Query 018636
Match_columns 352
No_of_seqs 341 out of 2906
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 02:45:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 1.4E-34 3E-39 237.4 17.7 203 20-226 1-203 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 1.1E-32 2.4E-37 224.4 22.0 195 20-220 1-195 (196)
3 COG1159 Era GTPase [General fu 99.9 1.7E-24 3.6E-29 177.7 16.5 178 19-222 6-184 (298)
4 TIGR00991 3a0901s02IAP34 GTP-b 99.9 5.2E-21 1.1E-25 161.0 17.2 156 17-177 36-192 (313)
5 TIGR00993 3a0901s04IAP86 chlor 99.9 9.2E-21 2E-25 171.6 19.2 162 19-184 118-287 (763)
6 TIGR00436 era GTP-binding prot 99.8 3E-20 6.4E-25 158.7 15.7 173 21-220 2-174 (270)
7 COG1160 Predicted GTPases [Gen 99.8 1.1E-19 2.4E-24 157.8 15.4 161 20-208 4-164 (444)
8 PF02421 FeoB_N: Ferrous iron 99.8 7.5E-20 1.6E-24 139.9 12.7 156 20-204 1-156 (156)
9 cd01853 Toc34_like Toc34-like 99.8 2.6E-19 5.6E-24 149.3 15.5 132 17-152 29-164 (249)
10 PRK00089 era GTPase Era; Revie 99.8 6.1E-19 1.3E-23 152.8 17.7 177 19-220 5-181 (292)
11 PRK15494 era GTPase Era; Provi 99.8 4.6E-19 1E-23 155.4 15.2 173 20-220 53-226 (339)
12 COG0218 Predicted GTPase [Gene 99.8 4.7E-18 1E-22 132.4 18.0 174 15-210 20-198 (200)
13 COG1160 Predicted GTPases [Gen 99.8 1.3E-18 2.8E-23 151.2 15.8 186 18-220 177-362 (444)
14 PRK12298 obgE GTPase CgtA; Rev 99.8 2.6E-17 5.6E-22 146.0 19.9 177 21-220 161-343 (390)
15 cd04171 SelB SelB subfamily. 99.8 3.3E-17 7.1E-22 129.8 17.1 160 21-206 2-163 (164)
16 PRK00093 GTP-binding protein D 99.8 9.9E-17 2.1E-21 146.9 21.3 174 18-210 172-345 (435)
17 PF01926 MMR_HSR1: 50S ribosom 99.8 2.1E-17 4.6E-22 122.8 13.6 116 21-146 1-116 (116)
18 cd04163 Era Era subfamily. Er 99.8 3.3E-17 7.1E-22 130.1 15.3 165 19-207 3-167 (168)
19 cd01898 Obg Obg subfamily. Th 99.8 3.4E-17 7.3E-22 130.6 15.2 164 21-207 2-169 (170)
20 cd01895 EngA2 EngA2 subfamily. 99.8 8.3E-17 1.8E-21 128.7 17.0 171 20-207 3-173 (174)
21 COG0486 ThdF Predicted GTPase 99.8 1.8E-16 3.9E-21 138.4 20.0 163 17-211 215-378 (454)
22 TIGR03594 GTPase_EngA ribosome 99.8 1.7E-16 3.6E-21 145.3 20.9 176 18-211 171-346 (429)
23 PRK00454 engB GTP-binding prot 99.7 3.1E-16 6.7E-21 128.1 19.6 171 17-210 22-195 (196)
24 cd01897 NOG NOG1 is a nucleola 99.7 1.2E-16 2.7E-21 127.1 16.7 163 20-208 1-167 (168)
25 PRK12299 obgE GTPase CgtA; Rev 99.7 4.7E-16 1E-20 135.4 20.2 167 21-210 160-329 (335)
26 cd01894 EngA1 EngA1 subfamily. 99.7 5.8E-17 1.3E-21 127.4 13.0 156 23-207 1-156 (157)
27 PRK03003 GTP-binding protein D 99.7 4.1E-16 8.9E-21 143.3 20.5 177 18-214 210-387 (472)
28 cd01888 eIF2_gamma eIF2-gamma 99.7 9.5E-17 2E-21 131.3 14.6 166 20-210 1-200 (203)
29 TIGR03598 GTPase_YsxC ribosome 99.7 1.5E-16 3.3E-21 127.7 15.6 159 17-197 16-178 (179)
30 TIGR03156 GTP_HflX GTP-binding 99.7 1.6E-16 3.4E-21 139.5 16.3 162 18-207 188-350 (351)
31 cd04164 trmE TrmE (MnmE, ThdF, 99.7 2E-16 4.3E-21 124.3 15.3 156 19-208 1-156 (157)
32 PF00009 GTP_EFTU: Elongation 99.7 5.2E-17 1.1E-21 131.4 11.9 167 19-209 3-187 (188)
33 cd01878 HflX HflX subfamily. 99.7 1.8E-16 4E-21 130.2 15.2 162 19-207 41-203 (204)
34 PRK03003 GTP-binding protein D 99.7 2.1E-16 4.6E-21 145.2 16.7 164 18-210 37-200 (472)
35 TIGR02729 Obg_CgtA Obg family 99.7 3.9E-16 8.5E-21 135.8 17.3 165 21-208 159-328 (329)
36 TIGR03594 GTPase_EngA ribosome 99.7 1.7E-16 3.6E-21 145.3 15.6 161 21-210 1-161 (429)
37 PRK12296 obgE GTPase CgtA; Rev 99.7 8.6E-16 1.9E-20 138.7 19.5 166 21-210 161-341 (500)
38 COG3596 Predicted GTPase [Gene 99.7 1E-16 2.2E-21 130.1 11.7 176 19-211 39-224 (296)
39 cd00881 GTP_translation_factor 99.7 4E-16 8.7E-21 126.6 15.3 164 21-208 1-186 (189)
40 PRK00093 GTP-binding protein D 99.7 4.3E-16 9.3E-21 142.7 17.0 158 20-206 2-159 (435)
41 PRK12297 obgE GTPase CgtA; Rev 99.7 1.2E-15 2.6E-20 136.1 19.2 165 21-211 160-329 (424)
42 cd04104 p47_IIGP_like p47 (47- 99.7 9.8E-16 2.1E-20 124.7 17.3 171 20-210 2-185 (197)
43 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.9E-16 4.2E-21 125.8 12.7 161 21-205 1-165 (167)
44 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 5.6E-16 1.2E-20 123.3 15.0 161 21-208 2-165 (168)
45 cd01864 Rab19 Rab19 subfamily. 99.7 2E-15 4.4E-20 119.7 18.0 158 19-206 3-163 (165)
46 cd04154 Arl2 Arl2 subfamily. 99.7 5.1E-16 1.1E-20 124.1 14.6 155 17-205 12-171 (173)
47 PRK04213 GTP-binding protein; 99.7 1.7E-15 3.6E-20 124.2 17.7 171 17-210 7-193 (201)
48 PRK09518 bifunctional cytidyla 99.7 2.1E-15 4.6E-20 145.1 20.8 174 18-212 449-624 (712)
49 cd01850 CDC_Septin CDC/Septin. 99.7 1.2E-15 2.5E-20 129.9 16.9 153 19-185 4-184 (276)
50 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.5E-15 3.4E-20 122.5 16.2 118 19-152 2-133 (195)
51 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.1E-15 2.3E-20 120.9 14.5 160 22-205 2-162 (164)
52 cd04155 Arl3 Arl3 subfamily. 99.7 5E-16 1.1E-20 124.2 12.8 159 18-206 13-172 (173)
53 cd04158 ARD1 ARD1 subfamily. 99.7 7.5E-16 1.6E-20 122.5 13.6 160 21-210 1-162 (169)
54 cd01889 SelB_euk SelB subfamil 99.7 1E-15 2.3E-20 124.3 14.5 168 20-209 1-186 (192)
55 cd04166 CysN_ATPS CysN_ATPS su 99.7 7.3E-16 1.6E-20 126.5 13.6 156 21-200 1-185 (208)
56 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2E-15 4.4E-20 119.2 15.8 155 20-207 2-160 (162)
57 PRK05291 trmE tRNA modificatio 99.7 2.4E-15 5.2E-20 136.8 18.2 158 18-210 214-371 (449)
58 cd01881 Obg_like The Obg-like 99.7 7.6E-16 1.7E-20 123.5 13.3 162 24-207 1-175 (176)
59 cd04149 Arf6 Arf6 subfamily. 99.7 8.7E-16 1.9E-20 121.9 13.3 155 19-205 9-166 (168)
60 cd04124 RabL2 RabL2 subfamily. 99.7 1.7E-15 3.6E-20 119.5 14.7 153 20-209 1-158 (161)
61 COG0370 FeoB Fe2+ transport sy 99.7 8.2E-15 1.8E-19 133.6 20.8 164 19-213 3-168 (653)
62 smart00177 ARF ARF-like small 99.7 1.8E-15 4E-20 120.9 14.8 159 19-208 13-173 (175)
63 cd01876 YihA_EngB The YihA (En 99.7 4.7E-15 1E-19 118.0 17.1 163 22-207 2-169 (170)
64 cd04120 Rab12 Rab12 subfamily. 99.7 4E-15 8.7E-20 120.9 16.8 157 21-208 2-162 (202)
65 cd04142 RRP22 RRP22 subfamily. 99.7 5.9E-15 1.3E-19 120.0 17.7 172 20-214 1-179 (198)
66 COG1084 Predicted GTPase [Gene 99.7 1.6E-15 3.5E-20 126.1 14.5 129 18-159 167-300 (346)
67 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.2E-15 2.5E-20 120.1 13.1 154 21-205 2-157 (159)
68 PRK09866 hypothetical protein; 99.7 2.4E-13 5.1E-18 123.7 29.4 121 69-206 230-350 (741)
69 cd04121 Rab40 Rab40 subfamily. 99.7 5.9E-15 1.3E-19 118.8 17.3 161 19-211 6-169 (189)
70 cd04151 Arl1 Arl1 subfamily. 99.7 1E-15 2.2E-20 120.5 12.5 155 21-206 1-157 (158)
71 cd01867 Rab8_Rab10_Rab13_like 99.7 5.3E-15 1.1E-19 117.5 16.6 158 20-208 4-164 (167)
72 cd01865 Rab3 Rab3 subfamily. 99.7 3.9E-15 8.4E-20 118.0 15.8 156 20-208 2-162 (165)
73 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 4.7E-15 1E-19 117.9 16.2 159 21-210 2-166 (170)
74 cd04159 Arl10_like Arl10-like 99.7 9.7E-16 2.1E-20 120.5 12.1 155 22-206 2-158 (159)
75 cd01868 Rab11_like Rab11-like. 99.7 1.1E-14 2.3E-19 115.5 18.1 157 20-207 4-163 (165)
76 smart00178 SAR Sar1p-like memb 99.7 8.1E-16 1.8E-20 124.0 11.7 166 17-206 15-182 (184)
77 cd01879 FeoB Ferrous iron tran 99.7 3.6E-15 7.8E-20 117.3 15.2 156 24-208 1-156 (158)
78 PTZ00133 ADP-ribosylation fact 99.7 2.4E-15 5.1E-20 120.9 14.3 160 18-209 16-178 (182)
79 cd01861 Rab6 Rab6 subfamily. 99.7 5.2E-15 1.1E-19 116.8 16.1 156 21-207 2-160 (161)
80 PLN00223 ADP-ribosylation fact 99.7 2.9E-15 6.3E-20 120.2 14.7 158 18-208 16-177 (181)
81 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 2.4E-15 5.1E-20 120.2 14.0 157 19-205 15-172 (174)
82 cd01866 Rab2 Rab2 subfamily. 99.7 7.7E-15 1.7E-19 116.6 16.9 159 20-208 5-165 (168)
83 COG5019 CDC3 Septin family pro 99.7 1.5E-13 3.2E-18 116.5 25.1 151 18-182 22-200 (373)
84 PRK10512 selenocysteinyl-tRNA- 99.7 3.7E-15 8E-20 139.8 17.1 165 21-210 2-167 (614)
85 PRK15467 ethanolamine utilizat 99.7 4.2E-16 9.1E-21 122.1 9.2 146 20-209 2-147 (158)
86 cd04119 RJL RJL (RabJ-Like) su 99.7 7.1E-15 1.5E-19 116.8 16.5 159 20-208 1-166 (168)
87 PRK11058 GTPase HflX; Provisio 99.7 4.6E-15 1E-19 133.3 16.8 164 20-209 198-362 (426)
88 cd04113 Rab4 Rab4 subfamily. 99.7 5.5E-15 1.2E-19 116.7 15.5 157 20-206 1-159 (161)
89 cd04157 Arl6 Arl6 subfamily. 99.7 1.6E-15 3.6E-20 119.8 12.5 158 21-205 1-160 (162)
90 cd01893 Miro1 Miro1 subfamily. 99.7 6.5E-15 1.4E-19 116.8 16.0 156 21-208 2-163 (166)
91 cd01860 Rab5_related Rab5-rela 99.7 8.3E-15 1.8E-19 115.9 16.5 157 20-208 2-162 (163)
92 cd04122 Rab14 Rab14 subfamily. 99.7 9.8E-15 2.1E-19 115.8 17.0 155 20-208 3-163 (166)
93 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.4E-15 3E-20 119.9 12.0 156 21-206 1-159 (160)
94 PRK09554 feoB ferrous iron tra 99.7 4.4E-14 9.6E-19 135.4 24.4 164 19-209 3-168 (772)
95 cd04132 Rho4_like Rho4-like su 99.7 6.4E-15 1.4E-19 119.3 16.2 161 20-209 1-167 (187)
96 PRK09518 bifunctional cytidyla 99.7 3.9E-15 8.4E-20 143.2 17.4 163 19-210 275-437 (712)
97 cd04134 Rho3 Rho3 subfamily. 99.7 4.7E-15 1E-19 120.1 15.3 165 20-210 1-175 (189)
98 COG0488 Uup ATPase components 99.7 1.5E-14 3.3E-19 132.3 20.1 143 2-163 14-198 (530)
99 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 9.5E-15 2E-19 116.4 16.6 158 20-209 3-164 (172)
100 smart00175 RAB Rab subfamily o 99.7 1.2E-14 2.6E-19 115.1 17.2 159 20-209 1-162 (164)
101 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.5E-14 3.3E-19 114.7 17.7 158 20-208 3-163 (166)
102 KOG1423 Ras-like GTPase ERA [C 99.7 2E-15 4.3E-20 123.8 12.6 197 18-221 71-282 (379)
103 PLN03071 GTP-binding nuclear p 99.7 1.1E-14 2.3E-19 120.5 17.4 159 17-210 11-173 (219)
104 cd04145 M_R_Ras_like M-Ras/R-R 99.7 5.1E-15 1.1E-19 117.2 14.8 158 19-208 2-163 (164)
105 cd04112 Rab26 Rab26 subfamily. 99.7 1.2E-14 2.6E-19 118.0 17.2 162 20-211 1-165 (191)
106 TIGR02528 EutP ethanolamine ut 99.7 1.1E-15 2.4E-20 118.0 10.6 139 21-204 2-140 (142)
107 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.2E-14 2.6E-19 116.1 16.7 160 20-206 2-172 (175)
108 cd00878 Arf_Arl Arf (ADP-ribos 99.6 3.3E-15 7.3E-20 117.5 13.3 155 21-205 1-156 (158)
109 cd04109 Rab28 Rab28 subfamily. 99.6 1.6E-14 3.6E-19 119.3 18.0 160 20-209 1-166 (215)
110 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 4.4E-15 9.6E-20 119.6 14.2 161 20-208 4-169 (183)
111 cd04127 Rab27A Rab27a subfamil 99.6 1.2E-14 2.6E-19 117.0 16.5 157 19-208 4-176 (180)
112 cd04136 Rap_like Rap-like subf 99.6 6.7E-15 1.4E-19 116.4 14.8 155 20-207 2-161 (163)
113 cd04144 Ras2 Ras2 subfamily. 99.6 6.1E-15 1.3E-19 119.6 14.7 158 21-209 1-163 (190)
114 cd04140 ARHI_like ARHI subfami 99.6 5.3E-15 1.1E-19 117.2 14.1 158 20-207 2-163 (165)
115 TIGR00475 selB selenocysteine- 99.6 1.2E-14 2.6E-19 136.0 18.4 164 21-210 2-167 (581)
116 cd00877 Ran Ran (Ras-related n 99.6 1.3E-14 2.8E-19 115.0 16.0 156 20-210 1-160 (166)
117 PLN03110 Rab GTPase; Provision 99.6 2.2E-14 4.7E-19 118.5 17.8 157 18-208 11-173 (216)
118 cd00154 Rab Rab family. Rab G 99.6 9.7E-15 2.1E-19 114.8 15.0 154 20-205 1-158 (159)
119 cd04106 Rab23_lke Rab23-like s 99.6 1.3E-14 2.9E-19 114.6 15.8 154 20-206 1-160 (162)
120 COG2262 HflX GTPases [General 99.6 6.9E-15 1.5E-19 126.3 14.9 166 18-210 191-357 (411)
121 cd04161 Arl2l1_Arl13_like Arl2 99.6 8.9E-15 1.9E-19 116.0 14.7 158 21-205 1-165 (167)
122 cd04175 Rap1 Rap1 subgroup. T 99.6 1.4E-14 3.1E-19 114.7 15.7 157 20-208 2-162 (164)
123 cd04114 Rab30 Rab30 subfamily. 99.6 2E-14 4.3E-19 114.4 16.5 156 19-207 7-167 (169)
124 TIGR00487 IF-2 translation ini 99.6 8.4E-15 1.8E-19 136.4 16.2 162 18-206 86-247 (587)
125 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 2.7E-14 5.9E-19 116.9 17.5 160 20-209 1-168 (201)
126 cd04101 RabL4 RabL4 (Rab-like4 99.6 2E-14 4.4E-19 113.8 16.3 157 20-208 1-163 (164)
127 PF10662 PduV-EutP: Ethanolami 99.6 2.3E-15 5.1E-20 112.4 10.0 141 20-205 2-142 (143)
128 cd01862 Rab7 Rab7 subfamily. 99.6 3.6E-14 7.8E-19 113.3 17.7 162 20-210 1-168 (172)
129 smart00173 RAS Ras subfamily o 99.6 1.3E-14 2.8E-19 114.9 15.0 156 21-209 2-162 (164)
130 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.2E-14 6.9E-19 128.7 19.1 123 18-151 202-324 (442)
131 cd00879 Sar1 Sar1 subfamily. 99.6 6E-15 1.3E-19 119.8 13.1 167 18-207 18-189 (190)
132 cd01863 Rab18 Rab18 subfamily. 99.6 1.4E-14 2.9E-19 114.4 14.7 157 20-206 1-159 (161)
133 cd04110 Rab35 Rab35 subfamily. 99.6 4E-14 8.7E-19 115.6 17.9 156 19-209 6-167 (199)
134 KOG0084 GTPase Rab1/YPT1, smal 99.6 3E-14 6.4E-19 109.6 15.5 164 19-212 9-175 (205)
135 cd04118 Rab24 Rab24 subfamily. 99.6 2.4E-14 5.2E-19 116.6 16.0 161 20-209 1-166 (193)
136 cd00880 Era_like Era (E. coli 99.6 3.3E-14 7.1E-19 111.9 16.3 161 24-207 1-162 (163)
137 cd04123 Rab21 Rab21 subfamily. 99.6 3.9E-14 8.5E-19 111.8 16.5 157 20-207 1-160 (162)
138 cd01890 LepA LepA subfamily. 99.6 1.6E-14 3.6E-19 116.1 14.6 159 20-208 1-176 (179)
139 cd04125 RabA_like RabA-like su 99.6 1.9E-14 4.2E-19 116.5 15.0 157 20-209 1-162 (188)
140 cd04111 Rab39 Rab39 subfamily. 99.6 7.6E-14 1.6E-18 114.8 18.3 161 20-209 3-166 (211)
141 PTZ00369 Ras-like protein; Pro 99.6 2.6E-14 5.6E-19 115.8 15.2 159 19-209 5-167 (189)
142 cd01896 DRG The developmentall 99.6 7.3E-14 1.6E-18 116.3 18.2 87 21-114 2-88 (233)
143 cd04126 Rab20 Rab20 subfamily. 99.6 2.5E-14 5.4E-19 117.6 15.2 113 20-151 1-114 (220)
144 PRK05306 infB translation init 99.6 9.5E-15 2.1E-19 139.2 14.5 161 18-206 289-449 (787)
145 cd04117 Rab15 Rab15 subfamily. 99.6 3.8E-14 8.2E-19 111.8 15.6 153 21-207 2-160 (161)
146 cd04128 Spg1 Spg1p. Spg1p (se 99.6 7.6E-14 1.6E-18 112.1 17.6 160 20-209 1-166 (182)
147 cd04116 Rab9 Rab9 subfamily. 99.6 4.1E-14 8.9E-19 112.7 16.0 160 18-206 4-168 (170)
148 cd04133 Rop_like Rop subfamily 99.6 3.9E-14 8.4E-19 112.8 15.5 164 20-208 2-172 (176)
149 cd01871 Rac1_like Rac1-like su 99.6 5E-14 1.1E-18 112.4 16.0 162 20-206 2-172 (174)
150 cd00157 Rho Rho (Ras homology) 99.6 2.7E-14 5.8E-19 113.9 14.5 162 20-206 1-170 (171)
151 smart00174 RHO Rho (Ras homolo 99.6 2.7E-14 5.8E-19 114.3 14.5 161 22-208 1-171 (174)
152 cd01870 RhoA_like RhoA-like su 99.6 5.7E-14 1.2E-18 112.5 16.3 162 20-207 2-173 (175)
153 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 1E-13 2.2E-18 114.6 18.0 166 17-208 11-187 (232)
154 CHL00189 infB translation init 99.6 2.4E-14 5.2E-19 135.2 16.0 164 18-208 243-409 (742)
155 cd04165 GTPBP1_like GTPBP1-lik 99.6 3.3E-14 7.2E-19 117.3 15.0 119 67-206 82-220 (224)
156 cd01875 RhoG RhoG subfamily. 99.6 1.2E-13 2.6E-18 112.0 18.0 165 19-209 3-177 (191)
157 cd04139 RalA_RalB RalA/RalB su 99.6 6.6E-14 1.4E-18 110.8 16.1 158 20-208 1-161 (164)
158 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1E-13 2.3E-18 111.0 17.3 164 18-207 4-178 (182)
159 PF00735 Septin: Septin; Inte 99.6 2.5E-14 5.4E-19 121.5 14.4 154 19-186 4-184 (281)
160 cd04147 Ras_dva Ras-dva subfam 99.6 4.2E-14 9E-19 115.4 15.3 158 21-209 1-163 (198)
161 cd04115 Rab33B_Rab33A Rab33B/R 99.6 8E-14 1.7E-18 111.0 16.6 117 20-152 3-124 (170)
162 PLN03108 Rab family protein; P 99.6 7.8E-14 1.7E-18 114.8 16.9 159 19-208 6-167 (210)
163 cd04131 Rnd Rnd subfamily. Th 99.6 1.2E-13 2.5E-18 110.5 17.1 163 20-207 2-174 (178)
164 PLN03118 Rab family protein; P 99.6 8.7E-14 1.9E-18 114.8 16.5 162 19-210 14-178 (211)
165 cd04135 Tc10 TC10 subfamily. 99.6 9.9E-14 2.1E-18 111.0 16.1 162 20-207 1-172 (174)
166 cd01891 TypA_BipA TypA (tyrosi 99.6 9.3E-14 2E-18 113.0 16.1 116 20-152 3-132 (194)
167 KOG1489 Predicted GTP-binding 99.6 9.6E-15 2.1E-19 120.5 10.2 163 20-206 197-364 (366)
168 cd04176 Rap2 Rap2 subgroup. T 99.6 3.7E-14 7.9E-19 112.2 13.3 155 20-206 2-160 (163)
169 cd04148 RGK RGK subfamily. Th 99.6 8.2E-14 1.8E-18 115.4 15.7 160 20-210 1-164 (221)
170 cd04137 RheB Rheb (Ras Homolog 99.6 1.3E-13 2.7E-18 111.0 16.4 159 20-210 2-164 (180)
171 cd00876 Ras Ras family. The R 99.6 8.2E-14 1.8E-18 109.8 14.8 154 21-206 1-158 (160)
172 CHL00071 tufA elongation facto 99.6 1E-13 2.3E-18 125.1 17.2 138 17-177 10-162 (409)
173 cd04143 Rhes_like Rhes_like su 99.6 1.6E-13 3.4E-18 115.1 16.5 158 20-208 1-170 (247)
174 PRK12317 elongation factor 1-a 99.6 3.3E-14 7.2E-19 129.4 13.4 160 18-199 5-195 (425)
175 cd01892 Miro2 Miro2 subfamily. 99.6 1.1E-13 2.3E-18 110.1 14.7 161 19-209 4-166 (169)
176 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 2.5E-13 5.4E-18 111.8 17.1 162 20-207 2-174 (222)
177 PRK12735 elongation factor Tu; 99.6 1.5E-13 3.3E-18 123.5 17.3 165 18-209 11-203 (396)
178 TIGR00231 small_GTP small GTP- 99.6 1.6E-13 3.5E-18 107.8 15.3 154 20-205 2-160 (161)
179 PF00025 Arf: ADP-ribosylation 99.6 5.5E-14 1.2E-18 112.1 12.3 160 17-207 12-174 (175)
180 cd04177 RSR1 RSR1 subgroup. R 99.6 2.9E-13 6.3E-18 107.5 15.9 157 20-207 2-162 (168)
181 KOG2655 Septin family protein 99.6 1.5E-12 3.2E-17 111.5 20.9 155 19-186 21-200 (366)
182 cd04129 Rho2 Rho2 subfamily. 99.5 1.4E-13 3E-18 111.4 14.0 164 20-209 2-173 (187)
183 PRK12736 elongation factor Tu; 99.5 3.3E-13 7.2E-18 121.2 17.8 169 17-209 10-201 (394)
184 KOG0073 GTP-binding ADP-ribosy 99.5 5.5E-13 1.2E-17 99.2 15.5 157 18-205 15-174 (185)
185 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1.1E-13 2.5E-18 110.5 13.0 160 20-205 1-170 (173)
186 KOG0092 GTPase Rab5/YPT51 and 99.5 9.1E-14 2E-18 106.6 11.4 159 19-210 5-168 (200)
187 KOG0078 GTP-binding protein SE 99.5 4.5E-13 9.8E-18 104.8 15.4 163 15-208 8-173 (207)
188 cd04146 RERG_RasL11_like RERG/ 99.5 1.5E-13 3.2E-18 108.9 12.8 158 21-208 1-163 (165)
189 TIGR00491 aIF-2 translation in 99.5 2E-13 4.2E-18 127.1 15.0 114 20-151 5-135 (590)
190 cd01886 EF-G Elongation factor 99.5 2.3E-13 5.1E-18 115.4 14.2 115 21-152 1-131 (270)
191 smart00176 RAN Ran (Ras-relate 99.5 5.4E-13 1.2E-17 108.3 15.6 151 25-210 1-155 (200)
192 KOG1191 Mitochondrial GTPase [ 99.5 9.8E-14 2.1E-18 121.2 11.7 178 17-210 266-451 (531)
193 KOG0394 Ras-related GTPase [Ge 99.5 3.1E-13 6.7E-18 102.6 12.9 165 19-210 9-179 (210)
194 PRK05124 cysN sulfate adenylyl 99.5 9E-14 2E-18 127.1 11.9 166 12-200 20-216 (474)
195 cd04102 RabL3 RabL3 (Rab-like3 99.5 1.8E-12 4E-17 105.1 18.1 147 20-186 1-173 (202)
196 PLN03127 Elongation factor Tu; 99.5 3.4E-13 7.3E-18 122.2 15.3 119 17-152 59-192 (447)
197 TIGR03680 eif2g_arch translati 99.5 2.4E-13 5.2E-18 122.6 14.3 167 18-209 3-196 (406)
198 COG0536 Obg Predicted GTPase [ 99.5 4.6E-13 1E-17 112.1 14.7 168 21-210 161-334 (369)
199 KOG0095 GTPase Rab30, small G 99.5 5.9E-13 1.3E-17 97.2 13.4 156 20-206 8-166 (213)
200 KOG0080 GTPase Rab18, small G 99.5 5.1E-13 1.1E-17 98.8 13.2 159 19-207 11-172 (209)
201 cd04103 Centaurin_gamma Centau 99.5 4E-13 8.6E-18 105.3 13.7 152 20-206 1-156 (158)
202 PRK00049 elongation factor Tu; 99.5 6.4E-13 1.4E-17 119.4 16.7 119 17-152 10-143 (396)
203 COG1163 DRG Predicted GTPase [ 99.5 2.4E-13 5.3E-18 112.8 12.7 96 12-114 56-151 (365)
204 cd04168 TetM_like Tet(M)-like 99.5 3.3E-13 7.2E-18 112.5 13.5 115 21-152 1-131 (237)
205 PRK04000 translation initiatio 99.5 4.9E-13 1.1E-17 120.5 15.5 168 17-209 7-201 (411)
206 TIGR02034 CysN sulfate adenyly 99.5 2.2E-13 4.7E-18 122.8 13.1 156 20-199 1-187 (406)
207 TIGR00485 EF-Tu translation el 99.5 7.6E-13 1.6E-17 119.1 16.3 120 17-152 10-143 (394)
208 cd01883 EF1_alpha Eukaryotic e 99.5 2.7E-13 5.8E-18 112.2 12.0 156 21-198 1-194 (219)
209 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 2.1E-12 4.5E-17 99.2 15.6 159 19-210 22-186 (221)
210 PRK05506 bifunctional sulfate 99.5 2.5E-13 5.5E-18 129.3 13.0 161 15-199 20-211 (632)
211 TIGR00483 EF-1_alpha translati 99.5 6.5E-13 1.4E-17 120.9 15.1 161 17-199 5-197 (426)
212 COG0532 InfB Translation initi 99.5 8.9E-13 1.9E-17 117.2 15.0 162 20-208 6-169 (509)
213 KOG1145 Mitochondrial translat 99.5 1.3E-12 2.8E-17 115.5 15.8 162 19-207 153-314 (683)
214 cd04169 RF3 RF3 subfamily. Pe 99.5 1.3E-12 2.9E-17 110.7 15.4 116 20-152 3-138 (267)
215 TIGR01394 TypA_BipA GTP-bindin 99.5 1.2E-12 2.6E-17 122.4 16.4 166 20-210 2-192 (594)
216 PF00350 Dynamin_N: Dynamin fa 99.5 3.1E-13 6.8E-18 107.4 10.9 115 22-147 1-168 (168)
217 KOG1547 Septin CDC10 and relat 99.5 2.1E-12 4.5E-17 102.5 15.0 152 19-184 46-224 (336)
218 KOG0098 GTPase Rab2, small G p 99.5 2.6E-12 5.7E-17 97.8 14.8 157 19-206 6-165 (216)
219 PTZ00132 GTP-binding nuclear p 99.5 3.7E-12 8.1E-17 105.4 17.2 157 18-210 8-169 (215)
220 KOG0087 GTPase Rab11/YPT3, sma 99.5 2.1E-12 4.5E-17 100.6 14.2 117 19-151 14-133 (222)
221 PRK04004 translation initiatio 99.5 1.7E-12 3.7E-17 121.4 16.2 113 20-150 7-136 (586)
222 TIGR01393 lepA GTP-binding pro 99.5 1.8E-12 3.9E-17 121.5 15.9 161 20-210 4-181 (595)
223 KOG3859 Septins (P-loop GTPase 99.5 5.3E-11 1.1E-15 96.7 22.0 155 19-187 42-219 (406)
224 PRK10218 GTP-binding protein; 99.4 2.2E-12 4.7E-17 120.6 15.3 167 19-210 5-196 (607)
225 cd04167 Snu114p Snu114p subfam 99.4 6.7E-13 1.5E-17 109.5 10.6 114 21-150 2-136 (213)
226 cd04170 EF-G_bact Elongation f 99.4 3.4E-12 7.3E-17 109.1 14.9 115 21-152 1-131 (268)
227 PTZ00327 eukaryotic translatio 99.4 1.2E-12 2.7E-17 118.3 12.8 168 18-210 33-234 (460)
228 smart00053 DYNc Dynamin, GTPas 99.4 4.6E-12 1E-16 104.6 15.0 126 20-152 27-207 (240)
229 PF00071 Ras: Ras family; Int 99.4 2E-12 4.3E-17 102.1 12.4 155 21-208 1-160 (162)
230 PF08477 Miro: Miro-like prote 99.4 1.5E-13 3.3E-18 102.5 5.7 116 21-148 1-119 (119)
231 TIGR00437 feoB ferrous iron tr 99.4 3E-12 6.6E-17 120.1 15.6 154 26-208 1-154 (591)
232 cd00882 Ras_like_GTPase Ras-li 99.4 3.3E-12 7.2E-17 99.4 13.5 151 24-205 1-156 (157)
233 COG4917 EutP Ethanolamine util 99.4 4.5E-13 9.8E-18 95.0 7.1 142 20-206 2-143 (148)
234 cd01873 RhoBTB RhoBTB subfamil 99.4 8.4E-12 1.8E-16 101.1 15.6 160 20-206 3-193 (195)
235 PLN00023 GTP-binding protein; 99.4 3.7E-12 7.9E-17 108.5 13.7 124 14-152 16-166 (334)
236 cd04105 SR_beta Signal recogni 99.4 5E-12 1.1E-16 103.2 13.9 115 21-152 2-124 (203)
237 PTZ00141 elongation factor 1- 99.4 3.8E-12 8.3E-17 115.6 14.2 159 18-198 6-202 (446)
238 PRK05433 GTP-binding protein L 99.4 5.9E-12 1.3E-16 118.2 15.8 162 19-210 7-185 (600)
239 PLN03126 Elongation factor Tu; 99.4 6.7E-12 1.5E-16 114.4 15.5 138 17-176 79-230 (478)
240 COG2229 Predicted GTPase [Gene 99.4 2.1E-11 4.6E-16 93.2 15.3 119 19-152 10-136 (187)
241 COG1100 GTPase SAR1 and relate 99.4 2E-11 4.3E-16 101.5 16.1 116 20-152 6-126 (219)
242 cd01885 EF2 EF2 (for archaea a 99.4 4.1E-12 8.9E-17 104.4 11.3 115 20-150 1-138 (222)
243 KOG0079 GTP-binding protein H- 99.4 1.5E-11 3.2E-16 89.8 12.3 156 21-208 10-168 (198)
244 PF05049 IIGP: Interferon-indu 99.4 5.7E-12 1.2E-16 109.6 11.9 118 19-149 35-153 (376)
245 TIGR00484 EF-G translation elo 99.3 1.7E-11 3.7E-16 118.0 14.8 118 18-152 9-142 (689)
246 PRK12739 elongation factor G; 99.3 2E-11 4.4E-16 117.4 15.3 118 18-152 7-140 (691)
247 PRK00007 elongation factor G; 99.3 2.3E-11 5E-16 116.9 15.3 118 18-152 9-142 (693)
248 KOG0093 GTPase Rab3, small G p 99.3 1.9E-11 4.1E-16 89.2 11.1 162 19-210 21-184 (193)
249 KOG0070 GTP-binding ADP-ribosy 99.3 1E-11 2.3E-16 95.1 9.8 163 17-210 15-179 (181)
250 PRK13351 elongation factor G; 99.3 3E-11 6.5E-16 116.5 15.3 118 18-152 7-140 (687)
251 KOG1532 GTPase XAB1, interacts 99.3 1.3E-11 2.7E-16 100.2 10.3 134 70-210 117-265 (366)
252 TIGR02836 spore_IV_A stage IV 99.3 9.2E-11 2E-15 101.7 15.7 132 16-152 14-195 (492)
253 TIGR00503 prfC peptide chain r 99.3 3.3E-11 7.2E-16 111.4 14.0 118 18-152 10-147 (527)
254 PRK09435 membrane ATPase/prote 99.3 1.8E-10 4E-15 99.6 17.0 111 68-209 148-260 (332)
255 PLN00043 elongation factor 1-a 99.3 5.8E-11 1.3E-15 107.9 14.5 160 17-198 5-202 (447)
256 PRK00741 prfC peptide chain re 99.3 5.9E-11 1.3E-15 109.7 14.4 118 18-152 9-146 (526)
257 COG0488 Uup ATPase components 99.3 1.8E-13 3.9E-18 125.3 -2.3 138 6-163 337-484 (530)
258 cd01899 Ygr210 Ygr210 subfamil 99.3 8.7E-11 1.9E-15 101.6 14.2 87 22-114 1-110 (318)
259 cd01882 BMS1 Bms1. Bms1 is an 99.3 5.4E-10 1.2E-14 92.7 17.7 110 17-152 37-148 (225)
260 KOG1490 GTP-binding protein CR 99.3 4.7E-11 1E-15 104.7 11.4 134 16-159 165-301 (620)
261 KOG0075 GTP-binding ADP-ribosy 99.3 3.6E-11 7.8E-16 87.8 8.3 158 19-208 20-181 (186)
262 KOG0448 Mitofusin 1 GTPase, in 99.2 4.5E-09 9.7E-14 95.9 22.6 133 18-163 108-287 (749)
263 KOG0091 GTPase Rab39, small G 99.2 2.3E-10 5E-15 85.2 11.6 161 19-207 8-171 (213)
264 KOG0462 Elongation factor-type 99.2 1.6E-10 3.4E-15 102.5 12.3 168 15-212 56-238 (650)
265 KOG0074 GTP-binding ADP-ribosy 99.2 5.3E-11 1.1E-15 86.4 7.4 128 12-159 10-139 (185)
266 COG5256 TEF1 Translation elong 99.2 3.7E-10 8.1E-15 97.4 13.7 162 17-200 5-202 (428)
267 KOG0086 GTPase Rab4, small G p 99.2 7.4E-10 1.6E-14 81.5 13.2 115 20-152 10-129 (214)
268 PF09439 SRPRB: Signal recogni 99.2 7.7E-11 1.7E-15 92.4 8.3 119 19-152 3-127 (181)
269 KOG0076 GTP-binding ADP-ribosy 99.2 1.6E-10 3.5E-15 87.1 8.6 167 18-211 16-189 (197)
270 cd01900 YchF YchF subfamily. 99.2 1.9E-10 4.2E-15 97.0 9.9 87 22-114 1-103 (274)
271 KOG0088 GTPase Rab21, small G 99.2 3.3E-10 7.2E-15 83.9 9.7 157 20-208 14-174 (218)
272 PRK10636 putative ABC transpor 99.2 4E-10 8.7E-15 107.6 13.1 141 6-163 327-475 (638)
273 COG3276 SelB Selenocysteine-sp 99.2 8.1E-10 1.7E-14 96.1 13.4 159 21-208 2-161 (447)
274 KOG0071 GTP-binding ADP-ribosy 99.2 2.6E-09 5.7E-14 77.5 13.8 159 17-207 15-176 (180)
275 KOG0410 Predicted GTP binding 99.2 2.4E-10 5.2E-15 95.0 9.7 160 19-209 178-341 (410)
276 PTZ00258 GTP-binding protein; 99.1 3.4E-10 7.3E-15 99.8 10.9 92 17-114 19-126 (390)
277 PTZ00416 elongation factor 2; 99.1 3E-10 6.4E-15 111.1 11.5 118 17-150 17-157 (836)
278 PRK09601 GTP-binding protein Y 99.1 4.5E-10 9.8E-15 97.8 11.1 88 20-114 3-107 (364)
279 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 7.8E-10 1.7E-14 90.9 11.6 125 21-152 1-126 (232)
280 PRK11147 ABC transporter ATPas 99.1 3.6E-10 7.8E-15 108.2 11.2 142 6-163 334-485 (635)
281 KOG0395 Ras-related GTPase [Ge 99.1 2.8E-09 6E-14 85.9 13.2 160 19-210 3-166 (196)
282 PLN00116 translation elongatio 99.1 6.6E-10 1.4E-14 108.9 11.3 118 17-150 17-163 (843)
283 KOG1707 Predicted Ras related/ 99.1 3.5E-10 7.5E-15 101.2 8.3 165 19-210 9-176 (625)
284 TIGR00490 aEF-2 translation el 99.1 3.2E-10 7E-15 109.5 8.8 118 18-152 18-153 (720)
285 PRK13768 GTPase; Provisional 99.1 7.9E-10 1.7E-14 93.2 9.9 133 69-210 97-248 (253)
286 KOG0393 Ras-related small GTPa 99.1 9.9E-10 2.2E-14 86.6 9.5 116 19-152 4-124 (198)
287 cd01858 NGP_1 NGP-1. Autoanti 99.1 4.4E-10 9.4E-15 88.1 7.3 57 18-79 101-157 (157)
288 cd01851 GBP Guanylate-binding 99.1 3E-09 6.4E-14 88.0 12.3 107 19-130 7-116 (224)
289 COG5257 GCD11 Translation init 99.0 1.3E-09 2.8E-14 90.7 9.1 167 19-210 10-203 (415)
290 COG1120 FepC ABC-type cobalami 99.0 6.7E-10 1.5E-14 91.8 7.3 145 3-163 14-183 (258)
291 KOG0097 GTPase Rab14, small G 99.0 1.3E-08 2.7E-13 74.0 12.8 118 20-152 12-131 (215)
292 COG2895 CysN GTPases - Sulfate 99.0 5.8E-09 1.3E-13 88.0 11.9 156 18-197 5-191 (431)
293 KOG1486 GTP-binding protein DR 99.0 5.9E-09 1.3E-13 83.8 11.0 100 5-114 50-150 (364)
294 PRK10636 putative ABC transpor 99.0 6.5E-09 1.4E-13 99.5 12.6 49 2-56 12-60 (638)
295 PF03193 DUF258: Protein of un 99.0 4.4E-10 9.5E-15 86.3 3.6 62 20-85 36-103 (161)
296 TIGR00750 lao LAO/AO transport 99.0 2.7E-08 5.9E-13 86.3 15.0 113 68-210 126-239 (300)
297 PRK12740 elongation factor G; 99.0 8.9E-09 1.9E-13 99.4 13.2 111 25-152 1-127 (668)
298 cd04178 Nucleostemin_like Nucl 99.0 1.8E-09 3.9E-14 85.2 6.8 56 19-79 117-172 (172)
299 COG0012 Predicted GTPase, prob 99.0 3.5E-08 7.6E-13 84.9 14.9 88 19-113 2-107 (372)
300 KOG1954 Endocytosis/signaling 99.0 5.9E-09 1.3E-13 88.4 10.0 132 18-159 57-231 (532)
301 COG1116 TauB ABC-type nitrate/ 98.9 1E-08 2.2E-13 83.4 10.9 47 4-56 16-62 (248)
302 PRK14845 translation initiatio 98.9 1.1E-08 2.3E-13 100.7 12.8 104 30-151 472-592 (1049)
303 PRK07560 elongation factor EF- 98.9 3.8E-09 8.2E-14 102.4 9.6 118 18-151 19-153 (731)
304 PRK09602 translation-associate 98.9 8.6E-09 1.9E-13 92.1 11.1 89 20-114 2-113 (396)
305 KOG0927 Predicted transporter 98.9 7.1E-09 1.5E-13 92.4 10.1 133 18-163 415-554 (614)
306 KOG0090 Signal recognition par 98.9 2.3E-08 5.1E-13 78.5 11.7 127 20-162 39-171 (238)
307 KOG0062 ATPase component of AB 98.9 7.7E-10 1.7E-14 97.8 3.8 43 115-163 197-243 (582)
308 cd01849 YlqF_related_GTPase Yl 98.9 3.7E-09 8E-14 82.6 6.8 57 18-79 99-155 (155)
309 COG0480 FusA Translation elong 98.9 4.3E-08 9.3E-13 92.8 14.2 119 17-152 8-143 (697)
310 KOG4252 GTP-binding protein [S 98.9 3.3E-09 7.1E-14 80.4 5.3 119 18-152 19-139 (246)
311 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 6.9E-09 1.5E-13 79.6 7.2 57 20-81 84-140 (141)
312 KOG2486 Predicted GTPase [Gene 98.9 2.2E-08 4.8E-13 81.9 10.2 127 16-152 133-263 (320)
313 cd01855 YqeH YqeH. YqeH is an 98.8 5.1E-09 1.1E-13 84.8 6.1 57 19-79 127-190 (190)
314 KOG0081 GTPase Rab27, small G 98.8 9E-09 2E-13 76.4 6.5 159 20-208 10-180 (219)
315 PRK09563 rbgA GTPase YlqF; Rev 98.8 2.3E-08 4.9E-13 86.2 9.8 65 18-87 120-184 (287)
316 PRK12288 GTPase RsgA; Reviewed 98.8 1.2E-08 2.6E-13 89.6 8.1 61 20-84 206-272 (347)
317 PRK11147 ABC transporter ATPas 98.8 4E-08 8.6E-13 94.3 12.3 43 115-163 155-201 (635)
318 KOG0072 GTP-binding ADP-ribosy 98.8 1.6E-08 3.4E-13 74.0 6.7 161 17-210 16-180 (182)
319 KOG0458 Elongation factor 1 al 98.8 7.4E-08 1.6E-12 86.7 12.2 142 15-177 173-351 (603)
