RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 018617
(353 letters)
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 386 bits (994), Expect = e-136
Identities = 127/238 (53%), Positives = 169/238 (71%), Gaps = 1/238 (0%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE MR +GR+ A+VL+ +KPG+TT E+D+ H+ I ++GAYP+PLGY GFPKS+CT
Sbjct: 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
SVNE +CHGIPD R L+DGD +NIDV V L+GYHGD++ TF G+V +EA+ LV+VT++
Sbjct: 61 SVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEA 120
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG 295
L+K I PG IG I+ +A++ Y VVR+F GHGIGR FH +P + +Y G
Sbjct: 121 LYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGRPGTG 180
Query: 296 -RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 352
++ FTIEPM+ +G+ V D WT+VT+DGSLSAQFEHT+LIT DG EILT
Sbjct: 181 PKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILTL 238
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 373 bits (961), Expect = e-131
Identities = 122/244 (50%), Positives = 160/244 (65%), Gaps = 1/244 (0%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ + IE MRV+GRLAA+VL+ VKPG+TT E+D+ + I D GA P+PLGY GF
Sbjct: 5 IKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGF 64
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
PKS+CTSVNE +CHGIP + L++GD +NIDVTV +GYHGDTS TF G++ E + L
Sbjct: 65 PKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLC 124
Query: 230 KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY 289
+VTK+ L+ I+ PG IG IQ +A+ + VVR++ GHGIGR FH +P + HY
Sbjct: 125 EVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQIPHY 184
Query: 290 RNNDHG-RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAE 348
G + FTIEPM+ G D WT+VT+DGSLSAQ+EHT+ +T DG E
Sbjct: 185 GAPGDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTEDGPE 244
Query: 349 ILTQ 352
ILT
Sbjct: 245 ILTL 248
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 337 bits (865), Expect = e-114
Identities = 147/288 (51%), Positives = 184/288 (63%), Gaps = 16/288 (5%)
Query: 75 LRPGKVSPHRPVPDHIPRP-------PYV--NS-QKPIGIVSGPEVHDEKGIECMRVSGR 124
LRP +SP R VPDHIP+P P + NS + + PE I+ MR + R
Sbjct: 97 LRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPE-----QIQRMRETCR 151
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHG 184
+A +VL+ A +KPG+TTDEID+ VH+ I G YPSPL Y FPKS CTSVNE ICHG
Sbjct: 152 IAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHG 211
Query: 185 IPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCA 244
IPD+R LEDGD +N+DVTVY G HGD + TFF G+VD+ +R LVK T +CL KAI++
Sbjct: 212 IPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKCTYECLEKAIAIVK 271
Query: 245 PGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRMVLNQTF 303
PG+ Y+++G+ I HA VV+ + GHGIG +FH P + HY RN G M Q F
Sbjct: 272 PGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQVF 331
Query: 304 TIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 351
TIEPM+ G MW D WT VT DG SAQFEHT+L+T G E+LT
Sbjct: 332 TIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLT 379
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 328 bits (843), Expect = e-113
Identities = 111/249 (44%), Positives = 150/249 (60%), Gaps = 2/249 (0%)
Query: 106 SGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLG 165
G E+ + +E MR GR+ A L+ G V+PG+TT E+D+ + + ++GA PSP G
Sbjct: 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEG 65
Query: 166 YGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEA 225
Y GFP S C SVNE + HGIP R ++DGD +NIDV+ YL+GYHGDT TF G V +EA
Sbjct: 66 YYGFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEA 125
Query: 226 RNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPV 285
L +V ++ L I G IG+ I+D A + Y VVR GHG+GR H +P
Sbjct: 126 EKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHEEPS 185
Query: 286 VLHYRNNDHGRMVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILIT 343
V+ + +L T +EP L +G+ + DD WT+VT D SLSAQFEHT+++T
Sbjct: 186 VILTYTDPLPNRLLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVT 245
Query: 344 RDGAEILTQ 352
RDG EILT
Sbjct: 246 RDGPEILTD 254
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 322 bits (828), Expect = e-110
Identities = 113/247 (45%), Positives = 158/247 (63%), Gaps = 4/247 (1%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ + IE MR +G++AA+ L+ +LVKPG+TT E+D+ + I + GAYP+ LGY G
Sbjct: 4 SIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKG 63
Query: 169 FPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE-AR 226
FP C SVNE + HGIP D + L++GD + IDV +++GY GDT+ TF G+V DE A+
