BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018616
         (353 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
            SV=1
          Length = 1860

 Score = 35.8 bits (81), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 128  QYHLMKYPVPQKVPLAPMQNGIHPMPVNNLPMGYPVLQQPPIPAAGQPHLESMSSGISSC 187
            QY L + P+  + P+ P  +   P   +  PMG   LQ P +     P    MS  +   
Sbjct: 1352 QYGLSRPPLRMQTPMHPQASSFPPSFYSGPPMGPRGLQSPVLEGGEDPMGAGMSEDLKG- 1410

Query: 188  HVVNGVPAPGNFHPMRMNSGNDMVMDT 214
             VV G+PA  +  P+R+NS  +  +D+
Sbjct: 1411 -VVRGLPAQMHQQPLRLNSFGEESLDS 1436


>sp|O42854|YFHH_SCHPO SH3 domain-containing protein C23A1.17 OS=Schizosaccharomyces pombe
            (strain 972 / ATCC 24843) GN=SPAC23A1.17 PE=1 SV=1
          Length = 1611

 Score = 33.1 bits (74), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 135  PVPQKVPLAPMQNGIHPMP---VNNLPMGYPVLQQPPIPA-AGQPHLESMSSGISSCHVV 190
            P P   P  P  +GI P+P   V   P+  P +  PP+PA +G P +   S       V 
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136

Query: 191  NG---VPAPG-NFHPMRMNSGNDMVMDTSAAEVAPVIP-PSSGV 229
            +G   VP P     P+   SG   V   S A  AP +P PSSG+
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVA--APPVPAPSSGI 1178


>sp|Q5RAX4|CDAC1_PONAB Cytidine and dCMP deaminase domain-containing protein 1 OS=Pongo
          abelii GN=CDADC1 PE=2 SV=1
          Length = 515

 Score = 32.7 bits (73), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 16 VSHESQSDQQNNQTTEAPLADSGSISASSNDSRKVSRQDIELVQNL 61
          V  + Q  Q+N +    PL D+  ++  S D R+V R  + +V+N+
Sbjct: 52 VEAQRQKSQKNEEGKHGPLGDNEEMTRVSTDKRQVKRTGLVVVKNM 97


>sp|Q4R683|CDAC1_MACFA Cytidine and dCMP deaminase domain-containing protein 1 OS=Macaca
          fascicularis GN=CDADC1 PE=2 SV=1
          Length = 515

 Score = 32.7 bits (73), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 16 VSHESQSDQQNNQTTEAPLADSGSISASSNDSRKVSRQDIELVQNL 61
          V  + Q  Q+N +    PL D+  ++  S D R+V R  + +V+N+
Sbjct: 52 VEAQRQKSQKNEEGKHGPLGDNEEMTRVSTDKRQVKRTGLVVVKNM 97


>sp|D4A929|WDR81_RAT WD repeat-containing protein 81 OS=Rattus norvegicus GN=Wdr81 PE=1
           SV=1
          Length = 1933

 Score = 32.0 bits (71), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 27/159 (16%)

Query: 123 HLLEHQYHLMKY--------PVPQKVPLAPMQNGIHPMPVNNLPMGYPVLQQPPIPAAGQ 174
           HL++   HL  Y        P PQ++  AP    + P P    P+   +L QP   A GQ
Sbjct: 563 HLVDAHTHLTSYGVVQLFDQPHPQRLAGAP---ALAPEP----PLIPRLLVQPIQEATGQ 615

Query: 175 PHLESMSSGISSCHVVNGVPAPGNFHPMRMNSGNDMVMDTSAAEVAPVIPPSSGVSSMSE 234
             +       +  HVV   P    +   R  +G D +   + A  +  IP  +G     +
Sbjct: 616 EDISGQLINGAGRHVVEVTPCESGWTRERPTAGEDDLEQATEALDSISIPGKAG-----D 670

Query: 235 MAMSPTSVASSGHFPFTASDMS-------GMGMDTGALD 266
              S +S AS G  PF+A   S         G+D+G  D
Sbjct: 671 QPGSSSSQASPGLLPFSAPSGSRPGRRSKATGLDSGEGD 709


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,517,344
Number of Sequences: 539616
Number of extensions: 5780472
Number of successful extensions: 14890
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 14645
Number of HSP's gapped (non-prelim): 338
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)