320 KOG0461 Selenocysteine-specifi 98.8 1.6E-07 3.5E-12 79.1 13.4 168 19-209 7-193 (522)
321 COG1217 TypA Predicted membran 98.8 5.7E-08 1.2E-12 85.0 10.9 168 20-212 6-198 (603)
322 TIGR03596 GTPase_YlqF ribosome 98.8 3E-08 6.4E-13 85.0 9.2 64 18-86 117-180 (276)
323 KOG1144 Translation initiation 98.8 5.7E-08 1.2E-12 89.4 11.2 167 20-209 476-687 (1064)
324 KOG0077 Vesicle coat complex C 98.8 4.9E-08 1.1E-12 73.3 8.9 115 19-152 20-136 (193)
325 PRK12289 GTPase RsgA; Reviewed 98.8 1.7E-08 3.6E-13 88.6 7.5 60 20-83 173-238 (352)
326 TIGR00157 ribosome small subun 98.8 1.7E-08 3.7E-13 84.7 6.9 60 20-84 121-186 (245)
327 KOG0066 eIF2-interacting prote 98.8 4.6E-08 9.9E-13 85.2 9.4 48 115-173 411-462 (807)
328 cd03222 ABC_RNaseL_inhibitor T 98.8 7.5E-08 1.6E-12 76.3 10.1 35 18-56 24-58 (177)
329 cd03293 ABC_NrtD_SsuB_transpor 98.8 6.2E-08 1.3E-12 80.4 10.1 43 7-55 20-62 (220)
330 cd03259 ABC_Carb_Solutes_like 98.8 3.9E-08 8.6E-13 81.2 8.8 44 6-55 15-58 (213)
331 PRK11247 ssuB aliphatic sulfon 98.8 3.4E-08 7.3E-13 83.7 8.6 139 6-161 27-176 (257)
332 TIGR03597 GTPase_YqeH ribosome 98.8 4.9E-09 1.1E-13 93.0 3.4 122 20-150 155-279 (360)
333 COG1121 ZnuC ABC-type Mn/Zn tr 98.7 2E-08 4.4E-13 82.7 6.6 44 6-55 19-62 (254)
334 COG4988 CydD ABC-type transpor 98.7 6.3E-08 1.4E-12 87.7 10.2 147 5-162 335-500 (559)
335 COG0481 LepA Membrane GTPase L 98.7 7.7E-08 1.7E-12 84.4 10.3 164 20-213 10-190 (603)
336 COG0050 TufB GTPases - transla 98.7 1.2E-07 2.6E-12 78.2 10.8 139 17-177 10-162 (394)
337 PF03308 ArgK: ArgK protein; 98.7 1.1E-07 2.4E-12 78.0 10.6 157 18-209 28-230 (266)
338 PRK11819 putative ABC transpor 98.7 1.3E-07 2.8E-12 89.4 12.7 46 4-55 20-65 (556)
339 COG1162 Predicted GTPases [Gen 98.7 2.3E-08 5E-13 84.0 6.7 62 19-84 164-231 (301)
340 KOG1491 Predicted GTP-binding 98.7 3.8E-07 8.2E-12 76.9 13.8 90 17-113 18-124 (391)
341 COG1703 ArgK Putative periplas 98.7 3.9E-07 8.4E-12 75.9 13.7 109 68-210 143-255 (323)
342 KOG0066 eIF2-interacting prote 98.7 2.1E-08 4.6E-13 87.3 6.3 125 20-163 614-749 (807)
343 cd01856 YlqF YlqF. Proteins o 98.7 4.2E-08 9E-13 78.0 7.5 58 18-80 114-171 (171)
344 COG1131 CcmA ABC-type multidru 98.7 1.6E-08 3.5E-13 87.1 5.4 136 4-152 18-172 (293)
345 cd03261 ABC_Org_Solvent_Resist 98.7 6.7E-08 1.4E-12 81.1 9.0 43 7-55 16-58 (235)
346 PRK13543 cytochrome c biogenes 98.7 3E-08 6.5E-13 81.9 6.6 132 18-162 36-181 (214)
347 PRK00098 GTPase RsgA; Reviewed 98.7 5.3E-08 1.2E-12 84.2 8.3 60 19-82 164-229 (298)
348 PRK11248 tauB taurine transpor 98.7 7.6E-08 1.7E-12 81.6 9.1 44 6-55 16-59 (255)
349 COG1124 DppF ABC-type dipeptid 98.7 1.1E-07 2.4E-12 76.8 9.2 157 7-186 23-201 (252)
350 cd03230 ABC_DR_subfamily_A Thi 98.7 1.8E-07 4E-12 74.4 10.6 27 18-44 25-51 (173)
351 TIGR03719 ABC_ABC_ChvD ATP-bin 98.7 2.3E-07 5E-12 87.7 12.9 45 5-55 19-63 (552)
352 TIGR01425 SRP54_euk signal rec 98.7 4.4E-07 9.5E-12 81.2 13.7 122 19-152 100-254 (429)
353 PRK15064 ABC transporter ATP-b 98.7 2.9E-07 6.2E-12 86.7 13.4 44 6-55 16-59 (530)
354 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.7 9.1E-08 2E-12 73.5 8.3 33 18-54 25-57 (144)
355 KOG0083 GTPase Rab26/Rab37, sm 98.7 4.3E-08 9.2E-13 70.6 5.9 157 24-210 2-161 (192)
356 KOG0927 Predicted transporter 98.7 1.3E-08 2.8E-13 90.8 4.0 43 115-163 220-266 (614)
357 COG4108 PrfC Peptide chain rel 98.7 2.8E-07 6.1E-12 80.2 11.8 118 18-152 11-148 (528)
358 cd03265 ABC_DrrA DrrA is the A 98.7 7.3E-08 1.6E-12 80.0 8.0 36 7-44 16-51 (220)
359 COG3839 MalK ABC-type sugar tr 98.7 1.8E-07 3.8E-12 80.8 10.3 125 6-144 18-157 (338)
360 cd03223 ABCD_peroxisomal_ALDP 98.7 1.5E-07 3.2E-12 74.3 9.2 114 7-161 17-134 (166)
361 PRK10584 putative ABC transpor 98.7 1.2E-07 2.6E-12 79.2 9.2 43 7-55 26-68 (228)
362 cd01854 YjeQ_engC YjeQ/EngC. 98.7 7.5E-08 1.6E-12 82.9 8.1 59 20-82 162-226 (287)
363 cd03301 ABC_MalK_N The N-termi 98.7 1E-07 2.2E-12 78.7 8.5 37 6-44 15-51 (213)
364 PTZ00099 rab6; Provisional 98.7 4.6E-07 9.9E-12 72.2 11.8 114 69-210 29-143 (176)
365 cd03256 ABC_PhnC_transporter A 98.7 7.4E-08 1.6E-12 81.2 7.7 37 6-44 16-52 (241)
366 PF03029 ATP_bind_1: Conserved 98.7 3.7E-08 8.1E-13 82.0 5.7 133 70-209 92-237 (238)
367 cd03229 ABC_Class3 This class 98.7 1.3E-07 2.8E-12 75.7 8.7 27 18-44 25-51 (178)
368 TIGR00960 3a0501s02 Type II (G 98.7 5.9E-08 1.3E-12 80.3 6.8 43 7-55 19-61 (216)
369 TIGR02673 FtsE cell division A 98.7 7.2E-08 1.6E-12 79.7 7.3 44 6-55 17-60 (214)
370 PRK11000 maltose/maltodextrin 98.7 9E-08 1.9E-12 85.4 8.4 44 6-55 18-61 (369)
371 cd03213 ABCG_EPDR ABCG transpo 98.7 1.4E-07 3E-12 76.5 8.8 119 6-152 24-147 (194)
372 cd03237 ABC_RNaseL_inhibitor_d 98.6 1.8E-07 3.9E-12 78.7 9.4 35 18-56 24-58 (246)
373 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.6 1.8E-07 3.9E-12 77.5 9.4 44 6-55 19-62 (218)
374 PRK11432 fbpC ferric transport 98.6 9.4E-08 2E-12 84.5 8.0 131 8-152 23-172 (351)
375 TIGR02315 ABC_phnC phosphonate 98.6 1.4E-07 3E-12 79.6 8.8 37 6-44 17-53 (243)
376 cd03226 ABC_cobalt_CbiO_domain 98.6 5.5E-08 1.2E-12 79.8 6.2 43 7-55 16-58 (205)
377 COG1161 Predicted GTPases [Gen 98.6 8.5E-08 1.8E-12 83.6 7.6 63 19-86 132-194 (322)
378 cd03294 ABC_Pro_Gly_Bertaine T 98.6 1.8E-07 3.8E-12 80.1 9.5 43 7-55 40-82 (269)
379 TIGR01186 proV glycine betaine 98.6 1.3E-07 2.9E-12 83.6 8.7 134 6-152 8-165 (363)
380 cd03269 ABC_putative_ATPase Th 98.6 4.5E-08 9.9E-13 80.6 5.4 34 18-55 25-58 (210)
381 COG3840 ThiQ ABC-type thiamine 98.6 9.6E-08 2.1E-12 73.5 6.6 114 18-143 24-153 (231)
382 COG1136 SalX ABC-type antimicr 98.6 4.5E-07 9.8E-12 73.7 10.9 44 7-56 21-64 (226)
383 cd03258 ABC_MetN_methionine_tr 98.6 2.2E-07 4.8E-12 77.8 9.6 45 6-56 20-64 (233)
384 COG5192 BMS1 GTP-binding prote 98.6 1E-06 2.3E-11 79.0 13.9 118 20-163 70-188 (1077)
385 cd03231 ABC_CcmA_heme_exporter 98.6 9.2E-08 2E-12 78.1 7.0 43 7-55 16-58 (201)
386 TIGR01188 drrA daunorubicin re 98.6 5.5E-08 1.2E-12 84.6 6.0 141 6-162 8-168 (302)
387 TIGR02211 LolD_lipo_ex lipopro 98.6 2.6E-07 5.6E-12 76.8 9.7 43 7-55 21-63 (221)
388 cd03298 ABC_ThiQ_thiamine_tran 98.6 2.3E-07 5E-12 76.5 9.2 34 18-55 23-56 (211)
389 TIGR01288 nodI ATP-binding ABC 98.6 9.8E-08 2.1E-12 83.1 7.1 143 6-163 19-180 (303)
390 cd01859 MJ1464 MJ1464. This f 98.6 1.4E-07 3.1E-12 73.7 7.4 57 18-79 100-156 (156)
391 TIGR01166 cbiO cobalt transpor 98.6 1.2E-07 2.5E-12 76.8 7.1 45 5-55 6-50 (190)
392 cd03225 ABC_cobalt_CbiO_domain 98.6 1.1E-07 2.3E-12 78.5 6.9 45 6-56 16-60 (211)
393 KOG3883 Ras family small GTPas 98.6 1.4E-06 2.9E-11 64.7 11.7 119 18-152 8-133 (198)
394 cd03262 ABC_HisP_GlnQ_permease 98.6 8.5E-08 1.8E-12 79.2 6.3 43 7-55 16-58 (213)
395 TIGR01184 ntrCD nitrate transp 98.6 2.8E-07 6E-12 77.0 9.4 34 18-55 10-43 (230)
396 TIGR02868 CydC thiol reductant 98.6 1.3E-07 2.7E-12 89.3 8.2 133 7-150 351-504 (529)
397 PRK11650 ugpC glycerol-3-phosp 98.6 1E-07 2.2E-12 84.4 7.1 138 8-161 21-177 (356)
398 PRK10416 signal recognition pa 98.6 1.2E-06 2.5E-11 76.2 13.4 125 18-152 113-274 (318)
399 cd03219 ABC_Mj1267_LivG_branch 98.6 3.1E-07 6.7E-12 77.1 9.7 36 7-44 16-51 (236)
400 COG4586 ABC-type uncharacteriz 98.6 1.9E-07 4.1E-12 76.6 7.8 139 9-163 42-201 (325)
401 COG2274 SunT ABC-type bacterio 98.6 9.2E-08 2E-12 91.3 7.0 132 6-152 488-645 (709)
402 cd03296 ABC_CysA_sulfate_impor 98.6 2.4E-07 5.1E-12 78.0 8.7 36 7-44 18-53 (239)
403 TIGR00092 GTP-binding protein 98.6 2.4E-07 5.2E-12 81.0 9.0 90 20-114 3-108 (368)
404 PRK13538 cytochrome c biogenes 98.6 7.7E-08 1.7E-12 78.8 5.6 44 7-56 17-60 (204)
405 PRK13537 nodulation ABC transp 98.6 1.2E-07 2.6E-12 82.6 7.0 140 7-162 23-182 (306)
406 cd03266 ABC_NatA_sodium_export 98.6 1E-07 2.2E-12 79.0 6.3 45 6-56 20-64 (218)
407 COG4152 ABC-type uncharacteriz 98.6 2.8E-07 6.1E-12 74.4 8.4 145 2-163 13-175 (300)
408 PRK11629 lolD lipoprotein tran 98.6 3.7E-07 8E-12 76.5 9.5 44 7-56 25-68 (233)
409 TIGR03265 PhnT2 putative 2-ami 98.6 1.4E-07 3.1E-12 83.4 7.2 129 8-150 21-168 (353)
410 PRK13536 nodulation factor exp 98.6 1.3E-07 2.9E-12 83.2 6.9 142 6-163 56-217 (340)
411 TIGR03608 L_ocin_972_ABC putat 98.6 1.7E-07 3.6E-12 77.0 7.0 44 6-55 13-56 (206)
412 PF00448 SRP54: SRP54-type pro 98.6 3.2E-07 7E-12 74.0 8.5 72 69-152 84-155 (196)
413 TIGR01277 thiQ thiamine ABC tr 98.6 5.2E-07 1.1E-11 74.5 9.8 34 18-55 23-56 (213)
414 PRK14721 flhF flagellar biosyn 98.6 2.6E-07 5.6E-12 82.6 8.5 124 17-152 189-341 (420)
415 KOG0447 Dynamin-like GTP bindi 98.6 1.2E-06 2.5E-11 78.4 12.3 132 18-152 307-494 (980)
416 PRK11124 artP arginine transpo 98.6 2.4E-07 5.1E-12 78.2 7.8 35 18-56 27-61 (242)
417 cd03295 ABC_OpuCA_Osmoprotecti 98.6 2.9E-07 6.3E-12 77.6 8.4 43 7-55 17-59 (242)
418 cd03215 ABC_Carb_Monos_II This 98.6 4.8E-07 1E-11 72.7 9.2 35 18-56 25-59 (182)
419 PRK10463 hydrogenase nickel in 98.6 4.9E-08 1.1E-12 82.4 3.6 55 139-206 232-286 (290)
420 cd03246 ABCC_Protease_Secretio 98.6 3.1E-07 6.7E-12 73.1 8.0 42 8-55 19-60 (173)
421 cd03292 ABC_FtsE_transporter F 98.6 1.8E-07 4E-12 77.3 7.0 44 6-55 16-59 (214)
422 PRK10908 cell division protein 98.6 2E-07 4.3E-12 77.5 7.2 43 7-55 18-60 (222)
423 cd03218 ABC_YhbG The ABC trans 98.6 2.8E-07 6.1E-12 77.2 8.1 43 7-55 16-58 (232)
424 PRK11264 putative amino-acid A 98.6 2.4E-07 5.1E-12 78.6 7.7 37 6-44 18-54 (250)
425 PRK15056 manganese/iron transp 98.6 1.5E-07 3.3E-12 80.6 6.6 36 7-44 23-58 (272)
426 cd03264 ABC_drug_resistance_li 98.5 7.9E-08 1.7E-12 79.3 4.6 35 7-44 16-50 (211)
427 cd03300 ABC_PotA_N PotA is an 98.5 4.9E-07 1.1E-11 75.6 9.5 45 6-56 15-59 (232)
428 PRK11144 modC molybdate transp 98.5 4.7E-07 1E-11 80.4 9.6 34 18-55 23-56 (352)
429 PRK10575 iron-hydroxamate tran 98.5 3.8E-07 8.3E-12 77.9 8.8 43 7-55 27-69 (265)
430 cd03297 ABC_ModC_molybdenum_tr 98.5 5.1E-07 1.1E-11 74.6 9.2 32 20-55 24-55 (214)
431 PRK09452 potA putrescine/sperm 98.5 2.3E-07 4.9E-12 82.7 7.5 43 7-55 30-72 (375)
432 PRK13546 teichoic acids export 98.5 4.5E-07 9.9E-12 77.1 9.0 35 18-56 49-83 (264)
433 PRK10771 thiQ thiamine transpo 98.5 4.8E-07 1E-11 75.7 9.0 27 18-44 24-50 (232)
434 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.5 1.7E-07 3.7E-12 77.9 6.2 45 5-55 36-80 (224)
435 PLN03073 ABC transporter F fam 98.5 3.5E-07 7.6E-12 88.2 9.2 43 115-163 343-389 (718)
436 PRK09536 btuD corrinoid ABC tr 98.5 1.4E-07 3E-12 84.6 6.0 43 7-55 19-61 (402)
437 PRK11153 metN DL-methionine tr 98.5 5.2E-07 1.1E-11 79.8 9.6 44 7-56 21-64 (343)
438 TIGR03522 GldA_ABC_ATP gliding 98.5 1.3E-07 2.8E-12 82.2 5.7 131 18-162 27-177 (301)
439 PRK11889 flhF flagellar biosyn 98.5 3.6E-07 7.7E-12 80.0 8.2 122 19-152 241-392 (436)
440 PRK10851 sulfate/thiosulfate t 98.5 2.8E-07 6E-12 81.6 7.7 43 8-56 19-61 (353)
441 TIGR02142 modC_ABC molybdenum 98.5 6.1E-07 1.3E-11 79.8 9.9 34 18-55 22-55 (354)
442 cd03224 ABC_TM1139_LivF_branch 98.5 1.9E-07 4.1E-12 77.7 6.3 35 18-56 25-59 (222)
443 TIGR03005 ectoine_ehuA ectoine 98.5 4.5E-07 9.8E-12 76.9 8.7 34 18-55 25-58 (252)
444 cd03232 ABC_PDR_domain2 The pl 98.5 5.3E-07 1.2E-11 73.0 8.7 110 18-152 32-144 (192)
445 PRK09544 znuC high-affinity zi 98.5 3.5E-07 7.7E-12 77.3 8.0 34 18-55 29-62 (251)
446 PRK11831 putative ABC transpor 98.5 4.7E-07 1E-11 77.5 8.8 34 18-55 32-65 (269)
447 PRK10070 glycine betaine trans 98.5 4.2E-07 9E-12 81.5 8.7 139 8-161 45-207 (400)
448 cd03216 ABC_Carb_Monos_I This 98.5 1.2E-06 2.5E-11 69.0 10.2 27 18-44 25-51 (163)
449 PRK13541 cytochrome c biogenes 98.5 2.4E-07 5.2E-12 75.3 6.5 34 18-55 25-58 (195)
450 PRK10619 histidine/lysine/argi 98.5 2.8E-07 6E-12 78.5 7.1 44 7-56 21-64 (257)
451 cd03235 ABC_Metallic_Cations A 98.5 1.4E-07 3E-12 77.9 5.0 43 7-55 15-57 (213)
452 COG4525 TauB ABC-type taurine 98.5 2E-06 4.3E-11 67.2 10.9 47 7-59 21-67 (259)
453 PRK15064 ABC transporter ATP-b 98.5 1.4E-07 3E-12 88.9 5.6 44 6-55 334-377 (530)
454 PRK15112 antimicrobial peptide 98.5 1.1E-06 2.4E-11 75.1 10.6 45 6-56 28-72 (267)
455 cd03263 ABC_subfamily_A The AB 98.5 2.3E-07 5E-12 77.0 6.2 44 6-55 17-60 (220)
456 TIGR03348 VI_IcmF type VI secr 98.5 7.6E-07 1.7E-11 90.8 11.0 123 20-151 112-257 (1169)
457 TIGR02769 nickel_nikE nickel i 98.5 1.3E-06 2.9E-11 74.5 11.0 45 6-56 26-70 (265)
458 cd03267 ABC_NatA_like Similar 98.5 6.3E-07 1.4E-11 75.2 8.8 44 6-55 36-79 (236)
459 cd03214 ABC_Iron-Siderophores_ 98.5 1.8E-07 3.9E-12 75.0 5.3 27 18-44 24-50 (180)
460 TIGR03410 urea_trans_UrtE urea 98.5 4E-07 8.7E-12 76.1 7.6 44 7-56 16-59 (230)
461 PRK13539 cytochrome c biogenes 98.5 1.8E-07 3.9E-12 76.8 5.4 43 7-55 18-60 (207)
462 PRK14722 flhF flagellar biosyn 98.5 1.2E-06 2.6E-11 77.2 10.7 129 18-152 136-296 (374)
463 TIGR03411 urea_trans_UrtD urea 98.5 3.1E-07 6.6E-12 77.5 6.8 35 18-56 27-61 (242)
464 cd03257 ABC_NikE_OppD_transpor 98.5 9.1E-07 2E-11 73.9 9.6 44 6-55 20-63 (228)
465 TIGR01189 ccmA heme ABC export 98.5 3E-07 6.6E-12 74.9 6.5 27 18-44 25-51 (198)
466 PRK11300 livG leucine/isoleuci 98.5 4.5E-07 9.7E-12 77.1 7.8 34 18-55 30-63 (255)
467 TIGR01069 mutS2 MutS2 family p 98.5 3.9E-05 8.4E-10 74.7 21.8 23 20-42 323-345 (771)
468 PLN03073 ABC transporter F fam 98.5 1E-07 2.2E-12 91.9 4.1 43 7-55 525-567 (718)
469 PRK14250 phosphate ABC transpo 98.5 7.3E-07 1.6E-11 75.1 8.9 44 7-56 19-62 (241)
470 PRK13540 cytochrome c biogenes 98.5 2.4E-07 5.1E-12 75.7 5.7 36 7-44 17-52 (200)
471 COG3842 PotA ABC-type spermidi 98.5 2.4E-07 5.3E-12 80.4 5.9 162 5-186 19-196 (352)
472 TIGR03864 PQQ_ABC_ATP ABC tran 98.5 9.8E-07 2.1E-11 74.1 9.5 34 18-55 26-59 (236)
473 cd03268 ABC_BcrA_bacitracin_re 98.5 2.1E-07 4.6E-12 76.5 5.4 27 18-44 25-51 (208)
474 TIGR03740 galliderm_ABC gallid 98.5 5.8E-07 1.3E-11 74.8 8.0 34 18-55 25-58 (223)
475 PRK10253 iron-enterobactin tra 98.5 5.8E-07 1.3E-11 76.8 8.2 44 6-55 22-65 (265)
476 PRK10247 putative ABC transpor 98.5 1.1E-06 2.3E-11 73.2 9.6 44 6-55 22-65 (225)
477 cd03228 ABCC_MRP_Like The MRP 98.5 4.6E-07 9.9E-12 72.0 7.0 37 6-44 17-53 (171)
478 cd03247 ABCC_cytochrome_bd The 98.5 5.2E-07 1.1E-11 72.2 7.3 42 7-54 18-59 (178)
479 cd03217 ABC_FeS_Assembly ABC-t 98.5 5E-07 1.1E-11 73.7 7.3 26 18-43 25-50 (200)
480 PRK11607 potG putrescine trans 98.5 8E-07 1.7E-11 79.4 9.1 34 18-55 44-77 (377)
481 PRK13796 GTPase YqeH; Provisio 98.5 2.2E-07 4.7E-12 82.7 5.5 60 19-81 160-222 (365)
482 PRK09984 phosphonate/organopho 98.5 5.7E-07 1.2E-11 76.8 7.9 35 8-44 21-55 (262)
483 PRK13638 cbiO cobalt transport 98.5 5.3E-07 1.1E-11 77.3 7.7 44 6-55 16-59 (271)
484 TIGR02203 MsbA_lipidA lipid A 98.5 1E-06 2.2E-11 84.1 10.2 133 18-161 357-512 (571)
485 cd03233 ABC_PDR_domain1 The pl 98.5 1.2E-06 2.5E-11 71.7 9.2 36 7-44 23-58 (202)
486 PRK13548 hmuV hemin importer A 98.5 9.8E-07 2.1E-11 75.0 9.0 44 6-55 17-60 (258)
487 PRK15439 autoinducer 2 ABC tra 98.5 5.6E-07 1.2E-11 84.3 8.2 142 6-163 26-185 (510)
488 KOG1487 GTP-binding protein DR 98.5 2.9E-07 6.4E-12 74.6 5.4 88 20-114 60-147 (358)
489 TIGR01978 sufC FeS assembly AT 98.5 1.2E-06 2.7E-11 73.8 9.6 35 7-43 16-50 (243)
490 PRK13657 cyclic beta-1,2-gluca 98.4 5.8E-07 1.3E-11 85.9 8.4 133 7-151 351-506 (588)
491 TIGR03258 PhnT 2-aminoethylpho 98.4 5.7E-07 1.2E-11 79.8 7.7 35 8-44 22-56 (362)
492 TIGR02314 ABC_MetN D-methionin 98.4 1.3E-06 2.8E-11 77.0 9.8 45 6-56 20-64 (343)
493 PRK13409 putative ATPase RIL; 98.4 3.8E-07 8.2E-12 86.3 6.9 128 18-163 364-498 (590)
494 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 2.4E-07 5.1E-12 87.7 5.4 44 6-55 337-380 (552)
495 PRK13545 tagH teichoic acids e 98.4 6.1E-07 1.3E-11 82.0 7.8 35 18-56 49-83 (549)
496 TIGR00972 3a0107s01c2 phosphat 98.4 5E-07 1.1E-11 76.4 6.8 36 7-44 17-52 (247)
497 PRK09493 glnQ glutamine ABC tr 98.4 3.8E-07 8.2E-12 76.8 6.0 43 7-55 17-59 (240)
498 TIGR02324 CP_lyasePhnL phospho 98.4 2E-06 4.3E-11 71.7 10.2 37 6-44 23-59 (224)
499 TIGR00968 3a0106s01 sulfate AB 98.4 1.3E-06 2.8E-11 73.4 9.1 34 18-55 25-58 (237)
500 TIGR03771 anch_rpt_ABC anchore 98.4 1.2E-06 2.6E-11 72.8 8.8 34 18-55 5-38 (223)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=1.4e-34 Score=237.35 Aligned_cols=203 Identities=42% Similarity=0.755 Sum_probs=169.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
++|+|+|.+|+||||++|+|+|...|.+.....++|..+..+...+ ++..++|||||||.++.....++..++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 5899999999999999999999999888777777888888887766 899999999999999887777888889998888
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
..+++|+|+||++.+ +++..++..++.+..+||..++++++||+|++|.... ..+++++....+.+++.++..|++|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 889999999999999 9999999999999999999999999999999999877 6699998854456789999999999
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATE 226 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
|+.|++..........++.+|++.|..++..+++.+|...+++..++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~ 203 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEE 203 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 99999984444556689999999999999999999999988776553
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=1.1e-32 Score=224.38 Aligned_cols=195 Identities=51% Similarity=0.860 Sum_probs=172.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
++|+|+|++|+|||||+|+|+|...+.+.....++|..+..+...+ ++..++||||||+++.......+...+..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999988776665567788887777777 889999999999999776666677788888877
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
+.+++|++++|++++ +++..+...++.++..||..+++++++|+||+|.... ..+++++.. ....++.++..|+++
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 778999999999998 5999999999999999998888899999999999977 789999885 557899999999999
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
|+.|++... ++..+.++.+|++.|++++..+++.+|..++
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~ 195 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDM 195 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999987 8888999999999999999999999888764
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=177.69 Aligned_cols=178 Identities=21% Similarity=0.313 Sum_probs=143.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
...|++||++|+|||||+|.|.|... +..++...|+...+..+...+..++.++||||++.+ ...+.+.+.+.+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~ 80 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAAR 80 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHH
Confidence 36899999999999999999999988 557777788888887777667889999999999985 5566788888888
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhc-HHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.++.++|+++||++++..+..++...++.++.. .. |+++++||+|.... .. +..+... +..
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-~~----pvil~iNKID~~~~--~~~l~~~~~~-----~~~------ 142 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKT-KT----PVILVVNKIDKVKP--KTVLLKLIAF-----LKK------ 142 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhc-CC----CeEEEEEccccCCc--HHHHHHHHHH-----HHh------
Confidence 889999999999999977999999999988872 22 89999999998876 33 3333222 221
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR 222 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 222 (352)
.+.|....+.||.++.++..|++.+...+++ +..+|+.++..
T Consensus 143 --~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe-g~~~yp~d~it 184 (298)
T COG1159 143 --LLPFKEIVPISALKGDNVDTLLEIIKEYLPE-GPWYYPEDQIT 184 (298)
T ss_pred --hCCcceEEEeeccccCCHHHHHHHHHHhCCC-CCCcCChhhcc
Confidence 1234466788999999999999999999977 45567777644
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.87 E-value=5.2e-21 Score=160.95 Aligned_cols=156 Identities=24% Similarity=0.305 Sum_probs=114.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+..+|+|+|.+|+|||||+|+|+|...+...... +.+.......... ++..+.||||||+.+...........+..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 45689999999999999999999998764332222 2222222233333 788999999999998643333322223222
Q ss_pred HhcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
+. ..++|+++||.+++ .+++..+...++.+...||..+++++|+|+||+|....++..+++|+.. ..+.++.++..
T Consensus 114 l~--~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~i~~ 190 (313)
T TIGR00991 114 LL--GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRVIHS 190 (313)
T ss_pred hh--cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHHHHH
Confidence 22 24799999997765 4788899999999999999999999999999999875555789999985 77778888775
Q ss_pred cC
Q 018636 176 CD 177 (352)
Q Consensus 176 ~~ 177 (352)
..
T Consensus 191 ~~ 192 (313)
T TIGR00991 191 GA 192 (313)
T ss_pred Hh
Confidence 43
No 5
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.87 E-value=9.2e-21 Score=171.62 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=123.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|+|||||+|+|+|...+.+... .+.|+.+......+ ++..+.||||||+.+...... ....+...+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~-~~~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~-~neeILk~Ik 194 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAF-GMGTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQS-KNEKILSSVK 194 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCC-CCCceEEEEEEEEE-CCceEEEEECCCCCccccchH-HHHHHHHHHH
Confidence 37999999999999999999999987665432 23455554443444 788999999999998754322 2333333332
Q ss_pred c--ccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc-----hhcHHHHhcccCChhHH
Q 018636 99 M--AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-----EKTLEDFLGHECPKPLK 170 (352)
Q Consensus 99 ~--~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~-----~~~l~~~l~~~~~~~~~ 170 (352)
. ...++|++|||++++ .+.+.++...++.+..+||..+|+++|||+||+|....+ ...+++|+.. +.+.++
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq 273 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQ 273 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHH
Confidence 1 224789999999887 233346788999999999999999999999999998642 2579999985 778899
Q ss_pred HHHHhcCCcEEEEc
Q 018636 171 EILQLCDNRCVLFD 184 (352)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (352)
.++..|.+++..|+
T Consensus 274 ~~Irq~~g~~~l~n 287 (763)
T TIGR00993 274 QAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHhcCcceecc
Confidence 99999999888777
No 6
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=3e-20 Score=158.67 Aligned_cols=173 Identities=19% Similarity=0.242 Sum_probs=114.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|++|+|||||+|+|+|..... .+..+.|+......+...++..+.++||||+.... ..+...+......+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~--vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI--TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee--cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 79999999999999999999987522 23333344444444444356778999999997642 22334444445556
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
+.++|++++|+|++...+. +...+..+.. .+. |+++|+||+|.... ..+.+.+.. +....+
T Consensus 77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~-~~~----p~ilV~NK~Dl~~~--~~~~~~~~~--------~~~~~~--- 137 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQN-LKR----PVVLTRNKLDNKFK--DKLLPLIDK--------YAILED--- 137 (270)
T ss_pred HhhCCEEEEEEECCCCCch-HHHHHHHHHh-cCC----CEEEEEECeeCCCH--HHHHHHHHH--------HHhhcC---
Confidence 6789999999999844443 3444444443 232 89999999998744 333333222 222211
Q ss_pred EEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
+....+.||.++.++++|++.+.+.++. +..+|..++
T Consensus 138 --~~~v~~iSA~~g~gi~~L~~~l~~~l~~-~~~~~~~~~ 174 (270)
T TIGR00436 138 --FKDIVPISALTGDNTSFLAAFIEVHLPE-GPFRYPEDY 174 (270)
T ss_pred --CCceEEEecCCCCCHHHHHHHHHHhCCC-CCCCCCCcc
Confidence 1234577999999999999999998866 445566554
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=157.84 Aligned_cols=161 Identities=22% Similarity=0.230 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
..|+|||++|+|||||+|.|+|+...-. ....++|++..+....| .+..+.+|||+|+.+.. .+.+...+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 5899999999999999999999976333 22334566666777777 78889999999998742 24456777777777
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
+...+|+++||+|+...++..|.....+++. .++ |+++|+||+|..... ....+ +...
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~k----pviLvvNK~D~~~~e-~~~~e------------fysl---- 137 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRR-SKK----PVILVVNKIDNLKAE-ELAYE------------FYSL---- 137 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCC----CEEEEEEcccCchhh-hhHHH------------HHhc----
Confidence 7789999999999998899999999888883 333 999999999987430 11111 1111
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
-|....+.||.++.|+.+|++.+.+.+
T Consensus 138 --G~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 138 --GFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred --CCCCceEeehhhccCHHHHHHHHHhhc
Confidence 133444678999999999999999886
No 8
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.83 E-value=7.5e-20 Score=139.87 Aligned_cols=156 Identities=21% Similarity=0.274 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
++|+|+|.+|+|||||+|+|+|.... .+..+ +.|+......+.+ .+..+.++|+||+++......+ +.+......
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~-v~n~p-G~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK-VGNWP-GTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEE--ERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE-EEEST-TSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHH--HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce-ecCCC-CCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcH--HHHHHHHHh
Confidence 48999999999999999999999853 33333 3456665556666 7789999999999876543322 222222221
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
...+|++++|+|++ .+.. +...+..+.++ |. |+++++||+|.....+..++ ...+-...+..
T Consensus 76 -~~~~D~ii~VvDa~-~l~r-~l~l~~ql~e~-g~----P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~p 137 (156)
T PF02421_consen 76 -SEKPDLIIVVVDAT-NLER-NLYLTLQLLEL-GI----PVVVVLNKMDEAERKGIEID----------AEKLSERLGVP 137 (156)
T ss_dssp -HTSSSEEEEEEEGG-GHHH-HHHHHHHHHHT-TS----SEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred -hcCCCEEEEECCCC-CHHH-HHHHHHHHHHc-CC----CEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCCC
Confidence 36799999999998 4432 23333444442 43 99999999998754111111 22222333433
Q ss_pred EEEEcCCCcccccchHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLV 204 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i 204 (352)
.+ +.||.++.++++|++.|
T Consensus 138 vi------~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VI------PVSARTGEGIDELKDAI 156 (156)
T ss_dssp EE------EEBTTTTBTHHHHHHHH
T ss_pred EE------EEEeCCCcCHHHHHhhC
Confidence 33 56778889999998865
No 9
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.82 E-value=2.6e-19 Score=149.26 Aligned_cols=132 Identities=28% Similarity=0.350 Sum_probs=99.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC---cHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---SEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~---~~~~~~~~ 93 (352)
....+|+|+|++|+|||||+|+|+|...+.... ..+.|..+..+...+ ++..++||||||+.+.... ...+...+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 345899999999999999999999987654432 223455555555555 7889999999999986421 12223333
Q ss_pred HHHHhcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 94 VKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..++. ..++|+++||..++ .+++..+...++.+...||..++.++++|+||+|...+
T Consensus 107 ~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 33332 13689999998777 57888999999999999999999999999999998755
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.82 E-value=6.1e-19 Score=152.83 Aligned_cols=177 Identities=20% Similarity=0.310 Sum_probs=119.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
...|+|+|++|+|||||+|.|+|..... .+....|+......+...++..+.++||||+.+.. ..+.+.+.....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~--vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee--cCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence 3689999999999999999999987632 23333444444444333245789999999998743 223344444555
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.+...+|++++|+|++..++..+...+..+... + .|+++|+||+|+.... ..+...+.. +. ...+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-~----~pvilVlNKiDl~~~~-~~l~~~~~~-----l~---~~~~- 144 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-K----TPVILVLNKIDLVKDK-EELLPLLEE-----LS---ELMD- 144 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-C----CCEEEEEECCcCCCCH-HHHHHHHHH-----HH---hhCC-
Confidence 566789999999999866777777666666532 2 2899999999998321 344444333 22 2111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
+....+.|+.++.++.+|++.+...++.+ ..+|..++
T Consensus 145 ----~~~i~~iSA~~~~gv~~L~~~L~~~l~~~-~~~y~~~~ 181 (292)
T PRK00089 145 ----FAEIVPISALKGDNVDELLDVIAKYLPEG-PPYYPEDQ 181 (292)
T ss_pred ----CCeEEEecCCCCCCHHHHHHHHHHhCCCC-CCCCCCCC
Confidence 22334678888999999999999988763 34566554
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=4.6e-19 Score=155.36 Aligned_cols=173 Identities=21% Similarity=0.232 Sum_probs=114.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+|+|++|+|||||+|.|+|..... .++...|+ ......+.+ ++.++.+|||||+..... .+...+.+...
