Query 018615
Match_columns 353
No_of_seqs 164 out of 402
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 02:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1379 Serine/threonine prote 100.0 5.5E-43 1.2E-47 338.0 10.2 136 196-331 70-225 (330)
2 cd00143 PP2Cc Serine/threonine 98.7 2.9E-08 6.3E-13 88.0 6.8 98 214-314 12-127 (254)
3 COG0631 PTC1 Serine/threonine 98.6 1.4E-07 3.1E-12 89.1 8.9 139 204-352 10-178 (262)
4 smart00332 PP2Cc Serine/threon 98.3 5.5E-06 1.2E-10 74.2 11.0 101 208-313 11-129 (255)
5 PF13672 PP2C_2: Protein phosp 98.2 8.1E-06 1.7E-10 72.2 8.3 95 213-311 8-122 (212)
6 PLN03145 Protein phosphatase 2 98.0 1.8E-05 3.9E-10 78.9 9.1 92 214-313 76-193 (365)
7 PF00481 PP2C: Protein phospha 97.8 6.4E-05 1.4E-09 69.4 6.8 92 216-313 13-126 (254)
8 smart00331 PP2C_SIG Sigma fact 97.6 0.00031 6.8E-09 61.3 9.0 91 215-313 15-114 (193)
9 PTZ00224 protein phosphatase 2 97.5 0.0007 1.5E-08 68.2 10.6 87 216-312 35-131 (381)
10 PRK14559 putative protein seri 97.4 0.001 2.3E-08 71.2 11.4 102 205-311 378-509 (645)
11 KOG0698 Serine/threonine prote 97.3 0.0011 2.4E-08 64.8 9.6 88 228-325 76-178 (330)
12 PF07228 SpoIIE: Stage II spor 97.1 0.0044 9.5E-08 53.7 9.3 78 228-313 5-89 (193)
13 KOG0700 Protein phosphatase 2C 96.2 0.017 3.7E-07 59.0 7.8 44 269-312 167-227 (390)
14 TIGR02865 spore_II_E stage II 93.1 0.44 9.6E-06 52.2 9.2 105 195-309 547-660 (764)
15 KOG0697 Protein phosphatase 1B 74.2 20 0.00044 36.3 8.9 40 271-310 108-149 (379)
16 KOG1323 Serine/threonine phosp 60.8 7.2 0.00016 40.3 2.9 65 274-338 223-311 (493)
17 PRK10693 response regulator of 50.9 1.2E+02 0.0026 29.2 9.3 84 222-306 158-247 (303)
18 KOG0699 Serine/threonine prote 50.5 14 0.0003 38.7 2.9 30 283-312 327-356 (542)
19 COG2208 RsbU Serine phosphatas 45.7 1.2E+02 0.0026 30.0 8.6 97 200-306 149-253 (367)
20 PF07177 Neuralized: Neuralize 39.3 28 0.00062 27.3 2.6 39 98-136 29-68 (69)
21 smart00588 NEUZ domain in neur 20.5 1.1E+02 0.0025 26.3 3.3 41 98-138 30-71 (123)
No 1
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-43 Score=338.03 Aligned_cols=136 Identities=41% Similarity=0.535 Sum_probs=125.6
Q ss_pred cceEEEEeeeeccCCCCCCCCCCceEEEec--CCeeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCCCHHH
Q 018615 196 RALKLLSGSCYLPHPAKEETGGEDAHFICG--DEQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAIDPAR 273 (353)
Q Consensus 196 ~~L~L~sGs~~iPhp~K~~~gGEDA~FIs~--~~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~idP~~ 273 (353)
..+....+-+..||+.|..++|||||||+. ++.++|||||||||+++||||+.|||+||++|.++++++.+...+|..
