Query 018611
Match_columns 353
No_of_seqs 197 out of 403
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 03:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 1.5E-29 5E-34 194.5 6.2 62 13-75 1-62 (64)
2 2yum_A ZZZ3 protein, zinc fing 89.0 0.81 2.8E-05 34.2 5.7 56 15-73 4-62 (75)
3 2hzd_A Transcriptional enhance 85.8 0.74 2.5E-05 37.0 3.9 57 15-73 2-75 (82)
4 1x41_A Transcriptional adaptor 85.1 2.4 8.1E-05 30.7 6.1 52 15-71 4-55 (60)
5 2yus_A SWI/SNF-related matrix- 84.9 1.9 6.5E-05 33.4 5.9 46 18-69 17-62 (79)
6 2cu7_A KIAA1915 protein; nucle 84.8 1.6 5.5E-05 32.6 5.3 52 15-72 5-56 (72)
7 2xag_B REST corepressor 1; ami 78.1 3.2 0.00011 42.2 6.2 56 15-76 376-431 (482)
8 2iw5_B Protein corest, REST co 76.2 2.6 9E-05 39.5 4.6 56 13-74 127-182 (235)
9 2cqq_A RSGI RUH-037, DNAJ homo 75.2 3.3 0.00011 31.7 4.3 48 17-70 6-56 (72)
10 2elk_A SPCC24B10.08C protein; 68.6 4.8 0.00016 29.0 3.6 47 19-70 9-56 (58)
11 2ba2_A D12_ORF131, hypothetica 66.8 15 0.00052 29.7 6.4 40 113-155 33-72 (85)
12 3sjm_A Telomeric repeat-bindin 66.4 13 0.00046 27.4 5.7 52 13-67 5-56 (64)
13 2d9a_A B-MYB, MYB-related prot 65.8 18 0.0006 25.7 6.1 51 14-69 3-53 (60)
14 1ity_A TRF1; helix-turn-helix, 62.8 12 0.00041 27.5 4.9 52 15-70 6-58 (69)
15 1guu_A C-MYB, MYB proto-oncoge 61.1 17 0.0006 24.9 5.2 46 19-69 3-48 (52)
16 2cqr_A RSGI RUH-043, DNAJ homo 60.3 20 0.00069 27.4 5.9 50 18-70 17-67 (73)
17 1gvd_A MYB proto-oncogene prot 51.5 30 0.001 23.8 5.1 47 19-70 3-49 (52)
18 1wgx_A KIAA1903 protein; MYB D 50.9 28 0.00095 27.0 5.3 47 21-70 10-57 (73)
19 2yqk_A Arginine-glutamic acid 49.3 16 0.00056 26.8 3.6 48 14-66 4-51 (63)
20 3uun_A Dystrophin; triple heli 48.5 66 0.0023 24.0 7.1 54 129-182 39-92 (119)
21 2cjj_A Radialis; plant develop 48.4 31 0.0011 27.5 5.4 47 19-70 8-57 (93)
22 2kes_A Synphilin-1; synphillin 48.4 17 0.00058 26.5 3.4 24 123-146 15-42 (48)
23 2dim_A Cell division cycle 5-l 47.7 48 0.0016 24.2 6.0 51 14-69 4-54 (70)
24 3uul_A Utrophin; spectrin repe 44.9 96 0.0033 23.2 7.5 54 130-183 40-93 (118)
25 2eqr_A N-COR1, N-COR, nuclear 43.0 20 0.00067 26.0 3.2 46 15-66 8-53 (61)
26 2lm1_A Lysine-specific demethy 42.7 7.5 0.00026 30.9 0.9 46 25-71 45-96 (107)
27 1c20_A DEAD ringer protein; DN 39.7 9 0.00031 31.6 1.0 47 25-72 53-106 (128)
28 4eef_G F-HB80.4, designed hema 39.1 14 0.00046 29.2 1.9 46 19-67 20-66 (74)
29 2eqy_A RBP2 like, jumonji, at 38.9 11 0.00039 30.9 1.5 48 25-73 43-96 (122)
30 2jrz_A Histone demethylase jar 37.2 10 0.00035 30.9 1.0 49 25-74 41-95 (117)
31 2cxy_A BAF250B subunit, HBAF25 36.8 10 0.00034 31.2 0.9 47 25-72 52-104 (125)
32 1w0t_A Telomeric repeat bindin 36.3 92 0.0032 21.5 5.7 48 19-69 2-49 (53)
33 2jxj_A Histone demethylase jar 35.3 11 0.00039 29.2 0.9 45 25-70 37-87 (96)
34 2crg_A Metastasis associated p 32.9 41 0.0014 25.2 3.6 48 14-66 3-50 (70)
35 2li6_A SWI/SNF chromatin-remod 32.4 11 0.00038 30.6 0.4 48 25-75 50-101 (116)
36 1ig6_A MRF-2, modulator recogn 30.9 9.1 0.00031 30.5 -0.3 51 24-75 33-90 (107)
37 2kk0_A AT-rich interactive dom 28.7 20 0.00069 30.3 1.4 47 25-72 65-118 (145)
38 2rq5_A Protein jumonji; develo 28.1 22 0.00076 29.6 1.6 49 25-74 43-98 (121)
39 1kkx_A Transcription regulator 26.3 22 0.00075 29.5 1.2 48 25-75 49-100 (123)
40 2elh_A CG11849-PA, LD40883P; s 24.9 1.3E+02 0.0044 22.4 5.2 57 6-70 6-63 (87)
41 1gv2_A C-MYB, MYB proto-oncoge 24.7 1.3E+02 0.0044 23.2 5.3 46 19-69 4-49 (105)
42 3ok8_A Brain-specific angiogen 22.8 1.9E+02 0.0066 26.6 6.8 43 112-154 71-122 (222)
43 3kdq_A Uncharacterized conserv 22.0 91 0.0031 27.0 4.3 59 110-186 2-66 (154)
44 2aje_A Telomere repeat-binding 21.5 1.8E+02 0.006 23.7 5.7 52 14-68 8-61 (105)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=1.5e-29 Score=194.48 Aligned_cols=62 Identities=42% Similarity=0.792 Sum_probs=58.9
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchhhcccc
Q 018611 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75 (353)