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~i--vs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~ 126 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSI--VTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRCAW 126 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceee--ccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHHHH
Confidence 599999999999999999999886522 22222233 222223344 677899999999865321 23344444455
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.++.++|++++|+|....++..+..++..+... +. |.++|+||+|+... .+.+. ...+.....
T Consensus 127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~~----p~IlViNKiDl~~~---~~~~~---------~~~l~~~~~ 189 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-NI----VPIFLLNKIDIESK---YLNDI---------KAFLTENHP 189 (339)
T ss_pred HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-CC----CEEEEEEhhcCccc---cHHHH---------HHHHHhcCC
Confidence 556789999999998877777766666666543 22 67889999998633 22222 222222111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
+....++||.++.++++|++.+...++. +..+|+.++
T Consensus 190 ----~~~i~~iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~ 226 (339)
T PRK15494 190 ----DSLLFPISALSGKNIDGLLEYITSKAKI-SPWLYAEDD 226 (339)
T ss_pred ----CcEEEEEeccCccCHHHHHHHHHHhCCC-CCCCCCCCC
Confidence 1122367899999999999999998876 556677666
No 12
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=4.7e-18 Score=132.43 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=113.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH---HHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE---FVG 90 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~---~~~ 90 (352)
|.+...-|+++|++|+|||||||+|+|... ...+-++ +.|.....+. + +..+.+||.|||+....+.. .+.
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktP-GrTq~iNff~--~--~~~~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTP-GRTQLINFFE--V--DDELRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCC-CccceeEEEE--e--cCcEEEEeCCCcccccCCHHHHHHHH
Confidence 444567999999999999999999999663 2222222 2344333332 2 23377999999998776542 233
Q ss_pred HHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHH
Q 018636 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (352)
..+..++... ..+.++++++|+...+...|+..++++... +- |+++|+||+|.... ......+.. +.
T Consensus 95 ~~i~~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~i----~~~vv~tK~DKi~~--~~~~k~l~~-----v~ 161 (200)
T COG0218 95 KLIEEYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL-GI----PVIVVLTKADKLKK--SERNKQLNK-----VA 161 (200)
T ss_pred HHHHHHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CeEEEEEccccCCh--hHHHHHHHH-----HH
Confidence 4444444433 347889999999988889999999998875 43 89999999999976 444444443 33
Q ss_pred HHHHh-cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 171 EILQL-CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 171 ~~~~~-~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+.. ..+... ....|+..+.|+++|...|...+..
T Consensus 162 ~~l~~~~~~~~~----~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 162 EELKKPPPDDQW----VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHhcCCCCccce----EEEEecccccCHHHHHHHHHHHhhc
Confidence 22221 122210 1223445567899999988877643
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=151.24 Aligned_cols=186 Identities=22% Similarity=0.216 Sum_probs=126.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..++|+|||++|+|||||+|+|+|+...-..+..| .|.+.-...+.+ +++.+.++||.|+-.-..-.+.+...-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aG-TTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG-TTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCC-ccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 35899999999999999999999998744433333 233333334455 8999999999998653221111000000011
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+...++++++|+|++.+++..+...+.++.+. |. +++||+||||....+....+++... +...+...
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l- 323 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFL- 323 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHHHH-----HHHHhccc-
Confidence 1233578999999999999999999999988874 54 7999999999986532344444333 44433322
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
-|-...+.||.++.++..|++.+..+........-...+
T Consensus 324 ----~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~L 362 (444)
T COG1160 324 ----DFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLL 362 (444)
T ss_pred ----cCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHH
Confidence 234445779999999999999999988765544444433
No 14
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=2.6e-17 Score=146.05 Aligned_cols=177 Identities=18% Similarity=0.162 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
-|+|||.+|||||||||+|++... ..+..+.|+. .....+.+.+...++++||||+.........+...+.+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~---- 233 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK---- 233 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----
Confidence 799999999999999999998764 2344444443 33444444335679999999998654333333444443
Q ss_pred ccCCccEEEEEEecCCCC----C-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 100 AKDGIHAFLVVFSVTNRF----S-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~----~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....++++++|+|++ .+ . .....++..+......-..+|+++|+||+|+... ..+.+.+.. + ..
T Consensus 234 ~i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~-----l---~~ 302 (390)
T PRK12298 234 HLERCRVLLHLIDIA-PIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKA-----I---VE 302 (390)
T ss_pred HHHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHH-----H---HH
Confidence 345789999999986 22 1 2223344444432111112389999999998755 444444333 2 22
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (352)
..+.. ....+.||.++.++.+|++.|...++.. ..+|..++
T Consensus 303 ~~~~~----~~Vi~ISA~tg~GIdeLl~~I~~~L~~~-~~~~~~~~ 343 (390)
T PRK12298 303 ALGWE----GPVYLISAASGLGVKELCWDLMTFIEEN-PREEAEEA 343 (390)
T ss_pred HhCCC----CCEEEEECCCCcCHHHHHHHHHHHhhhC-cccCCccc
Confidence 21211 0123578888999999999999988763 34455444
No 15
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.77 E-value=3.3e-17 Score=129.84 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCc--ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.|+|+|++|+|||||+|.|+|... +.. ....+.|.........+..+..+.+|||||... +.....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPE-EKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchh-hhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHH
Confidence 689999999999999999998532 111 011223444444444442367899999999422 222233
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+.++|++++|+|+++.+.......+..+.. .+. .|+++++||+|+... ..+...... +...+...+.
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~ 138 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL 138 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc
Confidence 34568999999999985444444444444333 232 289999999998754 333222222 3333332110
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
. .....+.|+.++.+++++++.+..
T Consensus 139 ~---~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 139 A---DAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred C---CCcEEEEeCCCCcCHHHHHHHHhh
Confidence 0 012235688889999999887653
No 16
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=9.9e-17 Score=146.92 Aligned_cols=174 Identities=22% Similarity=0.246 Sum_probs=114.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|++|+|||||+|+|+|..........+ .|.......+.. ++..+.++||||+.........+........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g-tt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG-TTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC-ceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 45899999999999999999999987533333322 233333333334 6788999999998764332222111111112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+...+|++++|+|++.+++..+...+..+... +. |+++++||||+... ....+.... +...+....
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~~----~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-GR----ALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-CC----cEEEEEECccCCCH--HHHHHHHHH-----HHHhccccc
Confidence 2344678999999999988888888777666542 43 89999999999854 334433332 332222211
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+.+..+.||.++.++.++++.+......
T Consensus 318 -----~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 318 -----YAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred -----CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2234467899999999999998887654
No 17
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.76 E-value=2.1e-17 Score=122.76 Aligned_cols=116 Identities=26% Similarity=0.344 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|.+|+|||||+|+|+|......+... ..|.......+.+ ++..+.++||||+.+....... ...+..++...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~-~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIP-GTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDND-GKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSST-TSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccc-cceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHH-HHHHHHHHHHH
Confidence 6999999999999999999997543333332 2344443333444 7888889999999875432221 12233333333
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk 146 (352)
..+|+++||++++...+..+...++.+. .+. |+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~~----~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK--NKK----PIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH--TTS----EEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh--cCC----CEEEEEcC
Confidence 6889999999987544455566666663 232 99999997
No 18
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=3.3e-17 Score=130.13 Aligned_cols=165 Identities=24% Similarity=0.281 Sum_probs=102.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+++|.+|+|||||+|.|+|....... ....++...........+..+.++||||+....... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc--CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 378999999999999999999998652221 222233222222233245778899999988643221 122333333
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+..+|++++|++++..++......+..+... +. |+++|+||+|+.... ..+.+.+.. +. ....
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~~----~~iiv~nK~Dl~~~~-~~~~~~~~~-----~~---~~~~- 142 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-KT----PVILVLNKIDLVKDK-EDLLPLLEK-----LK---ELGP- 142 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-CC----CEEEEEEchhccccH-HHHHHHHHH-----HH---hccC-
Confidence 445788999999999855555555555555442 22 899999999987321 344433332 22 1111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
+......|+.++.++.++++.+.+.
T Consensus 143 ----~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 143 ----FAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ----CCceEEEEeccCCChHHHHHHHHhh
Confidence 1122356777788999999887654
No 19
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.76 E-value=3.4e-17 Score=130.60 Aligned_cols=164 Identities=20% Similarity=0.186 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc-eEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+|+|++|||||||+|.|++.... .+...+ .|....+..+.+ .+. .+.++||||+.+.......+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~~~-~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---- 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPF-TTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR---- 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccCCCc-cccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence 5899999999999999999986541 111111 233333333444 444 88999999986432111112222221
Q ss_pred ccCCccEEEEEEecCCC-CCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc-
Q 018636 100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~-~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 176 (352)
.+..+|++++|+|++.. -+... ..++..+..........|+++|+||+|+... ....+.+.. +....
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~--------~~~~~~ 144 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKE--------LLKELW 144 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHHH--------HHhhCC
Confidence 22468999999999843 12222 2344444443211112489999999998765 333333222 23221
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
...+ ...|++++.++.++++.+.+.
T Consensus 145 ~~~~------~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPV------FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCE------EEEecCCCCCHHHHHHHHHhh
Confidence 2222 246788889999999887654
No 20
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=8.3e-17 Score=128.72 Aligned_cols=171 Identities=22% Similarity=0.247 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
++|+++|.+|+|||||+|+|++.......... +.+.......+.. .+..+.+|||||+.+.......+..........
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIA-GTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCC-CCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 68999999999999999999987642222221 1222222222333 567789999999876532111111111111122
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
.+.++|++++|+|++.+.+......+..+.. .+ .|+++++||+|+.......++.+... +...+.....
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~----~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~- 149 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILE-EG----KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY- 149 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-cC----CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC-
Confidence 3468899999999986666655554444332 23 28999999999875411222322222 2222211111
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
....+.|++.+.++.++++.+.++
T Consensus 150 ----~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 ----APIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ----CceEEEeccCCCCHHHHHHHHHHh
Confidence 223356888889999998887654
No 21
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.8e-16 Score=138.43 Aligned_cols=163 Identities=22% Similarity=0.230 Sum_probs=113.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+.+|+++|++|+|||||+|+|++++. +.++..+.|+...+ ..+.+ +|..+.++||.|+-++...-+. .-..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~---iGIe 288 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVER---IGIE 288 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHH---HHHH
Confidence 4568999999999999999999999987 44444444554444 44455 8999999999999875432222 2222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..+.....+|.++||+|.+..++..+...+. .... .+|+++|+||.|+... ...... ..
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~~~---~~~~i~v~NK~DL~~~--~~~~~~-------------~~ 347 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE---LLPK---KKPIIVVLNKADLVSK--IELESE-------------KL 347 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH---hccc---CCCEEEEEechhcccc--cccchh-------------hc
Confidence 2333446899999999999667888777777 1111 2289999999999876 221111 11
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
..+. .....|++++.++..|.+.|...+...
T Consensus 348 ~~~~-----~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 348 ANGD-----AIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCCC-----ceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 1111 123568888999999999999988664
No 22
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=1.7e-16 Score=145.30 Aligned_cols=176 Identities=24% Similarity=0.241 Sum_probs=113.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+++|.+|+|||||+|.|+|..........+ .|.......+.. ++..+.+|||||+.........+........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~g-tt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAG-TTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCC-ceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 34799999999999999999999986432222222 233333333344 6778999999998764322211111111112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..++..+|++++|+|++++++..+...+..+... +. |+++|+||+|+... ...++++... +...+...+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~~----~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~~ 317 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-GK----ALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFLD 317 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-CC----cEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccCC
Confidence 2345688999999999988888887776665542 33 89999999999722 1344443333 333322222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
. ....++||.++.++.++++.+.......
T Consensus 318 ~-----~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 318 F-----APIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred C-----CceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 1 2334679999999999999998876553
No 23
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=3.1e-16 Score=128.05 Aligned_cols=171 Identities=15% Similarity=0.247 Sum_probs=103.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~--~~~~~ 93 (352)
+...+|+|+|.+|+|||||+|.|++.. .....+.. +.|.....+. .+..+.||||||+......... ....+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~-~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP-GRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC-CceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 355799999999999999999999864 21111111 2233322221 2467899999998753322211 11122
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..........++++++|++.+.+.+..+...+.++.. .+. |+++++||+|.... ...+..... +...+
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~~----~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~l 164 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YGI----PVLIVLTKADKLKK--GERKKQLKK-----VRKAL 164 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cCC----cEEEEEECcccCCH--HHHHHHHHH-----HHHHH
Confidence 2222222345678888888776666666555555543 232 88999999999865 334333332 33333
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
......+ .++|+.++.++.++++.+.+++.+
T Consensus 165 ~~~~~~~------~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 165 KFGDDEV------ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HhcCCce------EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 2222222 256888899999999999887643
No 24
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.74 E-value=1.2e-16 Score=127.07 Aligned_cols=163 Identities=22% Similarity=0.181 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~-~~~~~~~~~~~ 98 (352)
++|+++|.+|+|||||+|.|++...... .. ...|.........+ .+..+.+|||||+.+...... .+........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~-~~-~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~- 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA-PY-PFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITAL- 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC-CC-CCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHH-
Confidence 3799999999999999999998764211 11 11233333333333 567889999999865322111 1111111111
Q ss_pred cccCCccEEEEEEecCCCCC---HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 99 MAKDGIHAFLVVFSVTNRFS---QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....|++++|+|+++..+ .....++..++..+. ..|+++|+||+|.... ..+.. ... +...
T Consensus 77 --~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~-~~~--------~~~~ 140 (168)
T cd01897 77 --AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE-IEE--------EEEL 140 (168)
T ss_pred --HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH-HHH--------hhhh
Confidence 123588999999884322 223345555554432 2399999999999755 33332 111 1111
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.... ..++|++++.++.++++.+.+.+
T Consensus 141 ~~~~------~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 EGEE------VLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCc------eEEEEecccCCHHHHHHHHHHHh
Confidence 1111 23678999999999999887754
No 25
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=4.7e-16 Score=135.38 Aligned_cols=167 Identities=17% Similarity=0.130 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCc-ceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+|||.+|||||||||+|++... . .+..+. |.......+.+.++..++++||||+.+.......+...+.+.
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~-~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrh--- 233 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKP-K--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKH--- 233 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCC-c--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHH---
Confidence 689999999999999999998653 1 223333 344444444554567899999999976443333344444333
Q ss_pred ccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHH-HHhcccCChhHHHHHHhcC
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-DFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~ 177 (352)
+..++++++|+|+++.-+..+. .+...+......-..+|+++|+||+|+... .... +... ......+
T Consensus 234 -ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~~~--------~~~~~~~ 302 (335)
T PRK12299 234 -IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKRAA--------LELAALG 302 (335)
T ss_pred -hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHHHH--------HHHHhcC
Confidence 3578999999999833233333 333444432111123489999999998754 3222 1111 1122222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+ .++||.++.++.+|++.+.+.+..
T Consensus 303 ~~i------~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 303 GPV------FLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCE------EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 222 356888899999999999887754
No 26
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=5.8e-17 Score=127.40 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=100.1
Q ss_pred EEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccC
Q 018636 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (352)
Q Consensus 23 ~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (352)
+|+|.+|+|||||+|.|++........ ..+.|.........+ .+..+.++||||+.+... .+...+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 589999999999999999875322212 122343444444444 678899999999987432 223333333334456
Q ss_pred CccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEE
Q 018636 103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (352)
Q Consensus 103 ~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 182 (352)
++|++++|++....++..+...+.++... + .|+++|+||+|.... ..... .+...+.
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~~~------------~~~~~~~---- 132 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDEAA------------EFYSLGF---- 132 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHHHH------------HHHhcCC----
Confidence 78999999999866666666555655542 3 289999999998765 22211 1111121
Q ss_pred EcCCCcccccchHHHHHHHHHHHHH
Q 018636 183 FDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 183 ~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
......|+.++.++.++++.+.+.
T Consensus 133 -~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 133 -GEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred -CCeEEEecccCCCHHHHHHHHHhh
Confidence 122356788889999999987653
No 27
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=4.1e-16 Score=143.32 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=110.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC- 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~- 96 (352)
...+|+|+|++|+|||||+|.|+|.......+..+ .|.......+.+ ++..+.+|||||+......... .+.+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~g-tT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~-~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAG-TTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASG-HEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-ccCCcceEEEEE-CCEEEEEEECCCccccccccch-HHHHHHHH
Confidence 34899999999999999999999986422222222 233333333444 6788899999998542211110 1111111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...++.++|++++|+|++++.+..+...+..+.. .+. |+++|+||+|+... ......... +...+...
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-~~~----piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~~ 354 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-AGR----ALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQV 354 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECcccCCh--hHHHHHHHH-----HHHhcccC
Confidence 1123468999999999998888887776665544 232 89999999999754 222111111 21111111
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~ 214 (352)
. +.+...+||+++.++.+|++.+.+.+......
T Consensus 355 ~-----~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 355 P-----WAPRVNISAKTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred C-----CCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 1 11223579999999999999999888764433
No 28
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.73 E-value=9.5e-17 Score=131.27 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEEee--------------------------CC----
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLK--------------------------DG---- 68 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~--------------------------~~---- 68 (352)
.+|+++|++|+|||||+.+|++.. .........+.+..+.+..+.+. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 379999999999999999998762 21111222223333333322221 02
Q ss_pred --ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-CCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 69 --QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 69 --~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
..+.+|||||. ..+...+..+...+|++++|+|++.. ........+..+.. .+. .|+++++|
T Consensus 81 ~~~~i~~iDtPG~-----------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGH-----------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCCh-----------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 67899999993 22333444444678999999999842 33333444444433 232 27899999
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|+|+... ..+...+.. +...+..... ......+.|+.++.++.+|++.+.+.++.
T Consensus 146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~---~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 146 KIDLVKE--EQALENYEQ-----IKKFVKGTIA---ENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chhccCH--HHHHHHHHH-----HHHHHhcccc---CCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 9999764 444433333 4433332110 01123467889999999999998876643
No 29
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.73 E-value=1.5e-16 Score=127.68 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=95.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
....+|+|+|.+|+|||||+|.|++.. .....+. .+.|..+..+. . + ..+.+|||||+......... ...+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~-~~~t~~~~~~~--~-~-~~~~liDtpG~~~~~~~~~~-~~~~~~ 89 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT-PGRTQLINFFE--V-N-DGFRLVDLPGYGYAKVSKEE-KEKWQK 89 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCcceEEEEEE--e-C-CcEEEEeCCCCccccCChhH-HHHHHH
Confidence 456899999999999999999999875 2111111 12233333322 2 2 46889999998765432221 122221
Q ss_pred HH---hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 96 CL---GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~---~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.+ ......++++++|+|++.+++..+...+..+.. .+. |+++++||+|.... ...+..+.. ++..
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-~~~----pviiv~nK~D~~~~--~~~~~~~~~-----i~~~ 157 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE-RGI----PVLIVLTKADKLKK--SELNKQLKK-----IKKA 157 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECcccCCH--HHHHHHHHH-----HHHH
Confidence 11 112245789999999987788888877666654 233 89999999999755 444444443 4444
Q ss_pred HHhcCCcEEEEcCCCcccccchHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQV 197 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~ 197 (352)
+...+.. ....++||+++.|+
T Consensus 158 l~~~~~~----~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 158 LKKDADD----PSVQLFSSLKKTGI 178 (179)
T ss_pred HhhccCC----CceEEEECCCCCCC
Confidence 4432211 02234566665553
No 30
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.73 E-value=1.6e-16 Score=139.53 Aligned_cols=162 Identities=22% Similarity=0.170 Sum_probs=101.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|+|+|...+.. .....|.+.....+.+.++..+.++||||+.... + ..+.+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~-~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-P-HELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCcccccC-C-HHHHHHHHHHH
Confidence 347999999999999999999999864221 1122344444445555467889999999984321 1 12233343322
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+..+|++++|+|++++.+..+.. +...+..+ +. ...|+++|+||+|+... ..+.. + ..
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~~---------~---~~-- 324 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIER---------L---EE-- 324 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHHH---------H---Hh--
Confidence 2346889999999998555444432 23344433 21 12389999999998754 22211 1 00
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.. .....+||+++.++.+|++.|.+.
T Consensus 325 ~~-----~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 GY-----PEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CC-----CCEEEEEccCCCCHHHHHHHHHhh
Confidence 10 112357889999999999988654
No 31
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=2e-16 Score=124.32 Aligned_cols=156 Identities=23% Similarity=0.247 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+.+|+++|++|+|||||+|.|++......... .+.+.......+.+ .+..+.++||||+.+..... .........
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~---~~~~~~~~~ 75 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDI-AGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEI---EKIGIERAR 75 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCC-CCCccceEEEEEEe-CCEEEEEEECCCcCCCcchH---HHHHHHHHH
Confidence 36899999999999999999998764222222 12233333333344 57788999999987753221 111111222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+..+|++++|+|++.+.+..+...+.. ..+. |+++|+||+|.... ... .....+.
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~----~vi~v~nK~D~~~~--~~~--------------~~~~~~~ 132 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL---PADK----PIIVVLNKSDLLPD--SEL--------------LSLLAGK 132 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh---hcCC----CEEEEEEchhcCCc--ccc--------------ccccCCC
Confidence 33458899999999996666655554443 2232 89999999998865 221 0011122
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.++ ..|+.++.++.+|++.|...+
T Consensus 133 ~~~------~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 133 PII------AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ceE------EEECCCCCCHHHHHHHHHHhh
Confidence 232 457778899999999887653
No 32
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.72 E-value=5.2e-17 Score=131.37 Aligned_cols=167 Identities=19% Similarity=0.279 Sum_probs=110.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccc----------------cCCCCCcceeeEeEEEE-eeCCceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA----------------SAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~-~~~~~~~~lvDtpG~~~ 81 (352)
.++|+++|+.|+|||||++.|++...... .......|.......+. ...+..++++||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 47999999999999999999985442100 00112344444444444 12788999999999432
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
+......+...+|++++|+|+...+.......+..+... +. |+++++||+|.. . ..+.+.+
T Consensus 83 -----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~~----p~ivvlNK~D~~-~--~~~~~~~ 143 (188)
T PF00009_consen 83 -----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-GI----PIIVVLNKMDLI-E--KELEEII 143 (188)
T ss_dssp -----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS-H--HHHHHHH
T ss_pred -----------eeecccceecccccceeeeeccccccccccccccccccc-cc----ceEEeeeeccch-h--hhHHHHH
Confidence 222233334578999999999878888888888887664 43 899999999998 3 4555555
Q ss_pred cccCChhHH-HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 162 GHECPKPLK-EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 162 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+ +. .++...+..-..+-+..+.|+.++.++.+|++.+.+.++
T Consensus 144 ~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 144 EE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 54 44 344433221000011236788899999999999988764
No 33
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.72 E-value=1.8e-16 Score=130.17 Aligned_cols=162 Identities=24% Similarity=0.209 Sum_probs=97.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|||||||+|.|++....... ....|.......+.+.+...+.+|||||+.+... ......+...+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~- 115 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTL- 115 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHH-
Confidence 479999999999999999999987642211 1122333333344443344889999999865321 11222232222
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|++.+.+.... .+...+....... .|+++|+||+|+... .... . ......
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~----~--------~~~~~~ 179 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE----E--------RLEAGR 179 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH----H--------HhhcCC
Confidence 234578999999999855444333 3334444332222 389999999999765 2222 1 111111
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.. ....|+.++.++.++++.+...
T Consensus 180 ~~------~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 180 PD------AVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred Cc------eEEEEcCCCCCHHHHHHHHHhh
Confidence 12 2356888899999999887653
No 34
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=2.1e-16 Score=145.23 Aligned_cols=164 Identities=22% Similarity=0.208 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|||++|+|||||+|.|+|......... .++|.........+ .+..+.+|||||+... ...+...+....
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~-~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~ 111 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDV-PGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQA 111 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCC-CCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHH
Confidence 346899999999999999999998764222222 23455544444555 6788999999998632 122334455445
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..++..+|++++|+|++++.+..+..+..++.. .+ .|+++|+||+|+... ... ....... +
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~-~~----~piilV~NK~Dl~~~--~~~-----------~~~~~~~-g 172 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRR-SG----KPVILAANKVDDERG--EAD-----------AAALWSL-G 172 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCcc--chh-----------hHHHHhc-C
Confidence 556678999999999997777777666666654 23 299999999998643 110 1111111 1
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....++||.++.++.+|++.+...+..
T Consensus 173 -----~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 173 -----LGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred -----CCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 1111357899999999999998876643
No 35
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.72 E-value=3.9e-16 Score=135.83 Aligned_cols=165 Identities=18% Similarity=0.194 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+|||.+|||||||+|.|++.... ....+ .|.......+.+.++..+.++||||+.+.......+...+.+.
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~---va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh--- 232 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPK---IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKH--- 232 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCcc---ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHH---
Confidence 6899999999999999999986531 22222 2334444445553348899999999976433322334444333
Q ss_pred ccCCccEEEEEEecCCC---CCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 100 AKDGIHAFLVVFSVTNR---FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...++++++|+|++.. -...+. .+...+......-..+|++||+||+|+... ..+++..+. +...
T Consensus 233 -ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~--------l~~~ 301 (329)
T TIGR02729 233 -IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKE--------LKKA 301 (329)
T ss_pred -HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHH--------HHHH
Confidence 3478999999998832 111222 233333332111123489999999999765 444433332 2222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..+ .++||.++.++.+|++.+.+.+
T Consensus 302 ~~~~v------i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPV------FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcE------EEEEccCCcCHHHHHHHHHHHh
Confidence 22222 3568888999999999987764
No 36
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=1.7e-16 Score=145.31 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=112.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|||++|+|||||+|.|+|........ ..++|.........+ .+..+.+|||||+... ...+...+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~-~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSD-TPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecC-CCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 48999999999999999999876422212 233455555555666 7888999999998642 233445555555566
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
+..+|++++|+|+..+++..+.....++... +. |+++|+||+|.... ... ..++.. .+
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~~----piilVvNK~D~~~~--~~~-----------~~~~~~-lg--- 133 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-GK----PVILVANKIDGKKE--DAV-----------AAEFYS-LG--- 133 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-CC----CEEEEEECccCCcc--ccc-----------HHHHHh-cC---
Confidence 6789999999999877888888777777653 43 89999999998754 211 111111 11
Q ss_pred EEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+......||.++.++.+|++.+...+..
T Consensus 134 --~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 134 --FGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred --CCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 1223356888899999999998877643
No 37
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=8.6e-16 Score=138.65 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+|||.+|||||||||.|++.... .+..+.|+ ......+.+ .+..++|+||||+.........+...+.+
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpk---IadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLr---- 232 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPK---IADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLR---- 232 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCcc---ccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHH----
Confidence 7999999999999999999987541 22233333 333444444 66789999999997643222233333333
Q ss_pred ccCCccEEEEEEecCCC----CCHHHHH-HHHHHHHhhc---------ccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 100 AKDGIHAFLVVFSVTNR----FSQEEET-AVHRLPNLFG---------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~----~~~~~~~-~l~~~~~~~~---------~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
.+..++++++|+|++.. -...+.. +...+..... .-..+|.+||+||+|+... ..+.+.+..
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l~~-- 308 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFVRP-- 308 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHHHH--
Confidence 33578999999998721 0111222 2222322211 1123499999999998754 333333221
Q ss_pred ChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+...+..+ .++|+.++.++.+|+..+.+++..
T Consensus 309 ------~l~~~g~~V------f~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 309 ------ELEARGWPV------FEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred ------HHHHcCCeE------EEEECCCCCCHHHHHHHHHHHHHh
Confidence 222222222 356888899999999999888765
No 38
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1e-16 Score=130.13 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=111.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|.|+|.+|+|||||||+|++....+. +.-++++....+.....++..+++|||||+++....+.+....+...+
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l- 115 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL- 115 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh-
Confidence 36888999999999999999996554222 212222222222222337788999999999997666655444444443
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc----------chhcHHHHhcccCChh
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----------HEKTLEDFLGHECPKP 168 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~----------~~~~l~~~l~~~~~~~ 168 (352)
+..|.++++++++++.-+.+..+++-+...... +++++++|.+|...+ +...+.+++.. .-..
T Consensus 116 ---~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k~~~ 188 (296)
T COG3596 116 ---PKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-KAEA 188 (296)
T ss_pred ---hhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-HHHH
Confidence 577899999999867666666666666554442 289999999997644 12233444433 1111
Q ss_pred HHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
+.+++.. ..+++..+....-++..|+..+...++..
T Consensus 189 ~~~~~q~-------V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 189 LGRLFQE-------VKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHhh-------cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 2223322 33333445566788999999888887753
No 39
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.71 E-value=4e-16 Score=126.59 Aligned_cols=164 Identities=21% Similarity=0.204 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCC--------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 86 (352)
+|+|+|.+|+|||||+|.|++......... ..+.+.........+ .+..+.+|||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 489999999999999999988754221100 011233333333334 4678899999996541
Q ss_pred HHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCC
Q 018636 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (352)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~ 166 (352)
.. ....++..+|++++|+|+....+......+..+.. .+ .|+++++||+|.... ..+......
T Consensus 76 ---~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 76 ---SS----EVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-GG----LPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred ---HH----HHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CC----CCeEEEEECCCCcch--hcHHHHHHH---
Confidence 11 12223347899999999986666655555555543 22 289999999999864 344333332
Q ss_pred hhHHHHHHhcCC-----cE---EEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 167 KPLKEILQLCDN-----RC---VLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 167 ~~~~~~~~~~~~-----~~---~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+...+...+. ++ ....+..+.|+.++.++.++++.+...+
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 3333332211 00 0112334678889999999999887765
No 40
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=4.3e-16 Score=142.70 Aligned_cols=158 Identities=19% Similarity=0.206 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|++|+|||||+|.|+|........ ..++|.........+ ++..+.+|||||+.+.. ..+...+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 479999999999999999999876422222 223454555555555 67889999999998622 1234445444555
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
++..+|++++|+|++++++..+.....++... +. |+++|+||+|..... ....+ +.. .+
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~~----piilv~NK~D~~~~~-~~~~~------------~~~-lg-- 135 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-NK----PVILVVNKVDGPDEE-ADAYE------------FYS-LG-- 135 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----cEEEEEECccCccch-hhHHH------------HHh-cC--
Confidence 56789999999999877888877777777654 33 899999999965320 11111 111 11
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+....+.|+.++.++.+|++.+..
T Consensus 136 ---~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 136 ---LGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ---CCCCEEEEeeCCCCHHHHHHHHHh
Confidence 112335688889999999988876
No 41
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.2e-15 Score=136.14 Aligned_cols=165 Identities=19% Similarity=0.156 Sum_probs=102.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCc-ceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+|||.+|||||||||+|++...- ....+. |.......+.+.++..++++||||+.........+...+.+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k---Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrh--- 233 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK---IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRH--- 233 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc---cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHH---
Confidence 8999999999999999999987631 122222 334444445553478899999999976332222333443333
Q ss_pred ccCCccEEEEEEecCCC---CCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 100 AKDGIHAFLVVFSVTNR---FSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...++++++|+|+++. -... ...+...+......-..+|.+||+||+|+... ...++ .+...
T Consensus 234 -ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~l~------------~l~~~ 299 (424)
T PRK12297 234 -IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EENLE------------EFKEK 299 (424)
T ss_pred -HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHHHH------------HHHHH
Confidence 3478999999999721 1112 22344444443221123499999999997432 11122 12222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
.+..+ .++||.++.++.+|++.+.+.+...
T Consensus 300 l~~~i------~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 300 LGPKV------FPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred hCCcE------EEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 22222 3568888999999999999888653
No 42
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.71 E-value=9.8e-16 Score=124.65 Aligned_cols=171 Identities=19% Similarity=0.159 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCC-CCC--cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSG--VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|++|+|||||+|+|+|......+.. .+. .+.... .+.......+++|||||+.+....... +...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~----~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDD----YLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCCHHH----HHHH
Confidence 5899999999999999999999654221111 111 111111 111112457899999999875433222 2221
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchh-------cHHHHhcccCChhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-------TLEDFLGHECPKPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~-------~l~~~l~~~~~~~~ 169 (352)
..+.+.|++++|.+ .+++..+..++..+... +. ++++|+||+|....... ..++++.. ....+
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~ 145 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC 145 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence 23457888888753 47899999998888775 54 89999999998643110 12233332 11123
Q ss_pred HHHHHh---cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 170 KEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 170 ~~~~~~---~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+.. ....++..+.... .+.++..|.+.+...++.
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhH
Confidence 333332 2234555443321 246777777777666654
No 43
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.71 E-value=1.9e-16 Score=125.82 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=90.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccccc--CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+|+|+|++|+|||||+|.|++......+ ......|.......+.+ ++..+.++||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 4899999999999999999875321000 11112233333344444 678899999999643 111222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+.++|++++|+|+++.-+. .....++..++.. ....|+++++||+|.... ...++.... +.......
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~ 139 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEI 139 (167)
T ss_pred HHhCCCCEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHH-----hccccccc
Confidence 345688999999998732111 1111222222211 112399999999998654 322221111 11111111
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
+... ....+.|++++.++.++++++.
T Consensus 140 ~~~~---~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 140 GRRD---CLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred cCCc---eEEEEeeCCCCcCHHHHHHHHh
Confidence 1111 0223678899999999998874
No 44
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.70 E-value=5.6e-16 Score=123.27 Aligned_cols=161 Identities=15% Similarity=0.130 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.|+|+|.+|+|||||+|.|++..... ....+.|........... .+..+.++||||... +.....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc--ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence 69999999999999999999765411 112233444333444432 367889999999533 111122
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH-HhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~ 177 (352)
..+..+|++++|+|+++.........+..+.. .+. |+++|+||+|+.......+...+.. +.... ...+
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~~----p~ivv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 138 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKA-ANV----PFIVALNKIDKPNANPERVKNELSE-----LGLQGEDEWG 138 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cCC----CEEEEEEceecccccHHHHHHHHHH-----hhcccccccc
Confidence 23467899999999985555555555555443 232 8999999999874411122222221 11000 0111
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+ ...+.|+.++.++.+|++.+....
T Consensus 139 ~~~----~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 139 GDV----QIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred CcC----cEEEeecccCCCHHHHHHHHHHhh
Confidence 111 223668888999999999887764
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=2e-15 Score=119.66 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|..|+|||||++.+.+..... ....+.........+.+ ++ ..+.++||||.. .+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~-----------~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE--RQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQE-----------RFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc--cCCCccceEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHHH
Confidence 4799999999999999999998654311 11111222233333444 33 367899999932 22223
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|+++.-+-.. ..++..+........ |+++|.||+|+........++ ...+...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNV--VLLLIGNKCDLEEQREVLFEE---------ACTLAEK 137 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCC--cEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 3334568899999999984333222 345555544322223 899999999986441111111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.+...+ .++|++++.++.++++.+.+
T Consensus 138 ~~~~~~-----~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 138 NGMLAV-----LETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred cCCcEE-----EEEECCCCCCHHHHHHHHHH
Confidence 222122 25788889999999998765
No 46
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=5.1e-16 Score=124.05 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=91.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+++|++|+|||||++.|++.... ....|.......+.+ ++..+.+|||||... +...
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-----~~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~ 74 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-----TISPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LRPY 74 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-----CcCCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 44589999999999999999999987431 111222222333344 567889999999532 1222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHH-HHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~-~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+.++|++++|+|++++-+-.+ ...+..+ ...... ..|+++|.||+|+... ...++ +...+.
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~--~~~~~---------~~~~~~ 141 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLPGA--LSEEE---------IREALE 141 (173)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccccC--CCHHH---------HHHHhC
Confidence 2334568999999999984322211 1222222 111111 2399999999998654 22221 111221
Q ss_pred hc---CCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 175 LC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 175 ~~---~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.. ...+ ....+||.++.++.++++++.
T Consensus 142 ~~~~~~~~~----~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 142 LDKISSHHW----RIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ccccCCCce----EEEeccCCCCcCHHHHHHHHh
Confidence 10 1111 123678899999999998764
No 47
>PRK04213 GTP-binding protein; Provisional
Probab=99.70 E-value=1.7e-15 Score=124.19 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=96.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH-
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK- 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~- 95 (352)
....+|+++|.+|+|||||+|.|+|... .....+ ++|.... .+.+ + .+.+|||||++..........+.+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~-~~t~~~~--~~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRP-GVTRKPN--HYDW--G-DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCC-ceeeCce--EEee--c-ceEEEeCCccccccccCHHHHHHHHHH
Confidence 3457999999999999999999998763 222222 2232221 2222 2 68899999986544332222223322
Q ss_pred ---HHhcccCCccEEEEEEecCCCCC-----------HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 96 ---CLGMAKDGIHAFLVVFSVTNRFS-----------QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 96 ---~~~~~~~~~~~~l~v~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
++......++++++|+|.+.... ..+...+..+.. .+ .|+++|+||+|+... . .+..
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~--~~~~ 150 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-LG----IPPIVAVNKMDKIKN--R--DEVL 150 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-cC----CCeEEEEECccccCc--H--HHHH
Confidence 22223346789999998862111 122233333332 22 289999999998654 2 1111
Q ss_pred cccCChhHHHHHHhcCCcEEEE-cCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 162 GHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. +...+... ..+..+ ....++||.++ +++++++.+.+.+..
T Consensus 151 ~~-----~~~~~~~~-~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 151 DE-----IAERLGLY-PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HH-----HHHHhcCC-ccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 11 22112110 011001 12346799999 999999999887654
No 48
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=2.1e-15 Score=145.06 Aligned_cols=174 Identities=18% Similarity=0.201 Sum_probs=110.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC- 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~- 96 (352)
...+|+|+|++|+|||||+|.|++.......... +.|.......+.+ ++..+.+|||||+.......+ ..+....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~-gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~--~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA-GTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLT--GAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCC-CCCcCcceeEEEE-CCCEEEEEECCCcccCcccch--hHHHHHHH
Confidence 3479999999999999999999998642221222 2233332333344 778889999999864322211 1111111
Q ss_pred -HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 -LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 -~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...++..+|++++|+|++.+.+..+...+..+... +. |+++|+||||+... ...+.+... +...+..
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-~~----piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~ 592 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-GR----ALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDR 592 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEEchhcCCh--hHHHHHHHH-----HHHhccC
Confidence 12345789999999999988888887766655432 32 89999999999754 222211111 2111111
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcC
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~ 212 (352)
. .+....+.||+++.++.+|++.+.+......
T Consensus 593 ~-----~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 593 V-----TWARRVNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred C-----CCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 1 1122345799999999999999999876533
No 49
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=1.2e-15 Score=129.91 Aligned_cols=153 Identities=22% Similarity=0.302 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCC------CCCcceeeEeEEEEe-eCC--ceEEEEeCCCCCCCCCCcHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGSEFV 89 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~~~lvDtpG~~~~~~~~~~~ 89 (352)
..+|+|+|.+|+|||||+|+|++......... ....|.........+ .++ ..++|||||||++.... ...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~-~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINN-SDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccc-hhh
Confidence 47999999999999999999998876433211 112233232222222 134 36899999999886432 222
Q ss_pred HHHHHHHH------------------hcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 90 GKEIVKCL------------------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 90 ~~~~~~~~------------------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
...+..++ ......+|+++|+++.+ .+++..+...++.+.. .+ |+++|+||+|..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~v--~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----RV--NIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----cC--CEEEEEECCCcC
Confidence 23222211 01123589999999887 4677777777776653 22 899999999998
Q ss_pred CcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcC
Q 018636 151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185 (352)
Q Consensus 151 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (352)
.. ..+..+... +.+.+...+..++.|..
T Consensus 157 ~~--~e~~~~k~~-----i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 157 TP--EELKEFKQR-----IMEDIEEHNIKIYKFPE 184 (276)
T ss_pred CH--HHHHHHHHH-----HHHHHHHcCCceECCCC
Confidence 66 566655555 77777777777776654
No 50
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.69 E-value=1.5e-15 Score=122.51 Aligned_cols=118 Identities=18% Similarity=0.230 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
..+|+++|+.++|||||+++|++...... .....+.|.......+.+ .+..++++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~---- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHA---- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHH----
Confidence 47899999999999999999986411000 001223344444444444 67789999999953
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+......+...+|++++|+|+...+...+...+..+... +.. ++++++||+|+...
T Consensus 77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~ 133 (195)
T cd01884 77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD 133 (195)
T ss_pred -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc
Confidence 2333334444688999999999877778777777776653 431 47788999998744
No 51
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.69 E-value=1.1e-15 Score=120.93 Aligned_cols=160 Identities=15% Similarity=0.125 Sum_probs=92.6
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhccc
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
|+++|..|+|||||++.+.+... ......|.......+.. .+..+.+|||||.... .......+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~----~~~~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS----LESVVPTTGFNSVAIPT-QDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC----cccccccCCcceEEEee-CCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 79999999999999999997643 11111222222222233 4667899999995432 11122345
Q ss_pred CCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 102 DGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
.++|++++|+|.+++.+-. .+.++..+... ....|+++|.||.|+... ....+..... .+..+....+..+
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~---~~~~piilv~NK~Dl~~~--~~~~~i~~~~---~~~~~~~~~~~~~ 137 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPLARQELHQLLQH---PPDLPLVVLANKQDLPAA--RSVQEIHKEL---ELEPIARGRRWIL 137 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHhC---CCCCcEEEEEeCcCCcCC--CCHHHHHHHh---CChhhcCCCceEE
Confidence 6889999999988433211 12222222211 123399999999998755 3333322110 0122222223333
Q ss_pred EEEcCCCcccccchHHHHHHHHHHH
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
+..+.....|+.++.++.++++.+.