T Consensus 70 t~~~~~~~~~~~~~~~~~~~~GEDa~Fvss~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~ 149 (330)
T KOG1379|consen 70 TSLCGFSKDFIRPHPSKVGKGGEDAWFVSSNPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVN 149 (330)
T ss_pred hhhccccccccCCccccCCCCCCcceeeccCcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHH
Confidence 566778888999999999999999999998 578999999999999999999999999999999999988888889999
Q ss_pred HHHHHHhCCC-----CCCCceEEEEEEe--cCceEEEEeeccCcee-----------eccCCCCCchhhccCChhH
Q 018615 274 VLEKAHSSTK-----AKGSSTACIIALT--SKVFCFYISLASHAHY-----------FQSSTVMTKYFWLLLPRKH 331 (353)
Q Consensus 274 LL~~Ay~~t~-----~~GSSTACVa~L~--~~gL~vaNlGDS~~~~-----------fQtH~FNTPyQLs~iP~~~ 331 (353)
||++||.+++ +.|||||||+.|+ +.+|+++|||||++.+ +|+|+|||||||++.|+++
T Consensus 150 lL~~ay~~l~~~~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~ 225 (330)
T KOG1379|consen 150 LLEKAYAELKSQKVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGY 225 (330)
T ss_pred HHHHHHHHHhhcCCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceeeccCCccc
Confidence 9999998764 4599999999999 6789999999999876 3999999999999999866
No 2
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=98.71 E-value=2.9e-08 Score=88.05 Aligned_cols=98 Identities=22% Similarity=0.218 Sum_probs=63.1
Q ss_pred CCCCCceEEEecC-----CeeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCC------
Q 018615 214 ETGGEDAHFICGD-----EQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAIDPARVLEKAHSST------ 282 (353)
Q Consensus 214 ~~gGEDA~FIs~~-----~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~idP~~LL~~Ay~~t------ 282 (353)
....||++++... ...++||||||||....+.+..+.+.|......... ....++.+.|+++++..
T Consensus 12 r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~l~~ 88 (254)
T cd00143 12 RKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT---LSEEDIEEALRKAFLRADEEILE 88 (254)
T ss_pred CCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999873 368999999999955444444444444433221110 00123334444443211
Q ss_pred -------CCCCCceEEEEEEecCceEEEEeeccCceeec
Q 018615 283 -------KAKGSSTACIIALTSKVFCFYISLASHAHYFQ 314 (353)
Q Consensus 283 -------~~~GSSTACVa~L~~~gL~vaNlGDS~~~~fQ 314 (353)
...++||++++.+.++.+.++|+||+...+++
T Consensus 89 ~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~ 127 (254)
T cd00143 89 EAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCR 127 (254)
T ss_pred hhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEc
Confidence 25688999999999999999999999876653
No 3
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=98.61 E-value=1.4e-07 Score=89.05 Aligned_cols=139 Identities=19% Similarity=0.172 Sum_probs=87.5
Q ss_pred eeeccCCCCCCCCCCceEEEecCCe-----eEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCCC--HHHHHH
Q 018615 204 SCYLPHPAKEETGGEDAHFICGDEQ-----VIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAID--PARVLE 276 (353)
Q Consensus 204 s~~iPhp~K~~~gGEDA~FIs~~~~-----aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~id--P~~LL~ 276 (353)
...++++.......||+|++..+.. .++||||+|||+...+.+....+.|.+...+ ......+ ..+.|.
T Consensus 10 ~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~----~~~~~~~~~~~~~l~ 85 (262)
T COG0631 10 VAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDE----TNFNSLNESLEELLK 85 (262)
T ss_pred eeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHh----ccccccchhHHHHHH
Confidence 4457777777778999999986433 8999999999998888776666666665432 1111222 223332
Q ss_pred HH------------HhCCC-CCCCceEEEEEEecCceEEEEeeccCceee------c---cCC-CCCchhhccCChhHHh
Q 018615 277 KA------------HSSTK-AKGSSTACIIALTSKVFCFYISLASHAHYF------Q---SST-VMTKYFWLLLPRKHIS 333 (353)
Q Consensus 277 ~A------------y~~t~-~~GSSTACVa~L~~~gL~vaNlGDS~~~~f------Q---tH~-FNTPyQLs~iP~~~~~ 333 (353)
++ ..+.. ...++|..++.+.++.+.++|+|||-.-.+ | .|. .|...+.++++++...
T Consensus 86 ~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~ 165 (262)
T COG0631 86 EAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEAR 165 (262)
T ss_pred HHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHH
Confidence 22 21223 334555555677778899999999975443 2 243 3566778888887765
Q ss_pred hhhhhHHhhhhHHHHHHhC
Q 018615 334 NFFPTFFKLNKLLLTEILG 352 (353)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~ 352 (353)
.. |... .||..||
T Consensus 166 ~~-~~~~-----~ltralG 178 (262)
T COG0631 166 SH-PRRN-----ALTRALG 178 (262)
T ss_pred hC-ccch-----hhhhhcC
Confidence 54 3322 5566655
No 4
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=98.32 E-value=5.5e-06 Score=74.21 Aligned_cols=101 Identities=25% Similarity=0.232 Sum_probs=67.5
Q ss_pred cCCCCCCCCCCceEEEecC----CeeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHhCC
Q 018615 208 PHPAKEETGGEDAHFICGD----EQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEE-STHAIDPARVLEKAHSST 282 (353)
Q Consensus 208 Php~K~~~gGEDA~FIs~~----~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee-~~~~idP~~LL~~Ay~~t 282 (353)
.+.......+||+|++... ...++||||+| |-..+.|+.+.|.......... .....++.++|++++...
