Query 018616
Match_columns 353
No_of_seqs 112 out of 124
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 03:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di0_A Activating signal coint 74.9 4.5 0.00015 31.6 4.9 37 52-89 14-59 (71)
2 1tpx_A Prion protein, major pr 65.7 4 0.00014 34.9 3.1 26 46-71 84-110 (121)
3 2e9x_A DNA replication complex 64.3 5.7 0.00019 33.7 3.8 47 62-110 72-119 (149)
4 2ozb_B U4/U6 small nuclear rib 55.3 6.5 0.00022 36.8 2.8 52 44-95 100-152 (260)
5 2es9_A Putative cytoplasmic pr 54.6 7.7 0.00026 32.5 2.8 42 74-116 55-105 (115)
6 3icx_A PRE mRNA splicing prote 51.0 8.3 0.00028 36.2 2.8 56 42-97 84-140 (255)
7 3hh0_A Transcriptional regulat 46.5 1.1E+02 0.0037 25.5 8.7 74 44-132 37-110 (146)
8 1b8z_A Protein (histonelike pr 45.0 17 0.00058 27.7 3.3 29 70-98 1-29 (90)
9 3doe_B ADP-ribosylation factor 43.8 16 0.00053 32.5 3.2 47 49-98 66-115 (165)
10 1mul_A NS2, HU-2, DNA binding 43.0 22 0.00074 27.2 3.6 28 70-97 1-28 (90)
11 4hw4_A Induced myeloid leukemi 38.0 62 0.0021 27.8 6.1 52 54-116 4-69 (157)
12 2q9q_C DNA replication complex 38.0 37 0.0013 29.8 4.8 49 61-111 71-120 (196)
13 3pla_A NOP5, PRE mRNA splicing 37.7 17 0.00059 36.0 2.8 56 42-97 217-273 (388)
14 2o97_B NS1, HU-1, DNA-binding 36.9 25 0.00087 26.9 3.1 27 70-96 1-27 (90)
15 2nnw_A NOP5/NOP56 related prot 36.7 16 0.00054 36.1 2.4 51 45-95 221-272 (376)
16 1owf_A IHF-alpha, integration 36.6 27 0.00092 27.3 3.3 29 70-98 3-31 (99)
17 3e98_A GAF domain of unknown f 36.2 9.1 0.00031 35.1 0.6 17 119-135 100-116 (252)
18 1p71_A DNA-binding protein HU; 36.1 25 0.00086 27.1 3.0 28 70-97 1-28 (94)
19 2zhg_A Redox-sensitive transcr 35.9 1.5E+02 0.0052 24.8 8.1 78 44-132 43-120 (154)
20 3c4i_A DNA-binding protein HU 35.7 25 0.00087 27.5 3.0 28 70-97 1-28 (99)
21 3gp4_A Transcriptional regulat 34.9 1.9E+02 0.0066 23.8 9.9 37 44-81 35-71 (142)
22 2iie_A Integration HOST factor 34.8 81 0.0028 28.0 6.5 50 48-97 17-74 (204)
23 1exe_A Transcription factor 1; 34.7 28 0.00096 27.3 3.1 30 70-99 1-30 (99)
24 4e2i_2 DNA polymerase alpha su 33.2 25 0.00087 27.8 2.6 29 50-79 17-45 (78)
25 2keb_A DNA polymerase subunit 31.2 38 0.0013 28.1 3.4 47 50-99 40-90 (101)
26 1q06_A Transcriptional regulat 30.0 2.2E+02 0.0076 23.1 10.3 78 44-133 33-110 (135)
27 3rhi_A DNA-binding protein HU; 29.3 26 0.0009 27.1 2.1 27 69-95 3-29 (93)
28 1owf_B IHF-beta, integration H 28.5 45 0.0015 25.6 3.3 27 70-96 1-28 (94)
29 3gpv_A Transcriptional regulat 25.3 2.9E+02 0.0098 22.8 9.4 36 44-80 49-84 (148)
30 1dx0_A Prion protein; brain, r 25.0 45 0.0015 31.0 3.1 25 47-71 184-209 (219)
31 2jml_A DNA binding domain/tran 24.4 88 0.003 23.0 4.2 37 45-82 40-77 (81)
32 1g2h_A Transcriptional regulat 22.6 95 0.0033 22.0 3.9 35 59-100 23-57 (61)