T Consensus 138 ~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 138 QGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EEeeecCCCChhHHHHHHHHHHHHh
Confidence 3334555678888999999988654
No 52
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.69 E-value=5e-16 Score=124.21 Aligned_cols=159 Identities=18% Similarity=0.128 Sum_probs=92.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+..+|+|+|++|+|||||++.|.|.......+ |.......+.+ ++..+.++||||... +....
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~-----t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~ 75 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITP-----TQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPYW 75 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCC-----CCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 45899999999999999999999875411112 22222233344 577889999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|+++.-+-.. ...+..+..... ....|+++++||+|.... ...+++... ++ +. ..
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~~-~~ 145 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA--APAEEIAEA-----LN-LH-DL 145 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC--CCHHHHHHH-----cC-Cc-cc
Confidence 334468899999999873211111 112211111110 112389999999998754 333333222 11 00 01
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+.. ...+.||+++.++.++++++.+
T Consensus 146 ~~~~~---~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 146 RDRTW---HIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCeE---EEEEeECCCCCCHHHHHHHHhc
Confidence 11111 1136789999999999998753
No 53
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.68 E-value=7.5e-16 Score=122.54 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|..|+|||||++.+.+... .. ...|.......+.+ .+..+.++||||.... .......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~----~~-~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF----MQ-PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC----CC-cCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence 589999999999999999998643 11 22233333333444 6778899999996432 1112223
Q ss_pred cCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh-cCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-CDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 178 (352)
+.++|++++|+|++++-+-.+ ..++..+..... ....|++|+.||.|+... ...++.... + .+... +..
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~-~~~~~~~~~ 134 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA--LSVEEMTEL-----L-SLHKLCCGR 134 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC--CCHHHHHHH-----h-CCccccCCC
Confidence 468899999999983322111 122222221111 011389999999998644 222222111 0 01111 111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+.+ ..+||+++.++.++++++.+.+..
T Consensus 135 ~~~~----~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 135 SWYI----QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred cEEE----EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 1222 256899999999999999876544
No 54
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.68 E-value=1e-15 Score=124.30 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC---cccccC--CCCCcceeeEeEEEEee-------------CCceEEEEeCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK---AFKASA--GSSGVTKTCEMKTTVLK-------------DGQVVNVIDTPGLFD 81 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~---~~~~~~--~~~~~t~~~~~~~~~~~-------------~~~~~~lvDtpG~~~ 81 (352)
.+|+++|+.|+|||||++.|++.. .+.... ...+.|.......+.+. .+..+++|||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 379999999999999999998731 110000 01123333333333331 256889999999632
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
+..........+|++++|+|+....+..+...+.... ..+. |+++++||+|.... ...+..+
T Consensus 81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~~~----~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-ILCK----KLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-HcCC----CEEEEEECcccCCH--HHHHHHH
Confidence 2222222335689999999998555555544444332 2343 89999999998754 3333333
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.. ....+...+...+.. .-...+.|+.++.++.+|++.+...+.
T Consensus 143 ~~-~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HH-HHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 32 000122222111110 012346789999999999999887664
No 55
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.68 E-value=7.3e-16 Score=126.52 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccccc-----------------------------CCCCCcceeeEeEEEEeeCCceE
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKDGQVV 71 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (352)
+|+|+|+.|+|||||++.|++....... ....+.|.......+.+ ++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999754321110 00022344444444455 68889
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 72 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
.++||||+.+ +...+..+...+|++++|+|++..+.......+.++.. ++.. ++++|+||+|...
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~---~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIR---HVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCC---cEEEEEEchhccc
Confidence 9999999532 22222233468899999999986666555554444433 3421 5788899999875
Q ss_pred cchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHH
Q 018636 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (352)
Q Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L 200 (352)
.....+...... ++.++...+... ....+.||.++.++.+.
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~~~---~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGIED---ITFIPISALDGDNVVSR 185 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCCCC---ceEEEEeCCCCCCCccC
Confidence 322333334443 555555544221 11235677777777643
No 56
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.68 E-value=2e-15 Score=119.22 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||+|.+++.... .....|.... .....+ ++ ..+.+|||||.... .. .
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~---l 65 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV----DEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY--------SA---M 65 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc----CCcCCcchheEEEEEEE-CCEEEEEEEEECCCCcch--------HH---H
Confidence 58999999999999999999976531 1111122111 122223 33 34678999995431 11 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.+++++++|++++++-+-.+. .++..+..... ....|+++|.||+|+... ....+. ...+...
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~--~~~~~~--------~~~~~~~ 134 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR--TVSSRQ--------GQDLAKS 134 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--eecHHH--------HHHHHHH
Confidence 22234578999999998833222222 23333433321 112389999999998754 211111 1222222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.+..++ ++|++++.++.++++.+.+.
T Consensus 135 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 135 YGIPYI------ETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred hCCeEE------EecCCCCCCHHHHHHHHHHH
Confidence 233332 46888899999999887654
No 57
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.68 E-value=2.4e-15 Score=136.77 Aligned_cols=158 Identities=23% Similarity=0.271 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+.+|+|+|.+|+|||||+|.|+|.......... +.|.......+.+ ++..+.++||||+.+.. ..+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~-gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIA-GTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-CcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence 3479999999999999999999987642222222 2233333334444 77889999999987532 11111111112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+|++++.+..+...+.. ..+ .|+++|+||+|+... .... ....
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~---~~~----~piiiV~NK~DL~~~--~~~~---------------~~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE---LKD----KPVIVVLNKADLTGE--IDLE---------------EENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh---cCC----CCcEEEEEhhhcccc--chhh---------------hccC
Confidence 234568899999999986666554443332 112 289999999998754 1111 0001
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. ....|++++.++.+|++.+.+.+..
T Consensus 345 ~~------~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KP------VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred Cc------eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 11 2356888999999999999988754
No 58
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.68 E-value=7.6e-16 Score=123.47 Aligned_cols=162 Identities=20% Similarity=0.157 Sum_probs=91.9
Q ss_pred EEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccC
Q 018636 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (352)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (352)
|+|++|+|||||+|+|+|... ..... ...|.......+.+ . +..+.++||||+.........+...+. ..+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~-~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANY-PFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCC-CceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence 589999999999999998864 11111 12233333344445 5 888999999998653222111122222 2234
Q ss_pred CccEEEEEEecCCCC-----C-HHHH-HHHHHHHHhhcc-----cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHH
Q 018636 103 GIHAFLVVFSVTNRF-----S-QEEE-TAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (352)
Q Consensus 103 ~~~~~l~v~~~~~~~-----~-~~~~-~~l~~~~~~~~~-----~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (352)
++|++++|+|++... . ..+. .+...+...... ....|+++|+||+|+... ..+..... .
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~-------~ 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELV-------R 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHH-------H
Confidence 789999999998432 2 2222 222222221110 012399999999999765 33332210 0
Q ss_pred HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.........+ ..+|+.++.++.++++.+..+
T Consensus 145 ~~~~~~~~~~------~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAEV------VPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCCE------EEEehhhhcCHHHHHHHHHhh
Confidence 1111112222 356888899999999877543
No 59
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.68 E-value=8.7e-16 Score=121.86 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=90.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+++|..|+|||||++.|.+...... ..|.......+.. .+..+.+|||||... +.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc-----cCCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999976543111 1122222223333 567789999999532 222233
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHHHh
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..+.++|++++|+|+++..+-.+ ...++...+... ...|++||.||+|+... ..+.+.+++.. -..
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~---------~~~ 140 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL---------TRI 140 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC---------Ccc
Confidence 45578999999999984322211 122222222110 11389999999998643 11222222211 000
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
....+. ..++||+++.++.+++++|.
T Consensus 141 ~~~~~~----~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 141 RDRNWY----VQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCCcEE----EEEeeCCCCCChHHHHHHHh
Confidence 011121 12578999999999998874
No 60
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.68 E-value=1.7e-15 Score=119.53 Aligned_cols=153 Identities=18% Similarity=0.106 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE--EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|.+|+|||||++.+++... . .....+.....+ .... ++ ..+.+|||||... +..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~ 64 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-E---PQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQER-----------FQT 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C---CCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence 4799999999999999999986653 1 111112222222 2222 33 3567999999432 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|++++.+..+ ..++..+..... . .|+++|+||+|+... . ..+ ...+..
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~p~ivv~nK~Dl~~~--~-~~~---------~~~~~~ 129 (161)
T cd04124 65 MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-E--IPCIVVANKIDLDPS--V-TQK---------KFNFAE 129 (161)
T ss_pred hhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEECccCchh--H-HHH---------HHHHHH
Confidence 33345578999999999984444333 345555554322 2 399999999997432 1 111 111222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|++++.++.++++.+.+.+.
T Consensus 130 ~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 130 KHNLPLY------YVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2222222 4688889999999998876553
No 61
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.68 E-value=8.2e-15 Score=133.62 Aligned_cols=164 Identities=20% Similarity=0.255 Sum_probs=110.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~--~~~~~~~~~~ 96 (352)
..+|+++|.+|+|||||+|.|+|...... ..+ ++|+......+.. .+..+.++|.||.++..... +.+.+++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~Vg-Nwp-GvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~l-- 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVG-NWP-GVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFL-- 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceec-CCC-CeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHH--
Confidence 36799999999999999999999886333 233 3566666666666 78889999999999865433 33333322
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
. ...+|+++-|+|++ .+...-.-.+.++. +|. |+++++|++|.....+-.++ ...+-+..
T Consensus 78 -l--~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g~----p~ilaLNm~D~A~~~Gi~ID----------~~~L~~~L 137 (653)
T COG0370 78 -L--EGKPDLIVNVVDAT-NLERNLYLTLQLLE--LGI----PMILALNMIDEAKKRGIRID----------IEKLSKLL 137 (653)
T ss_pred -h--cCCCCEEEEEcccc-hHHHHHHHHHHHHH--cCC----CeEEEeccHhhHHhcCCccc----------HHHHHHHh
Confidence 2 35789999999998 44333322333222 344 89999999998755111111 22333333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
+-..+ +++|..+.|+++|++.+.+..+....
T Consensus 138 GvPVv------~tvA~~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 138 GVPVV------PTVAKRGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred CCCEE------EEEeecCCCHHHHHHHHHHhcccccc
Confidence 44443 56788899999999999888765443
No 62
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.67 E-value=1.8e-15 Score=120.89 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=91.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+++|..|+|||||++.+....... ...|....+..+.. .+..+.++||||... +.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 4899999999999999999996333211 11233222333333 567789999999543 222223
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+.++|++++|+|++++-+-.+ ...++..++... ...|++||.||.|+... ...+++... +. + ...
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~-~~~ 144 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDE--AREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEK-----LG-L-HSI 144 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHH-----hC-c-ccc
Confidence 34578999999999983322111 112222222111 12389999999998644 222222111 10 0 011
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+.+. ..++||+++.++.+++++|.+.+
T Consensus 145 ~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 145 RDRNWY---IQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCcEE---EEEeeCCCCCCHHHHHHHHHHHh
Confidence 122221 12468899999999999887653
No 63
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.67 E-value=4.7e-15 Score=117.98 Aligned_cols=163 Identities=20% Similarity=0.257 Sum_probs=95.7
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH---HHHHHHHHHHh
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE---FVGKEIVKCLG 98 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~---~~~~~~~~~~~ 98 (352)
|+|+|.+|+|||||+|.|++...........+.|... ..+. ....++++||||+........ .....+..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~- 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI--NFFN--VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL- 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeE--EEEE--ccCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence 8999999999999999999543311111111122222 2222 233888999999887543221 1112122222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH-hcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-LCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~ 177 (352)
.....++.++++++.+...+..+...+.++... +. |+++++||+|.... ......... ....+. ...
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~~----~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-GI----PFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-CC----CEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 233467888999988755556656666665543 32 89999999999755 333333222 333332 112
Q ss_pred -CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 178 -~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..++ +.|+.++.++.++++.+.+.
T Consensus 145 ~~~~~------~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPII------LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceE------EEecCCCCCHHHHHHHHHHh
Confidence 2222 56777888999999988764
No 64
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.67 E-value=4e-15 Score=120.90 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.|+++|..|+|||||++.+..... .. ....+++.......+.+ ++ ..+.+|||+|.. .+.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~-~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe-----------~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CE-ACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQE-----------RFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CC-cCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCch-----------hhHHHHH
Confidence 689999999999999999986543 11 11111222222233444 44 456899999943 2333334
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc-
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 176 (352)
.++.++|++++|+|++++-+-... .++..+........ |++||.||+|+... ..+.... ...+....
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~--piilVgNK~DL~~~--~~v~~~~-------~~~~a~~~~ 136 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA--ELLLVGNKLDCETD--REISRQQ-------GEKFAQQIT 136 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEECcccccc--cccCHHH-------HHHHHHhcC
Confidence 456799999999999854443332 34444444333333 89999999998643 2111100 11122221
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..++ .+||+++.++.+++..+.+.+
T Consensus 137 ~~~~~------etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 137 GMRFC------EASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHH
Confidence 22222 568889999999998775543
No 65
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=5.9e-15 Score=119.96 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|.+|+|||||++.+++... .. ....|+ ......+.+ ++ ..+.+|||||........ ..+...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~---~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~---~~e~~~ 72 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PE---EYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTA---GQEWMD 72 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-Cc---ccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccc---hhHHHH
Confidence 3799999999999999999997654 11 112222 111122333 44 356799999976432111 122222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhc-ccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+..+|++++|+|++++.+-.. ..++..+..... .....|+++|.||+|+... ...... ..+.+.
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~-------~~~~~~ 143 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRH-------VLSVLV 143 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHH-------HHHHHH
Confidence 22334578999999999984433322 223334443321 0112399999999999643 111100 022222
Q ss_pred H-hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 018636 174 Q-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (352)
Q Consensus 174 ~-~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~ 214 (352)
. ..+..++ ++||+++.++.+|++.+.+.+-.++..
T Consensus 144 ~~~~~~~~~------e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 144 RKSWKCGYL------ECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred HHhcCCcEE------EecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 2 1122222 578889999999999888776554443
No 66
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=126.13 Aligned_cols=129 Identities=24% Similarity=0.268 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|.|.+|+|||||++.|++... ...+++.|+. ..+.++.. .+..+.+|||||+.|-.... ...+...
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp---EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~E---rN~IE~q 239 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP---EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEE---RNEIERQ 239 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC---ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHH---hcHHHHH
Confidence 447999999999999999999998764 2445565554 45555555 77799999999998854322 2223222
Q ss_pred Hhccc-CCccEEEEEEecC--CCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH
Q 018636 97 LGMAK-DGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 97 ~~~~~-~~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
.-.+. .-.++++|++|++ +.++-++ ..+++.++..|.. |+++|+||+|..+. +.+++
T Consensus 240 Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~----p~v~V~nK~D~~~~--e~~~~ 300 (346)
T COG1084 240 AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA----PIVVVINKIDIADE--EKLEE 300 (346)
T ss_pred HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC----CeEEEEecccccch--hHHHH
Confidence 22222 2347899999998 6677554 4677888888884 89999999999866 55544
No 67
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.67 E-value=1.2e-15 Score=120.06 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=87.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|..|+|||||++.+........ ..|.......+.. ....+.+|||||... +.......
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 799999999999999999964433111 1122222222333 567789999999532 22223345
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
+.++|++++|+|++++-+-.+ ...++..++... ...|++|+.||.|+... ...++.... +. + .....
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~-~~~~~ 133 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDK-----LG-L-HSLRN 133 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC-c-cccCC
Confidence 678999999999983322111 112222222111 11389999999998644 222222111 10 0 00011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
+... ..+.||+++.|++++++++.
T Consensus 134 ~~~~---~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 134 RNWY---IQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCEE---EEEeeCCCCCCHHHHHHHHh
Confidence 1111 23568899999999998764
No 68
>PRK09866 hypothetical protein; Provisional
Probab=99.67 E-value=2.4e-13 Score=123.75 Aligned_cols=121 Identities=12% Similarity=0.057 Sum_probs=78.3
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..++++||||+..... ..+.+.+.. ....+|+++||+|+...++..+...++.+... ++. .|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence 4678999999986432 123333333 34688999999999866788888888777664 321 28999999999
Q ss_pred CCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+......+..... +...+..... .|..+.++||..+.++..|++.|..
T Consensus 301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 875311122222221 2222222111 2445567899999999999998765
No 69
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.67 E-value=5.9e-15 Score=118.78 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=100.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|..|+|||||++.+.+... .. ....+.+.......+.. ++ ..+.+|||+|... +...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~-~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ES-PYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 37999999999999999999986543 11 11111222222222333 34 4567899999432 2333
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|++++.+-... .++..+..... .+ |++||.||.|+........+ . ...+...
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~--piilVGNK~DL~~~~~v~~~-~--------~~~~a~~ 139 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GV--PKILVGNRLHLAFKRQVATE-Q--------AQAYAER 139 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccchhccCCCHH-H--------HHHHHHH
Confidence 33455799999999999855443333 45555654432 33 99999999998643001111 1 2233334
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
.+..++ .+||.++.+++++++.+.+.+...
T Consensus 140 ~~~~~~------e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 140 NGMTFF------EVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred cCCEEE------EecCCCCCCHHHHHHHHHHHHHHh
Confidence 344443 568889999999999998766543
No 70
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.67 E-value=1e-15 Score=120.48 Aligned_cols=155 Identities=15% Similarity=0.049 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|..|+|||||++.|........ ..|.......+.+ .+..+.+|||||... +......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 589999999999999999976554211 1122222333334 567889999999643 12222334
Q ss_pred cCCccEEEEEEecCCCCCHH--HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
+.+++++++|+|++++-+.. ...+...+..... ...|+++|+||+|+... ....+.... +. . .....
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~--~~~~~i~~~-----~~-~-~~~~~ 132 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA--LSEAEISEK-----LG-L-SELKD 132 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC--CCHHHHHHH-----hC-c-cccCC
Confidence 46899999999988322111 1222222221110 12399999999998754 222221111 10 0 00011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
... ...++|+.++.++.++++.+.+
T Consensus 133 ~~~---~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 133 RTW---SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CcE---EEEEeeccCCCCHHHHHHHHhc
Confidence 111 1246788999999999988743
No 71
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=5.3e-15 Score=117.48 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++... .... ..+.........+.+ ++ ..+.++||||... +....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~-~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSF-NPSF-ISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcC-Cccc-ccCccceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHHH
Confidence 7999999999999999999997754 1111 111112222223333 33 3578999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-.. ..++..+....... .|+++|.||+|+........++ ...+....
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEKRVVSKEE---------GEALADEY 138 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence 334468899999999874333222 22333344332222 3899999999987531112221 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..+ ..+|+.++.++.+++..+.+.+
T Consensus 139 ~~~~------~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 139 GIKF------LETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CCEE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 3333 2567888899999999887765
No 72
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.67 E-value=3.9e-15 Score=118.00 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|..|+|||||++.+++.... .....|.. .....+.. ++ ..+.+|||||... +..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~-----------~~~ 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT----SAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQER-----------YRT 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHH
Confidence 58999999999999999999987641 11112222 22222222 32 4578999999432 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|.+++-+-.. ..++..+....... .|+++|.||+|+........++ ...+..
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~~---------~~~~~~ 134 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSER---------GRQLAD 134 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 23344578999999999883322221 22344443332222 3899999999986541011111 122233
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..++ .+|++++.++.+|++.+...+
T Consensus 135 ~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 135 QLGFEFF------EASAKENINVKQVFERLVDII 162 (165)
T ss_pred HcCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 3232332 468888999999999887765
No 73
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.67 E-value=4.7e-15 Score=117.93 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=94.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe--EEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+++|..|+|||||++.+++... ......|....+ ..+...+ ...+.+|||||.. .+....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF----DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE-----------RFKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC----CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH-----------HHHhhH
Confidence 799999999999999999998754 222222332222 2233311 3467899999943 222233
Q ss_pred hcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhh-cccccceEEEEEeCCCCCCcch-hcHHHHhcccCChhHHHHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~-~~~~~~~~ilv~nk~D~~~~~~-~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+.++|++++|+|++++-+-. ...++..+.... ... .|+++|.||.|+..... ...++. ...+..
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~~~~~~~~~~~~--------~~~~~~ 136 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSS--VLLFLVGTKKDLSSPAQYALMEQD--------AIKLAA 136 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEChhcCccccccccHHH--------HHHHHH
Confidence 44567899999999997322221 223444443322 222 27899999999864311 111111 122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ ..||.++.++.++++.+..+..+
T Consensus 137 ~~~~~~~------e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 137 EMQAEYW------SVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 3333333 46888899999999998887654
No 74
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.67 E-value=9.7e-16 Score=120.54 Aligned_cols=155 Identities=16% Similarity=0.163 Sum_probs=87.8
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhccc
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
|+|+|++|||||||+|.|.+... ......|.......... ++..+.++||||... +.......+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~----~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF----SEDTIPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC----CcCccCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 79999999999999999998754 11222233332333333 456788999999532 122222334
Q ss_pred CCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
..+|++++|+|++. ...... ....+...+.. ....|+++|+||+|.... ....+.... +. +.......
T Consensus 66 ~~~d~ii~v~d~~~-~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~-----~~-~~~~~~~~ 135 (159)
T cd04159 66 RGVNAIVYVVDAAD-RTALEA-AKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQ-----MN-LKSITDRE 135 (159)
T ss_pred hcCCEEEEEEECCC-HHHHHH-HHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHH-----hC-cccccCCc
Confidence 67899999999872 211111 11122222110 012389999999998755 333322221 10 00000111
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+. ....|++++.++.++++.+.+
T Consensus 136 ~~----~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 136 VS----CYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred eE----EEEEEeccCCChHHHHHHHhh
Confidence 11 124688889999999988754
No 75
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.66 E-value=1.1e-14 Score=115.52 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|||||||++.+++..... ....+.+.......+.. ++ ..+.++||||.. .+....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~-----------~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL--DSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQE-----------RYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEEE-CCEEEEEEEEeCCChH-----------HHHHHH
Confidence 689999999999999999999776411 11122222222233333 33 357899999942 222222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..++++++|+|+++..+-.+. .++..+....... .|+++|.||+|+........++ ...+....
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTEE---------AKAFAEKN 138 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHHH---------HHHHHHHc
Confidence 3345688999999999843333222 3444444433222 3899999999986431011111 22222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
+..++ ++|+.++.++.++++.+...
T Consensus 139 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 139 GLSFI------ETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHH
Confidence 22232 56888899999999987654
No 76
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.66 E-value=8.1e-16 Score=123.96 Aligned_cols=166 Identities=9% Similarity=-0.029 Sum_probs=93.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+++|.+|||||||+|.+++...... ..|.......+.+ .+..+.++||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3458999999999999999999998653111 1122222333334 567889999999543 1222
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...++.++|++++|+|+++.-+-. ....+..+..... ....|+++|+||+|+... ..+.+.+.+.- .....
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~~~~~~i~~~l~l------~~~~~ 150 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAPYAASEDELRYALGL------TNTTG 150 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCCCCHHHHHHHcCC------Ccccc
Confidence 234457899999999987321111 1112222211100 012389999999998643 11233333321 00000
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.+...-.......++|+.++.++.++++++..
T Consensus 151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 00000000112346788899999999998854
No 77
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.66 E-value=3.6e-15 Score=117.30 Aligned_cols=156 Identities=19% Similarity=0.266 Sum_probs=93.9
Q ss_pred EEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCC
Q 018636 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (352)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (352)
|+|.+|+|||||+|.|+|.... .+.. .+.|.......+.+ ++..+.+|||||+.+...... ...+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-~~~~-~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-VGNW-PGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-ccCC-CCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 5899999999999999987632 2122 22344444444555 567889999999876443221 11222222212 58
Q ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEE
Q 018636 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (352)
Q Consensus 104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (352)
+|++++|+|+. .... ....+..+.. .+ .|+++|+||+|+... ..+..... .+....+..+
T Consensus 75 ~d~vi~v~d~~-~~~~-~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~--~~~~~~~~--------~~~~~~~~~~--- 134 (158)
T cd01879 75 PDLIVNVVDAT-NLER-NLYLTLQLLE-LG----LPVVVALNMIDEAEK--RGIKIDLD--------KLSELLGVPV--- 134 (158)
T ss_pred CcEEEEEeeCC-cchh-HHHHHHHHHH-cC----CCEEEEEehhhhccc--ccchhhHH--------HHHHhhCCCe---
Confidence 99999999988 3322 2223333332 23 389999999999755 32222111 1222223222
Q ss_pred cCCCcccccchHHHHHHHHHHHHHH
Q 018636 184 DNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 184 ~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+.|+.++.++.++++.+....
T Consensus 135 ---~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 135 ---VPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ---EEEEccCCCCHHHHHHHHHHHh
Confidence 3567788899999998887654
No 78
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=2.4e-15 Score=120.93 Aligned_cols=160 Identities=13% Similarity=0.092 Sum_probs=92.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|..|+|||||++.+........ ..|.......+.. .+..+.++||||... +....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-----~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 78 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT-----IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLW 78 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence 348999999999999999999964433111 1222222333333 567889999999532 22223
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|++++-+-.+ ....+...+... ...|++||.||.|+... ...++.... +. +..
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~~ 147 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LHS 147 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CCc
Confidence 344578999999999983221111 112222222211 12389999999998643 222221111 10 001
Q ss_pred cCCc-EEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~-~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+..+ +++ ..+||.++.++.++++++.+.+.
T Consensus 148 ~~~~~~~~----~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 148 VRQRNWYI----QGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred ccCCcEEE----EeeeCCCCCCHHHHHHHHHHHHH
Confidence 1111 221 24688899999999999876553
No 79
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.66 E-value=5.2e-15 Score=116.80 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=91.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+|+++|+.|+|||||+|.+++...... ...+.+.......+.+ ++ ..+.+|||||... +.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 799999999999999999998765211 1112222222333333 33 3578999999322 222233
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|.+++-+-.+ ..++..+....+.. .|+++++||+|.........++ ...+....+
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLSDKRQVSTEE---------GEKKAKELN 136 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhccccCccCHHH---------HHHHHHHhC
Confidence 34468899999999983322222 23444444333322 3999999999985331111111 112222223
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..++ ..|+.++.++.++++.+.+.
T Consensus 137 ~~~~------~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 137 AMFI------ETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CEEE------EEeCCCCCCHHHHHHHHHHh
Confidence 2222 46778889999999988653
No 80
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=2.9e-15 Score=120.24 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=93.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+++|..|+|||||++.+........ ..|.......+.. .+..+.+|||||.. .+....
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~-----------~~~~~~ 78 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQD-----------KIRPLW 78 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEEEE-CCEEEEEEECCCCH-----------HHHHHH
Confidence 447999999999999999999975433111 1222222333333 56788999999932 222233
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|++++-+-.+ ....+...+... ...|++|+.||.|+... ...+++.. .+..
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~---------~l~l 145 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITD---------KLGL 145 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHH---------HhCc
Confidence 344578999999999983322111 112223222211 12389999999998755 33322221 1111
Q ss_pred c--CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 C--DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~--~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
. ..+.+. ..++||+++.|+.++++++.+.+
T Consensus 146 ~~~~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 146 HSLRQRHWY---IQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred cccCCCceE---EEeccCCCCCCHHHHHHHHHHHH
Confidence 1 111111 12458889999999999987665
No 81
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.66 E-value=2.4e-15 Score=120.23 Aligned_cols=157 Identities=14% Similarity=0.074 Sum_probs=90.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+++|.+|+|||||++.|++...... ..|....+..+.+ ++..+.++||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999986554211 1233333333444 567889999999542 112222
Q ss_pred cccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+.++|++++|+|+++.-+-. ....+..+....+ ....|+++++||+|+... ...++.... +. +...-.
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~-----l~-~~~~~~ 148 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISES-----LG-LTSIRD 148 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC-cccccC
Confidence 3446899999999998332111 1122222211111 012389999999998653 222221111 11 000001
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
..+. ..++||.++.++.++++++.
T Consensus 149 ~~~~----~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 149 HTWH----IQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CceE----EEecccCCCCCHHHHHHHHh
Confidence 1121 23678899999999998874
No 82
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=7.7e-15 Score=116.65 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+|+|.+|+|||||++.+++...... ...+.+.......+.... ...+.+|||||.. .+.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMITIDGKQIKLQIWDTAGQE-----------SFRSITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEECCCcH-----------HHHHHHH
Confidence 7999999999999999999998754111 111112222222223311 2467899999932 2222233
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|++++-+-.. ..++..+....... .|+++|.||+|.........++ ...+....+
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~~ 140 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSYEE---------GEAFAKEHG 140 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHcC
Confidence 34468899999999883322222 22333333332222 2899999999987431111111 112222223
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+ .+.|+..+.++.+++..+.+.+
T Consensus 141 ~~~------~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 141 LIF------METSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred CEE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 222 2567788899999998877665
No 83
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.66 E-value=1.5e-13 Score=116.46 Aligned_cols=151 Identities=25% Similarity=0.355 Sum_probs=101.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc------CCCCCcceeeEeEEEEee-CC--ceEEEEeCCCCCCCCCCcHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSEF 88 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~------~~~~~~t~~~~~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~~ 88 (352)
-..+|.++|.+|.|||||+|.|++....... +.....+.........+. ++ ..++++|||||+|.-.. ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-cc
Confidence 3479999999999999999999987431110 111123333444433332 22 36789999999986533 22
Q ss_pred HHHHHHHHH------------------hcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCC
Q 018636 89 VGKEIVKCL------------------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (352)
Q Consensus 89 ~~~~~~~~~------------------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~ 149 (352)
.++-+..++ ......+|++||.+.++ +.++.-|...|+.+... + |+|-|+.|.|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~----v--NlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR----V--NLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc----c--Ceeeeeecccc
Confidence 233333322 12235689999999877 78888888777665442 2 89999999999
Q ss_pred CCcchhcHHHHhcccCChhHHHHHHhcCCcEEE
Q 018636 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (352)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 182 (352)
++. +.|..+-.. +...+..+.-++|.
T Consensus 175 lT~--~El~~~K~~-----I~~~i~~~nI~vf~ 200 (373)
T COG5019 175 LTD--DELAEFKER-----IREDLEQYNIPVFD 200 (373)
T ss_pred CCH--HHHHHHHHH-----HHHHHHHhCCceeC
Confidence 988 888888777 77778777766663
No 84
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.66 E-value=3.7e-15 Score=139.81 Aligned_cols=165 Identities=17% Similarity=0.212 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+++|+.++|||||+++|+|....... ....+.|....+..+...++..+.+|||||. +.+...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-----------e~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-----------EKFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-----------HHHHHHHHH
Confidence 6899999999999999999985421111 1123456655555554445778899999994 334344444
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
...++|++++|+++++.+...+...+..+.. ++.. ++++|+||+|+.+. ..++..... +..++...+..
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi~---~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGNP---MLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 5568999999999997787887877776654 3431 46799999999865 566655544 55555433311
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++|+.++.++.+|++.|..+...
T Consensus 140 ---~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 140 ---EAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred ---CCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 1123467888999999999999887644
No 85
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.66 E-value=4.2e-16 Score=122.07 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+++|++|+|||||+|.|.|... ... .+.. +.+ ... .+|||||++... ...... +..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~----~~~--~~~~-----v~~-~~~--~~iDtpG~~~~~---~~~~~~----~~~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT----LAR--KTQA-----VEF-NDK--GDIDTPGEYFSH---PRWYHA----LIT 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc----cCc--cceE-----EEE-CCC--CcccCCccccCC---HHHHHH----HHH
Confidence 3799999999999999999998753 111 1111 112 111 279999986532 111222 223
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
.+.++|++++|+|++...+.... ++... +. ..|+++++||+|+... ..+. +..++...+..
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~ 121 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDA---DVAA---------TRKLLLETGFE 121 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcc---cHHH---------HHHHHHHcCCC
Confidence 35689999999999844332221 12221 11 1289999999998543 1221 22233232221
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++|+.++.++.+|++.+.+.+.
T Consensus 122 ----~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 122 ----EPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ----CCEEEEECCCccCHHHHHHHHHHhch
Confidence 12235788899999999999988764
No 86
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.66 E-value=7.1e-15 Score=116.83 Aligned_cols=159 Identities=17% Similarity=0.116 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|+|||||+|.+++.... .....|.. .....+... ....+.+|||||... +...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV----SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEV 65 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHH
Confidence 47999999999999999999987652 12222222 222223331 134668999999532 1222
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcc---cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~---~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
....+.+++++++|+|++++-+-. ...++..+...... ....|+++|.||+|+........++ ...+
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~ 136 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLW 136 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHH
Confidence 233457899999999998433222 23345555544332 1224899999999986320011111 1122
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+..++ .+|+.++.++.++++.+.+.+
T Consensus 137 ~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 137 AESKGFKYF------ETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HHHcCCeEE------EEECCCCCCHHHHHHHHHHHH
Confidence 233233333 567788999999999876643
No 87
>PRK11058 GTPase HflX; Provisional
Probab=99.66 E-value=4.6e-15 Score=133.30 Aligned_cols=164 Identities=16% Similarity=0.058 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|.+|||||||+|.|+|...+.. .....|.+.....+.+.+...+.++||||+.... + ..+.+.+... ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p-~~lve~f~~t-l~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-P-HDLVAAFKAT-LQ 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-C-HHHHHHHHHH-HH
Confidence 5899999999999999999999775321 1112344444444555344578899999985421 1 2223334433 23
Q ss_pred ccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.+..+|++++|+|++++.+..... +..++..+... ..|+++|+||+|+... .. ..+.. . ..+.
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~--~~pvIiV~NKiDL~~~--~~--~~~~~---------~-~~~~ 336 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH--EIPTLLVMNKIDMLDD--FE--PRIDR---------D-EENK 336 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC--CCCEEEEEEcccCCCc--hh--HHHHH---------H-hcCC
Confidence 456899999999998554444433 23334433221 2389999999998643 11 01110 0 0111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+ ...+|++++.++.+|++.+...+.
T Consensus 337 ~~-----~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 337 PI-----RVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred Cc-----eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 11 124689999999999999988874
No 88
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=5.5e-15 Score=116.67 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+|+|.+|+|||||++.|++..... ....+.+.......+.... ...+.+|||||... +.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE--DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence 379999999999999999998776411 1111112222222223311 24578999999432 222222
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|+++.-+-.. ..++..+........ |++++.||+|.........++ ...+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNI--VVILVGNKSDLADQREVTFLE---------ASRFAQENG 136 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcchhccCCHHH---------HHHHHHHcC
Confidence 33468899999999984333322 234444444433333 899999999986431011111 222333333
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..++ ..|+.++.++.++++.+.+
T Consensus 137 ~~~~------~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 137 LLFL------ETSALTGENVEEAFLKCAR 159 (161)
T ss_pred CEEE------EEECCCCCCHHHHHHHHHH
Confidence 3333 4577788999999988754
No 89
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.66 E-value=1.6e-15 Score=119.81 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|.+|+|||||++.|++...+... ...|.......+.. .+..+.++||||... +......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI---IVPTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce---ecCccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 5899999999999999999986432111 11122222222233 567889999999543 22222334
Q ss_pred cCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhc-ccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
+.++|++++|+|++++.+-.. ...+..+..... .....|+++|+||+|+... ....+.... +. +......
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~-----l~-~~~~~~~ 137 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQL-----LG-LENIKDK 137 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHH-----hC-CccccCc
Confidence 568999999999984332211 223333322110 0112399999999998754 222211111 00 0000011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.+. ...+||+++.+++++++++.
T Consensus 138 ~~~----~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 138 PWH----IFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eEE----EEEeeCCCCCchHHHHHHHh
Confidence 111 23578899999999998874
No 90
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=6.5e-15 Score=116.81 Aligned_cols=156 Identities=16% Similarity=0.118 Sum_probs=91.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
+|+|+|..|+|||||+|.+.+... ... .+.+.........+ .....+.+|||||..... .. +..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~----~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PEN---VPRVLPEITIPADVTPERVPTTIVDTSSRPQDR-------AN----LAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-Ccc---CCCcccceEeeeeecCCeEEEEEEeCCCchhhh-------HH----Hhh
Confidence 799999999999999999987654 111 11111111111111 134567899999965421 11 122
Q ss_pred ccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhc---HHHHhcccCChhHHHHHH
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT---LEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~---l~~~l~~~~~~~~~~~~~ 174 (352)
.+..+|++++|+|++++-+-.. ..++..+..... . .|+++|.||+|+... .. +++.+. .+..
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~--~~~~~~~~~~~--------~~~~ 133 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDG--SSQAGLEEEML--------PIMN 133 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccc--cchhHHHHHHH--------HHHH
Confidence 2367899999999884433333 234555554332 2 399999999999754 22 222221 1212
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..... .....+||.++.+++++++.+.+.+
T Consensus 134 ~~~~~----~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 134 EFREI----ETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHhcc----cEEEEeccccccCHHHHHHHHHHHh
Confidence 11110 0123568888999999999887654
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.66 E-value=8.3e-15 Score=115.89 Aligned_cols=157 Identities=20% Similarity=0.168 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|++|+|||||+|.+++..... ....+.... ...+.+. .+..+.+|||||.. .+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~-----------~~~~~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE----NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE-----------RYRSL 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----CCCCccceeEEEEEEEECCEEEEEEEEeCCchH-----------HHHHH
Confidence 689999999999999999999876522 111222211 1222231 13457899999932 22222
Q ss_pred HhcccCCccEEEEEEecCCCCCH-HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|+++.-+- ....++..+.......+ |++++.||+|.........++ ...+...
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~~~~~~---------~~~~~~~ 135 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNI--IIALVGNKADLESKRQVSTEE---------AQEYADE 135 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECccccccCcCCHHH---------HHHHHHH
Confidence 23344678999999998732221 12334455554432223 899999999987431011221 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..+ .+.|+.++.++.++++.+.+.+
T Consensus 136 ~~~~~------~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 136 NGLLF------FETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cCCEE------EEEECCCCCCHHHHHHHHHHHh
Confidence 33222 3567888899999999877654
No 92
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=9.8e-15 Score=115.82 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|..|+|||||++.+.+... ......|..... ..+.. ++ ..+.+|||||.. .+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~-----------~~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF----MADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQE-----------RFRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC----CCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHH
Confidence 6899999999999999999987653 122222322222 22233 33 356899999932 2223
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~ 173 (352)
.....+.++|++++|+|++++-+-.. ..++..+....... .|+++|.||+|+... ..+ .+. ...+.
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~--~~~~~~~--------~~~~~ 134 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ--RDVTYEE--------AKQFA 134 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCcCHHH--------HHHHH
Confidence 33344578999999999984333222 23333333332222 389999999998654 211 111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+..++ .+||.++.++.+++..+...+
T Consensus 135 ~~~~~~~~------e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 135 DENGLLFL------ECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HHcCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 33333332 568888999999988776544
No 93
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.66 E-value=1.4e-15 Score=119.94 Aligned_cols=156 Identities=17% Similarity=0.121 Sum_probs=88.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|.+|+|||||++.+.+....... .|.......+....+..+.++||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI-----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc-----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 5899999999999999999987652221 1222222333332356789999999542 11222233
Q ss_pred cCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC-
Q 018636 101 KDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD- 177 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 177 (352)
+.++|++++|+|.++..+-.. ..+...+...... ..|+++|+||+|+... ...++.... +. +...+.
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~--~~~~~i~~~-----~~-~~~~~~~ 134 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIK--GVPVVLLANKQDLPGA--LTAEEITRR-----FK-LKKYCSD 134 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhc--CCCEEEEEECcccccC--cCHHHHHHH-----cC-CcccCCC
Confidence 467899999999884322111 1122222211101 2399999999998643 222222111 00 000011
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+ ...++||.++.|+.++++.|..
T Consensus 135 ~~~----~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 135 RDW----YVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CcE----EEEecccccCCChHHHHHHHhc
Confidence 011 1235789999999999998743
No 94
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.66 E-value=4.4e-14 Score=135.39 Aligned_cols=164 Identities=15% Similarity=0.154 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~--~~~~~~~~~~ 96 (352)
..+|+++|.+|||||||+|.|+|.... .+... ++|+......+.+ ++..+.++||||.++..... ....+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~p-GvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VGNWA-GVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-cCCCC-CceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 368999999999999999999998652 22332 3455444444444 67789999999998754211 1122222222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
. .....+|++++|+|++ .+... ......+.+ .+. |+++++||+|.... ..+... ...+-+..
