Query 018623
Match_columns 353
No_of_seqs 172 out of 377
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 02:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 3.6E-40 7.8E-45 314.1 4.9 214 6-236 125-345 (351)
2 PF05830 NodZ: Nodulation prot 94.3 0.16 3.4E-06 50.9 7.6 138 51-225 142-290 (321)
3 KOG3849 GDP-fucose protein O-f 92.6 0.35 7.6E-06 48.2 7.0 170 22-234 184-368 (386)
4 PF14771 DUF4476: Domain of un 63.5 2.7 5.9E-05 34.1 0.4 56 133-205 39-94 (95)
5 PF00799 Gemini_AL1: Geminivir 52.7 17 0.00037 31.4 3.5 28 131-159 14-41 (114)
6 PLN02232 ubiquinone biosynthes 49.7 39 0.00084 29.6 5.4 99 50-161 49-153 (160)
7 KOG3705 Glycoprotein 6-alpha-L 45.1 85 0.0018 33.4 7.6 127 54-224 340-478 (580)
8 PF10892 DUF2688: Protein of u 37.1 26 0.00056 27.4 2.0 15 131-146 43-57 (60)
9 smart00874 B5 tRNA synthetase 33.9 35 0.00075 25.8 2.3 24 126-150 12-35 (71)
10 PRK01021 lpxB lipid-A-disaccha 33.4 37 0.0008 37.2 3.1 73 150-222 225-324 (608)
11 PRK15451 tRNA cmo(5)U34 methyl 30.5 1.2E+02 0.0026 28.3 5.7 27 129-155 204-230 (247)
12 TIGR01354 cyt_deam_tetra cytid 30.4 65 0.0014 27.8 3.6 47 134-184 80-127 (127)
13 PF13756 Stimulus_sens_1: Stim 27.7 71 0.0015 27.1 3.3 28 134-161 1-30 (112)
14 PRK05578 cytidine deaminase; V 27.1 73 0.0016 27.9 3.4 95 80-185 26-131 (131)
15 PF04561 RNA_pol_Rpb2_2: RNA p 25.8 22 0.00047 31.0 -0.1 17 139-155 54-70 (190)
16 PF08924 DUF1906: Domain of un 25.5 73 0.0016 27.9 3.1 22 138-159 81-102 (136)
17 PF03801 Ndc80_HEC: HEC/Ndc80p 25.5 43 0.00094 30.1 1.7 42 136-208 94-137 (157)
18 PF03484 B5: tRNA synthetase B 24.7 51 0.0011 25.4 1.8 26 126-152 12-37 (70)
19 PF02324 Glyco_hydro_70: Glyco 24.2 56 0.0012 36.6 2.5 61 150-211 698-777 (809)
20 COG0859 RfaF ADP-heptose:LPS h 23.0 1.3E+02 0.0027 29.6 4.6 71 137-227 198-268 (334)
21 PRK10556 hypothetical protein; 22.1 56 0.0012 28.2 1.6 19 134-152 3-21 (111)
22 cd06418 GH25_BacA-like BacA is 21.5 1E+02 0.0022 29.0 3.4 25 138-162 93-117 (212)
23 PF07862 Nif11: Nitrogen fixat 21.1 75 0.0016 22.7 1.9 29 122-151 16-44 (49)
24 TIGR03006 pepcterm_polyde poly 20.7 2.9E+02 0.0063 26.8 6.4 117 12-164 29-149 (265)
25 COG1312 UxuA D-mannonate dehyd 20.2 1.4E+02 0.0031 30.8 4.3 63 9-72 190-272 (362)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=3.6e-40 Score=314.10 Aligned_cols=214 Identities=39% Similarity=0.678 Sum_probs=150.4
Q ss_pred CCChHHHHHhhhhhhhhc------ceEEEccccccccCC-CChHHHHhhhhhcccccccchhHHHHHHHHHHHHHhccCC
Q 018623 6 KCSPKFYESHVLPILNKK------HAIQLTKFDYRLANK-LDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKH 78 (353)
Q Consensus 6 ~~s~~~Y~~~ilP~l~k~------~VI~l~~~~~rLa~~-lp~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~Rlr~~~~p 78 (353)
+..+.+|+++++|++.++ +||.|.++..++.+. .+.++|| +|+|+++|+++|+++|++++..+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~ 196 (351)
T PF10250_consen 125 WSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDLQR--------YLRFSPEIRELADKFIKRLLAGGGP 196 (351)
T ss_dssp E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGGGG--------G--B-HHHHHHHHHHHHHH----SS
T ss_pred cCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccceE--------EEecCHHHHHHHHHHHHHhhcccCc
Confidence 577888999999999987 999999999999975 7889988 9999999999999999999955689
Q ss_pred eEEEEeecchhhhhhhccCCCCChhHHHHHHHHHHHhhhhcCCCchhhhccCCCCCCHHHHHHHHHHhCCCCcceEEEEe
Q 018623 79 FIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIAS 158 (353)
Q Consensus 79 fiALHLR~E~DMlAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~CPLtPeEvgl~LrAlGf~~~T~IYlA~ 158 (353)
|||+|||+|+|| +++|.+++ ++..|..+|.. ..+.+++...+..|.||++|++++.+++++|+.+.|.||||+
T Consensus 197 yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAt 269 (351)
T PF10250_consen 197 YIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW--GKKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIAT 269 (351)
T ss_dssp EEEEEE--SHHH--HHHHCT-T-------TTTHHHH---GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEE
T ss_pred eEEEeecccCch--HhhcccCC---chHHHHHhHhh--ccccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEec
Confidence 999999999999 99999955 77778777765 223456778899999999999999999999999999999999
Q ss_pred ceeccccccccchHhhCCCcccccccCCccccCcCCCchhhhhhhhhhhhcCCceeeeCCCCchHHHHhhhhhccCCC
Q 018623 159 GEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHK 236 (353)
Q Consensus 159 geiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDvFV~t~~GNma~~v~GhR~y~G~~ 236 (353)
+++|||.+.|.+|+++||++++|+++.+.+|+++|.+ .++|+||++||++||+||+|..++|+.+|+++|.|.|+.