33 2qia_A UDP-N-acetylglucosamine 22.6 1.4E+02 0.0047 26.1 5.7 43 48-90 205-247 (262)
34 1gk6_A Vimentin; intermediate 21.7 1.9E+02 0.0066 21.0 5.4 34 93-126 19-52 (59)
35 3pkr_A FLIG, flagellar motor s 21.1 1.7E+02 0.0057 27.5 6.2 57 48-107 113-176 (279)
36 3hsq_A Acyl-[acyl-carrier-prot 21.1 78 0.0027 27.8 3.8 44 48-91 200-243 (259)
No 1
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=74.85 E-value=4.5 Score=31.59 Aligned_cols=37 Identities=30% Similarity=0.643 Sum_probs=31.1
Q ss_pred HHhHHHHHHH--------HHHHHHhh-cCHHHHHHHHHHhcCCCCcc
Q 018616 52 RQDIELVQNL--------IERCLQLY-MNRDEVVKTLLTRARIDPGF 89 (353)
Q Consensus 52 ~edI~~VQnL--------IErCLqlY-Msk~Evv~~L~~~a~I~P~f 89 (353)
.+.|..|+.| |++||..| -+-|+||.+|.+. ++.|..
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~-~LPp~L 59 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE-RLAPTL 59 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT-CCCTTT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc-CCCHHH
Confidence 3688889876 89999999 8999999999975 566654
No 2
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=65.72 E-value=4 Score=34.86 Aligned_cols=26 Identities=15% Similarity=0.579 Sum_probs=21.8
Q ss_pred CCCcccHHhHHHHHHHH-HHHHHhhcC
Q 018616 46 DSRKVSRQDIELVQNLI-ERCLQLYMN 71 (353)
Q Consensus 46 ~~r~vS~edI~~VQnLI-ErCLqlYMs 71 (353)
..++.+..||+.+..|| |.|.++||-
T Consensus 84 ~~kn~te~e~rvl~rvi~emC~~qy~~ 110 (121)
T 1tpx_A 84 KGENFTETDIKIMERVVEQMCITQYQR 110 (121)
T ss_dssp HSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778999999999 589999964
No 3
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=64.33 E-value=5.7 Score=33.66 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=36.3
Q ss_pred HHHHHHhh-cCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHH
Q 018616 62 IERCLQLY-MNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYI 110 (353)
Q Consensus 62 IErCLqlY-Msk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~ 110 (353)
+.|||.-| +.+-+-|+.+.-+.+ ..+...++..|-.+-.+||+.|..
T Consensus 72 nKrcLlAYl~~Rl~kI~~~~w~~g--~~L~~~~~~~LS~~E~~f~~~Y~~ 119 (149)
T 2e9x_A 72 NRRCTVAYLYDRLLRIRALRWEYG--SVLPNALRFHMAAEEMEWFNNYKR 119 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--SSCCHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc--ccCChHHHhcCCHHHHHHHHHHHH
Confidence 46899998 567777887776654 244677889999999999999954
No 4
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=55.29 E-value=6.5 Score=36.84 Aligned_cols=52 Identities=13% Similarity=0.358 Sum_probs=45.4
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHh-cCCCCcchHHHHH
Q 018616 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTR-ARIDPGFTTLVWQ 95 (353)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~~~-a~I~P~fT~~VW~ 95 (353)
...++.+|.+|+..|+.+.++.+.++=-|+++.++|..+ ..|-|.+|.+|=.
