Query 018626
Match_columns 353
No_of_seqs 305 out of 805
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vut_I AREA, nitrogen regulato 99.6 2.7E-16 9.2E-21 111.8 3.8 41 223-266 2-42 (43)
2 1gnf_A Transcription factor GA 99.6 6.4E-16 2.2E-20 111.4 4.6 42 222-266 4-45 (46)
3 3dfx_A Trans-acting T-cell-spe 99.5 2.4E-15 8.2E-20 114.9 4.0 42 222-266 7-48 (63)
4 4gat_A Nitrogen regulatory pro 99.5 6.5E-15 2.2E-19 113.5 5.0 43 222-267 9-51 (66)
5 2kae_A GATA-type transcription 99.5 1.6E-14 5.4E-19 112.8 3.4 44 222-267 8-51 (71)
6 4hc9_A Trans-acting T-cell-spe 99.3 1.7E-12 5.7E-17 109.6 3.5 43 222-267 59-101 (115)
7 4hc9_A Trans-acting T-cell-spe 99.1 3.3E-11 1.1E-15 101.7 5.2 43 222-267 5-47 (115)
8 3ogl_Q JAZ1 incomplete degron 95.5 0.0068 2.3E-07 36.8 2.0 18 151-168 4-21 (21)
9 3ogk_Q JAZ1 incomplete degron 95.5 0.0043 1.5E-07 38.1 1.1 19 153-171 1-19 (22)
10 1dl6_A Transcription factor II 43.0 4.9 0.00017 29.4 -0.1 32 223-259 12-43 (58)
11 1pft_A TFIIB, PFTFIIBN; N-term 42.6 4.2 0.00014 28.3 -0.5 34 222-260 5-38 (50)
12 2yrk_A Zinc finger homeobox pr 38.8 6 0.00021 29.2 -0.2 22 240-261 7-28 (55)
13 3cw2_K Translation initiation 35.5 15 0.0005 31.6 1.7 30 223-255 104-133 (139)
14 2j9u_B VPS36, vacuolar protein 33.7 8.2 0.00028 30.2 -0.2 34 221-255 16-49 (76)
15 2ds5_A CLPX, ATP-dependent CLP 30.9 26 0.00089 25.2 2.1 31 223-255 12-42 (51)
16 1ovx_A ATP-dependent CLP prote 30.1 26 0.0009 26.7 2.1 33 223-257 19-51 (67)
17 3h0g_L DNA-directed RNA polyme 29.9 15 0.0005 27.7 0.7 39 218-263 17-55 (63)
18 2d74_B Translation initiation 28.8 17 0.00059 31.5 1.0 30 223-255 105-134 (148)
19 1nee_A EIF-2-beta, probable tr 26.8 15 0.00053 31.4 0.4 29 223-254 103-131 (138)
20 2ctu_A Zinc finger protein 483 25.1 27 0.00093 23.7 1.4 41 222-265 18-58 (73)
21 2owa_A Arfgap-like finger doma 23.9 54 0.0019 27.9 3.3 37 222-262 36-72 (138)
22 1k81_A EIF-2-beta, probable tr 23.9 11 0.00037 25.1 -0.9 30 224-256 2-31 (36)
23 2b0o_E UPLC1; arfgap, structur 22.2 36 0.0012 31.0 2.0 36 222-261 42-77 (301)
24 2lcq_A Putative toxin VAPC6; P 22.0 13 0.00045 31.6 -1.0 31 222-260 132-162 (165)
25 3k7a_M Transcription initiatio 22.0 27 0.00092 33.4 1.1 33 223-259 22-55 (345)
26 2k1p_A Zinc finger RAN-binding 21.9 27 0.00093 22.6 0.7 23 222-254 6-28 (33)
27 2crw_A ARF GAP 3, ADP-ribosyla 21.7 61 0.0021 28.0 3.2 37 222-262 29-65 (149)
28 2iqj_A Stromal membrane-associ 21.6 59 0.002 27.5 3.0 37 222-262 27-63 (134)
29 1w7p_D VPS36P, YLR417W; ESCRT- 21.5 20 0.00067 37.4 0.0 37 220-257 115-151 (566)
30 1qyp_A RNA polymerase II; tran 21.2 12 0.0004 26.8 -1.3 36 222-258 15-55 (57)
31 2crr_A Stromal membrane-associ 20.6 87 0.003 26.6 3.9 37 222-262 29-65 (141)
32 3cng_A Nudix hydrolase; struct 20.5 29 0.001 29.4 0.9 31 222-254 3-33 (189)
No 1
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.61 E-value=2.7e-16 Score=111.83 Aligned_cols=41 Identities=37% Similarity=0.731 Sum_probs=37.7
Q ss_pred ccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 018626 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVK 266 (353)
Q Consensus 223 ~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~ 266 (353)
..|++|+++ .||+||+||+|+ +|||||||+|++++++|++.
