Query 018622
Match_columns 353
No_of_seqs 279 out of 2016
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:38:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 3.9E-54 8.4E-59 395.5 30.8 304 1-352 85-392 (393)
2 PLN02241 glucose-1-phosphate a 100.0 1.5E-47 3.2E-52 372.7 37.9 338 16-353 98-436 (436)
3 PRK02862 glgC glucose-1-phosph 100.0 4.9E-46 1.1E-50 361.1 36.7 334 16-353 95-429 (429)
4 KOG1322 GDP-mannose pyrophosph 100.0 5.4E-43 1.2E-47 311.0 23.5 275 18-347 93-370 (371)
5 PRK05293 glgC glucose-1-phosph 100.0 9.8E-42 2.1E-46 327.2 33.1 279 16-353 96-379 (380)
6 PRK00725 glgC glucose-1-phosph 100.0 5.1E-41 1.1E-45 325.6 33.5 293 14-347 106-419 (425)
7 PRK00844 glgC glucose-1-phosph 100.0 2E-40 4.3E-45 320.3 33.3 293 14-347 94-407 (407)
8 TIGR02091 glgC glucose-1-phosp 100.0 1E-36 2.2E-41 290.6 31.7 269 14-318 88-361 (361)
9 COG1208 GCD1 Nucleoside-diphos 100.0 6.4E-37 1.4E-41 289.6 28.2 272 16-353 81-357 (358)
10 COG1207 GlmU N-acetylglucosami 100.0 1.1E-37 2.3E-42 286.8 22.1 314 15-353 74-430 (460)
11 TIGR02092 glgD glucose-1-phosp 100.0 2.4E-35 5.1E-40 281.9 29.9 257 19-319 96-356 (369)
12 PRK14352 glmU bifunctional N-a 100.0 1.8E-34 4E-39 284.8 25.4 312 16-353 78-432 (482)
13 PRK14355 glmU bifunctional N-a 100.0 3.5E-34 7.6E-39 281.3 26.9 315 16-353 76-430 (459)
14 TIGR01208 rmlA_long glucose-1- 100.0 2.4E-33 5.3E-38 266.5 28.9 249 16-318 80-339 (353)
15 PRK14358 glmU bifunctional N-a 100.0 5.8E-33 1.3E-37 273.4 22.8 314 16-353 79-432 (481)
16 PRK09451 glmU bifunctional N-a 100.0 8.1E-33 1.8E-37 271.5 22.7 307 16-353 77-427 (456)
17 TIGR01173 glmU UDP-N-acetylglu 100.0 8.7E-32 1.9E-36 264.0 24.4 307 17-353 73-423 (451)
18 PRK14359 glmU bifunctional N-a 100.0 5.7E-31 1.2E-35 256.7 26.8 296 17-353 78-400 (430)
19 PRK14356 glmU bifunctional N-a 100.0 4.9E-31 1.1E-35 259.0 25.3 310 16-353 77-431 (456)
20 KOG1460 GDP-mannose pyrophosph 100.0 6.1E-32 1.3E-36 236.9 16.3 250 14-320 84-359 (407)
21 PRK14357 glmU bifunctional N-a 100.0 8.8E-31 1.9E-35 256.6 25.0 306 16-353 70-416 (448)
22 PRK14353 glmU bifunctional N-a 100.0 1.6E-30 3.4E-35 254.7 25.8 305 16-353 79-413 (446)
23 PRK14354 glmU bifunctional N-a 100.0 5E-30 1.1E-34 252.0 24.2 311 16-353 73-426 (458)
24 PRK14360 glmU bifunctional N-a 100.0 3E-29 6.5E-34 246.0 25.2 308 16-353 74-423 (450)
25 KOG1461 Translation initiation 100.0 2.1E-27 4.5E-32 227.2 23.2 294 18-353 109-423 (673)
26 KOG1462 Translation initiation 99.9 1.4E-25 3.1E-30 203.7 18.3 261 17-318 95-402 (433)
27 cd06428 M1P_guanylylT_A_like_N 99.9 2.9E-24 6.4E-29 195.3 17.4 157 16-197 82-257 (257)
28 COG1209 RfbA dTDP-glucose pyro 99.9 1.6E-24 3.4E-29 190.0 14.2 156 15-200 80-238 (286)
29 cd06425 M1P_guanylylT_B_like_N 99.9 8E-23 1.7E-27 183.2 17.9 152 16-198 81-233 (233)
30 TIGR01105 galF UTP-glucose-1-p 99.9 1.1E-22 2.4E-27 187.7 17.9 158 14-198 103-277 (297)
31 PF00483 NTP_transferase: Nucl 99.9 7.6E-23 1.7E-27 184.8 15.7 160 16-199 81-247 (248)
32 TIGR02623 G1P_cyt_trans glucos 99.9 4.5E-22 9.8E-27 180.5 17.9 150 16-202 100-249 (254)
33 PRK10122 GalU regulator GalF; 99.9 4.6E-22 1E-26 183.9 17.9 157 14-197 103-276 (297)
34 PRK13389 UTP--glucose-1-phosph 99.9 4.3E-22 9.2E-27 184.5 17.4 155 15-198 109-280 (302)
35 TIGR01207 rmlA glucose-1-phosp 99.9 3E-21 6.5E-26 177.4 16.9 153 16-198 80-237 (286)
36 cd02538 G1P_TT_short G1P_TT_sh 99.9 5.7E-21 1.2E-25 171.9 17.3 153 16-198 81-238 (240)
37 PRK15480 glucose-1-phosphate t 99.9 8.5E-21 1.8E-25 174.7 18.0 152 16-198 84-241 (292)
38 cd02541 UGPase_prokaryotic Pro 99.9 1.1E-20 2.4E-25 172.8 16.5 158 15-198 100-265 (267)
39 cd02524 G1P_cytidylyltransfera 99.8 6.2E-20 1.3E-24 166.5 18.6 149 17-200 100-248 (253)
40 TIGR01099 galU UTP-glucose-1-p 99.8 3.4E-20 7.4E-25 168.9 15.7 154 14-193 99-260 (260)
41 cd04189 G1P_TT_long G1P_TT_lon 99.8 1.1E-18 2.4E-23 156.5 18.0 153 16-199 80-235 (236)
42 cd06422 NTP_transferase_like_1 99.8 3.2E-19 7E-24 158.5 14.1 140 17-193 80-221 (221)
43 cd06915 NTP_transferase_WcbM_l 99.8 1.5E-18 3.3E-23 153.9 15.8 145 16-193 78-222 (223)
44 COG1210 GalU UDP-glucose pyrop 99.8 1.6E-18 3.5E-23 152.4 14.3 164 11-201 100-273 (291)
45 cd04181 NTP_transferase NTP_tr 99.8 3.4E-18 7.4E-23 151.1 16.3 140 16-185 78-217 (217)
46 cd06426 NTP_transferase_like_2 99.8 1.3E-17 2.9E-22 147.9 17.1 142 16-194 78-220 (220)
47 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 4.8E-17 1E-21 144.6 9.3 134 157-319 29-178 (231)
48 cd04183 GT2_BcE_like GT2_BcbE_ 99.7 7.6E-16 1.7E-20 137.7 16.1 144 16-190 79-230 (231)
49 cd02509 GDP-M1P_Guanylyltransf 99.6 1.9E-15 4.2E-20 138.4 10.9 157 16-189 81-273 (274)
50 cd05636 LbH_G1P_TT_C_like Puta 99.6 5.2E-15 1.1E-19 125.2 12.1 125 209-353 10-162 (163)
51 cd02523 PC_cytidylyltransferas 99.6 1.6E-14 3.5E-19 128.9 12.4 145 18-194 78-229 (229)
52 COG1044 LpxD UDP-3-O-[3-hydrox 99.6 6.9E-14 1.5E-18 127.2 15.2 96 182-277 76-188 (338)
53 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 2.1E-14 4.5E-19 124.9 11.3 142 208-353 25-177 (193)
54 TIGR01479 GMP_PMI mannose-1-ph 99.6 4E-14 8.7E-19 138.9 14.6 163 16-194 81-281 (468)
55 cd04197 eIF-2B_epsilon_N The N 99.6 1.1E-14 2.4E-19 129.0 9.5 121 16-144 85-217 (217)
56 cd02508 ADP_Glucose_PP ADP-glu 99.5 1E-13 2.2E-18 121.3 13.6 112 14-184 88-200 (200)
57 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 2.2E-13 4.7E-18 127.3 15.1 47 180-226 66-113 (324)
58 PRK05450 3-deoxy-manno-octulos 99.5 2.9E-13 6.3E-18 122.1 14.4 165 16-197 71-244 (245)
59 cd04651 LbH_G1P_AT_C Glucose-1 99.5 3.4E-13 7.5E-18 105.2 11.9 103 222-347 1-104 (104)
60 PRK05289 UDP-N-acetylglucosami 99.5 2.1E-13 4.6E-18 124.0 11.8 143 208-353 6-174 (262)
61 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 3.2E-13 7E-18 122.5 12.9 62 291-353 109-171 (254)
62 cd02517 CMP-KDO-Synthetase CMP 99.5 4.2E-13 9E-18 120.6 13.3 158 16-195 71-238 (239)
63 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 2.5E-13 5.4E-18 123.5 11.1 145 207-351 120-291 (338)
64 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 8.5E-13 1.8E-17 124.8 14.7 52 302-353 238-294 (343)
65 PRK12461 UDP-N-acetylglucosami 99.5 7E-13 1.5E-17 119.7 13.3 63 291-353 102-170 (255)
66 COG1207 GlmU N-acetylglucosami 99.5 2.1E-13 4.6E-18 126.8 9.7 99 248-352 286-386 (460)
67 TIGR01852 lipid_A_lpxA acyl-[a 99.5 5.6E-13 1.2E-17 120.9 12.4 94 248-353 76-170 (254)
68 cd02540 GT2_GlmU_N_bac N-termi 99.5 1.5E-12 3.3E-17 116.0 14.9 151 17-190 71-229 (229)
69 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 4.9E-13 1.1E-17 121.3 11.6 62 291-353 103-165 (254)
70 COG0663 PaaY Carbonic anhydras 99.4 6.9E-13 1.5E-17 110.4 9.3 100 212-325 13-113 (176)
71 TIGR01853 lipid_A_lpxD UDP-3-O 99.4 9.4E-13 2E-17 123.0 10.9 62 292-353 219-286 (324)
72 TIGR01852 lipid_A_lpxA acyl-[a 99.4 2.2E-12 4.8E-17 117.0 13.0 139 209-353 9-164 (254)
73 TIGR02287 PaaY phenylacetic ac 99.4 2E-12 4.3E-17 111.8 11.3 99 213-334 11-119 (192)
74 cd04646 LbH_Dynactin_6 Dynacti 99.4 2.7E-12 5.8E-17 108.5 11.7 111 232-351 17-132 (164)
75 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 3.4E-12 7.5E-17 111.0 11.6 95 215-312 14-113 (193)
76 cd04745 LbH_paaY_like paaY-lik 99.4 5E-12 1.1E-16 106.0 11.5 96 232-347 18-123 (155)
77 PLN02296 carbonate dehydratase 99.4 5.3E-12 1.1E-16 114.4 11.6 114 210-335 52-170 (269)
78 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 4E-12 8.7E-17 120.3 11.1 61 291-352 210-275 (343)
79 cd04652 LbH_eIF2B_gamma_C eIF- 99.4 5.6E-12 1.2E-16 93.7 9.5 65 235-318 2-67 (81)
80 PRK14358 glmU bifunctional N-a 99.4 5.9E-12 1.3E-16 124.5 12.5 83 232-317 270-356 (481)
81 PRK13627 carnitine operon prot 99.4 7.6E-12 1.6E-16 108.5 11.7 103 213-333 13-120 (196)
82 PRK12461 UDP-N-acetylglucosami 99.4 4E-12 8.7E-17 114.8 10.3 139 208-353 3-152 (255)
83 PRK13368 3-deoxy-manno-octulos 99.3 1.1E-11 2.3E-16 111.4 12.7 155 16-195 72-236 (238)
84 PRK05289 UDP-N-acetylglucosami 99.3 6E-12 1.3E-16 114.5 10.9 60 211-270 3-66 (262)
85 TIGR01173 glmU UDP-N-acetylglu 99.3 4.9E-12 1.1E-16 124.2 11.1 96 216-314 261-361 (451)
86 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 6.1E-12 1.3E-16 110.4 10.4 52 301-353 132-183 (205)
87 cd02507 eIF-2B_gamma_N_like Th 99.3 3E-12 6.4E-17 113.4 8.1 119 16-144 86-216 (216)
88 PLN02472 uncharacterized prote 99.3 1.1E-11 2.5E-16 110.8 10.6 122 212-352 61-187 (246)
89 TIGR03308 phn_thr-fam phosphon 99.3 1E-11 2.2E-16 108.6 9.9 34 232-265 19-53 (204)
90 cd05636 LbH_G1P_TT_C_like Puta 99.3 2.8E-11 6E-16 102.4 11.8 109 207-347 20-162 (163)
91 PRK14356 glmU bifunctional N-a 99.3 1.5E-11 3.2E-16 121.0 11.1 81 217-316 270-354 (456)
92 COG0836 {ManC} Mannose-1-phosp 99.3 3.4E-11 7.3E-16 108.8 12.2 166 2-194 80-282 (333)
93 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 2.3E-11 4.9E-16 90.4 9.4 77 219-314 2-80 (81)
94 cd00710 LbH_gamma_CA Gamma car 99.3 4.1E-11 8.8E-16 101.7 12.1 116 213-353 5-131 (167)
95 cd03356 LbH_G1P_AT_C_like Left 99.3 2.6E-11 5.7E-16 89.5 9.6 66 235-319 2-68 (79)
96 cd04650 LbH_FBP Ferripyochelin 99.3 6.2E-11 1.4E-15 99.1 11.9 88 232-337 18-114 (154)
97 cd04645 LbH_gamma_CA_like Gamm 99.3 7.5E-11 1.6E-15 98.6 12.1 97 232-347 17-122 (153)
98 PRK14357 glmU bifunctional N-a 99.3 2.4E-11 5.2E-16 119.3 10.5 64 232-315 273-338 (448)
99 PRK09451 glmU bifunctional N-a 99.3 2.2E-11 4.8E-16 119.8 10.1 95 217-314 266-365 (456)
100 cd05787 LbH_eIF2B_epsilon eIF- 99.2 4.6E-11 9.9E-16 88.1 9.1 66 235-319 2-68 (79)
101 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 4.8E-11 1E-15 104.7 10.8 56 208-263 11-70 (205)
102 cd04198 eIF-2B_gamma_N The N-t 99.2 1.1E-11 2.4E-16 109.5 6.3 119 16-144 84-214 (214)
103 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 3.6E-11 7.8E-16 108.5 9.6 107 209-319 102-212 (272)
104 PRK14352 glmU bifunctional N-a 99.2 4.8E-11 1E-15 118.2 10.3 57 215-272 270-329 (482)
105 PRK15460 cpsB mannose-1-phosph 99.2 1E-10 2.2E-15 114.2 11.1 162 16-194 86-290 (478)
106 cd03350 LbH_THP_succinylT 2,3, 99.2 1.3E-10 2.9E-15 95.5 10.0 29 291-319 82-111 (139)
107 COG1043 LpxA Acyl-[acyl carrie 99.2 2.5E-10 5.4E-15 98.7 11.9 61 291-351 107-173 (260)
108 TIGR00965 dapD 2,3,4,5-tetrahy 99.2 1.2E-10 2.7E-15 104.1 10.2 129 209-351 105-235 (269)
109 cd04745 LbH_paaY_like paaY-lik 99.2 4.3E-10 9.3E-15 94.2 12.1 95 206-319 8-114 (155)
110 KOG1461 Translation initiation 99.2 5.3E-11 1.1E-15 115.3 7.3 90 211-319 328-420 (673)
111 COG1043 LpxA Acyl-[acyl carrie 99.2 1E-10 2.2E-15 101.0 8.2 62 290-351 81-155 (260)
112 PRK14353 glmU bifunctional N-a 99.2 1.8E-10 3.9E-15 113.0 11.0 80 249-332 287-368 (446)
113 cd05824 LbH_M1P_guanylylT_C Ma 99.2 2.6E-10 5.6E-15 84.5 9.1 64 233-319 6-69 (80)
114 cd04651 LbH_G1P_AT_C Glucose-1 99.1 2.8E-10 6E-15 88.7 9.6 61 233-318 2-62 (104)
115 cd03356 LbH_G1P_AT_C_like Left 99.1 2.9E-10 6.4E-15 83.9 9.2 75 219-312 2-79 (79)
116 PRK14354 glmU bifunctional N-a 99.1 1.5E-10 3.3E-15 113.9 10.0 79 232-314 283-364 (458)
117 TIGR03308 phn_thr-fam phosphon 99.1 4.7E-10 1E-14 98.1 11.6 58 207-265 11-70 (204)
118 PRK14360 glmU bifunctional N-a 99.1 2.6E-10 5.6E-15 112.1 10.8 65 232-316 280-346 (450)
119 TIGR03570 NeuD_NnaD sugar O-ac 99.1 7.8E-10 1.7E-14 96.3 12.7 21 179-199 61-81 (201)
120 cd03358 LbH_WxcM_N_like WcxM-l 99.1 2.1E-10 4.6E-15 91.5 8.2 83 232-334 16-100 (119)
121 cd00710 LbH_gamma_CA Gamma car 99.1 1.1E-09 2.3E-14 93.0 12.7 106 206-330 10-127 (167)
122 PRK14355 glmU bifunctional N-a 99.1 3.2E-10 7E-15 111.7 10.5 70 232-324 274-343 (459)
123 PLN02296 carbonate dehydratase 99.1 4.2E-10 9.1E-15 102.0 10.1 97 233-353 59-169 (269)
124 TIGR02287 PaaY phenylacetic ac 99.1 1.1E-09 2.5E-14 94.6 11.6 96 206-320 16-123 (192)
125 PLN02472 uncharacterized prote 99.1 6.2E-10 1.3E-14 99.6 10.1 98 232-353 65-176 (246)
126 cd03359 LbH_Dynactin_5 Dynacti 99.1 1.1E-09 2.4E-14 92.3 11.0 99 232-337 27-125 (161)
127 cd03360 LbH_AT_putative Putati 99.1 2.3E-09 5E-14 92.6 12.7 28 291-318 139-167 (197)
128 cd04650 LbH_FBP Ferripyochelin 99.1 3E-09 6.5E-14 89.0 12.7 95 206-319 8-114 (154)
129 cd04646 LbH_Dynactin_6 Dynacti 99.0 1.3E-09 2.9E-14 92.1 10.1 98 207-323 8-123 (164)
130 cd05787 LbH_eIF2B_epsilon eIF- 99.0 1.6E-09 3.6E-14 79.7 9.1 75 219-312 2-79 (79)
131 cd05824 LbH_M1P_guanylylT_C Ma 99.0 1.8E-09 3.8E-14 79.9 9.2 74 220-312 3-80 (80)
132 TIGR00965 dapD 2,3,4,5-tetrahy 99.0 1.9E-09 4.2E-14 96.5 11.1 99 217-337 101-209 (269)
133 KOG1462 Translation initiation 99.0 6.1E-10 1.3E-14 102.4 7.8 119 179-319 300-420 (433)
134 PRK14359 glmU bifunctional N-a 99.0 1.4E-09 3.1E-14 106.2 11.0 65 228-312 260-326 (430)
135 PRK11830 dapD 2,3,4,5-tetrahyd 99.0 2.2E-09 4.7E-14 97.0 11.3 102 214-337 101-212 (272)
136 cd03350 LbH_THP_succinylT 2,3, 99.0 2.2E-09 4.7E-14 88.3 10.4 42 302-344 76-117 (139)
137 cd04645 LbH_gamma_CA_like Gamm 99.0 4.9E-09 1.1E-13 87.6 11.3 95 206-319 7-113 (153)
138 PRK13627 carnitine operon prot 99.0 4.4E-09 9.5E-14 91.2 9.8 95 207-320 19-125 (196)
139 COG0663 PaaY Carbonic anhydras 98.9 1E-08 2.2E-13 85.6 10.6 97 206-321 19-127 (176)
140 cd04649 LbH_THP_succinylT_puta 98.9 5.6E-09 1.2E-13 84.8 8.8 61 249-320 48-108 (147)
141 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.9 9.5E-09 2.1E-13 91.5 10.7 94 207-318 89-195 (231)
142 PLN02694 serine O-acetyltransf 98.9 6.4E-09 1.4E-13 94.1 8.7 79 233-318 167-247 (294)
143 TIGR03570 NeuD_NnaD sugar O-ac 98.9 1.1E-08 2.5E-13 88.9 10.0 26 291-316 160-186 (201)
144 cd05635 LbH_unknown Uncharacte 98.9 9.5E-09 2.1E-13 79.5 8.3 66 232-318 29-96 (101)
145 cd03360 LbH_AT_putative Putati 98.9 1.4E-08 3E-13 87.7 9.7 8 180-187 59-66 (197)
146 PRK05293 glgC glucose-1-phosph 98.9 8.6E-09 1.9E-13 99.1 9.1 90 207-317 285-380 (380)
147 cd05635 LbH_unknown Uncharacte 98.8 2.6E-08 5.6E-13 77.1 9.0 80 233-352 12-93 (101)
148 cd04649 LbH_THP_succinylT_puta 98.8 5.7E-08 1.2E-12 79.0 9.9 13 340-352 91-103 (147)
149 PRK10502 putative acyl transfe 98.8 4.7E-08 1E-12 84.0 9.8 51 213-265 54-108 (182)
150 PLN02917 CMP-KDO synthetase 98.8 1.7E-07 3.6E-12 86.7 13.8 162 16-200 117-290 (293)
151 TIGR03536 DapD_gpp 2,3,4,5-tet 98.7 6.7E-08 1.5E-12 87.6 10.5 15 302-316 251-265 (341)
152 cd03359 LbH_Dynactin_5 Dynacti 98.7 1.3E-07 2.8E-12 79.7 11.7 68 233-319 43-125 (161)
153 PRK11132 cysE serine acetyltra 98.7 3.7E-08 8E-13 89.1 8.4 81 232-318 147-228 (273)
154 PLN02357 serine acetyltransfer 98.7 4.8E-08 1E-12 90.9 8.9 68 248-319 246-314 (360)
155 KOG1460 GDP-mannose pyrophosph 98.7 3.1E-08 6.6E-13 88.3 7.2 92 206-319 290-389 (407)
156 TIGR01172 cysE serine O-acetyl 98.7 6.3E-08 1.4E-12 81.6 8.8 37 233-271 68-104 (162)
157 COG2171 DapD Tetrahydrodipicol 98.7 5.7E-08 1.2E-12 85.9 8.8 107 207-321 111-220 (271)
158 TIGR03535 DapD_actino 2,3,4,5- 98.7 9.5E-08 2.1E-12 86.2 10.3 20 180-199 109-130 (319)
159 cd00208 LbetaH Left-handed par 98.7 1.1E-07 2.4E-12 69.4 8.6 34 234-267 2-37 (78)
160 KOG3121 Dynactin, subunit p25 98.7 3.2E-08 7E-13 78.5 5.6 109 232-348 39-147 (184)
161 cd00208 LbetaH Left-handed par 98.7 1.2E-07 2.6E-12 69.2 8.1 68 249-353 1-77 (78)
162 PRK09677 putative lipopolysacc 98.7 2.1E-07 4.6E-12 80.7 10.8 34 233-266 66-103 (192)
163 TIGR02091 glgC glucose-1-phosp 98.7 9.7E-08 2.1E-12 91.1 9.3 64 235-318 280-344 (361)
164 cd03358 LbH_WxcM_N_like WcxM-l 98.6 1.3E-07 2.7E-12 75.3 8.3 80 233-334 5-94 (119)
165 PRK09527 lacA galactoside O-ac 98.6 1.9E-07 4.2E-12 81.3 9.7 50 214-265 59-112 (203)
166 COG2171 DapD Tetrahydrodipicol 98.6 6.3E-08 1.4E-12 85.6 6.5 99 217-337 109-218 (271)
167 TIGR02092 glgD glucose-1-phosp 98.6 1.3E-07 2.8E-12 90.6 9.3 61 232-318 278-338 (369)
168 COG1045 CysE Serine acetyltran 98.6 1.4E-07 3.1E-12 79.7 8.1 81 233-319 74-155 (194)
169 TIGR03536 DapD_gpp 2,3,4,5-tet 98.6 1.5E-07 3.3E-12 85.4 8.8 28 291-319 257-284 (341)
170 PRK02862 glgC glucose-1-phosph 98.6 1.3E-07 2.8E-12 92.4 9.1 99 234-353 294-423 (429)
171 COG0448 GlgC ADP-glucose pyrop 98.6 1.5E-07 3.2E-12 88.0 8.7 64 234-318 281-345 (393)
172 COG1208 GCD1 Nucleoside-diphos 98.6 2.2E-07 4.9E-12 88.3 9.6 25 292-316 287-311 (358)
173 cd03354 LbH_SAT Serine acetylt 98.6 2.5E-07 5.4E-12 71.6 7.8 20 299-318 52-71 (101)
174 PRK00725 glgC glucose-1-phosph 98.6 1.9E-07 4.2E-12 91.0 8.7 55 244-318 323-377 (425)
175 cd04647 LbH_MAT_like Maltose O 98.6 3.8E-07 8.3E-12 71.3 8.7 33 232-266 7-39 (109)
176 PRK00844 glgC glucose-1-phosph 98.6 2.4E-07 5.1E-12 89.9 9.1 54 245-318 312-365 (407)
177 TIGR01208 rmlA_long glucose-1- 98.5 3.2E-07 6.9E-12 87.3 9.4 92 232-348 254-352 (353)
178 PLN02739 serine acetyltransfer 98.5 2.4E-07 5.1E-12 85.7 7.9 28 291-318 264-292 (355)
179 PLN02241 glucose-1-phosphate a 98.5 3.2E-07 6.9E-12 89.8 8.9 93 237-350 304-420 (436)
180 PRK09527 lacA galactoside O-ac 98.5 1.2E-06 2.7E-11 76.2 11.3 27 291-317 138-165 (203)
181 TIGR01172 cysE serine O-acetyl 98.5 4.7E-07 1E-11 76.3 8.1 29 291-319 120-149 (162)
182 PRK10191 putative acyl transfe 98.5 1.2E-06 2.5E-11 72.3 10.2 29 291-319 99-128 (146)
183 PF07959 Fucokinase: L-fucokin 98.5 2.7E-06 6E-11 82.3 13.2 95 41-149 54-158 (414)
184 cd03357 LbH_MAT_GAT Maltose O- 98.5 2.3E-06 5E-11 72.7 11.3 35 232-266 62-100 (169)
185 PRK11132 cysE serine acetyltra 98.5 1.9E-06 4.1E-11 78.1 11.3 72 232-325 141-217 (273)
186 cd03357 LbH_MAT_GAT Maltose O- 98.4 1.1E-06 2.4E-11 74.6 9.3 9 249-257 89-97 (169)
187 PRK10191 putative acyl transfe 98.4 6.1E-07 1.3E-11 74.0 7.3 36 233-270 48-83 (146)
188 TIGR03535 DapD_actino 2,3,4,5- 98.4 1.1E-06 2.4E-11 79.4 9.3 25 291-316 232-256 (319)
189 PRK10502 putative acyl transfe 98.4 9.7E-07 2.1E-11 75.9 8.5 38 233-272 58-97 (182)
190 PRK10092 maltose O-acetyltrans 98.4 1.3E-06 2.8E-11 75.1 8.9 34 232-265 73-110 (183)
191 PLN02357 serine acetyltransfer 98.4 2.3E-06 4.9E-11 79.9 10.9 53 248-318 278-330 (360)
192 cd05825 LbH_wcaF_like wcaF-lik 98.4 1.9E-06 4.2E-11 67.3 8.6 32 232-265 9-40 (107)
193 PLN02694 serine O-acetyltransf 98.4 1.9E-06 4E-11 78.3 9.2 14 250-263 214-227 (294)
194 PRK10092 maltose O-acetyltrans 98.4 3.9E-06 8.4E-11 72.1 10.8 8 235-242 70-77 (183)
195 PLN02739 serine acetyltransfer 98.3 2.3E-06 4.9E-11 79.3 9.4 37 233-271 212-248 (355)
196 PRK09677 putative lipopolysacc 98.3 3.9E-06 8.5E-11 72.8 9.4 55 218-272 31-91 (192)
197 cd03354 LbH_SAT Serine acetylt 98.3 3.7E-06 8E-11 64.9 7.7 28 291-318 61-89 (101)
198 PRK13412 fkp bifunctional fuco 98.3 1.1E-05 2.4E-10 84.4 13.0 216 42-305 154-393 (974)
199 cd05825 LbH_wcaF_like wcaF-lik 98.2 1.9E-05 4E-10 61.7 10.7 15 255-269 24-38 (107)
200 KOG1322 GDP-mannose pyrophosph 98.1 2.6E-06 5.6E-11 77.4 4.7 90 231-337 263-352 (371)
201 cd04647 LbH_MAT_like Maltose O 98.1 1.7E-05 3.6E-10 61.9 8.9 11 232-242 21-31 (109)
202 COG1045 CysE Serine acetyltran 98.1 1.4E-05 2.9E-10 67.8 8.7 90 210-317 67-170 (194)
203 COG1213 Predicted sugar nucleo 98.1 2.3E-05 5E-10 68.5 9.6 142 19-199 83-230 (239)
204 KOG4750 Serine O-acetyltransfe 98.1 6.2E-06 1.4E-10 70.8 5.5 24 248-271 168-191 (269)
205 cd03349 LbH_XAT Xenobiotic acy 98.0 2.5E-05 5.4E-10 64.5 8.6 19 248-266 21-39 (145)
206 COG0110 WbbJ Acetyltransferase 98.0 2.6E-05 5.6E-10 67.3 7.6 35 232-266 67-105 (190)
207 KOG3121 Dynactin, subunit p25 97.9 2.1E-05 4.7E-10 62.7 5.0 36 232-267 54-103 (184)
208 KOG4042 Dynactin subunit p27/W 97.8 2.6E-05 5.7E-10 62.7 4.5 108 215-325 7-137 (190)
209 TIGR02353 NRPS_term_dom non-ri 97.7 8.6E-05 1.9E-09 76.6 8.0 35 232-266 112-149 (695)
210 TIGR02353 NRPS_term_dom non-ri 97.7 0.00012 2.5E-09 75.7 8.9 34 232-265 597-633 (695)
211 cd02513 CMP-NeuAc_Synthase CMP 97.7 0.00045 9.7E-09 61.0 11.0 140 19-195 78-221 (223)
212 TIGR00453 ispD 2-C-methyl-D-er 97.3 0.0018 3.9E-08 57.0 10.0 136 21-195 77-215 (217)
213 COG4801 Predicted acyltransfer 97.3 0.0019 4.2E-08 56.1 9.4 57 245-319 47-104 (277)
214 KOG4042 Dynactin subunit p27/W 97.3 0.00019 4.2E-09 57.8 3.1 90 211-313 21-131 (190)
215 COG4801 Predicted acyltransfer 97.3 0.0018 3.8E-08 56.3 9.0 79 232-334 22-101 (277)
216 TIGR00466 kdsB 3-deoxy-D-manno 97.3 0.0052 1.1E-07 55.1 12.5 143 40-190 88-237 (238)
217 PF00132 Hexapep: Bacterial tr 97.2 0.00032 7E-09 43.0 2.7 13 302-314 20-32 (36)
218 cd03349 LbH_XAT Xenobiotic acy 97.0 0.0018 3.9E-08 53.4 6.0 24 249-272 2-27 (145)
219 PF00132 Hexapep: Bacterial tr 97.0 0.00091 2E-08 40.9 3.1 10 233-242 2-11 (36)
220 KOG4750 Serine O-acetyltransfe 96.9 0.0022 4.7E-08 55.5 6.1 27 327-353 202-233 (269)
221 PRK00155 ispD 2-C-methyl-D-ery 96.9 0.007 1.5E-07 53.7 9.6 140 20-198 81-223 (227)
222 cd02516 CDP-ME_synthetase CDP- 96.8 0.007 1.5E-07 53.2 8.6 136 20-192 79-217 (218)
223 TIGR03584 PseF pseudaminic aci 96.8 0.038 8.2E-07 49.0 13.1 141 18-195 75-218 (222)
224 PF14602 Hexapep_2: Hexapeptid 96.7 0.0021 4.5E-08 38.9 3.1 29 234-263 3-32 (34)
225 COG0110 WbbJ Acetyltransferase 96.6 0.0056 1.2E-07 52.7 6.7 19 301-319 124-142 (190)
226 COG1212 KdsB CMP-2-keto-3-deox 96.2 0.077 1.7E-06 46.4 10.9 165 17-199 73-244 (247)
227 PRK09382 ispDF bifunctional 2- 96.2 0.063 1.4E-06 51.5 11.6 129 21-199 83-214 (378)
228 PRK13385 2-C-methyl-D-erythrit 95.0 0.23 4.9E-06 44.1 9.9 137 22-198 85-224 (230)
229 TIGR03310 matur_ygfJ molybdenu 94.2 0.35 7.5E-06 41.1 9.0 50 17-71 72-123 (188)
230 PLN02474 UTP--glucose-1-phosph 93.9 4.9 0.00011 39.6 17.0 251 17-307 188-466 (469)
231 PF12804 NTP_transf_3: MobA-li 92.2 0.27 5.9E-06 40.7 5.0 54 17-75 68-123 (160)
232 PF07959 Fucokinase: L-fucokin 92.0 0.32 6.9E-06 47.4 5.8 36 232-267 284-320 (414)
233 PRK00317 mobA molybdopterin-gu 91.0 2.7 5.8E-05 36.0 10.1 40 19-64 74-115 (193)
234 PRK02726 molybdopterin-guanine 85.9 8.7 0.00019 33.2 9.9 42 17-64 76-119 (200)
235 cd04182 GT_2_like_f GT_2_like_ 84.7 1.7 3.7E-05 36.6 4.8 49 17-69 72-122 (186)
236 COG1083 NeuA CMP-N-acetylneura 84.4 9.1 0.0002 33.5 8.9 138 22-199 83-224 (228)
237 COG2068 Uncharacterized MobA-r 79.3 23 0.00049 30.7 9.6 49 14-66 75-125 (199)
238 TIGR02665 molyb_mobA molybdopt 74.7 5.7 0.00012 33.6 4.8 46 17-68 71-118 (186)
239 cd02503 MobA MobA catalyzes th 74.6 5.8 0.00013 33.4 4.8 41 17-63 67-109 (181)
240 TIGR00454 conserved hypothetic 73.9 5.6 0.00012 34.0 4.5 52 19-75 73-126 (183)
241 PRK13412 fkp bifunctional fuco 71.6 7.2 0.00016 42.0 5.5 53 245-316 333-387 (974)
242 cd00897 UGPase_euk Eukaryotic 69.2 52 0.0011 30.5 10.0 119 17-150 112-234 (300)
243 TIGR03202 pucB xanthine dehydr 66.2 12 0.00027 31.7 5.0 48 16-66 75-124 (190)
244 PLN02728 2-C-methyl-D-erythrit 65.4 60 0.0013 29.2 9.5 137 21-198 103-245 (252)
245 cd04193 UDPGlcNAc_PPase UDPGlc 64.7 69 0.0015 30.1 10.1 121 16-149 131-256 (323)
246 PRK00560 molybdopterin-guanine 61.1 19 0.00042 30.9 5.4 57 136-197 133-191 (196)
247 PF04519 Bactofilin: Polymer-f 60.5 26 0.00056 26.5 5.4 18 254-271 36-53 (101)
248 KOG2638 UDP-glucose pyrophosph 57.5 1.9E+02 0.0042 28.1 14.1 58 18-76 214-274 (498)
249 COG1664 CcmA Integral membrane 55.8 47 0.001 27.3 6.4 28 244-271 46-74 (146)
250 PF00535 Glycos_transf_2: Glyc 54.3 74 0.0016 25.1 7.6 53 18-76 63-116 (169)
251 cd02518 GT2_SpsF SpsF is a gly 53.6 94 0.002 27.2 8.7 32 40-71 88-121 (233)
252 PF04519 Bactofilin: Polymer-f 53.4 83 0.0018 23.6 7.2 28 291-318 70-97 (101)
253 cd04180 UGPase_euk_like Eukary 53.3 1.2 2.7E-05 40.5 -3.6 127 16-149 109-241 (266)
254 PRK14500 putative bifunctional 52.5 1.5E+02 0.0032 28.2 10.1 42 16-63 227-270 (346)
255 PF01704 UDPGP: UTP--glucose-1 48.9 82 0.0018 30.8 7.9 166 18-199 168-357 (420)
256 COG4284 UDP-glucose pyrophosph 48.1 1.4E+02 0.0031 29.5 9.2 118 17-147 215-337 (472)
257 PRK14490 putative bifunctional 47.9 1.8E+02 0.0039 27.8 10.1 38 19-62 244-283 (369)
258 cd00761 Glyco_tranf_GTA_type G 47.4 58 0.0013 25.0 5.8 42 16-63 60-102 (156)
259 COG4750 LicC CTP:phosphocholin 46.2 1.6E+02 0.0034 25.6 8.1 137 21-198 82-226 (231)
260 PLN02435 probable UDP-N-acetyl 42.0 1.7E+02 0.0036 29.4 8.9 123 16-149 236-364 (493)
261 COG1664 CcmA Integral membrane 34.3 2.1E+02 0.0045 23.5 7.0 29 291-319 91-119 (146)
262 PRK14489 putative bifunctional 31.2 61 0.0013 30.9 4.0 45 19-69 78-124 (366)
263 cd04188 DPG_synthase DPG_synth 29.7 1.2E+02 0.0027 25.6 5.4 51 18-74 67-118 (211)
264 PTZ00339 UDP-N-acetylglucosami 29.6 5.8E+02 0.013 25.5 10.7 121 17-149 226-351 (482)
265 KOG2638 UDP-glucose pyrophosph 26.5 1.1E+02 0.0024 29.7 4.6 49 248-310 447-495 (498)
266 cd04179 DPM_DPG-synthase_like 26.4 1.5E+02 0.0033 24.2 5.3 51 18-74 64-115 (185)
267 PLN02726 dolichyl-phosphate be 25.0 1.3E+02 0.0029 26.3 4.8 49 19-73 79-128 (243)
268 TIGR03552 F420_cofC 2-phospho- 22.7 82 0.0018 26.7 2.9 41 20-64 75-117 (195)
269 cd06442 DPM1_like DPM1_like re 22.7 2.6E+02 0.0056 23.6 6.2 51 16-72 61-112 (224)
270 COG2266 GTP:adenosylcobinamide 22.1 2.1E+02 0.0046 24.3 5.0 66 132-197 92-167 (177)
271 PF01936 NYN: NYN domain; Int 21.7 1.6E+02 0.0035 23.2 4.3 31 41-75 97-127 (146)
272 KOG4644 L-fucose kinase [Carbo 21.3 87 0.0019 31.2 2.9 56 245-319 212-267 (948)
273 cd06427 CESA_like_2 CESA_like_ 20.5 2.1E+02 0.0046 24.8 5.3 50 19-74 70-120 (241)
274 cd06167 LabA_like LabA_like pr 20.2 3.2E+02 0.0068 21.8 5.8 34 39-76 99-132 (149)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-54 Score=395.51 Aligned_cols=304 Identities=37% Similarity=0.682 Sum_probs=271.2
Q ss_pred CeeecCcccCCCCCCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCC
Q 018622 1 MFVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 80 (353)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~ 80 (353)
++|+||+++. .++.|+.|||+|++|...++.+ .+.+++++++||+++++|+++|+++|.++++++|+++.+++.+
T Consensus 85 v~ilp~~~~~--~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~ 159 (393)
T COG0448 85 VFILPAQQRE--GGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPRE 159 (393)
T ss_pred EEEeCchhcc--CCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChH
Confidence 4899999992 3557999999999999999984 6789999999999999999999999999999999999999988
Q ss_pred CCCcceEEEECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCc
Q 018622 81 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 157 (353)
Q Consensus 81 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~ 157 (353)
++++||++.+|++|+|+.|.|||..... ...++++|+|+|++++|.++|++... +..|
T Consensus 160 eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~D 220 (393)
T COG0448 160 EASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPNSSHD 220 (393)
T ss_pred hhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccCcccc
Confidence 8899999999999999999999987221 12389999999999999988886542 3468
Q ss_pred hhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec-eeeeceEEC
Q 018622 158 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIIS 236 (353)
Q Consensus 158 ~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig 236 (353)
|.++++|.+++++++++|+++|||.||||.++|++||++|++..+.+.+++++|+|++.....||+++.. +.+.+|.|+
T Consensus 221 fgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~ 300 (393)
T COG0448 221 FGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVA 300 (393)
T ss_pred chHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEeeeeee
Confidence 9999999999999999999999999999999999999999997778889999999999999999999975 888999999
Q ss_pred CCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEE
Q 018622 237 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 316 (353)
Q Consensus 237 ~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i 316 (353)
.||+|.+ +|.||+|+++++|+++|.|++|+++++ +.||++|+|++|||+++|.|++|++|
T Consensus 301 ~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~g~~i 360 (393)
T COG0448 301 GGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGEGVVI 360 (393)
T ss_pred CCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCCCcEE
Confidence 9999996 999999999999999999999999999 89999999999999999999999999
Q ss_pred ccCCCcccccCCCCceEEccCeEEecCCcEECCCcc
Q 018622 317 VNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 352 (353)
Q Consensus 317 ~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~v 352 (353)
++.. ++..+.. ..+. +++.+|++++.++.+..
T Consensus 361 ~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 361 GGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred cCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 9874 2222222 3444 77788899998877653
No 2
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.5e-47 Score=372.69 Aligned_cols=338 Identities=73% Similarity=1.245 Sum_probs=280.4
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
++++|||+||++++.++.+.....+++|||++||++++.|+.+++++|+++++++|+++++++.+++++||++.+|++++
T Consensus 98 ~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~ 177 (436)
T PLN02241 98 GWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGR 177 (436)
T ss_pred ccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCC
Confidence 57899999999999887631101148999999999999999999999999999999999988755578999999998899
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEEE
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQA 174 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~~ 174 (353)
|++|.|||..+....+++++++|+.++..++...+++++|+|+|++++|..++++..+...++.+++++.++++ .++++
T Consensus 178 v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~ 257 (436)
T PLN02241 178 IIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQA 257 (436)
T ss_pred EEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEE
Confidence 99999999765444556666666654433333457999999999999997777655444347788999999987 68999
Q ss_pred EEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEeceeeeceEECCCcEECceEEeeeEEcCC
Q 018622 175 YIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGER 254 (353)
Q Consensus 175 ~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ig~~ 254 (353)
|.++|||.|+|+|++|++|+++++...+...++.+.+++++.....+|+.+.++.+.+|+|+++|+|+++.|.+|+|+++
T Consensus 258 ~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~~~~~I~~~~I~~svI~~~ 337 (436)
T PLN02241 258 YLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLR 337 (436)
T ss_pred EeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEEcCCcEEcCeEEEeeEEcCC
Confidence 99999999999999999999999987665566777788888777779999988888889999999999778899999999
Q ss_pred cEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622 255 SRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 334 (353)
Q Consensus 255 ~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i 334 (353)
|.||++|+|.++++++.+.+........+...+.++++||++|.|++++|++++.||+++.+.+.+++.+..++|++++|
T Consensus 338 ~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~ 417 (436)
T PLN02241 338 SRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYI 417 (436)
T ss_pred CEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEE
Confidence 99999999999999996433222111122212322248999999999999999999999999999999999999999999
Q ss_pred ccCeEEecCCcEECCCccC
Q 018622 335 RSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 335 ~~~~~vig~~~~i~~g~vv 353 (353)
+.|+++||+++.|++||+|
T Consensus 418 ~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 418 RSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred eCCEEEEcCCcEeCCCCCC
Confidence 9997789999999999986
No 3
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4.9e-46 Score=361.13 Aligned_cols=334 Identities=53% Similarity=0.979 Sum_probs=273.6
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
.+++|||+||+++++++++ ..+++|+|++||+++++|+++++++|+++++++|+++.+.+.+.+..||++.+|++++
T Consensus 95 ~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~ 171 (429)
T PRK02862 95 SWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGR 171 (429)
T ss_pred ccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCc
Confidence 4468999999999999963 2347899999999999999999999999999999999877654467899999998899
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY 175 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~ 175 (353)
|..|.|||..+....+.++.++|...+...+...+++++|+|+|++++|..++++.. ...++.+++++.++++.++.+|
T Consensus 172 V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~dil~~l~~~~~v~~~ 250 (429)
T PRK02862 172 ITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGKEIIPEAIRDYKVQSY 250 (429)
T ss_pred EEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHHHHHHHHhccCcEEEE
Confidence 999999997554444555555554444433334568999999999999977776532 2346677999999988999999
Q ss_pred EecceEeEcCCHHHHHHHHHhhc-cCCCcccccCCCCceecCCCCCCCeEEeceeeeceEECCCcEECceEEeeeEEcCC
Q 018622 176 IFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGER 254 (353)
Q Consensus 176 ~~~g~w~dIgtp~~y~~a~~~ll-~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ig~~ 254 (353)
.+++||.|+|||++|++++++++ ...+....+.+.+++++.+.+.+|+.+.++.+++++||++|.|.++.|.+|+||++
T Consensus 251 ~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i~~~~i~~svi~~~ 330 (429)
T PRK02862 251 LFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIR 330 (429)
T ss_pred EeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCCEECCcEEEEEEEeCC
Confidence 99999999999999999999998 54555566677888999999999998877888899999999997688999999999
Q ss_pred cEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622 255 SRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 334 (353)
Q Consensus 255 ~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i 334 (353)
|+||++|+|.+|++++++.+......-.....+.+.+.||++|.|.+|+|++++.||+++.+.+...++...+...+++|
T Consensus 331 ~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 410 (429)
T PRK02862 331 SRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYI 410 (429)
T ss_pred cEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCcccccccccceEe
Confidence 99999999999999985322111110000001111278999999999999999999999999998888887777889999
Q ss_pred ccCeEEecCCcEECCCccC
Q 018622 335 RSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 335 ~~~~~vig~~~~i~~g~vv 353 (353)
+.|+++|+.++++++||+|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 411 RDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred eCCEEEEcCCcCCCCCCCC
Confidence 9998899999999999975
No 4
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=5.4e-43 Score=310.96 Aligned_cols=275 Identities=36% Similarity=0.569 Sum_probs=215.4
Q ss_pred ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECC-CCCe
Q 018622 18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-MGRI 96 (353)
Q Consensus 18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~-~g~V 96 (353)
++||+|.+..|+.++..+ .+.+|+|+|||+++++||.+|+++|+++++++|+++.++++ +++||++..|+ .|+|
T Consensus 93 plgtaGpl~laR~~L~~~---~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vde--pSkyGvv~~d~~~grV 167 (371)
T KOG1322|consen 93 PLGTAGPLALARDFLWVF---EDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDE--PSKYGVVVIDEDTGRV 167 (371)
T ss_pred CCcccchHHHHHHHhhhc---CCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccC--ccccceEEEecCCCce
Confidence 566777777777766531 22389999999999999999999999999999999999987 89999999998 8999
Q ss_pred eEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEE
Q 018622 97 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYI 176 (353)
Q Consensus 97 ~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~ 176 (353)
.+|.|||+... ++-+|+|+|+|+|++|++++. .+. +++++++|.+++++++++|.
