Query 018623
Match_columns 353
No_of_seqs 172 out of 377
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 03:31:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 98.8 1.1E-08 3.7E-13 100.2 8.0 166 53-237 217-383 (408)
2 3zy2_A Putative GDP-fucose pro 98.6 1.2E-07 4.1E-12 93.4 9.8 172 22-234 165-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 96.7 0.013 4.4E-07 60.1 12.8 144 55-233 274-420 (526)
4 2hhc_A NODZ, nodulation fucosy 94.3 0.25 8.4E-06 46.3 10.4 139 52-227 145-294 (330)
5 3l32_A Phosphoprotein; antipar 47.1 8.1 0.00028 27.6 1.6 25 54-79 2-26 (45)
6 1l2m_A REP protein; A+B fold, 30.8 54 0.0019 27.4 4.4 28 131-159 17-44 (118)
7 2igp_A Retinoblastoma-associat 27.3 30 0.001 28.7 2.2 41 136-208 72-114 (120)
8 2eqr_A N-COR1, N-COR, nuclear 27.1 41 0.0014 24.3 2.7 20 128-147 9-28 (61)
9 1p3q_Q VPS9P, vacuolar protein 24.8 16 0.00056 26.9 0.1 38 166-208 14-51 (54)
10 2fr5_A Cytidine deaminase; tet 22.3 73 0.0025 27.2 3.8 94 80-184 38-142 (146)
11 1wgl_A TOLL-interacting protei 22.2 20 0.0007 26.4 0.2 49 165-218 10-58 (59)
12 2g7j_A Putative cytoplasmic pr 20.6 38 0.0013 28.5 1.6 19 134-152 3-21 (124)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=98.77 E-value=1.1e-08 Score=100.18 Aligned_cols=166 Identities=18% Similarity=0.249 Sum_probs=98.4
Q ss_pred cccccchhHHHHHHHHHHHHHhccCCeEEEEeecchhhhhhhccCCCCChhHHHHHHHHHHHhhhhcCCCchhhhccCCC
Q 018623 53 HALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRHGRC 132 (353)
Q Consensus 53 ~ALrF~p~I~~lg~~LV~Rlr~~~~pfiALHLR~E~DMlAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~C 132 (353)
..|+|++.|.++|++.++..-. ++|+++|+|...|+... |.......-. .+...+.-..+-......|
T Consensus 217 r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~r~~~dw~~~--~~~~~~~~~~--------~y~~~H~Rr~d~~~~~~~~ 284 (408)
T 4ap5_A 217 RSMVFARHLREVGDEFRSRHLN--STDDADRIPFQEDWMKM--KVKLGSALGG--------PYLGVHLRRKDFIWGHRQD 284 (408)
T ss_dssp HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTCCCCSSGGGC--CCCTTCBCCE--------EEEEEEECCTTTTTTTCSS
T ss_pred HHhhhhHHHHHHHHHHHHHHhC--cccceeecccchhHhhh--hcccccccCC--------Cccccccccccchhhhhcc
Confidence 4799999999999998887643 36666666666665542 3221100000 0000000000000111122
Q ss_pred -CCCHHHHHHHHHHhCCCCcceEEEEeceeccccccccchHhhCCCcccccccCCccccCcCCCchhhhhhhhhhhhcCC
Q 018623 133 -PLTPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDES 211 (353)
Q Consensus 133 -PLtPeEvgl~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~S 211 (353)
|-.+.-+..+.+.+-=-+-+.||||+-+ ....+.-|++.+|.++.-.. ..+++..+ .....|.||-.||.+|
T Consensus 285 ~ps~~~~~~~i~~~~~~~~~~~VyiATD~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a 357 (408)
T 4ap5_A 285 VPSLEGAVRKIRSLMKTHRLDKVFVATDA---VRKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHA 357 (408)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSCEEEEECC---CHHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCC---chhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhC
Confidence 3222222222222222234579999875 34456789999998754322 22334444 2346799999999999
Q ss_pred ceeeeCCCCchHHHHhhhhhccCCCC
Q 018623 212 DVFVTNNNGNMARILAGRRRYFGHKP 237 (353)
Q Consensus 212 DvFV~t~~GNma~~v~GhR~y~G~~k 237 (353)
|+||+|..++|+..|.=.|-+.|+..