Q Consensus 13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYRl~~~~ 75 (353)
++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||+|||||||+...+
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999 799999999999999999999999999999987654
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.95 E-value=0.81 Score=34.25 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=41.9
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCc---hhHHhhhCCCCcCHHHHHhhhhchhhcc
Q 018611 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATP---KSLMRVMGIPGLTLYHLKSHLQKYRLGK 73 (353)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtP---K~IL~lM~V~GLT~~hVkSHLQKYRl~~ 73 (353)
+...+-.||+|=+.+|++||..+| .+...| ..|-+. |+|=|-.+|+.|.++|-...
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADE--LGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 344566899999999999999999 322222 345555 47899999999999996443
No 3
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=85.76 E-value=0.74 Score=36.95 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=36.1
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCC-----------------CCcCHHHHHhhhhchhhcc
Q 018611 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGI-----------------PGLTLYHLKSHLQKYRLGK 73 (353)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V-----------------~GLT~~hVkSHLQKYRl~~ 73 (353)
|.+..-+|.++|-..|++|+...-=.... |-+|..-|. .-=|+.+|.||||.-|..+
T Consensus 2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 2 DNDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp CGGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 45567789999999999999977411122 222311111 2236678999999766443
No 4
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=85.11 E-value=2.4 Score=30.69 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchhh
Q 018611 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 (353)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYRl 71 (353)
..-.+-.||+|=..+|++||..+| .. .=+.|-+.| ||=|-.+++.|.++|-.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G-~~--~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCG-FG--NWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTC-TT--CHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-cC--cHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 445667899999999999999999 11 224666665 78888999999887743
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=84.93 E-value=1.9 Score=33.42 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=38.5
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhch
Q 018611 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (353)
Q Consensus 18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKY 69 (353)
.+-.||++=+.+|++||...|+- =+.|-+.| ++=|..+++.|.++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v--~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDD----WNKVSEHV--GSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHc--CCCCHHHHHHHHHHh
Confidence 46789999999999999999942 35777775 578999999999987
No 6
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=84.79 E-value=1.6 Score=32.60 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=41.6
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchhhc
Q 018611 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72 (353)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYRl~ 72 (353)
+...+-.||+|=+..|++||..+|- .=..|-+. +||=|-.+|+.|.++|-..
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 3456778999999999999999993 33566665 5899999999999988533
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=78.10 E-value=3.2 Score=42.18 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=44.6
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchhhccccc
Q 018611 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQH 76 (353)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYRl~~~~~ 76 (353)
..+..-+||++=|..|++||.+.|- .=+.|-++++- =|..+|++|.++||......