T Consensus 168 ~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~~--~pt--SiekEifP~~a~~~~l~a~~ 222 (371)
T KOG1322|consen 168 IRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRILL--RPT--SIEKEIFPAMAEEHQLYAFD 222 (371)
T ss_pred eEehhCchhhh---------------------hccccceEEEECHHHHhHhhh--ccc--chhhhhhhhhhhcCceEEEe
Confidence 99999998432 467789999999999998762 233 47889999999999999999
Q ss_pred ecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEeceeeec--eEECCCcEECceEEeeeEEcCC
Q 018622 177 FRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKD--AIISHGCFLRECTVEHSIVGER 254 (353)
Q Consensus 177 ~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~--~~ig~~~~i~~~~v~~~~ig~~ 254 (353)
++|||+|||+|++|+.+...+++.. +.++..+..||+.+.++++-+ ..+|.+|.|+ .|++||++
T Consensus 223 l~gfWmDIGqpkdf~~g~~~Yl~s~----------~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig----~~vvIG~r 288 (371)
T KOG1322|consen 223 LPGFWMDIGQPKDFLTGFSFYLRSL----------PKYTSPRLLPGSKIVGNVLVDSIASIGENCSIG----PNVVIGPR 288 (371)
T ss_pred cCchhhhcCCHHHHHHHHHHHHhhC----------cccCCccccCCccccccEeeccccccCCccEEC----CCceECCC
Confidence 9999999999999999977666543 334455566677666655543 4578888888 46999999
Q ss_pred cEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622 255 SRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 334 (353)
Q Consensus 255 ~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i 334 (353)
|+|+.|+.|++|.+++++.+..+.++.+.+-+.. +.||.++ +|..++.||.++++.+...+.+ +.+..+
T Consensus 289 ~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~--~~IG~~~-----~id~~a~lG~nV~V~d~~~vn~----g~~l~~ 357 (371)
T KOG1322|consen 289 VRIEDGVRLQDSTILGADYYETHSEISSSIVGWN--VPIGIWA-----RIDKNAVLGKNVIVADEDYVNE----GSGLPI 357 (371)
T ss_pred cEecCceEEEeeEEEccceechhHHHHhhhcccc--ccccCce-----EEecccEeccceEEeccccccc----ceeEEe
Confidence 9999999999999999999999999975443333 6777666 4555555555555555433222 245667
Q ss_pred ccCeEEecCCcEE
Q 018622 335 RSGITIIMEKATI 347 (353)
Q Consensus 335 ~~~~~vig~~~~i 347 (353)
.++.+.|-++++|
T Consensus 358 ks~~~~v~~~~iI 370 (371)
T KOG1322|consen 358 KSGITVVLKPAII 370 (371)
T ss_pred ccceeeccccccc
Confidence 7776777777665
No 5
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=9.8e-42 Score=327.22 Aligned_cols=279 Identities=36% Similarity=0.627 Sum_probs=238.9
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
+|++|||+||++|++++++ ..+++|+|++||++++.|+.+++++|+++++++|+++.+.+.+++.+||++.+|++++
T Consensus 96 ~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~ 172 (380)
T PRK05293 96 KWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMR 172 (380)
T ss_pred cccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCc
Confidence 5789999999999999963 1236899999999999999999999999999999988776544478899999988899
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-Cc
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-HD 171 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-~~ 171 (353)
|..|.|||..+. ++++++|+|+|++++|..++++... ...+|.+|+++.++++ .+
T Consensus 173 V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~ 231 (380)
T PRK05293 173 IVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEK 231 (380)
T ss_pred EEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCe
Confidence 999999986432 3688999999999999767664321 2346778999999876 58
Q ss_pred EEEEEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec-eeeeceEECCCcEECceEEeeeE
Q 018622 172 VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLRECTVEHSI 250 (353)
Q Consensus 172 i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~~~~v~~~~ 250 (353)
+.+|.++++|.|+|+|++|++|+++++...+...++++.+.+.+.+.+.+|++|+. +.+.++.||++|+|+ +.+.+|+
T Consensus 232 v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~-~~v~~s~ 310 (380)
T PRK05293 232 LYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVY-GTVEHSV 310 (380)
T ss_pred EEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEecCEECCCCEEc-ceecceE
Confidence 99999999999999999999999999987766667778888888888999999975 888999999999997 5678999
Q ss_pred EcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCC
Q 018622 251 VGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 330 (353)
Q Consensus 251 ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~ 330 (353)
||++|.||++|+|++|+++++ +.|++++.|.+|+|++++.|++++.+.++...
T Consensus 311 ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~-------- 363 (380)
T PRK05293 311 LFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIGDGVIIGGGKEV-------- 363 (380)
T ss_pred EcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEECCCCEEcCCCce--------
Confidence 999999999999999999998 89999999999999999999999999876321
Q ss_pred ceEEccCeEEecCCcEECCCccC
Q 018622 331 GFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 331 ~~~i~~~~~vig~~~~i~~g~vv 353 (353)
..+||++++|+++++|
T Consensus 364 -------~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 364 -------ITVIGENEVIGVGTVI 379 (380)
T ss_pred -------eEEEeCCCCCCCCcEe
Confidence 2567778888777764
No 6
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.1e-41 Score=325.62 Aligned_cols=293 Identities=34% Similarity=0.627 Sum_probs=238.7
Q ss_pred CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
.+++++|||+||++|++++++ ..+++|+|++||++++.|+.+++++|+++++++|+++.+++.+.+.+||++.+|++
T Consensus 106 ~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~ 182 (425)
T PRK00725 106 EENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDEN 182 (425)
T ss_pred CCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCC
Confidence 446789999999999999973 22478999999999999999999999999999999998875444789999999988
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhC---CCCCchhhhhhhhhhhcC
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFGSEIIPAAIMEH 170 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~---~~~~~~~~d~l~~l~~~~ 170 (353)
++|+.|.|||..+.. ++.+ ..+.++++|+|+|++++|..++++.. ....+|.+|+++.+++++
T Consensus 183 ~~V~~~~EKp~~~~~--~~~~------------~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~ 248 (425)
T PRK00725 183 DRITAFVEKPANPPA--MPGD------------PDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEG 248 (425)
T ss_pred CCEEEEEECCCCccc--cccC------------ccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccC
Confidence 999999999864421 0000 02468999999999999866665432 123567789999999999
Q ss_pred cEEEEEec-----------ceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEe----c--eeeece
Q 018622 171 DVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID----N--CRIKDA 233 (353)
Q Consensus 171 ~i~~~~~~-----------g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~----~--~~i~~~ 233 (353)
++++|.++ +||.|+|+|++|++|+++++...+...++....++++.....+|+.+. + +.+.+|
T Consensus 249 ~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s 328 (425)
T PRK00725 249 KVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINS 328 (425)
T ss_pred cEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeC
Confidence 99999986 699999999999999999998766555666677787777777877652 2 456799
Q ss_pred EECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622 234 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 313 (353)
Q Consensus 234 ~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~ 313 (353)
+||++|+|.++.|.+|+|+++|.||++|.|++|+++++ +.||++|.|.+|+|++++.|+++
T Consensus 329 ~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~~~i~~~ii~~~~~i~~~ 389 (425)
T PRK00725 329 LVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRSCRLRRCVIDRGCVIPEG 389 (425)
T ss_pred EEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCCCEEeeEEECCCCEECCC
Confidence 99999999878899999999999999999999999998 89999999999999999999999
Q ss_pred eEEccCCCcccccCCCCceEE-ccCeEEecCCcEE
Q 018622 314 VVIVNKDDVQEADRPELGFYI-RSGITIIMEKATI 347 (353)
Q Consensus 314 ~~i~~~~~~~~~~~~~~~~~i-~~~~~vig~~~~i 347 (353)
++++...... .++.+| ..|.++|+.++.+
T Consensus 390 ~~i~~~~~~~-----~~~~~~~~~~~~~i~~~~~~ 419 (425)
T PRK00725 390 MVIGEDPEED-----AKRFRRSEEGIVLVTREMLD 419 (425)
T ss_pred CEECCCCCCC-----CceeEecCccEEEECCCccc
Confidence 9997543221 122444 6677788887654
No 7
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2e-40 Score=320.31 Aligned_cols=293 Identities=32% Similarity=0.596 Sum_probs=237.8
Q ss_pred CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
+.++++|||+||+++++++++ .+.++|+|++||++++.|+.+++++|+++++++|+++.+.+.+.+.+||++.+|++
T Consensus 94 ~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~ 170 (407)
T PRK00844 94 GKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPD 170 (407)
T ss_pred CCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCC
Confidence 346789999999999999973 12256999999999999999999999999999999998765444678999999988
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhC---CCCCchhhhhhhhhhhcC
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFGSEIIPAAIMEH 170 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~---~~~~~~~~d~l~~l~~~~ 170 (353)
|+|..|.|||..+... .. ...+.++++|+|+|++++|..++++.. ....++.+|+++.+++++
T Consensus 171 g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~ 236 (407)
T PRK00844 171 GRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERG 236 (407)
T ss_pred CCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccC
Confidence 9999999999754310 00 002468999999999999866666422 123567789999999999
Q ss_pred cEEEEEe------------cceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec-e----eeece
Q 018622 171 DVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-C----RIKDA 233 (353)
Q Consensus 171 ~i~~~~~------------~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-~----~i~~~ 233 (353)
++.+|.+ +|||.|+|+|++|++|+++++++.+...++.+..++++.+...+|+.+.+ + .+.++
T Consensus 237 ~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (407)
T PRK00844 237 RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDS 316 (407)
T ss_pred eEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeC
Confidence 9999976 59999999999999999999987665555666677777777777777642 2 56789
Q ss_pred EECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622 234 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 313 (353)
Q Consensus 234 ~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~ 313 (353)
+||++|.|+++.|.+|+||++|+|+++|.|++++++++ ++|+++|.|.+|+|++++.|+++
T Consensus 317 ~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~ 377 (407)
T PRK00844 317 LVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGAVVRRAILDKNVVVPPG 377 (407)
T ss_pred EEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCCEEEeeEECCCCEECCC
Confidence 99999999878899999999999999999999999988 89999999999999999999999
Q ss_pred eEEccCCCcccccCCCCceEEc-cCeEEecCCcEE
Q 018622 314 VVIVNKDDVQEADRPELGFYIR-SGITIIMEKATI 347 (353)
Q Consensus 314 ~~i~~~~~~~~~~~~~~~~~i~-~~~~vig~~~~i 347 (353)
+++.+.. ..-+.+..|. ++.++|+.|++|
T Consensus 378 ~~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 378 ATIGVDL-----EEDRRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CEECCCc-----cccccceEeccceEEEeCCCCCC
Confidence 9998741 1113356664 777777877754
No 8
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1e-36 Score=290.60 Aligned_cols=269 Identities=46% Similarity=0.821 Sum_probs=219.7
Q ss_pred CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
++++++||+++++++.+++++ ..+++|+|++||++++.++.++++.|+++++++|+++.+.+.+.+..||++.+|++
T Consensus 88 ~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 164 (361)
T TIGR02091 88 GTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDED 164 (361)
T ss_pred CCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCC
Confidence 446789999999999999963 12468999999999999999999999998888999888775444678999999888
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhcC
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIMEH 170 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~~ 170 (353)
++|..|.|||..+.... . .+ ...++++|+|+|++++|..++++... ...++.+++++.+++++
T Consensus 165 ~~v~~~~ekp~~~~~~~--------~-~~-----~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~ 230 (361)
T TIGR02091 165 GRIVDFEEKPANPPSIP--------G-MP-----DFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEG 230 (361)
T ss_pred CCEEEEEECCCCccccc--------c-cc-----cccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcC
Confidence 99999999985442100 0 00 12489999999999998656664321 23456678999999999
Q ss_pred cEEEEEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecC-CCCCCCeEEec-eeeeceEECCCcEECceEEee
Q 018622 171 DVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS-PRFLPPTKIDN-CRIKDAIISHGCFLRECTVEH 248 (353)
Q Consensus 171 ~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~-~~i~~~~~i~~-~~i~~~~ig~~~~i~~~~v~~ 248 (353)
++++|.++++|.|+|||++|++|+++++.+.+..........+.+. ..+.+++++++ +.+.++.||++|+|+++.+.+
T Consensus 231 ~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~~v~~ 310 (361)
T TIGR02091 231 SVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGATVSH 310 (361)
T ss_pred ceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCCEEEc
Confidence 9999999999999999999999999999876544333344444432 34667778875 678899999999999668899
Q ss_pred eEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622 249 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 249 ~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~ 318 (353)
|+|+++|.|+++|+|.+|+++++ +.|++++.|.+|+||+++.|++++.++|
T Consensus 311 s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 311 SVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred cEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 99999999999999999999988 8999999999999999999999998864
No 9
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-37 Score=289.56 Aligned_cols=272 Identities=26% Similarity=0.452 Sum_probs=212.0
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC-C
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM-G 94 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~-g 94 (353)
..++|||++|+++++++.. ++|+|++||+++++|+++++++|+++++.+|++..+++. ++.||++..+++ +
T Consensus 81 ~~~lGTag~l~~a~~~l~~------~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~--~~~~Gvv~~~~~~~ 152 (358)
T COG1208 81 KEPLGTAGALKNALDLLGG------DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD--PSEFGVVETDDGDG 152 (358)
T ss_pred CCcCccHHHHHHHHHhcCC------CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC--CCcCceEEecCCCc
Confidence 4489999999999999972 799999999999999999999999998889999888876 478999998744 5
Q ss_pred CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCc-EE
Q 018622 95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHD-VQ 173 (353)
Q Consensus 95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~-i~ 173 (353)
+|.+|.|||..+.. .++++|+|+|+|+|++|+ +++. ....+|..+++|.+++++. ++
T Consensus 153 ~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~~~~~~~~~l~~~~~~v~ 210 (358)
T COG1208 153 RVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFDFEEELLPALAAKGEDVY 210 (358)
T ss_pred eEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCcccchhhHHHHHHhCCCcEE
Confidence 99999999953111 257999999999999998 3332 2345666689999999987 99
Q ss_pred EEEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCc---eecCCCCCCCeEEeceeeeceEECCCcEECceEEeeeE
Q 018622 174 AYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP---FYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSI 250 (353)
Q Consensus 174 ~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~---i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ 250 (353)
+|.++++|.|+|+|++|++|+..+++......+...... +.. +.+.+|++|+. ++.|+++|.|+ .+++
T Consensus 211 ~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~----~~~i~~~~~i~----~~~~ 281 (358)
T COG1208 211 GYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGP----GAKIGPGALIG----PYTV 281 (358)
T ss_pred EEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECC----CCEECCCCEEC----CCcE
Confidence 999999999999999999999999864322211000000 111 22333333332 34444444444 3699
Q ss_pred EcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCC
Q 018622 251 VGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 330 (353)
Q Consensus 251 ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~ 330 (353)
||++|.||+++.|.+|+++++ ++|+++++|.+|+|+++|+||++. . +++ +.++.
T Consensus 282 ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~-~-----i~d-~~~g~ 335 (358)
T COG1208 282 IGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL-I-----IGD-VVIGI 335 (358)
T ss_pred ECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce-e-----ecc-eEecC
Confidence 999999999999999999999 899999999999999999999922 2 667 77887
Q ss_pred ceEEccCeEEecCCcEECCCccC
Q 018622 331 GFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 331 ~~~i~~~~~vig~~~~i~~g~vv 353 (353)
++.+..+ +++++++.++++.++
T Consensus 336 ~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 336 NSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred ceEEcCc-eEeCCCccccCcccc
Confidence 7888777 566888888877653
No 10
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-37 Score=286.77 Aligned_cols=314 Identities=22% Similarity=0.255 Sum_probs=245.6
Q ss_pred CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECC
Q 018622 15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN 92 (353)
Q Consensus 15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~ 92 (353)
|..++|||||+++|+++|.+ ..++++||++||+ +....|++|++.|...++.+|+++...++ |..||.+..++
T Consensus 74 Q~eqlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~d--P~GYGRIvr~~ 148 (460)
T COG1207 74 QEEQLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDD--PTGYGRIVRDG 148 (460)
T ss_pred ecccCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCC--CCCcceEEEcC
Confidence 46799999999999999942 2456799999999 34556889999999999999999999888 89999999998
Q ss_pred CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhc
Q 018622 93 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIME 169 (353)
Q Consensus 93 ~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~ 169 (353)
+|+|..+.|..+..+.++ ....+|+|+|+|+.+.|.++|.+...+ .+.|++|++..+..+
T Consensus 149 ~g~V~~IVE~KDA~~eek-----------------~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~ 211 (460)
T COG1207 149 NGEVTAIVEEKDASEEEK-----------------QIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNE 211 (460)
T ss_pred CCcEEEEEEcCCCCHHHh-----------------cCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhC
Confidence 999999998765443211 246899999999999888888875432 245678888777655
Q ss_pred -CcEEEEEecce--EeEcCCHHHHHHHHHhhccCC-------------CcccccCCCCceecCCCCCCC-----------
Q 018622 170 -HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSPRFLPP----------- 222 (353)
Q Consensus 170 -~~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~-------------~~~~~~~~~~~i~~~~~i~~~----------- 222 (353)
.++.++..+.+ ..-+++...+.++++.+.++. |...+++.+..+.+++.|.|+
T Consensus 212 g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~ 291 (460)
T COG1207 212 GEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGD 291 (460)
T ss_pred CCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECC
Confidence 68888888754 567888888888877665542 222233334444444444443
Q ss_pred -eEEec-eeeeceEECCCcEECc-eEEeeeEEcCCcEECCCCEEeceEEECC-ccccchhHHH-HhhcCCCcceEeCCCe
Q 018622 223 -TKIDN-CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGA-DYYQTESEIA-SLLAEGKVPIGVGRNT 297 (353)
Q Consensus 223 -~~i~~-~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~v~~~~-~~~~~~~~~~-~~~~~~~~~~~ig~~~ 297 (353)
+.|+. +.|++|.|+++|.|.. +.+.+|.|+++|.||+.++|++...++. .+++.|+|.+ +.++.+ ++++|-+
T Consensus 292 ~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~g---sKa~HLt 368 (460)
T COG1207 292 NVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKG---SKAGHLT 368 (460)
T ss_pred ceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCC---cccccee
Confidence 33432 5555666777777763 6777888999999999999998877775 5689999985 888888 8999999
Q ss_pred EEcceEeCCCCEECCCeEEccCCCcc-cccCCCCceEEccCeE-----EecCCcEECCCccC
Q 018622 298 KIRNCIIDKNVKIGKDVVIVNKDDVQ-EADRPELGFYIRSGIT-----IIMEKATIEDGMVI 353 (353)
Q Consensus 298 ~i~~~iig~~~~Ig~~~~i~~~~~~~-~~~~~~~~~~i~~~~~-----vig~~~~i~~g~vv 353 (353)
+|.++.||+++.||++++.+|+++.. ..+.||++++|+++.. .||+++.|++||+|
T Consensus 369 YlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 369 YLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred eeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 99999999999999999999999865 6789999999998854 38999999999986
No 11
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=2.4e-35 Score=281.90 Aligned_cols=257 Identities=23% Similarity=0.412 Sum_probs=207.3
Q ss_pred cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcc-eEEEECCCCCee
Q 018622 19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDY-GLVKIDNMGRIA 97 (353)
Q Consensus 19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~-g~v~~d~~g~V~ 97 (353)
.|+++++++|++++++ ..+++|+|++||+++++||.+++++|+++++++|+++.+++++.+..| +++..|++|++.
T Consensus 96 tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~ 172 (369)
T TIGR02092 96 EGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVK 172 (369)
T ss_pred cChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEE
Confidence 3667779999999852 124789999999999999999999999999999999988763235678 456677778888
Q ss_pred EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CCchhhhhhhhhhhcCcEEEEE
Q 018622 98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SNDFGSEIIPAAIMEHDVQAYI 176 (353)
Q Consensus 98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~~~~~d~l~~l~~~~~i~~~~ 176 (353)
.|.+++..+. ..++++|+|+|++++|..++++..+. ..++..++++.++++.++++|.
T Consensus 173 ~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~ 231 (369)
T TIGR02092 173 SIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYE 231 (369)
T ss_pred eccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEe
Confidence 7754332211 24678999999999886666543322 2244568899888888999999
Q ss_pred ecceEeEcCCHHHHHHHHHhhccCCCccccc-CCCCceecCCCCCCCeEEec-eeeeceEECCCcEECceEEeeeEEcCC
Q 018622 177 FRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLRECTVEHSIVGER 254 (353)
Q Consensus 177 ~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~-~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~ 254 (353)
++++|.|+|||++|++|++++++.+.....+ ....+++....+.+|++|+. +.|.+|+||++|+|+ +.|.+|+|+++
T Consensus 232 ~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~-~~v~~s~i~~~ 310 (369)
T TIGR02092 232 YTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIE-GKVENSILSRG 310 (369)
T ss_pred cCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEe-eEEeCCEECCC
Confidence 9999999999999999999999875433222 22335555555678999975 888999999999998 67899999999
Q ss_pred cEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622 255 SRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 255 ~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~ 319 (353)
|.|+++|.|.+++++++ +.|++++.+.+|+||+++.||+++.+.+.
T Consensus 311 ~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 311 VHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred CEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 99999999999999998 89999999999999999999999999765
No 12
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.8e-34 Score=284.77 Aligned_cols=312 Identities=18% Similarity=0.200 Sum_probs=220.4
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
++++||+++|+++++++.+ ..+++|+|++||. +...+++++++.|++.+++++++..+..+ +..||.+..|++
T Consensus 78 ~~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~--p~~yg~~~~~~~ 152 (482)
T PRK14352 78 DEQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDD--PTGYGRILRDQD 152 (482)
T ss_pred CCCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCC--CCCCCEEEECCC
Confidence 5678999999999998852 2346799999998 34678999999999888888888777655 678999988888
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcC
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEH 170 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~ 170 (353)
++|.+|.|||.....+ ....++++|+|+|++++|..++++.... ...+.+|+++.+++++
T Consensus 153 g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g 215 (482)
T PRK14352 153 GEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAG 215 (482)
T ss_pred CCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCC
Confidence 9999999998754311 0135789999999999997766543321 2234679999999875
Q ss_pred -cEEEEEecceEeEcCCHHHH------HHHHHhhccCC---------Ccccc------------cCCCCceecCCCCCCC
Q 018622 171 -DVQAYIFRDYWEDIGTIKSF------YEANMALTKES---------PAFHF------------YDPKTPFYTSPRFLPP 222 (353)
Q Consensus 171 -~i~~~~~~g~w~dIgtp~~y------~~a~~~ll~~~---------~~~~~------------~~~~~~i~~~~~i~~~ 222 (353)
++.+|.++++|.|+|+++.| ..+++.++... +...+ +++.+.+.+.+.|+++
T Consensus 216 ~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~ 295 (482)
T PRK14352 216 HRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGED 295 (482)
T ss_pred CeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCC
Confidence 89999999999999999888 44555444331 00001 1122222233333344
Q ss_pred eEEec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCc-cccchhHH-HHhhcCCCcceEeCCCeEE
Q 018622 223 TKIDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASLLAEGKVPIGVGRNTKI 299 (353)
Q Consensus 223 ~~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~-~~~~~~~~-~~~~~~~~~~~~ig~~~~i 299 (353)
+.|+. +.|++++||++|.|+++.+.+++|++++.||+++.+...++++.+ .++.+++. .++++++ +.|++.+.+
T Consensus 296 ~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~---~~i~~~~~i 372 (482)
T PRK14352 296 AVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRG---TKVPHLTYV 372 (482)
T ss_pred CEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCC---cEEccCcee
Confidence 44432 445556666666666555667888888888888888765555543 34555543 3566666 788888888
Q ss_pred cceEeCCCCEECCCeEEccC-------CCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 300 RNCIIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 300 ~~~iig~~~~Ig~~~~i~~~-------~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
.+++||++|.||+++++.+. ..+++.+++|.++.|..+ +.||++++|++|++|
T Consensus 373 ~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 373 GDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred cccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 89999999999999988764 335555566666666555 356999999999875
No 13
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.5e-34 Score=281.29 Aligned_cols=315 Identities=20% Similarity=0.262 Sum_probs=219.4
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
+.++||+++|+++++++++ .+++|+|++||+ +.+.++++++++|.+++++++++..+.++ +..||.+.+|++
T Consensus 76 ~~~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~--~~~~g~v~~d~~ 149 (459)
T PRK14355 76 EEQLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLEN--PFGYGRIVRDAD 149 (459)
T ss_pred CCCCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcCCEEEEcCC
Confidence 5578999999999999963 246899999998 55788999999999888889988877655 567999999888
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcC
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEH 170 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~ 170 (353)
++|..|.|||.....+ ..++++++|+|+|++++|...+++..+. ...+.+|+++.+++++
T Consensus 150 g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g 212 (459)
T PRK14355 150 GRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEG 212 (459)
T ss_pred CCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCC
Confidence 9999999987432110 0136889999999999875566543321 2234678999999875
Q ss_pred -cEEEEEecce--EeEcCCHHHHHHHHHhhccCCC------cccccCCCC-ceecCCCCCCCeEEec-eeee-ceEECCC
Q 018622 171 -DVQAYIFRDY--WEDIGTIKSFYEANMALTKESP------AFHFYDPKT-PFYTSPRFLPPTKIDN-CRIK-DAIISHG 238 (353)
Q Consensus 171 -~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~~------~~~~~~~~~-~i~~~~~i~~~~~i~~-~~i~-~~~ig~~ 238 (353)
++.+|+++++ |+|+|+|++|++|++.++.... ...++++.. .+.+++.+++++.|+. +.|. ++.||++
T Consensus 213 ~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~ 292 (459)
T PRK14355 213 LRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEG 292 (459)
T ss_pred CeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCC
Confidence 7999999987 9999999999999875554311 111344443 3556666666666653 5554 5888888
Q ss_pred cEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCC--------cceEeCCC------eEEcc
Q 018622 239 CFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGK--------VPIGVGRN------TKIRN 301 (353)
Q Consensus 239 ~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~--------~~~~ig~~------~~i~~ 301 (353)
|.|+ ++.|.+|+||++|+|+.+|+|.++++.++..++....+ .+.++++. -.+.||.+ +++.+
T Consensus 293 ~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~ 372 (459)
T PRK14355 293 CTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGD 372 (459)
T ss_pred CEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCceeeeeccccC
Confidence 8888 67788888888888888888888777666555444322 23333330 00222222 23345
Q ss_pred eEeCCCCEECCCeEEccCCCcc-cccCCCCceEEccCe-----EEecCCcEECCCccC
Q 018622 302 CIIDKNVKIGKDVVIVNKDDVQ-EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 353 (353)
Q Consensus 302 ~iig~~~~Ig~~~~i~~~~~~~-~~~~~~~~~~i~~~~-----~vig~~~~i~~g~vv 353 (353)
+.||++|.||+++++.+.++.. ..+.||+++.|+.++ +.||++++|++||+|
T Consensus 373 ~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 373 ATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred CEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 7888888888888776543322 234455555554443 346899999988875
No 14
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.4e-33 Score=266.48 Aligned_cols=249 Identities=19% Similarity=0.316 Sum_probs=183.9
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
++++||+++|+++++++++ ++|++++||++++.++.+++++|+++++++|+++.+.++ +..||++.+|++++
T Consensus 80 ~~~~G~~~al~~a~~~l~~------~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~--~~~~g~~~~~~~~~ 151 (353)
T TIGR01208 80 GEPLGLAHAVYTARDFLGD------DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD--PTAFGVAVLEDGKR 151 (353)
T ss_pred CCCCCHHHHHHHHHHhcCC------CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC--hhhCeEEEEcCCCc
Confidence 4578999999999999862 689999999999999999999999999999999988765 57899998876678
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CCchhhhhhhhhhhc-CcE
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIME-HDV 172 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~~~~~d~l~~l~~~-~~i 172 (353)
|.+|.|||..+. +.++++|+|+|++.+++ .+++..+. ...+..++++.++++ .++
T Consensus 152 v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~l~d~l~~l~~~g~~v 209 (353)
T TIGR01208 152 ILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELEITDAIQWLIEKGYKV 209 (353)
T ss_pred EEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEEHHHHHHHHHHcCCeE
Confidence 999999987542 36889999999998776 45443321 122356899999877 479
Q ss_pred EEEEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEEeeeE
Q 018622 173 QAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSI 250 (353)
Q Consensus 173 ~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ 250 (353)
.+|.++++|.|+|||++|++|++.++.+.. ..+. .+.+++.+.+|++|+. +.|.+++|+++|.|+ ++.|.+++
T Consensus 210 ~~~~~~g~w~digt~~dl~~a~~~ll~~~~-~~~~----~i~~~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~ 284 (353)
T TIGR01208 210 GGSKVTGWWKDTGKPEDLLDANRLILDEVE-REVQ----GVDDESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSY 284 (353)
T ss_pred EEEEeCcEEEeCCCHHHHHHHHHHHHhhcc-cccC----CcCCCCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcE
Confidence 999999999999999999999999997432 1111 1344455556666653 555555555555555 45555666
Q ss_pred EcCCcEECCCCEEe-----ceEEECCccccchhHHHHhhcCCCcceEeCCC-eEEcceEeCCCCEECCCeEEcc
Q 018622 251 VGERSRLDYGVELK-----DTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 251 ig~~~~ig~~~~i~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~-~~i~~~iig~~~~Ig~~~~i~~ 318 (353)
|+++|+||++|+|+ +++++.+ +.|+++ +++.++++++++.|++++.+.+
T Consensus 285 i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 285 IGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred ECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCCEECCCccccc
Confidence 66666666666665 3443333 566666 3666777777777777776653
No 15
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.8e-33 Score=273.40 Aligned_cols=314 Identities=17% Similarity=0.224 Sum_probs=203.3
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
++++||+++++.++++++. .+++|+|++||+ +.+.++++++++|+++++++|+++.++++ +++||++.+|++
T Consensus 79 ~~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~--~~~yG~v~~d~~ 152 (481)
T PRK14358 79 EQQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPD--ATGYGRIVRGAD 152 (481)
T ss_pred CCcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCC--CCCceEEEECCC
Confidence 5678999999999998852 235699999998 55778999999999999999999888775 567999999988
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhC---CCCCchhhhhhhhhhhcC
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFGSEIIPAAIMEH 170 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~---~~~~~~~~d~l~~l~~~~ 170 (353)
|+|.+|.|||..+..+ ...+++++|+|+|++++++ +++... .....+++|+++.+++++
T Consensus 153 g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~~ge~~l~d~i~~~~~~g 214 (481)
T PRK14358 153 GAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPE-LARRIGNDNKAGEYYLTDLLGLYRAGG 214 (481)
T ss_pred CCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHH-HHHhcCCCccCCeEEHHHHHHHHHHCC
Confidence 9999999998743211 0135789999999966533 333221 111233578999998875
Q ss_pred -cEEEEEecceEeEcCCHHHHHHHHHh-hccCCCc-------ccccCCCCc-eecCCCCCCCeEEec-eeee-ceEECCC
Q 018622 171 -DVQAYIFRDYWEDIGTIKSFYEANMA-LTKESPA-------FHFYDPKTP-FYTSPRFLPPTKIDN-CRIK-DAIISHG 238 (353)
Q Consensus 171 -~i~~~~~~g~w~dIgtp~~y~~a~~~-ll~~~~~-------~~~~~~~~~-i~~~~~i~~~~~i~~-~~i~-~~~ig~~ 238 (353)
++.+|.++++|..++.-..|+.++++ +++.... ..+.+|... +.+.+.|++++.|.+ +.|. ++.||++
T Consensus 215 ~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~ 294 (481)
T PRK14358 215 AQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADG 294 (481)
T ss_pred CeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCC
Confidence 69999999999998888777666654 4432110 011122211 123333444444432 3343 3556666
Q ss_pred cEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHH--HhhcCCCc--------------ceEeCCCeEEcc
Q 018622 239 CFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIA--SLLAEGKV--------------PIGVGRNTKIRN 301 (353)
Q Consensus 239 ~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~--~~~~~~~~--------------~~~ig~~~~i~~ 301 (353)
|.|+ ++.|.+|+|+++|.|+++++|.++++..+..++..+.+. +.++++.. .+.+|+.+.+.+
T Consensus 295 ~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~ 374 (481)
T PRK14358 295 VTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGD 374 (481)
T ss_pred CEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEECC
Confidence 6666 455666666666666666666655555544444444331 33333300 034444455567
Q ss_pred eEeCCCCEECCCeEEccCCCcc-cccCCCCceEEccCe-----EEecCCcEECCCccC
Q 018622 302 CIIDKNVKIGKDVVIVNKDDVQ-EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 353 (353)
Q Consensus 302 ~iig~~~~Ig~~~~i~~~~~~~-~~~~~~~~~~i~~~~-----~vig~~~~i~~g~vv 353 (353)
++||++|.||.++++.+..+.. ..+.||+++.|+.++ +.||++++|++|++|
T Consensus 375 ~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 375 VTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred eEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 8899999999999888753321 234555555554443 247888888888864
No 16
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.1e-33 Score=271.50 Aligned_cols=307 Identities=19% Similarity=0.237 Sum_probs=212.8
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
+.++||+++|+.++.++.+ +++|++++||. +.+.++.++++.|.+.+ +++++.+.++ +.+||++.. ++
T Consensus 77 ~~~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~--~~~yG~v~~-~~ 146 (456)
T PRK09451 77 AEQLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDN--PTGYGRITR-EN 146 (456)
T ss_pred CCCCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCC--CCCceEEEe-cC
Confidence 4578999999999998852 37899999998 56788999998886544 4566666554 577999855 57
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhc-
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIME- 169 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~- 169 (353)
++|.+|.|||.....+ ..++++++|+|+|+++.|..++++..+. ...+.+|+++.++++
T Consensus 147 g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g 209 (456)
T PRK09451 147 GKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEG 209 (456)
T ss_pred CeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCC
Confidence 8999999998643210 0135899999999999997677654321 233567999999988
Q ss_pred CcEEEEE------ecce--EeEcCCHHHHHHHHH--hhccC-----CCc-cc-----------ccCCCCceecCCCCCCC
Q 018622 170 HDVQAYI------FRDY--WEDIGTIKSFYEANM--ALTKE-----SPA-FH-----------FYDPKTPFYTSPRFLPP 222 (353)
Q Consensus 170 ~~i~~~~------~~g~--w~dIgtp~~y~~a~~--~ll~~-----~~~-~~-----------~~~~~~~i~~~~~i~~~ 222 (353)
.++.+|. ++|+ |.|++++++|+++++ .++.. .|. .. .+++...+.+.+.++++
T Consensus 210 ~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~ 289 (456)
T PRK09451 210 REIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNR 289 (456)
T ss_pred CeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCC
Confidence 5899986 4666 788999999999874 23221 111 10 22334444444555666
Q ss_pred eEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEe-ceEEECCccccchhHH-HHhhcCCCcceEeCCCeE
Q 018622 223 TKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTK 298 (353)
Q Consensus 223 ~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~-~~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~ 298 (353)
+.|+. +.|+++.|+++|.|+ ++.+.+|+||++|.|++++.|. ++++.++..++.++++ .+.++++ +.+++.+.
T Consensus 290 ~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~---~~~~~~~~ 366 (456)
T PRK09451 290 VKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKG---SKAGHLTY 366 (456)
T ss_pred CEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCC---CccCcccc
Confidence 66653 666677778888887 6777777777788887777776 3444444445555555 3555555 56677777
Q ss_pred EcceEeCCCCEECCCeEEccCCC-------cccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 299 IRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 299 i~~~iig~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
+.+|.||++|.||+++++.+..+ +++.+.+|.++.|..++ .||++++|++|++|
T Consensus 367 ~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~-~ig~~~~i~~gs~v 427 (456)
T PRK09451 367 LGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPV-TVGKGATIGAGTTV 427 (456)
T ss_pred ccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCc-EECCCCEECCCCEE
Confidence 77889999999999998876433 44555555555554442 46888999888875
No 17
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=8.7e-32 Score=264.00 Aligned_cols=307 Identities=19% Similarity=0.222 Sum_probs=195.5
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG 94 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 94 (353)
.++||+++++++++++++ +++|++++||. +...++++++++|.+. .+++++.+.++ +..|+.+..|+++
T Consensus 73 ~~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~~--~~~~g~v~~d~~g 143 (451)
T TIGR01173 73 EQLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLPD--PTGYGRIIRENDG 143 (451)
T ss_pred CCCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecCC--CCCCCEEEEcCCC
Confidence 357999999999999862 36899999998 4567899999998664 36777776654 5679999998889
Q ss_pred CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcC-
Q 018622 95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEH- 170 (353)
Q Consensus 95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~- 170 (353)
+|..|.|||...... ....++++|+|+|++++|..+++..... ...+..++++.+++++
T Consensus 144 ~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~ 206 (451)
T TIGR01173 144 KVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGE 206 (451)
T ss_pred CEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCC
Confidence 999999997643210 0125789999999999976666553321 1233568899988774
Q ss_pred cEEEEEecce--EeEcCCHHHHHHHHHhhccCCCc--------c-----------------cccCCCCceecCCCCCCCe
Q 018622 171 DVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA--------F-----------------HFYDPKTPFYTSPRFLPPT 223 (353)
Q Consensus 171 ~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~~~--------~-----------------~~~~~~~~i~~~~~i~~~~ 223 (353)
++.+|.++++ |.++++|++|.+++..+..+.+. + ..+++.+.+.+.+.|++++
T Consensus 207 ~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 286 (451)
T TIGR01173 207 TVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDV 286 (451)
T ss_pred eEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCC
Confidence 7999999987 99999999998886544432100 0 0111112222222223333
Q ss_pred EEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEE-CCccccchhHHH-HhhcCCCcceEeCCCeEE
Q 018622 224 KIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVML-GADYYQTESEIA-SLLAEGKVPIGVGRNTKI 299 (353)
Q Consensus 224 ~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~-~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~i 299 (353)
.|+. +.++++.|+++|.|+ ++.+.+++||++|.||++++|.+..++ ++..++..++.. +.++++ +.|++.+.+
T Consensus 287 ~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~---~~i~~~~~i 363 (451)
T TIGR01173 287 VIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG---SKAGHLSYL 363 (451)
T ss_pred EECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC---cEecceeeE
Confidence 3322 444455555555555 455555566666666665555542222 233344433332 334444 455555556
Q ss_pred cceEeCCCCEECCCeEEccC-------CCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 300 RNCIIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 300 ~~~iig~~~~Ig~~~~i~~~-------~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
.+|.||+++.||+++++.+. ..+++.+.+|.++.|..+ +.||++++|++|++|
T Consensus 364 ~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 364 GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTV 423 (451)
T ss_pred eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC-cEECCCCEEccCCEE
Confidence 66888888888888888763 234444555555555444 357999999999875
No 18
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.7e-31 Score=256.70 Aligned_cols=296 Identities=20% Similarity=0.271 Sum_probs=215.5
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCe
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 96 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 96 (353)
.++||++++++++. ..++|++++||..+. ..+.++.+.+.++++++++.+.++ +..||.+..| +|+|
T Consensus 78 ~~~gt~~al~~~~~--------~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~--~~~~g~v~~d-~g~v 144 (430)
T PRK14359 78 NYPGTGGALMGIEP--------KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD--PKGYGRVVIE-NGQV 144 (430)
T ss_pred cCCCcHHHHhhccc--------CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC--CccCcEEEEc-CCeE
Confidence 46799999987432 137899999998432 234556666677888888887765 5679988875 6899
Q ss_pred eEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-CcE
Q 018622 97 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-HDV 172 (353)
Q Consensus 97 ~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-~~i 172 (353)
..+.|+|...... ...+++++|+|+|++++|..+++.... ....+.+|+++.++++ .++
T Consensus 145 ~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v 207 (430)
T PRK14359 145 KKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETI 207 (430)
T ss_pred EEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeE
Confidence 9999987542210 013578999999999999876554321 1223467888888876 689
Q ss_pred EEEEec-ceEeEcCCHHHHHHHHHhhccCCC-c------------ccccCCCCceecCCCCCCCeEEec-eeeeceEECC
Q 018622 173 QAYIFR-DYWEDIGTIKSFYEANMALTKESP-A------------FHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIISH 237 (353)
Q Consensus 173 ~~~~~~-g~w~dIgtp~~y~~a~~~ll~~~~-~------------~~~~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~ 237 (353)
.+|.++ ++|.|+++|++|++|+..+..+.. . -.++.++..+.+.+.+++++.|.+ +.++++.|++
T Consensus 208 ~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~ 287 (430)
T PRK14359 208 KAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKA 287 (430)
T ss_pred EEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECC
Confidence 999997 589999999999999865543311 0 112345556666677788888864 7788999999
Q ss_pred CcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHH-HhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEE
Q 018622 238 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 316 (353)
Q Consensus 238 ~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i 316 (353)
+|.|+++.+.+|+||++++|+++++|+++.+.++. +++ +++ ++ ++||+++.|.+|+||++|.||+++++
T Consensus 288 ~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~------~i~~~~~-~~---~~i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 288 HSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFV------ETKNAKL-NG---VKAGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred CCEEeccEEeCCEECCCCEECCCcEEeccEEcCcE------EEcccEe-cc---ccccccccccCCEECCCCEECCCceE
Confidence 99998888899999999999999998876655542 222 233 44 79999999999999999999999999
Q ss_pred ccCCC-------cccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 317 VNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 317 ~~~~~-------~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
.+... +++.+.+|.++.|..+ +.||++++|++|++|
T Consensus 358 ~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 400 (430)
T PRK14359 358 CNYDGKKKHKTIIGKNVFIGSDTQLVAP-VNIEDNVLIAAGSTV 400 (430)
T ss_pred ccccCccCcCCEECCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 87633 3444444444444444 347999999999875
No 19
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.9e-31 Score=259.00 Aligned_cols=310 Identities=17% Similarity=0.210 Sum_probs=197.6
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
+.++||+++|+.+++++++ .+.++|++++||+ +...+++++++.|+ ++++++++.+.++ +..||++.. ++
T Consensus 77 ~~~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~--~~~~g~v~~-~~ 148 (456)
T PRK14356 77 EQQLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPD--PGAYGRVVR-RN 148 (456)
T ss_pred CCCCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCC--CCCceEEEE-cC
Confidence 4578999999999999963 2347899999998 44567899998875 6678888887766 678998877 57
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME- 169 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~- 169 (353)
|+|..|.|||+...... . ..+.++++|+|+|++++|..+++.... ....+++++++.+++.
T Consensus 149 g~V~~~~ek~~~~~~~~----------~-----~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g 213 (456)
T PRK14356 149 GHVAAIVEAKDYDEALH----------G-----PETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEG 213 (456)
T ss_pred CeEEEEEECCCCChHHh----------h-----hhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCC
Confidence 89999999986421100 0 014688999999999998766654321 1223457888888765
Q ss_pred CcEEEEEecc--eEeEcCCHHHHHHHHHhhccCCCccc--------------ccCCCCceecC------------CCCCC
Q 018622 170 HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESPAFH--------------FYDPKTPFYTS------------PRFLP 221 (353)
Q Consensus 170 ~~i~~~~~~g--~w~dIgtp~~y~~a~~~ll~~~~~~~--------------~~~~~~~i~~~------------~~i~~ 221 (353)
.++.+|.+.+ .|++++||++|.+++..+..+.. .. ++++...+.++ +.+++
T Consensus 214 ~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~-~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~ 292 (456)
T PRK14356 214 MNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIV-EKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIAR 292 (456)
T ss_pred CeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHH-HHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECC
Confidence 4799999866 57999999999998866654311 11 11122122211 22233
Q ss_pred CeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEec-eEEECCccccchhHHH-HhhcCCCcceEeCCCe
Q 018622 222 PTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEIA-SLLAEGKVPIGVGRNT 297 (353)
Q Consensus 222 ~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~-~v~~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~ 297 (353)
++.|+. +.|++++|+++|+|+ ++.+.+++||++|.||++++|.+ +++.++..++..++++ ++++++ +.+++++
T Consensus 293 ~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~---~~i~~~~ 369 (456)
T PRK14356 293 GAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKG---AKANHLT 369 (456)
T ss_pred CCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCC---cEecccc
Confidence 333322 444455555555555 45555555555555555555553 3333333344444442 444455 5666666
Q ss_pred EEcceEeCCCCEECCCeEEccCC-------CcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 298 KIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 298 ~i~~~iig~~~~Ig~~~~i~~~~-------~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
.+.+|+||+++.||+++.+.+.. .+++.++++.++.|..+ +.||++++|++|++|
T Consensus 370 ~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~v 431 (456)
T PRK14356 370 YLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSVI 431 (456)
T ss_pred cccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence 66678888888888888765532 23344444444554444 347999999998875
No 20
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.1e-32 Score=236.94 Aligned_cols=250 Identities=19% Similarity=0.276 Sum_probs=197.0
Q ss_pred CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEEC-C
Q 018622 14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID-N 92 (353)
Q Consensus 14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d-~ 92 (353)
+...++||||+|++-++.|- ....+.|+|+|+|+.+++++++|++.|+.++..+||+..++..+.+++||.+.-| .
T Consensus 84 ~E~~plGtaGgLyhFrdqIl---~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~ 160 (407)
T KOG1460|consen 84 REDNPLGTAGGLYHFRDQIL---AGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPS 160 (407)
T ss_pred ccCCCCCcccceeehhhHHh---cCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCC
Confidence 34679999999999999886 3456889999999999999999999999999999999999988778999999988 4
Q ss_pred CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHH---hh-------------CCCC-
Q 018622 93 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR---WR-------------YPTS- 155 (353)
Q Consensus 93 ~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~---~~-------------~~~~- 155 (353)
.++|+++.|||...- ++.+++|+|+|++++|+.+-+ +. .+..
T Consensus 161 t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~ 219 (407)
T KOG1460|consen 161 TGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPA 219 (407)
T ss_pred cCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCcc
Confidence 699999999998642 589999999999999964321 10 0111
Q ss_pred --CchhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhccCCCcc--c-cc-CCC--CceecCCCCCCCeEEec
Q 018622 156 --NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAF--H-FY-DPK--TPFYTSPRFLPPTKIDN 227 (353)
Q Consensus 156 --~~~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~--~-~~-~~~--~~i~~~~~i~~~~~i~~ 227 (353)
..+.+|+|+.++..+++++|..+++|..|.|+..-+.|++.+|...... . +- .|. +.|.+++.|+|.
