BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018623
         (353 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/316 (36%), Positives = 177/316 (56%), Gaps = 10/316 (3%)

Query: 1   MRVPRKCSPKFYESHVLPILNKKHAIQLTKFDYRLANKLDT-DLQKLRCRVNYHALKFTD 59
           +R PR    ++Y +  L  + +  AI LT F +RLA ++D  + Q+LRCRVNYHAL+F  
Sbjct: 178 IRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKP 237

Query: 60  PIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLH 119
            I  + + +V+++R    HF+++HLRFE DMLAF+GC+     EE+ +L   RK   +  
Sbjct: 238 HIMKLSESIVDKLR-SQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADK 296

Query: 120 ASNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLH 179
               ++ R  G+CPLTPEEVGL+LRA+ F +   +Y+A+GE++GG + + P + LFP L 
Sbjct: 297 RLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLD 356

Query: 180 SKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNG--NMARILAGRRRYFGHKP 237
           +  ++    EL   +S     +A+D++VC  SD+F+   +G  N A  L G R Y+G + 
Sbjct: 357 NHSSVDPSEELSA-TSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRT 415

Query: 238 TIRPNAKKLYKLFVDRNNMTWEEFASKVRTNQI--GFMGEPNEVKPGRGEFHENP-AACI 294
           TIRP+ K L  +F+ R       F   VR   +   F G    V P    F+ N    C 
Sbjct: 416 TIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSP--ESFYTNSWPECF 473

Query: 295 CEDSEAKARELLTPQN 310
           C+ +  K+ +   P N
Sbjct: 474 CQMNPKKSSDKCPPNN 489


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,153,079
Number of Sequences: 539616
Number of extensions: 6144185
Number of successful extensions: 12815
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12809
Number of HSP's gapped (non-prelim): 1
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)