Sbjct: 64 FPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAK 123
Query: 227 NLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVV 286
L++ TK+ L+ I PG IG+ IQ++A+ + VVR GHGIGR H +P +
Sbjct: 124 RLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEEPSI 183
Query: 287 LHYRNNDHG-RMVLNQTFTIEPMLTIGSINPVMW-DDNWTIVTEDGSLSAQFEHTILITR 344
+Y + G R+ F IEPM+ GS V D WT+VT+DGSLSAQFEHT+++T
Sbjct: 184 PNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIVTE 243
Query: 345 DGAEILT 351
DG EILT
Sbjct: 244 DGCEILT 250
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 301 bits (773), Expect = e-102
Identities = 117/237 (49%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE +R +GRLAA+VLE VKPG++T E+D+ I +GA P+ LGY GFP SVC
Sbjct: 9 IEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCI 68
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
SVNE + HGIPD + L+DGD +NIDV V +GYHGDT+ TF G + EA L++ T++
Sbjct: 69 SVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEES 128
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDH 294
L+KAI PG +IG IQ +A+ + VVR++ GHGIGR FH +P + +Y + +
Sbjct: 129 LYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGIGRKFHEEPQIPNYGKKFTN 188
Query: 295 GRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 351
R+ FTIEPM+ G+ D WT+ T+DGSLSAQFEHTI+IT +G EILT
Sbjct: 189 VRLKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDNGPEILT 245
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 239 bits (611), Expect = 2e-77
Identities = 100/248 (40%), Positives = 157/248 (63%), Gaps = 9/248 (3%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG- 168
+ + IE +R + ++ A++L+ K G+TT+E+D+ ++ + A P+PL YG
Sbjct: 43 IKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSP 102
Query: 169 -FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
FPK++CTS+NE ICHGIP+ L++GD +NIDV+ ++GY+GD S G+V + +
Sbjct: 103 PFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKK 162
Query: 228 LVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVL 287
+ + + +CL+ AI++ PG+ +IG+ I++ AD+Y + VV QFVGHG+G FH +P V
Sbjct: 163 VCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIKFHENPYVP 222
Query: 288 HYRNNDHGRMVLNQTFTIEPMLTIGS----INPVMWDDNWTIVTEDGSLSAQFEHTILIT 343
H+RN+ + FTIEPM+ +G I+P+ ++W T D SAQ+EHTILIT
Sbjct: 223 HHRNSSKIPLAPGMIFTIEPMINVGKKEGVIDPI---NHWEARTCDNQPSAQWEHTILIT 279
Query: 344 RDGAEILT 351
G EILT
Sbjct: 280 ETGYEILT 287
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 188 bits (480), Expect = 9e-59
Identities = 65/229 (28%), Positives = 94/229 (41%), Gaps = 24/229 (10%)
Query: 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQ-MIIDNGAYPSPLGYGGFPKSVCT 175
E MR + R+AA LE A ++PG+T E+ + + GA FP V +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGA-----RGPAFPPIVAS 55
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
N + H IP R L+DGD + IDV +GYH D + TF G E R L + +
Sbjct: 56 GPNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEA 115
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLHYRNNDH 294
AI+ PG+ + ++ + YG +GHGIG H + + ND
Sbjct: 116 QEAAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGLGHGIGLDVHDEGPYISRGGNDR 175
Query: 295 GRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILIT 343
+ FTIEP I G + E T+L+T
Sbjct: 176 -VLEPGMVFTIEPG----------------IYFIPGWGGVRIEDTVLVT 207
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 177 bits (449), Expect = 7e-54
Identities = 90/238 (37%), Positives = 128/238 (53%), Gaps = 1/238 (0%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I+ M SG+L A ++KPGITT EI+ V + +GA GY G+P ++C
Sbjct: 10 IDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICA 69
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
SVN+ +CH P L +GD + ID+ V LNG D++ T+ G V DEA L+ V ++
Sbjct: 70 SVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENA 129
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG 295
L+K I G IG I+ + + V R F GHGIG+ H +P + H+ G
Sbjct: 130 LYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAIFHFGKQGQG 189
Query: 296 -RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 352
+ TIEP++ +G + + WT T DG LSAQ+EHTI IT+DG ILT+
Sbjct: 190 PELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITKDGPIILTK 247
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 144 bits (366), Expect = 6e-42
Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 31/235 (13%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I +R + +A + A ++PG+T E+ A+ Q + G YP+
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYPAG--------PTIV 52
