RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018617
(353 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 213 bits (543), Expect = 2e-68
Identities = 112/246 (45%), Positives = 159/246 (64%), Gaps = 3/246 (1%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYG 167
+ + IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY
Sbjct: 2 SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYH 61
Query: 168 GFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEAR 226
G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 62 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGE 121
Query: 227 NLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVV 286
L ++T++ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P V
Sbjct: 122 RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQV 181
Query: 287 LHYRNNDHGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRD 345
LHY + + ++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +
Sbjct: 182 LHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDN 241
Query: 346 GAEILT 351
G EILT
Sbjct: 242 GCEILT 247
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 181 bits (459), Expect = 4e-56
Identities = 88/246 (35%), Positives = 138/246 (56%), Gaps = 2/246 (0%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ IE M+ +G+ A L ++ PG T +++ V ++ P+ GYGG
Sbjct: 3 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 62
Query: 169 FPKSVCTSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
+ + C SVNE + HG+P + ++GD +++DV G +GD + T+ G+ D+ +
Sbjct: 63 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 122
Query: 228 LVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVL 287
LV+VT++ L KAI + PG+ + IQ+ + + V+R +VGHG+GR H DP +
Sbjct: 123 LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIP 182
Query: 288 HYRNNDHGRMVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDG 346
+Y G ++ T IEPM++ G V+ +D WT VT DGS A FEHTILIT +G
Sbjct: 183 NYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENG 242
Query: 347 AEILTQ 352
AEILT+
Sbjct: 243 AEILTK 248
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 173 bits (438), Expect = 2e-52
Identities = 54/255 (21%), Positives = 92/255 (36%), Gaps = 24/255 (9%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ E+ R + QV +Y + +KPG+T EI + +
Sbjct: 50 DQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLA 109
Query: 169 FPKSVCTSVNECI-CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
FP + D+ L+ D ID +++G D + F + +
Sbjct: 110 FPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDT 166
Query: 228 LVKVTKDCLHKAISVCAPGMEYKKIGKTIQDH---------ADRYNYGVVRQFVGHGIGR 278
L+K KD + I + +G+ IQ+ Y +R GH IG+
Sbjct: 167 LLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQ 226
Query: 279 VFH-ADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFE 337
A V + + RM + + IE + G +V GS +AQFE
Sbjct: 227 YRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTG----------KGVVDIKGSYTAQFE 276
Query: 338 HTILITRDGAEILTQ 352
HTIL+ E++++
Sbjct: 277 HTILLRPTCKEVVSR 291
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 150 bits (378), Expect = 5e-44
Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 3/246 (1%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
V E+ ++ ++ G + A+V KPGITT E+D ++ + GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEA-RNL 228
P C SVNE + HGIP R + +GD +NIDV+ NGY+ DT +F G+ DD + +
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 229 VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVV-- 286
V AI+ PG + IGK + + A + + V++ GHG+G H P
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 287 LHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDG 346
++ D + IEP ++ + + W T D S AQ EHT+++T+DG
Sbjct: 183 NYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG 242
Query: 347 AEILTQ 352
+ T+
Sbjct: 243 PILTTK 248
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 138 bits (348), Expect = 2e-39
Identities = 53/253 (20%), Positives = 86/253 (33%), Gaps = 30/253 (11%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I +R +G + A A +PG+ ++ +H +GA Y + V +
Sbjct: 5 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGA-----RYPSYNTIVGS 59
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKD 234
N CI H + + DGD + ID GY GD + TF G R + + +
Sbjct: 60 GENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLE 119
Query: 235 CLHKAISVCAPGM---------------EYKKIGKTIQDHADRYNYGVVRQFVGHGIGRV 279
L ++ + PG K+G D + R F HG+
Sbjct: 120 SLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHW 179
Query: 280 FHADP-VVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEH 338
D V Y + + T+ P L + + + + + E
Sbjct: 180 LGLDVHDVGVYGQDRSRILEPGMVLTVAPGL--------YIAPDAEVPEQYRGIGIRIED 231
Query: 339 TILITRDGAEILT 351
I+IT G E LT
Sbjct: 232 DIVITETGNENLT 244
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 128 bits (321), Expect = 5e-36
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 25/239 (10%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ +
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAA- 61
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
D+ L++GD + IDV V+++G+ DT+ T G +DE ++ K+
Sbjct: 62 ----HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDEL---MEAAKEA 114
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG 295
L+ AISV G+E K++GK I++ + + + GH I R + + H
Sbjct: 115 LNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRPHD 174
Query: 296 RMVL--NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 352
VL F IEP TIG+ + AQFEHTI++ +D + T+
Sbjct: 175 NYVLKEGDVFAIEPFATIGA---------------RNGIVAQFEHTIIVEKDSVIVTTE 218
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 119 bits (299), Expect = 8e-33