T Consensus 220 d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPs----- 294 (407)
T KOG1460|consen 220 DFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPS----- 294 (407)
T ss_pred ceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCc-----
Confidence 2345789999999999999999999999999999999998888642111 0 11 111 223333333333
Q ss_pred eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCC
Q 018622 228 CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN 307 (353)
Q Consensus 228 ~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~ 307 (353)
+.+.+.+.|| .|+.||.+++||+|++|+.|+++++ +.|.+|+.+.+|+||.+
T Consensus 295 -----akvhptAkiG----PNVSIga~vrvg~GvRl~~sIIl~d-------------------~ei~enavVl~sIigw~ 346 (407)
T KOG1460|consen 295 -----AKVHPTAKIG----PNVSIGANVRVGPGVRLRESIILDD-------------------AEIEENAVVLHSIIGWK 346 (407)
T ss_pred -----ceeCCccccC----CCceecCCceecCCceeeeeeeccC-------------------cEeeccceEEeeeeccc
Confidence 3344445555 3578888999999999999999998 89999999999999999
Q ss_pred CEECCCeEEccCC
Q 018622 308 VKIGKDVVIVNKD 320 (353)
Q Consensus 308 ~~Ig~~~~i~~~~ 320 (353)
+.||.++.+.+..
T Consensus 347 s~iGrWaRVe~~p 359 (407)
T KOG1460|consen 347 SSIGRWARVEGIP 359 (407)
T ss_pred ccccceeeecccc
Confidence 9999999888644
No 21
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.98 E-value=8.8e-31 Score=256.65 Aligned_cols=306 Identities=22% Similarity=0.225 Sum_probs=192.1
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
+.++||+++++++++++++ +++|++++||. +.+.+++++++.|+++++++|+++.+.++ +..||++..| +
T Consensus 70 ~~~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~--~~~~g~v~~d-~ 141 (448)
T PRK14357 70 EEQLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLED--PTGYGRIIRD-G 141 (448)
T ss_pred CCCCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCC--CCCcEEEEEc-C
Confidence 5678999999999999862 47899999997 56788999999999999999999988765 6789999887 6
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcC
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEH 170 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~ 170 (353)
+++ .+.|||..+... ...+++++|+|+|++++|..++++.... ...+..|+++.+ .
T Consensus 142 g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~ 200 (448)
T PRK14357 142 GKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---E 200 (448)
T ss_pred CeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---h
Confidence 788 788876533210 0135889999999999986666543221 112345777766 3
Q ss_pred cEEEEEecce--EeEcCCHHHHHHHHHhhccCC------Cccc-------ccCCCCceecCCCCCCCeE-----------
Q 018622 171 DVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFH-------FYDPKTPFYTSPRFLPPTK----------- 224 (353)
Q Consensus 171 ~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~------~~~~-------~~~~~~~i~~~~~i~~~~~----------- 224 (353)
++.+|.+.++ |.++++|++|..+...+.... .... ++++...|..++.+.|+++
T Consensus 201 ~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~ 280 (448)
T PRK14357 201 KVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDC 280 (448)
T ss_pred heeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCc
Confidence 5889999898 667779999988765442110 0001 1222222333333333222
Q ss_pred -Eec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEE-ECCccccchhHHH-HhhcCCCcceEeCCCeEEc
Q 018622 225 -IDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVM-LGADYYQTESEIA-SLLAEGKVPIGVGRNTKIR 300 (353)
Q Consensus 225 -i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~-~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~i~ 300 (353)
|+. +.+.+|+||++|+|..+.+.+|+|++++.|++++.|+..++ .++..++..+.++ +.++++ +.+++.+.+.
T Consensus 281 ~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~---~~~~~~~~~~ 357 (448)
T PRK14357 281 EIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGEN---TKAQHLTYLG 357 (448)
T ss_pred EECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCC---cCcccccccc
Confidence 221 33334455555555444455666666666666666654333 3333334333332 334444 4555555566
Q ss_pred ceEeCCCCEECCCeEEccCCCcc-cccCCCCceEEccCe-----EEecCCcEECCCccC
Q 018622 301 NCIIDKNVKIGKDVVIVNKDDVQ-EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 353 (353)
Q Consensus 301 ~~iig~~~~Ig~~~~i~~~~~~~-~~~~~~~~~~i~~~~-----~vig~~~~i~~g~vv 353 (353)
+++||++|.||+++++.+..+.. ..++|+++++|+.++ +.||+++.|++|++|
T Consensus 358 ~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 358 DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred CcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 77888888888888776533211 234445444444443 346888888888875
No 22
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.98 E-value=1.6e-30 Score=254.72 Aligned_cols=305 Identities=18% Similarity=0.199 Sum_probs=198.7
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-EE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
+.++||+++++.++.+++. .+++|++++||. +. ..+++++++ |.++++++++++.+..+ +..||.+.. ++
T Consensus 79 ~~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~~~~~~--~~~~g~~~~-~~ 150 (446)
T PRK14353 79 KERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLGFRAAD--PTGYGRLIV-KG 150 (446)
T ss_pred CCCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEEEEeCC--CCcceEEEE-CC
Confidence 4567999999999998852 137899999998 43 456788887 44567788888777654 678998887 56
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME- 169 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~- 169 (353)
++|..+.|||...... ....++++|+|+|+++.|..++++... ....+..++++.+++.
T Consensus 151 g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g 213 (446)
T PRK14353 151 GRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEG 213 (446)
T ss_pred CeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCC
Confidence 8999999998642210 013578999999999877556654322 1123456888888876
Q ss_pred CcEEEEEec-ceEeEcCCHHHHHHHHHhhccC--------C-----CcccccCCCCceecCCCCCCCeEEeceeeeceEE
Q 018622 170 HDVQAYIFR-DYWEDIGTIKSFYEANMALTKE--------S-----PAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII 235 (353)
Q Consensus 170 ~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll~~--------~-----~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~i 235 (353)
.++.++..+ +.|.||++|++|.+|+..+..+ . +...++++...|.+++.+++++.|++ ++.|
T Consensus 214 ~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~----~~~i 289 (446)
T PRK14353 214 LRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGP----GVTV 289 (446)
T ss_pred CeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECC----CCEE
Confidence 469999986 4699999999999888544322 0 11112223333333334444333332 4555
Q ss_pred CCCcEEC-ceEEeeeEEcCCcEECCCCEEe-ceEEECCccccchhHHH-HhhcCCCcceEeCCCeEEcceEeCCCCEECC
Q 018622 236 SHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 312 (353)
Q Consensus 236 g~~~~i~-~~~v~~~~ig~~~~ig~~~~i~-~~v~~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~ 312 (353)
|++|.|+ ++.+.+++||++|+||++|.|. ++++.++..++..+++. ++++++ +.+++++.+.+++||++|.||+
T Consensus 290 g~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i~~~~~i~~~~ig~~~~Ig~ 366 (446)
T PRK14353 290 ASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG---AKVNHLTYIGDATIGAGANIGA 366 (446)
T ss_pred CCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---CEECCeeEEcCcEEcCCcEECC
Confidence 5555555 4555556666666666666665 33333333333333331 333333 6777777888899999999999
Q ss_pred CeEEcc-------CCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 313 DVVIVN-------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 313 ~~~i~~-------~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
++++.+ +..+++.++++.++.|..+ +.||++++|++|++|
T Consensus 367 ~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 367 GTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred ceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 988754 2345566666666666655 346999999998875
No 23
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=5e-30 Score=252.03 Aligned_cols=311 Identities=22% Similarity=0.263 Sum_probs=205.2
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
..++||+++++++++++++ .++.|++++||. +.+.++++++++|++.++++|+++.+.++ +..|+.+..|++
T Consensus 73 ~~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~--~~~~g~v~~d~~ 146 (458)
T PRK14354 73 EEQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAEN--PTGYGRIIRNEN 146 (458)
T ss_pred CCCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCC--CCCceEEEEcCC
Confidence 4468999999999999862 136799999996 45678999999998888889988877654 567998888888
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhc-
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIME- 169 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~- 169 (353)
++|..|.|||...... ....++++|+|+|+++.|...+++.... ...+.+++++.++++
T Consensus 147 ~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g 209 (458)
T PRK14354 147 GEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEG 209 (458)
T ss_pred CCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCC
Confidence 9999999987531100 0135789999999998665565543221 122356888888866
Q ss_pred CcEEEEEecce--EeEcCCHHHHHHHHHhhccCC------CcccccCC-------CCceecC------------CCCCCC
Q 018622 170 HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP-------KTPFYTS------------PRFLPP 222 (353)
Q Consensus 170 ~~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~------~~~~~~~~-------~~~i~~~------------~~i~~~ 222 (353)
.++.+|.++++ |+++.++++|.+|+..+..+. +...++++ ...+.++ +.|+++
T Consensus 210 ~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~ 289 (458)
T PRK14354 210 EKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGED 289 (458)
T ss_pred CeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCC
Confidence 57999999876 456779999988875432210 11111222 2222222 222333
Q ss_pred eEEec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEec-eEEECCccccchhHH-HHhhcCCCcceEeCCCeEE
Q 018622 223 TKIDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKI 299 (353)
Q Consensus 223 ~~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~-~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~i 299 (353)
+.|+. +.|.+++|+++|.|+++++.+++||++|.||.+|.|.. +++.++..++..+.+ .+.++++ +.+++.+.+
T Consensus 290 ~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~---~~i~~~~~~ 366 (458)
T PRK14354 290 CVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEG---TKVSHLTYI 366 (458)
T ss_pred CEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCC---CEecceeee
Confidence 33322 44445666777777655666777777777777777774 333333334444444 2444555 566666677
Q ss_pred cceEeCCCCEECCCeEEccCC-------CcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 300 RNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 300 ~~~iig~~~~Ig~~~~i~~~~-------~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
.+++||+++.||+++.+.+.+ .+++.++++.++.|..+ +.||++++||+|++|
T Consensus 367 ~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v 426 (458)
T PRK14354 367 GDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTI 426 (458)
T ss_pred cCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCC-cEECCCCEECCCCEE
Confidence 778888888888888876632 23455555555666555 357999999999875
No 24
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=3e-29 Score=246.00 Aligned_cols=308 Identities=19% Similarity=0.231 Sum_probs=213.1
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
+.++||+++++++++++++ .+++|+|++||. +...+++++++.|++.++++++++.+.++ +..||.+.+|++
T Consensus 74 ~~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~~ 147 (450)
T PRK14360 74 QPQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPN--PKGYGRVFCDGN 147 (450)
T ss_pred CCcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCC--CCCccEEEECCC
Confidence 3467999999999998862 235799999998 56778999999999999888887776655 567999999988
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcC
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEH 170 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~ 170 (353)
|+|..|.|||.....+ ..++++++|+|+|+++.|..++++.... ...+.+|.++.+.
T Consensus 148 g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~--- 207 (450)
T PRK14360 148 NLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLD--- 207 (450)
T ss_pred CCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHh---
Confidence 9999999998642110 0246899999999999887777654322 2234566676663
Q ss_pred cEEEEEecceE--eEcCCHHHHHHHHHhhccCC------CcccccCC-------------------CCceecCCCCCCCe
Q 018622 171 DVQAYIFRDYW--EDIGTIKSFYEANMALTKES------PAFHFYDP-------------------KTPFYTSPRFLPPT 223 (353)
Q Consensus 171 ~i~~~~~~g~w--~dIgtp~~y~~a~~~ll~~~------~~~~~~~~-------------------~~~i~~~~~i~~~~ 223 (353)
++.++.+.++| ..+.+|+++..+...+.... +...++++ ...+.+.+.+++++
T Consensus 208 ~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 287 (450)
T PRK14360 208 PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGC 287 (450)
T ss_pred hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCC
Confidence 35667777654 55999999988875543211 00111222 12222333344444
Q ss_pred EEec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEec-eEEECCccccchhHH-HHhhcCCCcceEeCCCeEEc
Q 018622 224 KIDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR 300 (353)
Q Consensus 224 ~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~-~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~i~ 300 (353)
.|+. +.|.++.|+++|+|+.+.+.+|+||++|.|+++|+|++ +++.++..++..+.+ .++++++ +.|++++.+.
T Consensus 288 ~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~---~~i~~~~~~~ 364 (450)
T PRK14360 288 RIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEG---SKVNHLSYIG 364 (450)
T ss_pred EECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCC---cEeccceecC
Confidence 4432 55566777777777666677888888888888888875 454445445555544 3566666 6777777777
Q ss_pred ceEeCCCCEECCCeEEcc-------CCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 301 NCIIDKNVKIGKDVVIVN-------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 301 ~~iig~~~~Ig~~~~i~~-------~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
+++||++|.||+++++.+ ...+++.+++|.++.|..+ +.||++++|++|++|
T Consensus 365 ~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~v 423 (450)
T PRK14360 365 DATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGSTI 423 (450)
T ss_pred CceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCEE
Confidence 889999999999998865 2335555666666666555 346889999888875
No 25
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.1e-27 Score=227.20 Aligned_cols=294 Identities=15% Similarity=0.257 Sum_probs=213.6
Q ss_pred ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHH-----CCCcEEEEEEEeCCCCCCcceEEEECC
Q 018622 18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITISCAAVGESRASDYGLVKIDN 92 (353)
Q Consensus 18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~-----~~a~~tll~~~~~~~~~~~~g~v~~d~ 92 (353)
.+-.|+|+|..-+.- ...++|++++||++++++|++++++|++ +++.|||++++........-.++.+|.
T Consensus 109 ~~S~GDamR~id~k~-----litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd~ 183 (673)
T KOG1461|consen 109 SRSVGDAMRDIDEKQ-----LITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDS 183 (673)
T ss_pred cCcHHHHHHHHHhcc-----eeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEcC
Confidence 345789998765421 1248999999999999999999999965 357799999886421123344556664
Q ss_pred -CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC-CCCchhhhhhhhhhhcC
Q 018622 93 -MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGSEIIPAAIMEH 170 (353)
Q Consensus 93 -~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~-~~~~~~~d~l~~l~~~~ 170 (353)
+.+++.|.+- ..+.....++.++|... ..+..++++.+++|.+|+|+++..+-+++.. ...||.+.+|..-+-..
T Consensus 184 ~T~~ll~yq~~--~~~~~~~~l~~sl~d~~-~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~ 260 (673)
T KOG1461|consen 184 RTSRLLHYQKC--VREKHDIQLDLSLFDSN-DEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGY 260 (673)
T ss_pred CcceEEeehhh--cccccccccCHHHhcCC-CcEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCC
Confidence 5788888651 11112344555555554 3456788999999999999999755443321 23467777776666678
Q ss_pred cEEEEEecc--eEeEcCCHHHHHHHHHhhccCCCcccccCCCCceec---------CCCCCCCeEEec-eeee-ceEECC
Q 018622 171 DVQAYIFRD--YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYT---------SPRFLPPTKIDN-CRIK-DAIISH 237 (353)
Q Consensus 171 ~i~~~~~~g--~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~---------~~~i~~~~~i~~-~~i~-~~~ig~ 237 (353)
+|+++..+. |-..+.+++.|....+++++++...-. |+..+.. +.+-++.+.+.. +.+. ++.||.
T Consensus 261 kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~V--pd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~ 338 (673)
T KOG1461|consen 261 KIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLV--PDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGA 338 (673)
T ss_pred eEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhccccc--ccccCCCCceeeecccccccCccceehhhccccceEEecc
Confidence 999998875 889999999999999999998732111 1111111 111133344432 4443 688999
Q ss_pred CcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEE
Q 018622 238 GCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 316 (353)
Q Consensus 238 ~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i 316 (353)
++.|+ ++.|.||+||.+|+||.+++|.++.++.+ |+||.||.|++|+|++++.|++++.+
T Consensus 339 gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc~I~~aii~d~v~i~~~~~l 399 (673)
T KOG1461|consen 339 GTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNCRIDHAIICDDVKIGEGAIL 399 (673)
T ss_pred cccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCceEeeeEeecCcEeCCCccc
Confidence 99999 78999999999999999999999999999 89999999999999999999999999
Q ss_pred ccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 317 VNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 317 ~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
..+ ++++.+ +++|++.+++.+++|
T Consensus 400 ~~g------------~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 400 KPG------------SVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred CCC------------cEEeee-eEeCCCccccccccc
Confidence 765 666666 455777777777553
No 26
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.4e-25 Score=203.69 Aligned_cols=261 Identities=18% Similarity=0.274 Sum_probs=183.8
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCC---------CCCCcceE
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE---------SRASDYGL 87 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~---------~~~~~~g~ 87 (353)
...||+++|+...++++ +++|||++||.++++++..++++++..++.+.|++..... ++.+.+.+
T Consensus 95 ~d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~d~ 168 (433)
T KOG1462|consen 95 SDFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQARDV 168 (433)
T ss_pred cccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCcccccccccce
Confidence 36799999999999998 3799999999999999999999999888776666653211 11123455
Q ss_pred EEECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhh
Q 018622 88 VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI 167 (353)
Q Consensus 88 v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~ 167 (353)
+..+++..=+.|... +.+....+.+..++|+.+|+. ...++|.++++|+|+.++++. +.+. .+..+|..+++|.++
T Consensus 169 igi~e~t~rl~y~~~-~~d~~~~l~i~~slL~~~prl-tl~t~L~dahiY~~k~~v~d~-l~~~-~sisSfk~~f~P~lv 244 (433)
T KOG1462|consen 169 IGINEDTERLAYSSD-SADEEEPLVIRKSLLWNHPRL-TLTTKLVDAHIYVFKHWVIDL-LSEK-ESISSFKADFLPYLV 244 (433)
T ss_pred eeeccccceeEEeec-CCcCCCceehhhhhhhcCCce-EEeccccceeeeeeHHHHHHH-HhcC-Ccceeecccccchhh
Confidence 555554322334333 223344677888899999885 356899999999999999985 4432 233445556666654
Q ss_pred hc---------------------------------CcEEEEEe--cceEeEcCCHHHHHHHHH--hhccCCCcccccCCC
Q 018622 168 ME---------------------------------HDVQAYIF--RDYWEDIGTIKSFYEANM--ALTKESPAFHFYDPK 210 (353)
Q Consensus 168 ~~---------------------------------~~i~~~~~--~g~w~dIgtp~~y~~a~~--~ll~~~~~~~~~~~~ 210 (353)
+. -++++|.. +.-+..++|.-.|+++|+ .+..-.+...
T Consensus 245 kkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~----- 319 (433)
T KOG1462|consen 245 KKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAK----- 319 (433)
T ss_pred hhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhccccc-----
Confidence 32 23445544 346789999999999995 3332221110
Q ss_pred CceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCc
Q 018622 211 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 289 (353)
Q Consensus 211 ~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~ 289 (353)
.+...+... +.++ .+++|+++|.|+ ++.|..|+||++|.||++++|.+|+++++
T Consensus 320 -~~k~~~~~~--~l~g----~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~n------------------ 374 (433)
T KOG1462|consen 320 -FVKNYVKKV--ALVG----ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDN------------------ 374 (433)
T ss_pred -cccchhhhe--eccc----hhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecC------------------
Confidence 000000000 1111 268888999998 78888999999999999999999999998
Q ss_pred ceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622 290 PIGVGRNTKIRNCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 290 ~~~ig~~~~i~~~iig~~~~Ig~~~~i~~ 318 (353)
++||+|+.|.+||||+++.||+++.+.|
T Consensus 375 -V~vg~G~~IensIIg~gA~Ig~gs~L~n 402 (433)
T KOG1462|consen 375 -VVVGDGVNIENSIIGMGAQIGSGSKLKN 402 (433)
T ss_pred -cEecCCcceecceecccceecCCCeeee
Confidence 8899999999999999999999999887
No 27
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.92 E-value=2.9e-24 Score=195.33 Aligned_cols=157 Identities=20% Similarity=0.288 Sum_probs=131.5
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEEC-CCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMG 94 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d-~~g 94 (353)
..++|||+|+++++++++. ..+++|+|++||++++.|+++++++|+++++++|+++.+++.+.+.+||++.+| +++
T Consensus 82 ~~~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g 158 (257)
T cd06428 82 YKPLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG 158 (257)
T ss_pred CccCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCC
Confidence 4578999999999999962 234789999999999999999999999999999999988754446789999998 678
Q ss_pred CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC------------------CCC
Q 018622 95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP------------------TSN 156 (353)
Q Consensus 95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~------------------~~~ 156 (353)
+|..|.|||..+. +.++++|+|+|++++|+.+ .+..+ ...
T Consensus 159 ~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~ 216 (257)
T cd06428 159 EVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQEAQLGDDNNREGRAEVI 216 (257)
T ss_pred eEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhcccccccccccccccccccccee
Confidence 9999999987432 4689999999999999754 33221 113
Q ss_pred chhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhh
Q 018622 157 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 197 (353)
Q Consensus 157 ~~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~l 197 (353)
++.+|+++.+++++++.+|.++|+|.|||||++|++||+.+
T Consensus 217 ~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 217 RLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred eehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 45579999999999999999999999999999999999753
No 28
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.6e-24 Score=190.01 Aligned_cols=156 Identities=23% Similarity=0.385 Sum_probs=136.6
Q ss_pred CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622 15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG 94 (353)
Q Consensus 15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 94 (353)
|+.++|-|+|+..+++|+.+ ++|+|+.||+++..+++++++.+.++++++++++.++.+ |++||++.+|+++
T Consensus 80 Q~~p~GlA~Av~~a~~fv~~------~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d--P~rfGV~e~d~~~ 151 (286)
T COG1209 80 QPEPDGLAHAVLIAEDFVGD------DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD--PSRYGVVEFDEDG 151 (286)
T ss_pred cCCCCcHHHHHHHHHhhcCC------CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC--cccceEEEEcCCC
Confidence 57889999999999999984 899999999998779999999999999999999999998 8999999999999
Q ss_pred CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC-Cch-hhhhhhhhhhcCcE
Q 018622 95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS-NDF-GSEIIPAAIMEHDV 172 (353)
Q Consensus 95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~-~~~-~~d~l~~l~~~~~i 172 (353)
++++++|||..|. |+|+-+|+|+|++++|+ +++...|+. .++ ++|++..++++++.
T Consensus 152 ~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElEITd~i~~~i~~G~~ 209 (286)
T COG1209 152 KVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELEITDAIDLYIEKGYL 209 (286)
T ss_pred cEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceEehHHHHHHHHcCcE
Confidence 9999999999875 68999999999999997 566665542 232 57899999988655
Q ss_pred E-EEEecceEeEcCCHHHHHHHHHhhccC
Q 018622 173 Q-AYIFRDYWEDIGTIKSFYEANMALTKE 200 (353)
Q Consensus 173 ~-~~~~~g~w~dIgtp~~y~~a~~~ll~~ 200 (353)
. .....|+|.|.||+++|++|++.++..
T Consensus 210 ~~~~~~~G~WlDtGt~~slleA~~~i~~~ 238 (286)
T COG1209 210 VVAILIRGWWLDTGTPESLLEANNFVRTV 238 (286)
T ss_pred EEEEEccceEEecCChhhHHHHHHHHHHH
Confidence 4 556788999999999999999888763
No 29
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.90 E-value=8e-23 Score=183.20 Aligned_cols=152 Identities=26% Similarity=0.379 Sum_probs=130.0
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECC-CC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-MG 94 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~-~g 94 (353)
...+||+++|++++.++++ .+++|+|++||++++.++++++++|+++++++|+++.+.++ +++||++.+|+ ++
T Consensus 81 ~~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~~ 154 (233)
T cd06425 81 TEPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED--PSKYGVVVHDENTG 154 (233)
T ss_pred CCCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC--ccccCeEEEcCCCC
Confidence 4568999999999999962 23679999999999999999999999999999999988765 57899999987 78
Q ss_pred CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEE
Q 018622 95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQA 174 (353)
Q Consensus 95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~ 174 (353)
+|+++.|||..+. ++++++|+|+|++++|+.+.+ ...++..++++.+++++++.+
T Consensus 155 ~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l~~----~~~~~~~~~~~~l~~~~~v~~ 209 (233)
T cd06425 155 RIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRIPL----RPTSIEKEIFPKMASEGQLYA 209 (233)
T ss_pred EEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhccc----CcccchhhhHHHHHhcCCEEE
Confidence 9999999987542 368999999999999975432 223445688999999999999
Q ss_pred EEecceEeEcCCHHHHHHHHHhhc
Q 018622 175 YIFRDYWEDIGTIKSFYEANMALT 198 (353)
Q Consensus 175 ~~~~g~w~dIgtp~~y~~a~~~ll 198 (353)
|+++|+|.|||||++|++|++.+|
T Consensus 210 ~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 210 YELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EeeCCEEEcCCCHHHHHHHHHHhC
Confidence 999999999999999999998764
No 30
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.90 E-value=1.1e-22 Score=187.67 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=125.6
Q ss_pred CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--------cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcc
Q 018622 14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MDYMDFIQSHVDRDADITISCAAVGESRASDY 85 (353)
Q Consensus 14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--------~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~ 85 (353)
.|++++||||||++|++++++ ++|+|++||++++ +++++++++|.++++.++++ ..++. .+++|
T Consensus 103 ~q~~~lGtg~Av~~a~~~l~~------~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~-~~~~~-~~~~y 174 (297)
T TIGR01105 103 RQAQPLGLGHSILCARPVVGD------NPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLA-KRMPG-DLSEY 174 (297)
T ss_pred eCCCcCchHHHHHHHHHHhCC------CCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEE-EEcCC-CCccc
Confidence 457899999999999999962 6899999999997 68999999998888766444 44332 27899
Q ss_pred eEEEE----CCCCC---eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CC
Q 018622 86 GLVKI----DNMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 156 (353)
Q Consensus 86 g~v~~----d~~g~---V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~ 156 (353)
|++.+ |++|+ |.+|.|||..+.. ..++++++|+|+|++++|+. ++...+. ..
T Consensus 175 Gvv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge 235 (297)
T TIGR01105 175 SVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMAVGRYVLSADIWAE-LERTEPGAWGR 235 (297)
T ss_pred eEEEecccccCCCCeeeEeEEEECCCCccc------------------CCcCEEEEEEEEECHHHHHH-HhcCCCCCCCe
Confidence 99998 44564 5899999965421 02579999999999999974 5543322 11
Q ss_pred chhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhc
Q 018622 157 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 198 (353)
Q Consensus 157 ~~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll 198 (353)
..++|+++.+++++++++|.++|+|+|+|+|++|++|+.++.
T Consensus 236 ~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 236 IQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred eeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 235689999999999999999999999999999999988764
No 31
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.90 E-value=7.6e-23 Score=184.82 Aligned_cols=160 Identities=33% Similarity=0.555 Sum_probs=129.3
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCc--EEEEEEEeCCCCCCcceEEEECCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDAD--ITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~--~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
+..+|||+||+++++++... ..+++|+|++||++++.++.+++++|++++++ +++...+.++ +++||++.+|++
T Consensus 81 ~~~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~ 156 (248)
T PF00483_consen 81 PEPLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVED--PSRYGVVEVDED 156 (248)
T ss_dssp SSSSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSG--GGGSEEEEEETT
T ss_pred ccccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhccccccccccccccccc--cccceeeeeccc
Confidence 45679999999999999841 01235999999999999999999999999884 4555555443 789999999998
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHH--hhCCCCCchhhhhhhhhhhcC-
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDFGSEIIPAAIMEH- 170 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~--~~~~~~~~~~~d~l~~l~~~~- 170 (353)
|+|.+|.|||..+.. +.++++|+|+|++++|+.+++ +......+++.|+++.+++++
T Consensus 157 ~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~ 216 (248)
T PF00483_consen 157 GRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGK 216 (248)
T ss_dssp SEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTC
T ss_pred eeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCC
Confidence 999999999986531 468999999999999987654 122234567789999999886
Q ss_pred cEEEEEecc--eEeEcCCHHHHHHHHHhhcc
Q 018622 171 DVQAYIFRD--YWEDIGTIKSFYEANMALTK 199 (353)
Q Consensus 171 ~i~~~~~~g--~w~dIgtp~~y~~a~~~ll~ 199 (353)
.+.++.+++ +|.|||+|++|++|++++++
T Consensus 217 ~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 217 KVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred ceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 555889998 79999999999999999875
No 32
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.89 E-value=4.5e-22 Score=180.50 Aligned_cols=150 Identities=16% Similarity=0.271 Sum_probs=128.2
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
..++|||+||++++++++ +++|+|++||+++++|+++++++|.++++++|+++.+ + +.+||++.+|+ ++
T Consensus 100 ~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~--~--~~~yG~v~~d~-~~ 168 (254)
T TIGR02623 100 GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ--P--PGRFGALDLEG-EQ 168 (254)
T ss_pred CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec--C--CCcccEEEECC-Ce
Confidence 356899999999999986 3789999999999999999999999999999987653 2 56799999985 69
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY 175 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~ 175 (353)
|++|.|||..+ +.++++|+|+|++++|+ .+++. ..++.+|+++.+++++++.+|
T Consensus 169 V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~-~l~~~---~~~~~~d~i~~l~~~~~v~~~ 222 (254)
T TIGR02623 169 VTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD-LIDGD---ATVWEQEPLETLAQRGELSAY 222 (254)
T ss_pred EEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-hcccc---CchhhhhHHHHHHhCCCEEEE
Confidence 99999998532 35899999999999995 55432 235678999999999999999
Q ss_pred EecceEeEcCCHHHHHHHHHhhccCCC
Q 018622 176 IFRDYWEDIGTIKSFYEANMALTKESP 202 (353)
Q Consensus 176 ~~~g~w~dIgtp~~y~~a~~~ll~~~~ 202 (353)
.++|+|.|||||++|.+++..+...+.
T Consensus 223 ~~~g~w~dIgt~~~~~~~~~~~~~~~~ 249 (254)
T TIGR02623 223 EHSGFWQPMDTLRDKNYLEELWESGRA 249 (254)
T ss_pred eCCCEEecCCchHHHHHHHHHHHcCCC
Confidence 999999999999999999988887653
No 33
>PRK10122 GalU regulator GalF; Provisional
Probab=99.89 E-value=4.6e-22 Score=183.91 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=126.0
Q ss_pred CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--------cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcc
Q 018622 14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MDYMDFIQSHVDRDADITISCAAVGESRASDY 85 (353)
Q Consensus 14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--------~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~ 85 (353)
.|+.++||||||++|++++. +++|+|++||++++ +|+++++++|.+++++++++....+ .+++|
T Consensus 103 ~q~~~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~y 174 (297)
T PRK10122 103 RQGQPLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPG--DLSEY 174 (297)
T ss_pred ecCCcCchHHHHHHHHHHcC------CCCEEEEECCeeccCccccccchhHHHHHHHHHHhCCcEEEEEECCC--CCCCc
Confidence 44668999999999999996 26899999999986 5899999999988887554443333 37899
Q ss_pred eEEEEC----CCC---CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CC
Q 018622 86 GLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 156 (353)
Q Consensus 86 g~v~~d----~~g---~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~ 156 (353)
|++.+| ++| +|..|.|||..+.. ..++++++|+|+|++++|..+ .+..+. ..
T Consensus 175 Gvv~~d~~~~~~g~v~~I~~~~EKp~~~~~------------------~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~~e 235 (297)
T PRK10122 175 SVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMAVGRYVLSADIWPEL-ERTEPGAWGR 235 (297)
T ss_pred eEEEecCcccCCCCeeeEEEEEECCCCccc------------------CCccEEEEEEEEECHHHHHHH-HhCCCCCCCe
Confidence 999996 356 78999999964421 025789999999999999865 433222 22
Q ss_pred chhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhh
Q 018622 157 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 197 (353)
Q Consensus 157 ~~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~l 197 (353)
..++|+++.+++++++.+|.++|+|+|+|+|++|++|+.++
T Consensus 236 ~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 236 IQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred eeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999998
No 34
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.89 E-value=4.3e-22 Score=184.46 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=127.2
Q ss_pred CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--------cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcce
Q 018622 15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MDYMDFIQSHVDRDADITISCAAVGESRASDYG 86 (353)
Q Consensus 15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--------~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g 86 (353)
|..++|||+|+++|++++. +++|+|++||++++ .|+.+++++|.+++++ |+++.+++. +..||
T Consensus 109 q~~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yG 179 (302)
T PRK13389 109 QGLAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVAD--VTAYG 179 (302)
T ss_pred cCCCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEccc--CCcce
Confidence 4667999999999999986 37899999999975 7999999999888876 777777755 67899
Q ss_pred EEEECC-------CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CCc
Q 018622 87 LVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND 157 (353)
Q Consensus 87 ~v~~d~-------~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~~ 157 (353)
++..|+ +++|..|.|||..... .++++++|+|+|++++|+ .+++..+. ...
T Consensus 180 vv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s~~~~~GiYi~~~~il~-~l~~~~~~~~~e~ 239 (302)
T PRK13389 180 VVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEI 239 (302)
T ss_pred EEEecCcccccCCcceEEEEEECCCCCCC-------------------CccEEEEEEEEECHHHHH-HHHhCCCCCCCee
Confidence 998863 3579999999974321 146899999999999996 56543322 223
Q ss_pred hhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhc
Q 018622 158 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 198 (353)
Q Consensus 158 ~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll 198 (353)
+.+|+++.+++++++.+|.++|+|+|||+|++|++|+.++-
T Consensus 240 ~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 240 QLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred eHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999998874
No 35
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.87 E-value=3e-21 Score=177.44 Aligned_cols=153 Identities=24% Similarity=0.383 Sum_probs=126.5
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE-EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG 94 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 94 (353)
+.++|||+|++++++++++ ++|+|++||++ ++.++.+++++|.++++++|+++.++++ +++||++.+|++|
T Consensus 80 ~~~~Gta~al~~a~~~l~~------~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~--p~~yGvv~~d~~g 151 (286)
T TIGR01207 80 PSPDGLAQAFIIGEDFIGG------DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD--PERYGVVEFDSNG 151 (286)
T ss_pred cCCCCHHHHHHHHHHHhCC------CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC--HHHCceEEECCCC
Confidence 4678999999999999973 67999999975 5889999999999888899999988876 6789999999889
Q ss_pred CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CCc-hhhhhhhhhhhcCcE
Q 018622 95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SND-FGSEIIPAAIMEHDV 172 (353)
Q Consensus 95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~~-~~~d~l~~l~~~~~i 172 (353)
+|++|.|||..+. ++++++|+|+|++++++ ++++..++ ..+ ..+|+++.+++++++
T Consensus 152 ~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~eitdv~~~~l~~g~l 209 (286)
T TIGR01207 152 RAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGELEITDLNRVYLEEGRL 209 (286)
T ss_pred eEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcEeHHHHHHHHHHcCCc
Confidence 9999999997542 46899999999999986 45543332 122 346899999998877
Q ss_pred EEEEe-cce-EeEcCCHHHHHHHHHhhc
Q 018622 173 QAYIF-RDY-WEDIGTIKSFYEANMALT 198 (353)
Q Consensus 173 ~~~~~-~g~-w~dIgtp~~y~~a~~~ll 198 (353)
.++.+ +|+ |+|+|||++|++|+..+.
T Consensus 210 ~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 210 SVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 76666 675 999999999999987664
No 36
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.87 E-value=5.7e-21 Score=171.93 Aligned_cols=153 Identities=20% Similarity=0.284 Sum_probs=126.0
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG 94 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 94 (353)
+..+||++||++++++++ +++|+|++||+++ +.++.+++++|.++++++|+++.+.++ +++||++.+|++|
T Consensus 81 ~~~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~g 152 (240)
T cd02538 81 PKPGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--PERYGVVEFDENG 152 (240)
T ss_pred CCCCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--hhcCceEEecCCC
Confidence 456899999999999986 2689999999754 678999999999889999999988765 5789999999889
Q ss_pred CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CC-chhhhhhhhhhhcCcE
Q 018622 95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN-DFGSEIIPAAIMEHDV 172 (353)
Q Consensus 95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~-~~~~d~l~~l~~~~~i 172 (353)
+|+.|.|||..+. +.++++|+|+|++++|+ .+++..+. .. ....++++.+++++++
T Consensus 153 ~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~~~~l~~~g~~ 210 (240)
T cd02538 153 RVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGELEITDVNNEYLEKGKL 210 (240)
T ss_pred cEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhHHHHHHHHHhCCe
Confidence 9999999986542 35889999999999996 55543221 11 2346899999988888
Q ss_pred EEEEec--ceEeEcCCHHHHHHHHHhhc
Q 018622 173 QAYIFR--DYWEDIGTIKSFYEANMALT 198 (353)
Q Consensus 173 ~~~~~~--g~w~dIgtp~~y~~a~~~ll 198 (353)
.++.++ |+|.|||||++|++|++.+.
T Consensus 211 ~~~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 211 SVELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred EEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 888877 99999999999999998653
No 37
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.86 E-value=8.5e-21 Score=174.74 Aligned_cols=152 Identities=22% Similarity=0.341 Sum_probs=125.8
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE-EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG 94 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 94 (353)
+.++|||+|++.+++++.+ ++|++++||.+ ++.|+++++++|.++++++|+++.++++ +++||++.+|++|
T Consensus 84 ~~~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~--p~~yGvv~~d~~g 155 (292)
T PRK15480 84 PSPDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDQNG 155 (292)
T ss_pred CCCCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCC--cccCcEEEECCCC
Confidence 5578999999999999962 56999999976 4899999999999888899999888766 7899999999889
Q ss_pred CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcCc
Q 018622 95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEHD 171 (353)
Q Consensus 95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~~ 171 (353)
+|++|.|||..+. ++++++|+|+|++++++. +++..+. ..+ .+|+++.++++++
T Consensus 156 ~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~~~ge~~-itd~~~~~l~~g~ 212 (292)
T PRK15480 156 TAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPSARGELE-ITDINRIYMEQGR 212 (292)
T ss_pred cEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCCCCCeeE-hHHHHHHHHhcCC
Confidence 9999999997543 578999999999999974 4443332 223 4689999998887
Q ss_pred EEE-EEecc-eEeEcCCHHHHHHHHHhhc
Q 018622 172 VQA-YIFRD-YWEDIGTIKSFYEANMALT 198 (353)
Q Consensus 172 i~~-~~~~g-~w~dIgtp~~y~~a~~~ll 198 (353)
+.. +..+| +|+|+|||++|.+|+..+.
T Consensus 213 ~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 213 LSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred eEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 754 46678 5999999999999998765
No 38
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.86 E-value=1.1e-20 Score=172.83 Aligned_cols=158 Identities=23% Similarity=0.267 Sum_probs=125.1
Q ss_pred CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEec---CHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEEC
Q 018622 15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID 91 (353)
Q Consensus 15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~---dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d 91 (353)
+++++|||+||+++++++++ ++|+|++||.++.. +++++++.|++++++ ++++.+.+.+.+.+||++.+|
T Consensus 100 ~~~~~Gt~~al~~~~~~i~~------~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d 172 (267)
T cd02541 100 QKEPLGLGHAVLCAKPFIGD------EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIAVEEVPPEDVSKYGIVKGE 172 (267)
T ss_pred cCCCCChHHHHHHHHHHhCC------CceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEEEEEcChhcCccceEEEee
Confidence 36679999999999999962 78999999998865 499999999887775 466666554446789999998
Q ss_pred C----CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC-CCCchhhhhhhhh
Q 018622 92 N----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGSEIIPAA 166 (353)
Q Consensus 92 ~----~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~-~~~~~~~d~l~~l 166 (353)
+ +++|..|.|||..... .+.++++|+|+|++++|..+.+.... ....+..++++.+
T Consensus 173 ~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l 233 (267)
T cd02541 173 KIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKL 233 (267)
T ss_pred cCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHH
Confidence 5 2489999999863211 14688999999999999755331111 1223456899999
Q ss_pred hhcCcEEEEEecceEeEcCCHHHHHHHHHhhc
Q 018622 167 IMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 198 (353)
Q Consensus 167 ~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll 198 (353)
++++++.+|.++|+|.|||||++|++|++++.
T Consensus 234 ~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 234 LEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 98899999999999999999999999999875
No 39
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.85 E-value=6.2e-20 Score=166.51 Aligned_cols=149 Identities=17% Similarity=0.285 Sum_probs=126.7
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCe
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 96 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 96 (353)
..+||++|+++|++++.+ +++|+|++||++++.|+.++++.|.++++++|+++.. + ..+||++.+|++|+|
T Consensus 100 ~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--~--~~~~g~v~~d~~g~V 170 (253)
T cd02524 100 LNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--P--PGRFGELDLDDDGQV 170 (253)
T ss_pred cccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--C--CCcccEEEECCCCCE
Confidence 357899999999999862 2689999999999999999999999999999987763 2 567999999988999
Q ss_pred eEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEE
Q 018622 97 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYI 176 (353)
Q Consensus 97 ~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~ 176 (353)
..+.|||..+ +.++++|+|+|++++|+. +++. ..++.+++++.+++++++.+|.
T Consensus 171 ~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~-l~~~---~~~~~~d~l~~li~~~~v~~~~ 224 (253)
T cd02524 171 TSFTEKPQGD----------------------GGWINGGFFVLEPEVFDY-IDGD---DTVFEREPLERLAKDGELMAYK 224 (253)
T ss_pred EEEEECCCCC----------------------CceEEEEEEEECHHHHHh-hccc---cchhhHHHHHHHHhcCCEEEEe
Confidence 9999998643 247899999999999874 4332 3455678999999999999999
Q ss_pred ecceEeEcCCHHHHHHHHHhhccC
Q 018622 177 FRDYWEDIGTIKSFYEANMALTKE 200 (353)
Q Consensus 177 ~~g~w~dIgtp~~y~~a~~~ll~~ 200 (353)
++|+|.||+|+++|.+|+..+...
T Consensus 225 ~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 225 HTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred cCCEEEeCcCHHHHHHHHHHHHcC
Confidence 999999999999999999777554
No 40
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.84 E-value=3.4e-20 Score=168.85 Aligned_cols=154 Identities=20% Similarity=0.223 Sum_probs=121.5
Q ss_pred CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEec---CHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEE
Q 018622 14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 90 (353)
Q Consensus 14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~---dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~ 90 (353)
.+++++||++||+++++++. +++|+|++||+++.. ++++++++|+++++++ +++...+.+.+.+||++.+
T Consensus 99 ~~~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~ 171 (260)
T TIGR01099 99 RQKEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDG 171 (260)
T ss_pred ecCCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEe
Confidence 34678999999999999985 378999999999864 6999999999988876 5555555444678999998
Q ss_pred CC----CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CCchhhhhhhh
Q 018622 91 DN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SNDFGSEIIPA 165 (353)
Q Consensus 91 d~----~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~~~~~d~l~~ 165 (353)
|+ +++|+.|.|||..... .++++++|+|+|++++|..+.+..... ......|+++.
