=19.32 Aligned_cols=50 Identities=20% Similarity=0.034 Sum_probs=35.4
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q 018609 188 VSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDK 237 (353)
Q Consensus 188 vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 237 (353)
.++..|+++.+..++...-.++-+...+.+++...-+..-.....+..++
T Consensus 185 AA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~~f~~~~~~~~~~ 234 (290)
T d2r6gg1 185 AAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDV 234 (290)
T ss_dssp HHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHCCSG
T ss_pred hHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhccccccceeccCCC
Confidence 67888999999999988888888888777776665543333444444443
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.08 E-value=1.4e+02 Score=16.88 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=2.5
Q ss_pred hHHHHH
Q 018609 289 IPLASV 294 (353)
Q Consensus 289 i~~~~~ 294 (353)
+|..++
T Consensus 17 lP~t~i 22 (64)
T d2iuba2 17 MPLTFI 22 (64)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 8
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.35 E-value=2.3e+02 Score=14.38 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018609 196 NPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVL 229 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (353)
+.|+..+...-+.+....++++.=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3467778888888888888887777777666654
No 9
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=4.19 E-value=3e+02 Score=14.26 Aligned_cols=31 Identities=6% Similarity=-0.021 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018609 198 QAAQLAACVVMVLAVTEAVIVGTILFCCRYV 228 (353)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (353)
++..+.+..++.....++++.=++.+...|+
T Consensus 12 ~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 12 IAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4556677777777777777776676666554
No 10
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=4.03 E-value=5.1e+02 Score=16.62 Aligned_cols=29 Identities=7% Similarity=-0.072 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 018609 180 IGAAASTRVSNELGAGNPQAAQLAACVVM 208 (353)
Q Consensus 180 ~~~a~~~~vs~~~g~~~~~~~~~~~~~~~ 208 (353)
.+.++.+++|..|=.++++++++.....+
T Consensus 94 lad~fEAliGalYLd~~~e~~~~~i~~~~ 122 (127)
T d1u61a_ 94 HSTAFEALIGYHHLLNNRERLDEIVYKAI 122 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67888899999887788999999887764
Done!