T Consensus 270 d~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 270 DEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp SS-----------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred CcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence 9999999999999999999999999999999999966 899999999999999999999999999999999999964
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=94.25 E-value=0.16 Score=50.87 Aligned_cols=138 Identities=16% Similarity=0.234 Sum_probs=72.5
Q ss_pred cccccccchhHHHHHHHHHHHHHhccCCeEEEEeecc--hhhhhhhccCCCCChhHHHHHHHHHHHhhhhcCCCchhhhc
Q 018623 51 NYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFE--PDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRR 128 (353)
Q Consensus 51 nf~ALrF~p~I~~lg~~LV~Rlr~~~~pfiALHLR~E--~DMlAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~ 128 (353)
-|..|+-+++|++..+.+.+.-=. +..=|++|.|.= +|.+.+ +| .|...+
T Consensus 142 if~slkpR~eIqarID~iy~ehf~-g~~~IGVHVRhGngeD~~~h-~~-----------------~~~D~e--------- 193 (321)
T PF05830_consen 142 IFSSLKPRPEIQARIDAIYREHFA-GYSVIGVHVRHGNGEDIMDH-AP-----------------YWADEE--------- 193 (321)
T ss_dssp HHHHS-B-HHHHHHHHHHHHHHTT-TSEEEEEEE---------------------------------HHHH---------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcC-CCceEEEEEeccCCcchhcc-Cc-----------------cccCch---------
Confidence 488999999999999988776523 346899999931 122221 11 232211
Q ss_pred cCCCCCCHHHHH---HHHHHhCCCCcceEEEEeceeccccccccchHhhCCCcccccccCCccccCcCCCc-----hhhh
Q 018623 129 HGRCPLTPEEVG---LMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSF-----SARM 200 (353)
Q Consensus 129 ~G~CPLtPeEvg---l~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~-----ss~~ 200 (353)
.+=..|- ..++++=...++.|+||+-. .+.++-|++.||.+++-++=..+..-.+.-+. +-..
T Consensus 194 -----~~L~~V~~ai~~ak~~~~~k~~~IFLATDS----aeVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ 264 (321)
T PF05830_consen 194 -----RALRQVCTAIDKAKALAPPKPVRIFLATDS----AEVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGES 264 (321)
T ss_dssp -----HHHHHHHHHHHHHHTS--SS-EEEEEEES-----HHHHHHHHHHSTTEE----------------HHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhccCCCCeeEEEecCc----HHHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHH
Confidence 0011111 23455666678999999988 57889999999999887554332222233211 1135
Q ss_pred hhhhhhhhcCCceee-eCCCCchHHH
Q 018623 201 AALDFIVCDESDVFV-TNNNGNMARI 225 (353)
Q Consensus 201 AALDYiVcl~SDvFV-~t~~GNma~~ 225 (353)
|-+|-+....+|+.| .+-.+.|.+.