T Consensus 100 ~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~ 152 (260)
T 2ozb_B 100 TTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGA 152 (260)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCc
Confidence 345789999999999999999999999999999999988 5588988888543
No 5
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=54.59 E-value=7.7 Score=32.49 Aligned_cols=42 Identities=31% Similarity=0.570 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCcchHHH--HHHHHH-------HcHHHHHHHHHHHHHHH
Q 018616 74 EVVKTLLTRARIDPGFTTLV--WQKLEE-------ENADFFRAYYIRLKLKK 116 (353)
Q Consensus 74 Evv~~L~~~a~I~P~fT~~V--W~kLEe-------eNpeFFkaYy~Rl~LK~ 116 (353)
+.|.+--.|-+-+|+||..| |.+--+ .|||||..| .|-+||.
T Consensus 55 ~dv~aRg~qegWn~gFT~k~~gWAek~esGer~vIKnPEyFstY-M~eeLka 105 (115)
T 2es9_A 55 EVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTY-MQEQLKE 105 (115)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHH-HHHHHHH
T ss_pred HHHHHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHH-HHHHHHH
Confidence 44555667899999999987 544322 699999999 3444443
No 6
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=50.96 E-value=8.3 Score=36.22 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=47.9
Q ss_pred ccCCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHh-cCCCCcchHHHHHHH
Q 018616 42 ASSNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTR-ARIDPGFTTLVWQKL 97 (353)
Q Consensus 42 ~~~~~~r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~~~-a~I~P~fT~~VW~kL 97 (353)
+....++.+|.+|+..|+.+.++.+.++=-|+++.++|+.+ ..|-|.+|.+|=..+
T Consensus 84 a~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~v 140 (255)
T 3icx_A 84 AKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPAL 140 (255)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccHH
Confidence 34456788999999999999999999999999999999998 448899988876433
No 7
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=46.49 E-value=1.1e+02 Score=25.52 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=48.5
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHH
Q 018616 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNH 123 (353)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~Rl~LK~QI~~FN~ 123 (353)
.+..|..+.+||..++ .|-.+...-|+.+||-..|... ..-....|+.|+++ +-.|.+||.....
T Consensus 37 ~~g~R~Y~~~dl~~l~-~I~~lr~~G~sl~~I~~~l~~~----~~~~~~~~~~L~~q----------~~~L~~~i~~l~~ 101 (146)
T 3hh0_A 37 EGGHRLYTKDDLYVLQ-QIQSFKHLGFSLGEIQNIILQR----DIETEVFLRQMHFQ----------REVLLAEQERIAK 101 (146)
T ss_dssp TTSCEEBCHHHHHHHH-HHHHHHHTTCCHHHHHHHHTSS----EEEHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred CCCCEeeCHHHHHHHH-HHHHHHHcCCCHHHHHHHHHcc----CCCHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 4567889999999986 4666778899999998887532 11223455555543 3356677766666
Q ss_pred HHHHHhhhh
Q 018616 124 LLEHQYHLM 132 (353)
Q Consensus 124 Lle~Q~~lm 132 (353)
+++.=.+++
T Consensus 102 ~l~~l~~~i 110 (146)
T 3hh0_A 102 VLSHMDEMT 110 (146)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665444443
No 8
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=44.97 E-value=17 Score=27.73 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.2
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 018616 70 MNRDEVVKTLLTRARIDPGFTTLVWQKLE 98 (353)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kLE 98 (353)
||+.|+++.+.++.++...-...|++.|.