T Consensus 80 ~-l~~~~aD~vI~VvDat-~ler~-l~l~~ql~e-~gi----PvIvVlNK~Dl~~~--~~i~id--------~~~L~~~L 141 (772)
T PRK09554 80 Y-ILSGDADLLINVVDAS-NLERN-LYLTLQLLE-LGI----PCIVALNMLDIAEK--QNIRID--------IDALSARL 141 (772)
T ss_pred H-HhccCCCEEEEEecCC-cchhh-HHHHHHHHH-cCC----CEEEEEEchhhhhc--cCcHHH--------HHHHHHHh
Confidence 1 1235789999999998 44322 223333333 233 99999999998744 222221 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+..+ .+.|+.++.++++|.+.+.....
T Consensus 142 G~pV------vpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 142 GCPV------IPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCE------EEEEeecCCCHHHHHHHHHHhhh
Confidence 4333 35678888999999999988764
No 95
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.66 E-value=6.4e-15 Score=119.29 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
++|+|+|..|+|||||++.+.+... +.....|....+. .+...++ ..+.+|||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~----~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF----PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC----CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 4799999999999999999997764 2222223322222 2222212 3568999999432 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+.++|++++|+|++++-+-.+. .++..+... ... .|+++|.||+|+... ......+.. .....+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~~--~~~~~~v~~---~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRKD--KNLDRKVTP---AQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhhC--ccccCCcCH---HHHHHHHH
Confidence 23345789999999999844333332 233333332 222 399999999998643 111111100 01222333
Q ss_pred hcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+. .+ ..+|+.++.++.+++..+...+.
T Consensus 138 ~~~~~~~------~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 138 KQGAFAY------LECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred HcCCcEE------EEccCCCCCCHHHHHHHHHHHHH
Confidence 3333 22 25688889999999998877654
No 96
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=3.9e-15 Score=143.25 Aligned_cols=163 Identities=21% Similarity=0.192 Sum_probs=110.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|+|||||+|.|+|......... .++|.........+ ++..+.+|||||+.... ..+...+.....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~-pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~ 349 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDT-PGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQ 349 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHH
Confidence 36899999999999999999998754222222 23454444444455 67889999999987422 123445555555
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.++..+|++++|+|++..++..+..+...+... + .|+++|+||+|.... ... ....... +
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-~----~pvIlV~NK~D~~~~--~~~-----------~~~~~~l-g- 409 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-G----KPVVLAVNKIDDQAS--EYD-----------AAEFWKL-G- 409 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECcccccc--hhh-----------HHHHHHc-C-
Confidence 566789999999999877888777777766542 3 299999999998643 111 1111111 1
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....++||.++.|+.+|++.+...+..
T Consensus 410 ----~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 410 ----LGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ----CCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 1112356899999999999998877643
No 97
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.66 E-value=4.7e-15 Score=120.10 Aligned_cols=165 Identities=17% Similarity=0.110 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|+|||||++.+++... +.....|....+ ..+.. ++ ..+.+|||+|.... ...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~-----------~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF----PQVYEPTVFENYVHDIFV-DGLHIELSLWDTAGQEEF-----------DRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC----CCccCCcceeeeEEEEEE-CCEEEEEEEEECCCChhc-----------ccc
Confidence 3799999999999999999987654 111122221111 12222 33 46789999995431 112
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc----CC-hhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CP-KPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~----~~-~~~ 169 (352)
...++.++|++++|++++++-+-.. ..++..+..... . .|+++|.||+|+... ....+.+... .. ...
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~--~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 139 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-G--VKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEG 139 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHH
Confidence 2234578999999999984433322 235555554332 2 389999999998754 2222211100 00 001
Q ss_pred HHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+....+.-.+ ..+||+++.++.+++..+.+.+..
T Consensus 140 ~~~~~~~~~~~~-----~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 140 LAVAKRINALRY-----LECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHHcCCCEE-----EEccCCcCCCHHHHHHHHHHHHhc
Confidence 122222222112 257888999999999998877643
No 98
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=132.33 Aligned_cols=143 Identities=20% Similarity=0.127 Sum_probs=83.3
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEeeC--CceEEEEeC-
Q 018636 2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD--GQVVNVIDT- 76 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~lvDt- 76 (352)
|++.+.++..+... .+.||+|||+||+|||||+++|+|... +..|.++.... +.+..... ...-++.|.
T Consensus 14 g~~~l~~~~~l~~~--~G~riGLvG~NGaGKSTLLkilaG~~~----~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v 87 (530)
T COG0488 14 GDRPLLENVSLTLN--PGERIGLVGRNGAGKSTLLKILAGELE----PDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYV 87 (530)
T ss_pred CCceeecCCcceeC--CCCEEEEECCCCCCHHHHHHHHcCCCc----CCCCeEeecCCceEEEeCCCCCcCCCccHHHHH
Confidence 44555555555554 448999999999999999999999987 77776665432 22221100 000011111
Q ss_pred -CCCCCCCCCcHHHHHHHHHHH------------------------------hcccC--CccEEEEEEecCCCCCHHHHH
Q 018636 77 -PGLFDLSAGSEFVGKEIVKCL------------------------------GMAKD--GIHAFLVVFSVTNRFSQEEET 123 (352)
Q Consensus 77 -pG~~~~~~~~~~~~~~~~~~~------------------------------~~~~~--~~~~~l~v~~~~~~~~~~~~~ 123 (352)
.|+.. -..+..++.... ..... +.... --++ ..+|++++.
T Consensus 88 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~-~~LSGG~r~ 160 (530)
T COG0488 88 IEGFGE----LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPV-SSLSGGWRR 160 (530)
T ss_pred HhhhHH----HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCch-hhcCHHHHH
Confidence 01000 000000000000 00000 11111 1222 489999999
Q ss_pred HHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 124 AVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
++.+++.++++ |.+++ +||+|...- .||++|+..
T Consensus 161 Rv~LA~aL~~~----pDlLLLDEPTNHLD~~~i--~WLe~~L~~ 198 (530)
T COG0488 161 RVALARALLEE----PDLLLLDEPTNHLDLESI--EWLEDYLKR 198 (530)
T ss_pred HHHHHHHHhcC----CCEEEEcCCCcccCHHHH--HHHHHHHHh
Confidence 99999999987 77777 599999977 999999886
No 99
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.65 E-value=9.5e-15 Score=116.39 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|+|||||++.+.+... +.....|....+ ..+.+ ++ ..+.++||||... +...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF----PDYHDPTIEDAYKQQARI-DNEPALLDILDTAGQAE-----------FTAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC----CCCcCCcccceEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHH
Confidence 6899999999999999999886654 111222222111 12333 34 3568899999543 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|++++++.+-.... ++..+..... ....|+++|.||+|+... ..+.... ...+...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~a~~ 136 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTEE-------GRNLARE 136 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHHH-------HHHHHHH
Confidence 333456889999999998555544433 3344444321 112399999999998643 2221100 1122223
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++ .+||.++.++.++++.+...+.
T Consensus 137 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 137 FNCPFF------ETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred hCCEEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 233333 5688889999999998876543
No 100
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.65 E-value=1.2e-14 Score=115.08 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|++|+|||||++.+++..... ....+.+.......+.+ ++ ..+.+|||||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE--QYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 489999999999999999999876411 11111222222233333 33 3678999999322 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|+++..+.... .++..+....... .|++++.||+|..... ....+. ...+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~~-~~~~~~--------~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQR-QVSREE--------AEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhccccc-CCCHHH--------HHHHHHHc
Confidence 3334678999999999843333222 2334443332222 3999999999986530 111111 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+..++ +.|+.++.++.++++.+.+.+.
T Consensus 136 ~~~~~------e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 136 GLPFF------ETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence 43333 4577778999999998877653
No 101
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.65 E-value=1.5e-14 Score=114.74 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++..... ....+.+.......+.. .+ ..+.+|||||... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence 689999999999999999999765411 11112222222233333 33 3578999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|+++.-+-.. ..++..+....... .|+++|.||+|+........++ ...+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYSE---------AQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence 334468899999999983222222 22334343332222 3899999999986441011111 12222232
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..++ ++|+.++.++.+++..+.+.+
T Consensus 138 ~~~~~------~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 138 GIPFL------ETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred CCeEE------EEECCCCcCHHHHHHHHHHHH
Confidence 33333 567888899999999887655
No 102
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.65 E-value=2e-15 Score=123.82 Aligned_cols=197 Identities=17% Similarity=0.161 Sum_probs=123.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~-~~~~~~~~~ 96 (352)
..++|||||.+|+|||||.|.+.|...+. .+....|+.+....+...+..++.++||||+........ .....+...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~--vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSA--VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcccc--ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 34799999999999999999999998843 556667787777777665788999999999987543221 111222223
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH--HHHhcccCChh-HHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL--EDFLGHECPKP-LKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l--~~~l~~~~~~~-~~~~~ 173 (352)
.+.+...+|++++++|++..-....-..|..+.....- |.++|+||+|........+ .+.+....-.. ..++-
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~i----ps~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKI----PSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcC----CceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 34455688999999999832222233455555554332 8999999999875411111 11111100000 00111
Q ss_pred HhcCCc-----------EEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHH
Q 018636 174 QLCDNR-----------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELK 221 (352)
Q Consensus 174 ~~~~~~-----------~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 221 (352)
+.+... +--|...+..||..++++++|.+++....+. +.+.|..++.
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~-gpW~y~a~i~ 282 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP-GPWKYPADIV 282 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC-CCCCCCcccc
Confidence 111110 1123445678999999999999998777654 5556766653
No 103
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.65 E-value=1.1e-14 Score=120.46 Aligned_cols=159 Identities=13% Similarity=0.035 Sum_probs=96.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE--EEee-CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|++||..|+|||||++.++.... ......|....+.. +... ....+.+|||+|....
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f----~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------- 75 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------- 75 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC----CCccCCccceeEEEEEEEECCeEEEEEEEECCCchhh-----------
Confidence 4558999999999999999998765443 11122232222222 2221 2347789999995432
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.......+.+++++++|+|++++.+-.. ..++..+..... . .|++||.||+|+... ....+. + .+
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~--~v~~~~--------~-~~ 141 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-N--IPIVLCGNKVDVKNR--QVKAKQ--------V-TF 141 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhhhhc--cCCHHH--------H-HH
Confidence 1222234578899999999985443322 234555554432 2 399999999998543 211111 1 12
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+..|+ .+||+++.++.+++.++...+..
T Consensus 142 ~~~~~~~~~------e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 142 HRKKNLQYY------EISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred HHhcCCEEE------EcCCCCCCCHHHHHHHHHHHHHc
Confidence 222233333 46888999999999998876643
No 104
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.65 E-value=5.1e-15 Score=117.20 Aligned_cols=158 Identities=22% Similarity=0.173 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+++|.+|+|||||++.+++... ......|.... .....+ ++ ..+.++||||..+. ..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~--- 65 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF--------SA--- 65 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceEEEEEEE-CCEEEEEEEEECCCCcch--------hH---
Confidence 37999999999999999999987653 11111222111 112223 33 35678999996542 11
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+++++.-+-... .++..+..... ....|+++++||+|+... ..+... . ...+..
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~--~~~~~~--~-----~~~~~~ 135 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQ--RKVSRE--E-----GQELAR 135 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccccc--ceecHH--H-----HHHHHH
Confidence 122233578999999999843222221 22333333221 112389999999998654 211110 0 122222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..+ ...|+.++.++.++++.+.+.+
T Consensus 136 ~~~~~~------~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 136 KLKIPY------IETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HcCCcE------EEeeCCCCCCHHHHHHHHHHhh
Confidence 223222 2568888999999999876543
No 105
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=1.2e-14 Score=117.99 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|+|||||++.+.+...... ....+.........+.+ ++ ..+.||||||-. .+....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~-----------~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG-NFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQE-----------RFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc-CcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcH-----------HHHHhh
Confidence 3799999999999999999987654111 11111111111111222 33 467899999932 222222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-.. ..++..+........ |+++|.||+|+........+ . ...+....
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~--piiiv~NK~Dl~~~~~~~~~-~--------~~~l~~~~ 136 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDV--VIMLLGNKADMSGERVVKRE-D--------GERLAKEY 136 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEEcccchhccccCHH-H--------HHHHHHHc
Confidence 334568899999999984332222 334555555433333 89999999998643101111 1 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
+..|+ +.|+.++.++.+|+..+.+.+...
T Consensus 137 ~~~~~------e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 137 GVPFM------ETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 33333 568888999999999998877653
No 106
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.65 E-value=1.1e-15 Score=118.01 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=83.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|++|+|||||+|.+++... ... .|.. ..+ .. .+|||||.... .......+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~----~~~--~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI----LYK--KTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc----ccc--ccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 799999999999999999998754 111 1211 112 11 58999996321 11112222234
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
+.++|++++|+|++++.+.....++. .++. |+++|+||+|+.... ...+ . ...+....+..
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~~----p~ilv~NK~Dl~~~~-~~~~-~--------~~~~~~~~~~~- 120 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFVK----PVIGLVTKIDLAEAD-VDIE-R--------AKELLETAGAE- 120 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hccC----CeEEEEEeeccCCcc-cCHH-H--------HHHHHHHcCCC-
Confidence 67999999999998555443322222 2232 899999999986431 1111 1 12233332321
Q ss_pred EEEcCCCcccccchHHHHHHHHHH
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLV 204 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i 204 (352)
....+|++++.++.+|++.+
T Consensus 121 ----~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 121 ----PIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred ----cEEEEecCCCCCHHHHHHHH
Confidence 12256888899999998875
No 107
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.65 E-value=1.2e-14 Score=116.06 Aligned_cols=160 Identities=19% Similarity=0.139 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||++.+.+... +.....|....+. .+.. ++ ..+.+|||+|.... ...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f----~~~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF----PSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCceeeeeEEEEEE-CCEEEEEEEEECCCccch-----------hhh
Confidence 5899999999999999999986543 1222223322221 2233 34 45679999996432 112
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC-----ChhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~-----~~~~ 169 (352)
....+.++|++++|+|++++-+-... .++..+....+ . .|++||.||.|+... ..+.+.+.... ....
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHH
Confidence 22355689999999999844333332 24444544322 2 399999999998654 22222222100 0111
Q ss_pred HHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+....+. .|+ .+||+++.++.++++.+..
T Consensus 141 ~~~a~~~~~~~~~------e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 141 EKLARDLKAVKYV------ECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHhCCcEEE------EecCCCCCCHHHHHHHHHH
Confidence 222222232 232 5688899999999987655
No 108
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.65 E-value=3.3e-15 Score=117.52 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=89.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|..|+|||||++.+++.... ....|.......+.+ .+..+.+|||||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-----TTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 5899999999999999999988631 122233333333344 5678899999995431 1122233
Q ss_pred cCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 101 KDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
+.++|++++|+|++.+-+-. ....+..+..... ....|++++.||+|.... ...++.... +.... ....
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~~--~~~~ 133 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLEK--ILGR 133 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChhh--ccCC
Confidence 45789999999998321111 1122222222111 112399999999998765 323222211 11000 1111
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.. .....|++++.++.++++.+.
T Consensus 134 ~~---~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 134 RW---HIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred cE---EEEEeeCCCCCCHHHHHHHHh
Confidence 11 122557888899999988764
No 109
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.65 E-value=1.6e-14 Score=119.35 Aligned_cols=160 Identities=19% Similarity=0.119 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|.+|+|||||++.+++... ......|.. .....+.+.+ ...+.||||||... ...
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~----~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~ 65 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF----GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGK 65 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC----CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHH
Confidence 3799999999999999999997654 222222332 2222333322 34678999999322 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+.++|++++|+|+++.-+-... .++..+...... ....|+++|.||+|+.... ....+. ...+.
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~-~v~~~~--------~~~~~ 136 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR-TVKDDK--------HARFA 136 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc-ccCHHH--------HHHHH
Confidence 223345789999999999843332222 345555554432 1122688999999986431 111111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ ..||+++.++.++++.+...+.
T Consensus 137 ~~~~~~~~------~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 137 QANGMESC------LVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred HHcCCEEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 33332222 4688899999999998877653
No 110
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.65 E-value=4.4e-15 Score=119.60 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|..|+|||||++.+.+.......++.+ .......+... .+..+.+|||||... +....
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~~ 69 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKG---FNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPLW 69 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCcCCccc---cceeEEEeeccCCCceEEEEEECCCcHh-----------HHHHH
Confidence 789999999999999999998765421111111 11111122211 345788999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|+++.-+-.+ ...+..+..... ....|+++|+||+|.... ....++.++.. -..
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~---------~~~ 139 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALSVSEVEKLLAL---------HEL 139 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCCHHHHHHHhCc---------ccc
Confidence 334568999999999873211111 122222322211 112399999999998643 11112222110 001
Q ss_pred cCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
... .+. ..++||.++.++.++++.+.+.+
T Consensus 140 ~~~~~~~----~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 140 SASTPWH----VQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred CCCCceE----EEEeecccCCCHHHHHHHHHHHH
Confidence 111 111 12578899999999999887665
No 111
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.65 E-value=1.2e-14 Score=117.00 Aligned_cols=157 Identities=16% Similarity=0.119 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEee-----------CCceEEEEeCCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK-----------DGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~-----------~~~~~~lvDtpG~~~~~~~ 85 (352)
..+|+++|..|||||||++.+.+... ......|.. .....+.+. ....+.+|||||.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------ 73 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF----NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ------ 73 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC----CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh------
Confidence 37999999999999999999987654 111111221 111112211 1246789999992
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhh-cccccceEEEEEeCCCCCCcchhcH-HHHhc
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTL-EDFLG 162 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~-~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~ 162 (352)
+.+.......+.++|++++|+|++++-+-.. ..++..+.... ... .|+++|.||+|+... ... .+.
T Consensus 74 -----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piiiv~nK~Dl~~~--~~v~~~~-- 142 (180)
T cd04127 74 -----ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCEN--PDIVLCGNKADLEDQ--RQVSEEQ-- 142 (180)
T ss_pred -----HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEeCccchhc--CccCHHH--
Confidence 3333344445578999999999984332222 23333343321 112 289999999998643 111 111
Q ss_pred ccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+....+..+ ..+|++++.++.++++.+.+.+
T Consensus 143 ------~~~~~~~~~~~~------~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 143 ------AKALADKYGIPY------FETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred ------HHHHHHHcCCeE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 222333333223 2568888999999999887654
No 112
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.65 E-value=6.7e-15 Score=116.42 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||++.+.+..... ....|.. .....+.. ++ ..+.+|||||.... ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE----KYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQF-----------TAM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCchhhhEEEEEEE-CCEEEEEEEEECCCcccc-----------chH
Confidence 689999999999999999998665311 1111221 11122233 33 34578999995432 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~ 174 (352)
....+.++|++++|+++++.-+-.. ..++..+..... ....|+++|.||+|+... ..+ .+. ...+..
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~--------~~~~~~ 134 (163)
T cd04136 66 RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDE--RVVSREE--------GQALAR 134 (163)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--ceecHHH--------HHHHHH
Confidence 2233468899999999984333222 233344443322 122389999999998643 211 111 112222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..+..++ ++||+++.++.++++.+.+.
T Consensus 135 ~~~~~~~------~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 135 QWGCPFY------ETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred HcCCeEE------EecCCCCCCHHHHHHHHHHh
Confidence 3232222 56888899999999987654
No 113
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.64 E-value=6.1e-15 Score=119.59 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=92.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+|+|.+|+|||||++.+++... .. ....|... ....... ++. .+.+|||||... +....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 64 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VE---TYDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEE-----------YTALR 64 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-Cc---cCCCchHhhEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence 589999999999999999986543 11 11112111 1112223 343 467899999432 11222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|+++.-+-.. ..++..+...... ....|+++|.||+|+... ..+... . ...+...
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~--~-----~~~~~~~ 135 (190)
T cd04144 65 DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTE--E-----GAALARR 135 (190)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHH--H-----HHHHHHH
Confidence 234568899999999984333222 2344444443221 122389999999998643 111100 0 1122233
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++ ..||.++.++.++++.+.+.+.
T Consensus 136 ~~~~~~------e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 136 LGCEFI------EASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred hCCEEE------EecCCCCCCHHHHHHHHHHHHH
Confidence 333332 5688889999999999887654
No 114
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.64 E-value=5.3e-15 Score=117.23 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++...... ...|..... ..+... ....+.++||||..... .+ .
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~---~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES----YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AM---Q 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC----cCCcchheEEEEEEECCEEEEEEEEECCCCCcch--------HH---H
Confidence 6899999999999999999987653111 111211111 111121 23456799999965421 11 1
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhccc-ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|++++-+... ..++..+....+.. ...|+++|.||+|+... ..+.... .......
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~ 137 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATE 137 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHH
Confidence 223457899999999984444332 34455555544321 22399999999998653 1111100 1111112
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.+..+ .++||+++.++.++++.|.++
T Consensus 138 ~~~~~------~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 138 WNCAF------METSAKTNHNVQELFQELLNL 163 (165)
T ss_pred hCCcE------EEeecCCCCCHHHHHHHHHhc
Confidence 22222 256888999999999987654
No 115
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.64 E-value=1.2e-14 Score=136.00 Aligned_cols=164 Identities=19% Similarity=0.207 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCc--ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.|+++|+.++|||||+|.|+|... ++. ....++|....+..+.+ ++..+.+|||||. +.+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~~-~~~~v~~iDtPGh-----------e~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFPL-PDYRLGFIDVPGH-----------EKFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEEe-CCEEEEEEECCCH-----------HHHHHHHH
Confidence 699999999999999999998542 111 12234566665555555 5688899999993 33444444
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+.++|++++|+|+++.+.......+..+.. ++-. ++++++||+|+.+. ..++..... +..++...+.
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi~---~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~~ 137 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGIP---HTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYIF 137 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhCC
Confidence 55678999999999986666666666665543 3431 49999999999865 554433333 4444443221
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. ......++|+.++.++.++.+.+..++..
T Consensus 138 ~--~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 138 L--KNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred C--CCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 0 00122367888999999999988887754
No 116
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.64 E-value=1.3e-14 Score=114.98 Aligned_cols=156 Identities=16% Similarity=0.102 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-C--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|||||||++.++.... ......|.........+. + ...+.+|||||...... +
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~--- 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--------L--- 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--------c---
Confidence 3799999999999999999985543 111222332222222211 2 34678999999643211 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|+++.-+-... .++..+....+ ..|+++|.||+|+... ....+ ...+...
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~~~~~---------~~~~~~~ 131 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--KVKAK---------QITFHRK 131 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--cCCHH---------HHHHHHH
Confidence 11234688999999999844333222 34455555443 2399999999998633 21111 1112222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ ++||+++.++.++++.+.+.+..
T Consensus 132 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 132 KNLQYY------EISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred cCCEEE------EEeCCCCCChHHHHHHHHHHHHh
Confidence 222333 56888899999999998876643
No 117
>PLN03110 Rab GTPase; Provisional
Probab=99.64 E-value=2.2e-14 Score=118.52 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=95.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
...+|+++|+.|+|||||++.+++.... .....|. ......+.+ ++ ..+.||||||.. .+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~----~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~-----------~~ 74 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC----LESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQE-----------RY 74 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcH-----------HH
Confidence 4479999999999999999999877541 1112222 222223333 33 367899999932 23
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKE 171 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~ 171 (352)
.......+.+++++++|+|.++.-+-.. ..++..+........ |+++|.||+|+... ..+ .+. ...
T Consensus 75 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--piiiv~nK~Dl~~~--~~~~~~~--------~~~ 142 (216)
T PLN03110 75 RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNI--VIMMAGNKSDLNHL--RSVAEED--------GQA 142 (216)
T ss_pred HHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC--eEEEEEEChhcccc--cCCCHHH--------HHH
Confidence 3333445578999999999984333222 235555555433333 89999999998543 111 111 112
Q ss_pred HHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+....+..++ .+||.++.++.++++.+...+
T Consensus 143 l~~~~~~~~~------e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 143 LAEKEGLSFL------ETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred HHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 2222222222 567888999999999876655
No 118
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.64 E-value=9.7e-15 Score=114.78 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE--Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||+|.|.+..... ....|........ ... ....+.++|+||... +...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE----NYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC----ccCCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHH
Confidence 379999999999999999999877522 1122222222222 221 235678999999532 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++-+... ..++..+....... .|+++++||+|..... ....+. ...+...
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~-~~~~~~--------~~~~~~~ 134 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLEDQR-QVSTEE--------AQQFAKE 134 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccccccc-cccHHH--------HHHHHHH
Confidence 3334467899999999983211111 22444444432112 3899999999996221 212222 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.+..++ ..|+.++.++.++++.+.
T Consensus 135 ~~~~~~------~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 135 NGLLFF------ETSAKTGENVEELFQSLA 158 (159)
T ss_pred cCCeEE------EEecCCCCCHHHHHHHHh
Confidence 333333 456667788999988764
No 119
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.64 E-value=1.3e-14 Score=114.58 Aligned_cols=154 Identities=21% Similarity=0.186 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
.+|+++|..|+|||||++.+++... ......|.... ...+.+. ....+.+|||||.. .+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~ 65 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF----TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----------EFD 65 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----------HHH
Confidence 3799999999999999999997654 11111222222 1222221 23467899999932 222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
......+.++|++++|++++++-+-.. ..++..+..... . .|+++|.||+|+........++ ...+.
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~~~v~~~~---------~~~~~ 133 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLDQAVITNEE---------AEALA 133 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhcccccCCCHHH---------HHHHH
Confidence 223334578999999999883322222 223333333222 2 3999999999986541111111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
...+..++ +.|+.++.++.++++.+..
T Consensus 134 ~~~~~~~~------~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 134 KRLQLPLF------RTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHcCCeEE------EEECCCCCCHHHHHHHHHH
Confidence 33333333 4677788999999987754
No 120
>COG2262 HflX GTPases [General function prediction only]
Probab=99.64 E-value=6.9e-15 Score=126.26 Aligned_cols=166 Identities=22% Similarity=0.153 Sum_probs=110.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.-..|+|+|-+|+|||||+|+|+|...+.. ..-..|.+.....+.+.++..+.+-||-||...- ...+...|...+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~--d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFksTL 266 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVA--DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKSTL 266 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecc--ccccccccCceeEEEeCCCceEEEecCccCcccC--ChHHHHHHHHHH
Confidence 447999999999999999999998877432 2223344444455566568999999999998742 233344454444
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
... ..+|+++.|+|++++.-.... .....+.++-..+ .|+++|+||+|.... ......+.. ..
T Consensus 267 EE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~~~~~~~-----------~~ 330 (411)
T COG2262 267 EEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEILAELER-----------GS 330 (411)
T ss_pred HHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhhhhhhhh-----------cC
Confidence 433 478999999999955322222 3334444432222 399999999998866 331111111 11
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+ ..+..||.++.+++.|.+.|.+.+..
T Consensus 331 ~-------~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 331 P-------NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred C-------CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 1 23456899999999999999998864
No 121
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.64 E-value=8.9e-15 Score=116.03 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=90.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|..|+|||||++.+.+... .. ...|.......+.. ++..+.++||||... +......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~---~~~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KK---VAPTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--cc---ccCcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 489999999999999999998732 11 11222222233344 677889999999422 22223345
Q ss_pred cCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
+.++|++++|+|+++.-+-.+ ...+..+..... ....|++||.||.|+... ....+..... .+..+....+..
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~~---~l~~~~~~~~~~ 137 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKNA--LLGADVIEYL---SLEKLVNENKSL 137 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcCC--CCHHHHHHhc---CcccccCCCCce
Confidence 578999999999983322221 222332222111 112399999999998765 3333332220 012222122223
Q ss_pred EEEEcCCCcccccch------HHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGT------EQVRQLLSLVN 205 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~------~~~~~L~~~i~ 205 (352)
+++ ..+||.++ .++.+-++++.
T Consensus 138 ~~~----~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 138 CHI----EPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred EEE----EEeEceeCCCCccccCHHHHHHHHh
Confidence 333 23566666 78888888874
No 122
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=1.4e-14 Score=114.65 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|+|||||++.++.... .. ....|.... ...+.. ++ ..+.+|||||.... ...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VE---KYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQF-----------TAM 65 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-Cc---ccCCcchheEEEEEEE-CCEEEEEEEEECCCcccc-----------hhH
Confidence 5899999999999999999885432 11 111222111 122333 33 34578999995431 112
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|.++.-+-.+ ..++..+..... ....|+++|.||+|+... ..+... ....+...
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~~ 135 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE--RVVGKE-------QGQNLARQ 135 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc--cEEcHH-------HHHHHHHH
Confidence 2224467899999999873332222 223344433221 112399999999998643 111100 01122233
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..++ .+||+++.++.+++..+.+.+
T Consensus 136 ~~~~~~------~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 136 WGCAFL------ETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred hCCEEE------EeeCCCCCCHHHHHHHHHHHh
Confidence 333332 568888999999999887654
No 123
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=2e-14 Score=114.45 Aligned_cols=156 Identities=18% Similarity=0.157 Sum_probs=91.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
..+|+++|.+|||||||++.+++... ......+. ......+.+ .+ ..+.++||||... +.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~ 70 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF----PPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FR 70 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence 37999999999999999999986543 11112222 222222333 34 3467899999432 12
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
......+..+|++++|+|+++..+... ..++..+........ |+++|.||+|.... ..+...+. ..+.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~--~~i~v~NK~D~~~~--~~i~~~~~-------~~~~ 139 (169)
T cd04114 71 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKV--ITILVGNKIDLAER--REVSQQRA-------EEFS 139 (169)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECcccccc--cccCHHHH-------HHHH
Confidence 222234467899999999873322221 233444444433333 88999999998644 22111111 1111
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
......+ ...|+.++.++.++++.+.+.
T Consensus 140 ~~~~~~~------~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 140 DAQDMYY------LETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred HHcCCeE------EEeeCCCCCCHHHHHHHHHHH
Confidence 2212222 256888899999999988764
No 124
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.63 E-value=8.4e-15 Score=136.35 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=104.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+++|+.|+|||||++.|.+..... ...++.|.....+.+.+.++..+++|||||..+. ....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~--~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQ--GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc--ccCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence 34799999999999999999999865422 1223455555555555534458999999996542 1122
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+++++.........+..+.. .+- |+++++||+|+.....+.+.+.+.. ..-....++
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~v----PiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~ 222 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-ANV----PIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG 222 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cCC----CEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence 234567899999999986666666655554433 232 8999999999864322333333332 111112222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+... ..+.||.++.++.+|++.+..
T Consensus 223 ~~~~----~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GDTI----FVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCce----EEEEECCCCCChHHHHHhhhh
Confidence 2211 236799999999999998754
No 125
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=2.7e-14 Score=116.88 Aligned_cols=160 Identities=14% Similarity=0.061 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|..|+|||||++.+++... ......|.. .....+.+. ....+.+|||||... +..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~----~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF----SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhh
Confidence 3799999999999999999987653 111222332 222233332 134568999999532 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhc--ccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.....+.+++++++|+|++++-+-... .++..+..... .....|++||.||+|+........++ ...+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---------~~~~ 136 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ---------MDQF 136 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH---------HHHH
Confidence 233345789999999999843332222 23333333211 11223899999999986320011111 2223
Q ss_pred HHhcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+ ..++ .+|++++.++.++++.+.+.+.
T Consensus 137 ~~~~~~~~~~------e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 137 CKENGFIGWF------ETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred HHHcCCceEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33333 1222 5688889999999998877664
No 126
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.63 E-value=2e-14 Score=113.78 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC-CcccccCCCCCcceeeEe--EEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEM--KTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~-~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
++|+++|.+|+|||||++.|.+. ..+. .....|....+ ..+... ....+.+|||||. +.+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------~~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFP---KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ-----------ELYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC---ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH-----------HHHH
Confidence 47999999999999999999854 2222 12222332222 222221 2357789999993 2222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
......+..+|++++|+|+++.-+-.. ..++..+.... ...|+++|.||+|+... ..+.... ...+.
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~ 134 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDAQ-------AQAFA 134 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHHH-------HHHHH
Confidence 223334568999999999984322221 23444444332 12389999999998654 2211110 11111
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+..++ ..|+.++.++.++++.+.+.+
T Consensus 135 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 135 QANQLKFF------KTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHcCCeEE------EEeCCCCCChHHHHHHHHHHh
Confidence 22222222 467888999999999877653
No 127
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.63 E-value=2.3e-15 Score=112.37 Aligned_cols=141 Identities=23% Similarity=0.289 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.||+|||+.|||||||+++|.|... .... |....+. + .+|||||-+-. ...+..++..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~----~~~K--Tq~i~~~-----~----~~IDTPGEyiE-------~~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI----RYKK--TQAIEYY-----D----NTIDTPGEYIE-------NPRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC----CcCc--cceeEec-----c----cEEECChhhee-------CHHHHHHHHH
Confidence 5899999999999999999998765 2222 2221111 1 26999996542 2334444444
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
....+|++++|.|++.+.+.---. +...|.. |+|-|+||+|+...+ ..++. ....+...|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~----fa~~f~~----pvIGVITK~Dl~~~~-~~i~~---------a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPG----FASMFNK----PVIGVITKIDLPSDD-ANIER---------AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCch----hhcccCC----CEEEEEECccCccch-hhHHH---------HHHHHHHcCCC
Confidence 445889999999998332211111 2233443 999999999998321 33332 23344444443
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.. ..+|+.++.++.+|.+.+.
T Consensus 122 ~i-----f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EI-----FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred Ce-----EEEECCCCcCHHHHHHHHh
Confidence 32 3567888999999999875
No 128
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.63 E-value=3.6e-14 Score=113.26 Aligned_cols=162 Identities=17% Similarity=0.102 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|++|+|||||+|.+++..... ....+.........+.+ .+. .+.+|||||... +....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHH
Confidence 379999999999999999999775411 11111122222222334 333 456899999432 11222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+.++|++++++|++++-+-... .+...+...+.. ....|+++|+||+|+........+ . ...++.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 137 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTK-K--------AQQWCQ 137 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHH-H--------HHHHHH
Confidence 2344688999999998743322222 222222222221 112399999999999742101122 1 222333
Q ss_pred hcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+ ..++ ..|+.++.++.++++.+.+.+..
T Consensus 138 ~~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 138 SNGNIPYF------ETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred HcCCceEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 333 2222 46788899999999988876543
No 129
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.63 E-value=1.3e-14 Score=114.91 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=90.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+|+|..|+|||||+|.+.+.... . ....|.. ........ ++ ..+.+|||||..... .+ .
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~-~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~--------~~---~ 65 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV-D---DYDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS--------AM---R 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-c---ccCCchhhhEEEEEEE-CCEEEEEEEEECCCcccch--------HH---H
Confidence 7999999999999999999976541 1 1111211 11122223 33 356789999965421 11 1
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHH-HHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-DFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~-~~l~~~~~~~~~~~~~~ 175 (352)
...+.+++++++|++++++-+-... .+...+...... ...|+++|.||+|+... ..+. +. ...+...
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~--~~~~~~~--------~~~~~~~ 134 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE--RVVSTEE--------GKELARQ 134 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceEcHHH--------HHHHHHH
Confidence 2234578999999998843222221 223333332221 12389999999998653 1111 11 1223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++ ++|++++.++.++++.+.+.+.
T Consensus 135 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 135 WGCPFL------ETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cCCEEE------EeecCCCCCHHHHHHHHHHHHh
Confidence 333332 5688889999999998876543
No 130
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.63 E-value=3.2e-14 Score=128.66 Aligned_cols=123 Identities=18% Similarity=0.160 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+.+|+|+|++|+|||||+|.|++.........+ +.|.......+.+ ++..+.+|||||+.+.....+. ..+ ...
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~p-gtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~--~gi-~~~ 276 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIK-GTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVER--LGI-EKS 276 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCC-CcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHH--HHH-HHH
Confidence 4579999999999999999999987532122222 2244444444555 7888999999998753211111 111 112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
..++..+|++++|+|++++.+..+. ++..+.. .+ .|+++|+||+|+..
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-~~----~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-SK----KPFILVLNKIDLKI 324 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-CC----CCEEEEEECccCCC
Confidence 2345689999999999866665544 3333322 12 28999999999863
No 131
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.63 E-value=6e-15 Score=119.79 Aligned_cols=167 Identities=8% Similarity=-0.013 Sum_probs=93.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|++|+|||||++.|.+..... ...|.......+.+ ++..+.++||||... .....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~-----~~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~~ 80 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ-----HVPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRLW 80 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc-----cCCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 45899999999999999999999865411 11122222333444 577888999999432 11222
Q ss_pred hcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhH---HHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPL---KEI 172 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~---~~~ 172 (352)
...+.+++++++|+|+++.-+-. ....+..+... ......|++++.||+|+... ....+.+++.. ..... ..+
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~ 158 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGAVSEEELRQALGL-YGTTTGKGVSL 158 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCCcCHHHHHHHhCc-ccccccccccc
Confidence 23446889999999987321111 11222222211 11122499999999998643 11223332221 00000 000
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.+.....+ ....+||+++.|+.++++++...
T Consensus 159 ~~~~~~~~----~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPI----EVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeE----EEEEeEecCCCChHHHHHHHHhh
Confidence 00001111 12467999999999999988653
No 132
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.63 E-value=1.4e-14 Score=114.43 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+++|++|+|||||++.|++..... ......+.......+.+.. ...+.++||||.... .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP--DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--ccCCcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhH
Confidence 479999999999999999999775411 1111122222222223311 246789999995331 11112
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+.++|++++|+|.++.-+.... .++..+..... ....|+++|.||+|+.... ...++ ...+....+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~~ 136 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKHN 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHcC
Confidence 234678999999998833332222 23444444322 2233899999999987431 11121 112222222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
-.+ .+.|+.++.++.++++.+.+
T Consensus 137 ~~~------~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 137 MLF------IETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred CEE------EEEecCCCCCHHHHHHHHHH
Confidence 222 25677888999999987654
No 133
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.63 E-value=4e-14 Score=115.61 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=93.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
..+|+|+|..|+|||||++.+++... ......|. ......+.+ .+ ..+.||||||... +.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~ 69 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF----SGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQER-----------FR 69 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC----CCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchh-----------HH
Confidence 47999999999999999999987654 11111222 222222333 23 3577999999432 11
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEI 172 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~ 172 (352)
......+.+++++++|+|++++-+-.. ..++..+..... . .|++||.||+|+... ..+ .+. ...+
T Consensus 70 ~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~--~piivVgNK~Dl~~~--~~~~~~~--------~~~~ 136 (199)
T cd04110 70 TITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-D--VCKVLVGNKNDDPER--KVVETED--------AYKF 136 (199)
T ss_pred HHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccccc--cccCHHH--------HHHH
Confidence 222334467899999999984333222 234444444322 2 389999999998754 211 111 2223
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+..++ .+|+.++.++.++++.+...+.
T Consensus 137 ~~~~~~~~~------e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 137 AGQMGISLF------ETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HHHcCCEEE------EEECCCCcCHHHHHHHHHHHHH
Confidence 333333333 4677888999999998877654
No 134
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3e-14 Score=109.64 Aligned_cols=164 Identities=17% Similarity=0.184 Sum_probs=110.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
-.+|+|+|.+|+|||-|+..+.+...... ...++.++.....+.+ +|. .+.||||.| .+++...
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAG-----------QERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVEL-DGKTIKLQIWDTAG-----------QERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeee-cceEEEEEeeeccc-----------cHHHhhh
Confidence 36999999999999999999987765221 1222334555555555 444 568999999 5667777
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+|+++|++|+|+|++..-|-. -..|+..+.......+ |.++|.||+|+.+. ..+..-. .+.+...
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~--~~v~~~~-------a~~fa~~ 143 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK--RVVSTEE-------AQEFADE 143 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh--eecCHHH-------HHHHHHh
Confidence 888999999999999999444322 2346666766655554 89999999998765 2221100 1122222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcC
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~ 212 (352)
.+-..+ .++||+...++.+.+..+...+....
T Consensus 144 ~~~~~f-----~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 144 LGIPIF-----LETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred cCCcce-----eecccCCccCHHHHHHHHHHHHHHhc
Confidence 222212 25688888999999988887776543
No 135
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.62 E-value=2.4e-14 Score=116.56 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe--EEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+|+|.+|+|||||++.+++.... .. ....|....+ ..+.. ++. .+.+|||||.... ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~--~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VG--PYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERY-----------EA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-Cc--CcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhh-----------hh
Confidence 37999999999999999999976541 11 1122222222 22333 343 4568999995431 11
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|+++.-+-.. ..++..+... .. ..|+++|.||+|+.... .... .+.. .....+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~--~~piilv~nK~Dl~~~~-~~~~-~v~~---~~~~~~~~ 137 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EE--HCKIYLCGTKSDLIEQD-RSLR-QVDF---HDVQDFAD 137 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CC--CCCEEEEEEcccccccc-cccC-ccCH---HHHHHHHH
Confidence 12234468999999999983322221 2344444443 21 23899999999986431 0000 0000 01222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|+.++.++.+|++.+.+.+.