Query: 176 SVNE--CICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
+ H PD R L++GD + +D+ +GYH D + TF G+ DE R L + +
Sbjct: 53 GSGARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVR 112
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQ-FVGHGIGRVFHADPVVLHYRNN 292
+ A++ PG+ +++ ++ + + G GHGIG H PV +
Sbjct: 113 EAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIGLEIHEPPV---LKAG 169
Query: 293 DHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGA 347
D + F +EP L + G + E T+L+T DG
Sbjct: 170 DDTVLEPGMVFAVEPGLYL-----------------PGGGGVRIEDTVLVTEDGP 207
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 141 bits (357), Expect = 9e-40
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 35/270 (12%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG----FPK 171
IE M +G A + L+KPG+ E+++ V + + P +G G +P
Sbjct: 10 IEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPY 69
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDVTV------------------------YLNG 207
+ C +N+ + H P L++GD + +D+ + Y
Sbjct: 70 ATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTES 129
Query: 208 YHG---DTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYN 264
Y G D+ + G DE +NL+ VTK+ +++ I G IG IQ++A+
Sbjct: 130 YRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRG 189
Query: 265 YGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RMVLNQTFTIEPMLTIGS--INPVMWDD 321
YGVVR VGHG+G H +P+V +Y G R+ TIEPM+ G+ I+ M
Sbjct: 190 YGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTGTWEIDTDM-KT 248
Query: 322 NWTIVTEDGSLSAQFEHTILITRDGAEILT 351
W T DG LS Q+EH +IT+DG ILT
Sbjct: 249 GWAHKTLDGGLSCQYEHQFVITKDGPVILT 278
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 127 bits (322), Expect = 1e-33
Identities = 63/245 (25%), Positives = 96/245 (39%), Gaps = 27/245 (11%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ I +R + +A LE A ++PG+T EI + + GA F
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGA-----EGPSF 208
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
V + N + H P R L DGD + ID+ NGY D + TF G DE R +
Sbjct: 209 DTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIY 268
Query: 230 KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVR-QFVGHGIGRVF--HADPVV 286
+ + AI+ PG+ ++ + ++ YG+ GHG+G V H P
Sbjct: 269 EAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQY 328
Query: 287 LHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDG 346
L + F+IEP + + ED T+L+T DG
Sbjct: 329 L--SPGSDTTLEPGMVFSIEPGI--------YIPGGGGVRIED---------TVLVTEDG 369
Query: 347 AEILT 351
E+LT
Sbjct: 370 FEVLT 374
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 124 bits (313), Expect = 4e-33
Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 15/202 (7%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E +G++A++V E A L+KPG ++ + V I + GA P+ FP
Sbjct: 2 LEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FP--CNI 53
Query: 176 SVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVT 232
S+NE H P D R +GD + +D+ +++GY DT+ T D+ + +LV+ +
Sbjct: 54 SINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTV---DLGGKYEDLVEAS 110
Query: 233 KDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVLHYRN 291
++ L AI V PG+ +IG+ I++ Y + +R GHG+ R HA P + +Y
Sbjct: 111 EEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYELHAGPSIPNYDE 170
Query: 292 NDHGRMVLNQTFTIEPMLTIGS 313
++ + IEP T G
Sbjct: 171 GGGVKLEEGDVYAIEPFATDGE 192
Score = 43.3 bits (103), Expect = 9e-05
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 328 EDGSLSAQFEHTILITRDGAEILT 351
G L +Q EHT+++T DG E+ T
Sbjct: 267 VKGGLVSQAEHTVIVTEDGCEVTT 290
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 113 bits (286), Expect = 2e-29
Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 15/201 (7%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E R +G + QV +YA +L+KPG+T EI + V I + GA P FP ++
Sbjct: 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP------AFPVNL-- 52
Query: 176 SVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVT 232
S+NEC H P D L++GD + +D +++GY D++ T D D + +L++
Sbjct: 53 SINECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTV---DFDPKYDDLLEAA 109
Query: 233 KDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVLHYRN 291
K+ L+ AI P + +IG+ I++ + Y + +R GH I R HA + + +
Sbjct: 110 KEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIPNVKG 169
Query: 292 NDHGRMVLNQTFTIEPMLTIG 312
+ R+ + IEP T G
Sbjct: 170 GEGTRLEEGDVYAIEPFATTG 190
Score = 38.0 bits (89), Expect = 0.005
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 329 DGSLSAQFEHTILITRDGAEILT 351