T Consensus 1 mtk~eli~~ia~~~~ls~~~~~~~l~~~~ 29 (90)
T 1b8z_A 1 MNKKELIDRVAKKAGAKKKDVKLILDTIL 29 (90)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 89999999999988887666665555443
No 9
>3doe_B ADP-ribosylation factor-like protein 2-binding protein; binder of ARL2, small GTPase, effector, complex structure, GTP-binding, lipoprotein; HET: GTP; 2.25A {Homo sapiens} PDB: 3dof_B* 2k9a_A 2k0s_A
Probab=43.81 E-value=16 Score=32.55 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=33.9
Q ss_pred cccHHhHHHHHHHHHHHHHh---hcCHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 018616 49 KVSRQDIELVQNLIERCLQL---YMNRDEVVKTLLTRARIDPGFTTLVWQKLE 98 (353)
Q Consensus 49 ~vS~edI~~VQnLIErCLql---YMsk~Evv~~L~~~a~I~P~fT~~VW~kLE 98 (353)
.|=.+|+.+|.++||.-|+- ..|.++++.+|+++ .-.+...||+.|-
T Consensus 66 ~I~~eY~~LVE~~Le~~L~e~i~Gfsme~F~~~l~~~---~~e~~~dIfe~Ll 115 (165)
T 3doe_B 66 PIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHH---KDEVAGDIFDMLL 115 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHTTT---CC--CCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhc---chhhHHHHHHHHH
Confidence 45567888898999888877 67999999999865 3356666666554
No 10
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=42.98 E-value=22 Score=27.21 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHH
Q 018616 70 MNRDEVVKTLLTRARIDPGFTTLVWQKL 97 (353)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kL 97 (353)
|||.|+++.+.++.++...-...|++.|
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~~ 28 (90)
T 1mul_A 1 MNKTQLIDVIAEKAELSKTQAKAALEST 28 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8999999999998887666555555443
No 11
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=38.03 E-value=62 Score=27.78 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHhhc--------------CHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 018616 54 DIELVQNLIERCLQLYM--------------NRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKK 116 (353)
Q Consensus 54 dI~~VQnLIErCLqlYM--------------sk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~Rl~LK~ 116 (353)
-....+.||-+||+-++ .-.|++.+|.+ |=.+||+.++.+|+.+-.+|.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Lr~-----------vgdele~~~~~~f~~m~~~L~it~ 69 (157)
T 4hw4_A 4 LYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRR-----------VGDGVQRNHETAFQGMLRKLDIKN 69 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCSCCCSSHHHHHHHHHHHHH-----------HHHHHHHHTHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCCCCCchHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35567888999999887 45677787764 457899999999999987766543
No 12
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=38.00 E-value=37 Score=29.76 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=36.6
Q ss_pred HHHHHHHhh-cCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHH
Q 018616 61 LIERCLQLY-MNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIR 111 (353)
Q Consensus 61 LIErCLqlY-Msk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~R 111 (353)
-+.|||.-| +.+-+-|+.+.-+.+ ......++..|-.+-.+||+.|..-
T Consensus 71 R~Kr~l~aYlr~Rl~KI~~~~w~~~--~~l~~~~~~~LS~~E~~y~~~y~~l 120 (196)
T 2q9q_C 71 RNRRCTVAYLYDRLLRIRALRWEYG--SILPNALRFHMAAEEMEWFNNYKRS 120 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--SSCCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHhhCCHHHHHHHHHHHHH
Confidence 346899988 567777777766543 4445667889999999999999543
No 13
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=37.65 E-value=17 Score=36.04 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=48.2
Q ss_pred ccCCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHh-cCCCCcchHHHHHHH
Q 018616 42 ASSNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTR-ARIDPGFTTLVWQKL 97 (353)
Q Consensus 42 ~~~~~~r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~~~-a~I~P~fT~~VW~kL 97 (353)
+....++.+|.+|+..|+.+.++.+.++=-|+++.++|+.+ ..|-|.+|.+|=..+
T Consensus 217 A~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~v 273 (388)
T 3pla_A 217 AKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPAL 273 (388)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccHH
Confidence 34456789999999999999999999999999999999998 459999998876443
No 14
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=36.87 E-value=25 Score=26.86 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=19.0
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHH
Q 018616 70 MNRDEVVKTLLTRARIDPGFTTLVWQK 96 (353)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~k 96 (353)
|||.|+++.|.++.++...-...|.+.
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~ 27 (90)
T 2o97_B 1 MNKSQLIDKIAAGADISKAAAGRALDA 27 (90)
T ss_dssp CBHHHHHHHHHHTTC-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 899999999998887765544444443
No 15
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=36.67 E-value=16 Score=36.06 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=44.9
Q ss_pred CCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHh-cCCCCcchHHHHH
Q 018616 45 NDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTR-ARIDPGFTTLVWQ 95 (353)
Q Consensus 45 ~~~r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~~~-a~I~P~fT~~VW~ 95 (353)
..++.+|.+|+..|+.+.++.+.++=-|+++.++|+.+ ..|-|.+|.+|=.