T Consensus 138 ~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 138 EIKAQHF------ETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3333332 4578888999999999887653
No 136
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.62 E-value=3.3e-14 Score=111.89 Aligned_cols=161 Identities=24% Similarity=0.191 Sum_probs=94.1
Q ss_pred EEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCC
Q 018636 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (352)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (352)
|+|+.|+|||||+|.|++......... .+.+............+..+.++||||+.+...........+ ...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~----~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPV-PGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA----RRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCC-CCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH----HHHHHh
Confidence 589999999999999998765322222 222333333333332367889999999987654333211122 223357
Q ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH-hcCCcEEE
Q 018636 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-LCDNRCVL 182 (352)
Q Consensus 104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~ 182 (352)
+|++++|+++....+......+..+.. .. .|+++|+||+|.... ......... ...... .....+
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-~~----~~~ivv~nK~D~~~~--~~~~~~~~~-----~~~~~~~~~~~~~-- 141 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-RG----KPVLLVLNKIDLLPE--EEEEELLEL-----RLLILLLLLGLPV-- 141 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CeEEEEEEccccCCh--hhHHHHHHH-----HHhhcccccCCce--
Confidence 899999999985555544442222221 22 289999999998865 433332210 000111 111122
Q ss_pred EcCCCcccccchHHHHHHHHHHHHH
Q 018636 183 FDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 183 ~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
...|+.++.++.++++.+.+.
T Consensus 142 ----~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 142 ----IAVSALTGEGIDELREALIEA 162 (163)
T ss_pred ----EEEeeeccCCHHHHHHHHHhh
Confidence 245667778899998887654
No 137
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.62 E-value=3.9e-14 Score=111.84 Aligned_cols=157 Identities=16% Similarity=0.102 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+|+++|..|+|||||+|.+++..... ....+.+.......+... ....+.+|||||... +.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE--KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence 379999999999999999999775411 111111112212222221 123578999999322 112222
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~~~ 176 (352)
..+..+|++++|+|+++.-+.... .++..+...... ..|+++++||+|.... ..+ .+. ...+....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~--~~~~~~~--------~~~~~~~~ 135 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ--RVVSKSE--------AEEYAKSV 135 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCCCHHH--------HHHHHHHc
Confidence 234678999999998733222222 233344443332 2389999999998744 111 111 22222332
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
+..++ ..|+.++.++.++++.+.+.
T Consensus 136 ~~~~~------~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 136 GAKHF------ETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHH
Confidence 33332 45778889999999987654
No 138
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.62 E-value=1.6e-14 Score=116.06 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc------cccc--CC-----CCCcceeeEeEEEEe----eCCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA------FKAS--AG-----SSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~------~~~~--~~-----~~~~t~~~~~~~~~~----~~~~~~~lvDtpG~~~~ 82 (352)
.+|+++|.+|+|||||++.|++... +... +. ..+++.........+ ..+..+.+|||||..+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 3699999999999999999986421 0000 00 001222221111222 12456789999997542
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
.. ....++.++|++++|+|++...+..+...+..+.. .+ .|+++|+||+|+... . ..+...
T Consensus 81 -------~~----~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-~~----~~iiiv~NK~Dl~~~--~-~~~~~~ 141 (179)
T cd01890 81 -------SY----EVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-NN----LEIIPVINKIDLPSA--D-PERVKQ 141 (179)
T ss_pred -------HH----HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-cC----CCEEEEEECCCCCcC--C-HHHHHH
Confidence 11 22223457899999999986565555544433322 12 289999999998643 1 111112
Q ss_pred ccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
. +...+ +... ......|+.++.++.+|++.+...+
T Consensus 142 ~-----~~~~~---~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 142 Q-----IEDVL---GLDP---SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred H-----HHHHh---CCCc---ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2 22222 2110 1123678889999999999887654
No 139
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=1.9e-14 Score=116.52 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|..|+|||||++.+++... ......|. ......+.. ++ ..+.+|||||... +..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~ 64 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF----SESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQER-----------FRS 64 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHh
Confidence 3799999999999999999997764 11112222 222223333 33 3467899999432 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|++++-+-... .++..+....+.. .|++++.||.|+... ..+.... ...+..
T Consensus 65 ~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~ 133 (188)
T cd04125 65 LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN--KVVDSNI-------AKSFCD 133 (188)
T ss_pred hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc--ccCCHHH-------HHHHHH
Confidence 223345689999999999843322221 2334444433322 389999999998744 2211110 111222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|+.++.+++++++.+.+.+.
T Consensus 134 ~~~~~~~------evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 134 SLNIPFF------ETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2222333 4677888999999988777653
No 140
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=7.6e-14 Score=114.81 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|..|+|||||++.+++..... ....++........+.+.++ ..+.+|||||... +....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~--~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE--VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHHH
Confidence 789999999999999999999765411 11111222222222333233 3578999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-.. ..++..+...... ...+++||.||.|+.... ....+. ...+....
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~-~v~~~~--------~~~~~~~~ 139 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQR-QVTREE--------AEKLAKDL 139 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccccc-ccCHHH--------HHHHHHHh
Confidence 334578899999999984332222 2334444433321 112678889999986531 111111 12233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+..++ .+|++++.++.++++.+.+.+.
T Consensus 140 ~~~~~------e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 140 GMKYI------ETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 43333 4678889999999998877553
No 141
>PTZ00369 Ras-like protein; Provisional
Probab=99.61 E-value=2.6e-14 Score=115.83 Aligned_cols=159 Identities=21% Similarity=0.164 Sum_probs=92.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||++.+.+..... ....|.... ...+.+ ++ ..+.+|||||..+.. .
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~--- 68 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID----EYDPTIEDSYRKQCVI-DEETCLLDILDTAGQEEYS--------A--- 68 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc----CcCCchhhEEEEEEEE-CCEEEEEEEEeCCCCccch--------h---
Confidence 4899999999999999999998765311 111122111 112223 33 346789999965421 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.+++++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ..+.... ...+..
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~ 138 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE--RQVSTGE-------GQELAK 138 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--cccCHHH-------HHHHHH
Confidence 12224468899999999984333222 233333433322 112389999999997543 1111100 111222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||.++.++.+++..+.+.+.
T Consensus 139 ~~~~~~~------e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 139 SFGIPFL------ETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred HhCCEEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 2232332 5688889999999998876653
No 142
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.61 E-value=7.3e-14 Score=116.27 Aligned_cols=87 Identities=24% Similarity=0.280 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|.+|+|||||+|.|+|...... .. ...|.......+.+ .+..+.++||||+.+...........+ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~-~~-~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA-AY-EFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc-CC-CCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 789999999999999999998764211 11 11233333333444 678899999999876432222212222 234
Q ss_pred cCCccEEEEEEecC
Q 018636 101 KDGIHAFLVVFSVT 114 (352)
Q Consensus 101 ~~~~~~~l~v~~~~ 114 (352)
+..+|++++|+|++
T Consensus 75 ~~~ad~il~V~D~t 88 (233)
T cd01896 75 ARTADLILMVLDAT 88 (233)
T ss_pred hccCCEEEEEecCC
Confidence 56889999999876
No 143
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.61 E-value=2.5e-14 Score=117.60 Aligned_cols=113 Identities=22% Similarity=0.172 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+++|..|+|||||++.+++..... ...|....++...+ ....+.+|||||.... ..+ ...
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-----~~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~--------~~l---~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-----TVSTVGGAFYLKQW-GPYNISIWDTAGREQF--------HGL---GSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-----CCCccceEEEEEEe-eEEEEEEEeCCCcccc--------hhh---HHH
Confidence 479999999999999999998766411 11232222222222 3456889999996432 111 222
Q ss_pred ccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
.+.++|++++|+|++++-+-... .++..+........ |++||.||+|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~--piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDC--LFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccccc
Confidence 35689999999999854333332 23333333323323 8999999999864
No 144
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.61 E-value=9.5e-15 Score=139.21 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=104.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|+.++|||||++.|.+..... ...+++|.....+.+.+ ++..++||||||..+.. ...
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~--~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m~ 354 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAA--GEAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AMR 354 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc--cccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hHH
Confidence 34799999999999999999998765421 12344565565666666 67889999999965531 111
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+++++.........+..+.. .+- |++|++||+|+...+...+...+.. ..-+...++
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~~v----PiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g 424 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-AGV----PIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWG 424 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-cCC----cEEEEEECccccccCHHHHHHHHHH-----hcccHHHhC
Confidence 223457899999999986666666666655443 232 8999999999864311122222211 111112222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..+ ...++||.++.++.+|++.|..
T Consensus 425 ~~v----p~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 425 GDT----IFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCc----eEEEEeCCCCCCchHHHHhhhh
Confidence 222 1235789999999999998864
No 145
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.61 E-value=3.8e-14 Score=111.78 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=90.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
+|+++|.+|+|||||++.+++... ......|.. .....+.. .+ ..+.+|||+|... +...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF----HSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC----CCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhh
Confidence 799999999999999999987654 111122222 22223333 33 3567899999432 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|++++-+-.+ ..++..+....... .|+++|.||.|+... ..+ .+. ...+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~v~~~~--------~~~~~~ 133 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQK--RQVGDEQ--------GNKLAK 133 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCHHH--------HHHHHH
Confidence 3334568899999999984333222 23344443332222 389999999998644 211 111 112222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..+..|+ ++||+++.++.+++..+.+.
T Consensus 134 ~~~~~~~------e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 134 EYGMDFF------ETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHhh
Confidence 2333332 56888889999999987653
No 146
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.61 E-value=7.6e-14 Score=112.07 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|..|+|||||++.+.+... ......|....+ ..+.. ++ ..+.+|||+|... +..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f----~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF----DEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHH
Confidence 3799999999999999999987643 111222332222 23333 33 3568999999432 223
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcc-hhcHHHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~-~~~l~~~l~~~~~~~~~~~~ 173 (352)
....++.++|++++|+|++++-+-.+. .++..+....... .| ++|.||+|+.... ....+..... ...+.
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a 136 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYA 136 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHH-----HHHHH
Confidence 333456789999999999854443332 3445554432222 25 6789999985320 0111111111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ ++||+++.++.++++.+.+.+.
T Consensus 137 ~~~~~~~~------e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 137 KAMKAPLI------FCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33333332 5688899999999998876553
No 147
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.61 E-value=4.1e-14 Score=112.74 Aligned_cols=160 Identities=17% Similarity=0.068 Sum_probs=91.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+++|.+|+|||||++.+++...... . ..+.........+.+ ++ ..+.+|||||. +.+..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~-----------~~~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-L-FHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQ-----------ERFRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcC-c-CCceeeEEEEEEEEE-CCeEEEEEEEeCCCh-----------HHHHH
Confidence 448999999999999999999987654111 1 111112221222333 33 35678999993 22333
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.....+.++|++++|++++++-+-... .++..+...... ....|+++|.||+|+... ....+. ...+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~ 139 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER--QVSTEE--------AQAW 139 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc--ccCHHH--------HHHH
Confidence 333455788999999998843322222 233333332211 112389999999998643 211111 2233
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
....+...+ ..+|+.++.++.++++.+.+
T Consensus 140 ~~~~~~~~~-----~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 140 CRENGDYPY-----FETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHCCCCeE-----EEEECCCCCCHHHHHHHHHh
Confidence 333332222 25678888999999887654
No 148
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.61 E-value=3.9e-14 Score=112.78 Aligned_cols=164 Identities=20% Similarity=0.182 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|+|||||+..+..... .. ....|....+ ..+.. ++ ..+.+|||+|.... ...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~---~~~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~-----------~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PT---DYIPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDY-----------NRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CC---CCCCcceeeeEEEEEE-CCEEEEEEEEECCCCccc-----------ccc
Confidence 5899999999999999999986543 21 1222322211 12233 33 45689999995432 122
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh--cccCChhHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL--GHECPKPLKEI 172 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l--~~~~~~~~~~~ 172 (352)
....+.+++++++|+|.+++-+-.. ..++..+....+ .+ |++||.||+|+.... ....... ..-.......+
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~--piilvgnK~Dl~~~~-~~~~~~~~~~~v~~~~~~~~ 141 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NV--PIVLVGTKLDLRDDK-QYLADHPGASPITTAQGEEL 141 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CC--CEEEEEeChhhccCh-hhhhhccCCCCCCHHHHHHH
Confidence 2335678999999999985555443 246666655433 33 899999999986430 0000000 00000112233
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+...++ .+||+++.++.++++.+.+.+
T Consensus 142 a~~~~~~~~~-----E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 142 RKQIGAAAYI-----ECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHcCCCEEE-----ECCCCcccCHHHHHHHHHHHH
Confidence 3333322122 578889999999999887765
No 149
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.61 E-value=5e-14 Score=112.38 Aligned_cols=162 Identities=17% Similarity=0.086 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|+|||||+..+.+... +.....|....+ ..+.. ++ ..+.+|||||.... ...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DRL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC----CCcCCCcceeeeEEEEEE-CCEEEEEEEEECCCchhh-----------hhh
Confidence 6899999999999999999886543 111112221111 12222 33 45679999995331 122
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCChhHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECPKPLK 170 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~~~~~ 170 (352)
....+.++|++++|+|++++-+-... .++..+..... . .|++||.||.|+.... ...+..... .......
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHH
Confidence 23345789999999999843333332 24444444322 2 3999999999986430 112111110 0001122
Q ss_pred HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.+....+.-.+ ..+||+++.++.++++.+.+
T Consensus 142 ~~~~~~~~~~~-----~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIGAVKY-----LECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcCCcEE-----EEecccccCCHHHHHHHHHH
Confidence 23333332111 26788999999999987654
No 150
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.61 E-value=2.7e-14 Score=113.89 Aligned_cols=162 Identities=17% Similarity=0.061 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|..|+|||||++.|++... ......+... ........ ....+.+|||||...... ..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-----------~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF----PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-----------LR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-----------cc
Confidence 4799999999999999999998764 1111111111 11112221 134578999999664211 11
Q ss_pred hcccCCccEEEEEEecCCCCCH--HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh----cccCChhHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQ--EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL----GHECPKPLKE 171 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l----~~~~~~~~~~ 171 (352)
...+..+|++++|+|.+++-+- ....++..+..... ..|+++|+||+|+... ......+ ..........
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~ 140 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEK 140 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHH
Confidence 1233678999999999833222 22234444444322 2399999999998765 2221100 0000001122
Q ss_pred HHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+....+...+ ...|+.++.++.++++.|.+
T Consensus 141 ~~~~~~~~~~-----~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 141 LAKEIGAIGY-----MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHhCCeEE-----EEeecCCCCCHHHHHHHHhh
Confidence 2233232112 25677888999999987754
No 151
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.60 E-value=2.7e-14 Score=114.28 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=92.5
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
|+|+|..|+|||||++.+++... ......+....+ ..+.. ++. .+.+|||||..... ....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF----PEDYVPTVFENYSADVEV-DGKPVELGLWDTAGQEDYD-----------RLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC----CCCCCCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccc-----------hhch
Confidence 68999999999999999997654 111122222211 12223 333 47899999954321 1122
Q ss_pred cccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc----CChhHHHH
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKEI 172 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~----~~~~~~~~ 172 (352)
..+.++|++++|+|+++.-+-... .++..+..... ..|+++|.||+|+.... ...+++.... .......+
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~ 140 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEAL 140 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHH
Confidence 345689999999999843222222 34444544332 23999999999987531 1121111100 00112233
Q ss_pred HHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+. .++ .+|++++.++.++++.+.+.+
T Consensus 141 ~~~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 141 AKRIGAVKYL------ECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHHcCCcEEE------EecCCCCCCHHHHHHHHHHHh
Confidence 333332 332 468888999999999876654
No 152
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.60 E-value=5.7e-14 Score=112.48 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|||||||++.+.+... +.....|.... ...+.+ ++ ..+.+|||||.... ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF----PEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDY-----------DRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCccccceEEEEEE-CCEEEEEEEEeCCCchhh-----------hhc
Confidence 5899999999999999999997653 11111222211 122233 33 35689999995431 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCC-----hhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~-----~~~ 169 (352)
....+.++|++++|++++++-+-.. ..++..+..... . .|+++|.||+|+... ....+.+..... ...
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHH
Confidence 1234568899999999883322112 223444443322 2 399999999998654 222221111000 011
Q ss_pred HHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..+...++...+ ..+||+++.++.++++.+.+.
T Consensus 141 ~~~~~~~~~~~~-----~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 141 RDMANKIGAFGY-----MECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHcCCcEE-----EEeccccCcCHHHHHHHHHHH
Confidence 222222222112 257888999999999987654
No 153
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=1e-13 Score=114.62 Aligned_cols=166 Identities=11% Similarity=0.038 Sum_probs=98.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|..|+|||||++.+++... . .....|....+ ..+.+ ++ ..+.||||+|-. .+
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F-~---~~y~pTi~~~~~~~i~~-~~~~v~l~iwDTaG~e-----------~~ 74 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCY-P---ETYVPTVFENYTAGLET-EEQRVELSLWDTSGSP-----------YY 74 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCC-C---CCcCCceeeeeEEEEEE-CCEEEEEEEEeCCCch-----------hh
Confidence 3457999999999999999999987643 2 11222222111 12223 33 457899999932 22
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc---ccCC-h
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG---HECP-K 167 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~---~~~~-~ 167 (352)
......++.++|++++|+|++++-+-.. ..++..+..... .. |++||.||+|+.... ..+.+... .... .
T Consensus 75 ~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~--piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs~~ 150 (232)
T cd04174 75 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-ST--RILLIGCKTDLRTDL-STLMELSNQKQAPISYE 150 (232)
T ss_pred HHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccccccc-chhhhhccccCCcCCHH
Confidence 2233345689999999999985444332 345566665433 22 899999999975321 11111000 0000 1
Q ss_pred hHHHHHHhcCC-cEEEEcCCCcccccchH-HHHHHHHHHHHHH
Q 018636 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (352)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~~ 208 (352)
....+....+. .|+ .+||+++. ++.+++..+...+
T Consensus 151 e~~~~a~~~~~~~~~------EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 151 QGCALAKQLGAEVYL------ECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHHHHHHcCCCEEE------EccCCcCCcCHHHHHHHHHHHH
Confidence 13334444443 232 56888886 7999999876654
No 154
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.60 E-value=2.4e-14 Score=135.23 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=102.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|+.|+|||||++.|.+..... ...+++|.....+.+.+. .+..+++|||||.. .+.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~--~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-----------~F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQ--KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-----------AFS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCcc--ccCCccccccceEEEEEEecCCceEEEEEECCcHH-----------HHH
Confidence 34799999999999999999998765421 112334444444444332 35789999999943 233
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
......+..+|++++|+++++.........+..+.. .+ .|+++++||+|+.......+.+.+.. +.-+..
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~~----iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~e 379 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-AN----VPIIVAINKIDKANANTERIKQQLAK-----YNLIPE 379 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-cC----ceEEEEEECCCccccCHHHHHHHHHH-----hccchH
Confidence 333334467899999999986666666666665543 23 29999999999875411122222221 110111
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..++.+ ...++||.++.++.+|++.+..+.
T Consensus 380 ~~g~~v----pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDT----PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCc----eEEEEECCCCCCHHHHHHhhhhhh
Confidence 122111 123678999999999999887654
No 155
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.60 E-value=3.3e-14 Score=117.31 Aligned_cols=119 Identities=18% Similarity=0.077 Sum_probs=78.7
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeC
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk 146 (352)
.+..++++||||..+ ........+.. ..+|++++|+++...+...+...+.++... +. |+++++||
T Consensus 82 ~~~~i~liDtpG~~~-------~~~~~~~~~~~--~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~i----p~ivvvNK 147 (224)
T cd04165 82 SSKLVTFIDLAGHER-------YLKTTLFGLTG--YAPDYAMLVVAANAGIIGMTKEHLGLALAL-NI----PVFVVVTK 147 (224)
T ss_pred CCcEEEEEECCCcHH-------HHHHHHHhhcc--cCCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEC
Confidence 467899999999432 12222222211 368999999999878888888888887764 43 89999999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcCCc--------------------EEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR--------------------CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+|.... ..+.+.+.. +...+...+.. ...+-+...+|+.++.|+++|...+..
T Consensus 148 ~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 148 IDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 998765 556555554 44444321111 001113445689999999999988754
No 156
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.60 E-value=1.2e-13 Score=111.99 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=95.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+++|..|+|||||++.+..... +.....|....+. .+.+ ++ ..+.+|||+|... +..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~ 66 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF----PKEYIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEE-----------YDR 66 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC----CcCCCCceEeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 37999999999999999999886543 1112223222111 1223 33 4568899999432 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc---cCC-hhH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPL 169 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~---~~~-~~~ 169 (352)
....++.++|++++|+|++++-+-... .++..+..... . .|++||.||.|+.... ...+..... ... ...
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~ 142 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-N--VPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQG 142 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHH
Confidence 333456789999999999844433332 23343443322 2 3999999999986431 111111110 000 112
Q ss_pred HHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+....+. .|+ .+||+++.++.+++..+.+.+.
T Consensus 143 ~~~a~~~~~~~~~------e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 143 GALAKQIHAVKYL------ECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHHHcCCcEEE------EeCCCCCCCHHHHHHHHHHHHh
Confidence 223333332 233 5688889999999998887653
No 157
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.60 E-value=6.6e-14 Score=110.81 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++..... ....++..........+ ...+.+|||||.... ....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVE----DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcc----ccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHH
Confidence 379999999999999999998765411 11111111111111113 245788999995432 1122
Q ss_pred hcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+...+++++|+++++.-+-. -..++..+..... ....|+++|+||+|+.........+ ...+....
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~ 135 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQW 135 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHh
Confidence 22345779999999987322211 1223333333211 1223999999999987521011111 11222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..+ ...|+.++.++.+|++.+.+.+
T Consensus 136 ~~~~------~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 136 GVPY------VETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCeE------EEeeCCCCCCHHHHHHHHHHHH
Confidence 3233 3568888999999999887654
No 158
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.60 E-value=1e-13 Score=111.00 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+++|..|+|||||++.+.+... ......|....+ ..+.+ ++ ..+.+|||+|.. .+.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f----~~~~~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e-----------~~~ 67 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF----PENYVPTVFENYTASFEI-DTQRIELSLWDTSGSP-----------YYD 67 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC----CCccCCceeeeeEEEEEE-CCEEEEEEEEECCCch-----------hhH
Confidence 347999999999999999999987653 112222322211 12233 33 357899999942 222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc---cCC-hh
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KP 168 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~---~~~-~~ 168 (352)
.....++.++|++++|+|++++-+-.. ..++..+..... . .|++||.||+|+.... ..+.+.... ... ..
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHH
Confidence 233445689999999999985544443 245566665443 2 3899999999985321 111110000 000 11
Q ss_pred HHHHHHhcCC-cEEEEcCCCcccccchHH-HHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~~~~~-~~~L~~~i~~~ 207 (352)
...+....+. .|+ .+||+++.+ +.+++..+...
T Consensus 144 ~~~~a~~~~~~~~~------E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 144 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHHcCCCEEE------ECCcCCCCCCHHHHHHHHHHH
Confidence 2334444443 333 568888998 99999877663
No 159
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.60 E-value=2.5e-14 Score=121.51 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=88.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccC-C-----CCCcceeeEeEEEEee-CC--ceEEEEeCCCCCCCCCCcHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-G-----SSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSEFV 89 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-~-----~~~~t~~~~~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~~~ 89 (352)
..+|.|+|.+|+|||||||+|++........ . ....+........... ++ ..++|+|||||++.... ...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhh
Confidence 3689999999999999999999876543320 0 0111222222222221 22 35789999999985432 222
Q ss_pred HHHHHHHH--------h---------cccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 90 GKEIVKCL--------G---------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 90 ~~~~~~~~--------~---------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
...+..++ . .....+|++||+++++ .+++..|...|+.+... + |+|-|+.|.|.++
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccC
Confidence 33332222 1 1124679999999987 67888888776665443 3 8999999999998
Q ss_pred cchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCC
Q 018636 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (352)
Q Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
. +.+..+... +...+...+-+++.|...
T Consensus 157 ~--~el~~~k~~-----i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 157 P--EELQAFKQR-----IREDLEENNIKIFDFPED 184 (281)
T ss_dssp H--HHHHHHHHH-----HHHHHHHTT--S------
T ss_pred H--HHHHHHHHH-----HHHHHHHcCceeeccccc
Confidence 7 888877666 777777777776665543
No 160
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.60 E-value=4.2e-14 Score=115.45 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=90.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+|+|.+|+|||||++.+++.... .....|. ......+.+ .+ ..+.++||||.... ..+ .
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~--------~~~---~ 64 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE----PKYRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSF--------PAM---R 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC----ccCCCchhhheeEEEEE-CCEEEEEEEEECCCchhh--------hHH---H
Confidence 5899999999999999999876541 1111121 112222333 33 46789999995442 111 1
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH-h
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-L 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-~ 175 (352)
...+.++|++++|+|+++..+-... .++..+..... ....|+++|+||+|..... ..+... . ...... .
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~-~~v~~~-~------~~~~~~~~ 135 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEE-RQVPAK-D------ALSTVELD 135 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccc-ccccHH-H------HHHHHHhh
Confidence 2245688999999998843222222 22233333322 1224999999999986521 111100 0 011111 1
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++ ..|+.++.++.++++.+.+.+.
T Consensus 136 ~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 136 WNCGFV------ETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cCCcEE------EecCCCCCCHHHHHHHHHHHhh
Confidence 111222 4688889999999999887664
No 161
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.60 E-value=8e-14 Score=111.01 Aligned_cols=117 Identities=20% Similarity=0.146 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|++|+|||||++.+++... +.....+. ......+.+ ++ ..+.+|||||.... ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------~~~--- 67 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF----PERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERF-------RKS--- 67 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC----CCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHH-------HHh---
Confidence 6899999999999999999987653 11112222 222222333 33 46789999994321 111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.....+.++|++++|+|++++-+-... .++..+..... ....|+++|.||+|+...
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQ 124 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhh
Confidence 123345688999999999844443333 33334443221 122399999999998644
No 162
>PLN03108 Rab family protein; Provisional
Probab=99.60 E-value=7.8e-14 Score=114.76 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=90.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||++.|++...... ...++........+.+ ++ ..+.+|||+|... +...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~--~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 37999999999999999999997654111 1111111211222233 33 3567999999432 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|+++.-+-... .++..+....... .|+++|.||+|+........++ ...+...
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~~~---------~~~~~~~ 140 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAHRRAVSTEE---------GEQFAKE 140 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccCCCHHH---------HHHHHHH
Confidence 22334678999999999833222222 3344343333222 3899999999986531011111 1122222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..++ .+|++++.++.+++..+.+.+
T Consensus 141 ~~~~~~------e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 141 HGLIFM------EASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 232222 457778889999887665443
No 163
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=1.2e-13 Score=110.52 Aligned_cols=163 Identities=15% Similarity=0.099 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||++.+.+... +.....|....+ ..+.+ ++ ..+.+|||+|... +...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~-----------~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY----PETYVPTVFENYTASFEI-DEQRIELSLWDTSGSPY-----------YDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC----CCCcCCceEEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhc
Confidence 5899999999999999999987653 112222322211 12233 33 3567999999432 2222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc---cCC-hhHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPLK 170 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~---~~~-~~~~ 170 (352)
....+.++|++++|+|++++-+-.. ..++..+..... .. |++||.||+|+.... ..+.+.-.. ... ....
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~--~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NT--KVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CC--CEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHH
Confidence 3345679999999999985544433 345666665543 23 899999999985321 111110000 000 1122
Q ss_pred HHHHhcCCcEEEEcCCCcccccchHH-HHHHHHHHHHH
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~~-~~~L~~~i~~~ 207 (352)
.+....+...++ .+||+++.+ +.+++..+.+.
T Consensus 142 ~~a~~~~~~~~~-----E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 142 AIAKQLGAEIYL-----ECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHHhCCCEEE-----ECccCcCCcCHHHHHHHHHHH
Confidence 333333321222 568888885 99999877663
No 164
>PLN03118 Rab family protein; Provisional
Probab=99.59 E-value=8.7e-14 Score=114.77 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=92.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..+|+|+|..|+|||||++.|++..... . ..+.........+.+.+ ...+.|+||||.... ....
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----------~~~~ 79 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVED--L-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF-----------RTLT 79 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC--c-CCCceeEEEEEEEEECCEEEEEEEEECCCchhh-----------HHHH
Confidence 4799999999999999999999865411 1 11112222223333312 246789999995431 1112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHH--HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+..+|++++|+|.+++-+-.... +...+.. +......|+++|.||+|+... ..+... ....+...
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~--~~i~~~-------~~~~~~~~ 149 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESE--RDVSRE-------EGMALAKE 149 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccc--CccCHH-------HHHHHHHH
Confidence 23346889999999998433222221 2222222 221112378999999998644 221100 01112222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..+ .++|+.++.+++++++.+...+..
T Consensus 150 ~~~~~------~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 150 HGCLF------LECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred cCCEE------EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 22222 256788889999999988876643
No 165
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.59 E-value=9.9e-14 Score=110.97 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||++.+.+... ......+..... ..+.+ ++ ..+.+|||||...... .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF----PEEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------L 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc-----------c
Confidence 3799999999999999999987654 111222222111 12223 33 3467899999654211 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCC-hhH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KPL 169 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~-~~~ 169 (352)
....+.++|++++|++.+++-+-... .++..+... ... .|+++|.||+|+... ......+.. ... ...
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 139 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLRDD--PKTLARLNDMKEKPVTVEQG 139 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhhcC--hhhHHHHhhccCCCCCHHHH
Confidence 12345688999999998843332222 344444433 222 389999999998644 111111100 000 011
Q ss_pred HHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..+....+...++ .+||.++.+++++++.+...
T Consensus 140 ~~~~~~~~~~~~~-----e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 140 QKLAKEIGAHCYV-----ECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHHcCCCEEE-----EecCCcCCCHHHHHHHHHHH
Confidence 2233333332222 56888999999999877654
No 166
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.59 E-value=9.3e-14 Score=113.04 Aligned_cols=116 Identities=16% Similarity=0.278 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC-CcccccC-------------CCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR-KAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~ 85 (352)
.+|+++|..|+|||||++.|++. ..+.... ...+.+.......+.+ .+..+.+|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 58999999999999999999863 1211110 0011222223333334 577889999999643
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+......++.++|++++|+|+++.........+..+.. .+ .|+++++||+|+...
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-~~----~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-LG----LKPIVVINKIDRPDA 132 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCCCCC
Confidence 22223334468899999999985443433333333322 12 289999999998643
No 167
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.58 E-value=9.6e-15 Score=120.53 Aligned_cols=163 Identities=18% Similarity=0.190 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..|++||.+|+|||||+|+|+.... ....+..|+ ...+..+.+.+...++|.|.||+......+.-+...+.+.+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp---kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP---KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC---cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 3689999999999999999997654 233444443 445555555445569999999999877666666777766655
Q ss_pred cccCCccEEEEEEecCCCC--CH-HHHHHHHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 99 MAKDGIHAFLVVFSVTNRF--SQ-EEETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~--~~-~~~~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.+..++||+|++... +. .+...|..-.+++.+ -..+|.+||.||+|..+.....|+ .+..
T Consensus 274 ----R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~------------~L~~ 337 (366)
T KOG1489|consen 274 ----RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLS------------SLAK 337 (366)
T ss_pred ----hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHH------------HHHH
Confidence 678999999998331 22 222222222222222 233489999999998643111112 2333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..... ++.+.||+++.++.+|++.+..
T Consensus 338 ~lq~~-----~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 338 RLQNP-----HVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HcCCC-----cEEEeeeccccchHHHHHHHhh
Confidence 33333 2347788899999999987654
No 168
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.58 E-value=3.7e-14 Score=112.19 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|.+|+|||||++.+++...... ...|. ......+.. ++. .+.+|||||..... ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK----YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCchhheEEEEEEE-CCEEEEEEEEECCCccccc-----------ch
Confidence 6899999999999999988886654211 11121 111222333 333 46789999954321 11
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|++++-+-.+ ..++..+..... ....|+++|.||+|+... ..+.... ...+...
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~~-------~~~~~~~ 135 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSAE-------GRALAEE 135 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHHH-------HHHHHHH
Confidence 1223467899999999984333222 233444444322 122389999999998643 1111100 1112222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.+..+ .++||.++.++.+++..+.+
T Consensus 136 ~~~~~------~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 136 WGCPF------METSAKSKTMVNELFAEIVR 160 (163)
T ss_pred hCCEE------EEecCCCCCCHHHHHHHHHH
Confidence 22222 25688888999999987754
No 169
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=8.2e-14 Score=115.40 Aligned_cols=160 Identities=21% Similarity=0.143 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcc-cccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|.+|+|||||++.+++.... ......+. .......+.+. ....+.+|||||... . +..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~--~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~----~~~-- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD--DDTYERTVSVDGEESTLVVIDHWEQEM------W----TED-- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc--ccceEEEEEECCEEEEEEEEeCCCcch------H----HHh--
Confidence 37999999999999999999755431 11111111 01112222221 235678999999651 0 111
Q ss_pred hcccC-CccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKD-GIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~-~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..+. ++|++++|+|++++-+-.. ..++..+.... .....|+++|.||+|+... ..+... . ...+...
T Consensus 67 -~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~--~~v~~~--~-----~~~~a~~ 135 (221)
T cd04148 67 -SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS--REVSVQ--E-----GRACAVV 135 (221)
T ss_pred -HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc--ceecHH--H-----HHHHHHH
Confidence 1123 7899999999984332221 23334343321 1122399999999998654 211100 0 1122222
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ ++||.++.++.++++.+...+..
T Consensus 136 ~~~~~~------e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 136 FDCKFI------ETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred cCCeEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 233333 56888899999999998877653
No 170
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.58 E-value=1.3e-13 Score=111.02 Aligned_cols=159 Identities=21% Similarity=0.213 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|.+|+|||||++.+++... . .....|.. ........ .+ ..+.+|||||... +...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~ 65 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-V---ESYYPTIENTFSKIIRY-KGQDYHLEIVDTAGQDE-----------YSIL 65 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-c---cccCcchhhhEEEEEEE-CCEEEEEEEEECCChHh-----------hHHH
Confidence 6899999999999999999997653 1 11111111 11122222 32 3567999999543 1111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..++++++|++.++.-+-... .++..+....+ ....|++++.||+|.... ..+... ....+...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~-------~~~~~~~~ 135 (180)
T cd04137 66 PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQ--RQVSTE-------EGKELAES 135 (180)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhc--CccCHH-------HHHHHHHH
Confidence 22234578999999998832222221 22233333222 112389999999998643 111110 01222233
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ +.|+.++.++.+++..+.+.+..
T Consensus 136 ~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 136 WGAAFL------ESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 332222 46778889999999998877654
No 171
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.58 E-value=8.2e-14 Score=109.76 Aligned_cols=154 Identities=21% Similarity=0.178 Sum_probs=88.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+++|+.|+|||||++.+++... .. ....+... ....+.. + ...+.++|+||... +....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 64 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VE---EYDPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMR 64 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-Cc---CcCCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 589999999999999999997753 22 22222221 1222223 3 24578999999543 11122
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+...|++++|++.++.-+..+ ..++..+..... ....|++++.||+|.........+ . ...+....
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~-~--------~~~~~~~~ 134 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKE-E--------GKALAKEW 134 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHH-H--------HHHHHHHc
Confidence 223457899999999873322222 223333333333 112399999999998753101111 1 22222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+..+ ...|+.++.++.++++.+.+
T Consensus 135 ~~~~------~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 135 GCPF------IETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCcE------EEeccCCCCCHHHHHHHHHh
Confidence 3222 25677788999999988764
No 172
>CHL00071 tufA elongation factor Tu
Probab=99.58 E-value=1e-13 Score=125.06 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=89.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCccccc--------------CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.++|||||+++|++....... ....+.|.......+.. ++..+.++||||..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~-- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA-- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH--
Confidence 45689999999999999999999875221000 00123344443333333 56788999999942
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHHh
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~l 161 (352)
.+...+..+...+|++++|+|+...+...+...+..+... +. | +++++||+|+.+. ..+.+.+
T Consensus 87 ---------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~----~~iIvvvNK~D~~~~--~~~~~~~ 150 (409)
T CHL00071 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV----PNIVVFLNKEDQVDD--EELLELV 150 (409)
T ss_pred ---------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEEccCCCCH--HHHHHHH
Confidence 2333333344578999999999877888888877776653 43 5 7788999999864 3333333
Q ss_pred cccCChhHHHHHHhcC
Q 018636 162 GHECPKPLKEILQLCD 177 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~ 177 (352)
.. .+..++..++
T Consensus 151 ~~----~l~~~l~~~~ 162 (409)
T CHL00071 151 EL----EVRELLSKYD 162 (409)
T ss_pred HH----HHHHHHHHhC
Confidence 22 2555555543
No 173
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.57 E-value=1.6e-13 Score=115.12 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|..|+|||||++.+++... .. ....|.. .....+.+ ++ ..+.||||+|.... ..+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~~---~y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~--------~~~--- 64 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-EE---QYTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPF--------PAM--- 64 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-CC---CCCCChhHhEEEEEEE-CCEEEEEEEEECCCChhh--------hHH---
Confidence 3799999999999999999986543 11 1122221 12222333 33 45679999995431 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhh-------cccccceEEEEEeCCCCCCcchhcHHHHhcccCChh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-------GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~-------~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~ 168 (352)
...++..+|++++|+|++++-+-.. ..++..+.... ......|+++|.||+|+........++
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e--------- 135 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE--------- 135 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------
Confidence 1223457899999999984333222 22333333220 011234999999999986421011121
Q ss_pred HHHHHHhc-CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 169 LKEILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..++... ...++ .+||.++.++++|++.+..+.
T Consensus 136 i~~~~~~~~~~~~~------evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 136 VEQLVGGDENCAYF------EVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHHhcCCCEEE------EEeCCCCCCHHHHHHHHHHHh
Confidence 22222211 11222 568888999999999988765
No 174
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.57 E-value=3.3e-14 Score=129.41 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=97.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cC---------------CCCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA---------------GSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~~~ 68 (352)
...+|+++|+.++|||||++.|++....-. +. ...+.|.......+.+ ++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence 458999999999999999999984322100 00 0233455555555555 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhcccccceEEEEEeC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk 146 (352)
..+.+|||||..+. ... +......+|++++|+|+++ .+.......+.++.. ++. .++++++||
T Consensus 84 ~~i~liDtpG~~~~-------~~~----~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivviNK 148 (425)
T PRK12317 84 YYFTIVDCPGHRDF-------VKN----MITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAINK 148 (425)
T ss_pred eEEEEEECCCcccc-------hhh----HhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEEEc
Confidence 88999999995432 111 1222357899999999986 555555555555543 342 268999999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHH
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
+|+.......+...... +..++...+.... .....++|+.++.++.+
T Consensus 149 ~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~-~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPD-DIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cccccccHHHHHHHHHH-----HHHHHHhhCCCcC-cceEEEeecccCCCccc
Confidence 99875311233333333 4445544332100 00123567777888775
No 175
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.57 E-value=1.1e-13 Score=110.06 Aligned_cols=161 Identities=14% Similarity=0.020 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||++.+++...... ....+.........+.+ ++ ..+.++||+|..... ..
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~~ 70 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLN-AYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAI-----------LL 70 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcc-cCCCccCcceEEEEEEE-CCeEEEEEEEecCCccccc-----------cc
Confidence 47999999999999999999998764101 11111112222223333 33 356788999854321 11
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...++.++|++++|+|++++-+- .....++..... ....|+++|.||+|+... ... .... ...+....
T Consensus 71 ~~~~~~~~d~~llv~d~~~~~s~--~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~--~~~--~~~~-----~~~~~~~~ 138 (169)
T cd01892 71 NDAELAACDVACLVYDSSDPKSF--SYCAEVYKKYFM-LGEIPCLFVAAKADLDEQ--QQR--YEVQ-----PDEFCRKL 138 (169)
T ss_pred chhhhhcCCEEEEEEeCCCHHHH--HHHHHHHHHhcc-CCCCeEEEEEEccccccc--ccc--cccC-----HHHHHHHc
Confidence 12234689999999999733211 111222222211 112399999999998643 110 0000 12222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+.. .....||.++.++.++++.+.+.+.
T Consensus 139 ~~~-----~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 139 GLP-----PPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CCC-----CCEEEEeccCccHHHHHHHHHHHhh
Confidence 211 1135688889999999998877653
No 176
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.57 E-value=2.5e-13 Score=111.76 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|||..|+|||||++.+++... +.....|....+ ..+.+ ++ ..+.+|||+|.. .+...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f----~~~y~pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e-----------~~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY----PGSYVPTVFENYTASFEI-DKRRIELNMWDTSGSS-----------YYDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----CCccCCccccceEEEEEE-CCEEEEEEEEeCCCcH-----------HHHHH
Confidence 6899999999999999999987653 112222222111 12233 33 356789999943 23333
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc---CC-hhHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---CP-KPLK 170 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~---~~-~~~~ 170 (352)
...++.++|++++|+|++++-+-... .+...+.... ..+ |++||.||+|+.... ..+...-... .. ..-.
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~--piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNA--KVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCC--CEEEEEECcccccch-hhhhhhhhccCCccCHHHHH
Confidence 34467899999999999844332222 2333333332 223 899999999986431 1111110000 00 1122
Q ss_pred HHHHhcCC-cEEEEcCCCcccccchH-HHHHHHHHHHHH
Q 018636 171 EILQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSV 207 (352)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~ 207 (352)
.+....+. .|+ .+||.++. ++.+++......