T Consensus 172 d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~ 232 (260)
T TIGR01099 172 EGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRK 232 (260)
T ss_pred ccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHH
Confidence 62 3699999999953211 146899999999999998654322111 12335689999
Q ss_pred hhhcCcEEEEEecceEeEcCCHHHHHHH
Q 018622 166 AIMEHDVQAYIFRDYWEDIGTIKSFYEA 193 (353)
Q Consensus 166 l~~~~~i~~~~~~g~w~dIgtp~~y~~a 193 (353)
+++++++++|.++|+|.|||||++|++|
T Consensus 233 l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 233 LLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 9998999999999999999999999874
No 41
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.81 E-value=1.1e-18 Score=156.51 Aligned_cols=153 Identities=26% Similarity=0.367 Sum_probs=126.0
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
++.+||+++++.++.+++ +++|++++||++++.++.++++.|.++++++++++.+.++ +.+||++.+|+ ++
T Consensus 80 ~~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~~ 150 (236)
T cd04189 80 EEPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED--PRRFGVAVVDD-GR 150 (236)
T ss_pred CCCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC--cccceEEEEcC-Ce
Confidence 456799999999999886 2689999999999999999999999999999999888765 57799988875 59
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CCchhhhhhhhhhhc-CcE
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIME-HDV 172 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~~~~~d~l~~l~~~-~~i 172 (353)
|..+.|||..+. +.++++|+|+|++++|+.+ +...+. ......++++.++++ .++
T Consensus 151 v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~d~~~~~i~~g~~v 208 (236)
T cd04189 151 IVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELEITDAIQWLIDRGRRV 208 (236)
T ss_pred EEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEEHHHHHHHHHHcCCcE
Confidence 999999986432 3578999999999999754 432221 112246889988876 469
Q ss_pred EEEEecceEeEcCCHHHHHHHHHhhcc
Q 018622 173 QAYIFRDYWEDIGTIKSFYEANMALTK 199 (353)
Q Consensus 173 ~~~~~~g~w~dIgtp~~y~~a~~~ll~ 199 (353)
.+|.++++|.|||||++|.+|++.+++
T Consensus 209 ~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 209 GYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred EEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999875
No 42
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.81 E-value=3.2e-19 Score=158.49 Aligned_cols=140 Identities=14% Similarity=0.178 Sum_probs=117.8
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHH--HCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV--DRDADITISCAAVGESRASDYGLVKIDNMG 94 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~--~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 94 (353)
+.+||+++|+.++.++++ ++|+|++||++++.|+.++++.|+ +.++.+++...+.+. ...||++.+|+++
T Consensus 80 ~~~g~~~~l~~~~~~~~~------~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~ 151 (221)
T cd06422 80 ELLETGGGIKKALPLLGD------EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG--HNGVGDFSLDADG 151 (221)
T ss_pred cccccHHHHHHHHHhcCC------CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC--CCCcceEEECCCC
Confidence 567999999999999862 789999999999999999999998 466777777666554 6789999999889
Q ss_pred CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEE
Q 018622 95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQA 174 (353)
Q Consensus 95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~ 174 (353)
+|..+.|||.. +++++|+|+|++++|..+.+. ....+++++.+++++++.+
T Consensus 152 ~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~~d~~~~l~~~~~~~~ 202 (221)
T cd06422 152 RLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSLNPLWDRAIAAGRLFG 202 (221)
T ss_pred cEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccHHHHHHHHHHcCCeEE
Confidence 99999888742 478999999999999764321 2235689999999999999
Q ss_pred EEecceEeEcCCHHHHHHH
Q 018622 175 YIFRDYWEDIGTIKSFYEA 193 (353)
Q Consensus 175 ~~~~g~w~dIgtp~~y~~a 193 (353)
|.++|+|.|||||++|.+|
T Consensus 203 ~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 203 LVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred EecCCEEEcCCCHHHHhhC
Confidence 9999999999999999875
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.80 E-value=1.5e-18 Score=153.93 Aligned_cols=145 Identities=26% Similarity=0.429 Sum_probs=123.0
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
...+||+++|+.+++++. +++|++++||++++.++.++++.|++.++++++++.+.+. ...|+.+.+|++++
T Consensus 78 ~~~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~v~~d~~~~ 149 (223)
T cd06915 78 PEPLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGR 149 (223)
T ss_pred CCCCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--CCcceeEEECCCCe
Confidence 346899999999999884 3789999999999999999999999888889998888654 56799999988899
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY 175 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~ 175 (353)
|..+.|||.... +.++++|+|+|++++|..+.+. ..++.+++++.+++++++.+|
T Consensus 150 v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l~~~~~v~~~ 204 (223)
T cd06915 150 VIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADVLPALVKRGRLYGF 204 (223)
T ss_pred EEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHHHhcCcEEEE
Confidence 999999876431 4688999999999999754221 234567899999988899999
Q ss_pred EecceEeEcCCHHHHHHH
Q 018622 176 IFRDYWEDIGTIKSFYEA 193 (353)
Q Consensus 176 ~~~g~w~dIgtp~~y~~a 193 (353)
+++++|.||+||++|.+|
T Consensus 205 ~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 205 EVDGYFIDIGIPEDYARA 222 (223)
T ss_pred ecCCeEEecCCHHHHHhh
Confidence 999999999999999987
No 44
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=1.6e-18 Score=152.37 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=137.8
Q ss_pred CCCCCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEec---CHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceE
Q 018622 11 GESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHVDRDADITISCAAVGESRASDYGL 87 (353)
Q Consensus 11 ~~~~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~---dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~ 87 (353)
.-.+|..++|.|||+++|++++.+ |+|.|+.||.++.. .+.+|++.+.+.+. .++.+.+++++..++||+
T Consensus 100 ~~vRQ~e~~GLGhAVl~A~~~vg~------EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~-svi~v~ev~~e~v~kYGv 172 (291)
T COG1210 100 SFVRQKEPLGLGHAVLCAKPFVGD------EPFAVLLPDDLVDSEKPCLKQMIELYEETGG-SVIGVEEVPPEDVSKYGV 172 (291)
T ss_pred EEEecCCCCcchhHHHhhhhhcCC------CceEEEeCCeeecCCchHHHHHHHHHHHhCC-cEEEEEECCHHHCcccce
Confidence 345778999999999999999984 89999999999875 47899999988887 467778888777899999
Q ss_pred EE----ECCC-CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC--Cchhh
Q 018622 88 VK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--NDFGS 160 (353)
Q Consensus 88 v~----~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~--~~~~~ 160 (353)
+. .+.+ .+|..+.|||...++ .|+++-.|-|+|+|++|+ +|++..+.. .-.++
T Consensus 173 i~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRYil~p~IFd-~L~~~~~G~ggEiQLT 232 (291)
T COG1210 173 IDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRYVLTPEIFD-ILEETKPGAGGEIQLT 232 (291)
T ss_pred EecCccccCCeEEEEEEEECCCCCCC-------------------CcceeeeeeeecCHHHHH-HHhhCCCCCCCEeeHH
Confidence 98 4333 489999999976543 479999999999999997 677765532 22368
Q ss_pred hhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhccCC
Q 018622 161 EIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 201 (353)
Q Consensus 161 d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~ 201 (353)
|.+..++++..+++|.++|..+|+|++..|.+|+.++..++
T Consensus 233 Dai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 233 DAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred HHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999887654
No 45
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.79 E-value=3.4e-18 Score=151.07 Aligned_cols=140 Identities=32% Similarity=0.536 Sum_probs=119.4
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
+.++||+++|+.+++++. +++|+|++||++++.|+.++++.|+++++++|+++.+.+. +.+|+++.+|++++
T Consensus 78 ~~~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~d~~~~ 149 (217)
T cd04181 78 EEPLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED--PSRYGVVELDDDGR 149 (217)
T ss_pred CCCCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--CCcceEEEEcCCCc
Confidence 345799999999999883 3899999999999999999999999999999999988764 67899999998899
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY 175 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~ 175 (353)
|..+.|||..+. ..++++|+|+|++++|+ .++.......++..++++.++++.++.+|
T Consensus 150 v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l~~~~~v~~~ 207 (217)
T cd04181 150 VTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLLIEEGKVYGY 207 (217)
T ss_pred EEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHHHhcCCEEEE
Confidence 999999987542 36899999999999996 45543222346678999999988999999
Q ss_pred EecceEeEcC
Q 018622 176 IFRDYWEDIG 185 (353)
Q Consensus 176 ~~~g~w~dIg 185 (353)
+++|+|.|+|
T Consensus 208 ~~~g~w~dig 217 (217)
T cd04181 208 PVDGYWLDIG 217 (217)
T ss_pred EcCCEEecCC
Confidence 9999999987
No 46
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.77 E-value=1.3e-17 Score=147.88 Aligned_cols=142 Identities=26% Similarity=0.437 Sum_probs=116.4
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
+.++||+++++.+.+... ++|+|++||.+++.++.++++.|+++++++++++.+... ...||++..|+ ++
T Consensus 78 ~~~~g~~~~l~~~~~~~~-------~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~~ 147 (220)
T cd06426 78 DKPLGTAGALSLLPEKPT-------DPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--QVPYGVVETEG-GR 147 (220)
T ss_pred CCCCcchHHHHHHHhhCC-------CCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--CCcceEEEECC-CE
Confidence 456899999987776543 789999999999999999999999999999998877543 46699999986 89
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEEE
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQA 174 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~~ 174 (353)
|..+.|||.. +.++++|+|+|++++++.+ ++ .......++++.++++ .++.+
T Consensus 148 v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~~~~~~i~~~~~i~~ 200 (220)
T cd06426 148 ITSIEEKPTH-----------------------SFLVNAGIYVLEPEVLDLI-PK---NEFFDMPDLIEKLIKEGKKVGV 200 (220)
T ss_pred EEEEEECCCC-----------------------CCeEEEEEEEEcHHHHhhc-CC---CCCcCHHHHHHHHHHCCCcEEE
Confidence 9999999753 2578999999999998743 32 1222246788888877 46999
Q ss_pred EEecceEeEcCCHHHHHHHH
Q 018622 175 YIFRDYWEDIGTIKSFYEAN 194 (353)
Q Consensus 175 ~~~~g~w~dIgtp~~y~~a~ 194 (353)
|+++++|+|+|||++|++||
T Consensus 201 ~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 201 FPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred EEeCCeEEeCCCHHHHHhhC
Confidence 99999999999999999875
No 47
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.70 E-value=4.8e-17 Score=144.57 Aligned_cols=134 Identities=25% Similarity=0.352 Sum_probs=76.3
Q ss_pred chhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhccCCCcc----cccCCCC-ceecCCCCCCCeEEeceeee
Q 018622 157 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAF----HFYDPKT-PFYTSPRFLPPTKIDNCRIK 231 (353)
Q Consensus 157 ~~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~----~~~~~~~-~i~~~~~i~~~~~i~~~~i~ 231 (353)
+| .|.++.+++.+ ++.++|||.|+ ++|++++++++...... ....+.. .+..++.+.+++.+.+
T Consensus 29 ~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g---- 97 (231)
T TIGR03532 29 DF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD---- 97 (231)
T ss_pred cc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC----
Confidence 44 57888888766 89999999999 99999999999764210 0000110 1122223333333322
Q ss_pred ceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcc--------
Q 018622 232 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-------- 301 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-------- 301 (353)
++.||++|.|+ ++.| .+++||++|.|++++.|.+.++++++ |.|++++.|.+
T Consensus 98 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~------------------~~Ig~~~~I~~~~~~~~~~ 159 (231)
T TIGR03532 98 QVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKN------------------VHIGAGAVLAGVIEPPSAK 159 (231)
T ss_pred CeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCC------------------cEEcCCcEEccccccccCC
Confidence 34444444444 2322 24666666666666666543334333 66666666653
Q ss_pred -eEeCCCCEECCCeEEccC
Q 018622 302 -CIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 302 -~iig~~~~Ig~~~~i~~~ 319 (353)
++||+++.||+++++..+
T Consensus 160 ~v~IGd~v~IG~gsvI~~g 178 (231)
T TIGR03532 160 PVVIEDNVLIGANAVILEG 178 (231)
T ss_pred CeEECCCcEECCCCEEcCC
Confidence 566666666666666543
No 48
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.69 E-value=7.6e-16 Score=137.67 Aligned_cols=144 Identities=22% Similarity=0.311 Sum_probs=113.9
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
+..+||++++++|+.++. ++++|++++||++++.++.+++++|.+.+++.++++.+. + ..+|+++.+|++|+
T Consensus 79 ~~~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~~~~v~~d~~~~ 150 (231)
T cd04183 79 GETLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS-S--HPRWSYVKLDENGR 150 (231)
T ss_pred CCCCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC-C--CCCeEEEEECCCCC
Confidence 457899999999999885 137899999999999999999999988888888777654 2 45799999998999
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHH-HHHHHHHhhC----CC-CCchhhhhhhhhhhc
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY----PT-SNDFGSEIIPAAIME 169 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~-vl~~~l~~~~----~~-~~~~~~d~l~~l~~~ 169 (353)
|..+.||+.. +.++++|+|+|+++ .|...++... .. ...+..++++.++++
T Consensus 151 v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~ 207 (231)
T cd04183 151 VIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILD 207 (231)
T ss_pred EEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHc
Confidence 9999988531 35789999999997 5544554311 11 122356899999877
Q ss_pred C-cEEEEEe-cceEeEcCCHHHH
Q 018622 170 H-DVQAYIF-RDYWEDIGTIKSF 190 (353)
Q Consensus 170 ~-~i~~~~~-~g~w~dIgtp~~y 190 (353)
+ ++.+|.+ +++|.|+|||++|
T Consensus 208 g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 208 GKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred CCEEEEEEeccccEEEcCChHhc
Confidence 5 6999999 6999999999987
No 49
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.62 E-value=1.9e-15 Score=138.44 Aligned_cols=157 Identities=17% Similarity=0.265 Sum_probs=111.9
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--cCHHHHHHHHHH---CCCcEEEEEEEeCCCCCCcceEEEE
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADITISCAAVGESRASDYGLVKI 90 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--~dl~~~~~~h~~---~~a~~tll~~~~~~~~~~~~g~v~~ 90 (353)
+..+||++|++.+..++.+ ..+++.++|++||+++. .+|.++++.|.+ +++.+|+.+.+..+ .+.||++..
T Consensus 81 p~~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~--~t~yGyI~~ 156 (274)
T cd02509 81 PEGRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP--ETGYGYIEA 156 (274)
T ss_pred CCCCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC--CCCeEEEEe
Confidence 4467999999999998863 22457899999999886 567777765543 67788888887654 578999999
Q ss_pred CCCC-----CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCC---------
Q 018622 91 DNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN--------- 156 (353)
Q Consensus 91 d~~g-----~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~--------- 156 (353)
|++. +|.+|.|||+.+++++.. ....+++|+|+|+|++++|...+++..|...
T Consensus 157 ~~~~~~~~~~V~~f~EKP~~~~a~~~~-------------~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~ 223 (274)
T cd02509 157 GEKLGGGVYRVKRFVEKPDLETAKEYL-------------ESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAA 223 (274)
T ss_pred CCcCCCCceEEeEEEECcChHHHHHHh-------------hcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence 8653 899999999866543211 1124689999999999888777765543211
Q ss_pred -------chhhhhhhh---------hhh-cCcEEEEEecceEeEcCCHHH
Q 018622 157 -------DFGSEIIPA---------AIM-EHDVQAYIFRDYWEDIGTIKS 189 (353)
Q Consensus 157 -------~~~~d~l~~---------l~~-~~~i~~~~~~g~w~dIgtp~~ 189 (353)
.+..+.++. .++ ..++.+++.+..|.|+|++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 224 AGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred cCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 111233333 122 267888999999999999865
No 50
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.62 E-value=5.2e-15 Score=125.18 Aligned_cols=125 Identities=14% Similarity=0.281 Sum_probs=95.7
Q ss_pred CCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhh
Q 018622 209 PKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL 284 (353)
Q Consensus 209 ~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~ 284 (353)
+...+.+.+.+++++.|.. +.+. +++||++|.|+ ++.|. +++|+++|.|++++.|.++++..+
T Consensus 10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~------------- 76 (163)
T cd05636 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG------------- 76 (163)
T ss_pred CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC-------------
Confidence 4444555555666666643 5554 58889999998 67775 699999999999999999888877
Q ss_pred cCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC------------------------CCcccccCCCCceEEccCeEE
Q 018622 285 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK------------------------DDVQEADRPELGFYIRSGITI 340 (353)
Q Consensus 285 ~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~------------------------~~~~~~~~~~~~~~i~~~~~v 340 (353)
+.|++++.+.+++|++++.|++++++.+. ..+++.+.++.++.|..+ +.
T Consensus 77 ------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~ 149 (163)
T cd05636 77 ------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VK 149 (163)
T ss_pred ------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cE
Confidence 89999999999999999999999988652 234455556666666555 35
Q ss_pred ecCCcEECCCccC
Q 018622 341 IMEKATIEDGMVI 353 (353)
Q Consensus 341 ig~~~~i~~g~vv 353 (353)
||++++|++|++|
T Consensus 150 ig~~~~i~agsvV 162 (163)
T cd05636 150 IGPGSWVYPGCVV 162 (163)
T ss_pred ECCCCEECCCcEe
Confidence 6888888888875
No 51
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.58 E-value=1.6e-14 Score=128.93 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=107.4
Q ss_pred ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622 18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 97 (353)
Q Consensus 18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 97 (353)
.+|++++++.++.++. ++|++++||++++. ++++.|.++++++|+++.+..+.....|+....|+ +++.
T Consensus 78 ~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 146 (229)
T cd02523 78 ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLDDA-GVLL 146 (229)
T ss_pred hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeeecCc-cceE
Confidence 5799999999999884 78999999999865 56777888888999988874433344566555443 7899
Q ss_pred EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHh---hCC--CCCchhhhhhhhhhhcCc-
Q 018622 98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSNDFGSEIIPAAIMEHD- 171 (353)
Q Consensus 98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~---~~~--~~~~~~~d~l~~l~~~~~- 171 (353)
.+.+||..+. ...+.++|+|+|++++|..+.+. ..+ ...++.+++++.++++.+
T Consensus 147 ~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~ 206 (229)
T cd02523 147 GIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGV 206 (229)
T ss_pred eecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCe
Confidence 9999986543 13578999999999998755332 111 123556789999887444
Q ss_pred -EEEEEecceEeEcCCHHHHHHHH
Q 018622 172 -VQAYIFRDYWEDIGTIKSFYEAN 194 (353)
Q Consensus 172 -i~~~~~~g~w~dIgtp~~y~~a~ 194 (353)
+..+.. ++|.|||+|++|++|+
T Consensus 207 ~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 207 KVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred eEEEcCC-CCEEEeCCHHHHHhhC
Confidence 445555 8999999999999873
No 52
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.57 E-value=6.9e-14 Score=127.19 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=47.1
Q ss_pred eEcCCHHHHHHHHHhhccCCCc-cc------ccCCCCceecCCCCCCCeEEec-eeee-ce------EECCCcEEC-ceE
Q 018622 182 EDIGTIKSFYEANMALTKESPA-FH------FYDPKTPFYTSPRFLPPTKIDN-CRIK-DA------IISHGCFLR-ECT 245 (353)
Q Consensus 182 ~dIgtp~~y~~a~~~ll~~~~~-~~------~~~~~~~i~~~~~i~~~~~i~~-~~i~-~~------~ig~~~~i~-~~~ 245 (353)
+-..+|.-.+....+++.+.+. .. .++|.+.+..++.++++++|+. +.|. ++ +||++|+|+ ++.
T Consensus 76 Lv~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~ 155 (338)
T COG1044 76 LVVKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTV 155 (338)
T ss_pred EEeCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcE
Confidence 3334466666665555543211 11 3345555555555666666652 4442 34 444444444 222
Q ss_pred E-eeeEEcCCcEECCCCEEeceEEECCccccch
Q 018622 246 V-EHSIVGERSRLDYGVELKDTVMLGADYYQTE 277 (353)
Q Consensus 246 v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~ 277 (353)
+ .+++|++++.||++|.|+...+++.+.++..
T Consensus 156 i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a 188 (338)
T COG1044 156 IHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYA 188 (338)
T ss_pred EcCCCEEecCcEECCceEECCCCEEccCccccc
Confidence 2 2455555555555555555555555555444
No 53
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.57 E-value=2.1e-14 Score=124.94 Aligned_cols=142 Identities=22% Similarity=0.276 Sum_probs=96.2
Q ss_pred CCCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEEC-CccccchhHH-HHh
Q 018622 208 DPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLG-ADYYQTESEI-ASL 283 (353)
Q Consensus 208 ~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~-~~~~~~~~~~-~~~ 283 (353)
++.+.+.+++.++++++|+. +.+.++.|+++|.|+ ++.+.+++|++++.|++++.|+..+.++ +..++...+. .+.
T Consensus 25 ~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ 104 (193)
T cd03353 25 DPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKST 104 (193)
T ss_pred CCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecce
Confidence 34444555555666666653 667777888888888 6777888888888888888887554444 3334444433 245
Q ss_pred hcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCC-------cccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 284 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 284 ~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
++++ +.|++.+.+.+|+||+++.||+++.+.+... +++.++++.++.+..+ ..||++++|++|++|
T Consensus 105 ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V 177 (193)
T cd03353 105 IGEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI 177 (193)
T ss_pred EcCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence 5555 6777777777899999999999998876432 3344444444444444 357999999999875
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.56 E-value=4e-14 Score=138.89 Aligned_cols=163 Identities=16% Similarity=0.258 Sum_probs=111.9
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--cCHHHHHHHH---HHCCCcEEEEEEEeCCCCCCcceEEEE
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSH---VDRDADITISCAAVGESRASDYGLVKI 90 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--~dl~~~~~~h---~~~~a~~tll~~~~~~~~~~~~g~v~~ 90 (353)
+.++|||+|+..|..++.+.. .+++.++|++||++.. .+|.++++++ .++++.+|+...+..+ .+.||++..
T Consensus 81 p~~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p--~t~YGyI~~ 157 (468)
T TIGR01479 81 PVGRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHP--ETGYGYIRR 157 (468)
T ss_pred ccccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCC--CCCceEEEe
Confidence 567899999999887774200 1345699999998764 3488887764 4456667777766544 578999999
Q ss_pred CC------CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC---------
Q 018622 91 DN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--------- 155 (353)
Q Consensus 91 d~------~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~--------- 155 (353)
|+ .++|.+|.|||+.++++++ +..++++||+|+|+|+++.|...+++..|..
T Consensus 158 ~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~ 224 (468)
T TIGR01479 158 GEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVE 224 (468)
T ss_pred CCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 73 2589999999986543221 1113469999999999776655555443311
Q ss_pred --------Cchhhhhhhh---------hhhc-CcEEEEEecceEeEcCCHHHHHHHH
Q 018622 156 --------NDFGSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEAN 194 (353)
Q Consensus 156 --------~~~~~d~l~~---------l~~~-~~i~~~~~~g~w~dIgtp~~y~~a~ 194 (353)
..+..++++. ++++ .++.+.+.+..|.|+|++++++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 225 ASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred hccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 1111234442 2233 5789999999999999999998864
No 55
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.56 E-value=1.1e-14 Score=128.99 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=95.6
Q ss_pred ccccccHHHHHHH--HHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHC-----CCcEEEEEEEeCCCCC----Cc
Q 018622 16 NWFQGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR-----DADITISCAAVGESRA----SD 84 (353)
Q Consensus 16 ~~~lGT~~al~~a--~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~-----~a~~tll~~~~~~~~~----~~ 84 (353)
+...|||+|++.. +.++. ++|+|++||++++.|+.+++++|+++ ++++|+++.+++++.. ..
T Consensus 85 ~~~~~~~~al~~~~~~~~~~-------~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~ 157 (217)
T cd04197 85 EDCRSLGDALRDLDAKGLIR-------GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGE 157 (217)
T ss_pred CCcCccchHHHHHhhccccC-------CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCC
Confidence 4567899999654 33443 68999999999999999999999984 8899999988765331 23
Q ss_pred ceEEEECCC-CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHH
Q 018622 85 YGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 144 (353)
Q Consensus 85 ~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl 144 (353)
++++.+|++ ++|+.|.|||..+....+.++.+++..+++. .+++++.++|+|+|++++|
T Consensus 158 ~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 158 EFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred ceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 678888866 8999999999877655556666666666654 4678999999999999875
No 56
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.54 E-value=1e-13 Score=121.32 Aligned_cols=112 Identities=46% Similarity=0.818 Sum_probs=94.2
Q ss_pred CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
++++++|||+||+++++++++ .++++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 88 ~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------------------ 146 (200)
T cd02508 88 GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------------------ 146 (200)
T ss_pred CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------------------
Confidence 347889999999999999962 12478999999999999999999999999988888765
Q ss_pred CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC-CCCchhhhhhhhhhhcCcE
Q 018622 94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGSEIIPAAIMEHDV 172 (353)
Q Consensus 94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~-~~~~~~~d~l~~l~~~~~i 172 (353)
+++|+|+|++++|..+++.... ...++.+|+++.+++++++
T Consensus 147 --------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v 188 (200)
T cd02508 147 --------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKI 188 (200)
T ss_pred --------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcE
Confidence 1679999999999767665322 2346788999999999999
Q ss_pred EEEEecceEeEc
Q 018622 173 QAYIFRDYWEDI 184 (353)
Q Consensus 173 ~~~~~~g~w~dI 184 (353)
.+|.++|+|.||
T Consensus 189 ~~~~~~g~w~di 200 (200)
T cd02508 189 YAYEFNGYWADI 200 (200)
T ss_pred EEEEeCCeEecC
Confidence 999999999986
No 57
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.53 E-value=2.2e-13 Score=127.34 Aligned_cols=47 Identities=11% Similarity=-0.070 Sum_probs=27.7
Q ss_pred eEeEcCCHHHHHHHHHhhccCCC-cccccCCCCceecCCCCCCCeEEe
Q 018622 180 YWEDIGTIKSFYEANMALTKESP-AFHFYDPKTPFYTSPRFLPPTKID 226 (353)
Q Consensus 180 ~w~dIgtp~~y~~a~~~ll~~~~-~~~~~~~~~~i~~~~~i~~~~~i~ 226 (353)
.++-+++|...+..-..++...+ ....++|.+.+++++.++++++|.
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~ 113 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIG 113 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEEC
Confidence 46778899877766666664332 223355666666655555555553
No 58
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.51 E-value=2.9e-13 Score=122.11 Aligned_cols=165 Identities=15% Similarity=0.175 Sum_probs=107.8
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-EE-ecCHHHHHHHHHHCCCcEEEEEEEeCC----CCCCcceEEE
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGE----SRASDYGLVK 89 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i~-~~dl~~~~~~h~~~~a~~tll~~~~~~----~~~~~~g~v~ 89 (353)
+++.||+++...+. .+.. ...+.|++++||+ +. ..+++++++.|+++++++++++.+..+ ..++.++++
T Consensus 71 ~~~~gt~~~~~~~~-~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 145 (245)
T PRK05450 71 DHPSGTDRIAEAAA-KLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV- 145 (245)
T ss_pred cCCCchHHHHHHHH-hcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-
Confidence 45678887654433 3320 1236699999998 44 567899999988777777777666522 224567766
Q ss_pred ECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchh--hhhhhhhh
Q 018622 90 IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG--SEIIPAAI 167 (353)
Q Consensus 90 ~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~--~d~l~~l~ 167 (353)
+|++|+|+.|.|||..+.... .+. + +..+.+.++|+|+|++++|..+.+.. +...+.. .+.++.+.
T Consensus 146 ~d~~g~v~~~~e~~~~~~~~~--~~~-----~----~~~~~~~~~Giy~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 213 (245)
T PRK05450 146 LDADGRALYFSRAPIPYGRDA--FAD-----S----APTPVYRHIGIYAYRRGFLRRFVSLP-PSPLEKIESLEQLRALE 213 (245)
T ss_pred eCCCCcEEEecCCCCCCCCCc--ccc-----c----cCccccEEEEEEecCHHHHHHHHhCC-CCccccchhHHHHHHHH
Confidence 888899999999985331100 000 0 00247999999999999998765422 2211111 11223223
Q ss_pred hcCcEEEEEecc-eEeEcCCHHHHHHHHHhh
Q 018622 168 MEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 197 (353)
Q Consensus 168 ~~~~i~~~~~~g-~w~dIgtp~~y~~a~~~l 197 (353)
+..++.++..++ +|.|||+|++|.+|++.+
T Consensus 214 ~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 214 NGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 346899999996 999999999999998754
No 59
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.50 E-value=3.4e-13 Score=105.16 Aligned_cols=103 Identities=32% Similarity=0.531 Sum_probs=85.9
Q ss_pred CeEEec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc
Q 018622 222 PTKIDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 300 (353)
Q Consensus 222 ~~~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~ 300 (353)
|++|+. +.+++++||++|.|+++.+.+|+|+++|.|++++.|.+++++++ +.|+.++.+.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 355653 77788999999999988999999999999999999999999988 8999999999
Q ss_pred ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622 301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI 347 (353)
Q Consensus 301 ~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i 347 (353)
+|+|++++.|++++.+.+..... . .+..+..++.++|+.++++
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~-~---~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEED-R---ARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred eEEECCCCEECCCCEECCCcccc-c---ccceEcCCeEEEEecccCC
Confidence 99999999999999998763221 1 1445567777788877653
No 60
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.49 E-value=2.1e-13 Score=123.96 Aligned_cols=143 Identities=13% Similarity=0.236 Sum_probs=67.0
Q ss_pred CCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEec------------eEEECC
Q 018622 208 DPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD------------TVMLGA 271 (353)
Q Consensus 208 ~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~------------~v~~~~ 271 (353)
+|.+.+.+++.+++++.|++ +.+. ++.||++|.|+ ++.|. +++||++|.|+++|.|++ .+.+++
T Consensus 6 ~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~ 85 (262)
T PRK05289 6 HPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGD 85 (262)
T ss_pred CCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECC
Confidence 44444555554444444443 3332 45555555555 33333 456666666666666553 233332
Q ss_pred c-cccchhHHH-Hh-hcCCCcceEeCCCeEEc-------ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEe
Q 018622 272 D-YYQTESEIA-SL-LAEGKVPIGVGRNTKIR-------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITII 341 (353)
Q Consensus 272 ~-~~~~~~~~~-~~-~~~~~~~~~ig~~~~i~-------~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vi 341 (353)
+ .++..+.+. +. ...+. +.||+++.|. +|+||+++.+++++.+.+...+++.+.++.++.|..+ +.|
T Consensus 86 ~~~I~e~~~I~~~~~~~~~~--t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~-v~I 162 (262)
T PRK05289 86 NNTIREFVTINRGTVQGGGV--TRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQF-VRI 162 (262)
T ss_pred CCEECCCeEEecccccCCCe--eEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCC-CEE
Confidence 2 222222221 00 00000 3445444443 3444444444444444444444444444444444444 246
Q ss_pred cCCcEECCCccC
Q 018622 342 MEKATIEDGMVI 353 (353)
Q Consensus 342 g~~~~i~~g~vv 353 (353)
|++++|++||+|
T Consensus 163 g~~~~Ig~gs~V 174 (262)
T PRK05289 163 GAHAMVGGMSGV 174 (262)
T ss_pred CCCCEEeeecce
Confidence 888888888875
No 61
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.49 E-value=3.2e-13 Score=122.45 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=34.0
Q ss_pred eEeCCCeEE-cceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 291 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 291 ~~ig~~~~i-~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
+.|++++.| .+|+||+++.|++++.+..+..+++.+.++.++.|..+ +.||++++|+++++|
T Consensus 109 ~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 109 NLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF-CRIGRHAMVGGGSGV 171 (254)
T ss_pred CEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC-cEECCCCEECcCCEE
Confidence 344444444 24455555555555544444445555555555555545 345888888888764
No 62
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.49 E-value=4.2e-13 Score=120.62 Aligned_cols=158 Identities=14% Similarity=0.222 Sum_probs=105.7
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHC-CCcEEEEEEEeCCCC----CCcceEE
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR-DADITISCAAVGESR----ASDYGLV 88 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~-~a~~tll~~~~~~~~----~~~~g~v 88 (353)
.+++||++ +..+...+.. ..+.|++++||+ +...+++.+++.|.+. ++++++++.+.+++. ...|+ |
T Consensus 71 ~~~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 144 (239)
T cd02517 71 DHPSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVK-V 144 (239)
T ss_pred ccCchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCE-E
Confidence 44678986 5555555541 136799999997 4567899999988776 788898888865411 22334 5
Q ss_pred EECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhh--hh
Q 018622 89 KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIP--AA 166 (353)
Q Consensus 89 ~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~--~l 166 (353)
.+|++|+|+.|.+||..+... +. +....++++|+|+|++++|+.+.+.. ....+ ..+.++ .+
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~--~~------------~~~~~~~~~Giy~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 208 (239)
T cd02517 145 VLDKDGYALYFSRSPIPYPRD--SS------------EDFPYYKHIGIYAYRRDFLLRFAALP-PSPLE-QIESLEQLRA 208 (239)
T ss_pred EECCCCCEEEecCCCCCCCCC--CC------------CCCceeEEEEEEEECHHHHHHHHhCC-Cchhh-hhhhHHHHHH
Confidence 567789999998765322100 00 00136899999999999998665421 11111 123332 34
Q ss_pred hhc-CcEEEEEecceEeEcCCHHHHHHHHH
Q 018622 167 IME-HDVQAYIFRDYWEDIGTIKSFYEANM 195 (353)
Q Consensus 167 ~~~-~~i~~~~~~g~w~dIgtp~~y~~a~~ 195 (353)
+++ .++.++..+++|.|||||++|.+|++
T Consensus 209 ~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 209 LENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred HHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 555 46999999999999999999999874
No 63
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.48 E-value=2.5e-13 Score=123.54 Aligned_cols=145 Identities=18% Similarity=0.234 Sum_probs=91.5
Q ss_pred cCCCCceecCCCCCCCeEEec-eee-eceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEE-------------
Q 018622 207 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVML------------- 269 (353)
Q Consensus 207 ~~~~~~i~~~~~i~~~~~i~~-~~i-~~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~------------- 269 (353)
+.++..|.+++.|++++.|.. +.| .++.||++|+|. ++.|. ++.||++|.|+++++|+...-.
T Consensus 120 ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q 199 (338)
T COG1044 120 IGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQ 199 (338)
T ss_pred cCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcce
Confidence 345566666666666666653 555 367777777777 56664 4888888888888888754221
Q ss_pred -CCccccchhHHH--HhhcCCCc-ceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEE----
Q 018622 270 -GADYYQTESEIA--SLLAEGKV-PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI---- 340 (353)
Q Consensus 270 -~~~~~~~~~~~~--~~~~~~~~-~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~v---- 340 (353)
+...++..+|+. +.+.++.. .|.|+.++.|. .+.|++||.||++|.+.+..++.+.+.||+.+.|++.+.+
T Consensus 200 ~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~ 279 (338)
T COG1044 200 IGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHL 279 (338)
T ss_pred eceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCce
Confidence 122223333332 22222211 15667777776 4778888888888888888888888888888888766443
Q ss_pred -ecCCcEECCCc
Q 018622 341 -IMEKATIEDGM 351 (353)
Q Consensus 341 -ig~~~~i~~g~ 351 (353)
||++++|++.+
T Consensus 280 ~IgD~~~I~~~~ 291 (338)
T COG1044 280 EIGDGVTIGARS 291 (338)
T ss_pred EEcCCCEEeccc
Confidence 55555555443
No 64
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.47 E-value=8.5e-13 Score=124.83 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=27.2
Q ss_pred eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE-----EecCCcEECCCccC
Q 018622 302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMVI 353 (353)
Q Consensus 302 ~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----vig~~~~i~~g~vv 353 (353)
+.|+++|.||+++.+.....+...+++|+++.|+.+.. .||++++|+++++|
T Consensus 238 v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 238 VQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred eEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 34444455555554444444444455555555544433 35777777777654
No 65
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.47 E-value=7e-13 Score=119.70 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=42.9
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE-----EecCCcEECCCccC
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMVI 353 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----vig~~~~i~~g~vv 353 (353)
++||+++.+. ++.|+++|.||+++.+.++..+...++|+++++|+.++. .||++++|++|++|
T Consensus 102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V 170 (255)
T PRK12461 102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRI 170 (255)
T ss_pred EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceE
Confidence 6677777665 666777777777777777666666666666666665533 36777777777764
No 66
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=2.1e-13 Score=126.78 Aligned_cols=99 Identities=22% Similarity=0.369 Sum_probs=72.1
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhHH-HHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccc
Q 018622 248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEA 325 (353)
Q Consensus 248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~ 325 (353)
++.||++|+||++|+|.+|.+-.+..+..++.+ .|.++++ +.||+.++++ ++.|+++++||..+.+.+. .++..
T Consensus 286 ~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~---~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a-~ig~g 361 (460)
T COG1207 286 NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG---ATVGPFARLRPGAVLGADVHIGNFVEVKKA-TIGKG 361 (460)
T ss_pred eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC---cccCCccccCCcCcccCCCeEeeeEEEecc-cccCC
Confidence 455555555555555555555544444444444 2444444 8999999999 9999999999999999874 58888
Q ss_pred cCCCCceEEccCeEEecCCcEECCCcc
Q 018622 326 DRPELGFYIRSGITIIMEKATIEDGMV 352 (353)
Q Consensus 326 ~~~~~~~~i~~~~~vig~~~~i~~g~v 352 (353)
++.++.+||++ ..||+++.||+||+
T Consensus 362 sKa~HLtYlGD--A~iG~~~NiGAGtI 386 (460)
T COG1207 362 SKAGHLTYLGD--AEIGENVNIGAGTI 386 (460)
T ss_pred ccccceeeecc--ceecCCceeccceE
Confidence 89999999988 56799999999886
No 67
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.46 E-value=5.6e-13 Score=120.87 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=52.1
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEE-cceEeCCCCEECCCeEEccCCCccccc
Q 018622 248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEAD 326 (353)
Q Consensus 248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~iig~~~~Ig~~~~i~~~~~~~~~~ 326 (353)
+++||++|.|+++|+|..+...+.. .+.++++ +.|++++.| .+|.||+++.|++++.+..+..+++.+
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~~~--------~~~IG~~---~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~ 144 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASGGG--------VTRIGNN---NLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYA 144 (254)
T ss_pred eEEECCCCEECCCCEECCcccCCCC--------cEEECCC---CEECCCCEEccCCEECCCCEECCCCEECCCcEECCCc
Confidence 4556666666666666554332200 0112222 444444444 356666666666666666555566666
Q ss_pred CCCCceEEccCeEEecCCcEECCCccC
Q 018622 327 RPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 327 ~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
.++.++.|..+ +.||++++|+++++|
T Consensus 145 ~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 145 IIGGLVAVHQF-VRIGRYAMIGGLSAV 170 (254)
T ss_pred EEeccCEECCC-cEECCCCEEeeeeeE
Confidence 66666666555 345888888888764
No 68
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.46 E-value=1.5e-12 Score=116.00 Aligned_cols=151 Identities=22% Similarity=0.312 Sum_probs=114.3
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG 94 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g 94 (353)
..+||++++++++.++++ ..+.|++++||. +...++.++++.|.+.++++++++.+.++ +..|+.+..|+++
T Consensus 71 ~~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~ 144 (229)
T cd02540 71 EQLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED--PTGYGRIIRDGNG 144 (229)
T ss_pred CCCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC--CCCccEEEEcCCC
Confidence 347999999999999862 247899999998 44678999999998888888887777654 6789988888789
Q ss_pred CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-C
Q 018622 95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-H 170 (353)
Q Consensus 95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-~ 170 (353)
+|..+.||+.....+ ....++++|+|+|+++.|..+++.... ....+..++++.++++ .
T Consensus 145 ~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~ 207 (229)
T cd02540 145 KVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGL 207 (229)
T ss_pred CEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCC
Confidence 999999987532110 012578999999999877666665332 1234567899999876 5
Q ss_pred cEEEEEecce--EeEcCCHHHH
Q 018622 171 DVQAYIFRDY--WEDIGTIKSF 190 (353)
Q Consensus 171 ~i~~~~~~g~--w~dIgtp~~y 190 (353)
+|.+|.++|| |+.+++|.++
T Consensus 208 ~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 208 KVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEEEEEcCCcceEecCCChHhC
Confidence 7999999865 6778888763
No 69
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.46 E-value=4.9e-13 Score=121.25 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=46.9
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
++||+++.|. ++.|++++.||+++.+.+...+...++|++++.|+.+ +.|..+++|+++++|
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~-~~i~~~v~Ig~~~~I 165 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGL-SAVHQFCRIGRHAMV 165 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCc-ceECCCcEECCCCEE
Confidence 6777777776 6777777777777888777777777888888888777 455777888888764
No 70
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.43 E-value=6.9e-13 Score=110.38 Aligned_cols=100 Identities=17% Similarity=0.345 Sum_probs=61.8
Q ss_pred ceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcc
Q 018622 212 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP 290 (353)
Q Consensus 212 ~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~ 290 (353)
.+.+++.+.|.+.|-+ ++.||+++.|+ +++++.-. ...+||+++.|++.++++.. ...+.++|++
T Consensus 13 ~i~~~a~Va~~A~viG----dV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~-----~~~p~~IG~~--- 78 (176)
T COG0663 13 KIDPTAFVAPSATVIG----DVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHAD-----PGYPVTIGDD--- 78 (176)
T ss_pred CCCCceEECCCCEEEE----eEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecC-----CCCCeEECCC---
Confidence 3445555555555433 45555555555 23332111 33555555666655555542 1134556666
Q ss_pred eEeCCCeEEcceEeCCCCEECCCeEEccCCCcccc
Q 018622 291 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 325 (353)
Q Consensus 291 ~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~ 325 (353)
+.||+++.|++|.|+++|.||.++++.++..+++.
T Consensus 79 vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~ 113 (176)
T COG0663 79 VTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDG 113 (176)
T ss_pred cEEcCccEEEEeEECCCcEEecCceEeCCcEECCC
Confidence 89999999999999999999999999987444333
No 71
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.42 E-value=9.4e-13 Score=123.04 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=37.8
Q ss_pred EeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE-----EecCCcEECCCccC
Q 018622 292 GVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMVI 353 (353)
Q Consensus 292 ~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----vig~~~~i~~g~vv 353 (353)
.||+++.|. .+.|++++.||+++.+.+...+...+++|+++.++.+.. .||++++|+++++|
T Consensus 219 ~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 219 IIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred eecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 444444444 455666666666666666655555666666666654432 36888888887764
No 72
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.42 E-value=2.2e-12 Score=116.97 Aligned_cols=139 Identities=15% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEec------------eEEECCc-c
Q 018622 209 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKD------------TVMLGAD-Y 273 (353)
Q Consensus 209 ~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~------------~v~~~~~-~ 273 (353)
+.+.+..++.|+|.++|.+ ++.|+++|.|+ ++.| .++.||++|.|+++++|+. .+.++.+ .
T Consensus 9 ~~a~Ig~~~~I~~~~~I~~----~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~ 84 (254)
T TIGR01852 9 PGAEIGENVEIGPFCIVGP----GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNT 84 (254)
T ss_pred CCCEECCCCEECCCCEECC----CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCE
Confidence 3333444444444444432 45555555555 3333 3578888888888888863 3444433 1
Q ss_pred ccchhHHH-HhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCc
Q 018622 274 YQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 351 (353)
Q Consensus 274 ~~~~~~~~-~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~ 351 (353)
++....+. ....+ ...+.||+++.|. ++.|++++.||+++.+.++..+...++|++++.|+.+ +.|..+++|++++
T Consensus 85 I~~~~~I~~~~~~~-~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~-~~i~~~v~Ig~~~ 162 (254)
T TIGR01852 85 IREFVTINRGTASG-GGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGL-VAVHQFVRIGRYA 162 (254)
T ss_pred ECCCCEECCcccCC-CCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEecc-CEECCCcEECCCC
Confidence 22222211 11110 0014555555554 5555566666666666666656666666666666666 3446667777766
Q ss_pred cC
Q 018622 352 VI 353 (353)
Q Consensus 352 vv 353 (353)
+|
T Consensus 163 ~I 164 (254)
T TIGR01852 163 MI 164 (254)
T ss_pred EE
Confidence 54
No 73
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.41 E-value=2e-12 Score=111.76 Aligned_cols=99 Identities=16% Similarity=0.348 Sum_probs=67.8
Q ss_pred eecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEe-----ceEEECCccccchhHHHH
Q 018622 213 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIAS 282 (353)
Q Consensus 213 i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~-----~~v~~~~~~~~~~~~~~~ 282 (353)
+.+++.|.+.+.|.+ ++.||++|.|+ ++.|. ..+||++|.||++|+|. ++++.++
T Consensus 11 i~~~~~I~~~a~I~G----~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~----------- 75 (192)
T TIGR02287 11 VHPEAYVHPTAVLIG----DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN----------- 75 (192)
T ss_pred CCCCcEECCCCEEEe----eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-----------
Confidence 444555555555543 45666666666 44443 47889999999999994 4555555
Q ss_pred hhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622 283 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 334 (353)
Q Consensus 283 ~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i 334 (353)
+.|++++.|.+|+|++++.||.++.+.++..+++.+.++.++.+
T Consensus 76 --------~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V 119 (192)
T TIGR02287 76 --------GHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFV 119 (192)
T ss_pred --------CEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEE
Confidence 89999999999999999999999998776444444433333333
No 74
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.40 E-value=2.7e-12 Score=108.51 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=72.6
Q ss_pred ceEECCCcEEC-ceEE----eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCC
Q 018622 232 DAIISHGCFLR-ECTV----EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 306 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v----~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~ 306 (353)
++.||++|.|+ ++.+ ..++||++|.|+++|.|.+++.+... ......++++ +.+..++.+.+++||+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~-----~~~~v~IG~~---~~i~~~~~i~~~~IGd 88 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA-----EPKPMIIGSN---NVFEVGCKCEALKIGN 88 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC-----CCCCeEECCC---CEECCCcEEEeeEECC
Confidence 45566666665 3444 24799999999999999887553210 0000112222 6777788888899999
Q ss_pred CCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCc
Q 018622 307 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 351 (353)
Q Consensus 307 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~ 351 (353)
+|.||+++.+..+..+++.+.++.+++|..+ +.|+++++++.+.
T Consensus 89 ~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~-~~i~~~~vi~g~~ 132 (164)
T cd04646 89 NNVFESKSFVGKNVIITDGCIIGAGCKLPSS-EILPENTVIYGAD 132 (164)
T ss_pred CCEEeCCCEECCCCEECCCCEEeCCeEECCC-cEECCCeEEeCCc
Confidence 9999999999887666666666666666555 2336666665543
No 75
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.39 E-value=3.4e-12 Score=110.96 Aligned_cols=95 Identities=16% Similarity=0.334 Sum_probs=58.2
Q ss_pred cCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCc
Q 018622 215 TSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKV 289 (353)
Q Consensus 215 ~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~ 289 (353)
+.+.+++++.|.. +.+. ++.||++|.|+ ++.|.++.|+++|.|++++.|+++++.++..++....+ .+.++++
T Consensus 14 ~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~-- 91 (193)
T cd03353 14 GDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG-- 91 (193)
T ss_pred CCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC--
Confidence 3344445555542 4443 68889999998 68888899999999999999998888777433333322 1333333
Q ss_pred ceEeCCCeEEcceEeCCCCEECC
Q 018622 290 PIGVGRNTKIRNCIIDKNVKIGK 312 (353)
Q Consensus 290 ~~~ig~~~~i~~~iig~~~~Ig~ 312 (353)
+.|++++.+.+++|++++.|+.
T Consensus 92 -~~Ig~~~~i~~s~ig~~~~i~~ 113 (193)
T cd03353 92 -VHIGNFVEIKKSTIGEGSKANH 113 (193)
T ss_pred -CEECCcEEEecceEcCCCEecc
Confidence 3444444444444444444443
No 76
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.37 E-value=5e-12 Score=106.00 Aligned_cols=96 Identities=19% Similarity=0.438 Sum_probs=66.5
Q ss_pred ceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEE-----eceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcc
Q 018622 232 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 301 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~ 301 (353)
++.||++|.|+ ++.|. .+.||++|.|+++|+| .++++..+ +.|++++.+.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~ 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILHG 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEEC
Confidence 45666666665 44454 4789999999999999 44555555 89999999999
Q ss_pred eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622 302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI 347 (353)
Q Consensus 302 ~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i 347 (353)
++||+++.||.++++..+..+++.+.++.++++..+ +.|++++++
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~-~~i~~~~~v 123 (155)
T cd04745 79 CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAG-TVIPPRSLI 123 (155)
T ss_pred CEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCC-CEeCCCCEE
Confidence 999999999999999876555555555544444433 233444443
No 77
>PLN02296 carbonate dehydratase
Probab=99.36 E-value=5.3e-12 Score=114.37 Aligned_cols=114 Identities=11% Similarity=0.249 Sum_probs=69.6
Q ss_pred CCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhh
Q 018622 210 KTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL 284 (353)
Q Consensus 210 ~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~ 284 (353)
...+.+++.+.|++.+.+ ++.||++|.|+ ++.|. +++||++|.|+++|+|..+..-.. .....+++
T Consensus 52 ~p~I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~-----g~~~~siI 122 (269)
T PLN02296 52 APVVDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLS-----GKVLPTII 122 (269)
T ss_pred CCccCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCccc-----CCCCCcEe
Confidence 334555566666666544 45555555555 34443 468999999999998863210000 00001223
Q ss_pred cCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEc
Q 018622 285 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIR 335 (353)
Q Consensus 285 ~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~ 335 (353)
+++ +.|++++.|.+|+||++|.||.++++..+..+++.+.++.+++|.
T Consensus 123 G~~---v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~ 170 (269)
T PLN02296 123 GDN---VTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVR 170 (269)
T ss_pred CCC---CEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCCEEe
Confidence 333 899999999999999999999999998765554444444444443
No 78
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.36 E-value=4e-12 Score=120.26 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=28.6
Q ss_pred eEeCCCeEEc-----ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCcc
Q 018622 291 IGVGRNTKIR-----NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 352 (353)
Q Consensus 291 ~~ig~~~~i~-----~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~v 352 (353)
+.||+++.|. +++||+++.|+.++.|..+..+++.+.+..++.|.++ +.||+++.|+.++.