T Consensus 358 ~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 358 RFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp EEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred CeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 99999999999999999999999764
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.60 E-value=1.2e-07 Score=93.38 Aligned_cols=172 Identities=16% Similarity=0.236 Sum_probs=109.5
Q ss_pred hcceEEEccccccccCC-CChHHHHhhhhhcccccccchhHHHHHHHHHHHHHhccCCeEEEEeecchhhhhhhccCCCC
Q 018623 22 KKHAIQLTKFDYRLANK-LDTDLQKLRCRVNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGG 100 (353)
Q Consensus 22 k~~VI~l~~~~~rLa~~-lp~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~Rlr~~~~pfiALHLR~E~DMlAfsgC~~g~ 100 (353)
+|=|+.|++.-..-.-. -.-.||| -|++++.|.+.|++.++.-- .+||||||||-=.|+.-. |.+.-
T Consensus 165 ~~pVlAf~gaPa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L--~rpyVgIHLR~G~DW~~a--C~hlk 232 (362)
T 3zy2_A 165 EYPVLAFSSAPAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL--AKPFVAVHLRNDADWVRV--CEHID 232 (362)
T ss_dssp TCSEEEESSCSSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC--CSSEEEEEECCCHHHHHH--HHTCC
T ss_pred cCceEeecCCCCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc--CCCeEEEEEecCCcHHHH--Hhhhc
Confidence 56788888764433211 1135665 69999999999999888743 359999999999899766 77532
Q ss_pred Chh------HHHHHHHHHHHhhhhc-CCCchhhhccCCCCCCHHH----HHHHHHHhCCCCcceEEEEeceecccccccc
Q 018623 101 GDE------ERTVLGALRKRWKSLH-ASNPDKVRRHGRCPLTPEE----VGLMLRALGFGSDVHLYIASGEVYGGRETLA 169 (353)
Q Consensus 101 ~~~------E~~eL~~~R~~wk~~~-~~~~~~~R~~G~CPLtPeE----vgl~LrAlGf~~~T~IYlA~geiyGg~~~l~ 169 (353)
..+ .-.=+ .|.+.. .+ ....|==+.++ |..+++.++ -..||||+-. ...+.
T Consensus 233 ~~~~~~lfaSPQC~-----Gy~~~~~~l------t~emClPSle~I~rqIk~~vk~~~---lksVFIATDa----~~~~~ 294 (362)
T 3zy2_A 233 TTTNRPLFASEQCL-----GEGHHLGTL------TKEICSPSKQQILEQIVEKVGSIG---AKSVFVASDK----DHMID 294 (362)
T ss_dssp TTTCCCCTTTHHHH-----CGGGTTCCC------CHHHHSCCHHHHHHHHHHHHHHHT---CSEEEEEESS----CCCHH
T ss_pred cccCcccccCCccc-----CCcccCccc------chhccCCCHHHHHHHHHHHHHhcC---CcEEEEecCC----HHHHH
Confidence 100 00000 011000 00 01123223333 334455554 5689999965 34577
Q ss_pred chHhhCCCcccccccCCccccCcCCCchhhhhhhhhhhhcCCceeeeCCCCchHHHHhhhhhccC
Q 018623 170 PLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFG 234 (353)
Q Consensus 170 pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDvFV~t~~GNma~~v~GhR~y~G 234 (353)
-|+++|+...- .+.+ +.| -.|+||.+||.+||+||+|..+.|...|.-.|--.|
T Consensus 295 ELk~~L~~~~v--~vv~---~~p------e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 295 EINEALKPYEI--EAHR---QEP------DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHHHHHGGGTC--CEEC---CSS------CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHHHHhhccCc--eEEE---eCC------chhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 88888875211 1111 111 179999999999999999999999999999999888
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=96.74 E-value=0.013 Score=60.14 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=87.4
Q ss_pred cccchhHHHHHHHHHHHHHhccCCeEEEEeecchhhhhhhccCCCCChhHHHHHHHHHHHhhhhcCCCchhhhccCCCCC
Q 018623 55 LKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRHGRCPL 134 (353)
Q Consensus 55 LrF~p~I~~lg~~LV~Rlr~~~~pfiALHLR~E~DMlAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~CPL 134 (353)
+|+.+.|++.-+++.+.+.- ++|.|+||.|-= |-++.. ....+- ..-+..+.. |-.