G AQFEHTI++ DG E+ T
Sbjct: 268 SGGYVAQFEHTIIVREDGKEVTT 290
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 107 bits (271), Expect = 7e-28
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 15/196 (7%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY-PSPLGYGGFPKSVC 174
IE +R + R+A + E +KPG+T E+ + + GA PS F V
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPS------FDTIVA 54
Query: 175 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 234
+ N + HG+P R +E+GD + ID +GY D + T G+ DE + + ++ +
Sbjct: 55 SGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLE 114
Query: 235 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVVLHYRN 291
AI PG+ K++ K +D + YG F+ GHG+G H P +
Sbjct: 115 AQQAAIKAVKPGVTAKEVDKAARDVIEEAGYG--EYFIHRTGHGVGLEVHEAPYISP--G 170
Query: 292 NDHGRMVLNQTFTIEP 307
+D + FTIEP
Sbjct: 171 SD-DVLEEGMVFTIEP 185
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 107 bits (269), Expect = 6e-27
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 15/205 (7%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
D + E +G++ ++V A + PG+ E+ + V I + GA P FP
Sbjct: 1 DIERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPC 54
Query: 172 SVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
++ S+NEC H P D +DGD + +D+ +++GY DT+ T D+ D+ NL
Sbjct: 55 NI--SINECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITV---DLGDQYDNL 109
Query: 229 VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVL 287
VK KD L+ AI G+ +IGK IQ+ + Y + GH + H +
Sbjct: 110 VKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGGKSIP 169
Query: 288 HYRNNDHGRMVLNQTFTIEPMLTIG 312
+ + D ++ IEP T G
Sbjct: 170 NVKERDTTKLEEGDVVAIEPFATDG 194
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 63.6 bits (155), Expect = 4e-11
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 33/220 (15%)
Query: 113 EKGIECMRVSGRLAAQVLEYAGTLVKPGIT----TDEIDKAVHQMIIDNGAYPSPLGYG- 167
E+ + +R + + QV YA +++KPG+ + I+ ++I +G L G
Sbjct: 155 EEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADG-----LKCGW 209
Query: 168 GFPKSVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDD 223
FP S+N C H P D L D +D ++NG D + T F +
Sbjct: 210 AFPTGC--SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAF----NP 263
Query: 224 EARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRY-------NYGV--VRQFVGH 274
+ L++ TKD + I + IG IQ+ + Y Y + +R GH
Sbjct: 264 KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNGH 323
Query: 275 GIGR-VFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 313
IG + H V + ++ RM + F IE T S
Sbjct: 324 SIGPYIIHGGKSVPIVKGGENTRMEEGELFAIE---TFAS 360
Score = 30.1 bits (68), Expect = 1.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 330 GSLSAQFEHTILITRDGAEIL 350
GS ++Q EHTIL+ E+L
Sbjct: 444 GSYTSQMEHTILLRPTCKEVL 464
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 61.6 bits (150), Expect = 5e-11
Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 47/251 (18%)
Query: 120 RVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLG-YGGFPKSVC 174
+ +G++A +VL+ +L PG ++ DK + + + Y G C
Sbjct: 5 KTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEEL--GKVYKKEKKLEKGIAFPTC 62
Query: 175 TSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE-----A 225
SVN C+CH P + L+DGD + ID+ +++GY + T G +
Sbjct: 63 ISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKK 122
Query: 226 RNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVF----- 280
+++ L A+ + PG + I + IQ Y V + H + RV
Sbjct: 123 ADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEG 182
Query: 281 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTI 340
A V HG + P PV+++ ++G + AQF+ T+
Sbjct: 183 KAKLVEC----VKHG--------LLFPY-------PVLYE-------KEGEVVAQFKLTV 216
Query: 341 LITRDGAEILT 351
L+T +G +LT
Sbjct: 217 LLTPNGVTVLT 227
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 56.0 bits (136), Expect = 4e-09
Identities = 61/260 (23%), Positives = 94/260 (36%), Gaps = 42/260 (16%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE MR + ++A+ A +PG++ E++ GA Y V
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL-AYSYI-----VAA 54
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKD 234
N I H + + + L+DGD + ID GY D + TF G DE R L +
Sbjct: 55 GSNAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114
Query: 235 CLHKAISVCAPGMEYKKI----GKTIQDH-----------ADRYNYGVVRQF----VGHG 275
AI+ C PG+ Y+ I + + + + G +F +GH
Sbjct: 115 AQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHY 174
Query: 276 IGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWT----IVTEDGS 331