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~ld 431 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNID 431 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhChH
Confidence 3456789999999999999999983 34577777554 58999999999998765543
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=76.16 E-value=2.6 Score=39.45 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=45.4
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchhhccc
Q 018611 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74 (353)
Q Consensus 13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYRl~~~ 74 (353)
.+..+..-+||++=+..|++|+...|-- =..|-++ |++=|..+|++|..+||....
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGRD----FQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 4455778899999999999999999921 3466666 678999999999999986544
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=75.24 E-value=3.3 Score=31.69 Aligned_cols=48 Identities=15% Similarity=0.347 Sum_probs=37.1
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCCchh---HHhhhCCCCcCHHHHHhhhhchh
Q 018611 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKS---LMRVMGIPGLTLYHLKSHLQKYR 70 (353)
Q Consensus 17 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~GLT~~hVkSHLQKYR 70 (353)
...-.||.|=+.+|+.|+..+++ -||.+ |-..| |=|-..|+.|.+++.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 34457999999999999999973 35654 55555 578999999988764
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=68.60 E-value=4.8 Score=29.00 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=35.8
Q ss_pred CccCCHHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCcCHHHHHhhhhchh
Q 018611 19 RLKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (353)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYR 70 (353)
+-.||++=..++++||...| +- =+.|-+.|+. |=|-.+++.|..+|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 45799999999999999999 32 2456566431 678888988888764
No 11
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=66.79 E-value=15 Score=29.71 Aligned_cols=40 Identities=35% Similarity=0.421 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018611 113 QIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKK 155 (353)
Q Consensus 113 qItEALqmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEK 155 (353)
.|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+-
T Consensus 33 kie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~t 72 (85)
T 2ba2_A 33 VVMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEA 72 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 36677777666555555665 88899999999999999974
No 12
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=66.41 E-value=13 Score=27.42 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=35.7
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhh
Q 018611 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQ 67 (353)
Q Consensus 13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQ 67 (353)
++..+.|-.||+|=-++++++|.+.|. . .=+.|.+.+.++|=|-.+++-+..
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHHH
Confidence 455566788999999999999999982 1 234677777767777777765443
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=65.75 E-value=18 Score=25.71 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=38.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhch
Q 018611 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (353)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKY 69 (353)
.+...|-.||+|=..+++++|.++|. . .=..|-+. ++|=|-.+++.|..+|
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~--~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ-Q--DWKFLASH--FPNRTDQQCQYRWLRV 53 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT-T--CHHHHHHH--CSSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHH--ccCCCHHHHHHHHHHH
Confidence 34567789999999999999999981 1 12455555 4678888888887766
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=62.85 E-value=12 Score=27.48 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=40.3
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCcCHHHHHhhhhchh
Q 018611 15 DAKPRLKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (353)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYR 70 (353)
.++.|-.||+|=-...+++|..+| | .=+.|...|+..|=|-.+++-+...|-
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~----~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEG----NWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSS----CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC----cHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 567888999999999999999999 3 235777777544778888887766653
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=61.05 E-value=17 Score=24.95 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=35.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhch
Q 018611 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (353)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKY 69 (353)
+-.||+|=..+++++|.+.|. ..=+.|-+. +||=|-.+++.|..+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~--~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANY--LPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHT--STTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 558999999999999999982 123566555 4688888888887765
No 16
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=60.27 E-value=20 Score=27.41 Aligned_cols=50 Identities=8% Similarity=0.110 Sum_probs=38.3
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhh-hCCCCcCHHHHHhhhhchh
Q 018611 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRV-MGIPGLTLYHLKSHLQKYR 70 (353)
Q Consensus 18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l-M~V~GLT~~hVkSHLQKYR 70 (353)
.+-.||++=...|+.||..+|. -+|..--++ --|||=|-.+|+.|.+.+.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3446999999999999999982 267543322 2368999999999988764
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=51.51 E-value=30 Score=23.77 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=34.9
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchh
Q 018611 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (353)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYR 70 (353)
+-.||+|=..+++++|.+.|. . .=..|-+. ++|=|-.+++.|...|-
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~--~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP-K--RWSVIAKH--LKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT-T--CHHHHHTT--STTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--hHHHHHHH--cCCCCHHHHHHHHHHHc
Confidence 457999999999999999982 1 12355555 46788888888877663
No 18
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=50.92 E-value=28 Score=27.00 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCchhHHhh-hCCCCcCHHHHHhhhhchh
Q 018611 21 KWTPELHQRFVDAVNHLGGPDKATPKSLMRV-MGIPGLTLYHLKSHLQKYR 70 (353)
Q Consensus 21 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l-M~V~GLT~~hVkSHLQKYR 70 (353)
.||.+=..+|..|+..++ +.+|-+--++ .-|||=|.+.|..|.....