T Consensus 11 ~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~g-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (255)
T smart00332 11 SSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHG-----GSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKT 85 (255)
T ss_pred ecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCC-----cHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHH
Confidence 3444566788999999863 34899999998 4555666665555433222111 111135777777766433
Q ss_pred -------------CCCCCceEEEEEEecCceEEEEeeccCceee
Q 018615 283 -------------KAKGSSTACIIALTSKVFCFYISLASHAHYF 313 (353)
Q Consensus 283 -------------~~~GSSTACVa~L~~~gL~vaNlGDS~~~~f 313 (353)
...++||++++.+.++.+.++|+||+..-++
T Consensus 86 ~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~ 129 (255)
T smart00332 86 DEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLC 129 (255)
T ss_pred HHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEE
Confidence 1357999999999999999999999986544
No 5
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=98.16 E-value=8.1e-06 Score=72.24 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=55.5
Q ss_pred CCCCCCceEEEecC--CeeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCC-C-H----HHHHHHHH-----
Q 018615 213 EETGGEDAHFICGD--EQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAI-D-P----ARVLEKAH----- 279 (353)
Q Consensus 213 ~~~gGEDA~FIs~~--~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~i-d-P----~~LL~~Ay----- 279 (353)
.....||+|++... ...+.|||||||+...+ .-|+.+++.+.+.+.+...... + . +.+.++.+
T Consensus 8 ~~~~nqD~~~~~~~~~~~~~aVaDG~g~~~~~~----~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (212)
T PF13672_consen 8 RGAPNQDAFGIRTDDDGNLAAVADGVGGSPYGE----EAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIVRA 83 (212)
T ss_dssp TSSS--EEEEEE-TCCTCEEEEEEEESTTTHHH----HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCCCCEEeeeCCCCEEEEEEECCCCCchhH----HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhh
Confidence 34567999997643 45789999999987443 3355555555555543322111 1 1 22332322
Q ss_pred -------hCCCCCCCceEEEEEEecCceEEEEeeccCce
Q 018615 280 -------SSTKAKGSSTACIIALTSKVFCFYISLASHAH 311 (353)
Q Consensus 280 -------~~t~~~GSSTACVa~L~~~gL~vaNlGDS~~~ 311 (353)
.......+||++++.+.++.+.++++||+...
T Consensus 84 ~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~ 122 (212)
T PF13672_consen 84 FQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIY 122 (212)
T ss_dssp --HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEE
T ss_pred hhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEE
Confidence 12245678999999999999999999999863
No 6
>PLN03145 Protein phosphatase 2c; Provisional
Probab=98.04 E-value=1.8e-05 Score=78.94 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=61.4
Q ss_pred CCCCCceEEEecC--------------CeeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 018615 214 ETGGEDAHFICGD--------------EQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAIDPARVLEKAH 279 (353)
Q Consensus 214 ~~gGEDA~FIs~~--------------~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~idP~~LL~~Ay 279 (353)
...-||+|++..+ ...+||+||.|| ...++|+...+... +.++.....+..+.|.+|+
T Consensus 76 R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG-----~~age~as~~l~~~---i~~~~~~~~~~~~al~~af 147 (365)
T PLN03145 76 RSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGG-----KHAADFACYHLPRF---IVEDEDFPREIEKVVSSAF 147 (365)
T ss_pred CCCCCCceEecccccccccccccCCCCceEEEEEeCCCC-----HHHHHHHHHHHHHH---HHhhhccchhHHHHHHHHH
Confidence 3456999987542 246999999995 55678876644432 2222111224456666665
Q ss_pred hCC------------CCCCCceEEEEEEecCceEEEEeeccCceee
Q 018615 280 SST------------KAKGSSTACIIALTSKVFCFYISLASHAHYF 313 (353)
Q Consensus 280 ~~t------------~~~GSSTACVa~L~~~gL~vaNlGDS~~~~f 313 (353)
.++ ....+||++++.+.++.+.++|+|||-.-.+
T Consensus 148 ~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~ 193 (365)
T PLN03145 148 LQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLC 193 (365)
T ss_pred HHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEE
Confidence 432 1347899999999999999999999976544