T Consensus 142 ~~ak~~~~~~y~------E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 142 VLAKQVGAVSYV------ECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHHcCCCEEE------EcCCCcCCcCHHHHHHHHHHH
Confidence 33334443 343 45777666 499988876554
No 177
>PRK12735 elongation factor Tu; Reviewed
Probab=99.57 E-value=1.5e-13 Score=123.49 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=100.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC------cccc--------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK------AFKA--------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~------~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
+..+|+++|+.++|||||+++|++.. .+.. .....+.|.......+.. ++..++++||||..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~--- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA--- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH---
Confidence 45899999999999999999998621 1000 001223444443333333 56788999999942
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceE-EEEEeCCCCCCcchhcHHHHhc
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
.+...+......+|++++|+|+...........+..+.. .+. |. ++++||+|+.+. ..+.+.+.
T Consensus 87 --------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~--~~~~~~~~ 151 (396)
T PRK12735 87 --------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLELVE 151 (396)
T ss_pred --------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch--HHHHHHHH
Confidence 333334444568899999999986677776666666554 343 54 467999999753 33322222
Q ss_pred ccCChhHHHHHHhcCC---cEEEEcCCCcccccch----------HHHHHHHHHHHHHHH
Q 018636 163 HECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIV 209 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~----------~~~~~L~~~i~~~~~ 209 (352)
. .+..++..++. .+.+ .+.|+.++ .++..|++.+...++
T Consensus 152 ~----ei~~~l~~~~~~~~~~~i----i~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 152 M----EVRELLSKYDFPGDDTPI----IRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred H----HHHHHHHHcCCCcCceeE----EecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 1 15555555432 1211 23444444 356788888877653
No 178
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.56 E-value=1.6e-13 Score=107.76 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||+|.|++.. +..... .+.+.......+.. ++ ..+.+|||||..+.. .+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~~~~----- 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR----AIRRL----- 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEEE-CCEEEEEEEEECCCcccch----HHHHH-----
Confidence 689999999999999999999887 332221 12233333322333 55 667899999954321 11111
Q ss_pred hcccCCccEEEEEEecCCC---CCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....++.+++++|.... +.......+..+...... ..|+++++||+|.... .... . ....+.
T Consensus 70 --~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~~~~-~--------~~~~~~ 134 (161)
T TIGR00231 70 --YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--KLKT-H--------VAFLFA 134 (161)
T ss_pred --HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--hhhH-H--------HHHHHh
Confidence 11244555555555412 112222333333333221 2389999999999765 2111 1 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
..+... ..+.|+..+.++.++++.+.
T Consensus 135 ~~~~~~-----~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEP-----IIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCCc-----eEEeecCCCCCHHHHHHHhh
Confidence 322221 23667888899999988763
No 179
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.56 E-value=5.5e-14 Score=112.11 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=99.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+++|..|||||||++.|......... .|.......+.+ .+..+.++|.+|-.. +...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~-----pT~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETI-----PTIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEE-----EESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccC-----cccccccceeee-CcEEEEEEecccccc-----------cccc
Confidence 45689999999999999999999876542222 234444555555 788899999999322 2223
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~ 173 (352)
...++.++|+++||+|.++.-. -. .....+..++... ...|++|++||.|.... ....+.+.+.- .. +
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~-l~-e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~-l 145 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPER-LQ-EAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EK-L 145 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGG-HH-HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GG-T
T ss_pred ceeeccccceeEEEEeccccee-ec-ccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hh-c
Confidence 4455678999999999882211 11 1112222322221 12499999999998765 11233333221 11 1
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
. ...++.++ .+|+.++.|+.+.++++.+.
T Consensus 146 ~-~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 146 K-NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp T-SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred c-cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 0 12344442 45778899999999988754
No 180
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.55 E-value=2.9e-13 Score=107.55 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++..... ....|.... ...+.+.. ...+.+|||||..... ...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE----SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT-----------AMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCcchheEEEEEEECCEEEEEEEEeCCCcccch-----------hhh
Confidence 589999999999999999998665411 111122111 12222311 2466899999965421 122
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.+++++++|++.+++-+-.. ..+...+..... ....|++++.||.|.........++ ...+....
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~ 136 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQW 136 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccccCccCHHH---------HHHHHHHc
Confidence 223457899999999883322222 223343433322 1123899999999986441011111 11122222
Q ss_pred C-CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 177 ~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
+ ..++ .+||+++.++.++++.+...
T Consensus 137 ~~~~~~------~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 137 GNVPFY------ETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred CCceEE------EeeCCCCCCHHHHHHHHHHH
Confidence 3 1222 46888899999999887653
No 181
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.5e-12 Score=111.49 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=101.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccc-----cCCCCCcceeeEeEEEEee-CC--ceEEEEeCCCCCCCCCCcH--H
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE--F 88 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~--~ 88 (352)
..++.++|.+|.|||||||+|++...... .......|.........+. +| -.++|+|||||+|.-.... .
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 37899999999999999999998744211 1111112333333333321 23 3568999999998543221 1
Q ss_pred -----HHHHHHHHHh---------cccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 89 -----VGKEIVKCLG---------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 89 -----~~~~~~~~~~---------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
+..++..++. .....+|++||.+.+. +.+..-|...++.+.. .+ |+|-|+.|.|.++.
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~----~v--NiIPVI~KaD~lT~- 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK----KV--NLIPVIAKADTLTK- 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc----cc--cccceeeccccCCH-
Confidence 1222333321 1123789999999887 5688888777665543 23 89999999999988
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCC
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
..+..+... +...+..+.-+++.|...
T Consensus 174 -~El~~~K~~-----I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 174 -DELNQFKKR-----IRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred -HHHHHHHHH-----HHHHHHHcCcceecCCCC
Confidence 888877776 777777777777766554
No 182
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.55 E-value=1.4e-13 Score=111.35 Aligned_cols=164 Identities=17% Similarity=0.153 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|++|+|||||++.|+.... .. ....|....+ ..+.. ++ ..+.++||+|...... +
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~--------~--- 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF-PE---EYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER--------L--- 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-Cc---ccCCcccceEEEEEEE-CCEEEEEEEEECCCChhccc--------c---
Confidence 5899999999999999999984433 11 1111221111 12222 33 3467899999643211 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc-ccCC-hhHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG-HECP-KPLKEI 172 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~-~~~~-~~~~~~ 172 (352)
....+..+|++++++++++.-+-.. ..++..+..... . .|+++|.||+|+.... ...+.... .... .....+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHH
Confidence 1113467899999999873322222 235555554433 2 3999999999975421 01100000 0000 011222
Q ss_pred HHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+. .|+ .+||+++.+++++++.+.+.+.
T Consensus 142 ~~~~~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 142 AKEIGAKKYM------ECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred HHHhCCcEEE------EccCCCCCCHHHHHHHHHHHHh
Confidence 233332 232 5688999999999998876553
No 183
>PRK12736 elongation factor Tu; Reviewed
Probab=99.55 E-value=3.3e-13 Score=121.23 Aligned_cols=169 Identities=15% Similarity=0.177 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.++|||||+++|++...-.. .....+.|.......+.. ++..+.++||||..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~-- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHA-- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHH--
Confidence 3458999999999999999999986321000 001223444443333333 56788999999932
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHHh
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~l 161 (352)
++...+......+|++++|+|+...+...+...+.++... +. | +++++||+|+.+. ..+.+.+
T Consensus 87 ---------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~----~~~IvviNK~D~~~~--~~~~~~i 150 (394)
T PRK12736 87 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV----PYLVVFLNKVDLVDD--EELLELV 150 (394)
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CEEEEEEEecCCcch--HHHHHHH
Confidence 2333333334578999999999877777777777776654 43 5 6788999998744 3333333
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccch--------HHHHHHHHHHHHHHH
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV 209 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~--------~~~~~L~~~i~~~~~ 209 (352)
.. .+..++...+...- ..+..+.|+.++ .++..|++.+...++
T Consensus 151 ~~----~i~~~l~~~~~~~~-~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 151 EM----EVRELLSEYDFPGD-DIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HH----HHHHHHHHhCCCcC-CccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 21 25555544432100 011224555554 257788888877764
No 184
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.55 E-value=5.5e-13 Score=99.20 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=103.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|.++|..|+||||+++.+.|... .....|...++....+ ++..+.++|.-| ...+..+.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGG-----------q~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGG-----------QKTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCC-----------cchhHHHH
Confidence 458999999999999999999999875 3344566777777777 889999999999 45566777
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHHH
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
..+|...|++++|+|.+++..-.+. ...++.++... +..+++++.||.|..+. ..+.+...+. +..+..
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e~--~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~------L~~l~k 149 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQEC--KQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALD------LEELAK 149 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHHH--HHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhC------HHHhcc
Confidence 7788899999999998733322221 11222222111 12389999999999855 2233332222 555555
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.++.+.+. +|+.++.++.+=++++.
T Consensus 150 s~~~~l~~------cs~~tge~l~~gidWL~ 174 (185)
T KOG0073|consen 150 SHHWRLVK------CSAVTGEDLLEGIDWLC 174 (185)
T ss_pred ccCceEEE------EeccccccHHHHHHHHH
Confidence 55655553 45556644444444443
No 185
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.55 E-value=1.1e-13 Score=110.46 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
++|+++|..|+|||||++.+.+... . .....|.. .....+.. ++ ..+.+|||||.... ...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 64 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-P---TEYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEF-----------DKL 64 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C---CCCCCceeeeeeEEEEE-CCEEEEEEEEECCCChhh-----------ccc
Confidence 4799999999999999999986543 1 11222221 11112233 33 35678999996432 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc----CChhHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK 170 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~----~~~~~~ 170 (352)
....+.++|++++|+|++++-+-.. ..++..+..... . .|++++.||+|+.... ..+....... ......
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 140 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K--APIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAK 140 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHH
Confidence 2234578999999999984433322 234555544322 2 3899999999986431 1111111000 000122
Q ss_pred HHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.+....+. .++ ++||+++.++.++++.+.
T Consensus 141 ~~a~~~~~~~~~------e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 141 ALAEKIGACEYI------ECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHhCCCeEE------EEeCCCCCCHHHHHHHHH
Confidence 22333232 222 568888999999988653
No 186
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=9.1e-14 Score=106.57 Aligned_cols=159 Identities=23% Similarity=0.240 Sum_probs=100.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE--EeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
..+|+|+|..|+|||||+-...-... .. ....|+...+... .. ++ ..+.||||.| .+++.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F-~e---~~e~TIGaaF~tktv~~-~~~~ikfeIWDTAG-----------QERy~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQF-HE---NIEPTIGAAFLTKTVTV-DDNTIKFEIWDTAG-----------QERYH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcc-cc---ccccccccEEEEEEEEe-CCcEEEEEEEEcCC-----------ccccc
Confidence 47999999999999999876653332 22 1112332222222 22 33 4556999999 44455
Q ss_pred HHHhcccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+|+++++.|+|+|+++.-| ...+.|+..++...++++ .+.|+.||+|+...-....++ .....
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~e---------a~~yA 137 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEE---------AQAYA 137 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHH---------HHHHH
Confidence 666788999999999999993222 223457777777656433 444578999998641112222 22222
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+..+--++ .+||+++.++.+|+..|.+.++.
T Consensus 138 e~~gll~~------ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 138 ESQGLLFF------ETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred HhcCCEEE------EEecccccCHHHHHHHHHHhccC
Confidence 33233333 57899999999999999888765
No 187
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=4.5e-13 Score=104.76 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=109.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
+.+...+|+++|.+|+|||.|+-.+..... .. ....++..+.....+.. ++. .+.+|||.| .+.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f-~~-~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaG-----------Qer 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSF-NT-SFISTIGIDFKIKTIEL-DGKKIKLQIWDTAG-----------QER 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccC-cC-CccceEEEEEEEEEEEe-CCeEEEEEEEEccc-----------chh
Confidence 345568999999999999999999885543 21 11122233444445555 444 457899999 455
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
+......+|.+++++++|+|+++..+ .....|++.+.+.-...+ +.+||.||+|+... ..+.. +.-..
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~--R~V~~-------e~ge~ 142 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK--RQVSK-------ERGEA 142 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc--ccccH-------HHHHH
Confidence 66666777889999999999984444 344558888888766555 89999999998864 11110 11233
Q ss_pred HHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+....+-.++ .+||+++.++.+.+-.+.+.+
T Consensus 143 lA~e~G~~F~------EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 143 LAREYGIKFF------ETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred HHHHhCCeEE------EccccCCCCHHHHHHHHHHHH
Confidence 4444444444 578888999998877665544
No 188
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.54 E-value=1.5e-13 Score=108.93 Aligned_cols=158 Identities=17% Similarity=0.207 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+|+|.+|+|||||++.+++... . .....+. ........+ ++. .+.+|||||...... ....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~------~~~~--- 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-I---GEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT------EQLE--- 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-c---cccCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc------chHH---
Confidence 589999999999999999876433 1 1111111 111122223 333 467999999764110 0111
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+..+|++++|+|+++.-+-.. ..++..+..........|+++|.||+|+... ..+... ....+....
T Consensus 67 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~-------~~~~~~~~~ 136 (165)
T cd04146 67 -RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTE-------EGEKLASEL 136 (165)
T ss_pred -HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHH-------HHHHHHHHc
Confidence 12347899999999984333222 2234444443210112389999999997533 111100 012223333
Q ss_pred CCcEEEEcCCCcccccch-HHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGT-EQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~-~~~~~L~~~i~~~~ 208 (352)
+..|+ ..|+.++ .++.+++..+.+.+
T Consensus 137 ~~~~~------e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 137 GCLFF------EVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCEEE------EeCCCCCchhHHHHHHHHHHHH
Confidence 33333 4566677 58999998876643
No 189
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.53 E-value=2e-13 Score=127.05 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-----------------CCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~lvDtpG~~~~ 82 (352)
..|+++|+.++|||||+|.|.+..... ...+++|.......+... ....+++|||||...
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~--~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~- 81 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAK--REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA- 81 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccc--ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence 589999999999999999999875421 122333332222222110 012478999999533
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
+.......+..+|++++|+|+++.++......+..+... +. |+++++||+|+..
T Consensus 82 ----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~v----piIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 ----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-KT----PFVVAANKIDRIP 135 (590)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-CC----CEEEEEECCCccc
Confidence 222222344689999999999876777776666665442 32 8999999999863
No 190
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.53 E-value=2.3e-13 Score=115.37 Aligned_cols=115 Identities=21% Similarity=0.268 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHhh---CCCcccc-------------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 21 TVVLLGRTGNGKSATGNSIL---GRKAFKA-------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~---g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
+|+++|+.|+|||||+++|+ |...... .....++|.......+.+ .+..+++|||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence 48999999999999999996 3211000 011223455555566666 7889999999996542
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
... ...++..+|++++|+|+...+...+...+..+... +. |+++++||+|....
T Consensus 78 -----~~~----~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNK~D~~~a 131 (270)
T cd01886 78 -----TIE----VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-NV----PRIAFVNKMDRTGA 131 (270)
T ss_pred -----HHH----HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 222 22344577999999999877777777777666542 43 89999999998754
No 191
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.53 E-value=5.4e-13 Score=108.29 Aligned_cols=151 Identities=15% Similarity=0.062 Sum_probs=92.0
Q ss_pred EcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE--EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhccc
Q 018636 25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (352)
Q Consensus 25 vG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
||..|||||||++.++.... ......|....+. .+.+. ....+.||||+|... +......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f----~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC----CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 69999999999999985443 1122223332222 22221 135678999999432 333333456
Q ss_pred CCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 102 DGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
.+++++++|+|++++.+-... .++..+..... .+ |++||.||+|+... ....+.+ .+....+..|
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~--piilvgNK~Dl~~~--~v~~~~~---------~~~~~~~~~~ 131 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NI--PIVLCGNKVDVKDR--KVKAKSI---------TFHRKKNLQY 131 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CC--CEEEEEECcccccc--cCCHHHH---------HHHHHcCCEE
Confidence 789999999999854443322 35555555432 23 99999999998543 2111111 1222223333
Q ss_pred EEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+ .+||+++.++.+++.++...+..
T Consensus 132 ~------e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 132 Y------DISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred E------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 2 56888899999999999876643
No 192
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=9.8e-14 Score=121.18 Aligned_cols=178 Identities=14% Similarity=0.071 Sum_probs=106.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..++.|+|+|++|+|||||+|+|+..+..- .++.+.|+...+......+|.+++++||.|+-... ...+...-...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsI--VSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~--~~~iE~~gI~r 341 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSI--VSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES--NDGIEALGIER 341 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceE--eCCCCCcchhhheeEeecCCeEEEEEecccccccc--CChhHHHhHHH
Confidence 345899999999999999999999988733 34444455443333333489999999999998722 11111212222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH---hhccc----ccceEEEEEeCCCCCCc-chhcHHHHhcccCChh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN---LFGKN----VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKP 168 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~---~~~~~----~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~ 168 (352)
.......+|++++|+|+....+..+....+.+.. .+... ...+++++.||.|+... +..... ... +
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~--~~~----~ 415 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI--PVV----Y 415 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC--cee----c
Confidence 2334468899999999954444444443333322 22111 12488999999998765 100000 000 0
Q ss_pred HHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
... ..+.. |......++.++.++..|.+.+...+..
T Consensus 416 ~~~---~~~~~---~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 416 PSA---EGRSV---FPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ccc---ccCcc---cceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 110 00111 1222346778899999999988877654
No 193
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.52 E-value=3.1e-13 Score=102.59 Aligned_cols=165 Identities=16% Similarity=0.125 Sum_probs=101.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
-++|.++|.+|+|||||+|.+....... ....++........+.+ +++ .+.||||.| .+.+.+.
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~--qykaTIgadFltKev~V-d~~~vtlQiWDTAG-----------QERFqsL 74 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQ--QYKATIGADFLTKEVQV-DDRSVTLQIWDTAG-----------QERFQSL 74 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHH--HhccccchhheeeEEEE-cCeEEEEEEEeccc-----------HHHhhhc
Confidence 3799999999999999999998765411 11112222222333334 444 446899999 5666666
Q ss_pred HhcccCCccEEEEEEecCCC--CCHHHHHHHHHHHHhhccc-ccceEEEEEeCCCCCCcc-hhcHHHHhcccCChhHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNR--FSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~--~~~~~~~~l~~~~~~~~~~-~~~~~ilv~nk~D~~~~~-~~~l~~~l~~~~~~~~~~~ 172 (352)
-...|+++|++++|++++.. +...+..+-+++...-..+ -.-|+||+.||+|..... +..-. . ..++.
T Consensus 75 g~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~---~-----~Aq~W 146 (210)
T KOG0394|consen 75 GVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSE---K-----KAQTW 146 (210)
T ss_pred ccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeH---H-----HHHHH
Confidence 66778999999999998833 3333334444444433222 334999999999997531 01111 1 13334
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+..-++-.++ .+||+...++.+.++.+....-.
T Consensus 147 C~s~gnipyf-----EtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 147 CKSKGNIPYF-----ETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HHhcCCceeE-----EecccccccHHHHHHHHHHHHHh
Confidence 4443333332 46778888999988877665433
No 194
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.52 E-value=9e-14 Score=127.14 Aligned_cols=166 Identities=11% Similarity=0.074 Sum_probs=98.9
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cCC-----------------CCCcceeeEe
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG-----------------SSGVTKTCEM 60 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~-----------------~~~~t~~~~~ 60 (352)
..+......+|+++|+.++|||||++.|+....... +.. ..++|.....
T Consensus 20 ~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~ 99 (474)
T PRK05124 20 HAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAY 99 (474)
T ss_pred hhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeE
Confidence 333345668999999999999999999874432100 000 1223445544
Q ss_pred EEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceE
Q 018636 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 61 ~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
..+.+ ++..+.++||||..+ ....+ ......+|++++|+|+...+...+...+..+.. ++. .++
T Consensus 100 ~~~~~-~~~~i~~iDTPGh~~-------f~~~~----~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~i 163 (474)
T PRK05124 100 RYFST-EKRKFIIADTPGHEQ-------YTRNM----ATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHL 163 (474)
T ss_pred EEecc-CCcEEEEEECCCcHH-------HHHHH----HHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---Cce
Confidence 44444 677899999999422 12222 223368899999999986665555544444433 342 278
Q ss_pred EEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHH
Q 018636 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (352)
Q Consensus 141 ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L 200 (352)
++++||+|....+...+++.... +..++..++. .......+.|+.++.++..+
T Consensus 164 IvvvNKiD~~~~~~~~~~~i~~~-----l~~~~~~~~~--~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 164 VVAVNKMDLVDYSEEVFERIRED-----YLTFAEQLPG--NLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred EEEEEeeccccchhHHHHHHHHH-----HHHHHHhcCC--CCCceEEEEEeecCCCcccc
Confidence 99999999874322344444443 4444443331 01122346677777777654
No 195
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.52 E-value=1.8e-12 Score=105.10 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee--EeEEEEee------CCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLK------DGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~------~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
.+|+++|.+|+|||||++.+++.... .....|..+ ....+.+. ....+.+|||+|...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~----~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~---------- 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVL----GRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES---------- 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC----CCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------
Confidence 37999999999999999999977541 112223322 22222321 123578999999432
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhc-----------------ccccceEEEEEeCCCCCCcc
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG-----------------KNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~-----------------~~~~~~~ilv~nk~D~~~~~ 153 (352)
+.......+.++|++++|+|++++-+-... .|+..+....+ .....|++||.||+|+...-
T Consensus 67 -~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 67 -VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred -HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 233334456799999999999855443333 35555543210 01123999999999986430
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCC
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
...-+..+.. .+.+...++......+..
T Consensus 146 ~~~~~~~~~~-----~~~ia~~~~~~~i~~~c~ 173 (202)
T cd04102 146 ESSGNLVLTA-----RGFVAEQGNAEEINLNCT 173 (202)
T ss_pred ccchHHHhhH-----hhhHHHhcCCceEEEecC
Confidence 0111222222 344556677766665544
No 196
>PLN03127 Elongation factor Tu; Provisional
Probab=99.52 E-value=3.4e-13 Score=122.23 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=80.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC------Ccccc--------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR------KAFKA--------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~------~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.++|||||++.|++. ..... .....+.|.......+.. ++..++++||||..+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc-
Confidence 34589999999999999999999743 11000 001133455554444444 567899999999743
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~ 152 (352)
....+.. ....+|++++|+|+...+...++..+.++... +. | +++++||+|+.+.
T Consensus 137 ------f~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi----p~iIvviNKiDlv~~ 192 (447)
T PLN03127 137 ------YVKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV----PSLVVFLNKVDVVDD 192 (447)
T ss_pred ------hHHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEEEeeccCCH
Confidence 1222222 22368999999999877777777777776653 43 5 5788999999854
No 197
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.52 E-value=2.4e-13 Score=122.62 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=98.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEEE--------------e-----------eCCceE
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTV--------------L-----------KDGQVV 71 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~--------------~-----------~~~~~~ 71 (352)
...+|+++|..++|||||++.|++....... ....+.|....+..+. . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3479999999999999999999875321000 0011122222111100 0 014678
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 72 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
+++||||. +.+...+......+|++++|+|+++.. .......+..+.. ++- .++++++||+|+.
T Consensus 83 ~liDtPGh-----------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGH-----------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCH-----------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEccccC
Confidence 99999993 223333333345789999999998554 4555555555433 332 2789999999998
Q ss_pred CcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 151 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.. +...+.... +..++...... .....+.|+.++.++.+|++.+...++
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~~~~---~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGTVAE---NAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhcccC---CCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 65 333322222 33333221000 011246788899999999999988654
No 198
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.52 E-value=4.6e-13 Score=112.13 Aligned_cols=168 Identities=19% Similarity=0.202 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
-|++||-+++||||||+.++.... ....+..|+-. ....+....+..+++.|.||+........-+..++.+.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE- 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE- 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH-
Confidence 478999999999999999997653 23445555433 3333333357779999999998866555556666666665
Q ss_pred ccCCccEEEEEEecCCCCC----HHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 100 AKDGIHAFLVVFSVTNRFS----QEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~----~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.+.++++|+|++ +.. ..+.. ....+...-..-..+|.+||+||+|.... .+.++.+... +..
T Consensus 237 ---Rt~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~--------l~~ 303 (369)
T COG0536 237 ---RTRVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKA--------LAE 303 (369)
T ss_pred ---hhheeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHH--------HHH
Confidence 567899999988 332 23333 33333332222234599999999995533 1444433332 223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.++...+.+ .|+.++.++++|+..+.+++..
T Consensus 304 ~~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 304 ALGWEVFYL-----ISALTREGLDELLRALAELLEE 334 (369)
T ss_pred hcCCCccee-----eehhcccCHHHHHHHHHHHHHH
Confidence 333332221 5788889999999998888765
No 199
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.9e-13 Score=97.18 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|++||..|+|||.|++..+.... +.+. ..++.+..-+..+.+ ++. .+.+|||.| .+.+....
T Consensus 8 fkivlvgnagvgktclvrrftqglf-ppgq-gatigvdfmiktvev-~gekiklqiwdtag-----------qerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLF-PPGQ-GATIGVDFMIKTVEV-NGEKIKLQIWDTAG-----------QERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCC-CCCC-CceeeeeEEEEEEEE-CCeEEEEEEeeccc-----------hHHHHHHH
Confidence 5899999999999999999986654 2211 112334445555665 443 568999999 66777777
Q ss_pred hcccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
.++|..+|++++|.|++...+ .-.-.||..+.......+ --|+|.||.|+.+. ..+.+.+.+ -....
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qige--------efs~~ 141 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIGE--------EFSEA 141 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHHH--------HHHHh
Confidence 788899999999999983333 333467777777655433 45677899998865 444433322 22222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+..|+. .+||+...++..|+..+.-
T Consensus 142 qdmyfl-----etsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 142 QDMYFL-----ETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hhhhhh-----hhcccchhhHHHHHHHHHH
Confidence 444554 5577777888888776543
No 200
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.52 E-value=5.1e-13 Score=98.85 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|||.+|+|||||+-....... .. ..+.++.++..+....+ +| ..+.||||.| .+.++..
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~f-d~-~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAG-----------qErFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTF-DD-LHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAG-----------QERFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhccc-Cc-cCCceeeeeEEEEEEEE-cCceEEEEEEeccc-----------hHhhhcc
Confidence 47999999999999999988875443 22 12222344555555555 44 4678999999 5667777
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..++|+++.++++|+|++.+-+-... .|+..+...+-. ..--.++|.||+|.... ..+ .+ .-.--+..
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~--R~V----~r----eEG~kfAr 145 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESE--RVV----DR----EEGLKFAR 145 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhc--ccc----cH----HHHHHHHH
Confidence 77888999999999999844332222 244444433222 11123466899997643 111 11 00001111
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.++..++ ..||++..++...++.+..-
T Consensus 146 -~h~~LFi----E~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 146 -KHRCLFI----ECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred -hhCcEEE----EcchhhhccHHHHHHHHHHH
Confidence 2223322 45778888888777655443
No 201
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.52 E-value=4e-13 Score=105.32 Aligned_cols=152 Identities=18% Similarity=0.115 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+++|.+|+|||||++.+++... ..... .+.......+.+ ++ ..+.++||+|....
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f-~~~~~---~~~~~~~~~i~~-~~~~~~l~i~D~~g~~~~--------------- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSY-VQLES---PEGGRFKKEVLV-DGQSHLLLIRDEGGAPDA--------------- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCC-CCCCC---CCccceEEEEEE-CCEEEEEEEEECCCCCch---------------
Confidence 3799999999999999987765432 11111 111111122333 44 34778999996420
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..+..+|++++|+|.+++-+-.. ..++..+..... ....|+++|.||.|+.......+.... ...+....
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~~-------~~~~~~~~ 131 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDAR-------ARQLCADM 131 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHHH-------HHHHHHHh
Confidence 12246899999999995544444 345555554322 112389999999987431001111110 11222222
Q ss_pred C-CcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
+ ..|+ .+||+++.++.+++..+.+
T Consensus 132 ~~~~~~------e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 132 KRCSYY------ETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCcEE------EEecCCCCCHHHHHHHHHh
Confidence 2 2232 5688999999999987653
No 202
>PRK00049 elongation factor Tu; Reviewed
Probab=99.52 E-value=6.4e-13 Score=119.36 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=80.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.++|||||++.|++...-.. .....+.|.......+.. ++..+.++||||..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH--
Confidence 3458999999999999999999987321000 000223444444333333 56788999999942
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEE-EEEeCCCCCCc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI-VVFTGGDDLED 152 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i-lv~nk~D~~~~ 152 (352)
.+...+......+|++++|+|+...+...+...+.++... +. |.+ +++||+|....
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVDD 143 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcch
Confidence 3333344445689999999999877777777777776653 43 655 67999999753
No 203
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.51 E-value=2.4e-13 Score=112.83 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=66.6
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
+........+|+|||.+++|||||||.|+|... .......|+-..+.....++|-.+.++|+||+.........-+.
T Consensus 56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~ 132 (365)
T COG1163 56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGR 132 (365)
T ss_pred ceEeccCCeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcc
Confidence 334444558999999999999999999998763 24455566655565555558999999999999765433322122
Q ss_pred HHHHHHhcccCCccEEEEEEecC
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
++ ......+|++++|+|+.
T Consensus 133 ~v----lsv~R~ADlIiiVld~~ 151 (365)
T COG1163 133 QV----LSVARNADLIIIVLDVF 151 (365)
T ss_pred ee----eeeeccCCEEEEEEecC
Confidence 22 22335778888888764
No 204
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.51 E-value=3.3e-13 Score=112.48 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccc--c-CC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKA--S-AG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~--~-~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
+|+++|+.|+|||||+++|+....... + .. ....+.......+.+ ++..+++|||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 489999999999999999975321000 0 00 111222333444455 6889999999998652
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..... .++..+|++++|+++...........+..+.. .+. |+++++||+|....
T Consensus 78 -----~~~~~----~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~~~----P~iivvNK~D~~~a 131 (237)
T cd04168 78 -----IAEVE----RSLSVLDGAILVISAVEGVQAQTRILWRLLRK-LNI----PTIIFVNKIDRAGA 131 (237)
T ss_pred -----HHHHH----HHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECccccCC
Confidence 12222 23357799999999987777666666666554 243 89999999998754
No 205
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.51 E-value=4.9e-13 Score=120.47 Aligned_cols=168 Identities=13% Similarity=0.158 Sum_probs=98.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCccc-ccCCCCCcceeeEeEEEEe--------------e---C--------Cce
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVL--------------K---D--------GQV 70 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~--------------~---~--------~~~ 70 (352)
....+|+++|+.|+|||||+.+|++..... ......+.|....+....+ . + ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 345899999999999999999998742100 0001112333322211110 0 0 257
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCC
Q 018636 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (352)
Q Consensus 71 ~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~ 149 (352)
++++||||. ..+...+......+|++++|+|++... .......+..+.. .+. .++++|+||+|+
T Consensus 87 i~liDtPG~-----------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl 151 (411)
T PRK04000 87 VSFVDAPGH-----------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL 151 (411)
T ss_pred EEEEECCCH-----------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence 899999993 223333333335679999999998554 4555555555543 332 268999999999
Q ss_pred CCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+. ......... +..++...... .....+.|+.++.++.+|++.+...++
T Consensus 152 ~~~--~~~~~~~~~-----i~~~l~~~~~~---~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 152 VSK--ERALENYEQ-----IKEFVKGTVAE---NAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred ccc--hhHHHHHHH-----HHHHhccccCC---CCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 765 333322222 33333211000 012246788899999999999988654
No 206
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.51 E-value=2.2e-13 Score=122.76 Aligned_cols=156 Identities=13% Similarity=0.094 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCccc--------------ccC-----------------CCCCcceeeEeEEEEeeCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA-----------------GSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~-----------------~~~~~t~~~~~~~~~~~~~ 68 (352)
.+|+++|+.++|||||++.|+...... .+. ...+.|.+.....+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 479999999999999999986332100 000 0122344444445555 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..+.++||||..+ +...+......+|++++|+|+...+.......+..+..+ +. .++++++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence 7899999999432 222233344588999999999877766666655555443 42 26889999999
Q ss_pred CCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHH
Q 018636 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
....+...+++.... +..++...+... ....+.|+.++.++.+
T Consensus 145 ~~~~~~~~~~~i~~~-----~~~~~~~~~~~~---~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 145 LVDYDEEVFENIKKD-----YLAFAEQLGFRD---VTFIPLSALKGDNVVS 187 (406)
T ss_pred cccchHHHHHHHHHH-----HHHHHHHcCCCC---ccEEEeecccCCCCcc
Confidence 875422334443433 444544433210 0123567777777664
No 207
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.50 E-value=7.6e-13 Score=119.11 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=78.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC------Cccccc--------CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR------KAFKAS--------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~------~~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.++|||||++.|++. ..+... ....+.|.......+.. ++..+++|||||..+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH-
Confidence 45689999999999999999999843 110000 00133444443333333 567899999999532
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+...+......+|++++|+|+...........+..+... +.. ++++++||+|+.+.
T Consensus 88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi~---~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD 143 (394)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEecccCCH
Confidence 222223333578999999999866777777777776543 431 45578999998754
No 208
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.50 E-value=2.7e-13 Score=112.25 Aligned_cols=156 Identities=16% Similarity=0.139 Sum_probs=88.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcc--c---------------------------ccCCCCCcceeeEeEEEEeeCCceE
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAF--K---------------------------ASAGSSGVTKTCEMKTTVLKDGQVV 71 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~--~---------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (352)
+|+++|+.|+|||||+..|+..... . ......+.|.......+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 4899999999999999998522100 0 0001122344444455555 78899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceEEEEE
Q 018636 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (352)
Q Consensus 72 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ilv~ 144 (352)
.++||||..+ +..........+|++++|+|++.. ........+..+. .++. .|+++++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999532 112222234578999999999842 2223333333333 2332 2899999
Q ss_pred eCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHH
Q 018636 145 TGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198 (352)
Q Consensus 145 nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~ 198 (352)
||+|+... +...+++.+.. +..++...+.... -....++||.++.++.
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~~~~~-~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVGYNPK-DVPFIPISGLTGDNLI 194 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHcCCCcC-CceEEEeecCcCCCCC
Confidence 99999742 12344555544 5545544332100 0012356777777765
No 209
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.1e-12 Score=99.20 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=106.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
..+|+++|..++||||||+...-... ......|. +.....+.+ .++ .+.+|||.| .+.+.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f----d~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAG-----------QERFr 85 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF----DNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAG-----------QERFR 85 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh----cccccceeeeEEEEEEEEE-cCcEEEEEEEeccc-----------HHHHh
Confidence 37999999999999999999874433 22222333 333333333 343 567999999 78888
Q ss_pred HHHhcccCCccEEEEEEecCCCCCH-HHHHHHHHHHHhhccc-ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~-~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
..+..+++++.++++|+|++++-|- ....|++-+..-.|.+ + .++||.||.|+.+. ......- -...
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~v--iI~LVGnKtDL~dk--rqvs~eE-------g~~k 154 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDV--IIFLVGNKTDLSDK--RQVSIEE-------GERK 154 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCce--EEEEEcccccccch--hhhhHHH-------HHHH
Confidence 8888889999999999999966553 3356777777666653 3 56677899999876 2222100 0112
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+.-|. .+||+.+.++.+|+..|...++.
T Consensus 155 Akel~a~f~------etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 155 AKELNAEFI------ETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HHHhCcEEE------EecccCCCCHHHHHHHHHHhccC
Confidence 222233222 46888899999999998887754
No 210
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.49 E-value=2.5e-13 Score=129.32 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=96.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------cCC-----------------CCCcceeeEeEEE
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG-----------------SSGVTKTCEMKTT 63 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~-----------------~~~~t~~~~~~~~ 63 (352)
+.....+|+++|+.++|||||++.|+.....-. +.+ ..+.|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 334558999999999999999999986432100 000 0123333444444
Q ss_pred EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 64 ~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
.+ ++..++++||||..+ +...+......+|++++|+|+...+.......+.++..+ +. .+++++
T Consensus 100 ~~-~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 44 677889999999422 222222234588999999999866665555555554443 42 278899
Q ss_pred EeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHH
Q 018636 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
+||+|....+...+++.... +..++...+... ....+.|+.++.++.+
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~~~---~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGLHD---VTFIPISALKGDNVVT 211 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcCCCC---ccEEEEecccCCCccc
Confidence 99999875322444444444 444444433210 1123567777777663
No 211
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.49 E-value=6.5e-13 Score=120.94 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=94.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcc-c-------------cc---------------CCCCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAF-K-------------AS---------------AGSSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~-~-------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (352)
....+|+++|+.++|||||++.|+..... . .+ ....+.|.......+.+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 34589999999999999999999742110 0 00 01123455555555555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC---CCHHHHHHHHHHHHhhcccccceEEEEE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~ilv~ 144 (352)
+..+.+|||||.. .+...+...+..+|++++|+|+++. ........+.++ ..++. .++++++
T Consensus 84 ~~~i~iiDtpGh~-----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVvi 148 (426)
T TIGR00483 84 KYEVTIVDCPGHR-----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAI 148 (426)
T ss_pred CeEEEEEECCCHH-----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEE
Confidence 7789999999932 2333333345689999999999854 222223333333 23342 2789999
Q ss_pred eCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHH
Q 018636 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
||+|+...+...++..... +..++...+.... .....++|+.++.++.+
T Consensus 149 NK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~-~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPD-TVPFIPISAWNGDNVIK 197 (426)
T ss_pred EChhccCccHHHHHHHHHH-----HHHHHHHcCCCcc-cceEEEeeccccccccc
Confidence 9999974322334443443 5555554432100 00123567777887765
No 212
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=8.9e-13 Score=117.16 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+.|.++|+--.|||||+..|-+... ..-..|++|.....+.+.+. +...++++|||| .+.|...-
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG-----------HeAFt~mR 72 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG-----------HEAFTAMR 72 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCc-----------HHHHHHHH
Confidence 6899999999999999999988776 33456778888888888775 358999999999 44444444
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.....-.|.+++|+++++.+.......+..++.. +- |+++.+||+|..+.+...+...+.. ..=..+.++
T Consensus 73 aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~v----P~iVAiNKiDk~~~np~~v~~el~~-----~gl~~E~~g 142 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-GV----PIVVAINKIDKPEANPDKVKQELQE-----YGLVPEEWG 142 (509)
T ss_pred hcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-CC----CEEEEEecccCCCCCHHHHHHHHHH-----cCCCHhhcC
Confidence 4445567999999999999999999988888874 43 9999999999986632333333333 221233444
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+... ..+.||+++.|+.+|++.+.-..
T Consensus 143 g~v~----~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 143 GDVI----FVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CceE----EEEeeccCCCCHHHHHHHHHHHH
Confidence 4432 24789999999999999876543
No 213
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.3e-12 Score=115.46 Aligned_cols=162 Identities=15% Similarity=0.180 Sum_probs=122.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
...|-|+|+...||||||..|-+... .....|++|.....+.+..+.|..++++|||| ...|...-.
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPG-----------HaAF~aMRa 219 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPG-----------HAAFSAMRA 219 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCc-----------HHHHHHHHh
Confidence 36899999999999999999988776 33456888999988888888899999999999 333433334
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
......|.+++|+.+++.........+..++.. .+ |+++.+||+|..+.+.+.....|.. ..-.++..|+
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a~pekv~~eL~~-----~gi~~E~~GG 289 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGANPEKVKRELLS-----QGIVVEDLGG 289 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCCCHHHHHHHHHH-----cCccHHHcCC
Confidence 444567999999999988888888888877764 22 9999999999886633333333332 2334566677
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..-. .+.||.++.+++.|.+.+.-.
T Consensus 290 dVQv----ipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 290 DVQV----IPISALTGENLDLLEEAILLL 314 (683)
T ss_pred ceeE----EEeecccCCChHHHHHHHHHH
Confidence 6654 477899999999998876543
No 214
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.48 E-value=1.3e-12 Score=110.67 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcc--cccCC-----CC-------------CcceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAF--KASAG-----SS-------------GVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~--~~~~~-----~~-------------~~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
++|+|+|+.|+|||||+++|+..... ..+.. .+ +.+.......+.+ .+..+.+|||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 68999999999999999999743210 00000 01 1222233334555 7889999999996
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+. .... ..++..+|++++|+|++..+.......+..+.. .+. |+++++||+|....
T Consensus 82 ~df-------~~~~----~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~~----P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDF-------SEDT----YRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RGI----PIITFINKLDREGR 138 (267)
T ss_pred hHH-------HHHH----HHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-cCC----CEEEEEECCccCCC
Confidence 542 1112 223357899999999986666555555544433 232 89999999998654
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.48 E-value=1.2e-12 Score=122.38 Aligned_cols=166 Identities=16% Similarity=0.246 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC-ccccc-------------CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK-AFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~ 85 (352)
++|+|+|+.++|||||++.|+... .+... ....++|.......+.+ .+..+++|||||..+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence 479999999999999999997421 11110 01123555555566666 7889999999996542
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
...+ ..++..+|++++|+|+...........+..+... +- |.++++||+|.... ...+.+..