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 699999999999999986 4478654332 2378999999998877553
No 19
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.25 E-value=16 Score=26.79 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhh
Q 018611 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHL 66 (353)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHL 66 (353)
.+...+-.||++=|..|.+|+...|= + =..|-+.| ||.=|...|..+.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHHH
Confidence 34455679999999999999999981 1 13343311 5667777776554
No 20
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=48.49 E-value=66 Score=24.02 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHHHhH
Q 018611 129 HEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVS 182 (353)
Q Consensus 129 HEQLEVQRhLQLRIEAQGKYLQsILEKAQe~La~~~ss~~gleaakaeLSeLvs 182 (353)
..||+-.+.|+--|+++..-+.+|.+.|++-+.....++.....-+..+..|-.
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~ 92 (119)
T 3uun_A 39 KDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNS 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 344555566777788888889999999988887554444433334455555443
No 21
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=48.44 E-value=31 Score=27.55 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=37.7
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCch---hHHhhhCCCCcCHHHHHhhhhchh
Q 018611 19 RLKWTPELHQRFVDAVNHLGGPDKATPK---SLMRVMGIPGLTLYHLKSHLQKYR 70 (353)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK---~IL~lM~V~GLT~~hVkSHLQKYR 70 (353)
.-.||++=...|+.|+..+| . -+|. .|-.. |||=|-.+|+.|...+.
T Consensus 8 ~~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~--vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYD-K--DTPDRWANVARA--VEGRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHH--STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 44799999999999999998 2 2554 45455 68999999999998774
No 22
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=48.40 E-value=17 Score=26.47 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=18.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHh
Q 018611 123 EVQRKLHEQ----IEVQRHLQLRIEAQG 146 (353)
Q Consensus 123 EVQrrLHEQ----LEVQRhLQLRIEAQG 146 (353)
.+-|.|+|| +-+|.+||.-+|||.
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456778887 568888888888873
No 23
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.73 E-value=48 Score=24.19 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=38.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhch
Q 018611 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (353)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKY 69 (353)
.+...|-.||++=.++++++|...| . ..=+.|-..| +|=|-.+++-|...|
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G-~--~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYG-K--NQWSRIASLL--HRKSAKQCKARWYEW 54 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTC-S--SCHHHHHHHS--TTCCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHh--cCCCHHHHHHHHHHH
Confidence 3455677899999999999999998 1 1235666665 477888888777766
No 24
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=44.92 E-value=96 Score=23.23 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHHHhHh
Q 018611 130 EQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSM 183 (353)
Q Consensus 130 EQLEVQRhLQLRIEAQGKYLQsILEKAQe~La~~~ss~~gleaakaeLSeLvs~ 183 (353)
.||+-.+.|+--|.++..-+.+|.+.|++-+.....++.....-+..+..|-..
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~r 93 (118)
T 3uul_A 40 EQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNAR 93 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Confidence 444455667777888888999999999888875544444434445555555443
No 25
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.97 E-value=20 Score=26.01 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=34.7
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhh
Q 018611 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHL 66 (353)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHL 66 (353)
.++..-.||++=|+.|++|+...|- + =..|-.. ||+=|..+|..|.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk--~--w~~Ia~~--l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK--N--FGLIASY--LERKSVPDCVLYY 53 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT--C--HHHHHHH--CTTSCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC--C--HHHHHHH--cCCCCHHHHHHHH
Confidence 3566789999999999999999982 2 2455544 6788888887654
No 26
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=42.67 E-value=7.5 Score=30.86 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcC--HHHHHhhhhchhh
Q 018611 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRL 71 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT--~~hVkSHLQKYRl 71 (353)
+||.-|.. |..+||.++.+- +.|.+.||+|.-| -..++.|..||=+
T Consensus 45 dL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 45 DLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 68888876 788999887664 4678889997532 2467888777743
No 27
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=39.66 E-value=9 Score=31.60 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCc-C--HHHHHhhhhchhhc
Q 018611 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGL-T--LYHLKSHLQKYRLG 72 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GL-T--~~hVkSHLQKYRl~ 72 (353)
+||.-|.. |..+||.++.+- +.|.+.||+|.- | ...++.|..||=+.