T Consensus 274 ~rP~~~i~~~I~~~~~~l~~-~~piVGVHIRrG-Dk~~~E---~~~~~~-~~Y~~~v~~-~~~----------------- 329 (526)
T 2de0_X 274 IRPQPWLEKEIEEATKKLGF-KHPVIGVHVRRT-DKVGTE---AAFHPI-EEYMVHVEE-HFQ----------------- 329 (526)
T ss_dssp TCBCHHHHHHHHHHHHHHTC-CSSEEEEEECCC------C---CCSCSH-HHHHHHHHH-HHH-----------------
T ss_pred cCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeCC-CCCccc---cccCCH-HHHHHHHHH-HHH-----------------
Confidence 78999999999888888754 579999999963 443321 111111 111111111 111
Q ss_pred CHHHHHHHHHHhCCCCcceEEEEeceeccccccccchHhhCCCc--ccccccC-CccccCcCCCchhhhhhhhhhhhcCC
Q 018623 135 TPEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNL--HSKETLA-SKYELEPFSSFSARMAALDFIVCDES 211 (353)
Q Consensus 135 tPeEvgl~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl--~tKe~L~-s~eEL~pf~~~ss~~AALDYiVcl~S 211 (353)
.|+.......+.||||+.+ ...+.-+++.||+. ++-.... +...-..+...+-..+.+|.++.+++
T Consensus 330 -------~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~c 398 (526)
T 2de0_X 330 -------LLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQA 398 (526)
T ss_dssp -------HHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHS
T ss_pred -------HHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcC
Confidence 1222246778899999988 35667778889986 2211111 11111111111235688999999999
Q ss_pred ceeeeCCCCchHHHHhhhhhcc
Q 018623 212 DVFVTNNNGNMARILAGRRRYF 233 (353)
Q Consensus 212 DvFV~t~~GNma~~v~GhR~y~ 233 (353)
|+||.+.++||++++...+.-.
T Consensus 399 d~~Vgt~sS~~srla~~l~~~~ 420 (526)
T 2de0_X 399 DFLVCTFSSQVCRVAYEIMQTL 420 (526)
T ss_dssp SEEEECTTSHHHHHHHHHHTTS
T ss_pred CeeecCCCCHHHHHHHHHhcCc
Confidence 9999999999999988766543
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=94.34 E-value=0.25 Score=46.33 Aligned_cols=139 Identities=14% Similarity=0.195 Sum_probs=74.1
Q ss_pred ccccccchhHHHHHHHHHHHHHhccCCeEEEEeecchhhhhhhccCCCCC-hhHHHHHHHHHHHhhhhcCCCchhhhccC
Q 018623 52 YHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGG-DEERTVLGALRKRWKSLHASNPDKVRRHG 130 (353)
Q Consensus 52 f~ALrF~p~I~~lg~~LV~Rlr~~~~pfiALHLR~E~DMlAfsgC~~g~~-~~E~~eL~~~R~~wk~~~~~~~~~~R~~G 130 (353)
|+-|+++++|++..+.+.+.+-. +.++|+||.|.=-+. ..|.++.. .+...-+..+.+
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~~-~~~~VGVHIRrgD~~---~~~~~~~~~~~~~~~l~~~~~----------------- 203 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHFS-GHSIIGVHVRHGNGE---DIMEHAPYWADSELALHQVCM----------------- 203 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHTT-TSEEEEEEECC---------------CHHHHHHHHHHHH-----------------
T ss_pred HhcCCccHHHHHHHHHHHHHhcc-CCceEEEEEecCCCC---cccccCcchHHHhHHHHHHHH-----------------
Confidence 46789999999998888766423 369999999953221 12222110 000000111111
Q ss_pred CCCCCHHHHHHHHHHh-C-CC-CcceEEEEeceeccccccccchHhhCCCccccc-ccCCccccCcCC-C----chhhhh
Q 018623 131 RCPLTPEEVGLMLRAL-G-FG-SDVHLYIASGEVYGGRETLAPLKALFPNLHSKE-TLASKYELEPFS-S----FSARMA 201 (353)
Q Consensus 131 ~CPLtPeEvgl~LrAl-G-f~-~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe-~L~s~eEL~pf~-~----~ss~~A 201 (353)
.++.+ . .+ .++.||||+-+. ..++-|+++||++..-. .+..... .+.. . .....+
T Consensus 204 -----------~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~ 267 (330)
T 2hhc_A 204 -----------AIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRA-GPLHSAEMGIEGGASA 267 (330)