T Consensus 210 v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~-~~iG~~~~ig~~~~ 275 (343)
T PRK00892 210 VEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS-TKIGRYCMIGGQVG 275 (343)
T ss_pred cEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCC-CEECCceEECCCCE
Confidence 4555555553 3444444444444444444334444444443334333 33466665555543
No 79
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.36 E-value=5.6e-12 Score=93.70 Aligned_cols=65 Identities=15% Similarity=0.456 Sum_probs=43.6
Q ss_pred ECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622 235 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 313 (353)
Q Consensus 235 ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~ 313 (353)
||++|.|+ ++.+.++.|+++|.|+++|.|++++++++ +.|++++.|.++++++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 44555555 44455677777777777777777666666 67777777777777777777777
Q ss_pred eEEcc
Q 018622 314 VVIVN 318 (353)
Q Consensus 314 ~~i~~ 318 (353)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 77653
No 80
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.36 E-value=5.9e-12 Score=124.49 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=64.7
Q ss_pred ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhHH-HHhhcCCCcceEeCCCeEEc-ceEeCCC
Q 018622 232 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKN 307 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~i~-~~iig~~ 307 (353)
++.||++|.|+ ++.|. ++.||++|+|+++|.|+++++++++.+++.+.+ .++++++ +.|++++.+. +++||++
T Consensus 270 ~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~---~~ig~~~~i~~~~~Ig~~ 346 (481)
T PRK14358 270 TVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAG---SDVGPFARLRPGTVLGEG 346 (481)
T ss_pred CcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCc---eEECCccEEcCCcEECCC
Confidence 45566666666 34443 478999999999999999999998888777765 3667777 7888888886 7888888
Q ss_pred CEECCCeEEc
Q 018622 308 VKIGKDVVIV 317 (353)
Q Consensus 308 ~~Ig~~~~i~ 317 (353)
+.|++++.+.
T Consensus 347 ~~Ig~~~~i~ 356 (481)
T PRK14358 347 VHIGNFVETK 356 (481)
T ss_pred CEECCCEEEC
Confidence 8888877764
No 81
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.35 E-value=7.6e-12 Score=108.46 Aligned_cols=103 Identities=16% Similarity=0.296 Sum_probs=64.7
Q ss_pred eecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCC
Q 018622 213 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 287 (353)
Q Consensus 213 i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~ 287 (353)
+++++.|.+.+.|.+ ++.||++|.|+ ++.|+ .++|+++|.||++|+|...... .++++++
T Consensus 13 i~~~a~I~~~a~I~g----~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~-----------~siIg~~ 77 (196)
T PRK13627 13 VHPTAFVHPSAVLIG----DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDT-----------DTIVGEN 77 (196)
T ss_pred cCCCeEECCCCEEEC----ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCC-----------CCEECCC
Confidence 334444555555433 45555555555 34443 3578888888888888654211 1222333
Q ss_pred CcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceE
Q 018622 288 KVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFY 333 (353)
Q Consensus 288 ~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~ 333 (353)
+.||+++.+.+|+||+++.||.++++.++..+++.+.++.+++
T Consensus 78 ---~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~ 120 (196)
T PRK13627 78 ---GHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSF 120 (196)
T ss_pred ---CEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCE
Confidence 8999999999999999999999999877644444433333333
No 82
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.35 E-value=4e-12 Score=114.77 Aligned_cols=139 Identities=13% Similarity=0.211 Sum_probs=70.5
Q ss_pred CCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhH-HHH
Q 018622 208 DPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESE-IAS 282 (353)
Q Consensus 208 ~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~-~~~ 282 (353)
+|.+.|.+++.+++++.|++ +.+. ++.||++|.|+ ++.|. ++.||+++.|++++.|+.... + +....+ ...
T Consensus 3 hp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq--~--~~~~g~~~~v 78 (255)
T PRK12461 3 HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQ--D--FTYKGEESRL 78 (255)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCc--c--ccccCcccee
Confidence 45555555555555555543 4442 56666666666 44443 456666666666665553100 0 000000 011
Q ss_pred hhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCe-----EEecCCcEECCCccC
Q 018622 283 LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMVI 353 (353)
Q Consensus 283 ~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~-----~vig~~~~i~~g~vv 353 (353)
.+|++ +.|++++.|. ++..+..+.||+++.+..+..+.++|.+++++.|+.++ +.||+++.|+++++|
T Consensus 79 ~IG~~---~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V 152 (255)
T PRK12461 79 EIGDR---NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLV 152 (255)
T ss_pred EECCc---eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEE
Confidence 22222 6666666665 33344455566665555555555556666555554432 346777777776653
No 83
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.35 E-value=1.1e-11 Score=111.35 Aligned_cols=155 Identities=17% Similarity=0.276 Sum_probs=101.9
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCC-cEEEEEEEeCC-C---CCCcceEE
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCAAVGE-S---RASDYGLV 88 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a-~~tll~~~~~~-~---~~~~~g~v 88 (353)
....||++ ++.+...+. .+.|++++||. +...++.++++.|.+.+. ++++++.+.+. . ++..+++
T Consensus 72 ~~~~g~~~-~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 143 (238)
T PRK13368 72 DHLSGTDR-LAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV- 143 (238)
T ss_pred cCCCccHH-HHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-
Confidence 44567884 666666553 37899999996 567889999999876653 56666665442 1 1344554
Q ss_pred EECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC-Cchhh-hhhhhh
Q 018622 89 KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS-NDFGS-EIIPAA 166 (353)
Q Consensus 89 ~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~-~~~~~-d~l~~l 166 (353)
.++++|+++.|.|+|.....+.+ ....+.++|+|+|++++|..+ +...... .++.. +++ .+
T Consensus 144 ~~~~~g~v~~~~~~~~~~~~~~~---------------~~~~~~n~giy~~~~~~l~~~-~~~~~~~~~~~~~~~~~-~~ 206 (238)
T PRK13368 144 VVDKNGDALYFSRSPIPSRRDGE---------------SARYLKHVGIYAFRRDVLQQF-SQLPETPLEQIESLEQL-RA 206 (238)
T ss_pred EECCCCCEEEeeCCCCCCCCCCC---------------CCceeEEEEEEEeCHHHHHHH-HcCCCChhhhhhhHHHH-HH
Confidence 44567899999876522111000 013478999999999999864 3211111 11222 455 55
Q ss_pred hh-cCcEEEEEecceEeEcCCHHHHHHHHH
Q 018622 167 IM-EHDVQAYIFRDYWEDIGTIKSFYEANM 195 (353)
Q Consensus 167 ~~-~~~i~~~~~~g~w~dIgtp~~y~~a~~ 195 (353)
++ ..++.+|..+++|+|||+|++|.+|+.
T Consensus 207 ~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 207 LEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred HHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 54 456999999999999999999999875
No 84
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.34 E-value=6e-12 Score=114.49 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=28.3
Q ss_pred CceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEEC
Q 018622 211 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLG 270 (353)
Q Consensus 211 ~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~ 270 (353)
..|++++.|.|.+.|+. +.|. .++|+++++|+ ++.|. +++|..+++||++|.|...+.++
T Consensus 3 ~~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig 66 (262)
T PRK05289 3 AKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIG 66 (262)
T ss_pred cccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceec
Confidence 34666666666666654 3332 23444444444 23331 34444444445555554444443
No 85
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.34 E-value=4.9e-12 Score=124.23 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=61.6
Q ss_pred CCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCcc
Q 018622 216 SPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVP 290 (353)
Q Consensus 216 ~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~~ 290 (353)
.+.+++++.|.. +.|. +++||++|.|+ ++.|.+++|+++|.|+++|.|+++++..+..++....+ .+.++++
T Consensus 261 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~--- 337 (451)
T TIGR01173 261 TVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAG--- 337 (451)
T ss_pred ccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCC---
Confidence 344455555653 5554 58888899998 67888899999999999999988887777544444433 2444444
Q ss_pred eEeCCCeEEcceEeCCCCEECCCe
Q 018622 291 IGVGRNTKIRNCIIDKNVKIGKDV 314 (353)
Q Consensus 291 ~~ig~~~~i~~~iig~~~~Ig~~~ 314 (353)
+.|++++.+.+++||+++.|+..+
T Consensus 338 ~~Ig~~~~i~~~~ig~~~~i~~~~ 361 (451)
T TIGR01173 338 VHIGNFVETKNARIGKGSKAGHLS 361 (451)
T ss_pred cEEccceeecCcEECCCcEeccee
Confidence 455555555555555554444433
No 86
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.34 E-value=6.1e-12 Score=110.42 Aligned_cols=52 Identities=19% Similarity=0.100 Sum_probs=28.1
Q ss_pred ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 301 ~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
++.+++++.|+.++.+.+...+++.++++.++.|..+ +.||+++.|+++++|
T Consensus 132 ~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~-~~ig~~~~i~~~s~v 183 (205)
T cd03352 132 NVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGH-LTIGDGVVIGAGSGV 183 (205)
T ss_pred CCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence 3444444444444444444445555555555555554 345777777777754
No 87
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.33 E-value=3e-12 Score=113.39 Aligned_cols=119 Identities=15% Similarity=0.222 Sum_probs=92.6
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHH--HHHCCCcEEEEEEEeCCCC-------CCcce
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVGESR-------ASDYG 86 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~--h~~~~a~~tll~~~~~~~~-------~~~~g 86 (353)
....|||++++++++++. ++|+|++||+++++|+.+++++ +..+++++|+.+...++.. ...++
T Consensus 86 ~~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
T cd02507 86 CESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEED 158 (216)
T ss_pred CCCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCc
Confidence 457899999999999885 7899999999999999999975 5556667776666544321 45689
Q ss_pred EEEECCC---CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHH
Q 018622 87 LVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 144 (353)
Q Consensus 87 ~v~~d~~---g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl 144 (353)
++.+|++ .+++.+.|++.... .+.+..+++..+|. +..++++.++|+|+|++++|
T Consensus 159 ~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 159 VIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred EEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 9999987 57888888876542 34456777777775 45688999999999999874
No 88
>PLN02472 uncharacterized protein
Probab=99.31 E-value=1.1e-11 Score=110.75 Aligned_cols=122 Identities=14% Similarity=0.211 Sum_probs=72.2
Q ss_pred ceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcC
Q 018622 212 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE 286 (353)
Q Consensus 212 ~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~ 286 (353)
.+..++.+.|++.+.+ ++.||++|.|+ +++++ ..+||+++.|+++|+|.....-.. .....+++++
T Consensus 61 ~i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~-----~i~~~tvIG~ 131 (246)
T PLN02472 61 KVAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPT-----GLPAETLIDR 131 (246)
T ss_pred ccCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCcccc-----CCCCCcEECC
Confidence 3455555666665544 45555555555 33332 368999999999999953110000 0000112222
Q ss_pred CCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCcc
Q 018622 287 GKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 352 (353)
Q Consensus 287 ~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~v 352 (353)
+ +.||+++.|.+|+|++++.||.++++..+.. |++++.|+.+ +++.++..|++|++
T Consensus 132 ~---v~IG~~s~L~~~~Igd~v~IG~~svI~~gav------Ig~~~~Ig~g-svV~~g~~Ip~g~~ 187 (246)
T PLN02472 132 Y---VTIGAYSLLRSCTIEPECIIGQHSILMEGSL------VETHSILEAG-SVLPPGRRIPTGEL 187 (246)
T ss_pred C---CEECCCcEECCeEEcCCCEECCCCEECCCCE------ECCCCEECCC-CEECCCCEeCCCCE
Confidence 2 8999999999999999999999999887643 4444444444 23355555555543
No 89
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.31 E-value=1e-11 Score=108.61 Aligned_cols=34 Identities=6% Similarity=0.069 Sum_probs=15.1
Q ss_pred ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEec
Q 018622 232 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD 265 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~ 265 (353)
++.||++|.|+ ++.+.+++||+++.|++++.|.+
T Consensus 19 ~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~ 53 (204)
T TIGR03308 19 ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIY 53 (204)
T ss_pred ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEee
Confidence 34444444444 34444444444444444444443
No 90
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.30 E-value=2.8e-11 Score=102.37 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=76.9
Q ss_pred cCCCCceecCCCC------CCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccch
Q 018622 207 YDPKTPFYTSPRF------LPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 277 (353)
Q Consensus 207 ~~~~~~i~~~~~i------~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~ 277 (353)
++++..+.+++.+ ++++.|+. +.++ +++|+++|.|+ ++.+.+|+|++++.|+.++.++++++.++
T Consensus 20 ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~------ 93 (163)
T cd05636 20 IGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN------ 93 (163)
T ss_pred EcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC------
Confidence 3444444444444 44444432 5555 58999999999 68899999999999999999999988777
Q ss_pred hHHHHhhcCCCcceEeCCCeEEc-------------------------ceEeCCCCEECCCeEEccCCCcccccCCCCce
Q 018622 278 SEIASLLAEGKVPIGVGRNTKIR-------------------------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGF 332 (353)
Q Consensus 278 ~~~~~~~~~~~~~~~ig~~~~i~-------------------------~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~ 332 (353)
+.|++++.+. +++|++++.||.++.+..+ +
T Consensus 94 -------------~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g------------~ 148 (163)
T cd05636 94 -------------VNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG------------V 148 (163)
T ss_pred -------------CEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC------------c
Confidence 7788887773 4677777777777777655 4
Q ss_pred EEccCeEEecCCcEE
Q 018622 333 YIRSGITIIMEKATI 347 (353)
Q Consensus 333 ~i~~~~~vig~~~~i 347 (353)
.|+.+ +.|+++++|
T Consensus 149 ~ig~~-~~i~agsvV 162 (163)
T cd05636 149 KIGPG-SWVYPGCVV 162 (163)
T ss_pred EECCC-CEECCCcEe
Confidence 45454 344666554
No 91
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.29 E-value=1.5e-11 Score=121.03 Aligned_cols=81 Identities=17% Similarity=0.389 Sum_probs=54.9
Q ss_pred CCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEe
Q 018622 217 PRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 293 (353)
Q Consensus 217 ~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i 293 (353)
+.+++++.|.+ +.+. ++.||++|.|+ ++.|.+|+||++|.|+++|.|+++++.++ +.|
T Consensus 270 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~~I 330 (456)
T PRK14356 270 ATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG-------------------CSV 330 (456)
T ss_pred cEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc-------------------cEE
Confidence 34444444433 4442 58899999998 78888999999999999999988888877 455
Q ss_pred CCCeEEc-ceEeCCCCEECCCeEE
Q 018622 294 GRNTKIR-NCIIDKNVKIGKDVVI 316 (353)
Q Consensus 294 g~~~~i~-~~iig~~~~Ig~~~~i 316 (353)
|+++.|. +++||+++.||.++.+
T Consensus 331 g~~~~i~~~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 331 GPYARLRPGAVLEEGARVGNFVEM 354 (456)
T ss_pred CCceEECCCCEECCCCEecCCcee
Confidence 5555554 4555555555554433
No 92
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=3.4e-11 Score=108.81 Aligned_cols=166 Identities=17% Similarity=0.291 Sum_probs=113.3
Q ss_pred eeecCcccCCCCCCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecC--HHHHHHH---HHHCCCcEEEEEEE
Q 018622 2 FVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQS---HVDRDADITISCAA 76 (353)
Q Consensus 2 ~~~~~~~~~~~~~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~d--l~~~~~~---h~~~~a~~tll~~~ 76 (353)
|+++|.++ .||.|+..+.-.+.. ..++.-++|+.+|++..-. |.+.++. ..+++..+|+...|
T Consensus 80 illEP~gR----------nTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~P 147 (333)
T COG0836 80 IILEPEGR----------NTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPP 147 (333)
T ss_pred eEeccCCC----------CcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 56666666 399999888776653 2334568999999987543 6555554 33466777777776
Q ss_pred eCCCCCCcceEEEECCC------CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHh
Q 018622 77 VGESRASDYGLVKIDNM------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 150 (353)
Q Consensus 77 ~~~~~~~~~g~v~~d~~------g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~ 150 (353)
..+ .+.||++...+. -+|.+|.|||+..+++++. ..+.++||+|+|+|+..++...+++
T Consensus 148 t~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l~e~~~ 212 (333)
T COG0836 148 TRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFLEELKK 212 (333)
T ss_pred CCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHHHHHHh
Confidence 655 579999997542 2799999999987765432 2246899999999999977656665
Q ss_pred hCCCC-------------Cchh---hhhhhh--------h-h-hcCcEEEEEecceEeEcCCHHHHHHHH
Q 018622 151 RYPTS-------------NDFG---SEIIPA--------A-I-MEHDVQAYIFRDYWEDIGTIKSFYEAN 194 (353)
Q Consensus 151 ~~~~~-------------~~~~---~d~l~~--------l-~-~~~~i~~~~~~g~w~dIgtp~~y~~a~ 194 (353)
..|.. .++. .+.+.. . + +..++.+.+.+..|.|+|++.++++..
T Consensus 213 ~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 213 HQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred hCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 54321 0000 111111 1 1 227889999999999999999998644
No 93
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.29 E-value=2.3e-11 Score=90.39 Aligned_cols=77 Identities=13% Similarity=0.404 Sum_probs=68.2
Q ss_pred CCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC
Q 018622 219 FLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 296 (353)
Q Consensus 219 i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 296 (353)
+++++.|+. +.+.++.|+++|.|+ ++.+.+++|++++.|+.+|.|.++++.++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 455666653 667789999999998 68899999999999999999999999988 899999
Q ss_pred eEEcceEeCCCCEECCCe
Q 018622 297 TKIRNCIIDKNVKIGKDV 314 (353)
Q Consensus 297 ~~i~~~iig~~~~Ig~~~ 314 (353)
+.+.+|++++++.|++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEEccCEECCCcEeCCCC
Confidence 999999999999999875
No 94
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.29 E-value=4.1e-11 Score=101.72 Aligned_cols=116 Identities=21% Similarity=0.320 Sum_probs=72.7
Q ss_pred eecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe-----eeEEcCCcEECCCCEEec----eEEECCccccchhHHHH
Q 018622 213 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKD----TVMLGADYYQTESEIAS 282 (353)
Q Consensus 213 i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~-----~~~ig~~~~ig~~~~i~~----~v~~~~~~~~~~~~~~~ 282 (353)
+.+++.|.|.+.|.+ ++.||++|+|+ ++.|. ++.||++|.|++++.|.. .+.++.+
T Consensus 5 ig~~~~I~~~a~i~~----~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~---------- 70 (167)
T cd00710 5 IDPSAYVHPTAVVIG----DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN---------- 70 (167)
T ss_pred eCCCeEECCCCEEEe----eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCC----------
Confidence 334444444444433 34444444444 23332 467888888888888742 3444443
Q ss_pred hhcCCCcceEeCCCeEEcc-eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 283 LLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 283 ~~~~~~~~~~ig~~~~i~~-~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
+.|++++.|.+ ++||+++.||.++.+.+ ..+++.+.++.++.|. + ..|++++.+++++++
T Consensus 71 --------~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v 131 (167)
T cd00710 71 --------VSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVI 131 (167)
T ss_pred --------ceECCCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEE
Confidence 77788888774 88888888888888763 4566777777777774 3 356888888877753
No 95
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.29 E-value=2.6e-11 Score=89.51 Aligned_cols=66 Identities=26% Similarity=0.572 Sum_probs=53.4
Q ss_pred ECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622 235 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 313 (353)
Q Consensus 235 ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~ 313 (353)
|+++|.|+ ++.+.+++||++|+|++++.|++++++++ ++|++++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 56666666 56666788899999998899988888877 78888888888888888888888
Q ss_pred eEEccC
Q 018622 314 VVIVNK 319 (353)
Q Consensus 314 ~~i~~~ 319 (353)
+.+.++
T Consensus 63 ~~i~~~ 68 (79)
T cd03356 63 VRVVNL 68 (79)
T ss_pred CEEcCC
Confidence 887653
No 96
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.26 E-value=6.2e-11 Score=99.14 Aligned_cols=88 Identities=15% Similarity=0.280 Sum_probs=61.1
Q ss_pred ceEECCCcEEC-ceEEee----eEEcCCcEECCCCEEece----EEECCccccchhHHHHhhcCCCcceEeCCCeEEcce
Q 018622 232 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~~----~~ig~~~~ig~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 302 (353)
++.||++|.|+ ++.|.. .+||++|.|+++|.|... ++++++ +.|++++.+.++
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 79 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGA 79 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECc
Confidence 45666666666 454543 588999999999988863 333332 788888888889
Q ss_pred EeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 337 (353)
Q Consensus 303 iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 337 (353)
+||+++.|+.++.+.++..+++.+.++.++.+..+
T Consensus 80 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g 114 (154)
T cd04650 80 KVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG 114 (154)
T ss_pred EECCCCEEcCCCEEeCCCEECCCCEECCCCEECCC
Confidence 99999999999888776555555555554444443
No 97
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.26 E-value=7.5e-11 Score=98.63 Aligned_cols=97 Identities=20% Similarity=0.398 Sum_probs=64.9
Q ss_pred ceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEece----EEECCccccchhHHHHhhcCCCcceEeCCCeEEcce
Q 018622 232 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ 302 (353)
++.||++|.|+ ++.|. .++||++|.|+++|.|.++ .+++++ +.|+.++.+.++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 78 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC 78 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence 45566666666 44443 4689999999999999885 333333 789999999999
Q ss_pred EeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI 347 (353)
Q Consensus 303 iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i 347 (353)
+|++++.|++++.+..+..+++.+.++.++.+..+ +.|+.++++
T Consensus 79 ~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~-~~i~~~~~~ 122 (153)
T cd04645 79 TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPG-KVIPPGSLV 122 (153)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCCEECCC-CEeCCCCEE
Confidence 99999999999888766555555555544444433 223444444
No 98
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.26 E-value=2.4e-11 Score=119.33 Aligned_cols=64 Identities=22% Similarity=0.385 Sum_probs=36.8
Q ss_pred ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCE
Q 018622 232 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 309 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~ 309 (353)
++.||++|+|+ ++.|.+|+||++|.|. .+.+.++++.++ +.|++++.|. +++||+++.
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~-------------------~~ig~~~~i~~~~~ig~~~~ 332 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDD-------------------VSVGPFSRLREGTVLKKSVK 332 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCC-------------------cEECCCcEECCcccccCCcE
Confidence 46666666666 4566666666666664 345566666665 4555555553 355555555
Q ss_pred ECCCeE
Q 018622 310 IGKDVV 315 (353)
Q Consensus 310 Ig~~~~ 315 (353)
||+++.
T Consensus 333 Ig~~~~ 338 (448)
T PRK14357 333 IGNFVE 338 (448)
T ss_pred ecCcee
Confidence 555443
No 99
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.25 E-value=2.2e-11 Score=119.80 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=61.2
Q ss_pred CCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCcce
Q 018622 217 PRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPI 291 (353)
Q Consensus 217 ~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~~~ 291 (353)
+.+++++.|+. +.|. +++||++|.|+ ++.|.+|+|+++|.|+++|.|+++++.++..++..+.+ .+.++++ +
T Consensus 266 ~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~---~ 342 (456)
T PRK09451 266 LTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEG---A 342 (456)
T ss_pred EEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCC---c
Confidence 34556666653 6665 58899999998 78888999999999999999998877777444443332 2333333 4
Q ss_pred EeCCCeEEcceEeCCCCEECCCe
Q 018622 292 GVGRNTKIRNCIIDKNVKIGKDV 314 (353)
Q Consensus 292 ~ig~~~~i~~~iig~~~~Ig~~~ 314 (353)
.||+++.|++++|++++.++..+
T Consensus 343 ~ig~~~~i~~~~i~~~~~~~~~~ 365 (456)
T PRK09451 343 HVGNFVEMKKARLGKGSKAGHLT 365 (456)
T ss_pred eeccceeeeceeeCCCCccCccc
Confidence 44444444444444444444433
No 100
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.25 E-value=4.6e-11 Score=88.10 Aligned_cols=66 Identities=18% Similarity=0.383 Sum_probs=55.1
Q ss_pred ECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622 235 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 313 (353)
Q Consensus 235 ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~ 313 (353)
||++|.|+ ++.+.+++|+++|.|++++.|.+++++++ ++|++++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 56666666 45666789999999999999999888887 89999999999999999999988
Q ss_pred eEEccC
Q 018622 314 VVIVNK 319 (353)
Q Consensus 314 ~~i~~~ 319 (353)
+.+..+
T Consensus 63 ~~i~~~ 68 (79)
T cd05787 63 CTIPPG 68 (79)
T ss_pred CEECCC
Confidence 888654
No 101
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.25 E-value=4.8e-11 Score=104.74 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=27.0
Q ss_pred CCCCceecCCCCCCCeEEec-eee-eceEECCCcEEC-ceEEee-eEEcCCcEECCCCEE
Q 018622 208 DPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVEH-SIVGERSRLDYGVEL 263 (353)
Q Consensus 208 ~~~~~i~~~~~i~~~~~i~~-~~i-~~~~ig~~~~i~-~~~v~~-~~ig~~~~ig~~~~i 263 (353)
++...+.+++.|+++++|.. +.+ .++.||++|.|+ ++.+.+ +.|+++|.|+++++|
T Consensus 11 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 11 GPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 34444444444555555543 444 255566666665 333332 455555555555444
No 102
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.24 E-value=1.1e-11 Score=109.52 Aligned_cols=119 Identities=21% Similarity=0.312 Sum_probs=93.5
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCC-----------CCc
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESR-----------ASD 84 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~-----------~~~ 84 (353)
...+|||++|+.+.+.+. ++|+|++||.+++.++.++++.|+++++.+|+++++.+... ...
T Consensus 84 ~~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04198 84 DEDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADE 156 (214)
T ss_pred CCCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCC
Confidence 567899999999998875 68999999999999999999999999999999998754211 235
Q ss_pred ceEEEECCC-CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHH
Q 018622 85 YGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 144 (353)
Q Consensus 85 ~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl 144 (353)
+.++.+|++ ++++.+.+..+.+ ..+.++.+++..+|. +.++++|.++++|+|++++|
T Consensus 157 ~~~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~~-~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 157 RDVIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHPR-VTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CceEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCCC-EEEEcCcccceEEEEEeeeC
Confidence 677777764 6888776543322 244557778887775 35688999999999999874
No 103
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.24 E-value=3.6e-11 Score=108.47 Aligned_cols=107 Identities=12% Similarity=0.209 Sum_probs=47.1
Q ss_pred CCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhc
Q 018622 209 PKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA 285 (353)
Q Consensus 209 ~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~ 285 (353)
+...+.+.+.+.++++|+. +.+.++.|+.++.|+ ++.| .++.||++|.||++|.|..++.+++.. .+.....++++
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~-~~~~~~~viIg 180 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL-EPLQANPVIIE 180 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCc-cccCcCCeEEc
Confidence 3344444444444444442 333333333333333 2222 235555555555555555555554311 00000123333
Q ss_pred CCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622 286 EGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 286 ~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
++ +.||.++.|. +++||+++.||+++.+..+
T Consensus 181 Dn---v~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 181 DN---CFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred CC---CEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 33 4555555552 5555555555555555544
No 104
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.22 E-value=4.8e-11 Score=118.22 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=37.1
Q ss_pred cCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCc
Q 018622 215 TSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGAD 272 (353)
Q Consensus 215 ~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~ 272 (353)
+.+.+++++.|.. +.|. ++.||++|.|+ ++.|.+++||++|.|+. +.+.++++.++.
T Consensus 270 ~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~ 329 (482)
T PRK14352 270 VDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGA 329 (482)
T ss_pred CCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCC
Confidence 3444555555543 4443 57788888887 67777788888887764 666666666663
No 105
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.19 E-value=1e-10 Score=114.20 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=108.0
Q ss_pred ccccccHHHHHHHHHHhhhhccCC--CCeEEEEeCCeEEecC--HHHHHHHH---HHCCCcEEEEEEEeCCCCCCcceEE
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRN--IENVAILCGDHLYRMD--YMDFIQSH---VDRDADITISCAAVGESRASDYGLV 88 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~--~~~flV~~gD~i~~~d--l~~~~~~h---~~~~a~~tll~~~~~~~~~~~~g~v 88 (353)
+..++||.|+..|..++.+ ... ++.++|+++|++..-. |.+.++.. .+++..+|+...+..+ .+.||++
T Consensus 86 P~~rnTApaialaa~~~~~--~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~P--eTgyGYI 161 (478)
T PRK15460 86 PAGRNTAPAIALAALAAKR--HSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLP--ETGYGYI 161 (478)
T ss_pred CCCCChHHHHHHHHHHHHH--hcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCC--CCCCCeE
Confidence 3345799999888877753 222 4568999999987432 54444432 2346667777766555 5789999
Q ss_pred EECCC---------CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCC---
Q 018622 89 KIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN--- 156 (353)
Q Consensus 89 ~~d~~---------g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~--- 156 (353)
..++. -+|.+|.|||+..+++++ ++.+.++||+|||+|+.+.|...+++..|...
T Consensus 162 ~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~y-------------l~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~ 228 (478)
T PRK15460 162 RRGEVSAGEQDTVAFEVAQFVEKPNLETAQAY-------------VASGEYYWNSGMFLFRAGRYLEELKKYRPDILDAC 228 (478)
T ss_pred EeCCccccccccCceEeeEEEeCCCHHHHHHH-------------HHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHH
Confidence 98642 269999999998776543 12245799999999999977666655443100
Q ss_pred -----------ch--h-hhhhhhh---------hh-cCcEEEEEecceEeEcCCHHHHHHHH
Q 018622 157 -----------DF--G-SEIIPAA---------IM-EHDVQAYIFRDYWEDIGTIKSFYEAN 194 (353)
Q Consensus 157 -----------~~--~-~d~l~~l---------~~-~~~i~~~~~~g~w~dIgtp~~y~~a~ 194 (353)
++ . .+.++.+ ++ ..++.+.+.+..|.|+|++.++++..
T Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 229 EKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 00 0 2223222 11 25688889999999999999998754
No 106
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.19 E-value=1.3e-10 Score=95.51 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=14.2
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
+.|++++.|. ++.||+++.|++++++..+
T Consensus 82 ~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~ 111 (139)
T cd03350 82 VFIGANCEVVEGVIVGKGAVLAAGVVLTQS 111 (139)
T ss_pred CEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence 4455554443 4455555555555554444
No 107
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.19 E-value=2.5e-10 Score=98.71 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=39.9
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE-----EecCCcEECCCc
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGM 351 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----vig~~~~i~~g~ 351 (353)
|.||.+..+. ++-|.++|.||.+|++.|+..+..-..+++.++|++... .||+.+.||..|
T Consensus 107 T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S 173 (260)
T COG1043 107 TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLS 173 (260)
T ss_pred EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheecccc
Confidence 5666666665 566677777777777777766666666666666655432 367777776654
No 108
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.18 E-value=1.2e-10 Score=104.13 Aligned_cols=129 Identities=12% Similarity=0.192 Sum_probs=61.7
Q ss_pred CCCceecCCCCCCCeEEeceeee-ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCC
Q 018622 209 PKTPFYTSPRFLPPTKIDNCRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 287 (353)
Q Consensus 209 ~~~~i~~~~~i~~~~~i~~~~i~-~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~ 287 (353)
|.+.+..++.+++++.|..+.+. ++.||++|.|. .+++||++|+||++|.|..++.+++. ..+....+++++++
T Consensus 105 p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~----~~a~IG~~v~IG~nv~I~~g~~IgG~-~ep~~~~~ViIgDn 179 (269)
T TIGR00965 105 PGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVD----TWATVGSCAQIGKNVHLSGGVGIGGV-LEPLQANPTIIEDN 179 (269)
T ss_pred CCcEECCCcEECCCCEEeeeEEcCCcEECCCCEEC----CCcEECCCCEECCCCEEcCCcccCCC-cccCCCCCeEECCC
Confidence 34444444445555554432221 35566666665 23566666666666666655555431 11111112333334
Q ss_pred CcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCc
Q 018622 288 KVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 351 (353)
Q Consensus 288 ~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~ 351 (353)
|.||+++.|. +++||+++.||++++|..+..+.+.. .+ .++. ..|++++++-||+
T Consensus 180 ---v~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~-~g--~v~~---~~vp~~svv~~g~ 235 (269)
T TIGR00965 180 ---CFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE-TG--EIHY---GRVPAGSVVVSGN 235 (269)
T ss_pred ---CEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc-CC--ceee---eecCCCcEEecCC
Confidence 5566665554 55666666666666665544333321 11 1111 1357777776654
No 109
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.16 E-value=4.3e-10 Score=94.24 Aligned_cols=95 Identities=15% Similarity=0.278 Sum_probs=72.0
Q ss_pred ccCCCCceecCCCCCCCeEEec-eeee----ceEECCCcEEC-ceEE-----eeeEEcCCcEECCCCEEeceEEECCccc
Q 018622 206 FYDPKTPFYTSPRFLPPTKIDN-CRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYY 274 (353)
Q Consensus 206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~----~~~ig~~~~i~-~~~v-----~~~~ig~~~~ig~~~~i~~~v~~~~~~~ 274 (353)
++++++.+...+.++++++|+. +.+. .+.||++|.|+ ++.| .+++|+++|.|+.++++.++.+.++
T Consensus 8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~--- 84 (155)
T cd04745 8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN--- 84 (155)
T ss_pred EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC---
Confidence 3455666666677777777753 6665 37888888888 5777 4688999999999988888766655
Q ss_pred cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622 275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
+.|+.++.|. +++|++++.|++++.+..+
T Consensus 85 ----------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~ 114 (155)
T cd04745 85 ----------------ALVGMNAVVMDGAVIGEESIVGAMAFVKAG 114 (155)
T ss_pred ----------------CEECCCCEEeCCCEECCCCEECCCCEeCCC
Confidence 7888888887 5888888888888887654
No 110
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=5.3e-11 Score=115.31 Aligned_cols=90 Identities=12% Similarity=0.313 Sum_probs=77.8
Q ss_pred CceecCCCCCCCeEEe-ceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCC
Q 018622 211 TPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 288 (353)
Q Consensus 211 ~~i~~~~~i~~~~~i~-~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~ 288 (353)
..+..++.|+.++.|+ ++.|.||+||+||.|| ++.|.+|.||.+|+||+||+|++++++++
T Consensus 328 ~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~----------------- 390 (673)
T KOG1461|consen 328 VIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD----------------- 390 (673)
T ss_pred ccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC-----------------
Confidence 3444555667777776 4888999999999999 89999999999999999999999999998
Q ss_pred cceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622 289 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 289 ~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
+.|+.++++. +|+||.++.+|++-++--+
T Consensus 391 --v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 391 --VKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred --cEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 8999999996 8999999999998777654
No 111
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.16 E-value=1e-10 Score=101.05 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=41.7
Q ss_pred ceEeCCCeEEc-ceEe------C-CCCEECCCeEEccCCCcccccCCCCceEEccCeEE-----ecCCcEECCCc
Q 018622 290 PIGVGRNTKIR-NCII------D-KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGM 351 (353)
Q Consensus 290 ~~~ig~~~~i~-~~ii------g-~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~v-----ig~~~~i~~g~ 351 (353)
.+.||+++.|+ .+.| | .-+.||++..+.-+..+..+|+||+.+++..++++ ||+.++||-.+
T Consensus 81 ~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 81 RLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred EEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 46777777776 3333 2 34567777777777778888888888888777553 66666666543
No 112
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.16 E-value=1.8e-10 Score=113.05 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=45.4
Q ss_pred eEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCccccc
Q 018622 249 SIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEAD 326 (353)
Q Consensus 249 ~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~ 326 (353)
+.||++|.|+.++.|.++++.++..+++++.+ .++++++ +.||+++.+.+++|++++.++..+.+.+ ..+++.+
T Consensus 287 ~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~---~~Ig~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~ 362 (446)
T PRK14353 287 VTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEG---AKVGNFVEVKNAKLGEGAKVNHLTYIGD-ATIGAGA 362 (446)
T ss_pred CEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCC---eEEcCceEEeceEECCCCEECCeeEEcC-cEEcCCc
Confidence 34444444444444444443333334333333 3677777 8999999999888888877666655533 2344444
Q ss_pred CCCCce
Q 018622 327 RPELGF 332 (353)
Q Consensus 327 ~~~~~~ 332 (353)
.++.++
T Consensus 363 ~Ig~~~ 368 (446)
T PRK14353 363 NIGAGT 368 (446)
T ss_pred EECCce
Confidence 444443
No 113
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.15 E-value=2.6e-10 Score=84.47 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=51.5
Q ss_pred eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECC
Q 018622 233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 312 (353)
Q Consensus 233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~ 312 (353)
+.|++++.|+ .+++|+++|+||++|.|++++++++ +.|++++.|.++++++++.|++
T Consensus 6 ~~I~~~~~i~----~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIG----PNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEEC----CCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 4555555555 3578888999999999999888887 7899999999999999999999
Q ss_pred CeEEccC
Q 018622 313 DVVIVNK 319 (353)
Q Consensus 313 ~~~i~~~ 319 (353)
++.+.++
T Consensus 63 ~~~~~~~ 69 (80)
T cd05824 63 WTRLENV 69 (80)
T ss_pred CcEEecC
Confidence 8887653
No 114
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.15 E-value=2.8e-10 Score=88.73 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=53.0
Q ss_pred eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECC
Q 018622 233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 312 (353)
Q Consensus 233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~ 312 (353)
+.|+++|. |.+|+||++|.|+ ++.|.+++++++ ++|++++.|.+|+|++++.||+
T Consensus 2 ~~i~~~~~-----i~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~ 56 (104)
T cd04651 2 PYIGRRGE-----VKNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGR 56 (104)
T ss_pred ceecCCCE-----EEeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECC
Confidence 34555554 4579999999999 999999999988 8999999999999999999999
Q ss_pred CeEEcc
Q 018622 313 DVVIVN 318 (353)
Q Consensus 313 ~~~i~~ 318 (353)
++.+.+
T Consensus 57 ~~~i~~ 62 (104)
T cd04651 57 NAVIRR 62 (104)
T ss_pred CCEEEe
Confidence 999964
No 115
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.15 E-value=2.9e-10 Score=83.86 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=64.6
Q ss_pred CCCCeEEe-ceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC
Q 018622 219 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 296 (353)
Q Consensus 219 i~~~~~i~-~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 296 (353)
+++++.|. ++.+.++.|+++|.|+ ++.+.+++|+++++|+++|.|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 45666775 3777789999999998 78899999999999999999999998877 899999
Q ss_pred eEEcc-eEeCCCCEECC
Q 018622 297 TKIRN-CIIDKNVKIGK 312 (353)
Q Consensus 297 ~~i~~-~iig~~~~Ig~ 312 (353)
+.+.+ +++++++.|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99986 88888888764
No 116
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.15 E-value=1.5e-10 Score=113.92 Aligned_cols=79 Identities=13% Similarity=0.293 Sum_probs=39.9
Q ss_pred ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCcceEeCCCeEEcceEeCCCC
Q 018622 232 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGRNTKIRNCIIDKNV 308 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~~i~~~iig~~~ 308 (353)
++.||++|.|+ ++.|.+++||++|.|+. +.+.++++..+..++..+.+ .+.++++ ++|++++.|.+++|++++
T Consensus 283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~---~~i~~~~~i~~~~i~~~~ 358 (458)
T PRK14354 283 NTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRPGSVIGEE---VKIGNFVEIKKSTIGEGT 358 (458)
T ss_pred ceEECCCCEECCCcEEeccEECCCCEEEE-EEEeCCEECCCcEECCceEecCCCEEeCC---cEECCceEEeeeEECCCC
Confidence 46667777776 56666677777777763 55556655555333332222 1333333 344444444444444444
Q ss_pred EECCCe
Q 018622 309 KIGKDV 314 (353)
Q Consensus 309 ~Ig~~~ 314 (353)
.++..+
T Consensus 359 ~i~~~~ 364 (458)
T PRK14354 359 KVSHLT 364 (458)
T ss_pred Eeccee
Confidence 444333
No 117
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.14 E-value=4.7e-10 Score=98.09 Aligned_cols=58 Identities=12% Similarity=0.319 Sum_probs=37.0
Q ss_pred cCCCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEec
Q 018622 207 YDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD 265 (353)
Q Consensus 207 ~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~ 265 (353)
+++.+.+. .+.+++++.|+. +.+.++.||++|.|+ ++.+.++.||++|.|++++.|..
T Consensus 11 I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 11 LHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred ECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 34444443 345666666654 666667777777777 56666777777777777777664
No 118
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.13 E-value=2.6e-10 Score=112.09 Aligned_cols=65 Identities=25% Similarity=0.423 Sum_probs=40.0
Q ss_pred ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCE
Q 018622 232 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 309 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~ 309 (353)
++.||++|.|+ ++.|.+|+|+++|+|+ ++.+.++++.++ +.|++++.|. +++||++|.
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~-------------------~~I~~~~~I~~~~~Ig~~~~ 339 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDG-------------------VKIGPYAHLRPEAQIGSNCR 339 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCC-------------------cEECCCCEECCCCEEeCceE
Confidence 46677777776 5666677777777764 345555555554 5666666665 466666666
Q ss_pred ECCCeEE
Q 018622 310 IGKDVVI 316 (353)
Q Consensus 310 Ig~~~~i 316 (353)
||+++.+
T Consensus 340 Ig~~~~i 346 (450)
T PRK14360 340 IGNFVEI 346 (450)
T ss_pred ECCCEEE
Confidence 6665554
No 119
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.13 E-value=7.8e-10 Score=96.29 Aligned_cols=21 Identities=24% Similarity=0.022 Sum_probs=12.2
Q ss_pred ceEeEcCCHHHHHHHHHhhcc
Q 018622 179 DYWEDIGTIKSFYEANMALTK 199 (353)
Q Consensus 179 g~w~dIgtp~~y~~a~~~ll~ 199 (353)
..+..++.++...+....+..
T Consensus 61 ~~iiai~~~~~~~~i~~~l~~ 81 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKLKA 81 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHh
Confidence 456667666666655555443
No 120
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.13 E-value=2.1e-10 Score=91.50 Aligned_cols=83 Identities=12% Similarity=0.194 Sum_probs=50.3
Q ss_pred ceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCE
Q 018622 232 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 309 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~ 309 (353)
++.||++|.|+ ++.+ .+++|+++|.|++++.+.+..+.. ..+..++.+.+++||+++.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------------------~~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR--------------------SKIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc--------------------cccccccccCCcEECCCcE
Confidence 56777777776 4444 356777777777777666644333 2444566677777888888
Q ss_pred ECCCeEEccCCCcccccCCCCceEE
Q 018622 310 IGKDVVIVNKDDVQEADRPELGFYI 334 (353)
Q Consensus 310 Ig~~~~i~~~~~~~~~~~~~~~~~i 334 (353)
||+++++..+..+++.+.++.++.+
T Consensus 76 Ig~~~~v~~~~~ig~~~~i~~~~~v 100 (119)
T cd03358 76 IGANATILPGVTIGEYALVGAGAVV 100 (119)
T ss_pred ECcCCEEeCCcEECCCCEEccCCEE
Confidence 8887777655444444444433333
No 121
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.12 E-value=1.1e-09 Score=92.98 Aligned_cols=106 Identities=12% Similarity=0.206 Sum_probs=79.0
Q ss_pred ccCCCCceecCCCCCCCeEEec-eeee-----ceEECCCcEEC-ceEEe-----eeEEcCCcEECCCCEEeceEEECCcc
Q 018622 206 FYDPKTPFYTSPRFLPPTKIDN-CRIK-----DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADY 273 (353)
Q Consensus 206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~-----~~~ig~~~~i~-~~~v~-----~~~ig~~~~ig~~~~i~~~v~~~~~~ 273 (353)
++++.+.+.+++.++++++|.. +.+. ++.||++|.|+ ++.+. ++.||+++.|+.++.|.+.+.+++.
T Consensus 10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~- 88 (167)
T cd00710 10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN- 88 (167)
T ss_pred EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC-
Confidence 3455666666666667777754 5554 37899999998 56663 5889999999999999987777765
Q ss_pred ccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCC
Q 018622 274 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 330 (353)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~ 330 (353)
+.||.++.|.++.||+++.||+++.+.+ ..+++...++.
T Consensus 89 -----------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~-~~i~~~~~v~~ 127 (167)
T cd00710 89 -----------------CFIGFRSVVFNAKVGDNCVIGHNAVVDG-VEIPPGRYVPA 127 (167)
T ss_pred -----------------CEECCCCEEECCEECCCCEEcCCCEEeC-CEeCCCCEECC
Confidence 8999999999999999999999999853 33443333333
No 122
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.11 E-value=3.2e-10 Score=111.66 Aligned_cols=70 Identities=17% Similarity=0.327 Sum_probs=47.5
Q ss_pred ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622 232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 311 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig 311 (353)
++.|+++|.|+ .+++||++|.|+++|+|+++++.++ +.|++++.+.+++|++++.||
T Consensus 274 ~~~I~~~~~I~----~~~~Ig~~~~I~~~~~I~~~~Ig~~-------------------~~I~~~~~i~~~~i~~~~~ig 330 (459)
T PRK14355 274 DTTIYPGVCIS----GDTRIGEGCTIEQGVVIKGCRIGDD-------------------VTVKAGSVLEDSVVGDDVAIG 330 (459)
T ss_pred CCEEeCCcEEe----CCCEECCCCEECCCCEEeCCEEcCC-------------------CEECCCeEEeCCEECCCCEEC
Confidence 45555555554 3689999999999999998887777 667777777666666666666
Q ss_pred CCeEEccCCCccc
Q 018622 312 KDVVIVNKDDVQE 324 (353)
Q Consensus 312 ~~~~i~~~~~~~~ 324 (353)
+++.+..+..+++
T Consensus 331 ~~~~i~~~~~i~~ 343 (459)
T PRK14355 331 PMAHLRPGTELSA 343 (459)
T ss_pred CCCEECCCCEeCC
Confidence 5555544433333
No 123
>PLN02296 carbonate dehydratase
Probab=99.10 E-value=4.2e-10 Score=102.01 Aligned_cols=97 Identities=22% Similarity=0.388 Sum_probs=66.7
Q ss_pred eEECCCcEECceEEeeeEEcCCcEECCCCEEece---EEECCccccchhHHHHhhcCCCcceEeCCCeEEc---------
Q 018622 233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR--------- 300 (353)
Q Consensus 233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~--------- 300 (353)
+.|.+++.|. .++.||++|.|+.+|+|+.. +.++++ +.|++++.|.