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 68888876 788999887654 467888998752 2 46788888887543
No 28
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=39.09 E-value=14 Score=29.23 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=34.7
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhh-CCCCcCHHHHHhhhh
Q 018611 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVM-GIPGLTLYHLKSHLQ 67 (353)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~V~GLT~~hVkSHLQ 67 (353)
--.||.+=.+.|..|+...+ +-||.+--++- -|||=|.+.|+.|.+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 34699999999999998875 55675543322 278999999999987
No 29
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.92 E-value=11 Score=30.93 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcC--HHHHHhhhhchhhcc
Q 018611 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLGK 73 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT--~~hVkSHLQKYRl~~ 73 (353)
+|++-|.. |..+||.++.+- +.|.+.||+|.-+ ...++.|..||=+..
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 68888875 889999887664 4678889997533 247788888875443
No 30
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=37.24 E-value=10 Score=30.91 Aligned_cols=49 Identities=16% Similarity=0.088 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcC--HHHHHhhhhchhhccc
Q 018611 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLGKS 74 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT--~~hVkSHLQKYRl~~~ 74 (353)
+|+.-|.. |..+||.++.+- +.|.+.||+|.-| -..++.|..||=+...
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 68888875 788999887664 4678889997433 3578888888854433
No 31
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=36.84 E-value=10 Score=31.24 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcC--HHHHHhhhhchhhc
Q 018611 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLG 72 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT--~~hVkSHLQKYRl~ 72 (353)
+||.-|.. |..+||.++.+- +.|.+.||+|.-| -..++.|..||=+.
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 68888875 789999886653 4678889998642 24677777777443
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=36.32 E-value=92 Score=21.46 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=34.6
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhch
Q 018611 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (353)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKY 69 (353)
|-.||+|=....+++|...|. . .=+.|.+.|+..|=|-.+++-+...|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE-G--NWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--CHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999991 1 23567777654466777777655444
No 33
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=35.27 E-value=11 Score=29.25 Aligned_cols=45 Identities=22% Similarity=0.097 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcC--HHHHHhhhhchh
Q 018611 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYR 70 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT--~~hVkSHLQKYR 70 (353)
+|+.-|.. |...||.++.+- +.|.+.||+|.-+ -..++.|..||=
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L 87 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERIL 87 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTT
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHH
Confidence 57777765 788999987664 4678889986432 346777777774
No 34
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=32.90 E-value=41 Score=25.24 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=34.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhh
Q 018611 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHL 66 (353)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHL 66 (353)
+.++..-.||++=|..|.+|+...|= + =..|-+. -||+-|...|..+.
T Consensus 3 ~~r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 3 SGSSGMEEWSASEACLFEEALEKYGK-D---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHH-HcCCCCHHHHHHHH
Confidence 45577779999999999999999981 1 2344331 16778887777665
No 35
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.44 E-value=11 Score=30.61 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcCHHHHHhhhhchhhcccc
Q 018611 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT~~hVkSHLQKYRl~~~~ 75 (353)
+|+.-|.. |...||.++.+. +.|.+.||+|. -..++.|..||=+....
T Consensus 50 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 50 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLPYER 101 (116)
T ss_dssp STTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHSHHHH
T ss_pred cHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHHHHHH
Confidence 67777765 888999887664 56788999987 57889998888654433
No 36
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=30.87 E-value=9.1 Score=30.49 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCC-cC--HHHHHhhhhchhhcccc
Q 018611 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPG-LT--LYHLKSHLQKYRLGKSQ 75 (353)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~G-LT--~~hVkSHLQKYRl~~~~ 75 (353)
-+|+.-|.. |..+||.++.+- +.|.+.||++. .| -..++.|..||=+....
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~ 90 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 90 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 368888875 789999887664 46778899864 22 25788888888554433
No 37
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=28.73 E-value=20 Score=30.33 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCc-C--HHHHHhhhhchhhc
Q 018611 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGL-T--LYHLKSHLQKYRLG 72 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GL-T--~~hVkSHLQKYRl~ 72 (353)
+|+.-|.. |..+||.++.+- +.|.+.||+|.- | .+.++.|..||=+.
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 68888875 789999887664 467888999762 2 35788888887543
No 38
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=28.08 E-value=22 Score=29.56 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcC---HHHHHhhhhchhhccc
Q 018611 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT---LYHLKSHLQKYRLGKS 74 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT---~~hVkSHLQKYRl~~~ 74 (353)
+|+.-| .+|..+||.++.+- +.|...||+|... .+.++.|..||=+...