T Consensus 221 S~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLvG~ 272 (376)
T 2nnw_A 221 TMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGA 272 (376)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCh
Confidence 34688999999999999999999999999999999988 5588988888544
No 16
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=36.61 E-value=27 Score=27.26 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=22.7
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 018616 70 MNRDEVVKTLLTRARIDPGFTTLVWQKLE 98 (353)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kLE 98 (353)
|++.|+++.+.++.++...-...|++.|.
T Consensus 3 m~k~eli~~ia~~~~ls~~~~~~vl~~~~ 31 (99)
T 1owf_A 3 LTKAEMSEYLFDKLGLSKRDAKELVELFF 31 (99)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999998887766666655543
No 17
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=36.19 E-value=9.1 Score=35.10 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhhcCC
Q 018616 119 LLFNHLLEHQYHLMKYP 135 (353)
Q Consensus 119 ~~FN~Lle~Q~~lm~~~ 135 (353)
..|+++.+-+..|+.-.
T Consensus 100 ~l~~~~~~l~l~LL~a~ 116 (252)
T 3e98_A 100 RLFDKTRRLVLDLLDAT 116 (252)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 45677777777777654
No 18
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=36.07 E-value=25 Score=27.10 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=20.1
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHH
Q 018616 70 MNRDEVVKTLLTRARIDPGFTTLVWQKL 97 (353)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kL 97 (353)
|||.|+++.|.++.++...-...|.+.|
T Consensus 1 M~k~eli~~ia~~~~ls~~~~~~~l~~~ 28 (94)
T 1p71_A 1 MNKGELVDAVAEKASVTKKQADAVLTAA 28 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8899999999888877665555444433
No 19
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=35.94 E-value=1.5e+02 Score=24.83 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=48.7
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHH
Q 018616 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNH 123 (353)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~Rl~LK~QI~~FN~ 123 (353)
.+..|..+.+||..++. |-++-.+-|+.+||-+.|.... -...-+...|..+-++ .+-.|.+||.....
T Consensus 43 ~~g~R~Y~~~dl~~l~~-I~~lr~~G~sl~eI~~~l~~~~-~~~~~~~~~~~~ll~~---------~~~~l~~qi~~L~~ 111 (154)
T 2zhg_A 43 SGNQRRYKRDVLRYVAI-IKIAQRIGIPLATIGEAFGVLP-EGHTLSAKEWKQLSSQ---------WREELDRRIHTLVA 111 (154)
T ss_dssp TTSCEEBCTTHHHHHHH-HHHHHHHTCCHHHHHHHHCC------CCCHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred CCCCEEeCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHhcc-ccCcccHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 35668899999999874 6677889999999998874211 1111233334443322 23468888887777
Q ss_pred HHHHHhhhh
Q 018616 124 LLEHQYHLM 132 (353)
Q Consensus 124 Lle~Q~~lm 132 (353)
+++.=.+++
T Consensus 112 ~~~~L~~~~ 120 (154)
T 2zhg_A 112 LRDELDGCI 120 (154)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 665444443
No 20
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=35.68 E-value=25 Score=27.46 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHH
Q 018616 70 MNRDEVVKTLLTRARIDPGFTTLVWQKL 97 (353)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kL 97 (353)
|||.|+++.|.++.++...-...|++.|
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~ 28 (99)
T 3c4i_A 1 MNKAELIDVLTQKLGSDRRQATAAVENV 28 (99)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8899999999888877665555555443
No 21
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=34.92 E-value=1.9e+02 Score=23.84 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=30.5
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 018616 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLT 81 (353)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~~ 81 (353)
.+..|..+.+||..++ .|-++-.+-|+.+||-+.|..