T Consensus 265 ALIDM~LLSrCD~LIr~~ptS~Fsr~ 290 (321)
T PF05830_consen 265 ALIDMYLLSRCDYLIRFPPTSAFSRY 290 (321)
T ss_dssp HHHHHHHHTTSSEEEEESTT-GGGHH
T ss_pred HHHHHHHHHhCCeEEEcCCCchhhhH
Confidence 889999999999999 5555555543
No 3
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.35 Score=48.16 Aligned_cols=170 Identities=18% Similarity=0.265 Sum_probs=99.3
Q ss_pred hcceEEEccccccccC-CCChHHHHhhhhhcccccccchhHHHHHHHHHHHHHhccCCeEEEEeecchhhhhhhccCCCC
Q 018623 22 KKHAIQLTKFDYRLAN-KLDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGG 100 (353)
Q Consensus 22 k~~VI~l~~~~~rLa~-~lp~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~Rlr~~~~pfiALHLR~E~DMlAfsgC~~g~ 100 (353)
+|-|+.|++.-....- .---.||| -||.+.+|.+.|++.+..-- .+||+++|||.-.|++-- |.+.-
T Consensus 184 eyPVLAf~gAPA~FPv~~e~~~lQk--------Yl~WS~r~~e~~k~fI~a~L--~rpfvgiHLRng~DWvra--Cehik 251 (386)
T KOG3849|consen 184 EYPVLAFSGAPAPFPVKGEVWSLQK--------YLRWSSRITEQAKKFISANL--ARPFVGIHLRNGADWVRA--CEHIK 251 (386)
T ss_pred cCceeeecCCCCCCccccccccHHH--------HHHHHHHHHHHHHHHHHHhc--CcceeEEEeecCchHHHH--HHHhc
Confidence 4567777765443321 11124776 48899999999998765422 469999999999999864 76543
Q ss_pred ChhHHHHHHHHHHHhhhhcCCCch---hhhc-----cCCCCCCHHHHHHH----HHHhCCCCcceEEEEeceeccccccc
Q 018623 101 GDEERTVLGALRKRWKSLHASNPD---KVRR-----HGRCPLTPEEVGLM----LRALGFGSDVHLYIASGEVYGGRETL 168 (353)
Q Consensus 101 ~~~E~~eL~~~R~~wk~~~~~~~~---~~R~-----~G~CPLtPeEvgl~----LrAlGf~~~T~IYlA~geiyGg~~~l 168 (353)
....+ +... ++. ..+. ...|-=.-++|-.- .+.+| .-..+|||+.. ..|
T Consensus 252 d~~~~--------hlfA----SpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~--dakSVfVAsDs-----~hm 312 (386)
T KOG3849|consen 252 DTTNR--------HLFA----SPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIG--DAKSVFVASDS-----DHM 312 (386)
T ss_pred ccCCC--------cccc----ChhhccccccccccchhhhCccHHHHHHHHHHHHhhhc--ccceEEEeccc-----hhh
Confidence 21100 0000 000 0111 22454444444322 23344 34469999876 233
Q ss_pred c-chH-hhCCCcccccccCCccccCcCCCchhhhhhhhhhhhcCCceeeeCCCCchHHHHhhhhhccC
Q 018623 169 A-PLK-ALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFG 234 (353)
Q Consensus 169 ~-pL~-~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDvFV~t~~GNma~~v~GhR~y~G 234 (353)
. -|. +++|-=..-.. |+| --+-+|..|.-+||-||+|--+.|+.+|--.|-..|
T Consensus 313 i~Eln~aL~~~~i~vh~------l~p------dd~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~G 368 (386)
T KOG3849|consen 313 IDELNEALKPYEIEVHR------LEP------DDMYTDLAILGQADHFIGNCVSSFSAFVKRERDHAG 368 (386)
T ss_pred hHHHHHhhcccceeEEe------cCc------ccchhhhhhhcccchhhhhhHHHHHHHHhhhhcccC
Confidence 3 232 22322111111 111 124578899999999999999999999999998888
No 4
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=63.50 E-value=2.7 Score=34.07 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEEEeceeccccccccchHhhCCCcccccccCCccccCcCCCchhhhhhhhh
Q 018623 133 PLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDF 205 (353)
Q Consensus 133 PLtPeEvgl~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDY 205 (353)
++|-.+++-+|+.+.|+++ .|..|+.++|++++++.--+-.+.-.| .+++..|-+|
T Consensus 39 ~~T~~Qv~~il~~f~fd~~---------------kl~~lk~l~p~i~D~~n~~~i~~~f~f--~s~k~~~~~~ 94 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFDND---------------KLKALKLLYPYIVDPQNYYTIIDAFSF--SSDKDKAREI 94 (95)
T ss_pred ceeHHHHHHHHHHcCCCHH---------------HHHHHHHHhhhccCHHHHHHHHHHhcC--cccHHHHHHh
Confidence 5999999999999999764 799999999999999754433333334 2345555444
No 5
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=52.72 E-value=17 Score=31.42 Aligned_cols=28 Identities=36% Similarity=0.326 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEEec
Q 018623 131 RCPLTPEEVGLMLRALGFGSDVHLYIASG 159 (353)
Q Consensus 131 ~CPLtPeEvgl~LrAlGf~~~T~IYlA~g 159 (353)
.|||+|||+...|++|--+. ...||..+
T Consensus 14 qC~l~ke~~l~~L~~l~~~~-~~~yI~v~ 41 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTPS-NKKYIRVC 41 (114)
T ss_dssp T----HHHHHHHHHH---SS--EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcc-CceEEEee
Confidence 79999999999999997654 56776543
No 6
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=49.71 E-value=39 Score=29.59 Aligned_cols=99 Identities=14% Similarity=-0.037 Sum_probs=57.3
Q ss_pred hcccccccchhHHHHHHHHHHHHHhccCCeEEEEeecchhhhhh----hccCCCCChhHHH--HHHHHHHHhhhhcCCCc
Q 018623 50 VNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAF----SGCYYGGGDEERT--VLGALRKRWKSLHASNP 123 (353)
Q Consensus 50 vnf~ALrF~p~I~~lg~~LV~Rlr~~~~pfiALHLR~E~DMlAf----sgC~~g~~~~E~~--eL~~~R~~wk~~~~~~~ 123 (353)
++.-+|++.++..+.-+.+.+.|+. +|.++-++...+...+.. .-|......-..- ...++++-|..