+G H D + TIEP + I ++ + I ED
Sbjct: 175 LGLDVH-DVGGYLRYLRRARPLEPGMVITIEPGIYF--IPDLLDVPEYFRGGGIRIED-- 229
Query: 332 LSAQFEHTILITRDGAEILT 351
+L+T DG E LT
Sbjct: 230 -------DVLVTEDGPENLT 242
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 51.3 bits (123), Expect = 4e-07
Identities = 67/285 (23%), Positives = 102/285 (35%), Gaps = 72/285 (25%)
Query: 108 PEVHD------EKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-Y 160
P VH+ + I +R +G ++A A +PG+ +++ +H +GA Y
Sbjct: 165 PWVHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARY 224
Query: 161 PSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCG 219
PS + V + N CI H + + DGD + ID GY GD + TF G
Sbjct: 225 PS------YNTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNG 278
Query: 220 DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADR------YNYGVV----- 268
R + + + L ++ + PG ++ + R G++
Sbjct: 279 KFTPAQREIYDIVLESLETSLRLYRPGTSIRE----VTGEVVRIMVSGLVKLGILKGDVD 334
Query: 269 --------RQFVGHGIGRVFHADPV--VLHYRNNDHGR-----MVLNQTFTIEPMLTIGS 313
R F HG+ D V V Y D R MVL T+EP L I
Sbjct: 335 QLIAENAHRPFFMHGLSHWLGLD-VHDVGVY-GQDRSRILEPGMVL----TVEPGLYIAP 388
Query: 314 INPVMWDDNWTIVTEDGSLSAQF-------EHTILITRDGAEILT 351
D + Q+ E I+IT G E LT
Sbjct: 389 ---------------DADVPEQYRGIGIRIEDDIVITETGNENLT 418
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 49.1 bits (117), Expect = 2e-06
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 14/148 (9%)
Query: 169 FPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE 224
FP C SVN C+ H P L++GD + ID+ +++G+ + TF G +E
Sbjct: 77 FP--TCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEE 134
Query: 225 -----ARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR- 278
+++ A+ + PG ++ + I A Y V + H + +
Sbjct: 135 PVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSHQLKQH 194
Query: 279 VFHADPVVLHYRNNDHGRMVLNQTFTIE 306
V + V++ N + + T E
Sbjct: 195 VIDGEKVII--SNPSDSQKKDHDTAEFE 220
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 45.7 bits (108), Expect = 2e-05
Identities = 50/241 (20%), Positives = 88/241 (36%), Gaps = 31/241 (12%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E +R++ +A + E+ ++ G++ EI + + GA + F V +
Sbjct: 133 VEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-----SFDTIVAS 187
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCG--DVDDEARNLVKVTK 233
+ HG + + G+ + +D GY D + T V E+ L V +
Sbjct: 188 GWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQ 247
Query: 234 DCLH---KAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLHY 289
L AIS PG+ +++ + YG GH IG H DP +
Sbjct: 248 IVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVHEDP---RF 304
Query: 290 RNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEI 349
D + T+EP + + G + E +L+T GAE+
Sbjct: 305 SPRDTTTLQPGMLLTVEPGIYL-----------------PGQGGVRIEDVVLVTPQGAEV 347
Query: 350 L 350
L
Sbjct: 348 L 348
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 40.5 bits (94), Expect = 0.001
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 124 RLAAQVLEY----AGTLVKPGITTDEIDKAVHQMIIDNGA------YPSPLGYGGFPKSV 173
R +A++ EY A L++ G T+ E+ A ++ + +G PK +
Sbjct: 188 RKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRFHLISVGADFSPKLI 247
Query: 174 CTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
++ C GD I D V ++GY D + TF G+ + R + + +
Sbjct: 248 PSNTKAC------------SGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIR 295
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRY---NYGVVRQFVGHGIG 277
+S+ APG++ K + + + + NY R +GHG G
Sbjct: 296 TGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYN--RGHLGHGNG 340
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 40.1 bits (93), Expect = 0.001
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 124 RLAAQVLEY----AGTLVKPGITTDEIDKAVHQMIIDNGA------YPSPLGYGGFPKSV 173
R +A++ EY A L++ G T+ E+ A ++ + +G PK +
Sbjct: 105 RKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRFHLISVGADFSPKLI 164
Query: 174 CTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
++ C GD I D V ++GY D + TF G+ + R + + +
Sbjct: 165 PSNTKAC------------SGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIR 212
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRY---NYGVVRQFVGHGIG 277
+S+ APG++ K + + + + NY R +GHG G
Sbjct: 213 TGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYN--RGHLGHGNG 257
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 39.2 bits (91), Expect = 0.003
Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 17/168 (10%)
Query: 185 IPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCA 244