T Consensus 35 ~~g~R~Y~~~dl~~l~-~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 35 ESGVRKFGAEDLRWIL-FTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp TTSCBCBCHHHHHHHH-HHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHH-HHHHHHHcCCCHHHHHHHHHH
Confidence 4567899999999886 566778899999999887754
No 22
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=34.75 E-value=81 Score=27.99 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=33.9
Q ss_pred CcccHHhHHHHHHHH-H-HHHHhh------cCHHHHHHHHHHhcCCCCcchHHHHHHH
Q 018616 48 RKVSRQDIELVQNLI-E-RCLQLY------MNRDEVVKTLLTRARIDPGFTTLVWQKL 97 (353)
Q Consensus 48 r~vS~edI~~VQnLI-E-rCLqlY------Msk~Evv~~L~~~a~I~P~fT~~VW~kL 97 (353)
..+++.|+..+=+.| | =|-.|+ |++.|+++.+.++.++...-...|++.|
T Consensus 17 ~~l~~~~v~~~Ve~~l~~i~~~L~~~~~~~Mtk~eLi~~ia~~~~lsk~da~~vl~~l 74 (204)
T 2iie_A 17 SHIPAKTVEDAVKEMLEHMASTLAQGGSGGLTKAEMSEYLFDKLGLSKRDAKELVELF 74 (204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTCCSSSBCHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 457777877644444 3 344565 8999999999998887666555555443
No 23
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=34.70 E-value=28 Score=27.27 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=25.0
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 018616 70 MNRDEVVKTLLTRARIDPGFTTLVWQKLEE 99 (353)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kLEe 99 (353)
|||.|+++.|.++.++...-...|++.|.+
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~~~ 30 (99)
T 1exe_A 1 MNKTELIKAIAQDTGLTQVSVSKMLASFEK 30 (99)
T ss_dssp CCTTHHHHHHHHHHCSCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 899999999999999988877777765543
No 24
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=33.20 E-value=25 Score=27.82 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=24.3
Q ss_pred ccHHhHHHHHHHHHHHHHhhcCHHHHHHHH
Q 018616 50 VSRQDIELVQNLIERCLQLYMNRDEVVKTL 79 (353)
Q Consensus 50 vS~edI~~VQnLIErCLqlYMsk~Evv~~L 79 (353)
|.++| ..|..|+|-|+....+-+|+|..+
T Consensus 17 i~c~d-~v~eKl~ElC~~y~~~~~e~V~ew 45 (78)
T 4e2i_2 17 LDCEE-ALIEKLVELCVQYGQNEEGMVGEL 45 (78)
T ss_dssp CCCCH-HHHHHHHTHHHHSCCCHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 45556 689999999999999999998865
No 25
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.21 E-value=38 Score=28.14 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=31.8
Q ss_pred ccHHhHHHHHHHHHHHHHhhcCHHHHHHHHH----HhcCCCCcchHHHHHHHHH
Q 018616 50 VSRQDIELVQNLIERCLQLYMNRDEVVKTLL----TRARIDPGFTTLVWQKLEE 99 (353)
Q Consensus 50 vS~edI~~VQnLIErCLqlYMsk~Evv~~L~----~~a~I~P~fT~~VW~kLEe 99 (353)
|.++| ..|..++|-|+....+-+|.|..+- ...|++| |..-..++|.
T Consensus 40 i~~~d-~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~p--T~enL~~FEh 90 (101)
T 2keb_A 40 LDCEE-ALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGL--TSEILNSFEH 90 (101)
T ss_dssp CBCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBC--CHHHHHHHHH
T ss_pred CCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHH
Confidence 34445 5689999999999999999887542 2345555 4444455553
No 26
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=30.00 E-value=2.2e+02 Score=23.08 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=49.2
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHH
Q 018616 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNH 123 (353)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~Rl~LK~QI~~FN~ 123 (353)
.+..|..+.+||..++ .|-++-.+-|+.+||-+.|.... ++..+..-|.+ .++. .+-.|.+||.....
