Query 018623
Match_columns 353
No_of_seqs 172 out of 377
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 03:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018623.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018623hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 48.2 9.6 0.0007 30.1 4.5 26 131-157 17-42 (118)
2 d2gh1a1 c.66.1.49 (A:13-293) M 26.8 15 0.0011 31.1 2.6 91 50-150 99-189 (281)
3 d1oqya2 a.5.2.1 (A:317-360) DN 24.6 5.7 0.00041 26.6 -0.6 26 135-160 1-30 (44)
4 d1f54a_ a.39.1.5 (A:) Calmodul 23.4 41 0.003 22.7 4.0 18 134-151 27-44 (77)
5 d2fr5a1 c.97.1.1 (A:11-146) mo 22.9 27 0.0019 27.4 3.2 98 80-186 28-134 (136)
6 d1wgla_ a.5.2.4 (A:) Toll-inte 22.4 8.8 0.00064 27.0 0.0 49 165-218 10-58 (59)
7 d1jjcb2 a.6.1.1 (B:400-474) Do 21.9 24 0.0018 24.9 2.4 23 126-149 13-35 (75)
8 d1uwza_ c.97.1.1 (A:) mono-dom 21.6 40 0.0029 26.1 4.0 40 141-184 91-130 (130)
9 d2g7ja1 d.198.5.1 (A:1-112) Pu 21.4 20 0.0015 27.8 2.0 18 134-151 3-20 (112)
10 d1mn3a_ a.5.2.4 (A:) Vacuolar 20.1 11 0.00078 26.1 0.1 15 165-179 13-27 (54)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=48.23 E-value=9.6 Score=30.12 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEE
Q 018623 131 RCPLTPEEVGLMLRALGFGSDVHLYIA 157 (353)
Q Consensus 131 ~CPLtPeEvgl~LrAlGf~~~T~IYlA 157 (353)
+|||||||+...|+.|=-+.+.. ||.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~~-~i~ 42 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNKL-FIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCEE-EEE
T ss_pred CCCCCHHHHHHHHHHhcCCccee-EEE
Confidence 79999999999999997766654 554
No 2
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=26.84 E-value=15 Score=31.10 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=53.6
Q ss_pred hcccccccchhHHHHHHHHHHHHHhccCCeEEEEeecchhhhhhhccCCCCChhHHHHHHHHHHHhhhhcCCCchhhhcc
Q 018623 50 VNYHALKFTDPIRHIGKMLVERMRLKTKHFIALHLRFEPDMLAFSGCYYGGGDEERTVLGALRKRWKSLHASNPDKVRRH 129 (353)
Q Consensus 50 vnf~ALrF~p~I~~lg~~LV~Rlr~~~~pfiALHLR~E~DMlAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~ 129 (353)
++.++|...++.+.+-+++.+.|+. +|.++....-+..++..+ ...+....+...+...++.|. ...+..
T Consensus 99 ~~~~~l~~~~d~~~~l~~~~~~Lkp-gG~lii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 168 (281)
T d2gh1a1 99 ICHAFLLHMTTPETMLQKMIHSVKK-GGKIICFEPHWISNMASY--LLDGEKQSEFIQLGVLQKLFE-------SDTQRN 168 (281)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEE-EEEEEEEECCHHHHHTSE--EETTSCHHHHCCHHHHHHHHH-------HHHHTT
T ss_pred EEehhhhcCCCHHHHHHHHHHHcCc-CcEEEEEECCccccchhh--ccCchhhhhhhhHHHHHHHHH-------HHHHHc
Confidence 3446666667777777777777766 567777665555555544 223332222222222222221 123456
Q ss_pred CCCCCCHHHHHHHHHHhCCCC
Q 018623 130 GRCPLTPEEVGLMLRALGFGS 150 (353)
Q Consensus 130 G~CPLtPeEvgl~LrAlGf~~ 150 (353)
|..|....++..+|+..||.+
T Consensus 169 ~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 169 GKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp CCCTTGGGTHHHHHHHTTCEE
T ss_pred CCCCCHHHHHHHHHHHcCCeE
Confidence 777777788889999999975
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.60 E-value=5.7 Score=26.65 Aligned_cols=26 Identities=38% Similarity=0.632 Sum_probs=18.5
Q ss_pred CHHHHHH--HHHHhCCCCcc--eEEEEece
Q 018623 135 TPEEVGL--MLRALGFGSDV--HLYIASGE 160 (353)
Q Consensus 135 tPeEvgl--~LrAlGf~~~T--~IYlA~ge 160 (353)
||+|..- =|.+|||+++. .+|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 5566553 47799999987 46777655
No 4
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.35 E-value=41 Score=22.70 Aligned_cols=18 Identities=22% Similarity=0.623 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 018623 134 LTPEEVGLMLRALGFGSD 151 (353)
Q Consensus 134 LtPeEvgl~LrAlGf~~~ 151 (353)
++++|+..+|+.+|+.-+
T Consensus 27 I~~~el~~~l~~~g~~~t 44 (77)
T d1f54a_ 27 ISSSELATVMRSLGLSPS 44 (77)
T ss_dssp EEHHHHHHHHHHHTCCCC
T ss_pred EChHHHHHHHHHhCCCCC
Confidence 677777777777776643
No 5
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.90 E-value=27 Score=27.41 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=55.8
Q ss_pred EEEEeecchhhhhhhccCCC------CChhHHHHHHHHHHH--hhhhcCCCchhhhccCCCCCCHHHH-HHHHHHhCCCC
Q 018623 80 IALHLRFEPDMLAFSGCYYG------GGDEERTVLGALRKR--WKSLHASNPDKVRRHGRCPLTPEEV-GLMLRALGFGS 150 (353)
Q Consensus 80 iALHLR~E~DMlAfsgC~~g------~~~~E~~eL~~~R~~--wk~~~~~~~~~~R~~G~CPLtPeEv-gl~LrAlGf~~ 150 (353)
|+-=++.+ |=-.|+||.-- +.-+|+-.|.++-.. .+...++... ...+. +++|=-. --+|..+ ..