T Consensus 49 ~~~~~l~~~~d~~~~l~ei~rvLkp-GG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~s------ 121 (160)
T PLN02232 49 TMGYGLRNVVDRLRAMKEMYRVLKP-GSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYS------ 121 (160)
T ss_pred EecchhhcCCCHHHHHHHHHHHcCc-CeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHH------
Confidence 3445677778888888888888876 578887776543221110 0011111000000 00112221111
Q ss_pred hhhhccCCCCCCHHHHHHHHHHhCCCCcceEEEEecee
Q 018623 124 DKVRRHGRCPLTPEEVGLMLRALGFGSDVHLYIASGEV 161 (353)
Q Consensus 124 ~~~R~~G~CPLtPeEvgl~LrAlGf~~~T~IYlA~gei 161 (353)
... +++|+|+..+|+..||.+-+.-+++.|-+
T Consensus 122 -----i~~-f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 122 -----ING-YLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred -----HHH-CcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 112 58999999999999999998888887753
No 7
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=45.11 E-value=85 Score=33.37 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=73.8
Q ss_pred ccccchhHHHHHHHHHHHHHhcc--CCeEEEEeecchhhhhhhccCCCCChhHHHHHHHHHH---HhhhhcCCCchhhhc
Q 018623 54 ALKFTDPIRHIGKMLVERMRLKT--KHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRK---RWKSLHASNPDKVRR 128 (353)
Q Consensus 54 ALrF~p~I~~lg~~LV~Rlr~~~--~pfiALHLR~E~DMlAfsgC~~g~~~~E~~eL~~~R~---~wk~~~~~~~~~~R~ 128 (353)
-+||.|-.++ +|-+.|++.+ .|-|+||.|-. |-+ |+++.--.|..|=. .|-.
T Consensus 340 L~Rpqp~t~~---~l~~a~k~lg~~~PivGvhvRRT-DKV--------GTEAAfH~~eEYM~~vE~~f~----------- 396 (580)
T KOG3705|consen 340 LMRPQPATQE---KLDKALKSLGLDKPIVGVHVRRT-DKV--------GTEAAFHALEEYMEWVEIWFK----------- 396 (580)
T ss_pred HhCCChhhHH---HHHHHHHhCCCCCceeeEEEEec-ccc--------cchhhhhhHHHHHHHHHHHHH-----------
Confidence 4788887765 4555666654 69999999974 222 22221112222221 2322
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcceEEEEeceeccccccccchHhhCCCcccccccCCccccCcCC-------Cchhhhh
Q 018623 129 HGRCPLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFS-------SFSARMA 201 (353)
Q Consensus 129 ~G~CPLtPeEvgl~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~-------~~ss~~A 201 (353)
+|..=|=+-.-+||||+.+. ..+.--+.-|||.. +....|.+.-. .-|...-
T Consensus 397 -------------~le~rg~~~~rRiflAsDDp----~vv~EAk~kYPnYe----~igd~eia~~A~l~nRYTd~sL~Gv 455 (580)
T KOG3705|consen 397 -------------VLEKRGKPLERRIFLASDDP----TVVPEAKNKYPNYE----VIGDTEIAKTAQLNNRYTDASLMGV 455 (580)
T ss_pred -------------HHHHhCCchhheEEEecCCc----hhchHhhccCCCcE----EeccHHHHHHhhccccchhhhhhhe
Confidence 22223444556899999983 34556677899862 33333443222 1123445
Q ss_pred hhhhhhhcCCceeeeCCCCchHH
Q 018623 202 ALDFIVCDESDVFVTNNNGNMAR 224 (353)
Q Consensus 202 ALDYiVcl~SDvFV~t~~GNma~ 224 (353)
-||..+.+.+|..|.|.++..-+
T Consensus 456 IlDIh~LS~~d~LVCTFSSQVCR 478 (580)
T KOG3705|consen 456 ILDIHILSKVDYLVCTFSSQVCR 478 (580)
T ss_pred eeeeeeecccceEEEechHHHHH
Confidence 67999999999999987775443
No 8
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=37.11 E-value=26 Score=27.36 Aligned_cols=15 Identities=47% Similarity=0.724 Sum_probs=12.8
Q ss_pred CCCCCHHHHHHHHHHh
Q 018623 131 RCPLTPEEVGLMLRAL 146 (353)
Q Consensus 131 ~CPLtPeEvgl~LrAl 146 (353)
-| +||||-+.+++++
T Consensus 43 ~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 43 DC-ITPEEDREILEAT 57 (60)
T ss_pred cc-CCHHHHHHHHHHH
Confidence 45 9999999999875
No 9
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=33.90 E-value=35 Score=25.79 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=20.0
Q ss_pred hhccCCCCCCHHHHHHHHHHhCCCC
Q 018623 126 VRRHGRCPLTPEEVGLMLRALGFGS 150 (353)
