BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018612
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 284 bits (727), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 141/254 (55%), Positives = 170/254 (66%), Gaps = 4/254 (1%)
Query: 74 ADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCS 133
AD+I LPGQP VDFD Y+GY+TVD AGR+LFY E+P+ + PLVLWLNGGPGCS
Sbjct: 8 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 134 SLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGD 193
S+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GD
Sbjct: 67 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 194 NNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGI 253
N TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGF 184
Query: 254 AIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVRE 312
+GN IDD G F+F+W H + SD+T + + C + S +CD E
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 244
Query: 313 YGQIDLYNVYAPLC 326
G ID+Y++Y P+C
Sbjct: 245 QGNIDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 284 bits (727), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 141/254 (55%), Positives = 170/254 (66%), Gaps = 4/254 (1%)
Query: 74 ADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCS 133
AD+I LPGQP VDFD Y+GY+TVD AGR+LFY E+P+ + PLVLWLNGGPGCS
Sbjct: 3 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 61
Query: 134 SLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGD 193
S+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GD
Sbjct: 62 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 121
Query: 194 NNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGI 253
N TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG
Sbjct: 122 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGF 179
Query: 254 AIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVRE 312
+GN IDD G F+F+W H + SD+T + + C + S +CD E
Sbjct: 180 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 239
Query: 313 YGQIDLYNVYAPLC 326
G ID+Y++Y P+C
Sbjct: 240 QGNIDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 284 bits (726), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 141/254 (55%), Positives = 170/254 (66%), Gaps = 4/254 (1%)
Query: 74 ADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCS 133
AD+I LPGQP VDFD Y+GY+TVD AGR+LFY E+P+ + PLVLWLNGGPGCS
Sbjct: 4 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 62
Query: 134 SLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGD 193
S+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GD
Sbjct: 63 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 122
Query: 194 NNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGI 253
N TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG
Sbjct: 123 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGF 180
Query: 254 AIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVRE 312
+GN IDD G F+F+W H + SD+T + + C + S +CD E
Sbjct: 181 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 240
Query: 313 YGQIDLYNVYAPLC 326
G ID+Y++Y P+C
Sbjct: 241 QGNIDMYSLYTPVC 254
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 284 bits (726), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 141/254 (55%), Positives = 170/254 (66%), Gaps = 4/254 (1%)
Query: 74 ADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCS 133
AD+I LPGQP VDFD Y+GY+TVD AGR+LFY E+P+ + PLVLWLNGGPGCS
Sbjct: 8 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 134 SLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGD 193
S+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GD
Sbjct: 67 SVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 194 NNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGI 253
N TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGF 184
Query: 254 AIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVRE 312
+GN IDD G F+F+W H + SD+T + + C + S +CD E
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 244
Query: 313 YGQIDLYNVYAPLC 326
G ID+Y++Y P+C
Sbjct: 245 QGNIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 250 bits (638), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 169/262 (64%), Gaps = 5/262 (1%)
Query: 73 EADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKP-LVLWLNGGPG 131
E D+I LPGQP GV F Y GY+T+D GRAL+Y+F E+ + + LVLWLNGGPG
Sbjct: 6 EDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPG 65
Query: 132 CSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNP 191
CSS+G GAM+ELG FRV+++G++L NEYAWN AN+LF E+PAGVGFSYSNTSSD S
Sbjct: 66 CSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSM- 124
Query: 192 GDNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLK 251
GD+ A+D+YTFLV WFERFP Y R+F+I GES GH++PQL+ + + IN +
Sbjct: 125 GDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSPFINFQ 182
Query: 252 GIAIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATGQLST-SCDQYQTQGV 310
G+ + + +D+ GMF+ +W H L SDET + K C + T C + + +
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWNKAL 242
Query: 311 REYGQIDLYNVYAPLCKSSAPP 332
E G I+ Y +Y P C P
Sbjct: 243 AEQGNINPYTIYTPTCDREPSP 264
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 149/267 (55%), Gaps = 19/267 (7%)
Query: 73 EADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGC 132
+ D+I+ LPG + F QY+GYL + L Y+FVES + + P+VLWLNGGPGC
Sbjct: 3 DQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPGC 60
Query: 133 SSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPG 192
SSL G + E GPF V DG TL N Y+WN +ANVL+LE+PAGVGFSYS+ +N
Sbjct: 61 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN-- 117
Query: 193 DNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKG 252
D A+ ++ L ++F FP+YKN F+TGESYAG Y+P LA ++ + +NL+G
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS----MNLQG 173
Query: 253 IAIGNAWIDDNLCTKGMFDFFWTHAL------NSDETNAAINKYCDFATGQLSTSCDQYQ 306
+A+GN + F + H L +S +T+ C+F + C
Sbjct: 174 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNK-DLECVTNL 232
Query: 307 TQGVREYGQ--IDLYNVYAPLCKSSAP 331
+ R G +++YN+YAP C P
Sbjct: 233 QEVARIVGNSGLNIYNLYAP-CAGGVP 258
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 149/267 (55%), Gaps = 19/267 (7%)
Query: 73 EADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGC 132
+ D+I+ LPG + F QY+GYL + L Y+FVES + + P+VLWLNGGPGC
Sbjct: 5 DQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPGC 62
