BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>018615
MPAGVLTKLNPTVCSGFNRVCNPKSSVLRRGKVLFANSGSSEFLPYPIRLLSETMDFSLS
SSCKRSSIPSSGTKAVGGDVLIDDLVSNCGNGLEFAKSSGVYFNDRSQSRCHKARMSSRK
RESPSGGLVSGYFIFDSVGRSSKSNVLGGGLCLKNIHTSSSMCFSAGSAHDLSFDGGSRN
ELIGSVASEQTILGERALKLLSGSCYLPHPAKEETGGEDAHFICGDEQVIGVADGVGGWA
DVGVDAGEFARELMSHSFRAVQEESTHAIDPARVLEKAHSSTKAKGSSTACIIALTSKVF
CFYISLASHAHYFQSSTVMTKYFWLLLPRKHISNFFPTFFKLNKLLLTEILGK

High Scoring Gene Products

Symbol, full name Information P value
AT5G66720 protein from Arabidopsis thaliana 2.9e-44
AT4G16580 protein from Arabidopsis thaliana 4.1e-33
DDB_G0280067
protein phosphatase 2C-related protein
gene from Dictyostelium discoideum 1.7e-08
PBCP
PHOTOSYSTEM II CORE PHOSPHATASE
protein from Arabidopsis thaliana 8.6e-06
AT4G33500 protein from Arabidopsis thaliana 0.00081

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  018615
        (353 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2173679 - symbol:AT5G66720 species:3702 "Arabi...   429  2.9e-44   2
TAIR|locus:2130834 - symbol:AT4G16580 species:3702 "Arabi...   361  4.1e-33   1
DICTYBASE|DDB_G0280067 - symbol:DDB_G0280067 "protein pho...   157  1.7e-08   1
TAIR|locus:2060822 - symbol:PBCP "PHOTOSYSTEM II CORE PHO...   129  8.6e-06   1
TAIR|locus:2119246 - symbol:AT4G33500 species:3702 "Arabi...   117  0.00081   1


>TAIR|locus:2173679 [details] [associations]
            symbol:AT5G66720 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            InterPro:IPR001932 PROSITE:PS01032 SMART:SM00331 SMART:SM00332
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0046872
            GO:GO:0008152 GO:GO:0004721 EMBL:AB018119 eggNOG:COG0631
            Gene3D:3.60.40.10 SUPFAM:SSF81606 HOGENOM:HOG000239282
            EMBL:AK117127 EMBL:AY136405 EMBL:BT000228 EMBL:BX833253
            IPI:IPI00527504 IPI:IPI00542549 RefSeq:NP_201473.1
            RefSeq:NP_975004.1 UniGene:At.28853 ProteinModelPortal:Q9LVQ8
            IntAct:Q9LVQ8 PaxDb:Q9LVQ8 PRIDE:Q9LVQ8 EnsemblPlants:AT5G66720.1
            GeneID:836805 KEGG:ath:AT5G66720 TAIR:At5g66720 InParanoid:Q9LVQ8
            OMA:TVFQSPV PhylomeDB:Q9LVQ8 ProtClustDB:CLSN2686876
            Genevestigator:Q9LVQ8 Uniprot:Q9LVQ8
        Length = 414

 Score = 429 (156.1 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 110/232 (47%), Positives = 132/232 (56%)

Query:    72 GTKAVGGDVLIDDLVSNCGNGLEFAK--SSGVYFNDRSQSRCHKARMSSRKRESP-SGGL 128
             G+  V GD  +DDLV+ C NGL+F K  SSG  F       C  A M   KR       L
Sbjct:    52 GSLPVFGDACLDDLVTTCSNGLDFTKKRSSGGSFT----INCPVASMRLGKRGGMMKNRL 107

Query:   129 VSGYFIFDSVGRSSKSNVLGGGLCLKNIHTSSSMCFSAGSAHDLS-FDGGSRNELIGSVA 187
             V  Y + D +    KS  L G L  K++HTS   CFS G AH+LS  +GGS+     S  
Sbjct:   108 VCHYSVVDPL---EKSRALFGTLS-KSVHTSPMACFSVGPAHELSSLNGGSQE----SPP 159

Query:   188 SEQTILGERALKLLSGSCYLPHPAKEETGGEDAHFICGDEQVIXXXXXXXXXXXXXXXXX 247
             +  T L  ++L+L+SGSCYLPHP KE TGGEDAHFIC +EQ I                 
Sbjct:   160 TTTTSL--KSLRLVSGSCYLPHPEKEATGGEDAHFICDEEQAIGVADGVGGWAEVGVNAG 217

Query:   248 EFARELMSHSFRAVQEEST-HAIDPARVLEKAHSSTKAKGSSTACIIALTSK 298
              F+RELMS+S  A+QE+    +IDP  VLEKAHS TKAKGSSTACII L  K
Sbjct:   218 LFSRELMSYSVSAIQEQHKGSSIDPLVVLEKAHSQTKAKGSSTACIIVLKDK 269