Q Consensus 126 ~R~~G~CPLtPeEvgl~LrAlGf~~ 150 (353)
.+..|. .++++|+.-+|+.|||.-
T Consensus 12 ~~llG~-~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGL-DLSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCC-CCCHHHHHHHHHHCCCeE
Confidence 345665 599999999999999975
No 10
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=33.37 E-value=37 Score=37.16 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=48.3
Q ss_pred CcceEEEEeceecc---ccccccchHhhCCCccc---------c---cccCCccccCcC------CCc----hhhhhhhh
Q 018623 150 SDVHLYIASGEVYG---GRETLAPLKALFPNLHS---------K---ETLASKYELEPF------SSF----SARMAALD 204 (353)
Q Consensus 150 ~~T~IYlA~geiyG---g~~~l~pL~~~FPnl~t---------K---e~L~s~eEL~pf------~~~----ss~~AALD 204 (353)
.+|.|||.+||.-| |..-+..|++..|++.= + +.|..-+||+-+ ... .-+...++
T Consensus 225 ~~~kIfI~AGE~SGDlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~~~l~~ 304 (608)
T PRK01021 225 SNTSCFISAGEHSGDTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKLWYRYRKLYK 304 (608)
T ss_pred cCCeEEEEeccccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 57899997777543 34678899999998721 1 244444444421 011 12457789
Q ss_pred hhhhcCCceeee-CCCC-ch
Q 018623 205 FIVCDESDVFVT-NNNG-NM 222 (353)
Q Consensus 205 YiVcl~SDvFV~-t~~G-Nm 222 (353)
++..-.-|++|. +++| |+
T Consensus 305 ~i~~~kPD~vIlID~PgFNl 324 (608)
T PRK01021 305 TILKTNPRTVICIDFPDFHF 324 (608)
T ss_pred HHHhcCCCEEEEeCCCCCCH
Confidence 999999999997 7777 55
No 11
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=30.49 E-value=1.2e+02 Score=28.33 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=22.5
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcceEE
Q 018623 129 HGRCPLTPEEVGLMLRALGFGSDVHLY 155 (353)
Q Consensus 129 ~G~CPLtPeEvgl~LrAlGf~~~T~IY 155 (353)
+-..|+|++|..-+|+.-||..-..+|
T Consensus 204 ~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 204 NVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred hhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 446789999999999999999765544
No 12
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=30.43 E-value=65 Score=27.77 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=35.1
Q ss_pred CCHHHHH-HHHHHhCCCCcceEEEEeceeccccccccchHhhCCCccccccc
Q 018623 134 LTPEEVG-LMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETL 184 (353)
Q Consensus 134 LtPeEvg-l~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L 184 (353)
++|--+- .+|..++ +.++.|++...+ |.....+|+++.|.-+.++.|
T Consensus 80 ~sPCG~Crq~l~e~~-~~~~~v~~~~~~---~~~~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 80 VSPCGACRQVLAEFA-GPDTPIYMTNND---GTYKVYTVGELLPFGFGPSDL 127 (127)
T ss_pred cCccHHHHHHHHHhC-CCCcEEEEECCC---CCEEEEEHHHhCcCcCCcCcC
Confidence 4555444 5788887 678999998877 555567999999998877654
No 13
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=27.66 E-value=71 Score=27.07 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHhCCCCcce--EEEEecee
Q 018623 134 LTPEEVGLMLRALGFGSDVH--LYIASGEV 161 (353)
Q Consensus 134 LtPeEvgl~LrAlGf~~~T~--IYlA~gei 161 (353)
|+||.++-||+-|.-+++|+ ||=+.|.+
T Consensus 1 l~pe~a~plLrrL~~Pt~~RARlyd~dG~L 30 (112)
T PF13756_consen 1 LNPERARPLLRRLISPTRTRARLYDPDGNL 30 (112)
T ss_pred CCHHHHHHHHHHhCCCCCceEEEECCCCCE
Confidence 68999999999999999996 55455554
No 14
>PRK05578 cytidine deaminase; Validated
Probab=27.07 E-value=73 Score=27.93 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=55.3
Q ss_pred EEEEeecchhhhhhhccCCC------CChhHHHHHHHHHHH----hhhhcCCCchhhhccCCCCCCHHHHH-HHHHHhCC
Q 018623 80 IALHLRFEPDMLAFSGCYYG------GGDEERTVLGALRKR----WKSLHASNPDKVRRHGRCPLTPEEVG-LMLRALGF 148 (353)
