BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018626
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L6Y|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 39
Score = 31.6 bits (70), Expect = 0.72, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254
R C +CG + TP RR G LCNACGL
Sbjct: 3 RECVNCGATA--TPLWRRDRTG-HYLCNACGL 31
>pdb|4HC7|A Chain A, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC7|B Chain B, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC9|A Chain A, Dna Binding By Gata Transcription Factor-Complex 3
pdb|4HCA|A Chain A, Dna Binding By Gata Transcription Factor-Complex 1
Length = 115
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254
R C +CG + +TP RR G LCNACGL
Sbjct: 6 RECVNCGAT--STPLWRRDGTG-HYLCNACGL 34
>pdb|1GNF|A Chain A, Solution Structure Of The N-Terminal Zinc Finger Of Murine
Gata-1, Nmr, 25 Structures
Length = 46
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254
R C +CG + TP RR G LCNACGL
Sbjct: 5 RECVNCGATA--TPLWRRDRTG-HYLCNACGL 33
>pdb|1Y0J|A Chain A, Zinc Fingers As Protein Recognition Motifs: Structural
Basis For The Gata-1FRIEND OF GATA INTERACTION
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254
R C +CG + TP RR G LCNACGL
Sbjct: 5 RECVNCGATA--TPLWRRDRTG-HYLCNACGL 33
>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|J Chain J, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|K Chain K, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|L Chain L, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|M Chain M, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|N Chain N, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|O Chain O, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|P Chain P, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUT|I Chain I, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|J Chain J, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|K Chain K, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|L Chain L, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|M Chain M, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|N Chain N, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|O Chain O, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|P Chain P, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|I Chain I, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|J Chain J, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|K Chain K, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|L Chain L, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|M Chain M, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|N Chain N, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|O Chain O, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|P Chain P, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
Length = 43
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 225 CQHCGVSENNTPAMRRGPAGPRTLCNACGL 254
C +C TP RR P G + LCNACGL
Sbjct: 4 CTNCFT--QTTPLWRRNPEG-QPLCNACGL 30
>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding
Domain Of Area Complexed To A 13 Bp Dna Containing A
Tgata Site, 34 Structures
pdb|6GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding
Domain Of Area Complexed To A 13 Bp Dna Containing A
Tgata Site, Regularized Mean Structure
Length = 66
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 225 CQHCGVSENNTPAMRRGPAGPRTLCNACGL 254
C +C TP RR P G + LCNACGL
Sbjct: 12 CTNCFT--QTTPVWRRNPEG-QPLCNACGL 38
>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain
Of Area Complexed To A 13bp Dna Containing A Cgata Site,
Regularized Mean Structure
pdb|5GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain
Of Area Complexed To A 13bp Dna Containing A Cgata Site,
35 Structures
Length = 66
Score = 28.1 bits (61), Expect = 6.8, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 225 CQHCGVSENNTPAMRRGPAGPRTLCNACGL 254
C +C TP RR P G + LCNACGL
Sbjct: 12 CTNCFT--QTTPLWRRNPEG-QPLCNACGL 38
>pdb|2QQP|A Chain A, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|C Chain C, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|E Chain E, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|G Chain G, Crystal Structure Of Authentic Providence Virus
Length = 556
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 265 VKPSIMEGEFSGNQDELGTPEDPAKAVNQGSDNPS----------IDPDEEDMHGAAEDL 314
+KP ++ GE GT + P + S +PS +DP G A
Sbjct: 44 LKPQLLPGESVAPSGGRGTMDPPVHEICAQSIDPSEGAVGWFYKYMDPAGAVESGKALGE 103
Query: 315 TNSLPMGLVHSSADDDEQEPLVELANPSDTDIDIP 349
+ +P GL+ S D EQ P+V + P+ ++ D+P
Sbjct: 104 FSKVPDGLLRYSVDA-EQRPIVTIECPTVSESDLP 137
>pdb|3CAO|A Chain A, Oxidised Structure Of The Acidic Cytochrome C3 From
Desulfovibrio Africanus
pdb|3CAR|A Chain A, Reduced Structure Of The Acidic Cytochrome C3 From
Desulfovibrio Africanus
Length = 103
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 13/52 (25%)
Query: 249 CNACGLMWANKETPMDVKPSIMEGEFSGNQDELGTPEDPAKAVNQGSDNPSI 300
CNAC +W N G + ++D +GTP A+ Q D P +
Sbjct: 36 CNACHHVWVN-------------GVLAEDEDSVGTPCSDCHALEQDGDTPGL 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,664,988
Number of Sequences: 62578
Number of extensions: 399383
Number of successful extensions: 643
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 17
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)