No 7
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=97.76 E-value=6.4e-05 Score=69.37 Aligned_cols=92 Identities=24% Similarity=0.268 Sum_probs=62.5
Q ss_pred CCCceEEEecC---------CeeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhC-----
Q 018615 216 GGEDAHFICGD---------EQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAIDPARVLEKAHSS----- 281 (353)
Q Consensus 216 gGEDA~FIs~~---------~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~idP~~LL~~Ay~~----- 281 (353)
.-||.+++..+ ...+||+||.||. ..+.|....+............ .-++.+.|..+|.+
T Consensus 13 ~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~-----~~a~~~~~~l~~~l~~~~~~~~-~~~~~~al~~a~~~~~~~~ 86 (254)
T PF00481_consen 13 EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGS-----EAAEYASQNLPEFLKENLSFND-GNDIEEALRQAFLAFTDES 86 (254)
T ss_dssp SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSS-----HHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred cccCEEEEecCccccCCCCCcEEEEEecCCCCh-----hhHHHHHHHHHHHHHhhccccc-ccchhhcccceeeeccccc
Confidence 34888887651 2479999999954 5577877766643322221111 11566666666655
Q ss_pred --------CCCCCCceEEEEEEecCceEEEEeeccCceee
Q 018615 282 --------TKAKGSSTACIIALTSKVFCFYISLASHAHYF 313 (353)
Q Consensus 282 --------t~~~GSSTACVa~L~~~gL~vaNlGDS~~~~f 313 (353)
.....+|||+++.+.++.|.++|+|||...+.
T Consensus 87 ~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~ 126 (254)
T PF00481_consen 87 LYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLC 126 (254)
T ss_dssp HHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEE
T ss_pred ccccccccccccccccccccccccceeEEEeeeeeeeeee
Confidence 23579999999999999999999999987654
No 8
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=97.63 E-value=0.00031 Score=61.28 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=65.2
Q ss_pred CCCCceEEEecC---CeeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCC----CCCCC
Q 018615 215 TGGEDAHFICGD---EQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAIDPARVLEKAHSST----KAKGS 287 (353)
Q Consensus 215 ~gGEDA~FIs~~---~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~idP~~LL~~Ay~~t----~~~GS 287 (353)
.-|.|.|.+... ...++||||+|+ |+.++.++..++....+.+.. ..+|.+++++..+.. ....+
T Consensus 15 ~~~GD~~~~~~~~~~~~~~~v~Dg~G~----G~~aa~~s~~~~~~~~~~~~~----~~~~~~~l~~~n~~l~~~~~~~~~ 86 (193)
T smart00331 15 QVGGDFYDVVKLPEGRLLIAIADVMGK----GLAAALAMSMARSALRTLLSE----GISLSQILERLNRAIYENGEDGMF 86 (193)
T ss_pred hcCccEEEEEEeCCCeEEEEEEecCCC----ChHHHHHHHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHhcCCCCcE
Confidence 357777766542 357999999998 899999999988887766543 246877776654332 33467
Q ss_pred ceEEEEEEe--cCceEEEEeeccCceee
Q 018615 288 STACIIALT--SKVFCFYISLASHAHYF 313 (353)
Q Consensus 288 STACVa~L~--~~gL~vaNlGDS~~~~f 313 (353)
+|++++.++ .+.++++|.||+..-++
T Consensus 87 ~T~~~~~id~~~~~l~~~~~Gd~~~~~~ 114 (193)
T smart00331 87 ATLFLALYDFAGGTLSYANAGHSPPYLL 114 (193)
T ss_pred EEEEEEEEECCCCEEEEEeCCCCceEEE
Confidence 888888874 55689999998775443
No 9
>PTZ00224 protein phosphatase 2C; Provisional
Probab=97.50 E-value=0.0007 Score=68.17 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=51.6
Q ss_pred CCCceEEEecC--CeeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHh-------CCCCCC
Q 018615 216 GGEDAHFICGD--EQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAIDPARVLEKAHS-------STKAKG 286 (353)
Q Consensus 216 gGEDA~FIs~~--~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~idP~~LL~~Ay~-------~t~~~G 286 (353)
.-||+|++... ...+||+||-||.. .+.|.. ++..+.+.+... ...+ +.|.+++. +....|
T Consensus 35 ~nED~~~v~~~~~~~lfgVfDGHgG~~-----~S~~~~---~~l~~~l~~~~~-~~~~-~~l~~a~~~~d~~i~~~~~~~ 104 (381)
T PTZ00224 35 SMEDAHLLYLTDDWGFFGVFDGHVNDE-----CSQYLA---RAWPQALEKEPE-PMTD-ERMEELCLEIDEEWMDSGREG 104 (381)
T ss_pred CCCCeeEeccCCCceEEEEEeCCCcHH-----HHHHHH---HHHHHHHHhccc-cccH-HHHHHHHHHHHHHHHhcccCC
Confidence 35999987432 25899999976542 244443 343344433221 1122 22444432 223457
Q ss_pred CceEEEEEEe-cCceEEEEeeccCcee
Q 018615 287 SSTACIIALT-SKVFCFYISLASHAHY 312 (353)
Q Consensus 287 SSTACVa~L~-~~gL~vaNlGDS~~~~ 312 (353)
+||++++.+. +..+.++|+|||-.-.