Q Consensus 80 iALHLR~E~DMlAfsgC~~g------~~~~E~~eL~~~R~~----wk~~~~~~~~~~R~~G~CPLtPeEvg-l~LrAlGf 148 (353)
++-.+|.+ |=-.|.||.-- +.-.|+..|.++=.. .+..-++. +. .-+++|==.= .+|..++
T Consensus 26 Vgaa~~~~-~G~i~~G~nvEna~~~~~~CAE~~Ai~~av~~G~~~i~~i~vv~----~~--~~~~sPCG~CRQ~l~e~~- 97 (131)
T PRK05578 26 VGAALLTD-DGRIYTGCNIENASYGLTNCAERTAIFKAISEGGGRLVAIACVG----ET--GEPLSPCGRCRQVLAEFG- 97 (131)
T ss_pred eEEEEEeC-CCCEEEEEEeeCccccCCcCHHHHHHHHHHHcCCCceEEEEEEe----cC--CCccCccHHHHHHHHHhC-
Confidence 67777775 55556665322 224577777665321 11111111 11 1234443222 4566664
Q ss_pred CCcceEEEEeceeccccccccchHhhCCCcccccccC
Q 018623 149 GSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLA 185 (353)
Q Consensus 149 ~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L~ 185 (353)
+.+|.||+...+ |.....+|+++.|.-++++.|+
T Consensus 98 ~~~~~v~l~~~~---~~~~~~~l~eLLP~~f~~~~l~ 131 (131)
T PRK05578 98 GPDLLVTLVAKD---GPTGEMTLGELLPYAFTPDDLG 131 (131)
T ss_pred CCCcEEEEEcCC---CCEEEEEHHHhCcCcCChhhcC
Confidence 578999999876 5555689999999999888764
No 15
>PF04561 RNA_pol_Rpb2_2: RNA polymerase Rpb2, domain 2; InterPro: IPR007642 RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain []. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble. Many of the bacterial members contain large insertions within this domain, a region known as dispensable region 1 (DRI).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 2Y0S_R 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C ....
Probab=25.82 E-value=22 Score=30.99 Aligned_cols=17 Identities=41% Similarity=0.686 Sum_probs=12.2
Q ss_pred HHHHHHHhCCCCcceEE
Q 018623 139 VGLMLRALGFGSDVHLY 155 (353)
Q Consensus 139 vgl~LrAlGf~~~T~IY 155 (353)
+.++|||||+.++.-||
T Consensus 54 i~ilLrALG~~sd~eI~ 70 (190)
T PF04561_consen 54 IVILLRALGIESDKEII 70 (190)
T ss_dssp HHHHHHHTT--STCHHH
T ss_pred eEEeehhhcCcCccccc
Confidence 67899999998876555
No 16
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=25.50 E-value=73 Score=27.89 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCCcceEEEEec
Q 018623 138 EVGLMLRALGFGSDVHLYIASG 159 (353)
Q Consensus 138 Evgl~LrAlGf~~~T~IYlA~g 159 (353)
.....-++||||..|.||.|--
T Consensus 81 ~A~~~A~~lG~p~gt~IYfavD 102 (136)
T PF08924_consen 81 DAVAAARALGFPAGTPIYFAVD 102 (136)
T ss_dssp HHHHHHHHTT--SS-EEEEE--
T ss_pred HHHHHHHHcCCCCCCEEEEEee
Confidence 4446678999999999999976
No 17
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=25.45 E-value=43 Score=30.08 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCcceEEEEeceeccccccccchHhhCCCcccccccCCccccCcCCCc--hhhhhhhhhhhh
Q 018623 136 PEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSF--SARMAALDFIVC 208 (353)
Q Consensus 136 PeEvgl~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~--ss~~AALDYiVc 208 (353)
-|||-.+||.||||-- ..+|+.|.+.. ..| ...++||+++|=
T Consensus 94 eeev~~~lK~L~YP~~--------------------------~isKS~L~a~g-----s~hsWP~lL~~L~WLv~ 137 (157)
T PF03801_consen 94 EEEVPFLLKALGYPFA--------------------------TISKSSLQAPG-----SPHSWPHLLGALHWLVE 137 (157)
T ss_dssp HHHHHHHHHHTT-SS------------------------------HHHHHSTT-----STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcc--------------------------ccCHHHccCCC-----CcccHHHHHHHHHHHHH
Confidence 4688899999997631 35688887755 334 578999999874
No 18
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=24.66 E-value=51 Score=25.36 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=17.5
Q ss_pred hhccCCCCCCHHHHHHHHHHhCCCCcc
Q 018623 126 VRRHGRCPLTPEEVGLMLRALGFGSDV 152 (353)
Q Consensus 126 ~R~~G~CPLtPeEvgl~LrAlGf~~~T 152 (353)
.+..|. .++++|+.-+|+.|||.-..