 Score = 54 (24.1 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query:     1 MPAGVLTKLNPTVCSGFNRVCNPKSSVLRRGKVLFANSG 39
             M A  L++LNP    GF R+   KS      K  F+NSG
Sbjct:     1 MSATALSRLNPVSQFGFQRIVAGKS------KSFFSNSG 33


>TAIR|locus:2130834 [details] [associations]
            symbol:AT4G16580 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=ISM] InterPro:IPR001932 Pfam:PF07228
            PROSITE:PS01032 SMART:SM00331 SMART:SM00332 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0008152 GO:GO:0004721
            EMBL:Z97341 EMBL:AL161544 eggNOG:COG0631 Gene3D:3.60.40.10
            SUPFAM:SSF81606 EMBL:AK117940 EMBL:BT005292 IPI:IPI00546963
            PIR:E85184 RefSeq:NP_193391.3 UniGene:At.33067 UniGene:At.70773
            ProteinModelPortal:Q9SUK9 PaxDb:Q9SUK9 PRIDE:Q9SUK9
            EnsemblPlants:AT4G16580.1 GeneID:827359 KEGG:ath:AT4G16580
            TAIR:At4g16580 HOGENOM:HOG000239282 InParanoid:Q9SUK9 OMA:VHAVRAN
            PhylomeDB:Q9SUK9 ProtClustDB:CLSN2918586 Genevestigator:Q9SUK9
            Uniprot:Q9SUK9
        Length = 467

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 82/190 (43%), Positives = 111/190 (58%)

Query:   112 HKARMSSRKR--ESPSGGLVSGYFIFDSVGRSSKSNVLGGGLCLKNIHTSSSMCFSAGSA 169
             ++ R+S R R  +      +  YF +    R    N    G+  + +H+S S   SAG+A
Sbjct:   127 NRGRISMRLRGKDHNEKSTICAYFAYRGAKRWIYLNQQRRGMGFRGLHSSLSNRLSAGNA 186

Query:   170 HDLSFDGGSRNELI-GSVASEQTILGERALKLLSGSCYLPHPAKEETGGEDAHFICGDEQ 228
              D+S D    +E +  S  S    L  + LKL+SGSCYLPHP KE TGGEDAHFIC +EQ
Sbjct:   187 PDVSLDNSVTDEQVRDSSDSVAAKLCTKPLKLVSGSCYLPHPDKEATGGEDAHFICAEEQ 246

Query:   229 VIXXXXXXXXXXXXXXXXXEFARELMSHSFRAVQEESTHAIDPARVLEKAHSSTKAKGSS 288
              +                  ++RELMS+S  A+Q+E   +IDPARVLEKAH+ TK++GSS
Sbjct:   247 ALGVADGVGGWAELGIDAGYYSRELMSNSVNAIQDEPKGSIDPARVLEKAHTCTKSQGSS 306

Query:   289 TACIIALTSK 298
             TACIIALT++
Sbjct:   307 TACIIALTNQ 316


>DICTYBASE|DDB_G0280067 [details] [associations]
            symbol:DDB_G0280067 "protein phosphatase 2C-related
            protein" species:44689 "Dictyostelium discoideum" [GO:0008152
            "metabolic process" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001932
            Pfam:PF07228 SMART:SM00331 SMART:SM00332 dictyBase:DDB_G0280067
            GO:GO:0003824 GO:GO:0008152 EMBL:AAFI02000035 eggNOG:COG0631
            Gene3D:3.60.40.10 SUPFAM:SSF81606 RefSeq:XP_641223.1
            ProteinModelPortal:Q54VY2 EnsemblProtists:DDB0233522 GeneID:8622354
            KEGG:ddi:DDB_G0280067 InParanoid:Q54VY2 OMA:PSEYSNT
            ProtClustDB:CLSZ2846802 Uniprot:Q54VY2
        Length = 516

 Score = 157 (60.3 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 39/116 (33%), Positives = 55/116 (47%)

Query:   183 IGSVASEQTILGERALKLLSGSCYLPHPAKEETGGEDAHFICGDEQVIXXXXXXXXXXXX 242
             I +  SE+ I GE    L SG C +PHP K   GGEDA+FI  D+ VI            
Sbjct:   242 INNYNSEECIGGEGNFHLNSGVCVIPHPNKRHKGGEDAYFISIDQNVIGVADGVGGWGDV 301

Query:   243 XXXXXEFARELMSHSFRAVQEESTHAIDPARVLEKAHSSTK-AKGSSTACIIALTS 297
                  E++  LM  S      +     DP  ++E+ +   +  KGSST CI+ L++
Sbjct:   302 GIDPSEYSNTLMKGSKIGADSQKVER-DPLIIMEQGYQYAQDVKGSSTCCIVVLSA 356