T Consensus 59 ~~I~p~A~V~----G~V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g~ 116 (269)
T PLN02296 59 AFVAPSASVI----GDVQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSGK 116 (269)
T ss_pred CEECCCcEEE----cceEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccCC
Confidence 4455555544 35677888888888877765 355543 7777777774
Q ss_pred --ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 301 --NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 301 --~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
+|+||++|+||.++++.+ ..+++.+.|+.++.|.++ ++|+++++|++|++|
T Consensus 117 ~~~siIG~~v~IG~~avI~g-~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 117 VLPTIIGDNVTIGHSAVLHG-CTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred CCCcEeCCCCEECCCceecC-CEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 578888888888887754 456777777777777776 455777777777764
No 124
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.09 E-value=1.1e-09 Score=94.56 Aligned_cols=96 Identities=13% Similarity=0.267 Sum_probs=70.7
Q ss_pred ccCCCCceecCCCCCCCeEEe-ceeee----ceEECCCcEEC-ceEE-----eeeEEcCCcEECCCCEEeceEEECCccc
Q 018622 206 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYY 274 (353)
Q Consensus 206 ~~~~~~~i~~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~-~~~v-----~~~~ig~~~~ig~~~~i~~~v~~~~~~~ 274 (353)
++++.+.+.+.+.|++++.|. ++.|. .++||++|.|+ ++.| .+|+|+++++|+++|.|.++++.++
T Consensus 16 ~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~--- 92 (192)
T TIGR02287 16 YVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN--- 92 (192)
T ss_pred EECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC---
Confidence 345555555666666666665 35554 35777777777 5555 4689999999999999888877776
Q ss_pred cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCC
Q 018622 275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 320 (353)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~ 320 (353)
+.||.++.+. +++||+++.|++++.+..+.
T Consensus 93 ----------------~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~ 123 (192)
T TIGR02287 93 ----------------ALVGMNAVVMDGAVIGENSIVAASAFVKAGA 123 (192)
T ss_pred ----------------CEECCCcccCCCeEECCCCEEcCCCEECCCC
Confidence 7888888886 68888888888888887653
No 125
>PLN02472 uncharacterized protein
Probab=99.08 E-value=6.2e-10 Score=99.61 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=75.9
Q ss_pred ceEECCCcEECceEEeeeEEcCCcEECCCCEEece---EEECCccccchhHHHHhhcCCCcceEeCCCeEEc--------
Q 018622 232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-------- 300 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-------- 300 (353)
++.|.++++|. .++.||+++.|..+++|++. +.++.+ +.|+++|.|.
T Consensus 65 ~~~I~p~a~i~----G~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~ 122 (246)
T PLN02472 65 DAYVAPNVVLA----GQVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTG 122 (246)
T ss_pred CCEECCCCEEe----cCEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccC
Confidence 45666666665 35788999999888888865 666654 7888888884
Q ss_pred ---ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 301 ---NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 301 ---~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
+++||++|+||.++.+. +..+++.+.||.++.|.++ ++||++++|++|++|
T Consensus 123 i~~~tvIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV 176 (246)
T PLN02472 123 LPAETLIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEG-SLVETHSILEAGSVL 176 (246)
T ss_pred CCCCcEECCCCEECCCcEEC-CeEEcCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 58999999999999886 4567788888888888777 566888888888764
No 126
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.08 E-value=1.1e-09 Score=92.29 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=63.4
Q ss_pred ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622 232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 311 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig 311 (353)
++.|+++|+|. +.+.++.||++|.|+++|+|+++..+.+... ......++++ +.|++++.+.+++|++++.||
T Consensus 27 ~~~I~~~~~I~-g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~---~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~~v~Ig 99 (161)
T cd03359 27 KTIIQSDVIIR-GDLATVSIGRYCILSEGCVIRPPFKKFSKGV---AFFPLHIGDY---VFIGENCVVNAAQIGSYVHIG 99 (161)
T ss_pred ceEEcCCCEEe-CCCcceEECCCcEECCCCEEeCCccccCCCc---cccCeEECCc---cEECCCCEEEeeEEcCCcEEC
Confidence 45666666555 1223578999999999999997653332110 0011233444 788999999899999999999
Q ss_pred CCeEEccCCCcccccCCCCceEEccC
Q 018622 312 KDVVIVNKDDVQEADRPELGFYIRSG 337 (353)
Q Consensus 312 ~~~~i~~~~~~~~~~~~~~~~~i~~~ 337 (353)
+++.++.+..+++.+.++.++++..+
T Consensus 100 ~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 100 KNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred CCCEEcCCCEECCCcEECCCCEECCC
Confidence 99988776555544444444444433
No 127
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.06 E-value=2.3e-09 Score=92.57 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=13.7
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~ 318 (353)
+.|++++.+. +++||+++.||.++.+..
T Consensus 139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 4444444443 345555555555554443
No 128
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.06 E-value=3e-09 Score=88.97 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=75.1
Q ss_pred ccCCCCceecCCCCCCCeEEec-eeeec----eEECCCcEEC-ceEEee-----eEEcCCcEECCCCEEeceEEECCccc
Q 018622 206 FYDPKTPFYTSPRFLPPTKIDN-CRIKD----AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYY 274 (353)
Q Consensus 206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~~----~~ig~~~~i~-~~~v~~-----~~ig~~~~ig~~~~i~~~v~~~~~~~ 274 (353)
++++.+.+.+.+.+++++.|.. +.|.+ +.||++|.|+ ++.|.. ++||+++.|+.++.+.++++-++
T Consensus 8 ~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~--- 84 (154)
T cd04650 8 YVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY--- 84 (154)
T ss_pred EECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC---
Confidence 4566677777777888888864 66654 5899999998 677754 78999999999999987765555
Q ss_pred cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622 275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
+.|+.++.+. +++|++++.|++++.+..+
T Consensus 85 ----------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g 114 (154)
T cd04650 85 ----------------VIVGMGAILLNGAKIGDHVIIGAGAVVTPG 114 (154)
T ss_pred ----------------CEEcCCCEEeCCCEECCCCEECCCCEECCC
Confidence 8899998885 7889999999988888765
No 129
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.05 E-value=1.3e-09 Score=92.05 Aligned_cols=98 Identities=14% Similarity=0.181 Sum_probs=69.6
Q ss_pred cCCCCceecCCCCCCCeEEec-eeee----ceEECCCcEEC-ceEEee-----------eEEcCCcEECCCCEEeceEEE
Q 018622 207 YDPKTPFYTSPRFLPPTKIDN-CRIK----DAIISHGCFLR-ECTVEH-----------SIVGERSRLDYGVELKDTVML 269 (353)
Q Consensus 207 ~~~~~~i~~~~~i~~~~~i~~-~~i~----~~~ig~~~~i~-~~~v~~-----------~~ig~~~~ig~~~~i~~~v~~ 269 (353)
+++.+.+.+.+.+++++.|.. +.+. .+.||++|.|+ ++.|.+ +.||+++.++.++.|.++++.
T Consensus 8 I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IG 87 (164)
T cd04646 8 VCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIG 87 (164)
T ss_pred ECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEEC
Confidence 455555666666777777754 5553 36888888888 666754 457788888888888874444
Q ss_pred CCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcc
Q 018622 270 GADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQ 323 (353)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~ 323 (353)
++ +.||+++.|. ++.||+++.||+++++..+..++
T Consensus 88 d~-------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~ 123 (164)
T cd04646 88 NN-------------------NVFESKSFVGKNVIITDGCIIGAGCKLPSSEILP 123 (164)
T ss_pred CC-------------------CEEeCCCEECCCCEECCCCEEeCCeEECCCcEEC
Confidence 44 7888888885 78888888888888887653333
No 130
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.04 E-value=1.6e-09 Score=79.69 Aligned_cols=75 Identities=19% Similarity=0.390 Sum_probs=60.9
Q ss_pred CCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC
Q 018622 219 FLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 296 (353)
Q Consensus 219 i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 296 (353)
+++++.|+. +.+.++.|+++|.|+ ++.+.+++|++++.|++++.|.++++.++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence 456666654 667788999999998 68888999999999999999998888877 788888
Q ss_pred eEEc-ceEeCCCCEECC
Q 018622 297 TKIR-NCIIDKNVKIGK 312 (353)
Q Consensus 297 ~~i~-~~iig~~~~Ig~ 312 (353)
+.|. ++++++++.||+
T Consensus 63 ~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 63 CTIPPGSLISFGVVIGD 79 (79)
T ss_pred CEECCCCEEeCCcEeCc
Confidence 8776 577777776663
No 131
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.04 E-value=1.8e-09 Score=79.95 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=60.2
Q ss_pred CCCeEEec-eee-eceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC
Q 018622 220 LPPTKIDN-CRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 296 (353)
Q Consensus 220 ~~~~~i~~-~~i-~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ 296 (353)
+++++|+. +.+ .+++|+++|.|+ ++.|.+++|++++.|++++.|.++++..+ +.|+++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~ 63 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRW 63 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCC
Confidence 34444432 444 268999999998 78889999999999999999999998888 899999
Q ss_pred eEEcc-eEeCCCCEECC
Q 018622 297 TKIRN-CIIDKNVKIGK 312 (353)
Q Consensus 297 ~~i~~-~iig~~~~Ig~ 312 (353)
+.+.+ +++++++.|++
T Consensus 64 ~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 64 TRLENVTVLGDDVTIKD 80 (80)
T ss_pred cEEecCEEECCceEECC
Confidence 99985 88888877763
No 132
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.03 E-value=1.9e-09 Score=96.49 Aligned_cols=99 Identities=22% Similarity=0.295 Sum_probs=62.7
Q ss_pred CCCCCCeEEeceeeeceEECCCcEECceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCC
Q 018622 217 PRFLPPTKIDNCRIKDAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 295 (353)
Q Consensus 217 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 295 (353)
+++.|++.+.. ++.||++|+|..+.+ .++.||++|.|+.++.|++++.++.+ |+|+.
T Consensus 101 ~rv~p~a~i~~----ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~n------------------v~I~~ 158 (269)
T TIGR00965 101 FRVVPGAAVRQ----GAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLSG 158 (269)
T ss_pred EEECCCcEECC----CcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCC------------------CEEcC
Confidence 34444444432 567777777763322 24567777777777777766666654 67777
Q ss_pred CeEE---------cceEeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622 296 NTKI---------RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 337 (353)
Q Consensus 296 ~~~i---------~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 337 (353)
++.| ..++|+++|.||+++.|.++..+++.+.++.+++|+.+
T Consensus 159 g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~ 209 (269)
T TIGR00965 159 GVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS 209 (269)
T ss_pred CcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCC
Confidence 7766 34788888888888888777555555555555555444
No 133
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=6.1e-10 Score=102.36 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=91.2
Q ss_pred ceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcE
Q 018622 179 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSR 256 (353)
Q Consensus 179 g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ 256 (353)
+.+++++.++-+.+...+-. +-.......+-+.....+++++.|+. +.|+.|+||++|.|+ .+.|.+|+|.++++
T Consensus 300 ~~y~eiN~~k~~~~l~~e~~---~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~ 376 (433)
T KOG1462|consen 300 LSYMEINRDKKLKKLCSEAK---FVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVV 376 (433)
T ss_pred HHHHhhhHHHHHHHhccccc---cccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcE
Confidence 46778886555543322111 10111111233455667889999984 999999999999999 79999999999999
Q ss_pred ECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622 257 LDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 257 ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~ 319 (353)
||+||.|++|++..+ +.||++|.+.+|+||.+-.|.+....++.
T Consensus 377 vg~G~~IensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 377 VGDGVNIENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred ecCCcceecceeccc-------------------ceecCCCeeeeeEecCCcEEccccccccc
Confidence 999999999999988 89999999999999999999987766553
No 134
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.03 E-value=1.4e-09 Score=106.21 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=43.7
Q ss_pred eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeC
Q 018622 228 CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 305 (353)
Q Consensus 228 ~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig 305 (353)
+.+. ++.||++|.|+ ++.+++|+|+++|.|+. +++.++++..+ ++|++++.|.+|.||
T Consensus 260 ~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~-------------------~~i~~~~~i~~~~ig 319 (430)
T PRK14359 260 VEFEGECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPL-------------------AHIRPKSEIKNTHIG 319 (430)
T ss_pred cEEcCceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCC-------------------CEECCCcEEeccEEc
Confidence 4443 58888888888 67777888888888876 66677766665 555555555555555
Q ss_pred CCCEECC
Q 018622 306 KNVKIGK 312 (353)
Q Consensus 306 ~~~~Ig~ 312 (353)
+++.|+.
T Consensus 320 ~~~~i~~ 326 (430)
T PRK14359 320 NFVETKN 326 (430)
T ss_pred CcEEEcc
Confidence 5554433
No 135
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.03 E-value=2.2e-09 Score=96.99 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=64.0
Q ss_pred ecCCCCCCCeEEeceeeeceEECCCcEECceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceE
Q 018622 214 YTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIG 292 (353)
Q Consensus 214 ~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (353)
..++++.|+++++. ++.|+++++|.++.+ .++.|+++|.|+.++.|++++.++.+ ++
T Consensus 101 ~~~~rI~p~a~V~~----ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~n------------------v~ 158 (272)
T PRK11830 101 EAGVRVVPGAVVRR----GAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VH 158 (272)
T ss_pred cCCcEEcCCeEECC----CCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCC------------------cE
Confidence 34444555554443 566666666653222 24566666666666666666555543 67
Q ss_pred eCCCeEEcc---------eEeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622 293 VGRNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 337 (353)
Q Consensus 293 ig~~~~i~~---------~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 337 (353)
|++++.|.+ ++||++|.||.++++..+..+++.+.++.+++|..+
T Consensus 159 I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 159 LSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred ECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 777776653 788888888888888766666666666666666555
No 136
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.03 E-value=2.2e-09 Score=88.27 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=19.0
Q ss_pred eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCC
Q 018622 302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEK 344 (353)
Q Consensus 302 ~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~ 344 (353)
++|++++.||+++++..+..+++.+.++.+++|..+ +.|+++
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~-~~I~~~ 117 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQS-TPIYDR 117 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCC-eEeccc
Confidence 445555555555555444333334444444555444 233444
No 137
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.99 E-value=4.9e-09 Score=87.64 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=75.5
Q ss_pred ccCCCCceecCCCCCCCeEEec-eeeec----eEECCCcEEC-ceEEee-----eEEcCCcEECCCCEEeceEEECCccc
Q 018622 206 FYDPKTPFYTSPRFLPPTKIDN-CRIKD----AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYY 274 (353)
Q Consensus 206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~~----~~ig~~~~i~-~~~v~~-----~~ig~~~~ig~~~~i~~~v~~~~~~~ 274 (353)
++++.+.+.+.+.+++++.|.+ +.|.+ ++||++|.|+ ++.|.. ++|++++.|+.+|.|.++++.++
T Consensus 7 ~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~--- 83 (153)
T cd04645 7 FIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN--- 83 (153)
T ss_pred EECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC---
Confidence 3456666666677777887764 66653 6899999998 677765 59999999999999998776666
Q ss_pred cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622 275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
+.|++++.+. +++|++++.|++++.+..+
T Consensus 84 ----------------~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~ 113 (153)
T cd04645 84 ----------------CLIGMGAIILDGAVIGKGSIVAAGSLVPPG 113 (153)
T ss_pred ----------------CEECCCCEEcCCCEECCCCEECCCCEECCC
Confidence 8999999997 8889999999988887654
No 138
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.95 E-value=4.4e-09 Score=91.25 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=59.6
Q ss_pred cCCCCceecCCCCCCCeEEec-eeeec----eEECCCcEEC-ceEE-----eeeEEcCCcEECCCCEEeceEEECCcccc
Q 018622 207 YDPKTPFYTSPRFLPPTKIDN-CRIKD----AIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQ 275 (353)
Q Consensus 207 ~~~~~~i~~~~~i~~~~~i~~-~~i~~----~~ig~~~~i~-~~~v-----~~~~ig~~~~ig~~~~i~~~v~~~~~~~~ 275 (353)
+++++.+.+.+.|++++.|.. +.|++ ++|+++|.|+ ++.| .+++|+++++||.+|.+.++++-++
T Consensus 19 I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~---- 94 (196)
T PRK13627 19 VHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRD---- 94 (196)
T ss_pred ECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCC----
Confidence 344444445555555555542 44432 3445555555 3333 3577888888888887777765545
Q ss_pred chhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCC
Q 018622 276 TESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 320 (353)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~ 320 (353)
+.||.++.|. ++.||+++.|++++++..+.
T Consensus 95 ---------------v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 95 ---------------ALVGMNSVIMDGAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred ---------------CEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence 7788887776 67788888888888776653
No 139
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.93 E-value=1e-08 Score=85.63 Aligned_cols=97 Identities=11% Similarity=0.206 Sum_probs=66.9
Q ss_pred ccCCCCceecCCCCCCCeEEec-eeee----ceEECCCcEECceEEe------eeEEcCCcEECCCCEEeceEEECCccc
Q 018622 206 FYDPKTPFYTSPRFLPPTKIDN-CRIK----DAIISHGCFLRECTVE------HSIVGERSRLDYGVELKDTVMLGADYY 274 (353)
Q Consensus 206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~----~~~ig~~~~i~~~~v~------~~~ig~~~~ig~~~~i~~~v~~~~~~~ 274 (353)
|++|++.+-.++.|++++.|.. +.++ ...||++|-|.++++. .+.||++++||.+|.|.++.+-++
T Consensus 19 ~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~--- 95 (176)
T COG0663 19 FVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN--- 95 (176)
T ss_pred EECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC---
Confidence 6677777777777888877753 5554 4677888888743332 467777777777777777544444
Q ss_pred cchhHHHHhhcCCCcceEeCCCeEEcc-eEeCCCCEECCCeEEccCCC
Q 018622 275 QTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDD 321 (353)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ig~~~~i~~-~iig~~~~Ig~~~~i~~~~~ 321 (353)
+.||-|+.|-+ |.||++|.||+++.+..+..
T Consensus 96 ----------------~lIGmgA~vldga~IG~~~iVgAgalV~~~k~ 127 (176)
T COG0663 96 ----------------VLIGMGATVLDGAVIGDGSIVGAGALVTPGKE 127 (176)
T ss_pred ----------------cEEecCceEeCCcEECCCcEEccCCcccCCcC
Confidence 67777777764 77777788777777766543
No 140
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.93 E-value=5.6e-09 Score=84.84 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=29.6
Q ss_pred eEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCC
Q 018622 249 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 320 (353)
Q Consensus 249 ~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~ 320 (353)
++|+++|.||++|.|. +. +.+ ....+..++++ +.||.++.| +..||++++||+++++..+.
T Consensus 48 a~Ighd~~IG~~~~I~-~~-l~G-----~~~~pV~IG~~---~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t 108 (147)
T cd04649 48 VIVGKGSDVGGGASIM-GT-LSG-----GGNNVISIGKR---CLLGANSGI-GISLGDNCIVEAGLYVTAGT 108 (147)
T ss_pred EEECCCCEECCCCEEE-EE-CCC-----CcccCEEECCC---CEECCCCEE-eEEECCCCEECCCCEEeCCe
Confidence 5555555555555555 11 111 11122344444 555555555 55566666666665555443
No 141
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.91 E-value=9.5e-09 Score=91.52 Aligned_cols=94 Identities=16% Similarity=0.255 Sum_probs=67.2
Q ss_pred cCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEec--------eEEECCccc
Q 018622 207 YDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD--------TVMLGADYY 274 (353)
Q Consensus 207 ~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~--------~v~~~~~~~ 274 (353)
+++.+.+.+.+.+++++.|.. +.+. ++.||++|.|+ ++.+. +++||++|+||.++.|.+ .++++++
T Consensus 89 I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~-- 166 (231)
T TIGR03532 89 IEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDN-- 166 (231)
T ss_pred ECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCC--
Confidence 345555666666666666653 5554 68888888888 66664 788999999999998875 2333332
Q ss_pred cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622 275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~ 318 (353)
+.||.++.|. ++.||+++.|++++++..
T Consensus 167 ----------------v~IG~gsvI~~g~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 167 ----------------VLIGANAVILEGVRVGKGAVVAAGAIVTE 195 (231)
T ss_pred ----------------cEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 7888888875 788888888888887765
No 142
>PLN02694 serine O-acetyltransferase
Probab=98.89 E-value=6.4e-09 Score=94.10 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=45.8
Q ss_pred eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhH-HHHhhcCCCcceEeCCCeEE-cceEeCCCCEE
Q 018622 233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESE-IASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 310 (353)
Q Consensus 233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~ig~~~~i-~~~iig~~~~I 310 (353)
+.||+++.|.++ ..++||++|.||++|.|..++.+++.. .... -.++++++ +.||.++.| .++.||+++.|
T Consensus 167 A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g--~~~~~r~piIGd~---V~IGagA~Ilggi~IGd~a~I 239 (294)
T PLN02694 167 AKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTG--KACGDRHPKIGDG---VLIGAGATILGNVKIGEGAKI 239 (294)
T ss_pred ceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCcc--cccCCCccEECCC---eEECCeeEECCCCEECCCCEE
Confidence 444445444421 246777777777777777777776521 0000 12344444 666766666 36777777777
Q ss_pred CCCeEEcc
Q 018622 311 GKDVVIVN 318 (353)
Q Consensus 311 g~~~~i~~ 318 (353)
|+++++..
T Consensus 240 GAgSVV~k 247 (294)
T PLN02694 240 GAGSVVLI 247 (294)
T ss_pred CCCCEECC
Confidence 77776654
No 143
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.88 E-value=1.1e-08 Score=88.92 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=10.3
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEE
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVI 316 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i 316 (353)
+.|+.++.+. ++.|++++.|++++++
T Consensus 160 ~~ig~~~~v~~~~~i~~~~~i~~~~~v 186 (201)
T TIGR03570 160 VFIGAGATIIQGVTIGAGAIVGAGAVV 186 (201)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEE
Confidence 3344443333 3344444444444333
No 144
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.88 E-value=9.5e-09 Score=79.49 Aligned_cols=66 Identities=11% Similarity=0.229 Sum_probs=46.1
Q ss_pred ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCE
Q 018622 232 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 309 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~ 309 (353)
+++||++|.|+ ++.|. +++||++|.||. .|.+++++++ +.+++++.|.+++||+++.
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 45666666665 34443 466666676654 4667777766 6788888888888888888
Q ss_pred ECCCeEEcc
Q 018622 310 IGKDVVIVN 318 (353)
Q Consensus 310 Ig~~~~i~~ 318 (353)
||+++.+.|
T Consensus 88 ig~~~~~~~ 96 (101)
T cd05635 88 LGAGTNNSD 96 (101)
T ss_pred ECCCceecc
Confidence 888887765
No 145
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.86 E-value=1.4e-08 Score=87.66 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=4.5
Q ss_pred eEeEcCCH
Q 018622 180 YWEDIGTI 187 (353)
Q Consensus 180 ~w~dIgtp 187 (353)
.+..++++
T Consensus 59 ~iiai~~~ 66 (197)
T cd03360 59 FVVAIGDN 66 (197)
T ss_pred EEEecCCH
Confidence 44555666
No 146
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.85 E-value=8.6e-09 Score=99.07 Aligned_cols=90 Identities=13% Similarity=0.216 Sum_probs=70.8
Q ss_pred cCCCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhc
Q 018622 207 YDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA 285 (353)
Q Consensus 207 ~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~ 285 (353)
+++++.+ ..+.|++++.|.+ .+++|+||++|.|+ ++.|.+|+|+++|.|+++|+|.++++.++
T Consensus 285 i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~-------------- 348 (380)
T PRK05293 285 IAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN-------------- 348 (380)
T ss_pred ECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC--------------
Confidence 3444444 2344566666642 45679999999999 78899999999999999999999888877
Q ss_pred CCCcceEeCCCeEEcc-----eEeCCCCEECCCeEEc
Q 018622 286 EGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIV 317 (353)
Q Consensus 286 ~~~~~~~ig~~~~i~~-----~iig~~~~Ig~~~~i~ 317 (353)
+.|++++.+.+ .+||+++.|+++++|+
T Consensus 349 -----~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 -----AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -----CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999986 7888888888887763
No 147
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.82 E-value=2.6e-08 Score=77.05 Aligned_cols=80 Identities=14% Similarity=0.263 Sum_probs=46.0
Q ss_pred eEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEE
Q 018622 233 AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 310 (353)
Q Consensus 233 ~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~I 310 (353)
+.|+++|.|+ ++.+ ..+.||+++.|+++|.|++.+.++.+ +.|+. .|.+|+|++++.|
T Consensus 12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i 71 (101)
T cd05635 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNK 71 (101)
T ss_pred EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEe
Confidence 4444444444 2222 23666666666666666655555443 55543 3456666666666
Q ss_pred CCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCcc
Q 018622 311 GKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 352 (353)
Q Consensus 311 g~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~v 352 (353)
+.++.+++ ++||+++.|+++++
T Consensus 72 ~~~~~lg~--------------------siIg~~v~ig~~~~ 93 (101)
T cd05635 72 QHDGFLGH--------------------SYLGSWCNLGAGTN 93 (101)
T ss_pred cCcCEEee--------------------eEECCCCEECCCce
Confidence 66655542 57788888888765
No 148
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.78 E-value=5.7e-08 Score=78.98 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=7.0
Q ss_pred EecCCcEECCCcc
Q 018622 340 IIMEKATIEDGMV 352 (353)
Q Consensus 340 vig~~~~i~~g~v 352 (353)
.||++++|++|++
T Consensus 91 ~IG~~~vIGaGsv 103 (147)
T cd04649 91 SLGDNCIVEAGLY 103 (147)
T ss_pred EECCCCEECCCCE
Confidence 3455555555554
No 149
>PRK10502 putative acyl transferase; Provisional
Probab=98.77 E-value=4.7e-08 Score=84.04 Aligned_cols=51 Identities=10% Similarity=0.050 Sum_probs=27.4
Q ss_pred eecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEec
Q 018622 213 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKD 265 (353)
Q Consensus 213 i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~ 265 (353)
+..++.|.+++.|... .+..||++|.|+ ++.+. .+.||++|.|++++.|..
T Consensus 54 iG~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~ 108 (182)
T PRK10502 54 IGKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCT 108 (182)
T ss_pred cCCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEEC
Confidence 3344444555544310 135556666665 33332 467777777777777653
No 150
>PLN02917 CMP-KDO synthetase
Probab=98.76 E-value=1.7e-07 Score=86.71 Aligned_cols=162 Identities=16% Similarity=0.152 Sum_probs=104.9
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEE--EeCCCCCCcceEEE--
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCA--AVGESRASDYGLVK-- 89 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~--~~~~~~~~~~g~v~-- 89 (353)
..+.||+++ ..+.+.++. ..+.+++++||.- ....+.++++.+.+. .++++++. +...+.+..||.+.
T Consensus 117 ~~~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv 190 (293)
T PLN02917 117 SCRNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCV 190 (293)
T ss_pred ccCCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEE
Confidence 456789987 577777752 2468999999993 456789999988654 34444333 22223367899885
Q ss_pred ECCCCCeeEEEeCCC--ccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhh
Q 018622 90 IDNMGRIAQFAEKPS--GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIP 164 (353)
Q Consensus 90 ~d~~g~V~~~~ekp~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~ 164 (353)
+|++|+++.|..++- ...... . +....+.++|+|+|+.+.|. .+.+..++ ...+++|+.
T Consensus 191 ~~~~g~alyfsr~~Ipe~kd~~~----------~----~~~i~~~n~Giy~f~~~~L~-~l~~l~~~n~e~e~yLtdl~- 254 (293)
T PLN02917 191 VDNQGYAIYFSRGLIPYNKSGKV----------N----PQFPYLLHLGIQSYDAKFLK-IYPELPPTPLQLEEDLEQLK- 254 (293)
T ss_pred ECCCCeEEEeecCcCCcCCCccc----------c----cccceEEEEEEEEeCHHHHH-HHHcCCCCcccchhccHHHH-
Confidence 787888775553321 100000 0 00135889999999999998 44443322 234566665
Q ss_pred hhhhc-CcEEEEEecceEeEcCCHHHHHHHHHhhccC
Q 018622 165 AAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKE 200 (353)
Q Consensus 165 ~l~~~-~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~ 200 (353)
++++ .+|.++..+...+-|+|++++.++++.+.++
T Consensus 255 -~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 255 -VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred -HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 4444 5788888766677999999999999877543
No 151
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.75 E-value=6.7e-08 Score=87.63 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=7.3
Q ss_pred eEeCCCCEECCCeEE
Q 018622 302 CIIDKNVKIGKDVVI 316 (353)
Q Consensus 302 ~iig~~~~Ig~~~~i 316 (353)
+.||++|.||.++.+
T Consensus 251 V~IGe~~lIGagA~I 265 (341)
T TIGR03536 251 ISVGEGCLLGANAGI 265 (341)
T ss_pred EEECCCcEECCCCEE
Confidence 444444555554444
No 152
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.75 E-value=1.3e-07 Score=79.70 Aligned_cols=68 Identities=22% Similarity=0.374 Sum_probs=45.0
Q ss_pred eEECCCcEEC-ceEEe-------------eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeE
Q 018622 233 AIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 298 (353)
Q Consensus 233 ~~ig~~~~i~-~~~v~-------------~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~ 298 (353)
+.||++|.|+ ++.|. ++.||+++.|++++.+.++.+..+ +.|++++.
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~-------------------v~Ig~~~~ 103 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSY-------------------VHIGKNCV 103 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCC-------------------cEECCCCE
Confidence 4566666665 44443 356788888888888777666555 67777777
Q ss_pred Ec-ceEeCCCCEECCCeEEccC
Q 018622 299 IR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 299 i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
|. +++|++++.|++++++..+
T Consensus 104 Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 104 IGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred EcCCCEECCCcEECCCCEECCC
Confidence 65 6667777777776666554
No 153
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.73 E-value=3.7e-08 Score=89.11 Aligned_cols=81 Identities=25% Similarity=0.421 Sum_probs=44.3
Q ss_pred ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEE
Q 018622 232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 310 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~I 310 (353)
++.||+++.|++. ...+||++|.||++|.|.+.+.+++..-.. ....+.++++ +.||.|+.|. ++.||+++.|
T Consensus 147 ~a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~~~-~~~~p~IGd~---V~IGaga~Ilggv~IG~~a~I 220 (273)
T PRK11132 147 AAKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGKTS-GDRHPKIREG---VMIGAGAKILGNIEVGRGAKI 220 (273)
T ss_pred cceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcccC-CCcCCEECCC---cEEcCCCEEcCCCEECCCCEE
Confidence 3455555555521 135777777777777777766665421000 0001334444 5666666665 5666666666
Q ss_pred CCCeEEcc
Q 018622 311 GKDVVIVN 318 (353)
Q Consensus 311 g~~~~i~~ 318 (353)
|+++++..
T Consensus 221 GAgSvV~~ 228 (273)
T PRK11132 221 GAGSVVLQ 228 (273)
T ss_pred CCCCEECc
Confidence 66666654
No 154
>PLN02357 serine acetyltransferase
Probab=98.72 E-value=4.8e-08 Score=90.93 Aligned_cols=68 Identities=25% Similarity=0.395 Sum_probs=44.2
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622 248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
.++||++++||++|.|..++.+++...... .-.++++++ +.||.|+.|. ++.||+++.||+++++..+
T Consensus 246 giVIGe~avIGdnV~I~~gVtIGg~g~~~g-~~~piIGd~---V~IGagA~IlggV~IGdga~IGAgSVV~~d 314 (360)
T PLN02357 246 GVVIGETAVVGNNVSILHNVTLGGTGKQSG-DRHPKIGDG---VLIGAGTCILGNITIGEGAKIGAGSVVLKD 314 (360)
T ss_pred ceEECCCCEECCCCEEeCCceecCccccCC-ccCceeCCC---eEECCceEEECCeEECCCCEECCCCEECcc
Confidence 366777777777777777766665311100 112455566 7888887774 7888888888888888754
No 155
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.1e-08 Score=88.33 Aligned_cols=92 Identities=17% Similarity=0.311 Sum_probs=67.9
Q ss_pred ccCCCCceecCCCCCCCeEEe-------ceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccch
Q 018622 206 FYDPKTPFYTSPRFLPPTKID-------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 277 (353)
Q Consensus 206 ~~~~~~~i~~~~~i~~~~~i~-------~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~ 277 (353)
+++|++.++++++|+|++.|+ ++++++|+|-++|.|. +++|.+|+||+++.||.|++++..-+..+-
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~----- 364 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSP----- 364 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCC-----
Confidence 457777777777777776664 3677789999999999 789999999999999999999988776651
Q ss_pred hHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622 278 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 278 ~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~ 319 (353)
.....--+++|..+.+++.+.+.|.
T Consensus 365 -----------------~~~~~a~Tilga~v~v~dev~v~~s 389 (407)
T KOG1460|consen 365 -----------------NLPFAALTILGADVSVEDEVIVLNS 389 (407)
T ss_pred -----------------CCCcceeEEecccceecceeEEeee
Confidence 1112234666677777777666664
No 156
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.72 E-value=6.3e-08 Score=81.64 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=17.8
Q ss_pred eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECC
Q 018622 233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 271 (353)
Q Consensus 233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~ 271 (353)
+.||+++.|++. ..++|++++.||++|.|.+++.++.
T Consensus 68 ~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~ 104 (162)
T TIGR01172 68 ARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGG 104 (162)
T ss_pred CEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECC
Confidence 344444444411 1345555555555555555555543
No 157
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.71 E-value=5.7e-08 Score=85.85 Aligned_cols=107 Identities=11% Similarity=0.173 Sum_probs=61.6
Q ss_pred cCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhh
Q 018622 207 YDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL 284 (353)
Q Consensus 207 ~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~ 284 (353)
+.|.+.+...+++++++.+.. +-|. ++.++.+|.|+ .+.++|..++||++|.|+..+.+.+ .+.+-...+..+
T Consensus 111 I~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd----~~as~G~~a~VGkn~higgGa~I~G-VLep~~a~Pv~I 185 (271)
T COG2171 111 IVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVD----GRASVGSCAQVGKNSHIGGGASIGG-VLEPLQANPVII 185 (271)
T ss_pred ecCccEEeeccEECCCcEEcccceEEECcccCcceEEe----eeeeeeccEEECCCcccCCcceEeE-EecCCCCCCeEE
Confidence 346667777777777777764 5554 67788888887 2334444444444444444433333 223333344455
Q ss_pred cCCCcceEeCCCe-EEcceEeCCCCEECCCeEEccCCC
Q 018622 285 AEGKVPIGVGRNT-KIRNCIIDKNVKIGKDVVIVNKDD 321 (353)
Q Consensus 285 ~~~~~~~~ig~~~-~i~~~iig~~~~Ig~~~~i~~~~~ 321 (353)
+++ |.||.++ .+.++.+|++|.|++++.|..++.
T Consensus 186 gdn---cliGAns~~veGV~vGdg~VV~aGv~I~~~tk 220 (271)
T COG2171 186 GDN---CLIGANSEVVEGVIVGDGCVVAAGVFITQDTK 220 (271)
T ss_pred CCc---cEeccccceEeeeEeCCCcEEecceEEeCCcc
Confidence 555 6666666 444667777777777766665543
No 158
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.71 E-value=9.5e-08 Score=86.20 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=10.6
Q ss_pred eEeEcCC--HHHHHHHHHhhcc
Q 018622 180 YWEDIGT--IKSFYEANMALTK 199 (353)
Q Consensus 180 ~w~dIgt--p~~y~~a~~~ll~ 199 (353)
.|-.-|- ++.+.+....+..
T Consensus 109 ~Wt~~Gp~~l~~f~~~~~~~~~ 130 (319)
T TIGR03535 109 VWTNHGPCAVDDFELTRARLRA 130 (319)
T ss_pred hhhcCCCcchhhhhhhhHHHhc
Confidence 5666665 5555544444433
No 159
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.70 E-value=1.1e-07 Score=69.38 Aligned_cols=34 Identities=12% Similarity=0.367 Sum_probs=20.3
Q ss_pred EECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceE
Q 018622 234 IISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTV 267 (353)
Q Consensus 234 ~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v 267 (353)
.|+++|.|+ ++.|. ++.||++|.|+++|.|.++.
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ 37 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAAT 37 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEecc
Confidence 445555555 33333 37777777777777777653
No 160
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.68 E-value=3.2e-08 Score=78.51 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=76.6
Q ss_pred ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622 232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 311 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig 311 (353)
.++|.++|+|+ +.+.++.+|+.|+++.+++|+...-.-+.....++ --+|+. +.|++.|.+..+.||+.+++|
T Consensus 39 KtIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp---~hiGdh---VFieE~cVVnAAqIgsyVh~G 111 (184)
T KOG3121|consen 39 KTIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFP---VHIGDH---VFIEEECVVNAAQIGSYVHLG 111 (184)
T ss_pred cEEEeeCcEEe-cccccceEcceEEeccccccCCchHHhcCCceeee---eeecce---EEEecceEeehhhheeeeEec
Confidence 58899999998 56778999999999999999977432111110000 111222 778888888889999999999
Q ss_pred CCeEEccCCCcccccCCCCceEEccCeEEecCCcEEC
Q 018622 312 KDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE 348 (353)
Q Consensus 312 ~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~ 348 (353)
.+++|++...+++.|+|.+++++... +++.+.++++
T Consensus 112 knaviGrrCVlkdCc~ild~tVlPpe-t~vppy~~~~ 147 (184)
T KOG3121|consen 112 KNAVIGRRCVLKDCCRILDDTVLPPE-TLVPPYSTIG 147 (184)
T ss_pred cceeEcCceEhhhheeccCCcccCcc-cccCCceEEc
Confidence 99999998888888777776666444 3335555444
No 161
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.67 E-value=1.2e-07 Score=69.18 Aligned_cols=68 Identities=29% Similarity=0.533 Sum_probs=41.8
Q ss_pred eEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcc---------eEeCCCCEECCCeEEccC
Q 018622 249 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 249 ~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~---------~iig~~~~Ig~~~~i~~~ 319 (353)
+.||+++.|++++.|.+.+.++.+ +.|++++.|.+ +.||+++.|+.++.+..
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~- 61 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG- 61 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeC-
Confidence 356777777777777765555554 67777777664 44555555555544433
Q ss_pred CCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622 320 DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353 (353)
Q Consensus 320 ~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv 353 (353)
+ +.||+++.|+++++|
T Consensus 62 -----------------~-~~ig~~~~i~~~s~v 77 (78)
T cd00208 62 -----------------G-VKIGDNAVIGAGAVV 77 (78)
T ss_pred -----------------C-CEECCCCEECcCcEe
Confidence 3 455777777777654
No 162
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.66 E-value=2.1e-07 Score=80.72 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=21.8
Q ss_pred eEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEece
Q 018622 233 AIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDT 266 (353)
Q Consensus 233 ~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~~ 266 (353)
..||++|.|+ ++.+. ++.||++|.|+.++.|.+.
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 5566666665 34332 5777777777777777653
No 163
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.66 E-value=9.7e-08 Score=91.14 Aligned_cols=64 Identities=22% Similarity=0.378 Sum_probs=53.1
Q ss_pred ECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622 235 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 313 (353)
Q Consensus 235 ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~ 313 (353)
+.+.+.|+ .+.+.+|+||++|+|+.+ .+.++++..+ |+|+++|.|.+|+|++++.||.+
T Consensus 280 ~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~ 339 (361)
T TIGR02091 280 LPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRG 339 (361)
T ss_pred CCCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCC
Confidence 34445555 335567999999999986 8899988877 89999999999999999999999
Q ss_pred eEEcc
Q 018622 314 VVIVN 318 (353)
Q Consensus 314 ~~i~~ 318 (353)
+.+.+
T Consensus 340 ~~l~~ 344 (361)
T TIGR02091 340 AVIRN 344 (361)
T ss_pred CEEee
Confidence 99864
No 164
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.65 E-value=1.3e-07 Score=75.35 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=45.8
Q ss_pred eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeC-------
Q 018622 233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID------- 305 (353)
Q Consensus 233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig------- 305 (353)
+.|+++++|+ .+++||++|.|+.++.|.+.+.++.+ +.|++++.+.++.+.
T Consensus 5 ~~I~~~~~i~----~~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ 62 (119)
T cd03358 5 CIIGTNVFIE----NDVKIGDNVKIQSNVSIYEGVTIEDD------------------VFIGPNVVFTNDLYPRSKIYRK 62 (119)
T ss_pred CEECCCcEEC----CCcEECCCcEECCCcEEeCCeEECCC------------------cEEcCCeEEecCCCCccccccc
Confidence 4455555554 25788888888888888655555544 677777777654332
Q ss_pred ---CCCEECCCeEEccCCCcccccCCCCceEE
Q 018622 306 ---KNVKIGKDVVIVNKDDVQEADRPELGFYI 334 (353)
Q Consensus 306 ---~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i 334 (353)
.++.||+++.++.+..+.+.+++++++.|
T Consensus 63 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i 94 (119)
T cd03358 63 WELKGTTVKRGASIGANATILPGVTIGEYALV 94 (119)
T ss_pred cccCCcEECCCcEECcCCEEeCCcEECCCCEE
Confidence 34556666666555433333333333333
No 165
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.64 E-value=1.9e-07 Score=81.27 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=30.8
Q ss_pred ecCCCCCCCeEEeceeeeceEECCCcEEC-ceEE---eeeEEcCCcEECCCCEEec
Q 018622 214 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKD 265 (353)
Q Consensus 214 ~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v---~~~~ig~~~~ig~~~~i~~ 265 (353)
..++.|.+|+++.-. .++.||+++.|+ ++.+ .+..||++|.|+++|.|..
T Consensus 59 g~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~ 112 (203)
T PRK09527 59 GENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV 112 (203)
T ss_pred CCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEe
Confidence 345556666665310 145666666666 4444 2478888888888888863
No 166
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.63 E-value=6.3e-08 Score=85.60 Aligned_cols=99 Identities=22% Similarity=0.287 Sum_probs=72.0
Q ss_pred CCCCCCeEEeceeeeceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeC
Q 018622 217 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 294 (353)
Q Consensus 217 ~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig 294 (353)
++|.|++.+.. +++|++|++|- ++-| .++.++.++.|.-++.++.++.++.+ ++||
T Consensus 109 ~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn------------------~hig 166 (271)
T COG2171 109 VRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN------------------SHIG 166 (271)
T ss_pred eeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC------------------cccC
Confidence 55555555542 57777777777 3544 46888888888888888888888876 8888
Q ss_pred CCeEEcc---------eEeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622 295 RNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 337 (353)
Q Consensus 295 ~~~~i~~---------~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~ 337 (353)
.|+.|.+ ++||+||.||+++++..+..+++.|.+..+.+|..+
T Consensus 167 gGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~ 218 (271)
T COG2171 167 GGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQD 218 (271)
T ss_pred CcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCC
Confidence 8888864 789999999999877666555556555555555544
No 167
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.63 E-value=1.3e-07 Score=90.58 Aligned_cols=61 Identities=21% Similarity=0.441 Sum_probs=52.4
Q ss_pred ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622 232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 311 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig 311 (353)
++.|+++|.| .+|+||++|+|+ +.|++|+++.+ |.|+++|.|.+|+|++++.|+
T Consensus 278 p~~i~~~~~i-----~~~~Ig~~~~i~--~~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~I~ 331 (369)
T TIGR02092 278 PTYYAENSKV-----ENSLVANGCIIE--GKVENSILSRG-------------------VHVGKDALIKNCIIMQRTVIG 331 (369)
T ss_pred CcEEcCCCEE-----EEeEEcCCCEEe--eEEeCCEECCC-------------------CEECCCCEEEeeEEeCCCEEC
Confidence 3555555544 689999999997 46999999988 899999999999999999999
Q ss_pred CCeEEcc
Q 018622 312 KDVVIVN 318 (353)
Q Consensus 312 ~~~~i~~ 318 (353)
+++.+.+
T Consensus 332 ~~~~i~~ 338 (369)
T TIGR02092 332 EGAHLEN 338 (369)
T ss_pred CCCEEEE
Confidence 9999876
No 168
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.62 E-value=1.4e-07 Score=79.72 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=52.4
Q ss_pred eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEEC
Q 018622 233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIG 311 (353)
Q Consensus 233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig 311 (353)
+.||++..|.++ ...+||+.+.||++|.|..++.+++..-... .--.+++++ +.||+|+.|- +-.||+|+.||
T Consensus 74 A~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~---V~IGagAkILG~I~IGd~akIG 147 (194)
T COG1045 74 AKIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNG---VYIGAGAKILGNIEIGDNAKIG 147 (194)
T ss_pred CeECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCC---eEECCCCEEEcceEECCCCEEC
Confidence 344555555522 3467777777777777777777776321111 011456666 7888888876 77888888888
Q ss_pred CCeEEccC
Q 018622 312 KDVVIVNK 319 (353)
Q Consensus 312 ~~~~i~~~ 319 (353)
+|+++..+
T Consensus 148 A~sVVlkd 155 (194)
T COG1045 148 AGSVVLKD 155 (194)
T ss_pred CCceEccC
Confidence 88888654
No 169
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.62 E-value=1.5e-07 Score=85.35 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=14.6
Q ss_pred eEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622 291 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 291 ~~ig~~~~i~~~iig~~~~Ig~~~~i~~~ 319 (353)
|.||.|+.| +..||++|+||+++++..+
T Consensus 257 ~lIGagA~I-GI~IGd~~iIGAGavVtag 284 (341)
T TIGR03536 257 CLLGANAGI-GIPLGDRCTVEAGLYITAG 284 (341)
T ss_pred cEECCCCEE-eeEECCCCEECCCCEEeCC
Confidence 455555555 5555555555555555444
No 170
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.62 E-value=1.3e-07 Score=92.36 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=75.5
Q ss_pred EECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCC-------
Q 018622 234 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK------- 306 (353)
Q Consensus 234 ~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~------- 306 (353)
.+.+.+.+.++.+.+|.||++|.| ++|.|++|++..+ |+||+++.|.+|+|..
T Consensus 294 ~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~ 353 (429)
T PRK02862 294 RYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESS 353 (429)
T ss_pred CCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCcccccc
Confidence 344555555567778999999999 8999999988877 8999999999999965
Q ss_pred ------------CCEECCCeEEccCCCcccccCCCCceEEccCe-----------EEecCC-cEECCCccC
Q 018622 307 ------------NVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----------TIIMEK-ATIEDGMVI 353 (353)
Q Consensus 307 ------------~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~-----------~vig~~-~~i~~g~vv 353 (353)
++.||++|.|.+ ..++..+++++++.+.++. .+|+.+ ++|+.++++
T Consensus 354 ~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 354 EEREELRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred cccccccccCCcccEECCCCEEEE-EEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 699999999975 3456677777777774332 345666 667777654
No 171
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.5e-07 Score=88.05 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=55.9
Q ss_pred EECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECC
Q 018622 234 IISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 312 (353)
Q Consensus 234 ~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~ 312 (353)
...|-+.+. .+.+.+|.|+.||.|.. .|++|++..+ ++|+.+|.|.+|+|-++|.||+
T Consensus 281 ~~~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~ 339 (393)
T COG0448 281 KNLPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGE 339 (393)
T ss_pred CCCCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECC
Confidence 344555555 45678999999999987 9999999998 8999999999999999999999
Q ss_pred CeEEcc
Q 018622 313 DVVIVN 318 (353)
Q Consensus 313 ~~~i~~ 318 (353)
+|.+.+
T Consensus 340 ~~~l~~ 345 (393)
T COG0448 340 GAVLRR 345 (393)
T ss_pred CCEEEE
Confidence 999986
No 172
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.2e-07 Score=88.32 Aligned_cols=25 Identities=40% Similarity=0.605 Sum_probs=10.1
Q ss_pred EeCCCeEEcceEeCCCCEECCCeEE
Q 018622 292 GVGRNTKIRNCIIDKNVKIGKDVVI 316 (353)
Q Consensus 292 ~ig~~~~i~~~iig~~~~Ig~~~~i 316 (353)
.|+.++.|.+|+|.+++.|+.++.+
T Consensus 287 ~I~~~~~i~~Sii~~~~~i~~~~~i 311 (358)
T COG1208 287 TIGNGVEIKNSIIMDNVVIGHGSYI 311 (358)
T ss_pred EECCCcEEEeeEEEcCCEECCCCEE
Confidence 3333344444444444444443333
No 173
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.57 E-value=2.5e-07 Score=71.55 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=10.2
Q ss_pred EcceEeCCCCEECCCeEEcc
Q 018622 299 IRNCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 299 i~~~iig~~~~Ig~~~~i~~ 318 (353)
+..++||+++.|+.++.+..