T Consensus 28 VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~~~~~~~~~~--~~~~~-~~~PCG~CRQ~l~E~--~~ 101 (136)
T d2fr5a1 28 VGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISS--DLQEE-FISPCGACRQVMREF--GT 101 (136)
T ss_dssp EEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEE--SCSSS-CCCCCHHHHHHHHHT--CS
T ss_pred EEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCccEEEEEeec--ccCCC-CCCcchhhhHHHHhh--CC
Confidence 65666765 66667777532 224588887766531 1111110000 00110 2233111 2456664 57
Q ss_pred cceEEEEeceeccccccccchHhhCCCcccccccCC
Q 018623 151 DVHLYIASGEVYGGRETLAPLKALFPNLHSKETLAS 186 (353)
Q Consensus 151 ~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L~s 186 (353)
++.||+...+ |+.....|+++.|.-++++.|-.
T Consensus 102 ~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~~ 134 (136)
T d2fr5a1 102 DWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQK 134 (136)
T ss_dssp SCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGTC
T ss_pred CceEEEECCC---CCEEEeEHHHhCcCCCChHHhCc
Confidence 8899998776 66667789999999999988843
No 6
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.41 E-value=8.8 Score=26.98 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=32.9
Q ss_pred cccccchHhhCCCcccccccCCccccCcCCCchhhhhhhhhhhhcCCceeeeCC
Q 018623 165 RETLAPLKALFPNLHSKETLASKYELEPFSSFSARMAALDFIVCDESDVFVTNN 218 (353)
Q Consensus 165 ~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDvFV~t~ 218 (353)
++.+.-|++|||++-. +.|- .-|.. +..+..+|+|=..-+.-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~D~-~vI~--~VL~a--~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQ-EVIR--SVLEA--QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSCH-HHHH--HHHTT--TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCCH-HHHH--HHHHH--cCCCHHHHHHHHHhcCCCCcCCCC
Confidence 4678899999999842 2221 11222 245788999988888888777654
No 7
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=21.86 E-value=24 Score=24.89 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.2
Q ss_pred hhccCCCCCCHHHHHHHHHHhCCC
Q 018623 126 VRRHGRCPLTPEEVGLMLRALGFG 149 (353)
Q Consensus 126 ~R~~G~CPLtPeEvgl~LrAlGf~ 149 (353)
.+..|.. ++++|+..+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 3456655 9999999999999996
No 8
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=21.58 E-value=40 Score=26.08 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=30.1
Q ss_pred HHHHHhCCCCcceEEEEeceeccccccccchHhhCCCccccccc
Q 018623 141 LMLRALGFGSDVHLYIASGEVYGGRETLAPLKALFPNLHSKETL 184 (353)
Q Consensus 141 l~LrAlGf~~~T~IYlA~geiyGg~~~l~pL~~~FPnl~tKe~L 184 (353)
-+|..++ +.++.||+...+ |+-...+|+++.|.=++.++|
T Consensus 91 Q~l~E~~-~~~~~i~l~~~~---g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 91 QVISELC-TKDVIVVLTNLQ---GQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp HHHHHHS-CTTCEEEEECSS---SCEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHHhC-CCCcEEEEECCC---CCEEEEEHHHhCcCCCCcccC
Confidence 4566664 468999999887 444445899999999988876
No 9
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=21.44 E-value=20 Score=27.76 Aligned_cols=18 Identities=44% Similarity=0.741 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 018623 134 LTPEEVGLMLRALGFGSD 151 (353)
Q Consensus 134 LtPeEvgl~LrAlGf~~~ 151 (353)
|-|.||+.+|...||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999765
No 10
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.10 E-value=11 Score=26.07 Aligned_cols=15 Identities=33% Similarity=0.882 Sum_probs=12.1
Q ss_pred cccccchHhhCCCcc
Q 018623 165 RETLAPLKALFPNLH 179 (353)
Q Consensus 165 ~~~l~pL~~~FPnl~ 179 (353)
+..++-|++|||++-
T Consensus 13 ~e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHCCCCC
Confidence 356788999999983
Done!