T Consensus 105 GsTatv~lI~~~~~l~vaNVGDSRayl 131 (381)
T PTZ00224 105 GSTGTFCVIMKDVHLQVGNVGDSRVLV 131 (381)
T ss_pred CCeEEEEEEEECCEEEEEEcccceEEE
Confidence 8899988776 4679999999997543
No 10
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=97.43 E-value=0.001 Score=71.21 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=60.2
Q ss_pred eeccCCCCCCCCCCceEEEecC--------------CeeEEeeecccccccCCCChHHHHHHH-HHHHHHHHHhccCCCC
Q 018615 205 CYLPHPAKEETGGEDAHFICGD--------------EQVIGVADGVGGWADVGVDAGEFAREL-MSHSFRAVQEESTHAI 269 (353)
Q Consensus 205 ~~iPhp~K~~~gGEDA~FIs~~--------------~~aiGVADGVGGWa~~GVDPglFSReL-M~~c~~~i~ee~~~~i 269 (353)
+..-|.-++.+.-||+|++... ...++||||+||=.. |+.+-.+ ++...+.+.+......
T Consensus 378 a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~-----GevAS~lAv~~L~~~~~~~~~~~~ 452 (645)
T PRK14559 378 AGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAA-----GEVASALAVETLQQYFQQHWQDEL 452 (645)
T ss_pred EEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchh-----HHHHHHHHHHHHHHHHHhhhcccc
Confidence 4455555556678999887531 247999999998543 3333222 2332333322211223
Q ss_pred CHHHHHHHHHhCC---------------CCCCCceEEEEEEecCceEEEEeeccCce
Q 018615 270 DPARVLEKAHSST---------------KAKGSSTACIIALTSKVFCFYISLASHAH 311 (353)
Q Consensus 270 dP~~LL~~Ay~~t---------------~~~GSSTACVa~L~~~gL~vaNlGDS~~~ 311 (353)
.+.+.|++++..+ ....+||++++.+.++.+.++|+|||-.-
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaY 509 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLY 509 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEE
Confidence 3444454443211 11358899999999999999999999643
No 11
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=97.34 E-value=0.0011 Score=64.80 Aligned_cols=88 Identities=23% Similarity=0.214 Sum_probs=62.3
Q ss_pred eeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCC---CCHHHHHHHHHh-CC----------CCCCCceEEEE
Q 018615 228 QVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHA---IDPARVLEKAHS-ST----------KAKGSSTACII 293 (353)
Q Consensus 228 ~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~---idP~~LL~~Ay~-~t----------~~~GSSTACVa 293 (353)
..+||.||=| |...+.|.++-+... +.++.... .+..+.+.++|. ++ ...++|||+++
T Consensus 76 ~ffgVfDGHG-----G~~~A~~~~~~L~~~---l~~~~~~~~~~~~~~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~ 147 (330)
T KOG0698|consen 76 AFFGVFDGHG-----GDLAAKFAAKHLHKN---LLEQLAFPKDRQDVKDALRRAFLTKTDSEFLEKREDNRSGGSTAVVA 147 (330)
T ss_pred EEEEEEeCCC-----CHHHHHHHHHHHHHH---HHhhhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCcceeeee
Confidence 4799999998 899999999544433 22222222 246788888888 34 15788888888
Q ss_pred EEecC-ceEEEEeeccCceeeccCCCCCchhhc
Q 018615 294 ALTSK-VFCFYISLASHAHYFQSSTVMTKYFWL 325 (353)
Q Consensus 294 ~L~~~-gL~vaNlGDS~~~~fQtH~FNTPyQLs 325 (353)
.+.++ .|.++|+|||-..+.+... ...||+
T Consensus 148 vi~~~~~l~vaN~GDSRaVl~~~~~--~a~~Ls 178 (330)
T KOG0698|consen 148 LIKKGRKLYVANVGDSRAVLSRKGG--VAVQLS 178 (330)
T ss_pred eEecCCEEEEEEcCCCcEEEecCCC--eeeeCC
Confidence 88865 8999999999988876532 445554
No 12
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=97.06 E-value=0.0044 Score=53.71 Aligned_cols=78 Identities=23% Similarity=0.286 Sum_probs=60.8
Q ss_pred eeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCC----CCC-CCceEEEEEEecC--ce
Q 018615 228 QVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAIDPARVLEKAHSST----KAK-GSSTACIIALTSK--VF 300 (353)
Q Consensus 228 ~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~idP~~LL~~Ay~~t----~~~-GSSTACVa~L~~~--gL 300 (353)