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 26/243 (10%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
++ IE + + +A + + A + G E+ V ++ NGA F
Sbjct: 2 TKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPA-----FDT 56
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKV 231
+ + + HG+ + +E GD + ID+ N Y+ D + T G +++ R + ++
Sbjct: 57 IIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEI 116
Query: 232 TKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPV-VLHYR 290
+ +A+ PGM K++ ++ Y YG + H +G +
Sbjct: 117 VLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYG---DYFIHSLGHGVGLEIHEWPRIS 173
Query: 291 NNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEIL 350
D + TIEP + I + E T+LIT +GA+ L
Sbjct: 174 QYDETVLKEGMVITIEPGIYI-----------------PKLGGVRIEDTVLITENGAKRL 216
Query: 351 TQC 353
T+
Sbjct: 217 TKT 219
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 114 bits (284), Expect = 3e-30
Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 17/248 (6%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSP-LGYGG 168
+ + +R R+A + + E+ Q ++ A +
Sbjct: 2 IKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMD 61
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
+ +N H +R + GD ++++ + GY+ T F D+ L
Sbjct: 62 TWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRL 121
Query: 229 VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF-VGHGIGRVFHADPVVL 287
+V + + + PG I + + + +++ R F GH G + H
Sbjct: 122 WQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREA 181
Query: 288 HYRNNDHGRMVL--NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRD 345
+ VL ++EPM +M + G+ + +++ +
Sbjct: 182 GLELREDIDTVLEPGMVVSMEPM--------IMLPEGLP-----GAGGYREHDILIVNEN 228
Query: 346 GAEILTQC 353
GAE +T+
Sbjct: 229 GAENITKF 236
>d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 321
Score = 29.2 bits (64), Expect = 0.80
Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 11/105 (10%)
Query: 239 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGI------GRVFHADPVVLHYRNN 292
A S G + + Q GH + L R
Sbjct: 213 ARSKNIDGPYEIDPEYPLLTSWHDPRNSL--QKCGHASLVHTHTDEWYL---AHLVGRPL 267
Query: 293 DHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFE 337
G + + P+ SI + W DNW V S E
Sbjct: 268 PVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVE 312
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 163
Score = 27.4 bits (60), Expect = 2.0
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 18/106 (16%)
Query: 200 DVTVYLNGYHGDTSATFF------------------CGDVDDEARNLVKVTKDCLHKAIS 241
D+ + G HGD + + RN + L + +
Sbjct: 23 DINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQGSA 82
Query: 242 VCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVL 287
AP ++ ++I R V +GI + F PV L
Sbjct: 83 FYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGIDKTFVGVPVKL 128
>d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 141
Score = 27.0 bits (60), Expect = 2.3
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 19 VGNRFIHSTQPLNQLFGYNSGKNQVSMQLSRTFSGLAD 56
G R + + ++ YNS + + + ++T S D
Sbjct: 86 YGPRTVTPAM-VEGIYKYNSDRKRFTQIPAKTMSMSVD 122
>d1wpia1 c.47.1.18 (A:1-133) Hypothetical protein YKR049C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 133
Score = 26.4 bits (58), Expect = 3.1
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 7 SLQLQPRLLSSFVGN--RFIHSTQPLNQLFGYNSGKNQVSMQLSRTFSGLADLLF 59
+LQ QPR +S F + I S + L L G S + ++++ F L +
Sbjct: 6 TLQRQPRTISLFTNDIASNIKSQKCLQLLKGDVSHR--FDVEIANRFPTWDQLQY 58
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 26.0 bits (57), Expect = 3.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 189 RALEDGDTINIDVTVYLNG 207
A+E D + ID T ++G
Sbjct: 13 GAVEAEDRVTIDFTGSVDG 31
>d1pk6c_ b.22.1.1 (C:) Complement c1q globular head, C chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 25.7 bits (56), Expect = 5.0
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 191 LEDGDTINIDVTVYLNGYHGDTSATFFCG 219
L+ G+ + + V Y + S + F G
Sbjct: 95 LQVGEEVWLAVNDYYDMVGIQGSDSVFSG 123
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 26.1 bits (57), Expect = 5.5
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 9/115 (7%)
Query: 135 TLVKPGITTDEIDKAVHQMIIDNGA----YPSPLGY-----GGFPKSVCTSVNECICHGI 185
TL+KP T +E+ KA + + PS + + P + T V + +
Sbjct: 9 TLLKPTATLEEVAKAAEEALEYGFYGLCIPPSYVAWVRARYPHAPFRLVTVVGFPLGYQE 68
Query: 186 PDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAI 240
+ +ALE H + ++ E R + + + K I
Sbjct: 69 KEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVI 123
>d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin
{Bacteriophage cp-1 [TaxId: 10747]}
Length = 149
Score = 25.6 bits (55), Expect = 7.8
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 289 YRNNDHGRMVLNQTFTIEP--MLTIG 312
Y N +G + N +FT EP ++T+
Sbjct: 124 YFMNTNGELADNPSFTKEPDGLITVA 149
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 382
Score = 25.7 bits (56), Expect = 9.4
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 325 IVTEDGSLSAQFEHTILITRDGAEILTQC 353
+V DG+ EH+ DG ++
Sbjct: 302 VVGRDGTCGVVCEHS---PFDGIVLVQCT 327
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.3 bits (54), Expect = 9.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDN 157
R++ RL +V + + I TD + K + + ID+
Sbjct: 200 PRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 238
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.427
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,380,210
Number of extensions: 67351
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 23
Length of query: 353
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,226,816
Effective search space: 327559872
Effective search space used: 327559872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)