T Consensus 52 ~~~~~Ig~~~~Ig~~~~i~~ 71 (101)
T cd03354 52 KRHPTIGDNVVIGAGAKILG 71 (101)
T ss_pred CCCCEECCCcEEcCCCEEEC
Confidence 34555555555555555543
No 174
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.57 E-value=1.9e-07 Score=90.98 Aligned_cols=55 Identities=13% Similarity=0.308 Sum_probs=50.6
Q ss_pred eEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622 244 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 244 ~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~ 318 (353)
+.+.+|+||++|+| ++|.|++|+++.+ |+|++++.|.+|+|+++|.||+++.+.+
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~ 377 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR 377 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee
Confidence 45678999999999 7999999998888 8999999999999999999999999965
No 175
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.56 E-value=3.8e-07 Score=71.28 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=21.4
Q ss_pred ceEECCCcEECceEEeeeEEcCCcEECCCCEEece
Q 018622 232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT 266 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~ 266 (353)
++.|+++|.|.+. .++.||++|.|+++|.|.++
T Consensus 7 ~~~I~~~~~i~~~--~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 7 NVYIGPGCVISAG--GGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred CcEECCCCEEecC--CceEECCCCEECCCCEEECC
Confidence 3444444444411 25888888888888888876
No 176
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.56 E-value=2.4e-07 Score=89.94 Aligned_cols=54 Identities=19% Similarity=0.433 Sum_probs=49.8
Q ss_pred EEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622 245 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 245 ~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~ 318 (353)
.+.+++||++|.|+ ++.|+++++..+ |.|++++.|.+|+|+++|.||+++.+.+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~-------------------~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPN-------------------VVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCC-------------------CEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 45789999999999 999999888777 8999999999999999999999999976
No 177
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.54 E-value=3.2e-07 Score=87.33 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=52.9
Q ss_pred ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622 232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 311 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig 311 (353)
+++|+++|.| .+++|++.|.||++|.|+++++.++ +.|+++|.|.+|.|. ++.|+
T Consensus 254 ~~~i~~~~~i-----~~~~i~~~~~Ig~~~~I~~~~i~~~-------------------~~Ig~~~~i~~~~i~-~s~i~ 308 (353)
T TIGR01208 254 RVVVGEGAKI-----VNSVIRGPAVIGEDCIIENSYIGPY-------------------TSIGEGVVIRDAEVE-HSIVL 308 (353)
T ss_pred CEEECCCCEE-----eCCEEECCcEECCCCEEcCcEECCC-------------------CEECCCCEEeeeEEE-eeEEc
Confidence 3555555555 4678888899999999998887777 677777776644442 44444
Q ss_pred CCeEEccC------CCcccccCCCCceEEcc-CeEEecCCcEEC
Q 018622 312 KDVVIVNK------DDVQEADRPELGFYIRS-GITIIMEKATIE 348 (353)
Q Consensus 312 ~~~~i~~~------~~~~~~~~~~~~~~i~~-~~~vig~~~~i~ 348 (353)
+++.+... ..+++.++++.++.+.. ...++|++++|+
T Consensus 309 ~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 309 DESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred CCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 44444332 22334444444444432 123455555553
No 178
>PLN02739 serine acetyltransferase
Probab=98.54 E-value=2.4e-07 Score=85.72 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=20.4
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~ 318 (353)
+.||.|+.|. ++.||+++.||+|+++..
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 6777777775 677777777777777764
No 179
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.52 E-value=3.2e-07 Score=89.81 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=68.7
Q ss_pred CCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCC----------
Q 018622 237 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK---------- 306 (353)
Q Consensus 237 ~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~---------- 306 (353)
+++.+.++.+.+|+|+++|+|+ +|.|++|++..+ |.|+++|.|.+|++..
T Consensus 304 ~~~~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~-------------------~~Ig~~~~I~~sii~g~~~~~~~~~~ 363 (436)
T PLN02241 304 PPSKIEDCRITDSIISHGCFLR-ECKIEHSVVGLR-------------------SRIGEGVEIEDTVMMGADYYETEEEI 363 (436)
T ss_pred CCcEecCCeEEEeEEcCCcEEc-CeEEEeeEEcCC-------------------CEECCCCEEEEeEEECCCcccccccc
Confidence 4455555666779999999999 999999987777 8999999999887744
Q ss_pred ------C---CEECCCeEEccCCCcccccCCCCceEEccC-----eEEecCCcEECCC
Q 018622 307 ------N---VKIGKDVVIVNKDDVQEADRPELGFYIRSG-----ITIIMEKATIEDG 350 (353)
Q Consensus 307 ------~---~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~-----~~vig~~~~i~~g 350 (353)
+ +.||+++.+.+ ..+.++++||.++.|... ..++|++++|++|
T Consensus 364 ~~~~~~~~~~~~Ig~~~~i~~-~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~ 420 (436)
T PLN02241 364 ASLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSG 420 (436)
T ss_pred ccccccCCcceEECCCCEEcc-eEecCCCEECCCcEEecccccCCccccccccEEeCC
Confidence 2 37999988874 447777788877777522 2234555555555
No 180
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.51 E-value=1.2e-06 Score=76.24 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=11.2
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEEc
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 317 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~ 317 (353)
+.||.++.|. ++.||+++.||+++++.
T Consensus 138 v~IG~~~~I~~gv~IG~~~vIgagsvV~ 165 (203)
T PRK09527 138 VWIGSHVVINPGVTIGDNSVIGAGSVVT 165 (203)
T ss_pred cEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 3344443333 34444444444444443
No 181
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.50 E-value=4.7e-07 Score=76.35 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=21.6
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
+.|++++.|. +++||+++.||+++++..+
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d 149 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLKD 149 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECCC
Confidence 6777777776 5778888888888777653
No 182
>PRK10191 putative acyl transferase; Provisional
Probab=98.50 E-value=1.2e-06 Score=72.31 Aligned_cols=29 Identities=28% Similarity=0.522 Sum_probs=19.5
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
+.||+++.+. ++.||+++.||+++++..+
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 6666666665 5777777777777766653
No 183
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.45 E-value=2.7e-06 Score=82.28 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=65.0
Q ss_pred CeEEEEeCCeE-EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC---------CeeEEEeCCCcccccc
Q 018622 41 ENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKA 110 (353)
Q Consensus 41 ~~flV~~gD~i-~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g---------~V~~~~ekp~~~~~~~ 110 (353)
.-++|+.+|.+ ...+ ...+. + .+..++++..+.+.+..++.|+..+|+++ .+.+|..||..++...
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 35899999944 4333 22332 2 23677888888766556889999999988 8999999998765310
Q ss_pred ccccccccCCCccccccCCcccceeeEEecHHHHHHHHH
Q 018622 111 MQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 149 (353)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~ 149 (353)
.......+..+.++|+..|+.+..+.++.
T Consensus 130 ----------~~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 130 ----------SGAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred ----------CCcccCCCcccccccceeccHHHHHHHHH
Confidence 01111234567899999999988876654
No 184
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.45 E-value=2.3e-06 Score=72.66 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=21.9
Q ss_pred ceEECCCcEEC-ceEE---eeeEEcCCcEECCCCEEece
Q 018622 232 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDT 266 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v---~~~~ig~~~~ig~~~~i~~~ 266 (353)
++.||++|.|+ ++.+ .+..||+++.|+++|.|..+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~ 100 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTA 100 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeC
Confidence 34555555555 3333 25688888888888888643
No 185
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.45 E-value=1.9e-06 Score=78.09 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=36.5
Q ss_pred ceEECCCcEECceEEeeeEEc--CCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC---eEEcceEeCC
Q 018622 232 DAIISHGCFLRECTVEHSIVG--ERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN---TKIRNCIIDK 306 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig--~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~---~~i~~~iig~ 306 (353)
++.|+++|.|+. ++.|+ .+++||++|.|++.+.+..+ +++|.. +...+.+||+
T Consensus 141 gidI~~~a~IG~----g~~I~h~~givIG~~a~IGdnv~I~~~------------------VtiGg~~~~~~~~~p~IGd 198 (273)
T PRK11132 141 QVDIHPAAKIGR----GIMLDHATGIVIGETAVIENDVSILQS------------------VTLGGTGKTSGDRHPKIRE 198 (273)
T ss_pred eeEecCcceECC----CeEEcCCCCeEECCCCEECCCCEEcCC------------------cEEecCcccCCCcCCEECC
Confidence 466666666662 23333 34566666666665544443 444421 1122456666
Q ss_pred CCEECCCeEEccCCCcccc
Q 018622 307 NVKIGKDVVIVNKDDVQEA 325 (353)
Q Consensus 307 ~~~Ig~~~~i~~~~~~~~~ 325 (353)
+|.||+++.|.++..+++.
T Consensus 199 ~V~IGaga~Ilggv~IG~~ 217 (273)
T PRK11132 199 GVMIGAGAKILGNIEVGRG 217 (273)
T ss_pred CcEEcCCCEEcCCCEECCC
Confidence 6666666666554333333
No 186
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.45 E-value=1.1e-06 Score=74.62 Aligned_cols=9 Identities=11% Similarity=0.541 Sum_probs=3.5
Q ss_pred eEEcCCcEE
Q 018622 249 SIVGERSRL 257 (353)
Q Consensus 249 ~~ig~~~~i 257 (353)
+.|+++|.|
T Consensus 89 v~Ig~~~~I 97 (169)
T cd03357 89 VLIGPNVQI 97 (169)
T ss_pred CEECCCCEE
Confidence 333333333
No 187
>PRK10191 putative acyl transferase; Provisional
Probab=98.45 E-value=6.1e-07 Score=73.97 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=16.7
Q ss_pred eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEEC
Q 018622 233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 270 (353)
Q Consensus 233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~ 270 (353)
+.||+++.|+++ .+++|++++.||+++.|++.+.++
T Consensus 48 a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG 83 (146)
T PRK10191 48 ATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIG 83 (146)
T ss_pred CEECCCeEECCC--CeEEECCCcEECCCCEECCCCEEC
Confidence 344444544421 234445555555555555444443
No 188
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.44 E-value=1.1e-06 Score=79.43 Aligned_cols=25 Identities=8% Similarity=0.222 Sum_probs=9.9
Q ss_pred eEeCCCeEEcceEeCCCCEECCCeEE
Q 018622 291 IGVGRNTKIRNCIIDKNVKIGKDVVI 316 (353)
Q Consensus 291 ~~ig~~~~i~~~iig~~~~Ig~~~~i 316 (353)
|.||.||.| +..||++|+||+++++
T Consensus 232 ~~IGagA~I-GI~IGd~~VVGAGaVV 256 (319)
T TIGR03535 232 CLLGANSGL-GISLGDDCVVEAGLYV 256 (319)
T ss_pred cEECCCCEE-CeEECCCCEECCCCEE
Confidence 333333333 3334444444444333
No 189
>PRK10502 putative acyl transferase; Provisional
Probab=98.43 E-value=9.7e-07 Score=75.91 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=23.4
Q ss_pred eEECCCcEECceEEeeeEEcCCcEECCCCEEec--eEEECCc
Q 018622 233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKD--TVMLGAD 272 (353)
Q Consensus 233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~--~v~~~~~ 272 (353)
+.|++++.|... .+..||+++.|+++|.|.+ .+.++++
T Consensus 58 ~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~ 97 (182)
T PRK10502 58 VVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAH 97 (182)
T ss_pred cEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCC
Confidence 444444444310 2588999999999998874 3444443
No 190
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.42 E-value=1.3e-06 Score=75.08 Aligned_cols=34 Identities=15% Similarity=0.404 Sum_probs=20.4
Q ss_pred ceEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEec
Q 018622 232 DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKD 265 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~ 265 (353)
++.||+++.|+ ++.+. ...||++|.|+++|.|..
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t 110 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYT 110 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEc
Confidence 45555555555 33332 237777777777777763
No 191
>PLN02357 serine acetyltransferase
Probab=98.41 E-value=2.3e-06 Score=79.88 Aligned_cols=53 Identities=11% Similarity=0.334 Sum_probs=34.0
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622 248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~ 318 (353)
+++||++|.||.+|.|.+.+.++++ +.||.++.|...+-...+.+|.-+.+.+
T Consensus 278 ~piIGd~V~IGagA~IlggV~IGdg------------------a~IGAgSVV~~dVP~~~~v~G~PArvv~ 330 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILGNITIGEG------------------AKIGAGSVVLKDVPPRTTAVGNPARLIG 330 (360)
T ss_pred CceeCCCeEECCceEEECCeEECCC------------------CEECCCCEECcccCCCcEEECCCeEEEc
Confidence 3677777777777777666666654 6777777776655555555565555544
No 192
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.39 E-value=1.9e-06 Score=67.33 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=19.6
Q ss_pred ceEECCCcEECceEEeeeEEcCCcEECCCCEEec
Q 018622 232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKD 265 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~ 265 (353)
++.|+++|+|.. .....||++|.|++++.|..
T Consensus 9 ~~~I~~~~~i~~--~~~i~IG~~~~I~~~~~I~~ 40 (107)
T cd05825 9 NSWIGEGVWIYN--LAPVTIGSDACISQGAYLCT 40 (107)
T ss_pred CCEECCCCEEee--CCceEECCCCEECCCeEeec
Confidence 345555555541 02467888888888887754
No 193
>PLN02694 serine O-acetyltransferase
Probab=98.37 E-value=1.9e-06 Score=78.26 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=5.6
Q ss_pred EEcCCcEECCCCEE
Q 018622 250 IVGERSRLDYGVEL 263 (353)
Q Consensus 250 ~ig~~~~ig~~~~i 263 (353)
+||++|.||.+|.|
T Consensus 214 iIGd~V~IGagA~I 227 (294)
T PLN02694 214 KIGDGVLIGAGATI 227 (294)
T ss_pred EECCCeEECCeeEE
Confidence 34444444444333
No 194
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.37 E-value=3.9e-06 Score=72.09 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=3.6
Q ss_pred ECCCcEEC
Q 018622 235 ISHGCFLR 242 (353)
Q Consensus 235 ig~~~~i~ 242 (353)
+|.++.|+
T Consensus 70 ~g~~i~iG 77 (183)
T PRK10092 70 YGYNIFLG 77 (183)
T ss_pred ecCCcEEc
Confidence 34444444
No 195
>PLN02739 serine acetyltransferase
Probab=98.35 E-value=2.3e-06 Score=79.30 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECC
Q 018622 233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 271 (353)
Q Consensus 233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~ 271 (353)
+.||+++.|.++ ..++||++|.||++|.|..++.+++
T Consensus 212 A~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg 248 (355)
T PLN02739 212 ARIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGG 248 (355)
T ss_pred ccccCceEEecC--CceEECCCCEECCCCEEcCCceeCC
Confidence 344444444411 2456666666666666666665554
No 196
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.30 E-value=3.9e-06 Score=72.79 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=32.4
Q ss_pred CCCCCeEEec-eee---eceEECCCcEECceEEeeeEEcCCcEECCCCEEe--ceEEECCc
Q 018622 218 RFLPPTKIDN-CRI---KDAIISHGCFLRECTVEHSIVGERSRLDYGVELK--DTVMLGAD 272 (353)
Q Consensus 218 ~i~~~~~i~~-~~i---~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~--~~v~~~~~ 272 (353)
.+.+|-++.. ..+ +++.++.+|++.--......||+++.|++++.|. ..+.++++
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~ 91 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD 91 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC
Confidence 3455655542 222 2566777776641011356888888888888887 35666654
No 197
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.27 E-value=3.7e-06 Score=64.95 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=20.0
Q ss_pred eEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622 291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~ 318 (353)
+.|++++.+. ++.|++++.|++++.+..
T Consensus 61 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 61 VVIGAGAKILGNITIGDNVKIGANAVVTK 89 (101)
T ss_pred cEEcCCCEEECcCEECCCCEECCCCEECc
Confidence 6777777776 477777777777777764
No 198
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.26 E-value=1.1e-05 Score=84.43 Aligned_cols=216 Identities=16% Similarity=0.160 Sum_probs=137.0
Q ss_pred eEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC--CCeeEEEeCCCccccccccccccccC
Q 018622 42 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSLLG 119 (353)
Q Consensus 42 ~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~--g~V~~~~ekp~~~~~~~~~~~~~~~~ 119 (353)
.++|+.||++..++-. +.+ -..++++......+.+..++.|++..|.+ +++..|..||..++...+.
T Consensus 154 g~li~~gDv~~~f~~~-~~~---~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~------- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQP-LQD---IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS------- 222 (974)
T ss_pred ceEEEecchhhhcccc-ccC---CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-------
Confidence 7999999988766521 111 23466777666666555688999999887 6899999999876532211
Q ss_pred CCccccccCCcccceeeEEecHHHHHHHHHhhCC------CCCchhhhhhhhhh----------hcCcEEEEEe-cceEe
Q 018622 120 FSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP------TSNDFGSEIIPAAI----------MEHDVQAYIF-RDYWE 182 (353)
Q Consensus 120 ~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~------~~~~~~~d~l~~l~----------~~~~i~~~~~-~g~w~ 182 (353)
+.+..+.++|+|+|+.+..+.++..... ...|+..|++..|- +..++..... .+.++
T Consensus 223 ------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~ 296 (974)
T PRK13412 223 ------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFY 296 (974)
T ss_pred ------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeE
Confidence 2245799999999999988776654211 12344445554432 2245555555 45899
Q ss_pred EcCCHHHHHHHHHhhccC---CCcccccCCCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceE-EeeeEEcCCcEE
Q 018622 183 DIGTIKSFYEANMALTKE---SPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECT-VEHSIVGERSRL 257 (353)
Q Consensus 183 dIgtp~~y~~a~~~ll~~---~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~-v~~~~ig~~~~i 257 (353)
.+||-..|+.....+.+. ++. +++ .++.-.|. +.+.++++++++.++ +.. |++|.|+.+++|
T Consensus 297 H~GTs~E~l~~~~~~q~~~~~~~~--i~~------~~~~~~~~-----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~i 363 (974)
T PRK13412 297 HYGTSRELISSTLAVQNLVTDQRR--IMH------RKVKPHPA-----MFVQNAVLSGKLTAENATLWIENSHVGEGWKL 363 (974)
T ss_pred EecCcHHHhcCchhHHHHhhhhhh--hhc------cccCCCCc-----eEEEeeEecCCcccCCCeEEEEeeEecCCeEE
Confidence 999998888543332221 111 111 11111121 234578888888888 333 688999999999
Q ss_pred CCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeC
Q 018622 258 DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 305 (353)
Q Consensus 258 g~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig 305 (353)
|.+|+|.+....+-. ..|.++..|...=++
T Consensus 364 g~~~Iisgv~~~~~~------------------~~vP~~~ci~~vpl~ 393 (974)
T PRK13412 364 ASRSIITGVPENSWN------------------LDLPEGVCIDVVPVG 393 (974)
T ss_pred cCCcEEecccccccc------------------eecCCCcEEEEEEcC
Confidence 999999888543321 567777777655553
No 199
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.22 E-value=1.9e-05 Score=61.74 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=6.7
Q ss_pred cEECCCCEEeceEEE
Q 018622 255 SRLDYGVELKDTVML 269 (353)
Q Consensus 255 ~~ig~~~~i~~~v~~ 269 (353)
++||++|.|...+.+
T Consensus 24 i~IG~~~~I~~~~~I 38 (107)
T cd05825 24 VTIGSDACISQGAYL 38 (107)
T ss_pred eEECCCCEECCCeEe
Confidence 444444444444433
No 200
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.14 E-value=2.6e-06 Score=77.41 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=66.8
Q ss_pred eceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEE
Q 018622 231 KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 310 (353)
Q Consensus 231 ~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~I 310 (353)
.+.++.+-+.+| .+|.||+++.||++|+|++.|.+.+ |++.+. ..++..+.|..+++|.++.|
T Consensus 263 ~nvlvd~~~~iG----~~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~---~~~~~~s~i~s~ivg~~~~I 325 (371)
T KOG1322|consen 263 GNVLVDSIASIG----ENCSIGPNVVIGPRVRIEDGVRLQD----------STILGA---DYYETHSEISSSIVGWNVPI 325 (371)
T ss_pred ccEeeccccccC----CccEECCCceECCCcEecCceEEEe----------eEEEcc---ceechhHHHHhhhccccccc
Confidence 456666666666 5799999999999999999999987 333333 46677777778999999999
Q ss_pred CCCeEEccCCCcccccCCCCceEEccC
Q 018622 311 GKDVVIVNKDDVQEADRPELGFYIRSG 337 (353)
Q Consensus 311 g~~~~i~~~~~~~~~~~~~~~~~i~~~ 337 (353)
|.++.+.+.+.++++..+.+.-++.++
T Consensus 326 G~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 326 GIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred cCceEEecccEeccceEEecccccccc
Confidence 999999887655555555554454333
No 201
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.14 E-value=1.7e-05 Score=61.88 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=6.1
Q ss_pred ceEECCCcEEC
Q 018622 232 DAIISHGCFLR 242 (353)
Q Consensus 232 ~~~ig~~~~i~ 242 (353)
++.||++|.|+
T Consensus 21 ~v~IG~~~~Ig 31 (109)
T cd04647 21 GITIGDNVLIG 31 (109)
T ss_pred ceEECCCCEEC
Confidence 35555555555
No 202
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.13 E-value=1.4e-05 Score=67.84 Aligned_cols=90 Identities=13% Similarity=0.245 Sum_probs=59.7
Q ss_pred CCceecCCCCCCCeEEec---eee-eceEECCCcEEC-ceEEe---------eeEEcCCcEECCCCEEeceEEECCcccc
Q 018622 210 KTPFYTSPRFLPPTKIDN---CRI-KDAIISHGCFLR-ECTVE---------HSIVGERSRLDYGVELKDTVMLGADYYQ 275 (353)
Q Consensus 210 ~~~i~~~~~i~~~~~i~~---~~i-~~~~ig~~~~i~-~~~v~---------~~~ig~~~~ig~~~~i~~~v~~~~~~~~ 275 (353)
.-.|++.+.|+++..|.. ..| +.+.||++|.|. +.++. +-.||+++.||++|.|=+.+.++++
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~--- 143 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDN--- 143 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCC---
Confidence 455677777777777742 223 246666666666 34442 4489999999999998888888876
Q ss_pred chhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEc
Q 018622 276 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 317 (353)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~ 317 (353)
++||+||.+...+=.+-+.+|--+.+.
T Consensus 144 ---------------akIGA~sVVlkdVP~~~tvvGvPArii 170 (194)
T COG1045 144 ---------------AKIGAGSVVLKDVPPNATVVGVPARVI 170 (194)
T ss_pred ---------------CEECCCceEccCCCCCceEecCcceEe
Confidence 788888888765444444445544443
No 203
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=2.3e-05 Score=68.51 Aligned_cols=142 Identities=11% Similarity=0.126 Sum_probs=84.8
Q ss_pred cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHH-HHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622 19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYM-DFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 97 (353)
Q Consensus 19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~-~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 97 (353)
.+|+.+|..|++++. +.|++++||+++...+- .+++ ......++ ...+......-.....+++|++.
T Consensus 83 tN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l~~----a~~~~li~-d~~~~~~~~~ea~kv~~e~G~i~ 150 (239)
T COG1213 83 TNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERLLE----APGEGLIV-DRRPRYVGVEEATKVKDEGGRIV 150 (239)
T ss_pred CCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHHHh----CcCCcEEE-eccccccccCceeEEEecCCEEe
Confidence 357999999999997 67999999999987753 3333 22222332 22221111112223344778888
Q ss_pred EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEEe
Q 018622 98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIF 177 (353)
Q Consensus 98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~~ 177 (353)
.+..+-.. ..-.++|++.|+++.|....+-.... .. ..+.++.+...+.+-..
T Consensus 151 ~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~~e~-~~---~~~~~~~~~~~~~~~~~ 203 (239)
T COG1213 151 EIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELLVER-SE---YDYREVEKEAGLPFTEV 203 (239)
T ss_pred hhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHHhhh-hh---HHHHHHHHHhCCceEEe
Confidence 77654331 24568999999999886543322111 11 11222333322222222
Q ss_pred -----cceEeEcCCHHHHHHHHHhhcc
Q 018622 178 -----RDYWEDIGTIKSFYEANMALTK 199 (353)
Q Consensus 178 -----~g~w~dIgtp~~y~~a~~~ll~ 199 (353)
...|++|.|||++.+|.+.+..
T Consensus 204 di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 204 DIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred eccccCceeEecCCHHHHHHHHHHHHH
Confidence 3589999999999999987764
No 204
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.07 E-value=6.2e-06 Score=70.84 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=17.7
Q ss_pred eeEEcCCcEECCCCEEeceEEECC
Q 018622 248 HSIVGERSRLDYGVELKDTVMLGA 271 (353)
Q Consensus 248 ~~~ig~~~~ig~~~~i~~~v~~~~ 271 (353)
..+||+-++||.++.|-+.+.+++
T Consensus 168 gvvigeTAvvg~~vSilH~Vtlgg 191 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSILHPVTLGG 191 (269)
T ss_pred ceeecceeEeccceeeecceeecc
Confidence 467777777777777777777765
No 205
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.05 E-value=2.5e-05 Score=64.53 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=13.9
Q ss_pred eeEEcCCcEECCCCEEece
Q 018622 248 HSIVGERSRLDYGVELKDT 266 (353)
Q Consensus 248 ~~~ig~~~~ig~~~~i~~~ 266 (353)
.+.||++|.|++++.|...
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 5777777777777777655
No 206
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.96 E-value=2.6e-05 Score=67.35 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=20.5
Q ss_pred ceEECCCcEEC-ceEE---eeeEEcCCcEECCCCEEece
Q 018622 232 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDT 266 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v---~~~~ig~~~~ig~~~~i~~~ 266 (353)
...+|.+|.++ ++.+ .+..||+++.+++++.|...
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~ 105 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN 105 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC
Confidence 45666666666 3332 24556666666666666654
No 207
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.88 E-value=2.1e-05 Score=62.68 Aligned_cols=36 Identities=11% Similarity=0.272 Sum_probs=23.2
Q ss_pred ceEECCCcEEC-ceEEe-------------eeEEcCCcEECCCCEEeceE
Q 018622 232 DAIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKDTV 267 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~-------------~~~ig~~~~ig~~~~i~~~v 267 (353)
++.+|..|++. .+.|+ +..||++++|+++|++...-
T Consensus 54 nVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAq 103 (184)
T KOG3121|consen 54 NVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQ 103 (184)
T ss_pred cceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhh
Confidence 46666666666 44442 56778888887777765443
No 208
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.81 E-value=2.6e-05 Score=62.68 Aligned_cols=108 Identities=13% Similarity=0.325 Sum_probs=70.0
Q ss_pred cCCCCCCCeEEe-ceeee-ceEECCCcEECc-eEE----eeeEEcCCcEECCCCEEece-------------EEEC-Ccc
Q 018622 215 TSPRFLPPTKID-NCRIK-DAIISHGCFLRE-CTV----EHSIVGERSRLDYGVELKDT-------------VMLG-ADY 273 (353)
Q Consensus 215 ~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~-~~v----~~~~ig~~~~ig~~~~i~~~-------------v~~~-~~~ 273 (353)
.++.|.|.+.+. ++.++ +++|+++|+|.. +++ ..-+||+++.|++.+.|.+. .+++ .+.
T Consensus 7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~Nv 86 (190)
T KOG4042|consen 7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNV 86 (190)
T ss_pred ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccce
Confidence 456777888875 47775 689999999984 443 35799999999999988872 2222 222
Q ss_pred ccchhH-HHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccc
Q 018622 274 YQTESE-IASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEA 325 (353)
Q Consensus 274 ~~~~~~-~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~ 325 (353)
+.-.+- ....+|++ .+|+..+++. ++.+.++|.||+.|.+-....+++.
T Consensus 87 FeVgc~s~A~kvGd~---NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpen 137 (190)
T KOG4042|consen 87 FEVGCKSSAKKVGDR---NVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPEN 137 (190)
T ss_pred EEeechhhhhhhcCc---ceEeeeeEecCCcEEcCCceeccceEEecccccCCc
Confidence 222221 13455666 5677777776 6777777777777777665444433
No 209
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.73 E-value=8.6e-05 Score=76.61 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=18.6
Q ss_pred ceEECCCcEECceEE---eeeEEcCCcEECCCCEEece
Q 018622 232 DAIISHGCFLRECTV---EHSIVGERSRLDYGVELKDT 266 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v---~~~~ig~~~~ig~~~~i~~~ 266 (353)
++.||+||.|....+ ....||++|.|+++|.+.+.
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~ 149 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGY 149 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcc
Confidence 345555555552111 23456666666666666543
No 210
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.72 E-value=0.00012 Score=75.69 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=22.4
Q ss_pred ceEECCCcEECceEE---eeeEEcCCcEECCCCEEec
Q 018622 232 DAIISHGCFLRECTV---EHSIVGERSRLDYGVELKD 265 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v---~~~~ig~~~~ig~~~~i~~ 265 (353)
++.||++|.|+...+ .-+.||++|.|+++|.|+.
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~ 633 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQT 633 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEe
Confidence 456666666663211 1268888888888888875
No 211
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=97.68 E-value=0.00045 Score=60.99 Aligned_cols=140 Identities=17% Similarity=0.159 Sum_probs=88.4
Q ss_pred cccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC-C
Q 018622 19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG-R 95 (353)
Q Consensus 19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g-~ 95 (353)
.|+.++++.+..++++. ....+.|+++.||. +...++.++++.+.+.++++++.+.+..+ ...++.+.. ++| .
T Consensus 78 ~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~ 153 (223)
T cd02513 78 ASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHR--FPWRALGLD-DNGLE 153 (223)
T ss_pred CCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCc--CcHHheeec-cCCce
Confidence 47899999999888620 01136899999999 55678999999998888887777766543 233333332 222 2
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY 175 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~ 175 (353)
+..+.++... ..+. .| .....++|+|+++++.|.... . .+ ..++..|
T Consensus 154 ~~~~~~~~~~-~~q~----------~~-----~~~~~n~~~y~~~~~~~~~~~--------~----~~-----g~~~~~~ 200 (223)
T cd02513 154 PVNYPEDKRT-RRQD----------LP-----PAYHENGAIYIAKREALLESN--------S----FF-----GGKTGPY 200 (223)
T ss_pred eccCcccccC-CcCC----------Ch-----hHeeECCEEEEEEHHHHHhcC--------C----cc-----CCCeEEE
Confidence 2222221110 0000 00 135678899999999875310 1 01 4577777
Q ss_pred Eecc-eEeEcCCHHHHHHHHH
Q 018622 176 IFRD-YWEDIGTIKSFYEANM 195 (353)
Q Consensus 176 ~~~g-~w~dIgtp~~y~~a~~ 195 (353)
.++. .-+||.+++|+..|..
T Consensus 201 ~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 201 EMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred EeCccceeCCCCHHHHHHHHH
Confidence 7765 5899999999988764
No 212
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=97.32 E-value=0.0018 Score=57.01 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeE
Q 018622 21 TADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 98 (353)
Q Consensus 21 T~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~ 98 (353)
..++++.+...++ +.+.++++.||. +....+.++++.+++.+ +++++.+.. .++..+|++|.+..
T Consensus 77 ~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~------~~v~~~~~~g~~~~ 143 (217)
T TIGR00453 77 RQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKAG--AAILALPVA------DTLKRVEADGFIVE 143 (217)
T ss_pred HHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--cEEEeEecc------ceEEEEcCCCceee
Confidence 3578888887762 137899999998 44566889998876543 444444432 34555666677877
Q ss_pred EEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhh-cCcEEEEEe
Q 018622 99 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIM-EHDVQAYIF 177 (353)
Q Consensus 99 ~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~-~~~i~~~~~ 177 (353)
+.|+.. ...+++ .|+|++..|..++......... ..|....+.+ ..++..+..
T Consensus 144 ~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~~~-~~d~~~~~~~~g~~i~~~~~ 197 (217)
T TIGR00453 144 TVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEEGFE-ITDDASAVEKLGGKVALVEG 197 (217)
T ss_pred cCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhcCCC-CCcHHHHHHHcCCCeEEEec
Confidence 766421 134455 6999999998776543222222 2333333332 357777777
Q ss_pred cceEeEcCCHHHHHHHHH
Q 018622 178 RDYWEDIGTIKSFYEANM 195 (353)
Q Consensus 178 ~g~w~dIgtp~~y~~a~~ 195 (353)
+..+++|++|+||..|..
T Consensus 198 ~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 198 DALNFKITTPEDLALAEA 215 (217)
T ss_pred CccccccCCHHHHHHHHH
Confidence 777789999999988765
No 213
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.31 E-value=0.0019 Score=56.06 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=34.2
Q ss_pred EEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622 245 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 245 ~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~ 319 (353)
.|...++..+++|+.||.+.++++..++ .+||++++|. .-++..+-.||+++.|.++
T Consensus 47 ~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~gdLdig~dV~Iegg 104 (277)
T COG4801 47 RIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVIGDLDIGADVIIEGG 104 (277)
T ss_pred EEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEecccccccceEEecC
Confidence 3334555566666666666666666665 5666666666 3445555666666666554
No 214
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.30 E-value=0.00019 Score=57.80 Aligned_cols=90 Identities=8% Similarity=0.150 Sum_probs=48.3
Q ss_pred CceecCCCCCCCeEEec-eee----eceEECCCcEEC-ceEEee--------------eEEcCCcEECCCCEEeceEEEC
Q 018622 211 TPFYTSPRFLPPTKIDN-CRI----KDAIISHGCFLR-ECTVEH--------------SIVGERSRLDYGVELKDTVMLG 270 (353)
Q Consensus 211 ~~i~~~~~i~~~~~i~~-~~i----~~~~ig~~~~i~-~~~v~~--------------~~ig~~~~ig~~~~i~~~v~~~ 270 (353)
+.+.+.+.+.+++.+++ +.+ ..-+||+||.|+ .+.|.| -+||...+..-+|..+..-+.+
T Consensus 21 s~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd 100 (190)
T KOG4042|consen 21 SDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGD 100 (190)
T ss_pred cccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcC
Confidence 34445555555555554 333 256777777777 344432 2555555555555544444444
Q ss_pred CccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCC
Q 018622 271 ADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKD 313 (353)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~ 313 (353)
+++++.+ +++|+|+.+. +|++|..|+|-..
T Consensus 101 ~NViesk-------------ayvg~gv~vssgC~vGA~c~v~~~ 131 (190)
T KOG4042|consen 101 RNVIESK-------------AYVGDGVSVSSGCSVGAKCTVFSH 131 (190)
T ss_pred cceEeee-------------eEecCCcEEcCCceeccceEEecc
Confidence 4433333 5666666665 6666666665443
No 215
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.29 E-value=0.0018 Score=56.27 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=58.5
Q ss_pred ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEE
Q 018622 232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 310 (353)
Q Consensus 232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~I 310 (353)
+++||+++.+. ..++++...+|+++.|.+.++..+ ++|+..|.+. |.+++.++.|
T Consensus 22 dViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayi 77 (277)
T COG4801 22 DVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYI 77 (277)
T ss_pred cEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEE
Confidence 56777776654 569999999999999999999866 8999999887 7788888888
Q ss_pred CCCeEEccCCCcccccCCCCceEE
Q 018622 311 GKDVVIVNKDDVQEADRPELGFYI 334 (353)
Q Consensus 311 g~~~~i~~~~~~~~~~~~~~~~~i 334 (353)
|+++.|.+.-....+=.+|..+.|
T Consensus 78 GE~~sI~gkl~v~gdLdig~dV~I 101 (277)
T COG4801 78 GEFSSIKGKLTVIGDLDIGADVII 101 (277)
T ss_pred eccceeeeeEEEecccccccceEE
Confidence 888887765333333333433444
No 216
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=97.28 E-value=0.0052 Score=55.12 Aligned_cols=143 Identities=10% Similarity=0.147 Sum_probs=85.3
Q ss_pred CCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEEEeCCCC---CCcceEEEECCCCCeeEEEeCCCcccccccccc
Q 018622 40 IENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAAVGESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVD 114 (353)
Q Consensus 40 ~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~~~~~~~---~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~ 114 (353)
.+.++++.||.- ....+.++++.+.+.+.+++.+..+..+.. ..+...+..|.+|+.+.|...+-......+
T Consensus 88 ~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~--- 164 (238)
T TIGR00466 88 DERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF--- 164 (238)
T ss_pred CCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc---
Confidence 356889999993 345688899887666667777777754311 122334455778888777654321100000
Q ss_pred ccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCch-hhhhhhhhhhcCcEEEEEecce-EeEcCCHHHH
Q 018622 115 TSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF-GSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF 190 (353)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~-~~d~l~~l~~~~~i~~~~~~g~-w~dIgtp~~y 190 (353)
.....|. ....+...|+|.|++++|..+........... .-+.|+.+-...+|.+...+.. -..++||+|+
T Consensus 165 --~~~~tpq---~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 165 --AKRQTPV---GDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred --ccccccc---ccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 0000111 01246689999999999987765322111111 1135665556688999888765 4599999986
No 217
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.20 E-value=0.00032 Score=42.97 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=4.4
Q ss_pred eEeCCCCEECCCe
Q 018622 302 CIIDKNVKIGKDV 314 (353)
Q Consensus 302 ~iig~~~~Ig~~~ 314 (353)
+.||+++.|++++
T Consensus 20 ~~Ig~~~~I~~~~ 32 (36)
T PF00132_consen 20 VVIGDNCVIGPGV 32 (36)
T ss_dssp EEE-TTEEEETTE
T ss_pred CEECCCCEEcCCC
Confidence 3333333333333
No 218
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=96.98 E-value=0.0018 Score=53.44 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=15.0
Q ss_pred eEEcCCcEECC-CCEEec-eEEECCc
Q 018622 249 SIVGERSRLDY-GVELKD-TVMLGAD 272 (353)
Q Consensus 249 ~~ig~~~~ig~-~~~i~~-~v~~~~~ 272 (353)
..||+++.|+. .+.+.. .+.++++
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG~~ 27 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIGKF 27 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEECCC
Confidence 46788888887 455553 4555554
No 219
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.96 E-value=0.00091 Score=40.92 Aligned_cols=10 Identities=10% Similarity=0.375 Sum_probs=4.4
Q ss_pred eEECCCcEEC
Q 018622 233 AIISHGCFLR 242 (353)
Q Consensus 233 ~~ig~~~~i~ 242 (353)
+.|+++|.|+
T Consensus 2 ~~Ig~~~~i~ 11 (36)
T PF00132_consen 2 VVIGDNVIIG 11 (36)
T ss_dssp EEEETTEEEE
T ss_pred CEEcCCCEEC
Confidence 3444444444
No 220
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0022 Score=55.54 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=16.1
Q ss_pred CCCCceEEccCeE-----EecCCcEECCCccC
Q 018622 327 RPELGFYIRSGIT-----IIMEKATIEDGMVI 353 (353)
Q Consensus 327 ~~~~~~~i~~~~~-----vig~~~~i~~g~vv 353 (353)
+||+++.|+.|++ .||+|++|++|++|
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIaAGsvV 233 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVV 233 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEeccceE
Confidence 3444444444433 36888888888875
No 221
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=96.91 E-value=0.007 Score=53.71 Aligned_cols=140 Identities=16% Similarity=0.066 Sum_probs=86.0
Q ss_pred ccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622 20 GTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 97 (353)
Q Consensus 20 GT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 97 (353)
+.+++++.+...+.+ .+.++++.||. +....++++++.+.+.+ ..++..+..+ .+..+ +++|.+.
T Consensus 81 ~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~----~~~~v--~~~g~~~ 147 (227)
T PRK00155 81 ERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVKD----TIKRS--DDGGGIV 147 (227)
T ss_pred hHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEeccc----cEEEE--cCCCcee
Confidence 358899999887742 36789999997 34567899999876654 3344444332 13333 4556665
Q ss_pred EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhh-cCcEEEEE
Q 018622 98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIM-EHDVQAYI 176 (353)
Q Consensus 98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~-~~~i~~~~ 176 (353)
++.++.. .....+ .|+|+.+.|..+++...... .+..|....+.+ ..++..+.
T Consensus 148 ~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~-~~~~d~~~~~~~~~~~i~~~~ 201 (227)
T PRK00155 148 DTPDRSG------------------------LWAAQT-PQGFRIELLREALARALAEG-KTITDDASAVERLGKPVRLVE 201 (227)
T ss_pred ecCChHH------------------------heeeeC-CccchHHHHHHHHHHHHhcC-CCcCcHHHHHHHcCCCeEEEe
Confidence 5432110 122333 89999999987776432211 122333332222 24677777
Q ss_pred ecceEeEcCCHHHHHHHHHhhc
Q 018622 177 FRDYWEDIGTIKSFYEANMALT 198 (353)
Q Consensus 177 ~~g~w~dIgtp~~y~~a~~~ll 198 (353)
.+..+++|+||+||..|...+.
T Consensus 202 ~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 202 GRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred cCcccccCCCHHHHHHHHHHHH
Confidence 6767889999999999876554
No 222
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=96.79 E-value=0.007 Score=53.18 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=87.0
Q ss_pred ccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622 20 GTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 97 (353)
Q Consensus 20 GT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~ 97 (353)
+.+++++.+...+++ ...+.++++.||. +....++++++.+.+.++ .+...+... ++...|++|.+.
T Consensus 79 ~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~~------~~~~~~~~g~~~ 147 (218)
T cd02516 79 TRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVTD------TIKRVDDDGVVV 147 (218)
T ss_pred HHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc------cEEEecCCCcee
Confidence 347889999888741 1246789999997 345668999998865543 333333322 223456778888
Q ss_pred EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEEEEE
Q 018622 98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQAYI 176 (353)
Q Consensus 98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~~~~ 176 (353)
.+.|... ...+.++ ++|+.+.|..++...... .-+.+|...-+.+. .++..+.
T Consensus 148 ~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~-~~~~td~~~~~~~~~~~v~~v~ 201 (218)
T cd02516 148 ETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEE-GEEFTDDASLVEAAGGKVALVE 201 (218)
T ss_pred ecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhc-CCCcCcHHHHHHHcCCCeEEEe
Confidence 8876422 2467778 999999998887654322 22234443333332 4677766
Q ss_pred ecceEeEcCCHHHHHH
Q 018622 177 FRDYWEDIGTIKSFYE 192 (353)
Q Consensus 177 ~~g~w~dIgtp~~y~~ 192 (353)
-+..-+||.||++|..
T Consensus 202 ~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 202 GSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcccccCCCHHHHhh
Confidence 6556679999999953
No 223
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=96.76 E-value=0.038 Score=49.00 Aligned_cols=141 Identities=12% Similarity=0.166 Sum_probs=90.9
Q ss_pred ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
..|+.++++++...+++ ..+.+.++++.+|.-+ ..++.++++.+.+.+++..+.+.+... ...+. ...+++|+
T Consensus 75 ~~~~~~si~~~l~~l~~--~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~--~~~~~-~~~~~~g~ 149 (222)
T TIGR03584 75 FTGTAPVVKHAIEELKL--QKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF--PIQRA-FKLKENGG 149 (222)
T ss_pred CCCchHHHHHHHHHHhh--cCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC--ChHHh-eEECCCCc
Confidence 45788999999988752 1124679999999944 467999999988877887777766432 12222 24445676
Q ss_pred eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622 96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY 175 (353)
Q Consensus 96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~ 175 (353)
+..+.........+.++ .....+.++|+++++.|.. . ..+ + .+++..|
T Consensus 150 ~~~~~~~~~~~~rQd~~---------------~~y~~nga~y~~~~~~~~~---~-----~~~----~-----~~~~~~~ 197 (222)
T TIGR03584 150 VEMFFPEHFNTRSQDLE---------------EAYHDAGQFYWGKSQAWLE---S-----GPI----F-----SPHSIPI 197 (222)
T ss_pred EEecCCCcccCCCCCCc---------------hheeeCCeEEEEEHHHHHh---c-----CCc----c-----CCCcEEE
Confidence 65554221111111110 1246799999999998742 1 011 1 3577888
Q ss_pred Eecc-eEeEcCCHHHHHHHHH
Q 018622 176 IFRD-YWEDIGTIKSFYEANM 195 (353)
Q Consensus 176 ~~~g-~w~dIgtp~~y~~a~~ 195 (353)
.++. .-+||.+++|+..|..
T Consensus 198 ~m~~~~~iDID~~~D~~~ae~ 218 (222)
T TIGR03584 198 VLPRHLVQDIDTLEDWERAEL 218 (222)
T ss_pred EeCccceeCCCCHHHHHHHHH
Confidence 8765 5899999999998865
No 224
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.70 E-value=0.0021 Score=38.92 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=11.1
Q ss_pred EECCCcEEC-ceEEeeeEEcCCcEECCCCEE
Q 018622 234 IISHGCFLR-ECTVEHSIVGERSRLDYGVEL 263 (353)
Q Consensus 234 ~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i 263 (353)
.||++|.|+ ++.+ ...||++|.|+++++|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 455555555 2222 2444555555554444
No 225
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=96.64 E-value=0.0056 Score=52.67 Aligned_cols=19 Identities=32% Similarity=0.414 Sum_probs=10.9
Q ss_pred ceEeCCCCEECCCeEEccC
Q 018622 301 NCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 301 ~~iig~~~~Ig~~~~i~~~ 319 (353)
.++||++|.||+++++..+
T Consensus 124 ~v~IG~~vwIG~~a~IlpG 142 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPG 142 (190)
T ss_pred CeEECCCeEEcCccEECCC
Confidence 3556666666666655544
No 226
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.20 E-value=0.077 Score=46.40 Aligned_cols=165 Identities=12% Similarity=0.158 Sum_probs=101.5
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHHHCCCcEEEEEEEeCCC-C--CCcceEEEEC
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGES-R--ASDYGLVKID 91 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~~~~a~~tll~~~~~~~-~--~~~~g~v~~d 91 (353)
-+.||= .+..+...+.. .+++-++=+-||.-+ ...+.++++..+..+++|.=+..+..++ + ..+-..+..|
T Consensus 73 h~SGTd-R~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d 148 (247)
T COG1212 73 HQSGTD-RLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLD 148 (247)
T ss_pred CCCccH-HHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEc
Confidence 344554 45555555542 234556667899843 3457888887777777665555554332 1 1234456688
Q ss_pred CCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchh-hhhhhhhhhcC
Q 018622 92 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG-SEIIPAAIMEH 170 (353)
Q Consensus 92 ~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~-~d~l~~l~~~~ 170 (353)
.+|+-+.|.-.|-...... .- + ...+--.|+|.|++.+|+++...........+ .+-|+-|-...