..+.|+|+.| +|+.++.++..+......++.+ ..+|.++|+...+.. ... ...|+|++.++.+ .+
T Consensus 5 ~~~~v~D~~G----hG~~aa~~~~~~~~~~~~~~~~----~~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~~~l 76 (193)
T PF07228_consen 5 YFIIVGDVSG----HGVSAALLSAALASAIRELLDE----GLDPEELLEALNRRLYRDLKGDNRYATACYAIIDPETGTL 76 (193)
T ss_dssp EEEEEEEESS----SSHHHHHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETTTTEE
T ss_pred EEEEEEEecC----CCHHHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhhhccccceEEEEEecccceEE
Confidence 4689999999 9999999999998888777753 456999998876554 444 6788999988854 38
Q ss_pred EEEEeeccCceee
Q 018615 301 CFYISLASHAHYF 313 (353)
Q Consensus 301 ~vaNlGDS~~~~f 313 (353)
.++|.|+....++
T Consensus 77 ~~~~aG~~~~l~~ 89 (193)
T PF07228_consen 77 TYANAGHPPPLLL 89 (193)
T ss_dssp EEEEESSSEEEEE
T ss_pred EEeCCCCCCEEEE
Confidence 8999987765544
No 13
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=96.15 E-value=0.017 Score=58.97 Aligned_cols=44 Identities=20% Similarity=-0.013 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHhCC-----------------CCCCCceEEEEEEecCceEEEEeeccCcee
Q 018615 269 IDPARVLEKAHSST-----------------KAKGSSTACIIALTSKVFCFYISLASHAHY 312 (353)
Q Consensus 269 idP~~LL~~Ay~~t-----------------~~~GSSTACVa~L~~~gL~vaNlGDS~~~~ 312 (353)
.+-.+.|.+|+++| .+.=+|+|||+.+.+..|+|+|+|||-...
T Consensus 167 ~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVL 227 (390)
T KOG0700|consen 167 GDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVL 227 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhh
Confidence 34457788888655 145677889999999999999999997544
No 14
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=93.08 E-value=0.44 Score=52.21 Aligned_cols=105 Identities=12% Similarity=0.101 Sum_probs=70.5
Q ss_pred ccceEEEEeeeeccCCCCCCCCCCceEEEec---CCeeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCCCH
Q 018615 195 ERALKLLSGSCYLPHPAKEETGGEDAHFICG---DEQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAIDP 271 (353)
Q Consensus 195 ~~~L~L~sGs~~iPhp~K~~~gGEDA~FIs~---~~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~idP 271 (353)
..++++..|+...+++.. .-|.|.|-+.. +...+.||||.| +|+.++..|...++...+.++. ..+|
T Consensus 547 ~~~~~~~~g~a~~~k~g~--~vsGD~y~~~~l~~g~~~~~laDGmG----hG~~Aa~~S~~~~~ll~~~~~~----g~~~ 616 (764)
T TIGR02865 547 TPKYHVSTGVARAAKDGE--LVSGDSYSFGKLSAGKYAVAISDGMG----SGPEAAQESSACVRLLEKFLES----GFDR 616 (764)
T ss_pred CCceeehhhHHHhcCCCC--cccCceEEEEEECCCEEEEEEEcccC----CCHHHHHHHHHHHHHHHHHHHc----CCCH
Confidence 356888888888887763 35788876543 235789999999 7999998888766665555432 4577
Q ss_pred HHHHHHHHhC----CCCCCCceEEEEEEec--CceEEEEeeccC
Q 018615 272 ARVLEKAHSS----TKAKGSSTACIIALTS--KVFCFYISLASH 309 (353)
Q Consensus 272 ~~LL~~Ay~~----t~~~GSSTACVa~L~~--~gL~vaNlGDS~ 309 (353)
.++++..-+. ....--+|+.++.+|. +.++++|.|+.-
T Consensus 617 ~~ai~~lN~~L~~~~~~~~faTl~l~~IDl~~g~~~~~~aG~~p 660 (764)
T TIGR02865 617 EVAIKTVNSILSLRSTDEKFSTLDLSVIDLYTGQAEFVKVGAVP 660 (764)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEEEEECCCCeEEEEecCCCc
Confidence 7777654321 1111137777777774 458888887654
No 15
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=74.17 E-value=20 Score=36.33 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCC--CCCCceEEEEEEecCceEEEEeeccCc
Q 018615 271 PARVLEKAHSSTK--AKGSSTACIIALTSKVFCFYISLASHA 310 (353)
Q Consensus 271 P~~LL~~Ay~~t~--~~GSSTACVa~L~~~gL~vaNlGDS~~ 310 (353)
.-+++..-++..+ -.|+|||+-+.+......++|.|||-.