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 479999996 599999999997 99999999999999998874
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.59 E-value=6.4e-16 Score=111.35 Aligned_cols=42 Identities=38% Similarity=0.739 Sum_probs=38.5
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVK 266 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~ 266 (353)
...|++|+++ .||+||+||.|+ +|||||||+|++++++|++.
T Consensus 4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 45 (46)
T 1gnf_A 4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLI 45 (46)
T ss_dssp SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCC
T ss_pred CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCC
Confidence 4679999997 599999999996 99999999999999999875
No 3
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.54 E-value=2.4e-15 Score=114.91 Aligned_cols=42 Identities=29% Similarity=0.628 Sum_probs=38.4
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVK 266 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~ 266 (353)
...|++|+++ .||+||+||+|+ +|||||||+|++++..|++.
T Consensus 7 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~ 48 (63)
T 3dfx_A 7 GTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLT 48 (63)
T ss_dssp TCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGG
T ss_pred CCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcC
Confidence 4679999997 599999999997 99999999999999988775
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.52 E-value=6.5e-15 Score=113.46 Aligned_cols=43 Identities=35% Similarity=0.665 Sum_probs=39.0
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKP 267 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~~ 267 (353)
...|++|+++ .||+||+||.|. +|||||||+|+++++.|++..
T Consensus 9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~ 51 (66)
T 4gat_A 9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL 51 (66)
T ss_dssp SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGG
T ss_pred CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhh
Confidence 4689999996 599999999996 999999999999999988754
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.47 E-value=1.6e-14 Score=112.77 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=37.6
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKP 267 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~~ 267 (353)
...|+||+++ .||+||+||.+..+|||||||+|+++++.|++..
T Consensus 8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~ 51 (71)
T 2kae_A 8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTA 51 (71)
T ss_dssp CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHH
T ss_pred CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCccc
Confidence 4689999997 5999999655545999999999999999988754
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.26 E-value=1.7e-12 Score=109.62 Aligned_cols=43 Identities=28% Similarity=0.598 Sum_probs=38.9
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKP 267 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~~ 267 (353)
...|++|+++ .||+||+||.| ++|||||||||++++..|++..
T Consensus 59 ~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~ 101 (115)
T 4hc9_A 59 GTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTM 101 (115)
T ss_dssp TCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGG
T ss_pred cccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccc
Confidence 3579999997 49999999999 8999999999999999988753
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.13 E-value=3.3e-11 Score=101.69 Aligned_cols=43 Identities=37% Similarity=0.708 Sum_probs=38.3
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKP 267 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~~ 267 (353)
.+.|.+|+++ .||+||+||.| .+|||||||+|+.++..+++.+
T Consensus 5 ~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~K 47 (115)
T 4hc9_A 5 GRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIK 47 (115)
T ss_dssp -CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSS
T ss_pred CCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhccccccccc
Confidence 4689999996 59999999999 7999999999999999988753
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=95.48 E-value=0.0068 Score=36.81 Aligned_cols=18 Identities=61% Similarity=0.706 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhccc.....