T Consensus 149 ~~g~ALYFSRs~iP~~rd~-~~--------~-----~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~ 214 (247)
T COG1212 149 KEGYALYFSRAPIPYGRDN-FG--------G-----TPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGE 214 (247)
T ss_pred CCCcEEEEEcCCCCCcccc-cC--------C-----cchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCC
Confidence 8899999976654221100 00 0 13567889999999999988765422111111 12344444558
Q ss_pred cEEEEEecceE-eEcCCHHHHHHHHHhhcc
Q 018622 171 DVQAYIFRDYW-EDIGTIKSFYEANMALTK 199 (353)
Q Consensus 171 ~i~~~~~~g~w-~dIgtp~~y~~a~~~ll~ 199 (353)
+|.+...+..- ..++||+|+.++.+.+.+
T Consensus 215 kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 215 KIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred eeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 99998888655 899999999998876653
No 227
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=96.19 E-value=0.063 Score=51.49 Aligned_cols=129 Identities=13% Similarity=0.067 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeE
Q 018622 21 TADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 98 (353)
Q Consensus 21 T~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~ 98 (353)
..+++++++..++ ++.+++..||. +....++++++..++. ++++...++.+ +..|+...+|. ..+..
T Consensus 83 r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~D--tik~~~~tldR-~~l~~ 151 (378)
T PRK09382 83 RQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVAD--TLKRANETVDR-EGLKL 151 (378)
T ss_pred HHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEecc--CcEEeeeEcCc-ccEEE
Confidence 5678999998875 26788888885 3344578888766543 56777778766 66777656654 34543
Q ss_pred EEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEEEEEe
Q 018622 99 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQAYIF 177 (353)
Q Consensus 99 ~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~~~~~ 177 (353)
+ ++|+... .+.+....+ ...+ .+|..+.+.+. .+|..+.-
T Consensus 152 ~-QTPQ~f~---------------------------------~~~l~~a~~----~~~~-~TDd~sl~~~~G~~V~~v~g 192 (378)
T PRK09382 152 I-QTPQLSR---------------------------------TKTLKAAAD----GRGD-FTDDSSAAEAAGGKVALVEG 192 (378)
T ss_pred E-ECCCCCC---------------------------------HHHHHHHHh----CCCC-cccHHHHHHHcCCcEEEEEC
Confidence 3 6776431 111221211 1122 34555554433 57888888
Q ss_pred cceEeEcCCHHHHHHHHHhhcc
Q 018622 178 RDYWEDIGTIKSFYEANMALTK 199 (353)
Q Consensus 178 ~g~w~dIgtp~~y~~a~~~ll~ 199 (353)
+..|++|++|+|+..|+..+..
T Consensus 193 ~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 193 SEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCcccCCCCHHHHHHHHHHhcc
Confidence 8999999999999999876653
No 228
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=94.95 E-value=0.23 Score=44.11 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEeCCeE-E-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeEE
Q 018622 22 ADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 99 (353)
Q Consensus 22 ~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~ 99 (353)
.++++.+...+++ .+.++++.||.- . ...+.++++.+.+.++. +.+.+..+ .+... .+|.+...
T Consensus 85 ~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d------ti~~~-~~~~~~~~ 150 (230)
T PRK13385 85 QESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD------TVKRV-KDKQVIET 150 (230)
T ss_pred HHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEeccc------eEEEE-cCCeeEec
Confidence 3888888887752 355788899993 3 34578999888766543 33333221 12222 23544333
Q ss_pred EeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhh-hcCcEEEEEec
Q 018622 100 AEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFR 178 (353)
Q Consensus 100 ~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~-~~~~i~~~~~~ 178 (353)
.++. . .+..-+.|.|+.+.|..+.+....... +.+|....+. ...+|..++-+
T Consensus 151 i~r~---~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~~~-~~td~~~~~~~~g~~v~~v~~~ 204 (230)
T PRK13385 151 VDRN---E----------------------LWQGQTPQAFELKILQKAHRLASEQQF-LGTDEASLVERSPHPVKLVQGS 204 (230)
T ss_pred cCHH---H----------------------HhhhcCCceeeHHHHHHHHHHHHhcCC-CcCcHHHHHHHcCCCEEEEECC
Confidence 2211 0 122234788999888776653221222 2344333332 23677778777
Q ss_pred ceEeEcCCHHHHHHHHHhhc
Q 018622 179 DYWEDIGTIKSFYEANMALT 198 (353)
Q Consensus 179 g~w~dIgtp~~y~~a~~~ll 198 (353)
...+.|.+|+|+..|...+.
T Consensus 205 ~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 205 YYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred cccCcCCCHHHHHHHHHHHh
Confidence 78899999999999976654
No 229
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=94.24 E-value=0.35 Score=41.14 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=35.7
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEE
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADIT 71 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~t 71 (353)
+..|++++++.+..+.. ..+.|+++.||.. ....++++++.+...+..++
T Consensus 72 ~~~g~~~si~~~l~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 123 (188)
T TIGR03310 72 YAEGQSSSIKLGLELPV-----QSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV 123 (188)
T ss_pred hhcCHHHHHHHHhcCCC-----CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE
Confidence 44689999998886222 2478999999983 34568889888766555443
No 230
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=93.93 E-value=4.9 Score=39.64 Aligned_cols=251 Identities=11% Similarity=0.106 Sum_probs=127.7
Q ss_pred cccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCeEEe-cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622 17 WFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYR-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM 93 (353)
Q Consensus 17 ~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~i~~-~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~ 93 (353)
.+-|.|+-...... .+++.....-+++.|.+.|++.. .| -.++.+|.++++++++=+.+-..+ ..+-|.+.. .+
T Consensus 188 ~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vD-p~~lg~~~~~~~e~~~ev~~Kt~~-d~kgG~l~~-~d 264 (469)
T PLN02474 188 YPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVD-LKILNHLIQNKNEYCMEVTPKTLA-DVKGGTLIS-YE 264 (469)
T ss_pred eeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccC-HHHHHHHHhcCCceEEEEeecCCC-CCCccEEEE-EC
Confidence 36677765443221 22222234568999999999754 44 467888889999888755443221 123354442 34
Q ss_pred C--CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC--------CC------Cc
Q 018622 94 G--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--------TS------ND 157 (353)
Q Consensus 94 g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~--------~~------~~ 157 (353)
| +++.+.|-|...... .. .. ....+.|++.+.|+-++|+++++.... .. ..
T Consensus 265 gk~~lvEysqvp~e~~~~-f~----------~~--~kf~~fNtnn~w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q 331 (469)
T PLN02474 265 GKVQLLEIAQVPDEHVNE-FK----------SI--EKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQ 331 (469)
T ss_pred CEEEEEEEecCCHHHHHh-hc----------cc--ccceeeeeeeEEEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEE
Confidence 5 466666655432110 00 00 124678999999999999887653210 00 00
Q ss_pred h---hhhhhhhhhhcCcEEEEEec-ceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec--eeee
Q 018622 158 F---GSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN--CRIK 231 (353)
Q Consensus 158 ~---~~d~l~~l~~~~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~--~~i~ 231 (353)
| .-++++.+ .+..++... ..+.-+.+..+++.+..++..-....-...+.....+ .|...++. ..+.
T Consensus 332 ~Et~ig~ai~~f---~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~~l~~~~~~~~~~----~p~IeL~~~f~~v~ 404 (469)
T PLN02474 332 LETAAGAAIRFF---DNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGFVIRNKARTNPS----NPSIELGPEFKKVA 404 (469)
T ss_pred eHHHHHHHHHhC---CCceEEEEchhhccCCCCCCCHHHHHHHHHHhccCeEEecCcccCCC----CCcEEECcccccHH
Confidence 0 01122111 233333332 2477788877888777776643211100001100111 11112221 1111
Q ss_pred c--eEE-CCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCC
Q 018622 232 D--AII-SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN 307 (353)
Q Consensus 232 ~--~~i-g~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~ 307 (353)
+ ..+ +--..++ ..+-.|.-++..|.++++.+.|++... ...+..|.+|+.+.+.++..+
T Consensus 405 ~f~~rf~~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~~--------------~~~~~~ip~g~~l~~~~~~~~ 466 (469)
T PLN02474 405 NFLSRFKSIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITAK--------------SGVKLEIPDGAVLENKDINGP 466 (469)
T ss_pred hHHHhcCCCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEcC--------------CCCeeecCCCcEecceeeccc
Confidence 0 000 1111111 123344555888888888888888753 111267888999988887654
No 231
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=92.17 E-value=0.27 Score=40.67 Aligned_cols=54 Identities=17% Similarity=0.038 Sum_probs=42.2
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEE
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCA 75 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~ 75 (353)
+..|++++|+.+...+. ..+.|++++||.. ....+.++++.+.+++++++++..
T Consensus 68 ~~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 68 PGQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp SSCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 35789999999998873 2489999999994 345689999998877877766544
No 232
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=91.99 E-value=0.32 Score=47.36 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=16.6
Q ss_pred ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceE
Q 018622 232 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTV 267 (353)
Q Consensus 232 ~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v 267 (353)
++++..++.++ ++.|.+|.|+.++.||++|.|.+.-
T Consensus 284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~ 320 (414)
T PF07959_consen 284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVD 320 (414)
T ss_pred EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCc
Confidence 34444444444 3344444555555555554444443
No 233
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=90.99 E-value=2.7 Score=35.97 Aligned_cols=40 Identities=13% Similarity=-0.074 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-EEe-cCHHHHHHHHH
Q 018622 19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHV 64 (353)
Q Consensus 19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i~~-~dl~~~~~~h~ 64 (353)
.|+.++++.+....+ .+.++++.||. +.+ ..+..+++.+.
T Consensus 74 ~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 74 PGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred CCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 678899998887543 47899999999 334 45777877653
No 234
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=85.93 E-value=8.7 Score=33.18 Aligned_cols=42 Identities=21% Similarity=-0.028 Sum_probs=31.9
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHH
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHV 64 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~ 64 (353)
+..|..++++.+...++ .+.++|+.||.-+ ...+..+++.+.
T Consensus 76 ~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 76 PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 34689999999998775 3789999999943 445677877653
No 235
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.66 E-value=1.7 Score=36.59 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=36.3
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCc
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDAD 69 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~ 69 (353)
+..|++++++.+..++.. ..+.++++.||+ +....++.+++.+.+.+++
T Consensus 72 ~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 72 WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 446899999999988751 247899999998 3456688888877654443
No 236
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=84.37 E-value=9.1 Score=33.47 Aligned_cols=138 Identities=18% Similarity=0.183 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeEE
Q 018622 22 ADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 99 (353)
Q Consensus 22 ~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~ 99 (353)
-+++.++.+.++. ..+..+++.+-. +...+++++++.+..++++..+.+.+.+. ..|-.... .+|.+..+
T Consensus 83 ~~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~---~p~k~f~~-~~~~~~~~ 154 (228)
T COG1083 83 IDAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEH---HPYKAFSL-NNGEVKPV 154 (228)
T ss_pred HHHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeeccc---chHHHHHh-cCCceeec
Confidence 3566777776653 234466666554 56788999999999998888877777653 11211122 34788888
Q ss_pred EeCCCccc-cccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEEec
Q 018622 100 AEKPSGAN-LKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR 178 (353)
Q Consensus 100 ~ekp~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~~~ 178 (353)
.|.|.... .+.++ ..+..+..+|+++.+.|.. +. .-| ......|.++
T Consensus 155 ~~~~~~~~rrQ~Lp---------------k~Y~~NgaiYi~~~~~l~e---~~----~~f----------~~~~~~y~m~ 202 (228)
T COG1083 155 NEDPDFETRRQDLP---------------KAYRENGAIYINKKDALLE---ND----CFF----------IPNTILYEMP 202 (228)
T ss_pred ccCCccccccccch---------------hhhhhcCcEEEehHHHHhh---cC----cee----------cCCceEEEcC
Confidence 88774321 11111 1346688899999998852 10 111 1244456554
Q ss_pred -ceEeEcCCHHHHHHHHHhhcc
Q 018622 179 -DYWEDIGTIKSFYEANMALTK 199 (353)
Q Consensus 179 -g~w~dIgtp~~y~~a~~~ll~ 199 (353)
....||.+..++..|+..+..
T Consensus 203 ~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 203 EDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred cccccccccHHhHHHHHHHhhh
Confidence 357799999999998876553
No 237
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=79.32 E-value=23 Score=30.71 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=38.1
Q ss_pred CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHC
Q 018622 14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR 66 (353)
Q Consensus 14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~ 66 (353)
+++|..|-+.+|+.+...... ..+.++++.||. +...++..+++.+...
T Consensus 75 npd~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 75 NPDYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred CcchhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 346778999999999988862 124799999999 4567889998887655
No 238
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=74.70 E-value=5.7 Score=33.58 Aligned_cols=46 Identities=13% Similarity=-0.046 Sum_probs=33.9
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-EEec-CHHHHHHHHHHCCC
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDA 68 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i~~~-dl~~~~~~h~~~~a 68 (353)
...|++++|+.+...++ .+.++++.||. +.+. .++++++.+.+.++
T Consensus 71 ~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 118 (186)
T TIGR02665 71 DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDA 118 (186)
T ss_pred CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCC
Confidence 45799999999998775 37899999998 4444 46777776544343
No 239
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=74.56 E-value=5.8 Score=33.35 Aligned_cols=41 Identities=10% Similarity=-0.082 Sum_probs=31.9
Q ss_pred cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHH
Q 018622 17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSH 63 (353)
Q Consensus 17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h 63 (353)
+..|+.++|+.+...++ .+.++++.||+- ....++.+++.+
T Consensus 67 ~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 67 PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 45689999999998775 378999999993 344577787765
No 240
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=73.89 E-value=5.6 Score=33.99 Aligned_cols=52 Identities=8% Similarity=-0.051 Sum_probs=36.3
Q ss_pred cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEE
Q 018622 19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCA 75 (353)
Q Consensus 19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~ 75 (353)
.|...++..+...+. .+++|++++||+. ....+..+++.+...+.....++.
T Consensus 73 ~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 73 KGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred CCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 456677887776543 2478999999984 466789999988776655544443
No 241
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=71.63 E-value=7.2 Score=41.95 Aligned_cols=53 Identities=9% Similarity=0.136 Sum_probs=29.9
Q ss_pred EEeeeEEcCCcEECCCCE-EeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceE-eCCCCEECCCeEE
Q 018622 245 TVEHSIVGERSRLDYGVE-LKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCI-IDKNVKIGKDVVI 316 (353)
Q Consensus 245 ~v~~~~ig~~~~ig~~~~-i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~i-ig~~~~Ig~~~~i 316 (353)
.|.||++..++.++++.. |++|.+-++ .+||++++|.++- ...+.+|.+++.+
T Consensus 333 ~v~ns~~~~~~s~~~~s~~vE~s~l~~~-------------------~~ig~~~Iisgv~~~~~~~~vP~~~ci 387 (974)
T PRK13412 333 FVQNAVLSGKLTAENATLWIENSHVGEG-------------------WKLASRSIITGVPENSWNLDLPEGVCI 387 (974)
T ss_pred EEEeeEecCCcccCCCeEEEEeeEecCC-------------------eEEcCCcEEecccccccceecCCCcEE
Confidence 345666666666666633 555555555 5666666666553 3334555555544
No 242
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=69.16 E-value=52 Score=30.54 Aligned_cols=119 Identities=12% Similarity=0.104 Sum_probs=69.4
Q ss_pred cccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCeEEe-cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEE-CC
Q 018622 17 WFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYR-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DN 92 (353)
Q Consensus 17 ~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~i~~-~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~-d~ 92 (353)
.+-|.|+-...... .+++.....-+++.+.+.|++.. .| -.++-+|.++++++++=+.+-..+ ..+-|++.. |.
T Consensus 112 ~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~D-p~~lg~~~~~~~~~~~evv~Kt~~-dek~G~l~~~~g 189 (300)
T cd00897 112 YPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVD-LRILNHMVDNKAEYIMEVTDKTRA-DVKGGTLIQYEG 189 (300)
T ss_pred ccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCC-HHHHHHHHhcCCceEEEEeecCCC-CCcccEEEEECC
Confidence 36677765443221 23222234568999999999764 34 467888999999988744332221 234555543 33
Q ss_pred CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHh
Q 018622 93 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 150 (353)
Q Consensus 93 ~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~ 150 (353)
.=+|+.+.|-|...... ..-. ....+.|++.+.|+-++|+++++.
T Consensus 190 ~~~vvEyse~p~e~~~~-~~~~------------~~~~~~nt~n~~~~l~~L~~~~~~ 234 (300)
T cd00897 190 KLRLLEIAQVPKEHVDE-FKSI------------KKFKIFNTNNLWVNLKAVKRVVEE 234 (300)
T ss_pred EEEEEEeccCCHHHHHh-hcCc------------ccceEEEEeEEEEEHHHHHHHHHh
Confidence 22466666655432110 0000 023578999999999999877653
No 243
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=66.16 E-value=12 Score=31.72 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=33.5
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHHHC
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDR 66 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~~~ 66 (353)
++..|.+++++.+...+.+ ...+.++++.||.-+ ...+..+++....+
T Consensus 75 ~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~ 124 (190)
T TIGR03202 75 DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRR 124 (190)
T ss_pred ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhC
Confidence 4456889999999987641 134789999999943 34467777765433
No 244
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=65.37 E-value=60 Score=29.25 Aligned_cols=137 Identities=12% Similarity=0.007 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHhhhhccCCCCeEEEEeCCe---EEe-cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCe
Q 018622 21 TADAVRQFTWVFEDAKNRNIENVAILCGDH---LYR-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 96 (353)
Q Consensus 21 T~~al~~a~~~i~~~~~~~~~~flV~~gD~---i~~-~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V 96 (353)
..+.++++...+.. +..+|+.+|. +.. ..+.++++...+.++ .++..+..+ .+..+++++.|
T Consensus 103 r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~ga--~i~~~~~~d------tik~v~~~~~v 168 (252)
T PLN02728 103 RQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHGA--AVLGVPVKA------TIKEANSDSFV 168 (252)
T ss_pred hHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--EEEeecchh------hEEEecCCCce
Confidence 35678888877752 3456777773 333 346888887776664 455554433 12233444544
Q ss_pred eEEEeCCCccccccccccccccCCCccccccCCccccee-eEEecHHHHHHHHHhhCCCCCchhhhhhhhhhh-cCcEEE
Q 018622 97 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG-VYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIM-EHDVQA 174 (353)
Q Consensus 97 ~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-iyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~-~~~i~~ 174 (353)
... ++-. .++.+. =..|+.+.|....++...+... .+|-...+.. ..+|..
T Consensus 169 ~~t---~~R~-----------------------~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~-~TDd~~~~~~~g~~V~~ 221 (252)
T PLN02728 169 VKT---LDRK-----------------------RLWEMQTPQVIKPELLRRGFELVEREGLE-VTDDVSIVEALKHPVFI 221 (252)
T ss_pred eec---cChH-----------------------HeEEEeCCccchHHHHHHHHHHHHhcCCC-cCcHHHHHHHcCCceEE
Confidence 332 2111 111111 1346666665555543222112 2333322222 245666
Q ss_pred EEecceEeEcCCHHHHHHHHHhhc
Q 018622 175 YIFRDYWEDIGTIKSFYEANMALT 198 (353)
Q Consensus 175 ~~~~g~w~dIgtp~~y~~a~~~ll 198 (353)
.+=+..-+-|.+|+|+..|...+.
T Consensus 222 v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 222 TEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred EecCcccccCCCHHHHHHHHHHHh
Confidence 555556778999999998886554
No 245
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=64.72 E-value=69 Score=30.07 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=68.1
Q ss_pred ccccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCeE-E-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEE-
Q 018622 16 NWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI- 90 (353)
Q Consensus 16 ~~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~i-~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~- 90 (353)
..+-|.|+-...... .+++.....-+++.+.+.|++ . ..| -.++-++.++++++.+-+.+...+ ..+-|++..
T Consensus 131 ~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~D-p~~lG~~~~~~~~~~~kvv~k~~~-~ekvG~l~~~ 208 (323)
T cd04193 131 MAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVAD-PVFIGFCISKGADVGAKVVRKRYP-TEKVGVVVLV 208 (323)
T ss_pred cCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccccccC-HHHhHHHHHcCCceEEEEEECCCC-CCceeEEEEE
Confidence 347788876554332 333322346689999999995 4 344 467788888999988865543321 234555543
Q ss_pred CCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHH
Q 018622 91 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 149 (353)
Q Consensus 91 d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~ 149 (353)
|..-+++.+.|-|....... ..+ +.+ ..+.-|..+.+|+-++|+++++
T Consensus 209 ~g~~~vvEysel~~~~~~~~-~~~--------g~l--~f~~~ni~~~~fsl~fl~~~~~ 256 (323)
T cd04193 209 DGKPQVVEYSEISDELAEKR-DAD--------GEL--QYNAGNIANHFFSLDFLEKAAE 256 (323)
T ss_pred CCeEEEEEeecCCHHHHhcc-CcC--------CcE--ecccchHhhheeCHHHHHHHHh
Confidence 33334555555443321100 000 000 1234456678899999987764
No 246
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=61.10 E-value=19 Score=30.89 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=33.6
Q ss_pred eEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEEec--ceEeEcCCHHHHHHHHHhh
Q 018622 136 VYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMAL 197 (353)
Q Consensus 136 iyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~~~--g~w~dIgtp~~y~~a~~~l 197 (353)
..+|+++.+..+.+....... -+..++++..+..+.++ +.|.||+||++|.++.+.+
T Consensus 133 ~al~~~~~~~~l~~~l~~~~~-----~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~ 191 (196)
T PRK00560 133 ISLWHQSLLNALIYALKTQNY-----RLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQIL 191 (196)
T ss_pred EEEEcHHHHHHHHHHHHhCCc-----cHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHH
Confidence 367888888765432211111 23334444444444443 4688999999998876554
No 247
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=60.50 E-value=26 Score=26.48 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=12.0
Q ss_pred CcEECCCCEEeceEEECC
Q 018622 254 RSRLDYGVELKDTVMLGA 271 (353)
Q Consensus 254 ~~~ig~~~~i~~~v~~~~ 271 (353)
...|+.++.++..+..+.
T Consensus 36 ~v~i~~~~~v~G~i~~~~ 53 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADD 53 (101)
T ss_pred EEEEcCCCEEEEEEEEeE
Confidence 566777777777766554
No 248
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=57.53 E-value=1.9e+02 Score=28.14 Aligned_cols=58 Identities=10% Similarity=0.179 Sum_probs=33.2
Q ss_pred ccccHHHHHHHH--HHhhhhccCCCCeEEEEeCCeEE-ecCHHHHHHHHHHCCCcEEEEEEE
Q 018622 18 FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAA 76 (353)
Q Consensus 18 ~lGT~~al~~a~--~~i~~~~~~~~~~flV~~gD~i~-~~dl~~~~~~h~~~~a~~tll~~~ 76 (353)
+-|+|+-..... ..++..-....|+.+|.|.|.+. ..|| .++++....+.+-.|=+++
T Consensus 214 PPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL-~ILn~~i~~~~ey~MEvTd 274 (498)
T KOG2638|consen 214 PPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL-NILNHVINNNIEYLMEVTD 274 (498)
T ss_pred CCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-HHHHHHhcCCCceEEEecc
Confidence 668875432211 12221112356899999999985 5675 4455555566666664443
No 249
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=55.76 E-value=47 Score=27.29 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=16.7
Q ss_pred eEEeeeEEcCC-cEECCCCEEeceEEECC
Q 018622 244 CTVEHSIVGER-SRLDYGVELKDTVMLGA 271 (353)
Q Consensus 244 ~~v~~~~ig~~-~~ig~~~~i~~~v~~~~ 271 (353)
+.+...+..++ +.|++..+|+..+..+.
T Consensus 46 G~~~G~v~s~~~iiv~~~g~V~gei~a~~ 74 (146)
T COG1664 46 GTFEGDVHSDGGIVVGESGRVEGEIEAEH 74 (146)
T ss_pred EEEEEEEEeCCCEEECCccEEEEEEEeCE
Confidence 34544555555 66677777776665554
No 250
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=54.25 E-value=74 Score=25.13 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=38.6
Q ss_pred ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecC-HHHHHHHHHHCCCcEEEEEEE
Q 018622 18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISCAA 76 (353)
Q Consensus 18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~d-l~~~~~~h~~~~a~~tll~~~ 76 (353)
..|-+.++..+..... .+.++++..|.+...+ +..+++.+.+.+.++.+....
T Consensus 63 n~g~~~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 63 NLGFSAARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp CSHHHHHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred cccccccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 3477888888887776 3789999999999887 788999888877765554443
No 251
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=53.64 E-value=94 Score=27.16 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=21.2
Q ss_pred CCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEE
Q 018622 40 IENVAILCGDHL--YRMDYMDFIQSHVDRDADIT 71 (353)
Q Consensus 40 ~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~t 71 (353)
.+.++++.||.- ....++++++.++..+.+++
T Consensus 88 ~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 88 ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 367888888883 33457788887765555443
No 252
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=53.36 E-value=83 Score=23.63 Aligned_cols=28 Identities=7% Similarity=0.160 Sum_probs=17.1
Q ss_pred eEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622 291 IGVGRNTKIRNCIIDKNVKIGKDVVIVN 318 (353)
Q Consensus 291 ~~ig~~~~i~~~iig~~~~Ig~~~~i~~ 318 (353)
..|...+.+.+.+-.+...|..++.+.+
T Consensus 70 v~i~~~~~v~G~i~~~~l~v~~ga~i~G 97 (101)
T PF04519_consen 70 VEIYGTARVEGDITAGKLEVEGGASING 97 (101)
T ss_pred EEEeCCEEEEEEEEECEEEEeCCCEEEE
Confidence 4566666666666555666666665543
No 253
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=53.34 E-value=1.2 Score=40.51 Aligned_cols=127 Identities=10% Similarity=0.077 Sum_probs=60.9
Q ss_pred ccccccHHHHHHHH--HHhhhhccCCCCeEEEEeCCeE-Eec-CHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEEC
Q 018622 16 NWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHL-YRM-DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID 91 (353)
Q Consensus 16 ~~~lGT~~al~~a~--~~i~~~~~~~~~~flV~~gD~i-~~~-dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d 91 (353)
..+-|.|+-+.... ..++......-+++.|.+.|++ ... |. .++-.+..+++++.+-+.+-+.. ...-|++...
T Consensus 109 ~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP-~~lG~~~~~~~~~~~kvv~K~~~-d~k~G~~~~~ 186 (266)
T cd04180 109 LFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP-LFIGIAIQNRKAINQKVVPKTRN-EESGGYRIAN 186 (266)
T ss_pred eccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH-HHHHHHHHcCCCEEEEEEECCCC-CCeEEEEEEe
Confidence 34667776654322 1333222345677888888884 344 44 35566677777777655443321 1334554432
Q ss_pred CCCC--eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHH
Q 018622 92 NMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 149 (353)
Q Consensus 92 ~~g~--V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~ 149 (353)
++|+ ++.+.|-|........ +..-.. .... ......|+..++|+-+++++.++
T Consensus 187 ~~g~~~~vEyse~~~~~~~~~~--~~~~~~-~~~~--~~~~~~n~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 187 INGRVQLLEYDQIKKLLKQKMV--NNQIPK-DIDD--APFFLFNTNNLINFLVEFKDRVD 241 (266)
T ss_pred cCCCEEEEEeccCCHHHHhccc--cccCcC-CCCc--eeeccceEEEEEEEHHHHHHHHH
Confidence 2254 4444443322111000 000000 0000 12356788888888888876553
No 254
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=52.47 E-value=1.5e+02 Score=28.20 Aligned_cols=42 Identities=7% Similarity=-0.050 Sum_probs=30.0
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE-Ee-cCHHHHHHHH
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSH 63 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~~-~dl~~~~~~h 63 (353)
.+..|...+|+.+..... ++.++++.||+- .+ ..+..+++.+
T Consensus 227 ~~~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 227 GESVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCCCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 345689999999987654 257899999994 33 3466777654
No 255
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=48.94 E-value=82 Score=30.79 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=81.4
Q ss_pred ccccHHHHHHHH--HHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622 18 FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 95 (353)
Q Consensus 18 ~lGT~~al~~a~--~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~ 95 (353)
|-|.|+-..... ..+++....+-+++.|.+.|++...-=-.++.++.++++++.+-+.+-..+ ..+-|++.. .+|+
T Consensus 168 P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~lG~~~~~~~~~~~evv~Kt~~-dek~Gvl~~-~~G~ 245 (420)
T PF01704_consen 168 PPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVFLGYMIEKNADFGMEVVPKTSP-DEKGGVLCR-YDGK 245 (420)
T ss_dssp E-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHHHHHHHHTT-SEEEEEEE-CST-TTSSEEEEE-ETTE
T ss_pred CCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHHHHHHHhccchhheeeeecCCC-CCceeEEEE-eCCc
Confidence 557776443322 133322234668999999999764433468888899999988766554321 234565554 2454
Q ss_pred e--eEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--------C----------
Q 018622 96 I--AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--------S---------- 155 (353)
Q Consensus 96 V--~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--------~---------- 155 (353)
+ +.+.+-|.... ...... ....+.|++--.|+-+.|+++++..... .
T Consensus 246 ~~vvEysqip~~~~-~~~~~~------------~~~~~FntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~ 312 (420)
T PF01704_consen 246 LQVVEYSQIPKEHM-AEFKDI------------KGFLLFNTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKV 312 (420)
T ss_dssp EEEEEGGGS-HHGH-HHHTST------------TTSBEEEEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEE
T ss_pred cEEEEeccCCHHHH-Hhhhcc------------ccceEEEeceeeEEHHHHHHHHHhccccCccEEcchhcccccCCccE
Confidence 3 33333332210 000000 0134668888899999998877643210 0
Q ss_pred Cchhhhhhhhhhhc-CcEEEEEe-cceEeEcCCHHHHHHHHHhhcc
Q 018622 156 NDFGSEIIPAAIME-HDVQAYIF-RDYWEDIGTIKSFYEANMALTK 199 (353)
Q Consensus 156 ~~~~~d~l~~l~~~-~~i~~~~~-~g~w~dIgtp~~y~~a~~~ll~ 199 (353)
..|++.+.. .+.. .+..++.+ ...+.-+-+-.+++....++..
T Consensus 313 ~q~Et~i~~-~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd~y~ 357 (420)
T PF01704_consen 313 IQFETAIGF-AIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSDLYD 357 (420)
T ss_dssp EEEECGGGG-GGGGCTSEEEEEE-GGG--B-SSHHHHHHHHSTTEE
T ss_pred Eeehhhhhc-hHhhccCcEEEEEcHHHcCCccccCcceeeccceec
Confidence 001111111 1111 12333333 2567889999999888876654
No 256
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=48.08 E-value=1.4e+02 Score=29.46 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=69.6
Q ss_pred cccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCeEE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEE-ECC
Q 018622 17 WFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDN 92 (353)
Q Consensus 17 ~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~-~d~ 92 (353)
.|-|+|+-...... .+++..+..-+.+.|.+.|++. .+|+ .++.++...+.+.++=+..-..+ ..+-|++. .|+
T Consensus 215 ~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~-~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g 292 (472)
T COG4284 215 YPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL-KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDG 292 (472)
T ss_pred CCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH-HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCC
Confidence 36677754332221 2332223466889999999965 4564 66788888899888755442221 34567665 676
Q ss_pred CCCeeEEEeCCCccccccccccccccCCCccccccCCcccc-eeeEEecHHHHHHH
Q 018622 93 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MGVYVFKKDVLFKL 147 (353)
Q Consensus 93 ~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Giyi~~~~vl~~~ 147 (353)
.-|++.+.|-|........ +-+.. .....| .++|+++.+++.+.
T Consensus 293 ~~rllEysev~~~~~~~~~---------s~~~~--~~~n~Nni~l~~~~~~~l~~~ 337 (472)
T COG4284 293 KLRLLEYSEVPNEHREEFT---------SDGKL--KYFNTNNIWLHLFSVKFLKEA 337 (472)
T ss_pred ceEEEEEecCChhHhhhhc---------cccce--eeeccccceeehhHHHHHHhh
Confidence 6788888887764211000 00000 123445 78999998888653
No 257
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=47.93 E-value=1.8e+02 Score=27.78 Aligned_cols=38 Identities=5% Similarity=0.032 Sum_probs=24.8
Q ss_pred cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE-ec-CHHHHHHH
Q 018622 19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQS 62 (353)
Q Consensus 19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~-~~-dl~~~~~~ 62 (353)
.|-..++..+..... .+.++++.||+-+ +. .+..+++.
T Consensus 244 ~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 244 IGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 466677877765443 3679999999943 33 35666653
No 258
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=47.37 E-value=58 Score=25.05 Aligned_cols=42 Identities=21% Similarity=0.107 Sum_probs=30.9
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHH-HHHHHH
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYM-DFIQSH 63 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~-~~~~~h 63 (353)
....|.++++..+....+ .+.++++.+|.++..++- .++..+
T Consensus 60 ~~~~g~~~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 60 EENQGLAAARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred cCCCChHHHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHH
Confidence 345678999988887775 378999999999988754 443443
No 259
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=46.15 E-value=1.6e+02 Score=25.59 Aligned_cols=137 Identities=12% Similarity=0.146 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEE-EEEEEeCCCCCCcceEEEECCCCCeeEE
Q 018622 21 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADIT-ISCAAVGESRASDYGLVKIDNMGRIAQF 99 (353)
Q Consensus 21 T~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~t-ll~~~~~~~~~~~~g~v~~d~~g~V~~~ 99 (353)
..-.|..|+++++ +..++.+|++..-++ +.++-.... ....+... ...| .+..+.+|+|+++
T Consensus 82 n~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~~--tnEw-~l~~~~~~ki~~v 144 (231)
T COG4750 82 NIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSGK--TNEW-LLIYNSDGKITRV 144 (231)
T ss_pred hHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecCC--Ccee-EEEEcCCCcEEEE
Confidence 3567888888886 467778888665442 111111111 11111111 2233 4556678899887
Q ss_pred EeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHH---HHHhhC--CCCCc-hhhhhhhhhhhcCcEE
Q 018622 100 AEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK---LLRWRY--PTSND-FGSEIIPAAIMEHDVQ 173 (353)
Q Consensus 100 ~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~---~l~~~~--~~~~~-~~~d~l~~l~~~~~i~ 173 (353)
.=.-. +.++-+|+..|+.+.-+. +++..- ...+. +..++.-.-++...++
T Consensus 145 ~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m~ 200 (231)
T COG4750 145 DIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDMY 200 (231)
T ss_pred EecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhHh
Confidence 63322 357788999998765433 343321 11111 2223443444555666
Q ss_pred EEEec-ceEeEcCCHHHHHHHHHhhc
Q 018622 174 AYIFR-DYWEDIGTIKSFYEANMALT 198 (353)
Q Consensus 174 ~~~~~-g~w~dIgtp~~y~~a~~~ll 198 (353)
.-..+ +-...+.+.++|.+....++
T Consensus 201 iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 201 IEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred HHhhcCCceEEeccHHHHHhhhhhhc
Confidence 55554 45678889999887665544
No 260
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=42.00 E-value=1.7e+02 Score=29.36 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=69.7
Q ss_pred ccccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCeE-EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEE-C
Q 018622 16 NWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-D 91 (353)
Q Consensus 16 ~~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~i-~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~-d 91 (353)
..|-|.|+-...... .+++....+-+++.+.+.|++ ...---.++-++..++.++.+-+.+...+ ...-|++.. +
T Consensus 236 ~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~ 314 (493)
T PLN02435 236 KAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRG 314 (493)
T ss_pred cCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEec
Confidence 346688866543322 344333356689999999995 43333567788888999888755443221 234566653 3
Q ss_pred CCCC--eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHH
Q 018622 92 NMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 149 (353)
Q Consensus 92 ~~g~--V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~ 149 (353)
.+|+ |+.+.|-+......+-+ ++ +. ...+..+.+.++|+-++|+++.+
T Consensus 315 ~~g~~~vvEYsEl~~~~~~~~~~-~~-------g~--L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 315 KGGPLTVVEYSELDQAMASAINQ-QT-------GR--LRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred CCCCEEEEEeccCCHHHHhccCc-cc-------cc--cccchhhHHHhhccHHHHHHHHH
Confidence 4554 55555544221100000 00 00 12356788899999999987653
No 261
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=34.31 E-value=2.1e+02 Score=23.50 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=20.6
Q ss_pred eEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622 291 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 291 ~~ig~~~~i~~~iig~~~~Ig~~~~i~~~ 319 (353)
+.|...+.+.+-+-+....|..++.+.+.
T Consensus 91 Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~ 119 (146)
T COG1664 91 VELYPGGRVIGDITTKEITVEEGAIFEGD 119 (146)
T ss_pred EEEcCCcEEeeeecccEEEEccCCEEEeE
Confidence 67777777777666677777777777654
No 262
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=31.24 E-value=61 Score=30.93 Aligned_cols=45 Identities=13% Similarity=-0.014 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE-Ee-cCHHHHHHHHHHCCCc
Q 018622 19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDAD 69 (353)
Q Consensus 19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~~-~dl~~~~~~h~~~~a~ 69 (353)
.|..++|+.+...++ .+.++++.||.- .. ..+.++++.+...+++
T Consensus 78 ~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 78 QGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred CChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 478888999887765 367999999973 33 3467777765555544
No 263
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=29.69 E-value=1.2e+02 Score=25.64 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=37.2
Q ss_pred ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecC-HHHHHHHHHHCCCcEEEEE
Q 018622 18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 74 (353)
Q Consensus 18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~d-l~~~~~~h~~~~a~~tll~ 74 (353)
..|-++|+..+..... .+.++++.+|...+.+ +.++++...+.+.++.+..
T Consensus 67 n~G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 67 NRGKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CCCcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 4588999988887665 3788999999987765 6777776555666555543
No 264
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=29.56 E-value=5.8e+02 Score=25.48 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=68.0
Q ss_pred cccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCeE-EecCHHHHHHHHHHCCC-cEEEEEEEeCCCCCCcceEEEE-C
Q 018622 17 WFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDA-DITISCAAVGESRASDYGLVKI-D 91 (353)
Q Consensus 17 ~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~i-~~~dl~~~~~~h~~~~a-~~tll~~~~~~~~~~~~g~v~~-d 91 (353)
.|-|.|+-...... .+++.....-+++.+.+.|++ ...---.++-++.++++ ++.-.+.+..+ ...-|++.. |
T Consensus 226 ~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~ 303 (482)
T PTZ00339 226 APGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKD 303 (482)
T ss_pred CCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeC
Confidence 46688866544321 233332346689999999997 43333466777777777 65543333332 244566653 3
Q ss_pred CCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHH
Q 018622 92 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 149 (353)
Q Consensus 92 ~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~ 149 (353)
..-.|+.+.|-+......+ .-.+ +. ......|...++|+-++|+++.+
T Consensus 304 g~~~vvEYsEi~~~~~~~~-~~~~-------g~--l~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 304 YEWQVVEYTEINERILNND-ELLT-------GE--LAFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred CcccEEEEeccChhhhhcc-cccC-------Ce--ecccccceEEEEEEHHHHHHHhh
Confidence 3335777777543321100 0000 00 01356788999999999987653
No 265
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=26.51 E-value=1.1e+02 Score=29.73 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=30.0
Q ss_pred eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEE
Q 018622 248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 310 (353)
Q Consensus 248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~I 310 (353)
+=.|.-++..|.++.+++.|++-.+ ...+..|.+|+.+.+++|-.+..|
T Consensus 447 hLtVsGdV~FGknV~LkGtViIia~--------------~~~~i~IP~gsVLEn~~v~gn~~i 495 (498)
T KOG2638|consen 447 HLTVSGDVWFGKNVSLKGTVIIIAN--------------EGDRIDIPDGSVLENKIVSGNLRI 495 (498)
T ss_pred eEEEeccEEeccceEEeeEEEEEec--------------CCCeeecCCCCeeecceEeccccc
Confidence 3344555888888888888776431 111145667777777766655544
No 266
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=26.45 E-value=1.5e+02 Score=24.16 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecC-HHHHHHHHHHCCCcEEEEE
Q 018622 18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 74 (353)
Q Consensus 18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~d-l~~~~~~h~~~~a~~tll~ 74 (353)
..|-+.|+..+..... .+.++++.+|.....+ +.++++...+++.++.+..
T Consensus 64 n~G~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 64 NFGKGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred CCCccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 3577888888877665 3788999999877665 6778876566666555443
No 267
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=24.97 E-value=1.3e+02 Score=26.30 Aligned_cols=49 Identities=20% Similarity=0.094 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecC-HHHHHHHHHHCCCcEEEE
Q 018622 19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 73 (353)
Q Consensus 19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~d-l~~~~~~h~~~~a~~tll 73 (353)
.|-+.|+..+..... .+.++++.+|...+.+ +.++++...+.++++...
T Consensus 79 ~G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 467778877766544 4788999999987665 678887766667766543
No 268
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=22.72 E-value=82 Score=26.67 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHH
Q 018622 20 GTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHV 64 (353)
Q Consensus 20 GT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~ 64 (353)
|.+.+++.+..++.. +.+.++++.||+- ...+++++++...
T Consensus 75 G~~~si~~al~~~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 75 GLNNALNAALAEARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CHHHHHHHHHHHhhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 889999999887752 2257999999994 4456788887653
No 269
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=22.68 E-value=2.6e+02 Score=23.62 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=35.3
Q ss_pred ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecC-HHHHHHHHHHCCCcEEE
Q 018622 16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 72 (353)
Q Consensus 16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~d-l~~~~~~h~~~~a~~tl 72 (353)
+...|-+.|+..+..... .+.++++.+|...+.+ +..+++.....+.++..
T Consensus 61 ~~n~G~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 61 PGKRGLGSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred CCCCChHHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 344577888887776665 3788899999877665 67777765555655543
No 270
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=22.05 E-value=2.1e+02 Score=24.28 Aligned_cols=66 Identities=8% Similarity=0.030 Sum_probs=0.0
Q ss_pred cceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhh----------hhcCcEEEEEecceEeEcCCHHHHHHHHHhh
Q 018622 132 ASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAA----------IMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 197 (353)
Q Consensus 132 ~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l----------~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~l 197 (353)
+.+-++++++..++.+.+......-.+..-...-. .+..........+...+++||+|+..|++.+
T Consensus 92 vsaDLp~l~~~~i~~vi~~~~~~~~p~~~~~~~G~v~~Glni~~~~~~~~~~~i~~~~la~NVNT~eDl~~a~~ll 167 (177)
T COG2266 92 VSADLPFLNPSIIDSVIDAAASVEVPIVTVVKAGRVPVGLNIVGGKQEEEILEIDNPELAVNVNTPEDLKKAERLL 167 (177)
T ss_pred EecccccCCHHHHHHHHHHHhhccCceeEeeccCccceeeEeecCCCcceeEEeeccceeEecCCHHHHHHHHHHH
No 271
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=21.75 E-value=1.6e+02 Score=23.23 Aligned_cols=31 Identities=16% Similarity=0.474 Sum_probs=21.7
Q ss_pred CeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEE
Q 018622 41 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 75 (353)
Q Consensus 41 ~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~ 75 (353)
+.+++++|| -||..+++.-+++|..+.++..
T Consensus 97 d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 97 DTIVLVSGD----SDFAPLVRKLRERGKRVIVVGA 127 (146)
T ss_dssp SEEEEE-------GGGHHHHHHHHHH--EEEEEE-
T ss_pred CEEEEEECc----HHHHHHHHHHHHcCCEEEEEEe
Confidence 889999999 7899999998888987777774
No 272
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=21.28 E-value=87 Score=31.15 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=40.0
Q ss_pred EEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622 245 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 319 (353)
Q Consensus 245 ~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~ 319 (353)
.|.+|.+...-.+.++..+..+-.-+. +.-|+++.+++|-..+-.+||.+|.+.+-
T Consensus 212 Qi~Hsqveeqqilaa~n~l~~c~~dG~-------------------v~~gpgsvlqhcH~e~piHigaGciv~gL 267 (948)
T KOG4644|consen 212 QIDHSQVEEQQILAADNKLSGCEFDGE-------------------VAGGPGSVLQHCHFEEPIHIGAGCIVLGL 267 (948)
T ss_pred cccchhhhhheeeecCCceeeeEeccc-------------------ccCCCccccccccccCcceeeeeeEEecc
Confidence 444566666666677777776665554 56788888888888888888888877663
No 273
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=20.55 E-value=2.1e+02 Score=24.84 Aligned_cols=50 Identities=12% Similarity=-0.006 Sum_probs=35.5
Q ss_pred cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecC-HHHHHHHHHHCCCcEEEEE
Q 018622 19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 74 (353)
Q Consensus 19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~d-l~~~~~~h~~~~a~~tll~ 74 (353)
.|-+.|+..+....+ .+.++.+.+|.....+ +.++++.+.+.+.++.++.
T Consensus 70 ~G~~~a~n~g~~~a~------gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 70 RTKPKACNYALAFAR------GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred CchHHHHHHHHHhcC------CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 467888888776554 3788999999988776 5788887765445555443
No 274
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=20.19 E-value=3.2e+02 Score=21.76 Aligned_cols=34 Identities=12% Similarity=0.394 Sum_probs=27.7
Q ss_pred CCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEE
Q 018622 39 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 76 (353)
Q Consensus 39 ~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~ 76 (353)
.-+.+++++||- ||..+++.-++.|..+.++..+
T Consensus 99 ~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 99 RIDTIVLVSGDS----DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CCCEEEEEECCc----cHHHHHHHHHHcCCEEEEEccC
Confidence 347899999997 9999999988888877776654
Done!