T Consensus 108 iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRa 149 (379)
T KOG0697|consen 108 IDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRA 149 (379)
T ss_pred HHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchh
Confidence 3455555554443 359999999999999999999999864
No 16
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=60.79 E-value=7.2 Score=40.33 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=43.2
Q ss_pred HHHHHHhCC-----------CCCCCceEEEEEEecCceEEEEeeccCceeecc------CCCCCch-------hhccCCh
Q 018615 274 VLEKAHSST-----------KAKGSSTACIIALTSKVFCFYISLASHAHYFQS------STVMTKY-------FWLLLPR 329 (353)
Q Consensus 274 LL~~Ay~~t-----------~~~GSSTACVa~L~~~gL~vaNlGDS~~~~fQt------H~FNTPy-------QLs~iP~ 329 (353)
.|+.||.++ ...|++||+|+..--.+|.++|.||+-.++.+. +.--||- ||..+-|
T Consensus 223 AlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf~~P 302 (493)
T KOG1323|consen 223 ALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAFRNP 302 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhhcCh
Confidence 456676543 468999999988777889999999998765422 1111231 3666666
Q ss_pred hHHhhhhhh
Q 018615 330 KHISNFFPT 338 (353)
Q Consensus 330 ~~~~~~~~~ 338 (353)
+++.|-|-.
T Consensus 303 eLlgneFtr 311 (493)
T KOG1323|consen 303 ELLGNEFTR 311 (493)
T ss_pred Hhhcccccc
Confidence 777665543
No 17
>PRK10693 response regulator of RpoS; Provisional
Probab=50.92 E-value=1.2e+02 Score=29.19 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=50.2
Q ss_pred EEecCCeeEEeeecccccccCCCChHHHHHHHHHHHHHHHH-hccCCCCCHHHHHHHH---HhCCCCCCCceEEEEEEec
Q 018615 222 FICGDEQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQ-EESTHAIDPARVLEKA---HSSTKAKGSSTACIIALTS 297 (353)
Q Consensus 222 FIs~~~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~-ee~~~~idP~~LL~~A---y~~t~~~GSSTACVa~L~~ 297 (353)
.+.++...|-+|| |.|=-.+|+-++...+.|.....+... .......+|.++|+.- +.+....+--|++.+.+|.