Q 018626 151 SRRIASLVRFREKRKERC..... 168 (353)
Q Consensus 151 s~R~asl~RfREKRK~R~..... 168 (353)
..|.+||.||.||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 468999999999999973
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=95.47 E-value=0.0043 Score=38.11 Aligned_cols=19 Identities=63% Similarity=0.737 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhcccccc
Q 018626 153 RIASLVRFREKRKERCFDK 171 (353)
Q Consensus 153 R~asl~RfREKRK~R~f~K 171 (353)
|.+||.||.||||+|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5789999999999987654
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=43.03 E-value=4.9 Score=29.37 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=24.5
Q ss_pred ccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhc
Q 018626 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (353)
Q Consensus 223 ~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~ 259 (353)
..|..|+. ++...+--.| ...|..||+-+..+
T Consensus 12 ~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 12 VTCPNHPD----AILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CSBTTBSS----SCCEECSSSC-CEECTTTCCEECCS
T ss_pred ccCcCCCC----CceeEeCCCC-eEEeCCCCCEEecc
Confidence 47999986 4466665566 79999999988765
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=42.63 E-value=4.2 Score=28.32 Aligned_cols=34 Identities=18% Similarity=0.510 Sum_probs=22.8
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKE 260 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~ 260 (353)
...|..|+. +++..+--.| ...|..||+-|..+.
T Consensus 5 ~~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~~ 38 (50)
T 1pft_A 5 QKVCPACES----AELIYDPERG-EIVCAKCGYVIEENI 38 (50)
T ss_dssp CCSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCCC
T ss_pred cEeCcCCCC----cceEEcCCCC-eEECcccCCcccccc
Confidence 357999975 3444444344 789999999876543
No 12
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=38.83 E-value=6 Score=29.19 Aligned_cols=22 Identities=23% Similarity=0.723 Sum_probs=14.3
Q ss_pred cCCCCCcccchHHHHHHHhcCC
Q 018626 240 RGPAGPRTLCNACGLMWANKET 261 (353)
Q Consensus 240 ~GP~G~~~LCNACGl~~~~~~~ 261 (353)
.+|+||++-|.-||..|-.+-.
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r~s 28 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSARLS 28 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSSSC
T ss_pred CCCCCCCccccccCcccccccc
Confidence 3567777777777776665533
No 13
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=35.49 E-value=15 Score=31.56 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=19.9
Q ss_pred ccCcccCCCCCCCcccccCCCCCcccchHHHHH
Q 018626 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (353)
Q Consensus 223 ~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (353)
-.|..|+.+. |-+-+++-. --.-|+|||-.
T Consensus 104 VlC~~C~sPd--T~l~k~~r~-~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLD--TILKKEKKS-WYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSC--CCSCSSCST-TTSSCCC----
T ss_pred eECCCCCCcC--cEEEEeCCe-EEEEecCCCCC
Confidence 5799999985 888887522 24789999964
No 14
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=33.69 E-value=8.2 Score=30.23 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=25.0
Q ss_pred ccccCcccCCCCCCCcccccCCCCCcccchHHHHH
Q 018626 221 VVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (353)
Q Consensus 221 ~~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (353)
..|.|..|... ..+|.+.+--..+..-|-+||++
T Consensus 16 ~tWVCpICsfs-N~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 16 STWVCPICMVS-NETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EEEECTTTCCE-EEESSCCCTTCSSCCBCTTTCCB
T ss_pred cceECcccccc-CcCccccCCCCCCCCcccccCcc
Confidence 37999999875 45676665433666789999984
No 15
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=30.91 E-value=26 Score=25.17 Aligned_cols=31 Identities=26% Similarity=0.674 Sum_probs=21.4
Q ss_pred ccCcccCCCCCCCcccccCCCCCcccchHHHHH
Q 018626 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (353)
Q Consensus 223 ~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (353)
.+|+-||.+...+...=.|| | ...|+.|-..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 57999998754444444565 3 4899999654
No 16
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=30.09 E-value=26 Score=26.66 Aligned_cols=33 Identities=24% Similarity=0.621 Sum_probs=22.5
Q ss_pred ccCcccCCCCCCCcccccCCCCCcccchHHHHHHH
Q 018626 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWA 257 (353)
Q Consensus 223 ~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~ 257 (353)
.+|+-||.+...+...=.|| | ...|+.|-..-.