T Consensus 12 ~~~lG~-~i~~~~i~~~L~~lg~~~~~ 37 (70)
T PF03484_consen 12 NKLLGI-DISPEEIIKILKRLGFKVEK 37 (70)
T ss_dssp HHHHTS----HHHHHHHHHHTT-EEEE
T ss_pred HHHhCC-CCCHHHHHHHHHHCCCEEEE
Confidence 345565 59999999999999998554
No 19
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=24.21 E-value=56 Score=36.64 Aligned_cols=61 Identities=21% Similarity=0.446 Sum_probs=39.1
Q ss_pred CcceEEEEe----ce----eccccccccchHhhCCCcccccccCCccccCcC----------CCchh-hhhhhhhhhhcC
Q 018623 150 SDVHLYIAS----GE----VYGGRETLAPLKALFPNLHSKETLASKYELEPF----------SSFSA-RMAALDFIVCDE 210 (353)
Q Consensus 150 ~~T~IYlA~----ge----iyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf----------~~~ss-~~AALDYiVcl~ 210 (353)
-...+|+|- |+ -||| ..|+-|++.||.|+++..+.+..-.-|= .|-++ +.-..+|++...
T Consensus 698 i~n~lY~a~T~ggG~dyQ~~YGG-~fLdeLq~~YP~lF~~~qiSTG~~idps~kIk~WSAKYfNGTNI~grGa~YVLkd~ 776 (809)
T PF02324_consen 698 INNTLYVANTKGGGKDYQAKYGG-AFLDELQKKYPDLFTTKQISTGVPIDPSVKIKEWSAKYFNGTNIQGRGAGYVLKDW 776 (809)
T ss_dssp TSSEEEEEEEEB-CHSHHHHHTT-TTHHHHHHH-GGGCCSEETTTSSB--TTS--SSB-GGGEEEEE--SS-TTSB-EET
T ss_pred ecceeEEEecccccHhHHHHHhH-HHHHHHHHhChHhhhccccccCCCCCccchhhhhhhhhcCCCccccCccceEeecc
Confidence 345799985 44 6888 6999999999999999999886533332 12222 446677777764
Q ss_pred C
Q 018623 211 S 211 (353)
Q Consensus 211 S 211 (353)
+
T Consensus 777 ~ 777 (809)
T PF02324_consen 777 A 777 (809)
T ss_dssp T
T ss_pred C
Confidence 3
No 20
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.96 E-value=1.3e+02 Score=29.57 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCCcceEEEEeceeccccccccchHhhCCCcccccccCCccccCcCCCchhhhhhhhhhhhcCCceeee
Q 018623 137 EEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVT 216 (353)
Q Consensus 137 eEvgl~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDvFV~ 216 (353)
.|+...|.+-| .+|.|.+|. .=.+..+-+.+..++.+. |+.. .+...+...| ..||.||+
T Consensus 198 ~~l~~~l~~~~----~~Vvl~g~~--~e~e~~~~i~~~~~~~~~---l~~k---------~sL~e~~~li--~~a~l~I~ 257 (334)
T COG0859 198 AELAELLIAKG----YQVVLFGGP--DEEERAEEIAKGLPNAVI---LAGK---------TSLEELAALI--AGADLVIG 257 (334)
T ss_pred HHHHHHHHHCC----CEEEEecCh--HHHHHHHHHHHhcCCccc---cCCC---------CCHHHHHHHH--hcCCEEEc
Confidence 36777788877 789998877 233344567777777655 3222 2322222222 57999999
Q ss_pred CCCCchHHHHh
Q 018623 217 NNNGNMARILA 227 (353)
Q Consensus 217 t~~GNma~~v~ 227 (353)
+-.|-|.=+-+
T Consensus 258 ~DSg~~HlAaA 268 (334)
T COG0859 258 NDSGPMHLAAA 268 (334)
T ss_pred cCChHHHHHHH
Confidence 88885544433
No 21
>PRK10556 hypothetical protein; Provisional
Probab=22.06 E-value=56 Score=28.24 Aligned_cols=19 Identities=47% Similarity=0.761 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHhCCCCcc
Q 018623 134 LTPEEVGLMLRALGFGSDV 152 (353)
Q Consensus 134 LtPeEvgl~LrAlGf~~~T 152 (353)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLe~aGF~~D~ 21 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDV 21 (111)
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998774
No 22
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=21.47 E-value=1e+02 Score=29.05 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCCcceEEEEeceec
Q 018623 138 EVGLMLRALGFGSDVHLYIASGEVY 162 (353)
Q Consensus 138 Evgl~LrAlGf~~~T~IYlA~geiy 162 (353)
+....-++|||+..|.||+|--.-.