T Consensus 33 ~~g~R~Y~~~dl~~l~-~I~~lr~~G~sl~eI~~~l~~~~--~~~~~~~~~~~-------~l~~--~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 33 ENGYRTYTQQHLNELT-LLRQARQVGFNLEESGELVNLFN--DPQRHSADVKR-------RTLE--KVAEIERHIEELQS 100 (135)
T ss_dssp TTSCEECCHHHHHHHH-HHHHHHHTTCCHHHHHHHHHHHH--CTTCCHHHHHH-------HHHH--HHHHHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHH-HHHHHHHCCCCHHHHHHHHHhhh--cCCchHHHHHH-------HHHH--HHHHHHHHHHHHHH
Confidence 4566889999999887 46667889999999999886432 12223222222 2222 23456777777776
Q ss_pred HHHHHhhhhc
Q 018616 124 LLEHQYHLMK 133 (353)
Q Consensus 124 Lle~Q~~lm~ 133 (353)
+++.=..++.
T Consensus 101 ~~~~L~~~~~ 110 (135)
T 1q06_A 101 MRDQLLALAN 110 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655544443
No 27
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=29.26 E-value=26 Score=27.08 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=16.1
Q ss_pred hcCHHHHHHHHHHhcCCCCcchHHHHH
Q 018616 69 YMNRDEVVKTLLTRARIDPGFTTLVWQ 95 (353)
Q Consensus 69 YMsk~Evv~~L~~~a~I~P~fT~~VW~ 95 (353)
-|||.|+++.+.++.++...-...|++
T Consensus 3 ~mtk~eLi~~ia~~~~lsk~~~~~~v~ 29 (93)
T 3rhi_A 3 AMNKTELIKNVAQNAEISQKEATVVVQ 29 (93)
T ss_dssp ----CHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 388999999998888776554444443
No 28
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=28.48 E-value=45 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=19.2
Q ss_pred cCHHHHHHHHHHh-cCCCCcchHHHHHH
Q 018616 70 MNRDEVVKTLLTR-ARIDPGFTTLVWQK 96 (353)
Q Consensus 70 Msk~Evv~~L~~~-a~I~P~fT~~VW~k 96 (353)
||+.|+++.+.++ .++...-...|.+.
T Consensus 1 Mtk~eli~~ia~~~~~ls~~~~~~~l~~ 28 (94)
T 1owf_B 1 MTKSELIERLATQQSHIPAKTVEDAVKE 28 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 8999999999888 47765554444443
No 29
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.30 E-value=2.9e+02 Score=22.81 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=30.4
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 018616 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLL 80 (353)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~ 80 (353)
.+..|..+.+||..++. |-++-.+-|+.+||-+.|.
T Consensus 49 ~~g~R~Y~~~dl~~l~~-I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 49 EKGDRIFNEEALKYLEM-ILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp TTCCEEBCHHHHHHHHH-HHHHHTTTCCHHHHHHHHH
T ss_pred CCCCeecCHHHHHHHHH-HHHHHHcCCCHHHHHHHHH
Confidence 45678899999999874 7777889999999998886
No 30
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A
Probab=25.04 E-value=45 Score=30.98 Aligned_cols=25 Identities=20% Similarity=0.620 Sum_probs=17.1
Q ss_pred CCcccHHhHHHHHHHHH-HHHHhhcC
Q 018616 47 SRKVSRQDIELVQNLIE-RCLQLYMN 71 (353)
Q Consensus 47 ~r~vS~edI~~VQnLIE-rCLqlYMs 71 (353)
.++.+..|++.+..||| =|+++||.
T Consensus 184 ~kndte~~vrI~~rlI~emC~~qY~~ 209 (219)
T 1dx0_A 184 GENFTETDIKMMERVVEQMCITQYQR 209 (219)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777774 57777753
No 31
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=24.45 E-value=88 Score=23.05 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=30.1
Q ss_pred CCCCcccHHhHHHHHHHHHHHH-HhhcCHHHHHHHHHHh
Q 018616 45 NDSRKVSRQDIELVQNLIERCL-QLYMNRDEVVKTLLTR 82 (353)
Q Consensus 45 ~~~r~vS~edI~~VQnLIErCL-qlYMsk~Evv~~L~~~ 82 (353)
+..|..+.+||..++ .|-.+. .+-|+.+||.+.|...