Query: 133 SSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPG 192
SSL G + E GPF V DG TL N Y+WN +ANVL+LE+PAGVGFSYS+ +N
Sbjct: 63 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN-- 119
Query: 193 DNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKG 252
D A+ ++ L ++F FP+YKN F+TGESYAG Y+P LA ++ + +NL+G
Sbjct: 120 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS----MNLQG 175
Query: 253 IAIGNAWIDDNLCTKGMFDFFWTHAL------NSDETNAAINKYCDFATGQLSTSCDQYQ 306
+A+GN + F + H L +S +T+ C+F + C
Sbjct: 176 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNK-DLECVTNL 234
Query: 307 TQGVREYGQ--IDLYNVYAPLCKSSAP 331
+ R G +++YN+YAP C P
Sbjct: 235 QEVARIVGNSGLNIYNLYAP-CAGGVP 260
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 103/176 (58%), Gaps = 16/176 (9%)
Query: 91 QYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAMEELGPFRVNS 150
QY GYL V+ + + F++ ES + P++LWLNGGPGCSSL G ELGP +
Sbjct: 16 QYTGYLDVEDE-DKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIGP 73
Query: 151 DGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNT---AEDSYTFLVNW 207
D K + N Y+WN+ A V+FL+ P VGFSYS +S G +NT +D Y FL +
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSS------GVSNTVAAGKDVYNFLELF 126
Query: 208 FERFPQYKNR--DFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAWID 261
F++FP+Y N+ DF I GESYAGHY+P A ILS NL + IGN D
Sbjct: 127 FDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN--FNLTSVLIGNGLTD 180
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 101/176 (57%), Gaps = 16/176 (9%)
Query: 91 QYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAMEELGPFRVNS 150
QY GYL V+ + + F++ ES + P++LWLNGGPGCSSL G LGP +
Sbjct: 16 QYTGYLDVEDE-DKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIGP 73
Query: 151 DGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNT---AEDSYTFLVNW 207
D K + N Y+WN+ A V+FL+ P VGFSYS +S G +NT +D Y FL +
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSS------GVSNTVAAGKDVYNFLELF 126
Query: 208 FERFPQYKNR--DFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAWID 261
F++FP+Y N+ DF I G SYAGHY+P A ILS NL + IGN D
Sbjct: 127 FDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN--FNLTSVLIGNGLTD 180
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 107/192 (55%), Gaps = 23/192 (11%)
Query: 92 YAGYLTV-----DPKAGRALFYYFVESPQSSSS----KPLVLWLNGGPGCSSLGYGAMEE 142
+AG++ + D + L Y+F + + S+ +PL++WLNGGPGCSS+ GA+ E
Sbjct: 30 HAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GALVE 88
Query: 143 LGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNTAEDS-- 200
GPFRVNSDGK LY NE +W + ++LF++ P G GFS + D N ED
Sbjct: 89 SGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVEQ-NKDEGKIDKNKFDEDLED 146
Query: 201 -----YTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTI----INLK 251
FL N+F+ FP+ R ++GESYAG Y+P A IL+ N I +LK
Sbjct: 147 VTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLK 206
Query: 252 GIAIGNAWIDDN 263
+ IGN WID N
Sbjct: 207 ALLIGNGWIDPN 218
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 254 AIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATGQLSTSCDQYQTQGVREY 313
A+ N WI N +G F ++ N+AI +Y A Q +TS QT V+
Sbjct: 253 AVNNYWIRAN-PNQGNVGF-------TNGINSAILRYSGAAATQPTTS----QTSSVQPL 300
Query: 314 GQIDLYNVYAPLCKSSAPPPPTAGVVSVSIN 344
Q +L+ PL ++ P P AG V+++IN
Sbjct: 301 DQTNLH----PLTATAVPGSPVAGGVNLAIN 327
>pdb|1C93|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130nE132Q DOUBLE
Mutant
Length = 265
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDF-DQYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDF DQYA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFNDQYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1C90|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
pdb|1C90|B Chain B, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
Length = 265
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDFD-QYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDFD QYA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFDDQYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1C3F|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130n Mutant
Length = 265
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDF-DQYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDF D+YA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFNDEYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1C8Y|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130a Mutant
Length = 265
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDF-DQYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDF D+YA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFADEYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1C8X|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130e Mutant
Length = 265
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDF-DQYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDF D+YA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFEDEYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1EDT|A Chain A, Crystal Structure Of Endo-Beta-N-Acetylglucosaminidase H
At 1.9 Angstroms Resolution: Active Site Geometry And
Substrate Recognition
Length = 271
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDFD-QYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDFD +YA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 125 DGVDFDDEYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 182
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 183 DVSDKF------------DYAWN 193
>pdb|1C92|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132a Mutant
Length = 265
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 85 EGVDFD----QYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDFD +Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFDDAYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1C91|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132d
Length = 265
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 85 EGVDFD----QYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDFD +Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFDDDYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,989,227
Number of Sequences: 62578
Number of extensions: 491082
Number of successful extensions: 1231
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 30
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)