T Consensus 93 ~A~~~A~~lG~p~gs~IYfavD~d~ 117 (212)
T cd06418 93 DAVAAARALGFPPGTIIYFAVDFDA 117 (212)
T ss_pred HHHHHHHHcCCCCCCEEEEEeecCC
Confidence 3445678999999999999987643
No 23
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=21.06 E-value=75 Score=22.72 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=22.2
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhCCCCc
Q 018623 122 NPDKVRRHGRCPLTPEEVGLMLRALGFGSD 151 (353)
Q Consensus 122 ~~~~~R~~G~CPLtPeEvgl~LrAlGf~~~ 151 (353)
|+..+..-..|. +|+|+.-+-+..||.=+
T Consensus 16 d~~l~~~l~~~~-~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 16 DPELREQLKACQ-NPEEVVALAREAGYDFT 44 (49)
T ss_pred CHHHHHHHHhcC-CHHHHHHHHHHcCCCCC
Confidence 555555555675 99999999999999743
No 24
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=20.68 E-value=2.9e+02 Score=26.80 Aligned_cols=117 Identities=16% Similarity=0.134 Sum_probs=60.2
Q ss_pred HHHhhhhhhhhcceEEEcccc-ccccCCCChHHHHhhhhhcccccccchhHHHHHHHHHHHHHhccCCeEEEEeecchhh
Q 018623 12 YESHVLPILNKKHAIQLTKFD-YRLANKLDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDM 90 (353)
Q Consensus 12 Y~~~ilP~l~k~~VI~l~~~~-~rLa~~lp~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~Rlr~~~~pfiALHLR~E~DM 90 (353)
....||++|++++|- .|-|- ...+... -.+|++|.+. |+=||.|=-.=.++
T Consensus 29 nt~riL~lL~~~gik-ATFFv~g~~~e~~--------------------------p~lir~i~~~-GhEIgsHg~sH~~l 80 (265)
T TIGR03006 29 NTDRILDLLDRHGVK-ATFFTLGWVAERY--------------------------PELVRRIVAA-GHELASHGYGHERV 80 (265)
T ss_pred hHHHHHHHHHHcCCc-EEEEEeccchhhC--------------------------HHHHHHHHHc-CCEeeeccccCcCc
Confidence 578899999999972 11111 1111111 1457888775 68999994322211
Q ss_pred hhhhccCCCCC-hhHHHHHHHHHHHhhhhcCCCchhhhccCCCCCCHH--HHHHHHHHhCCCCcceEEEEeceeccc
Q 018623 91 LAFSGCYYGGG-DEERTVLGALRKRWKSLHASNPDKVRRHGRCPLTPE--EVGLMLRALGFGSDVHLYIASGEVYGG 164 (353)
Q Consensus 91 lAfsgC~~g~~-~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~CPLtPe--Evgl~LrAlGf~~~T~IYlA~geiyGg 164 (353)
...+ ++++++|.+.+..-.......+.--|--+.+ .++. .+--+|+..||.-+..+|=...+.||.
T Consensus 81 -------~~ls~ee~~~eI~~s~~~Le~itG~~~~gfRaP~~s-~~~~t~~a~~iL~e~Gy~YdsS~~p~~~d~~g~ 149 (265)
T TIGR03006 81 -------TTQTPEAFRADIRRSKALLEDLSGQPVRGYRAPSFS-IGKKNLWALDVLAEAGYRYSSSIYPVRHDHYGM 149 (265)
T ss_pred -------hhCCHHHHHHHHHHHHHHHHHHhCCCceEEECCCCC-CCCCcHHHHHHHHHCCCEEEEeeccCcCCcCCC
Confidence 1122 3345556555542221111111122322221 2222 234689999999888887544566764
No 25
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=20.16 E-value=1.4e+02 Score=30.77 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=44.9
Q ss_pred hHHHHHhhhhhhhhcce-EEEcccccccc-CCCC------hHHHHhh------------hhhcccccccchhHHHHHHHH
Q 018623 9 PKFYESHVLPILNKKHA-IQLTKFDYRLA-NKLD------TDLQKLR------------CRVNYHALKFTDPIRHIGKML 68 (353)
Q Consensus 9 ~~~Y~~~ilP~l~k~~V-I~l~~~~~rLa-~~lp------~eiQrLR------------Crvnf~ALrF~p~I~~lg~~L 68 (353)
-.|++++|.|+-.+.|| +.+-|-|+-.. .+|| .++|+|. |.-+|.+.-. .+|-++....
T Consensus 190 L~yFL~~ViPVAEe~gVkmaiHPDDPP~pi~GLpRIvst~ed~~~ll~~vdSp~NGiTlCtGS~G~~~d-nDl~~mir~F 268 (362)
T COG1312 190 LAYFLKEVIPVAEEVGVKMAIHPDDPPWPIFGLPRIVSTIEDYQRLLEMVDSPYNGITLCTGSLGARAD-NDLPEMIREF 268 (362)
T ss_pred HHHHHHhhcchHHhcCceEEeCCCCCCccccCcchhcCCHHHHHHHHHhccCccCCEEEeccccccCcc-ccHHHHHHHH
Confidence 46999999999999999 77777787665 3565 5888875 5556655433 5566666666
Q ss_pred HHHH
Q 018623 69 VERM 72 (353)
Q Consensus 69 V~Rl 72 (353)
.+|+
T Consensus 269 ~~rI 272 (362)
T COG1312 269 ASRI 272 (362)
T ss_pred hhhc
Confidence 6654
Done!