T ss_dssp -----------HHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC------------CHHHHHHHHHHH
T ss_pred -----------HHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccc-cccccCchhhccchHH
Confidence 01100 0 12 468999999985 35678999999843321 1110000 0000 0 123568
Q ss_pred hhhhhhhcCCceee-eCCCCchHHHHh
Q 018623 202 ALDFIVCDESDVFV-TNNNGNMARILA 227 (353)
Q Consensus 202 ALDYiVcl~SDvFV-~t~~GNma~~v~ 227 (353)
.+|.+....+|.+| ....++|+-..+
T Consensus 268 ~~Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 268 LIDMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred HHHHHHHHcCCeeEECCCCCCHHHHHH
Confidence 89999999999999 544666766544
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=47.07 E-value=8.1 Score=27.58 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=20.0
Q ss_pred ccccchhHHHHHHHHHHHHHhccCCe
Q 018623 54 ALKFTDPIRHIGKMLVERMRLKTKHF 79 (353)
Q Consensus 54 ALrF~p~I~~lg~~LV~Rlr~~~~pf 79 (353)
|+-|+.-+.++|.+||.||++ |..|
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt-Ge~F 26 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS-GERF 26 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TCCH
T ss_pred CccHHHHHHHHHHHHHHHHHc-cccH
Confidence 456778899999999999998 4344
No 6
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=30.83 E-value=54 Score=27.44 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEEec
Q 018623 131 RCPLTPEEVGLMLRALGFGSDVHLYIASG 159 (353)
Q Consensus 131 ~CPLtPeEvgl~LrAlGf~~~T~IYlA~g 159 (353)
.|||++||+...|+.|--+.+ ..||...
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~ 44 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeeh
Confidence 799999999999999986654 4454443
No 7
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=27.27 E-value=30 Score=28.72 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCcceEEEEeceeccccccccchHhhCCCcccccccCCccccCcCCCc--hhhhhhhhhhhh
Q 018623 136 PEEVGLMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETLASKYELEPFSSF--SARMAALDFIVC 208 (353)
Q Consensus 136 PeEvgl~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~--ss~~AALDYiVc 208 (353)
-|||-.+||+||||- ..||+.|.+.. ..| ++.++||+++|=
T Consensus 72 eeev~~~lK~L~YP~---------------------------~isKS~L~a~g-----~pHsWp~~L~~L~WLve 114 (120)
T 2igp_A 72 EEEVPRIFKDLGYPF---------------------------ALSKSSMYTVG-----APHTWPHIVAALVWLID 114 (120)
T ss_dssp HHHHHHHHHHTTCCS---------------------------CCCHHHHHTTT-----STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCc---------------------------eeCHHHhcCCC-----CCccHHHHHHHHHHHHH
Confidence 478889999999763 35678877754 223 468899998873
No 8
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.07 E-value=41 Score=24.31 Aligned_cols=20 Identities=15% Similarity=-0.046 Sum_probs=17.4
Q ss_pred ccCCCCCCHHHHHHHHHHhC
Q 018623 128 RHGRCPLTPEEVGLMLRALG 147 (353)
Q Consensus 128 ~~G~CPLtPeEvgl~LrAlG 147 (353)
++...|.||+|..+|++++-
T Consensus 9 r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHH
Confidence 46778999999999999874
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=24.76 E-value=16 Score=26.85 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=18.4
Q ss_pred ccccchHhhCCCcccccccCCccccCcCCCchhhhhhhhhhhh
Q 018623 166 ETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVC 208 (353)
Q Consensus 166 ~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVc 208 (353)
..+.-|++|||++- ++.+-+ -| ..+.+...+|||....
