BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018623
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PNZ|A Chain A, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
pdb|3PNZ|B Chain B, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
pdb|3PNZ|C Chain C, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
pdb|3PNZ|D Chain D, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
pdb|3PNZ|E Chain E, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
pdb|3PNZ|F Chain F, Crystal Structure Of The Lactonase Lmo2620 From Listeria
Monocytogenes
Length = 330
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 24/101 (23%)
Query: 197 SARMAALDFIVCD--ESDVFVTNNNGNMARILAGRRRYFGHKPTIRPNAKKLYKLFVDRN 254
SAR+AA+ ++V + E + V+ G+ AR +++GH P + AKK F+D
Sbjct: 249 SARIAAILYLVSEGFEDQILVS---GDTAR--KTYYKHYGHGPGLEYIAKKWVPRFID-- 301
Query: 255 NMTWEEFASKVRTNQIGFMGEPNEVKPGRGEFHENPAACIC 295
N+ GF GE K + F +NPA C
Sbjct: 302 -----------EANEKGFDGE----KLVKKFFVDNPARCFT 327
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 163 GGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNM 222
G E P+KA H+ ++A+K + AR + F V DE ++ T NG
Sbjct: 14 GSAEPPGPVKA--EPAHTAASVAAKN----LALLKARSFDVTFDVGDEYEIIETIGNGAY 67
Query: 223 ARILAGRRRYFGHKPTIR--PNA 243
+ + RRR G + I+ PNA
Sbjct: 68 GVVSSARRRLTGQQVAIKKIPNA 90
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 163 GGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNM 222
G E P+KA H+ ++A+K + AR + F V DE ++ T NG
Sbjct: 15 GSAEPPGPVKA--EPAHTAASVAAKN----LALLKARSFDVTFDVGDEYEIIETIGNGAY 68
Query: 223 ARILAGRRRYFGHKPTIR--PNA 243
+ + RRR G + I+ PNA
Sbjct: 69 GVVSSARRRLTGQQVAIKKIPNA 91
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 182 ETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNN 218
E + + +LE SSFS + +D I C+E V VTN
Sbjct: 80 ELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNT 116
>pdb|1DLM|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Calcoaceticus Native Data
pdb|1DLM|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Calcoaceticus Native Data
pdb|1DLQ|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 Inhibited By Bound Mercury
pdb|1DLQ|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 Inhibited By Bound Mercury
pdb|1DLT|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 With Bound Catechol
pdb|1DLT|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 With Bound Catechol
pdb|1DMH|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 With Bound 4-Methylcatechol
pdb|1DMH|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 With Bound 4-Methylcatechol
Length = 311
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 210 ESDVFVTNNNGNMARILAGRRRYFGH---KPTIRPNAKKLYKLFVDRNNMTWEEFASKVR 266
E +F T + + R+ +G + G+ K I LYK D N + E +A
Sbjct: 2 EVKIFNTQDVQDFLRVASGLEQEGGNPRVKQIIHRVLSDLYKAIEDLNITSDEYWAGVAY 61
Query: 267 TNQIGFMGEPNEVKPGRGEFH 287
NQ+G E + PG G H
Sbjct: 62 LNQLGANQEAGLLSPGLGFDH 82
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 145 ALGFGSD---VHLYIASGEVYGGR---------ETLAPLKALFPNLHSKETLASKYELEP 192
A+G+ +D +H + G +GG ET L N +++ +A+KY+++P
Sbjct: 173 AVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDP 232
Query: 193 FSSFSARM 200
+ FSA++
Sbjct: 233 DACFSAKV 240
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 145 ALGFGSD---VHLYIASGEVYGGR---------ETLAPLKALFPNLHSKETLASKYELEP 192
A+G+ +D +H + G +GG ET L N +++ +A+KY+++P
Sbjct: 170 AVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDP 229
Query: 193 FSSFSARM 200
+ FSA++
Sbjct: 230 DACFSAKV 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,304,880
Number of Sequences: 62578
Number of extensions: 478974
Number of successful extensions: 756
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 9
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)