I D+ + GD I D + + GY D + TF G+ D + + + +S+ A
Sbjct: 246 IADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVA 305
Query: 245 PGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFT 304
PG++ K + + G+ GH + H D V L +TF
Sbjct: 306 PGVKLKAVFDSTMAVIKT--SGLPHYNRGH----LGHGDGVFLGLEEVPFVSTQATETFC 359
Query: 305 IEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 352
P + + P +I+ ED ILIT G E L++
Sbjct: 360 --PGMVLSLETPYYGIGVGSIMLED---------MILITDSGFEFLSK 396
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 36.7 bits (85), Expect = 0.011
Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 30/179 (16%)
Query: 183 HGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISV 242
H +R ++ GD ++++ + GY+ T F +V D + + + + +
Sbjct: 69 HNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLEL 128
Query: 243 CAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQT 302
PG K I + + ++ R F G+G H+ V+ HY + G +
Sbjct: 129 IKPGARCKDIAAELNEMYREHDLLRYRTF-GYG-----HSFGVLSHYYGREAGLELREDI 182
Query: 303 FTI---------EPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTIL-ITRDGAEILT 351
T+ EPM+ + P EH IL I +GAE +T
Sbjct: 183 DTVLEPGMVVSMEPMIMLPEGQP--------------GAGGYREHDILVINENGAENIT 227
>gnl|CDD|221891 pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This
is a leucine-zipper-like or homeodomain-like region of
transposase TnpC of insertion element IS66.
Length = 77
Score = 28.4 bits (64), Expect = 1.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 65 DAEPNRRRKRLRPGKVSPHRPVPDHIPR 92
E R RPG+ +P+P+H+PR
Sbjct: 51 APEQPAAPPRRRPGR----KPLPEHLPR 74
>gnl|CDD|163618 cd00842, MPP_ASMase, acid sphingomyelinase and related proteins,
metallophosphatase domain. Acid sphingomyelinase
(ASMase) is a ubiquitously expressed phosphodiesterase
which hydrolyzes sphingomyelin in acid pH conditions to
form ceramide, a bioactive second messenger, as part of
the sphingomyelin signaling pathway. ASMase is
localized at the noncytosolic leaflet of biomembranes
(for example the luminal leaflet of endosomes, lysosomes
and phagosomes, and the extracellular leaflet of plasma
membranes). ASMase-deficient humans develop
Niemann-Pick disease. This disease is characterized by
lysosomal storage of sphingomyelin in all tissues.
Although ASMase-deficient mice are resistant to
stress-induced apoptosis, they have greater
susceptibility to bacterial infection. The latter
correlates with defective phagolysosomal fusion and
antibacterial killing activity in ASMase-deficient
macrophages. ASMase belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 296
Score = 30.3 bits (69), Expect = 1.5
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 258 DHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPV 317
+RY+ + QF GH H D + Y +ND G I L S+ P
Sbjct: 241 QIINRYSDTIAGQFFGHT-----HRDEFRVFYDDNDTGEP-------INVALIAPSVTPY 288
Query: 318 M 318
Sbjct: 289 S 289
>gnl|CDD|239764 cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitochondrial
Elongation factor G1 (mtEFG1)-like proteins found in
eukaryotes. Eukaryotic cells harbor 2 protein
synthesis systems: one localized in the cytoplasm, the
other in the mitochondria. Most factors regulating
mitochondrial protein synthesis are encoded by nuclear
genes, translated in the cytoplasm, and then
transported to the mitochondria. The eukaryotic system
of elongation factor (EF) components is more complex
than that in prokaryotes, with both cytoplasmic and
mitochondrial elongation factors and multiple isoforms
being expressed in certain species. Eukaryotic EF-2
operates in the cytosolic protein synthesis machinery
of eukaryotes, EF-Gs in protein synthesis in bacteria.
Eukaryotic mtEFG1 proteins show significant homology to
bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired
mitochondrial protein synthesis, respiratory defects
and a tendency to lose mitochondrial DNA. There are two
forms of mtEFG present in mammals (designated mtEFG1s
and mtEFG2s) mtEFG2s are not present in this group.
Length = 78
Score = 27.7 bits (62), Expect = 2.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 7/28 (25%)
Query: 29 PLNQLFGYNS-------GKNQVSMQLSR 49
PLN +FGY++ GK + SM+ SR
Sbjct: 46 PLNDMFGYSTELRSMTQGKGEFSMEFSR 73
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 29.7 bits (67), Expect = 2.2
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 150 VHQMIIDNGAYPSPLGYGG--FPKSVCTSV 177
V ++IDNG+ + G+ G P +V S+
Sbjct: 6 VPTIVIDNGSGTTKAGFAGNDTPTTVFPSI 35
>gnl|CDD|222859 PHA02535, P, terminase ATPase subunit; Provisional.