T Consensus 14 ~~~~~L~~MFP~lD-~evI~~--Vl--~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD-PSLIED--VC--IAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTSC-HHHHHH--HH--HHSCC--CGGGC----
T ss_pred HHHHHHHHHcccCC-HHHHHH--HH--HHcCCCHHHHHHHHHh
Confidence 45788999999983 333211 11 1233456677776543
No 10
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=22.28 E-value=73 Score=27.18 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=54.0
Q ss_pred EEEEeecchhhhhhhccCCCCC---hhHHHHHHHHHHHhhhhc------CCCchhhhccCCCC-CCHHHH-HHHHHHhCC
Q 018623 80 IALHLRFEPDMLAFSGCYYGGG---DEERTVLGALRKRWKSLH------ASNPDKVRRHGRCP-LTPEEV-GLMLRALGF 148 (353)
Q Consensus 80 iALHLR~E~DMlAfsgC~~g~~---~~E~~eL~~~R~~wk~~~------~~~~~~~R~~G~CP-LtPeEv-gl~LrAlGf 148 (353)
++--++.+.. -.|+||.--.. ..-..|..++++.+.... .+... .+. | ++|=-. --+|..+|
T Consensus 38 VGAal~~~dG-~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~G~~~l~~i~v~~~----~~~-~~~~PCG~Crq~l~E~~- 110 (146)
T 2fr5_A 38 VGAALLTGDG-RIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSD----LQE-EFISPCGACRQVMREFG- 110 (146)
T ss_dssp EEEEEEETTS-CEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEES----CSS-SCCCCCHHHHHHHHHTC-
T ss_pred EEEEEEeCCC-cEEEEEeccccCCCCCcCHHHHHHHHHHhCCCCceEEEEEEeC----CCC-cccCCCHHHHHHHHHhC-
Confidence 5555776544 55678864422 123344455565443311 11111 111 2 344222 24677777
Q ss_pred CCcceEEEEeceeccccccccchHhhCCCccccccc
Q 018623 149 GSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETL 184 (353)
Q Consensus 149 ~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L 184 (353)
.++.||++..+ |.....+|.++.|.-++.+.|
T Consensus 111 -~~~~v~~~~~~---g~~~~~~l~eLLP~~F~~~~l 142 (146)
T 2fr5_A 111 -TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDL 142 (146)
T ss_dssp -SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGG
T ss_pred -CCCEEEEECCC---CCEEEEEHHHhCCCCCChHHH
Confidence 78999999865 544567899999999988776
No 11
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.18 E-value=20 Score=26.41 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=31.4
Q ss_pred cccccchHhhCCCcccccccCCccccCcCCCchhhhhhhhhhhhcCCceeeeCC
Q 018623 165 RETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNN 218 (353)
Q Consensus 165 ~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDvFV~t~ 218 (353)
+..++-|++|||++- ++.|- .-|.. +.....+|||-+..+..+-|=|++
T Consensus 10 ee~l~~L~emFP~ld-~~~I~--~vL~a--~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMD-QEVIR--SVLEA--QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHHH--HHHTT--TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-HHHHH--HHHHH--cCCCHHHHHHHHHcCcCCCCCCCC
Confidence 456788999999983 22221 11222 234688999999888877665543
No 12
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=20.61 E-value=38 Score=28.53 Aligned_cols=19 Identities=47% Similarity=0.761 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHhCCCCcc
Q 018623 134 LTPEEVGLMLRALGFGSDV 152 (353)
Q Consensus 134 LtPeEvgl~LrAlGf~~~T 152 (353)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999997764
Done!