T Consensus 158 ~l~~~~~~~~~~D-vsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~~~t~~~~~~d~ 236 (303)
T PRK10693 158 ALSDNDLAFYCLD-VTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHR 236 (303)
T ss_pred ecCCCcEEEEEEe-cCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCceeeEEEEEEEc
Confidence 3344456777888 555455677777777776554443321 1122235788887643 4444444457999999987
Q ss_pred Cc--eEEEEee
Q 018615 298 KV--FCFYISL 306 (353)
Q Consensus 298 ~g--L~vaNlG 306 (353)
.. +.++|-|
T Consensus 237 ~~~~l~~~~AG 247 (303)
T PRK10693 237 ELKNLILVSAG 247 (303)
T ss_pred CCCeEEEEeCC
Confidence 53 7777654
No 18
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=50.53 E-value=14 Score=38.75 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=25.6
Q ss_pred CCCCCceEEEEEEecCceEEEEeeccCcee
Q 018615 283 KAKGSSTACIIALTSKVFCFYISLASHAHY 312 (353)
Q Consensus 283 ~~~GSSTACVa~L~~~gL~vaNlGDS~~~~ 312 (353)
..-.++||||+.+.+..|.|+|.|||-+.+
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~ 356 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVL 356 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEE
Confidence 445689999999999999999999987644
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=45.66 E-value=1.2e+02 Score=30.01 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=55.7
Q ss_pred EEEeeeeccCCCCCCCCCC--ceEEEecCCeeEEeeecccccccCCCChHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Q 018615 200 LLSGSCYLPHPAKEETGGE--DAHFICGDEQVIGVADGVGGWADVGVDAGEFARELMSHSFRAVQEESTHAIDPARVLEK 277 (353)
Q Consensus 200 L~sGs~~iPhp~K~~~gGE--DA~FIs~~~~aiGVADGVGGWa~~GVDPglFSReLM~~c~~~i~ee~~~~idP~~LL~~ 277 (353)
+.-+++.+|... -||+ |.+........++|+|..| +||.++..+... ....+.+.. .+..+|.++|++
T Consensus 149 ~~i~~~~~~a~~---vGGD~yd~~~~~~~~~~i~I~DvsG----~Gv~aal~m~~~-~~~~~~~~~--~~~~~p~~~l~~ 218 (367)
T COG2208 149 IDIEAILVPASE---VGGDYYDFIQLGEKRLRIGIGDVSG----KGVPAALLMLMP-KLALRLLLE--SGPLDPADVLET 218 (367)
T ss_pred ccceeeEeEHHH---cCCceEEEEEECCcEEEEEEEeccC----CCHHHHHHHHHH-HHHHHHhhh--cccCCHHHHHHH
Confidence 444556666554 3343 3333332356799999886 788888873222 222233322 236899988865
Q ss_pred ---HHhCCC-CCCCceEEEEEEec--CceEEEEee
Q 018615 278 ---AHSSTK-AKGSSTACIIALTS--KVFCFYISL 306 (353)
Q Consensus 278 ---Ay~~t~-~~GSSTACVa~L~~--~gL~vaNlG 306 (353)
.+.... ..=..|.+.+.++- ..+.++|.|
T Consensus 219 ~n~~~~~~~~~~~f~T~~~~~~d~~~~~l~y~~aG 253 (367)
T COG2208 219 LNRVLKQNLEEDMFVTLFLGVYDLDSGELTYSNAG 253 (367)
T ss_pred HHHHHHhcccCCcEEEEEEEEEeccCCEEEEeeCC
Confidence 343332 23567888887775 346666654
No 20
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=39.29 E-value=28 Score=27.33 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=27.5
Q ss_pred Ccceeeccccccccceeeeee-ccCCCCCCCceeeEEEec
Q 018615 98 SSGVYFNDRSQSRCHKARMSS-RKRESPSGGLVSGYFIFD 136 (353)
Q Consensus 98 ~~~v~f~~r~~~~~~k~s~~l-r~~~~~~~~~~~g~~~~~ 136 (353)
+-++.|.+|.++.-++..|.+ +....|.+.+.+|....|
T Consensus 29 ~~giVFS~rPl~~~E~~~v~I~~~~~~wsG~L~~GvT~~~ 68 (69)
T PF07177_consen 29 NNGIVFSSRPLRIGEKFEVRIDEVEPSWSGSLRIGVTSCD 68 (69)
T ss_dssp SS-EEEESS-B-TT-EEEEEEEEE-SSSSS--EEEEESS-
T ss_pred CceEEEecCCccCCCEEEEEEEecCCCceeEEEEeeEccC
Confidence 557999999999999999999 677789999999998765
No 21
>smart00588 NEUZ domain in neuralized proteins.
Probab=20.51 E-value=1.1e+02 Score=26.35 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=35.7
Q ss_pred Ccceeeccccccccceeeeee-ccCCCCCCCceeeEEEeccC
Q 018615 98 SSGVYFNDRSQSRCHKARMSS-RKRESPSGGLVSGYFIFDSV 138 (353)
Q Consensus 98 ~~~v~f~~r~~~~~~k~s~~l-r~~~~~~~~~~~g~~~~~~~ 138 (353)
.-++.|.+|.++.-+++.+.+ +....|.+.+.+|....|-+
T Consensus 30 ~~givFS~rPl~~~E~~~v~i~~~~~~w~G~l~~G~Ts~dP~ 71 (123)
T smart00588 30 CNALVFSARPLRINELFEVKIEKVVRKWSGALRFGVTTCDPA 71 (123)
T ss_pred CceEEecCCCCcCCCEEEEEEEEecCCccCceEEEEecCCcc
Confidence 556899999999999999999 67788999999999887654
Done!