BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018622
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/353 (49%), Positives = 252/353 (71%), Gaps = 7/353 (1%)
Query: 3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
VLAA Q+P +WFQGTADAVRQ+ W+FE+ + IL GDHLYRMDY FIQ+
Sbjct: 104 VLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQA 158
Query: 63 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
H + DADIT++ + E RA+ +GL+KID GRI +FAEKP G L+AM+VDT++LG
Sbjct: 159 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDD 218
Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYW 181
+ A++ P++ASMG+YV KDV+ LLR ++P +NDFGSE+IP A + VQAY++ YW
Sbjct: 219 KRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYW 278
Query: 182 EDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCF 240
EDIGTI++FY AN+ +TK+ P F FYD P YT PR+LPP+K+ + + D++I GC
Sbjct: 279 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCV 338
Query: 241 LRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 300
++ C + HS+VG RS + G ++D++++GADYY+T+++ L A+G VPIG+G+N I+
Sbjct: 339 IKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK 398
Query: 301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
IIDKN +IG +V I+NKD+VQEA R G++I+SGI +++ A I G++I
Sbjct: 399 RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 157/345 (45%), Gaps = 59/345 (17%)
Query: 3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
+L A+Q E+ W++GTADAV Q + E E IL GDH+Y+ DY +Q
Sbjct: 94 ILPASQRVSET--QWYEGTADAVYQNIDIIEPYAP---EYXVILAGDHIYKXDYEYXLQQ 148
Query: 63 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
HVD AD+TI C V A+ +G+ ++ I F EKP A+ + + GF+
Sbjct: 149 HVDSGADVTIGCLEVPRXEATGFGVXHVNEKDEIIDFIEKP--ADPPGIPGNE---GFA- 202
Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRY--PTSN-DFGSEIIPAAIMEHDVQAYIFRD 179
+AS G+YVF L + +R PTS+ DFG +IIP + A+ F D
Sbjct: 203 --------LASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFAD 254
Query: 180 -----------YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI--- 225
YW D+GTI ++++AN+ LT P YD P +T PP K
Sbjct: 255 SCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHD 314
Query: 226 DNCRIKDA---IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIAS 282
D R A ++S C + + S++ R + L++ V+L +
Sbjct: 315 DEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS----------- 363
Query: 283 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADR 327
+ +GR+ ++ N +ID V I + +IV +D +A R
Sbjct: 364 --------VKIGRHAQLSNVVIDHGVVI-PEGLIVGEDPELDAKR 399
>pdb|1EV1|1 Chain 1, Echovirus 1
Length = 281
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 80 SRASDYGLVKIDNMGRI-AQFAEKPSGANLKAMQ----VDTSLLGFSPQEARKCPYVASM 134
S+A YG ++NMG++ + KP+ A + ++ + + P+ R CPY+ S
Sbjct: 203 SQAGVYGFTTLNNMGQLFFRHVNKPNPAAITSVARIYFKPKHVRAWVPRPPRLCPYINST 262
Query: 135 GVYVFKKDV 143
V K V
Sbjct: 263 NVNFEPKPV 271
>pdb|2OZP|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Ttha1904) From Thermus Thermophilus
Length = 345
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 205 HFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE 243
HF P T+ +F+PP K++ I + HG F RE
Sbjct: 46 HFVHPNLRGRTNLKFVPPEKLEPADILVLALPHGVFARE 84
>pdb|1WQ6|A Chain A, The Tetramer Structure Of The Nervy Homolgy Two (Nhr2)
Domain Of Aml1- Eto Is Critical For Aml1-Eto's Activity
pdb|1WQ6|B Chain B, The Tetramer Structure Of The Nervy Homolgy Two (Nhr2)
Domain Of Aml1- Eto Is Critical For Aml1-Eto's Activity
Length = 72
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIR 335
NCI D K + + ++ + QEADR EL ++IR
Sbjct: 31 NCIXDXVEKTRRSLTVLRR--CQEADREELNYWIR 63
>pdb|1BCM|A Chain A, Bacteriophage Mu Transposase Core Domain With 2 Monomers
Per Asymmetric Unit
pdb|1BCM|B Chain B, Bacteriophage Mu Transposase Core Domain With 2 Monomers
Per Asymmetric Unit
pdb|1BCO|A Chain A, Bacteriophage Mu Transposase Core Domain
Length = 327
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSH-VDRDADITI 72
WF G D +R TW ++D K R I +++ R+ +MD + + + D ITI
Sbjct: 32 WFNG--DVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDFHITI 88
>pdb|4FCY|A Chain A, Crystal Structure Of The Bacteriophage Mu Transpososome
pdb|4FCY|B Chain B, Crystal Structure Of The Bacteriophage Mu Transpososome
Length = 529
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSH-VDRDADITI 72
WF G D +R TW ++D K R I +++ R+ +MD + + + D ITI
Sbjct: 203 WFNG--DVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDFHITI 259
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 41 ENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 99
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPE--RYGVVEFDQAGTAVSL 160
Query: 100 AEKP 103
EKP
Sbjct: 161 EEKP 164
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 41 ENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 99
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPE--RYGVVEFDQAGTAVSL 160
Query: 100 AEKP 103
EKP
Sbjct: 161 EEKP 164
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 41 ENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 99
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPE--RYGVVEFDQKGTAVSL 160
Query: 100 AEKP 103
EKP
Sbjct: 161 EEKP 164
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 41 ENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 99
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPE--RYGVVEFDQAGTAVSL 160
Query: 100 AEKP 103
EKP
Sbjct: 161 EEKP 164
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 41 ENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 99
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQKGTAVSL 160
Query: 100 AEKP 103
EKP
Sbjct: 161 EEKP 164
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 41 ENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 99
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQKGTAVSL 160
Query: 100 AEKP 103
EKP
Sbjct: 161 EEKP 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,803,831
Number of Sequences: 62578
Number of extensions: 455803
Number of successful extensions: 938
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 24
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)