Length = 581
Score = 29.7 bits (67), Expect = 2.5
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Query: 246 GMEYKKIGKTIQDHADRYN--Y-GVVRQFVGHGIG---RVFHADPVVLHYRNNDHGRMVL 299
G+++ + I+ ++YN Y G+ +G G+ + F V ++Y R+VL
Sbjct: 442 GLDFAEQAAEIRKLTEKYNVTYIGIDATGIGAGVYQLVKKFFPAAVAINYSPEVKTRLVL 501
Query: 300 NQTFTIEPMLTIGSINPVMWDDNWT 324
+ + +D WT
Sbjct: 502 K-------AHDVIEHGRLEFDAGWT 519
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 29.3 bits (66), Expect = 3.5
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 206 NGYHGDTSATFFCGDVDDEARNLVKVT-KDCLHKAISVCAPGMEYKKIGKTIQDHADR 262
N YHG+T A GDV L T K L I V +P + G + ++H+ R
Sbjct: 147 NSYHGETLAAMSVGDV-----ALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRR 199
>gnl|CDD|227274 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 28.7 bits (64), Expect = 4.3
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 7 SLQLQPRLLSSFVGNRFIHSTQPLNQLFGYNS-GKNQVSMQLSRTFSGLADLLFNRRNLD 65
L L + ++ + I PL G NS GK+ L +SGL R
Sbjct: 2 ILSLSLKNFKPYINGKIILK--PLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLAC 59
Query: 66 AEPNRRRK 73
AE +R +K
Sbjct: 60 AEYSRNKK 67
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 28.7 bits (65), Expect = 4.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 187 DSRALEDGDTINIDVTVYLNG 207
+ RA E GD + ID +++G
Sbjct: 143 ERRAAEKGDRVTIDFEGFIDG 163
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 29.0 bits (66), Expect = 4.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 185 IPDSRALEDGDTINIDVTVYLNG 207
+P R E+GD + ID ++G
Sbjct: 152 VPVERPAENGDRVTIDFVGSIDG 174
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional.
Length = 472
Score = 28.9 bits (65), Expect = 4.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 63 NLDAEPNRRRKRLRPGKVSPHRP 85
LD +P RR+ RP K +P R
Sbjct: 447 ELDDDPAPRRRTRRPRKRAPRRE 469
>gnl|CDD|216724 pfam01824, MatK_N, MatK/TrnK amino terminal region. The function
of this region is unknown.
Length = 331
Score = 28.6 bits (64), Expect = 5.4
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 21 NRFIHSTQPLNQ--LFGYNSGKNQVSMQLSRTFSGLADLLFNRRNLDAEPNRRRKR---L 75
N FI S NQ G+N KN S +S F+ + ++ F+ R + + + + L
Sbjct: 68 NHFIISVNDSNQNPFLGHN--KNLYSQMISEGFAVIVEIPFSLRLISSLEGKEIVKSHNL 125
Query: 76 RPGKVSPHRPVP 87
R S H P
Sbjct: 126 R----SIHSIFP 133
>gnl|CDD|176473 cd06444, DNA_pol_A, Family A polymerase primarily fills DNA gaps
that arise during DNA repair, recombination and
replication. DNA polymerase family A, 5'-3' polymerase
domain. Family A polymerase functions primarily to fill
DNA gaps that arise during DNA repair, recombination and
replication. DNA-dependent DNA polymerases can be
classified into six main groups based upon phylogenetic
relationships with E. coli polymerase I (classA), E.
coli polymerase II (class B), E.coli polymerase III
(class C), euryarchaeota polymerase II (class D), human
polymerase beta (class X), E. coli UmuC/DinB and
eukaryotic RAP 30/Xeroderma pigmentosum variant (class
Y). Family A polymerases are found primarily in
organisms related to prokaryotes and include prokaryotic
DNA polymerase I, mitochondrial polymerase gamma, and
several bacteriophage polymerases including those from
odd-numbered phage (T3, T5, and T7). Prokaryotic
polymerase I (pol I) has two functional domains located
on the same polypeptide; a 5'-3' polymerase and a 5'-3'
exonuclease. Pol I uses its 5' nuclease activity to
remove the ribonucleotide portion of newly synthesized
Okazaki fragments and the DNA polymerase activity to
fill in the resulting gap. The structure of these
polymerases resembles in overall morphology a cupped
human right hand, with fingers (which bind an incoming
nucleotide and interact with the single-stranded
template), palm (which harbors the catalytic amino acid
residues and also binds an incoming dNTP) and thumb
(which binds double-stranded DNA) subdomains.