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c~ 51 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCN 51 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHHH
Confidence 57999998754444444565 3 489999975543
No 17
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.86 E-value=15 Score=27.72 Aligned_cols=39 Identities=28% Similarity=0.530 Sum_probs=25.0
Q ss_pred CCCccccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCC
Q 018626 218 PETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPM 263 (353)
Q Consensus 218 ~e~~~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~ 263 (353)
++...-.|..||... . . + .+...-|..||-+...|.+.+
T Consensus 17 ~~~v~Y~C~~Cg~~~--~-l-~---~~~~iRC~~CG~RILyK~Rt~ 55 (63)
T 3h0g_L 17 PATMIYLCADCGARN--T-I-Q---AKEVIRCRECGHRVMYKMRTK 55 (63)
T ss_dssp --CCCCBCSSSCCBC--C-C-C---SSSCCCCSSSCCCCCBCCCCC
T ss_pred CCCeEEECCCCCCee--e-c-C---CCCceECCCCCcEEEEEecCC
Confidence 334568999999853 2 1 1 234578999998877665543
No 18
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=28.77 E-value=17 Score=31.51 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=21.9
Q ss_pred ccCcccCCCCCCCcccccCCCCCcccchHHHHH
Q 018626 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (353)
Q Consensus 223 ~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~ 255 (353)
-.|..|+.+. |-+-+++-. --.-|+|||-.
T Consensus 105 VlC~~C~sPd--T~L~k~~r~-~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPD--TKIIKRDRF-HFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTT--CCCCBSSSS-BCCCCSSSCCC
T ss_pred EECCCCCCcC--cEEEEeCCE-EEEEecCCCCC
Confidence 4699999975 888876522 24689999863
No 19
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=26.85 E-value=15 Score=31.39 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=21.4
Q ss_pred ccCcccCCCCCCCcccccCCCCCcccchHHHH
Q 018626 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (353)
Q Consensus 223 ~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl 254 (353)
-.|..|+.+. |-+-+++-. --.-|+|||-
T Consensus 103 VlC~~C~sPd--T~l~k~~r~-~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPD--TRIIREGRI-SLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCS--SCCEEETTT-TEEECSTTSC
T ss_pred EECCCCCCcC--cEEEEcCCe-EEEEccCCCC
Confidence 3699999985 888886522 2468999985
No 20
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.08 E-value=27 Score=23.73 Aligned_cols=41 Identities=15% Similarity=0.391 Sum_probs=28.0
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDV 265 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~ 265 (353)
...|..|+..-.....++. .....|..||..|.....+...
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~H 58 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNKD 58 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHHH
Confidence 5789999875333333444 4468999999998877666443
No 21
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=23.95 E-value=54 Score=27.92 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=31.1
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETP 262 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~ 262 (353)
...|..|+.. -|.|=.=..| -.+|-.|.-..+.-++.
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 4689999986 6999999999 78999998887776654
No 22
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=23.91 E-value=11 Score=25.15 Aligned_cols=30 Identities=30% Similarity=0.728 Sum_probs=20.1
Q ss_pred cCcccCCCCCCCcccccCCCCCcccchHHHHHH
Q 018626 224 RCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (353)
Q Consensus 224 ~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~ 256 (353)
.|..|+-.. |-+-++.-.- -.-|+|||-..
T Consensus 2 lC~~C~~pe--T~l~~~~~~~-~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPD--TKIIKEGRVH-LLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCE--EEEEEETTEE-EEEEETTTEEE
T ss_pred CCcCCCCCC--cEEEEeCCcE-EEEhhcCCCcc
Confidence 488999875 7777754111 24599999653
No 23
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=22.16 E-value=36 Score=31.01 Aligned_cols=36 Identities=19% Similarity=0.424 Sum_probs=28.7
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKET 261 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~ 261 (353)
...|..|+.. -|.|-.-..| ..+|-.|--.-+.-++
T Consensus 42 n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 42 NSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 4689999986 6999999999 7999999655555443
No 24
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.03 E-value=13 Score=31.56 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=21.4
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKE 260 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~ 260 (353)
..+|..||.. ...+ .+...|-.||-..++..