T Consensus 40 ~g~R~Y~~~dl~~l~-~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 40 NNYRVYSREEVEAVR-RVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp SSSCEECHHHHHHHH-HHHHHHHHTSTHHHHHHHHHHHS
T ss_pred CCeeecCHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHcc
Confidence 566889999999886 466667 7899999999988654
No 32
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.62 E-value=95 Score=22.02 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 018616 59 QNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEE 100 (353)
Q Consensus 59 QnLIErCLqlYMsk~Evv~~L~~~a~I~P~fT~~VW~kLEee 100 (353)
+.+|++.|..+-++.++.+ ..||.+. ++|++|++-
T Consensus 23 r~~I~~aL~~~gn~~~aA~----~LGIsr~---tL~rklkk~ 57 (61)
T 1g2h_A 23 AQVLKLFYAEYPSTRKLAQ----RLGVSHT---AIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHHSCSHHHHHH----HTTSCTH---HHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHH----HhCCCHH---HHHHHHHHh
Confidence 3455555655557777655 4578764 789998764
No 33
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Probab=22.60 E-value=1.4e+02 Score=26.08 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=31.7
Q ss_pred CcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcch
Q 018616 48 RKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFT 90 (353)
Q Consensus 48 r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~~~a~I~P~fT 90 (353)
+.++.+++..++.....-+..-++.+|.++.|+++..=.|.+.
T Consensus 205 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (262)
T 2qia_A 205 RGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELAETYPEVK 247 (262)
T ss_dssp TTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCGGGH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHH
Confidence 6788888888887777777777888888888877654445433
No 34
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=21.72 E-value=1.9e+02 Score=21.00 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=30.7
Q ss_pred HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018616 93 VWQKLEEENADFFRAYYIRLKLKKQILLFNHLLE 126 (353)
Q Consensus 93 VW~kLEeeNpeFFkaYy~Rl~LK~QI~~FN~Lle 126 (353)
+...++.++.||=.-..++++|--.|..|-+||+
T Consensus 19 ~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 19 LENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 6778888899998888999999999999999997
No 35
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=21.08 E-value=1.7e+02 Score=27.49 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=43.8
Q ss_pred CcccHHhHHHHHHHHHHHHHhhcCH-------HHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHH
Q 018616 48 RKVSRQDIELVQNLIERCLQLYMNR-------DEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRA 107 (353)
Q Consensus 48 r~vS~edI~~VQnLIErCLqlYMsk-------~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFka 107 (353)
..|+.+-++.|-..+++||....++ +.+++.| + +++...-..|...|++++|++.+.
T Consensus 113 ~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~IL-N--~~d~~~e~~iL~~L~~~dpelAe~ 176 (279)
T 3pkr_A 113 GEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIF-N--RLGQKSAKTTLARIESVDNKLAGA 176 (279)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHH-H--TSCHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHH-H--cCChHHHHHHHHHHHhhCHHHHHH
Confidence 5789999999999999999987654 3344433 3 346666678999999999999876
No 36
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=21.07 E-value=78 Score=27.80 Aligned_cols=44 Identities=5% Similarity=-0.016 Sum_probs=34.2
Q ss_pred CcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchH
Q 018616 48 RKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTT 91 (353)
Q Consensus 48 r~vS~edI~~VQnLIErCLqlYMsk~Evv~~L~~~a~I~P~fT~ 91 (353)
|.++.++++.++...+.-++.-++.+|-++.|+++..-.|.+..
T Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (259)
T 3hsq_A 200 AGFSPEVRNAIKHAYKVIYHSGISTRKALDELEASGNLIEQVKY 243 (259)
T ss_dssp TTCCHHHHHHHHHHHHHHHSSSSCHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHH
Confidence 56889999998888887777778889999999877655565433
Done!