T Consensus 43 DL~~Ly-~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 43 DLACFF-RLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp CHHHHH-HHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred cHHHHH-HHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 567666 46888999887765 4677889987543 4678888888865443
No 39
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=26.28 E-value=22 Score=29.46 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcCHHHHHhhhhchhhcccc
Q 018611 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75 (353)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT~~hVkSHLQKYRl~~~~ 75 (353)
+|+.-|.. |..+||.++.+. +.|.+.||+|. -..++.|..||=+....
T Consensus 49 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 49 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLPYER 100 (123)
T ss_dssp CTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHHHHH
Confidence 57777765 899999988775 46788999987 67889988888654433
No 40
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=24.86 E-value=1.3e+02 Score=22.38 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=36.6
Q ss_pred ccceeeecC-CCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhchh
Q 018611 6 QNMNLVLST-DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (353)
Q Consensus 6 Q~~~~Vlst-~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKYR 70 (353)
|.|++.++. .++++-++|+++-...|..+. +| .+...|-+.+||. ...|...+.+|+
T Consensus 6 ~~~~~~m~~~~~~~~~~ys~e~k~~~v~~~~--~g---~s~~~iA~~~gIs---~sTl~rW~k~~~ 63 (87)
T 2elh_A 6 SGMNIRMGTKGKRPLRSLTPRDKIHAIQRIH--DG---ESKASVARDIGVP---ESTLRGWCKNED 63 (87)
T ss_dssp CCCCCCCCSCCSSCCSSCCHHHHHHHHHHHH--HT---CCHHHHHHHHTCC---HHHHHHHHHHHH
T ss_pred cccchhhhccCCCCCCCCCHHHHHHHHHHHH--CC---CCHHHHHHHHCcC---HHHHHHHHHHHH
Confidence 355554444 344667899999888777773 33 3677888888884 444444555555
No 41
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=24.67 E-value=1.3e+02 Score=23.16 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=34.9
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCcCHHHHHhhhhch
Q 018611 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (353)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVkSHLQKY 69 (353)
+-.||+|=..+++++|...|. . .=+.|-..| ||=|..+++.|...|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~-~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-C--cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 457999999999999999983 1 123565554 788888888777665
No 42
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=22.75 E-value=1.9e+02 Score=26.56 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHH
Q 018611 112 LQIAQALQVQMEVQRKLHEQIEV---------QRHLQLRIEAQGKYLQSVLK 154 (353)
Q Consensus 112 ~qItEALqmQmEVQrrLHEQLEV---------QRhLQLRIEAQGKYLQsILE 154 (353)
-.|.+||.-=-|+||+|..+||. =.+|+.+||.-.||++....
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K 122 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQ 122 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778886666999999999874 46899999999999986543
No 43
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=22.03 E-value=91 Score=27.00 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=37.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCc------cchHhHHHHHHHHhHh
Q 018611 110 NHLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSS------AGVELAKAELSQLVSM 183 (353)
Q Consensus 110 n~~qItEALqmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAQe~La~~~ss~------~gleaakaeLSeLvs~ 183 (353)
++|.++|||.+--.+|||+ .+|+-||..-- ..--|..++- .-++..-.+|..|+..
T Consensus 2 ~~MKLAEAL~lRadl~kri-------~qL~~ri~~n~-----------~vQEGe~P~edp~~Ll~El~~~~~~L~~Li~~ 63 (154)
T 3kdq_A 2 NAMYLAEALAQRVEAQRRY-------SELNQLLLDVA-----------KVQEGDQPAENPHEILTELEELTTRINDLVRR 63 (154)
T ss_dssp -CCBHHHHHHHHHHHHHHH-------HHHHHHHHHTT-----------EEETTCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHH-------HHHHHHHHhcC-----------eecCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999 45666665431 1112222221 1355567778888877
Q ss_pred hhc
Q 018611 184 VSM 186 (353)
Q Consensus 184 v~~ 186 (353)
||.
T Consensus 64 IN~ 66 (154)
T 3kdq_A 64 INR 66 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=21.51 E-value=1.8e+02 Score=23.75 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=38.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCCchhHHhhhC--CCCcCHHHHHhhhhc
Q 018611 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMG--IPGLTLYHLKSHLQK 68 (353)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~--V~GLT~~hVkSHLQK 68 (353)
..++.|-.||+|=-+.++++|..+|. . .=+.|++.+. .+|=|--++|-+...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdrWrn 61 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDKWKT 61 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 35788999999999999999999993 1 1246766542 377788888865443
Done!