Query 018611
Match_columns 353
No_of_seqs 197 out of 403
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 02:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 3.8E-26 8.3E-31 170.2 7.1 51 111-161 1-51 (51)
2 PLN03162 golden-2 like transcr 99.9 1.1E-23 2.5E-28 207.6 6.2 64 13-77 231-294 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.8 1E-21 2.3E-26 148.1 6.0 56 17-72 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.3 0.00053 1.1E-08 48.9 4.6 48 19-70 1-48 (48)
5 smart00426 TEA TEA domain. 90.1 0.35 7.6E-06 38.8 3.4 18 21-38 5-22 (68)
6 PF14379 Myb_CC_LHEQLE: MYB-CC 84.2 2.6 5.6E-05 32.3 4.9 28 126-154 6-33 (51)
7 PF15235 GRIN_C: G protein-reg 76.1 2.1 4.5E-05 38.5 2.4 19 133-151 71-89 (137)
8 TIGR02894 DNA_bind_RsfA transc 60.2 73 0.0016 29.6 8.9 51 14-70 43-93 (161)
9 smart00501 BRIGHT BRIGHT, ARID 57.6 8.6 0.00019 30.8 2.3 46 25-71 33-85 (93)
10 PF12776 Myb_DNA-bind_3: Myb/S 54.9 13 0.00027 29.1 2.8 51 21-71 1-63 (96)
11 cd00167 SANT 'SWI3, ADA2, N-Co 51.6 50 0.0011 21.4 4.9 43 21-68 1-43 (45)
12 smart00717 SANT SANT SWI3, AD 50.8 56 0.0012 21.4 5.1 43 20-68 2-45 (49)
13 PF01519 DUF16: Protein of unk 44.8 1.1E+02 0.0023 26.7 6.9 20 136-155 70-89 (102)
14 PF08127 Propeptide_C1: Peptid 29.7 31 0.00067 25.0 1.2 36 26-68 1-36 (41)
15 PF07384 DUF1497: Protein of u 28.3 46 0.001 26.0 2.1 22 20-41 36-57 (59)
16 KOG3841 TEF-1 and related tran 20.4 74 0.0016 33.5 2.4 57 17-75 74-147 (455)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.93 E-value=3.8e-26 Score=170.21 Aligned_cols=51 Identities=75% Similarity=1.055 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 018611 111 HLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLA 161 (353)
Q Consensus 111 ~~qItEALqmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAQe~La 161 (353)
|++|+|||++||||||||||||||||+||+|||||||||++|||||+++++
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999999999874
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=1.1e-23 Score=207.63 Aligned_cols=64 Identities=44% Similarity=0.768 Sum_probs=60.0
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchhhccccch
Q 018611 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHV 77 (353)
Q Consensus 13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYRl~~~~~~ 77 (353)
...+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.+++..
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~ 294 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLA 294 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccccc
Confidence 34789999999999999999999999 79999999999999999999999999999999988653
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.85 E-value=1e-21 Score=148.08 Aligned_cols=56 Identities=57% Similarity=0.974 Sum_probs=54.4
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchhhc
Q 018611 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72 (353)
Q Consensus 17 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYRl~ 72 (353)
|+|++||+|+|.+|++||+.||+.+.|+||.|++.|++++||+.+|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 79999999999999999999998899999999999999999999999999999975
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.25 E-value=0.00053 Score=48.85 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=40.7
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchh
Q 018611 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (353)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYR 70 (353)
|-.||++=+..|++||.++|. + .-+.|...|+ +|-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999993 1 5789999987 7999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=90.12 E-value=0.35 Score=38.85 Aligned_cols=18 Identities=28% Similarity=0.702 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 018611 21 KWTPELHQRFVDAVNHLG 38 (353)
Q Consensus 21 rWT~ELH~rFV~AV~qLG 38 (353)
.|.++|-..|++|+...-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 799999999999999774
No 6
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=84.18 E-value=2.6 Score=32.29 Aligned_cols=28 Identities=39% Similarity=0.513 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018611 126 RKLHEQIEVQRHLQLRIEAQGKYLQSVLK 154 (353)
Q Consensus 126 rrLHEQLEVQRhLQLRIEAQGKYLQsILE 154 (353)
--|..|+||||+|.=.+|.| |-||.=+|
T Consensus 6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrie 33 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIE 33 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 56788999999998888888 45665454
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=76.09 E-value=2.1 Score=38.51 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 018611 133 EVQRHLQLRIEAQGKYLQS 151 (353)
Q Consensus 133 EVQRhLQLRIEAQGKYLQs 151 (353)
.||+||+++||.|++....