T Consensus 132 ~y~C~~Cg~~---~~~~-----~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 132 RYVCIGCGRK---FSTL-----PPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp CEEESSSCCE---ESSC-----CGGGBCTTTCCBEEECC
T ss_pred EEECCCCCCc---ccCC-----CCCCcCCCCCCcceeCC
Confidence 4789999974 3322 44579999998755443
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=22.00 E-value=27 Score=33.37 Aligned_cols=33 Identities=33% Similarity=0.784 Sum_probs=21.7
Q ss_pred ccCcccCCCCCCCc-ccccCCCCCcccchHHHHHHHhc
Q 018626 223 RRCQHCGVSENNTP-AMRRGPAGPRTLCNACGLMWANK 259 (353)
Q Consensus 223 ~~C~~C~~~~~~TP-~WR~GP~G~~~LCNACGl~~~~~ 259 (353)
..|.+|+.. +| ...+--.| ...|..||+-+.-+
T Consensus 22 ~~Cp~Cg~~---~~~iv~D~~~G-~~vC~~CG~Vl~e~ 55 (345)
T 3k7a_M 22 LTCPECKVY---PPKIVERFSEG-DVVCALCGLVLSDK 55 (345)
T ss_dssp CCCSTTCCS---CCCCCCCSSSC-SCCCSSSCCCCCCC
T ss_pred CcCcCCCCC---CCceEEECCCC-CEecCCCCeEcccc
Confidence 469999874 23 44444455 78899999876543
No 26
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=21.85 E-value=27 Score=22.63 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=16.9
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHH
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl 254 (353)
.|.|..|+.. ...|| .-|+.||.
T Consensus 6 DW~C~~C~~~---Nfa~R-------~~C~~C~~ 28 (33)
T 2k1p_A 6 DWQCKTCSNV---NWARR-------SECNMCNT 28 (33)
T ss_dssp SCBCSSSCCB---CCTTC-------SBCSSSCC
T ss_pred CcccCCCCCc---ccccc-------ccccccCC
Confidence 6999999874 44444 67888864
No 27
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.72 E-value=61 Score=28.01 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=31.1
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETP 262 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~ 262 (353)
...|..|+.. -|.|=.=..| -.+|-.|--..+.-++.
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 4689999986 7999999999 78999998877776654
No 28
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=21.58 E-value=59 Score=27.47 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=31.1
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETP 262 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~ 262 (353)
...|..|+.. -|.|=.=..| -.+|-.|.-..+.-++.
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 4689999986 6999999999 78999998887776654
No 29
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=21.54 E-value=20 Score=37.35 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=0.0
Q ss_pred CccccCcccCCCCCCCcccccCCCCCcccchHHHHHHH
Q 018626 220 TVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWA 257 (353)
Q Consensus 220 ~~~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~ 257 (353)
...|.|..|+.. ..+|...+--..+..-|-+||+.-.
T Consensus 115 ~~tWvC~ICsfs-N~~~~~f~~~~~~~p~C~~CGi~p~ 151 (566)
T 1w7p_D 115 VSTWVCPICMVS-NETQGEFTKDTLPTPICINCGVPAD 151 (566)
T ss_dssp --------------------------------------
T ss_pred ccceeccccccC-CCCCCCCCcccCCCCcccccCCCCc
Confidence 447999999986 3556554422245568999999743
No 30
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=21.21 E-value=12 Score=26.82 Aligned_cols=36 Identities=25% Similarity=0.562 Sum_probs=24.3
Q ss_pred cccCcccCCCCCC---CcccccCCCC--CcccchHHHHHHHh
Q 018626 222 VRRCQHCGVSENN---TPAMRRGPAG--PRTLCNACGLMWAN 258 (353)
Q Consensus 222 ~~~C~~C~~~~~~---TP~WR~GP~G--~~~LCNACGl~~~~ 258 (353)
...|..||-.. . .-+||....+ .-..|-.||..|+.
T Consensus 15 ~~~Cp~Cg~~~-~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDT-AYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSE-EEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCE-EEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 46799998742 2 2367766544 23689999988864
No 31
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.62 E-value=87 Score=26.62 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=30.7
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCC
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETP 262 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~ 262 (353)
...|..|+.. -|.|=.=..| -.||-.|.-..+.-++.
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (141)
T 2crr_A 29 NKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGVH 65 (141)
T ss_dssp GSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCCC
Confidence 4689999986 6999998889 78999998877776654
No 32
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=20.45 E-value=29 Score=29.37 Aligned_cols=31 Identities=26% Similarity=0.644 Sum_probs=23.2
Q ss_pred cccCcccCCCCCCCcccccCCCCCcccchHHHH
Q 018626 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (353)
Q Consensus 222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl 254 (353)
.+.|..||..- +.....|..+....|-.||.
T Consensus 3 ~~~C~~CG~~~--~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGEV--ILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCBC--EEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCcc--ccccccCCCCcceECCCCCC
Confidence 46899999853 45555677777789999993
Done!