Length = 347
Score = 28.5 bits (64), Expect = 5.7
Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 27/114 (23%)
Query: 242 VCAPGMEYKKIGKTIQDHADRYNYGVVR------QFVGHGI--GRVFHADPVVLHYRNND 293
+EYKK+ K + + VR ++V G GR D
Sbjct: 28 AVPLLLEYKKLAKLWSANGWPWLDQWVRDGRFHPEYVPGGTVTGRWASRGGNAQQIPRRD 87
Query: 294 HGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTIL--ITRD 345
+ Q F +P WT+V D S Q E +L ++ D
Sbjct: 88 PLGRDIRQAFVADP--------------GWTLVVADAS---QLELRVLAALSGD 124
>gnl|CDD|218956 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough deal
proteins are both required for correct metaphase
check-pointing during mitosis. These proteins bind to
the centromere/kinetochore.
Length = 593
Score = 28.5 bits (64), Expect = 5.8
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 30/117 (25%)
Query: 177 VNECICHGIPDS------------------RALEDGDTINIDVTVYLNGYHGDTSATF-- 216
+ +C+ IP++ AL++ + ++ D T L Y D + F
Sbjct: 323 IKDCLVKSIPETSSELQEYSEVIEDTEEFEAALKEMNFLDGDATD-LLKYARDVNTHFAN 381
Query: 217 -FCGDVDDEARNL--------VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYN 264
C DV ARNL V VT D + + E K K+ + +
Sbjct: 382 KKCQDVLVTARNLMTSDLHNTVLVTPDSKVVKPKLPSSKAETKAQAKSERLWLENEK 438
>gnl|CDD|223490 COG0413, PanB, Ketopantoate hydroxymethyltransferase [Coenzyme
metabolism].
Length = 268
Score = 27.9 bits (63), Expect = 7.2
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEI 146
D+ G++ + V L VL Y TL +T +++
Sbjct: 32 DQAGVDVLLVGDSLGMVVLGYDSTL---PVTLEDM 63
>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed.
Length = 404
Score = 28.2 bits (64), Expect = 7.8
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 184 GIPD--------SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD-DEARNLVK 230
G+PD AL + + IN+D+ V G T TF D ++A L++
Sbjct: 269 GVPDKPGIAAQIFGALAEAN-INVDMIVQNVSEDGKTDITFTVPRDDLEKALELLE 323
>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase.
This enzyme represents one of at least two mechanisms
for reclaiming CoA from butyryl-CoA at the end of
butyrate biosynthesis (an important process performed by
some colonic bacteria), namely transfer of CoA to
acetate. An alternate mechanism transfers the butyrate
onto inorganic phosphate, after which butyrate kinase
transfers the phosphate onto ADP, creating ATP [Energy
metabolism, Fermentation].
Length = 445
Score = 27.9 bits (62), Expect = 8.8
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 145 EIDKAVHQMIID---NGAYPSPLGYGGFPKSVCTSVNE 179
E+DKAV ++I++ NGA LG GG P +V + + E
Sbjct: 197 EVDKAVAKLIVEEIPNGACLQ-LGIGGMPNAVGSLIAE 233
>gnl|CDD|237726 PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I;
Provisional.
Length = 473
Score = 27.9 bits (63), Expect = 8.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 257 QDHADRYNYGVVRQFV 272
+ YNY VVRQF
Sbjct: 2 ANSPTEYNYKVVRQFA 17
>gnl|CDD|150427 pfam09752, DUF2048, Uncharacterized conserved protein (DUF2048).
The proteins in this family are conserved from plants
to vertebrates. The function is unknown.
Length = 337
Score = 27.7 bits (62), Expect = 9.9
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 52 SGLADLLFNRRNLDAEPNRRR-KRLRPGKVSPHRPVPDHIP 91
S A R L AE R R + L P K SP RPV H+
Sbjct: 60 SPCATYFPGR--LPAESRRARFQWLLPKKWSPKRPVCVHLA 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.427
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,280,040
Number of extensions: 1783678
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1508
Number of HSP's successfully gapped: 55
Length of query: 353
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 255
Effective length of database: 6,590,910
Effective search space: 1680682050
Effective search space used: 1680682050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)