T Consensus 71 AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 4899999999999987754
No 8
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=60.21 E-value=73 Score=29.58 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=38.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchh
Q 018611 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (353)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYR 70 (353)
|.+...|||+..+-..+.+||...- -.+-.++.. ...||+..|-+-||.|.
T Consensus 43 TsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~ 93 (161)
T TIGR02894 43 TAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLK 93 (161)
T ss_pred cHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHH
Confidence 5678899999999999999998643 122222221 35699999999999886
No 9
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=57.59 E-value=8.6 Score=30.76 Aligned_cols=46 Identities=33% Similarity=0.538 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCCCCC----chhHHhhhCCCCc---CHHHHHhhhhchhh
Q 018611 25 ELHQRFVDAVNHLGGPDKAT----PKSLMRVMGIPGL---TLYHLKSHLQKYRL 71 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAt----PK~IL~lM~V~GL---T~~hVkSHLQKYRl 71 (353)
+|++-|. +|..+||.+..+ =+.|.+.||+|.- ...++++|..||=+
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 6899898 599999987544 2568889999752 34678999888844
No 10
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=54.87 E-value=13 Score=29.10 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHHh---CCC-CCCCch-----hHHhhhCC-C--CcCHHHHHhhhhchhh
Q 018611 21 KWTPELHQRFVDAVNHL---GGP-DKATPK-----SLMRVMGI-P--GLTLYHLKSHLQKYRL 71 (353)
Q Consensus 21 rWT~ELH~rFV~AV~qL---GG~-dkAtPK-----~IL~lM~V-~--GLT~~hVkSHLQKYRl 71 (353)
+||++..+-||+.+-+. |.- ....+| .|.+.|+- + .+|..+|++|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 69999999999988643 433 233333 34444443 3 4677899999876653
No 11
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=51.55 E-value=50 Score=21.37 Aligned_cols=43 Identities=21% Similarity=0.409 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhc
Q 018611 21 KWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQK 68 (353)
Q Consensus 21 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQK 68 (353)
.||++=+..|+.++..+|- ..-+.|-+.| ++=|...|+.|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~--~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKEL--PGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHc--CCCCHHHHHHHHHH
Confidence 4999999999999999992 2345676665 44677778777654
No 12
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=50.78 E-value=56 Score=21.36 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=31.9
Q ss_pred ccCCHHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCcCHHHHHhhhhc
Q 018611 20 LKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQK 68 (353)
Q Consensus 20 lrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVkSHLQK 68 (353)
-.||++=...|+.+|.++| + .=+.|-..| ++=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~----~w~~Ia~~~--~~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN----NWEKIAKEL--PGRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC----CHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4699999999999999998 3 234665554 36677777776554
No 13
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=44.84 E-value=1.1e+02 Score=26.69 Aligned_cols=20 Identities=50% Similarity=0.655 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 018611 136 RHLQLRIEAQGKYLQSVLKK 155 (353)
Q Consensus 136 RhLQLRIEAQGKYLQsILEK 155 (353)
+.||.+|.+||+-|++|++.
T Consensus 70 kel~~e~k~qgktL~~I~~~ 89 (102)
T PF01519_consen 70 KELQVEQKAQGKTLQLILKT 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999974
No 14
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=29.68 E-value=31 Score=24.98 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhc
Q 018611 26 LHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQK 68 (353)
Q Consensus 26 LH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQK 68 (353)
|-+.||+-|+...-..+|..- .++.|..+|++.|.-
T Consensus 1 Lsde~I~~IN~~~~tWkAG~N-------F~~~~~~~ik~LlGv 36 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRN-------FENTSIEYIKRLLGV 36 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE-----------SSB-HHHHHHCS-B
T ss_pred CCHHHHHHHHcCCCcccCCCC-------CCCCCHHHHHHHcCC
Confidence 457899999998767777633 578888888887754
No 15
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=28.35 E-value=46 Score=26.00 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=19.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCC
Q 018611 20 LKWTPELHQRFVDAVNHLGGPD 41 (353)
Q Consensus 20 lrWT~ELH~rFV~AV~qLGG~d 41 (353)
-.+..|+|..|-+-|..|||-+
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 3578999999999999999843
No 16
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=20.43 E-value=74 Score=33.47 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=36.6
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhh----CC-------------CCcCHHHHHhhhhchhhcccc
Q 018611 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVM----GI-------------PGLTLYHLKSHLQKYRLGKSQ 75 (353)
Q Consensus 17 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM----~V-------------~GLT~~hVkSHLQKYRl~~~~ 75 (353)
-.-=+|.|+.-+.|.+|+...- .--+-|-||.-- |- +-=|+.+|.||.|..-..+.+
T Consensus 74 daegvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~r 147 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLR 147 (455)
T ss_pred ccccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999763 222444454221 11 224677899999976544433
Done!