>TAIR|locus:2060822 [details] [associations]
            symbol:PBCP "PHOTOSYSTEM II CORE PHOSPHATASE"
            species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
            activity" evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0009657 "plastid organization"
            evidence=RCA] [GO:0010155 "regulation of proton transport"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0046777 "protein autophosphorylation" evidence=RCA] [GO:0010027
            "thylakoid membrane organization" evidence=IMP] [GO:0035970
            "peptidyl-threonine dephosphorylation" evidence=IDA] [GO:0071482
            "cellular response to light stimulus" evidence=IMP]
            InterPro:IPR001932 PROSITE:PS01032 SMART:SM00331 SMART:SM00332
            GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
            GO:GO:0010027 GO:GO:0004721 eggNOG:COG0631 Gene3D:3.60.40.10
            SUPFAM:SSF81606 EMBL:AC004165 GO:GO:0071482 GO:GO:0035970
            EMBL:AF370298 EMBL:AY063046 IPI:IPI00529715 IPI:IPI00846129
            PIR:T00581 RefSeq:NP_001077980.1 RefSeq:NP_565696.1
            UniGene:At.19566 ProteinModelPortal:O64730 SMR:O64730 STRING:O64730
            PaxDb:O64730 PRIDE:O64730 EnsemblPlants:AT2G30170.1 GeneID:817569
            KEGG:ath:AT2G30170 TAIR:At2g30170 HOGENOM:HOG000237527
            InParanoid:Q94K51 OMA:QEHYFDC PhylomeDB:O64730
            ProtClustDB:CLSN2688568 Genevestigator:O64730 Uniprot:O64730
        Length = 298

 Score = 129 (50.5 bits), Expect = 8.6e-06, P = 8.6e-06
 Identities = 33/103 (32%), Positives = 54/103 (52%)

Query:   198 LKLLSGSCYLPHPAKEETGGEDAHFICGDEQ-VIXXXXXXXXXXXXXXXXXEFARELMSH 256
             L L  G   +PHP K E GGEDA F+      V+                  F++ELM++
Sbjct:    45 LSLSVGIHAIPHPDKVEKGGEDAFFVSSYRGGVMAVADGVSGWAEQDVDPSLFSKELMAN 104

Query:   257 SFRAVQEESTHAIDPARVLEKAHSSTKAKGSSTACIIALTSKV 299
             + R V ++     DP  +++KAH++T ++GS+T  I+A+  +V
Sbjct:   105 ASRLVDDQEVR-YDPGFLIDKAHTATTSRGSATI-ILAMLEEV 145


>TAIR|locus:2119246 [details] [associations]
            symbol:AT4G33500 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0004722 "protein
            serine/threonine phosphatase activity" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0000023 "maltose metabolic
            process" evidence=RCA] [GO:0009637 "response to blue light"
            evidence=RCA] [GO:0010155 "regulation of proton transport"
            evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0043085 "positive regulation of catalytic
            activity" evidence=RCA] [GO:0046777 "protein autophosphorylation"
            evidence=RCA] InterPro:IPR001932 Pfam:PF07228 PROSITE:PS01032
            SMART:SM00331 SMART:SM00332 GO:GO:0009507 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0046872 EMBL:AL035678 EMBL:AL161583
            GO:GO:0004721 eggNOG:COG0631 Gene3D:3.60.40.10 SUPFAM:SSF81606
            EMBL:AY035047 EMBL:AY051052 IPI:IPI00523794 PIR:T06001
            RefSeq:NP_567923.1 UniGene:At.382 ProteinModelPortal:Q93V88
            STRING:Q93V88 PaxDb:Q93V88 PRIDE:Q93V88 EnsemblPlants:AT4G33500.1
            GeneID:829488 KEGG:ath:AT4G33500 TAIR:At4g33500
            HOGENOM:HOG000115318 InParanoid:Q93V88 OMA:IAQKPVI PhylomeDB:Q93V88
            ProtClustDB:CLSN2722376 Genevestigator:Q93V88 Uniprot:Q93V88
        Length = 724

 Score = 117 (46.2 bits), Expect = 0.00081, P = 0.00081
 Identities = 36/109 (33%), Positives = 50/109 (45%)

Query:   187 ASEQTILGERALKLLSGSCYLPHPAKEETGGEDAHFICGDEQVIXXXXXXXXXXXXXXXX 246
             AS +  L  +A  L SG   L  P K   G EDA+FI      I                
Sbjct:   468 ASGREELVSKAFYLDSGFASLQSPFKALAGREDAYFI-SHHNWIGIADGVSQWSFEGINK 526

Query:   247 XEFARELMSHSFRAVQEESTHAIDPARVLEKAHSSTKAKGSSTACIIAL 295
               +A+ELMS+  + +  E+    DP +VL ++ + TK+ GSSTA I  L
Sbjct:   527 GMYAQELMSNCEKIISNETAKISDPVQVLHRSVNETKSSGSSTALIAHL 575


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      353       322   0.00085  116 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  203 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.45u 0.08s 22.53t   Elapsed:  00:00:02
  Total cpu time:  22.45u 0.08s 22.53t   Elapsed:  00:00:02
  Start:  Mon May 20 21:55:41 2013   End:  Mon May 20 21:55:43 2013

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