T Consensus 78 ----~~ev----~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~i----p~IVviNKiD~~~a---~~~~v~~e-- 139 (594)
T TIGR01394 78 ----GGEV----ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-GL----KPIVVINKIDRPSA---RPDEVVDE-- 139 (594)
T ss_pred ----HHHH----HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-CC----CEEEEEECCCCCCc---CHHHHHHH--
Confidence 2222 2333578999999999866666667777766552 32 88999999998643 12222222
Q ss_pred ChhHHHHHHhcCCcE-EEEcCCCcccccchH----------HHHHHHHHHHHHHHh
Q 018636 166 PKPLKEILQLCDNRC-VLFDNKTKDEAKGTE----------QVRQLLSLVNSVIVQ 210 (352)
Q Consensus 166 ~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~----------~~~~L~~~i~~~~~~ 210 (352)
+..++..++..- ....+....|+.++. ++..|++.|.+.++.
T Consensus 140 ---i~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 140 ---VFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ---HHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 333332211100 000012344555553 788999988887764
No 216
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.48 E-value=3.1e-13 Score=107.39 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=71.7
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeE---------------------------------------
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMK--------------------------------------- 61 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~--------------------------------------- 61 (352)
|+|+|..++|||||||+|+|...++++..+.+... .....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 79999999999999999999886554433222111 00000
Q ss_pred -------------EEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHH
Q 018636 62 -------------TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128 (352)
Q Consensus 62 -------------~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~ 128 (352)
.........+.||||||+.+.......+ +..+...+|+++||.++...++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~-------~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEI-------TEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHH-------HHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHH-------HHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0001113357899999998744333222 22222688999999999966776766666655
Q ss_pred HHhhcccccceEEEEEeCC
Q 018636 129 PNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 129 ~~~~~~~~~~~~ilv~nk~ 147 (352)
...... .+++|+||+
T Consensus 154 ~~~~~~----~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDKS----RTIFVLNKA 168 (168)
T ss_dssp HTTTCS----SEEEEEE-G
T ss_pred hcCCCC----eEEEEEcCC
Confidence 554343 688999984
No 217
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.48 E-value=2.1e-12 Score=102.50 Aligned_cols=152 Identities=20% Similarity=0.268 Sum_probs=97.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-----CCcceeeEeEEEEee-C--CceEEEEeCCCCCCCCCCcHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVG 90 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~--~~~~~lvDtpG~~~~~~~~~~~~ 90 (352)
..+|.+||.+|.|||||+|.|+......++... .+.|+........+. + .-+++++|||||+|.-. ++.++
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn-N~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN-NDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC-ccchh
Confidence 368999999999999999999865543321111 122333332222221 2 23678999999998543 22333
Q ss_pred HHHHHHHh------------------cccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 91 KEIVKCLG------------------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 91 ~~~~~~~~------------------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
+-+.+++. .....+|+++|.++++ +.+...+...|+.+.+. + +++-|+-|.|.++
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v----v--NvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV----V--NVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh----h--eeeeeEeeccccc
Confidence 33333321 1123579999999887 77888888877776654 2 7999999999986
Q ss_pred cchhcHHHHhcccCChhHHHHHHhcCCcEEEEc
Q 018636 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFD 184 (352)
Q Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (352)
- +...+|.+. ++.-+...+-..+..+
T Consensus 199 l--eEr~~Fkqr-----I~~el~~~~i~vYPq~ 224 (336)
T KOG1547|consen 199 L--EERSAFKQR-----IRKELEKHGIDVYPQD 224 (336)
T ss_pred H--HHHHHHHHH-----HHHHHHhcCccccccc
Confidence 6 666666666 6656666555555433
No 218
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.6e-12 Score=97.79 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=100.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+++++|.+|+|||.|+...+.+.. .+ ....+..+......+.+ +++ .+.||||.| .+.+...
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF-~~-~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaG-----------qe~frsv 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRF-QP-VHDLTIGVEFGARMVTI-DGKQIKLQIWDTAG-----------QESFRSV 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCc-cc-cccceeeeeeceeEEEE-cCceEEEEEEecCC-----------cHHHHHH
Confidence 36899999999999999999987764 22 11122233333444455 444 568999999 5566777
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+|.++.+.|+|+|++.+-+-. .-.+|.-++.....+. -++|+.||+|+... ..+.+ .-.+.+..
T Consensus 72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~r--R~Vs~--------EEGeaFA~ 139 (216)
T KOG0098|consen 72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEAR--REVSK--------EEGEAFAR 139 (216)
T ss_pred HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhcc--ccccH--------HHHHHHHH
Confidence 777889999999999998443322 2345666666543322 45566799999865 22211 12223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.++-.+. .+||+++.++.+.+-.+..
T Consensus 140 ehgLifm-----ETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 140 EHGLIFM-----ETSAKTAENVEEAFINTAK 165 (216)
T ss_pred HcCceee-----hhhhhhhhhHHHHHHHHHH
Confidence 2444443 6788888888887765443
No 219
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.48 E-value=3.7e-12 Score=105.39 Aligned_cols=157 Identities=15% Similarity=0.065 Sum_probs=90.0
Q ss_pred CceEEEEEcCCCCCHHHHHH-HhhCCCcccccCCCCCcceeeEeEEEE--ee-CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGN-SILGRKAFKASAGSSGVTKTCEMKTTV--LK-DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin-~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
...+|+|+|++|||||||++ .+.|... .....|....+.... .. ....+.++||+|....
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~----------- 71 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFE-----KKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF----------- 71 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCC-----CCCCCccceEEEEEEEEECCeEEEEEEEECCCchhh-----------
Confidence 44899999999999999996 5555432 111222222222221 11 2346789999994321
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.......+...+++++|+|++++.+-... .++..+..... . .|++++.||+|.... ....+ ...+
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~~~--~~~~~---------~~~~ 137 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVKDR--QVKAR---------QITF 137 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCccc--cCCHH---------HHHH
Confidence 11112234577999999999844443322 33344443322 2 288899999998643 21111 1112
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+..++ ..|+.++.++++++..+.+.+..
T Consensus 138 ~~~~~~~~~------e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 138 HRKKNLQYY------DISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred HHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhh
Confidence 223233333 45777888999988888776654
No 220
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.1e-12 Score=100.65 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+++|.+|+|||-|+...+.... .. .+..++.+........+ +++ ...||||.| .+++...
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF-~~-~SksTIGvef~t~t~~v-d~k~vkaqIWDTAG-----------QERyrAi 79 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEF-SL-ESKSTIGVEFATRTVNV-DGKTVKAQIWDTAG-----------QERYRAI 79 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhccccc-Cc-ccccceeEEEEeeceee-cCcEEEEeeecccc-----------hhhhccc
Confidence 36899999999999999999885543 11 22222222333333334 444 347999999 5566656
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
...+|.++.+.++|+|++.+.+-. -.+||..|+......+ .+++|.||+|+..
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~ 133 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNH 133 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhh
Confidence 667889999999999998555433 3456666666655444 7888899999875
No 221
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.47 E-value=1.7e-12 Score=121.37 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-----CC------------ceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----DG------------QVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----~~------------~~~~lvDtpG~~~~ 82 (352)
..|+++|+.|+|||||+|.|.|..... ...+..|........... .+ ..+++|||||..+.
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~--~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccc--CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 689999999999999999998875421 222333322222111110 00 12689999995432
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
.......+..+|++++|+|+++.+.......+..+.. .+. |+++++||+|..
T Consensus 85 -----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-~~v----piIvviNK~D~~ 136 (586)
T PRK04004 85 -----------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-RKT----PFVVAANKIDRI 136 (586)
T ss_pred -----------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-cCC----CEEEEEECcCCc
Confidence 2222223457899999999986677777776666544 232 899999999985
No 222
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.46 E-value=1.8e-12 Score=121.54 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc------ccccCC-------CCCcceeeEeEEEEee--C--CceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA------FKASAG-------SSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~------~~~~~~-------~~~~t~~~~~~~~~~~--~--~~~~~lvDtpG~~~~ 82 (352)
.+|+|+|+.|+|||||++.|+.... +..... ..++|.......+.+. + ...+.+|||||..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 6899999999999999999975421 000000 1134444333333332 2 256899999996552
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
... ...++..+|++++|+|+++..+......+..+.. .+ . |+++++||+|+... . .++...
T Consensus 84 -------~~~----v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~~--i--piIiViNKiDl~~~--~-~~~~~~ 144 (595)
T TIGR01393 84 -------SYE----VSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-ND--L--EIIPVINKIDLPSA--D-PERVKK 144 (595)
T ss_pred -------HHH----HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-cC--C--CEEEEEECcCCCcc--C-HHHHHH
Confidence 122 2234457899999999986676665554443332 12 2 89999999998643 1 122222
Q ss_pred ccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. +...+ +.. +......||+++.++.+|++.+.+.++.
T Consensus 145 e-----l~~~l---g~~---~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 145 E-----IEEVI---GLD---ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred H-----HHHHh---CCC---cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 2 22222 211 0112467999999999999999887754
No 223
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=5.3e-11 Score=96.66 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=88.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEee--C-CceEEEEeCCCCCCCCCCcH---HHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLK--D-GQVVNVIDTPGLFDLSAGSE---FVGK 91 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~--~-~~~~~lvDtpG~~~~~~~~~---~~~~ 91 (352)
..+|..||.+|.|||||+.+|++... .+.+++.. .++......+... + .-.++|+||.||+|.-..++ .+..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f-~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKF-ESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhcccc-CCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 36899999999999999999997643 33333222 1222211112221 1 23678999999998542221 1111
Q ss_pred ----HHHHH----------Hh-cccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchh
Q 018636 92 ----EIVKC----------LG-MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK 155 (352)
Q Consensus 92 ----~~~~~----------~~-~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~ 155 (352)
++..+ +. .....+|+++|.+.++ +.+...+...++.+.. .+ ++|-|+-|.|.... .
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds----kV--NIIPvIAKaDtisK--~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS----KV--NIIPVIAKADTISK--E 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh----hh--hhHHHHHHhhhhhH--H
Confidence 11111 11 1225689999999887 4454444444433322 22 88888999998876 6
Q ss_pred cHHHHhcccCChhHHHHHHhcCCcEEEEcCCC
Q 018636 156 TLEDFLGHECPKPLKEILQLCDNRCVLFDNKT 187 (352)
Q Consensus 156 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (352)
.|..|-.. +..-+...+-.++.|....
T Consensus 193 eL~~FK~k-----imsEL~sngv~IYqfPtDd 219 (406)
T KOG3859|consen 193 ELKRFKIK-----IMSELVSNGVQIYQFPTDD 219 (406)
T ss_pred HHHHHHHH-----HHHHHHhcCceeeeccchH
Confidence 67666554 3333334345555555443
No 224
>PRK10218 GTP-binding protein; Provisional
Probab=99.45 E-value=2.2e-12 Score=120.56 Aligned_cols=167 Identities=15% Similarity=0.180 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC-ccccc-------------CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK-AFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
-.+|+|+|+.++|||||++.|+... .+... ....++|.......+.+ ++..+++|||||..+..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH-
Confidence 3689999999999999999998632 11110 01123344444445555 68899999999976531
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~ 164 (352)
..+ ..++..+|++++|+|+...........+..+.. .+. |.++++||+|.... ..++.+..
T Consensus 83 ------~~v----~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~-~gi----p~IVviNKiD~~~a---~~~~vl~e- 143 (607)
T PRK10218 83 ------GEV----ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA-YGL----KPIVVINKVDRPGA---RPDWVVDQ- 143 (607)
T ss_pred ------HHH----HHHHHhCCEEEEEEecccCccHHHHHHHHHHHH-cCC----CEEEEEECcCCCCC---chhHHHHH-
Confidence 222 223467899999999986666666666665544 243 78999999998644 22222222
Q ss_pred CChhHHHHHHhcCCcEE-EEcCCCcccccchH----------HHHHHHHHHHHHHHh
Q 018636 165 CPKPLKEILQLCDNRCV-LFDNKTKDEAKGTE----------QVRQLLSLVNSVIVQ 210 (352)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~----------~~~~L~~~i~~~~~~ 210 (352)
+..++..++.... .-.+....|+.++. ++..|++.|.+.++.
T Consensus 144 ----i~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 144 ----VFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred ----HHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 2223221111000 00112345665555 578888888887754
No 225
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.45 E-value=6.7e-13 Score=109.51 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccccc---C--------------CCCCcceeeEeEEEEee----CCceEEEEeCCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKAS---A--------------GSSGVTKTCEMKTTVLK----DGQVVNVIDTPGL 79 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~---~--------------~~~~~t~~~~~~~~~~~----~~~~~~lvDtpG~ 79 (352)
+|+|+|+.|+|||||++.|++....... . ...+++.......+.+. ....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864321100 0 00112222222222221 2356889999997
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
.+. ... ...++..+|++++|+|+....+......+..+.. .+ .|+++++||+|..
T Consensus 82 ~~f-------~~~----~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-~~----~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF-------MDE----VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-EG----LPIVLVINKIDRL 136 (213)
T ss_pred cch-------HHH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccC
Confidence 652 111 2223357899999999986666555454444432 12 2899999999985
No 226
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.44 E-value=3.4e-12 Score=109.13 Aligned_cols=115 Identities=22% Similarity=0.267 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcc--ccc-CCCC-------------CcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAF--KAS-AGSS-------------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~--~~~-~~~~-------------~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
+|+|+|++|+|||||+|.|++.... ..+ ...+ ..+.......+.+ ++..+++|||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence 4899999999999999999753210 000 0011 1122223334445 6788999999996431
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
...... ++..+|++++|++++..........+..+.. .+. |.++++||+|....
T Consensus 78 -----~~~~~~----~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-~~~----p~iivvNK~D~~~~ 131 (268)
T cd04170 78 -----VGETRA----ALRAADAALVVVSAQSGVEVGTEKLWEFADE-AGI----PRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHHH----HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECCccCCC
Confidence 122222 3347899999999986565555555555443 232 89999999998754
No 227
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.44 E-value=1.2e-12 Score=118.35 Aligned_cols=168 Identities=11% Similarity=0.116 Sum_probs=104.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEE---------------Eee---------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT---------------VLK--------------- 66 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~---------------~~~--------------- 66 (352)
...+|+++|+-.+|||||+.+|+|....... ....+.|....+... .+.
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 3489999999999999999999986542211 001112211111100 000
Q ss_pred --CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-CCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 67 --DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 67 --~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
-...++++||||. +.+.+.+......+|++++|+++... .....+..+..+. .++-. +++++
T Consensus 113 ~~~~~~i~~IDtPGH-----------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi~---~iIVv 177 (460)
T PTZ00327 113 MTLKRHVSFVDCPGH-----------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKLK---HIIIL 177 (460)
T ss_pred ccccceEeeeeCCCH-----------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCCC---cEEEE
Confidence 0246899999993 33444444444588999999999853 3444455554443 34432 78999
Q ss_pred EeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+||+|+.+. .++++.... +..++..+.. ......+.|+.++.++..|++.|...++.
T Consensus 178 lNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~---~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 178 QNKIDLVKE--AQAQDQYEE-----IRNFVKGTIA---DNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EecccccCH--HHHHHHHHH-----HHHHHHhhcc---CCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 999999865 566555544 5544433211 12234578999999999999999976653
No 228
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.44 E-value=4.6e-12 Score=104.57 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE----------------------------------------
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE---------------------------------------- 59 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~---------------------------------------- 59 (352)
..|+|||++|+|||||+++|+|...++.+ .+.+|....
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~--~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRG--SGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccC--CCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 58999999999999999999997533221 122221100
Q ss_pred -----------eEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhcccC-CccEEEEEEecCCCCCHHH-HHH
Q 018636 60 -----------MKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEE-ETA 124 (352)
Q Consensus 60 -----------~~~~~~~~~~~~~lvDtpG~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~-~~~ 124 (352)
...+..++...++||||||+..... ....+...+...+..+.. ..+.+++|+++...+...+ ...
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0001111235688999999975321 123334445554544444 3458899998876666655 344
Q ss_pred HHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 125 VHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 125 l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+.+.. .+. ++++|+||+|....
T Consensus 185 a~~ld~-~~~----rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDP-QGE----RTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHH-cCC----cEEEEEECCCCCCc
Confidence 444433 233 89999999999865
No 229
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.44 E-value=2e-12 Score=102.11 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=93.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce--eeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
+|+++|..|+|||||++.+.+... . .....|. ......+.. ++. .+.+||++|... ...+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~---~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~--------~~~~~-- 65 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-P---ENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQER--------FDSLR-- 65 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-T---SSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGG--------GHHHH--
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-c---cccccccccccccccccc-ccccccccccccccccc--------ccccc--
Confidence 689999999999999999987653 1 1122222 222222333 333 578999999432 11222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|++++++-+-.. ..++..+........ |++|+.||.|......-..++ ...+...
T Consensus 66 -~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~--~iivvg~K~D~~~~~~v~~~~---------~~~~~~~ 133 (162)
T PF00071_consen 66 -DIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDI--PIIVVGNKSDLSDEREVSVEE---------AQEFAKE 133 (162)
T ss_dssp -HHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTS--EEEEEEETTTGGGGSSSCHHH---------HHHHHHH
T ss_pred -cccccccccccccccccccccccccccccccccccccccc--cceeeeccccccccccchhhH---------HHHHHHH
Confidence 223468899999999983322222 245555555555223 899999999987530011111 3334455
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..|+ .+|++++.++.+++..+.+.+
T Consensus 134 ~~~~~~------e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 134 LGVPYF------EVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTSEEE------EEBTTTTTTHHHHHHHHHHHH
T ss_pred hCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 454444 456777889999888766543
No 230
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.44 E-value=1.5e-13 Score=102.51 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=63.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccccc--CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
||+|+|..|+|||||++.|++....... ......+.......... +...+.++|++|......... .
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~--------~-- 69 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQ--------F-- 69 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSH--------H--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccccc--------c--
Confidence 6999999999999999999987753000 11111122211111111 233478999999643111100 0
Q ss_pred cccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
....+|++++|+|+++.-+-... .++.++....+.....|+++|.||.|
T Consensus 70 -~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 70 -FLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -HHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -hhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 12467999999999833333331 23334444432122249999999988
No 231
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.44 E-value=3e-12 Score=120.09 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=93.9
Q ss_pred cCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCcc
Q 018636 26 GRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105 (352)
Q Consensus 26 G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (352)
|.+|+|||||+|.|+|... ..+..+ +.|.......+.+ ++..+.++||||..+...... .+.+..... ...++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~p-G~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~l-~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWP-GVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDYL-LNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCC-CeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHHH-hhcCCC
Confidence 8999999999999999864 222322 2444444444555 677899999999876543221 122222111 124789
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcC
Q 018636 106 AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185 (352)
Q Consensus 106 ~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (352)
++++|+|.+ .+... +.+........ .|+++++||+|.... ..+... .+.+....+..+
T Consensus 75 vvI~VvDat-~ler~----l~l~~ql~~~~--~PiIIVlNK~Dl~~~--~~i~~d--------~~~L~~~lg~pv----- 132 (591)
T TIGR00437 75 LVVNVVDAS-NLERN----LYLTLQLLELG--IPMILALNLVDEAEK--KGIRID--------EEKLEERLGVPV----- 132 (591)
T ss_pred EEEEEecCC-cchhh----HHHHHHHHhcC--CCEEEEEehhHHHHh--CCChhh--------HHHHHHHcCCCE-----
Confidence 999999998 44322 22222222112 299999999998643 222111 222333334333
Q ss_pred CCcccccchHHHHHHHHHHHHHH
Q 018636 186 KTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 186 ~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.++|++++.+++++++.+.+..
T Consensus 133 -v~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 133 -VPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred -EEEECCCCCCHHHHHHHHHHHh
Confidence 3578888999999999988764
No 232
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.44 E-value=3.3e-12 Score=99.39 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=83.9
Q ss_pred EEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
|+|++|+|||||+|.|.+...... ....|. ......... .+..+.++|+||..... ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~---~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE---EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc---ccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence 589999999999999998765211 111121 222222221 25678999999965421 111223
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHH--HHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAV--HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
...+|++++|++++...+......+ ..+.... ....|+++++||+|.... ....... . ..........
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~--~~~~~~~-~-----~~~~~~~~~~ 135 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEE--RVVSEEE-L-----AEQLAKELGV 135 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEeccccccc--cchHHHH-H-----HHHHHhhcCC
Confidence 4678999999999843333333322 1111111 122399999999998765 2222211 0 1112222233
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
.++ ..|+..+.++.++++++.
T Consensus 136 ~~~------~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 136 PYF------ETSAKTGENVEELFEELA 156 (157)
T ss_pred cEE------EEecCCCCChHHHHHHHh
Confidence 333 345556678888888753
No 233
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.43 E-value=4.5e-13 Score=95.00 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.||++||..|||||||.++|-|... ....+.. +++ +.. ..|||||.+.. ...+..++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~----lykKTQA-------ve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT----LYKKTQA-------VEF-NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh----hhcccce-------eec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 5899999999999999999999875 2211111 122 111 26899997653 2344444554
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
....++++++|..++++.+.-- ..+...+. +++|-|+||.|+.++ ..++. .+.++...|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~----p~f~~~~~----k~vIgvVTK~DLaed--~dI~~---------~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFP----PGFLDIGV----KKVIGVVTKADLAED--ADISL---------VKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCC----cccccccc----cceEEEEecccccch--HhHHH---------HHHHHHHcCCc
Confidence 5568899999998873322211 11222222 379999999999865 33331 33444444533
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.++ ..|+.++.++++|++.+..
T Consensus 122 ~IF-----~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 122 PIF-----ETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ceE-----EEeccCcccHHHHHHHHHh
Confidence 332 3355567899999887654
No 234
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.43 E-value=8.4e-12 Score=101.11 Aligned_cols=160 Identities=16% Similarity=0.080 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCHHHHHH-HhhCCCccccc--CCCCCccee--eEeE-E--------EEeeCC--ceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGN-SILGRKAFKAS--AGSSGVTKT--CEMK-T--------TVLKDG--QVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin-~l~g~~~~~~~--~~~~~~t~~--~~~~-~--------~~~~~~--~~~~lvDtpG~~~~~ 83 (352)
.+|+++|..|+|||||+. .+.+... ... ......|.. ..+. . ..+ ++ ..+.+|||+|....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~-~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTL-TQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCc-ccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChhh-
Confidence 689999999999999995 5543321 100 111112221 0000 0 012 33 45689999995421
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH----
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL---- 157 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l---- 157 (352)
+ ...++.++|++++|+|++++-+-... .++..+..... .. |+++|.||+|+........
T Consensus 80 ---------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~--piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 80 ---------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RV--PVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred ---------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CC--CEEEEEEchhccccccchhhhcc
Confidence 1 12356899999999999855554433 35565655432 22 8999999999853200000
Q ss_pred ---------HHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 158 ---------EDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 158 ---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
...+. ......+....+..|+ .+||+++.++.++++.+.+
T Consensus 145 ~~~~~~~~~~~~V~---~~e~~~~a~~~~~~~~------E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 145 RPLARPIKNADILP---PETGRAVAKELGIPYY------ETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccccccCCccC---HHHHHHHHHHhCCEEE------EcCCCCCCCHHHHHHHHHH
Confidence 00000 0112334444444343 5788999999999987654
No 235
>PLN00023 GTP-binding protein; Provisional
Probab=99.42 E-value=3.7e-12 Score=108.45 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=76.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEee--------------CCceEEEEeCC
Q 018636 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLK--------------DGQVVNVIDTP 77 (352)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~--------------~~~~~~lvDtp 77 (352)
.+.....+|+|+|..|+|||||++.+.+... ......|..+. ...+.+. ....+.||||+
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F----~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTA 91 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSS----IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVS 91 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCc----ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECC
Confidence 3445568999999999999999999997654 11122232222 2222321 12347899999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc----------cccceEEEEEeC
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK----------NVFDYMIVVFTG 146 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~----------~~~~~~ilv~nk 146 (352)
|-. .+.......+.+++++|+|+|++++-+-... .++..+...... ....|++||.||
T Consensus 92 GqE-----------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 92 GHE-----------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred CCh-----------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 943 2333344456899999999999854333322 355555543210 011389999999
Q ss_pred CCCCCc
Q 018636 147 GDDLED 152 (352)
Q Consensus 147 ~D~~~~ 152 (352)
+|+...
T Consensus 161 ~DL~~~ 166 (334)
T PLN00023 161 ADIAPK 166 (334)
T ss_pred cccccc
Confidence 998643
No 236
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.42 E-value=5e-12 Score=103.22 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
+|+|+|++|+|||||++.|.+... ....+ ++......... ..+..+.||||||... +...+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~----~~t~~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~~ 65 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKY----RSTVT-SIEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDKL 65 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC----CCccC-cEeecceEEEeecCCCCceEEEEECCCCHH-----------HHHHH
Confidence 689999999999999999987643 11111 11111111211 1356789999999543 22222
Q ss_pred hcccCCc-cEEEEEEecCCCCCHHHHHHHHHHHHhh----cccccceEEEEEeCCCCCCc
Q 018636 98 GMAKDGI-HAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 98 ~~~~~~~-~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~ilv~nk~D~~~~ 152 (352)
...+... ++++||+|+. .....-.....++..++ ......|++|+.||+|+...
T Consensus 66 ~~~~~~~~~~vV~VvD~~-~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 66 LETLKNSAKGIVFVVDSA-TFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHhccCCEEEEEEECc-cchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 2334455 9999999998 33111111112211111 10012399999999998754
No 237
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.42 E-value=3.8e-12 Score=115.65 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=94.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC---cc------------------------c--ccCCCCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK---AF------------------------K--ASAGSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~---~~------------------------~--~~~~~~~~t~~~~~~~~~~~~~ 68 (352)
...+|+++|+.++|||||+..|+... .. . ......+.|.......+.+ ++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CC
Confidence 45899999999999999999886311 00 0 0001122444454555555 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhcccccceEE
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMI 141 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~i 141 (352)
..++|+||||.. .+...+......+|++++|+|+.... ....+..+..+.. +|-. ++|
T Consensus 85 ~~i~lIDtPGh~-----------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi~---~ii 149 (446)
T PTZ00141 85 YYFTIIDAPGHR-----------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGVK---QMI 149 (446)
T ss_pred eEEEEEECCChH-----------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCCC---eEE
Confidence 889999999933 33333344446889999999998543 2455555555544 3532 578
Q ss_pred EEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHH
Q 018636 142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198 (352)
Q Consensus 142 lv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~ 198 (352)
+++||+|.... +...+++.+.. +..++...+.... --...+.|+.++.++.
T Consensus 150 v~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g~~~~-~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 150 VCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVGYNPE-KVPFIPISGWQGDNMI 202 (446)
T ss_pred EEEEccccccchhhHHHHHHHHHH-----HHHHHHhcCCCcc-cceEEEeecccCCCcc
Confidence 89999995321 22455555555 6656554432100 0112356666677664
No 238
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.41 E-value=5.9e-12 Score=118.23 Aligned_cols=162 Identities=17% Similarity=0.196 Sum_probs=98.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-ccc---c---------CCCCCcceeeEeEEEEee--C--CceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKA---S---------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~---~---------~~~~~~t~~~~~~~~~~~--~--~~~~~lvDtpG~~~ 81 (352)
-.+|+|+|+.++|||||+..|+.... ... + ....++|.......+.|. + +..+++|||||..+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 36899999999999999999974321 000 0 001233433333333332 2 45789999999765
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
. ...+. .++..+|++++|+|+++.....+...+..+.. .+. |+++++||+|+... ..+...
T Consensus 87 F-------~~~v~----~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~~l----piIvViNKiDl~~a---~~~~v~ 147 (600)
T PRK05433 87 F-------SYEVS----RSLAACEGALLVVDASQGVEAQTLANVYLALE-NDL----EIIPVLNKIDLPAA---DPERVK 147 (600)
T ss_pred H-------HHHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-CCC----CEEEEEECCCCCcc---cHHHHH
Confidence 2 12222 23457899999999987776666555544432 222 89999999998643 122222
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. +...+ +.. .......||.++.++.+|++.|...++.
T Consensus 148 ~e-----i~~~l---g~~---~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 148 QE-----IEDVI---GID---ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HH-----HHHHh---CCC---cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 22 22222 111 0112467899999999999999887764
No 239
>PLN03126 Elongation factor Tu; Provisional
Probab=99.41 E-value=6.7e-12 Score=114.42 Aligned_cols=138 Identities=15% Similarity=0.213 Sum_probs=88.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCccc--------------ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
.+..+|+++|+.++|||||++.|++..... ......+.|.......+.+ ++..++++||||..
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~-- 155 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHA-- 155 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHH--
Confidence 455899999999999999999998532100 0011122344444444444 67889999999943
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
.+...+......+|++++|+|+........+..+..+... +.. ++++++||+|+... +.+.+.+.
T Consensus 156 ---------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi~---~iIvvvNK~Dl~~~--~~~~~~i~ 220 (478)
T PLN03126 156 ---------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GVP---NMVVFLNKQDQVDD--EELLELVE 220 (478)
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEecccccCH--HHHHHHHH
Confidence 2333333334578999999999877777777777766543 431 47788999999764 33333333
Q ss_pred ccCChhHHHHHHhc
Q 018636 163 HECPKPLKEILQLC 176 (352)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (352)
. .+..++..+
T Consensus 221 ~----~i~~~l~~~ 230 (478)
T PLN03126 221 L----EVRELLSSY 230 (478)
T ss_pred H----HHHHHHHhc
Confidence 1 266666554
No 240
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=2.1e-11 Score=93.24 Aligned_cols=119 Identities=17% Similarity=0.254 Sum_probs=84.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccc-----cCCCCC---cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~ 90 (352)
..+|+|+|+.|+||||+++.+........ ..+... .|+...+....+..+..+++++||| .
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG-----------q 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG-----------Q 78 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC-----------c
Confidence 36999999999999999999987652110 011111 3444455556665568999999999 3
Q ss_pred HHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.++.-.+.....++.+.++++|.+...+..+...++.+.....- |++|..||.|+.+.
T Consensus 79 ~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~i----p~vVa~NK~DL~~a 136 (187)
T COG2229 79 ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPI----PVVVAINKQDLFDA 136 (187)
T ss_pred HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCC----CEEEEeeccccCCC
Confidence 44444444555788999999998856666777777777765442 89999999999876
No 241
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.39 E-value=2e-11 Score=101.50 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-EeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+++|..|+|||||++.+.+... ......|........ .... ...+.+|||+| ..++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g-----------q~~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF----PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG-----------QEEYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC----cccCCCceeeeeEEEEEEeCCCEEEEEeecCCC-----------HHHHHHH
Confidence 7999999999999999999998776 222222322222211 1112 34567999999 4555566
Q ss_pred HhcccCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
...++.+++++++|++... +....-..+...+....+... +++++.||+|+...
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~--~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDV--PILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCc--eEEEEecccccccc
Confidence 6667789999999999873 222333345555555543222 89999999999865
No 242
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.39 E-value=4.1e-12 Score=104.36 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCC--------------CCCcceeeEeEEEEee---------CCceEEEEeC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLK---------DGQVVNVIDT 76 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------~~~~~~lvDt 76 (352)
++|+++|+.++|||||+..|+.......... ..+.|.........+. .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999974431100000 0112222222222221 1567889999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
||..+. .. ....++..+|++++|+|+....+......+..+... +. |+++++||+|+.
T Consensus 81 PG~~~f-------~~----~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~~----p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-------SS----EVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-RV----KPVLVINKIDRL 138 (222)
T ss_pred CCcccc-------HH----HHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCcc
Confidence 997653 12 223334578999999999977777776666655432 32 899999999976
No 243
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.38 E-value=1.5e-11 Score=89.84 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+..|+|.+|+|||+|+-....... ++....++..+..+..+.+ +|. .+.||||.| .+.+.....
T Consensus 10 kllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAG-----------qErFrtits 75 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAG-----------QERFRTITS 75 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeec-CCcEEEEEEeeccc-----------HHHHHHHHH
Confidence 467899999999999988875533 1111111223344445555 344 458899999 566666677
Q ss_pred cccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.+|.+.|++++|+|+++.-| ..-.+||+.+..-+.. + |-++|.||.|..++ ..+...- .+......+
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v--~~vLVGNK~d~~~R--rvV~t~d-------Ar~~A~~mg 143 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-V--PKVLVGNKNDDPER--RVVDTED-------ARAFALQMG 143 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc-c--cceecccCCCCccc--eeeehHH-------HHHHHHhcC
Confidence 78899999999999984333 3345678888776653 3 88999999998866 3332211 111222222
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
-.+| .+|++...++...+..|.+.+
T Consensus 144 ie~F------ETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 144 IELF------ETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred chhe------ehhhhhcccchHHHHHHHHHH
Confidence 2222 456777788888888777665
No 244
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.37 E-value=5.7e-12 Score=109.58 Aligned_cols=118 Identities=22% Similarity=0.223 Sum_probs=66.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-CCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..+|||+|.+|+|||||||+|.|-..-..+... |.+.+......+..+.-.++++||.||++.+....+. +...+
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~----Yl~~~ 110 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEE----YLKEV 110 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHH----HHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHH----HHHHc
Confidence 479999999999999999999874321111222 2221222222333445567999999998765433332 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~ 149 (352)
. +...|.|+++.+ . +++..+......+..+ |+ ++.+|-||+|.
T Consensus 111 ~--~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~ 153 (376)
T PF05049_consen 111 K--FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDS 153 (376)
T ss_dssp T--GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred c--ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-CC----cEEEEEecccc
Confidence 1 234576666543 4 8999999888888775 65 89999999995
No 245
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.35 E-value=1.7e-11 Score=117.95 Aligned_cols=118 Identities=20% Similarity=0.228 Sum_probs=81.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccc---ccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFK---ASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~---~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
.-++|+|+|+.|+|||||+|.|+...... .... ..++|.......+.+ ++..+++|||||..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVD 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcc
Confidence 34799999999999999999996422100 0001 123455555566666 788999999999876
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.. .... .++..+|++++|+|+.......+...+..+... +. |+++++||+|+...
T Consensus 88 ~~-------~~~~----~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~----p~ivviNK~D~~~~ 142 (689)
T TIGR00484 88 FT-------VEVE----RSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-EV----PRIAFVNKMDKTGA 142 (689)
T ss_pred hh-------HHHH----HHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 31 1222 233467999999999877777766666665543 32 89999999998865
No 246
>PRK12739 elongation factor G; Reviewed
Probab=99.35 E-value=2e-11 Score=117.37 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=82.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc---ccccC-------------CCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA---FKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~---~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
.-++|+|+|+.++|||||++.|+.... ..... ...++|.......+.+ ++..++++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHHH
Confidence 447899999999999999999964211 00000 1233455555556666 788999999999643
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
. ..+ ...+...+|++++|+|+...+...+...+..+... +. |.++++||+|....
T Consensus 86 f-------~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~~----p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 F-------TIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-GV----PRIVFVNKMDRIGA 140 (691)
T ss_pred H-------HHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 1 222 33334577999999999877888777777766553 43 88999999999865
No 247
>PRK00007 elongation factor G; Reviewed
Probab=99.34 E-value=2.3e-11 Score=116.91 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=83.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh---CCCcccccC-------------CCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
.-++|+|+|+.++|||||++.|+ |........ ...+.|.......+.+ .+..++++||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHH
Confidence 34799999999999999999996 432110000 1223455555555666 788999999999654
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
. ..++.. +...+|++++|+|+...+...+...+..+... +. |.++++||+|....
T Consensus 88 f-------~~ev~~----al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~----p~iv~vNK~D~~~~ 142 (693)
T PRK00007 88 F-------TIEVER----SLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-KV----PRIAFVNKMDRTGA 142 (693)
T ss_pred H-------HHHHHH----HHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 2 222333 33467999999999878888888888877654 43 78999999998865
No 248
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.9e-11 Score=89.24 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=98.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..++.++|...+|||||+...++...... ...++..+..+..+.-. ....+.+|||.|. +.+....
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~a--fvsTvGidFKvKTvyr~~kRiklQiwDTagq-----------EryrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ-----------ERYRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccc--eeeeeeeeEEEeEeeecccEEEEEEEecccc-----------hhhhHHH
Confidence 35999999999999999999998764111 11112223333332221 2346789999993 3344445
Q ss_pred hcccCCccEEEEEEecCCCCCH-HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..++++++++++++|.++.-+- .-..+.-.++..+-.++ ++|++.||||+.+. ..+... ....+....
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~na--qvilvgnKCDmd~e--Rvis~e-------~g~~l~~~L 156 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNA--QVILVGNKCDMDSE--RVISHE-------RGRQLADQL 156 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCc--eEEEEecccCCccc--eeeeHH-------HHHHHHHHh
Confidence 5677899999999999833222 22234444444332233 89999999999865 322210 123344444
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|-.++ ..|++.+-++.++++.+...+..
T Consensus 157 GfefF------EtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 157 GFEFF------ETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred ChHHh------hhcccccccHHHHHHHHHHHHHH
Confidence 54443 45677778888888877666543
No 249
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1e-11 Score=95.08 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+++|-.||||||++..|--...+.. ..|....+..+.+ .+..+++||.-|... ++..
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R~l 77 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LRPL 77 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------cccc
Confidence 4568999999999999999988854444222 3455666666666 688899999999533 2333
Q ss_pred HhcccCCccEEEEEEecCCC--CCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNR--FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...++.+.++++||+|.+++ +...-....+.+...-- ...|+++..||.|.... ....+.-+. + .+-.
T Consensus 78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l--~~~~llv~aNKqD~~~a--ls~~ei~~~-----L-~l~~ 147 (181)
T KOG0070|consen 78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPEL--RNAPLLVFANKQDLPGA--LSAAEITNK-----L-GLHS 147 (181)
T ss_pred hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCccc--CCceEEEEechhhcccc--CCHHHHHhH-----h-hhhc
Confidence 44566889999999998832 22211111122211110 12388888999998876 443333222 1 1223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.++..+++ ..++|.++.++.+-++++...+..
T Consensus 148 l~~~~w~i----q~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 148 LRSRNWHI----QSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cCCCCcEE----eeccccccccHHHHHHHHHHHHhc
Confidence 33333443 244667789999999998877643
No 250
>PRK13351 elongation factor G; Reviewed
Probab=99.33 E-value=3e-11 Score=116.55 Aligned_cols=118 Identities=20% Similarity=0.265 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcc---cccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAF---KASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~---~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
.-.+|+|+|+.|+|||||++.|+..... ..... ....|.......+.+ .+..+.+|||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 4479999999999999999999742210 00000 122344444455566 688999999999654
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
. ... ...++..+|++++|+|++..........+..+... +. |+++++||+|+...
T Consensus 86 f-------~~~----~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~~----p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 F-------TGE----VERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-GI----PRLIFINKMDRVGA 140 (687)
T ss_pred H-------HHH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-CC----CEEEEEECCCCCCC
Confidence 2 122 22334578999999999867766666666655442 32 89999999998754
No 251
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.32 E-value=1.3e-11 Score=100.18 Aligned_cols=134 Identities=15% Similarity=0.132 Sum_probs=70.2
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HH-HHHHHHHhhcccccceEEEEEeCC
Q 018636 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ET-AVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 70 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
...||||||..+.-..... +.-+...+.. ..+.+++||+|....-+... .. .|-.+..++.-.. |+|+++||+
T Consensus 117 ~~~liDTPGQIE~FtWSAs-GsIIte~las--s~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktkl--p~ivvfNK~ 191 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSAS-GSIITETLAS--SFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKL--PFIVVFNKT 191 (366)
T ss_pred CEEEEcCCCceEEEEecCC-ccchHhhHhh--cCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccC--CeEEEEecc
Confidence 4679999997652211110 1222223332 35678999998762222221 12 2222223333333 999999999
Q ss_pred CCCCcchhcHHHHhcc----------cCChhHHHHHHhcCCcEEEE-c--CCCcccccchHHHHHHHHHHHHHHHh
Q 018636 148 DDLEDHEKTLEDFLGH----------ECPKPLKEILQLCDNRCVLF-D--NKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~----------~~~~~~~~~~~~~~~~~~~~-~--~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|..+. ....+++.. ..+.+...+.....-..-.| . ..+.+|+.+|.|.++++..|.+.+.+
T Consensus 192 Dv~d~--~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 192 DVSDS--EFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred ccccc--HHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 99876 333333322 11222222222111000001 1 12356888999999999999999876
No 252
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.32 E-value=9.2e-11 Score=101.73 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=80.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccc-------------cCCC--C-Ccce-eeEe---EEEEeeCC----ceE
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-------------SAGS--S-GVTK-TCEM---KTTVLKDG----QVV 71 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-------------~~~~--~-~~t~-~~~~---~~~~~~~~----~~~ 71 (352)
.++.+.|+|+|+.++|||||||.+++..+.+. .+++ | ++|+ ...+ ....+... -++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 35668999999999999999999999832221 1122 2 2233 3222 23333223 578
Q ss_pred EEEeCCCCCCCCCCcHHHHHH--------------HHHH----Hhccc-CCccEEEEEE-ecC------CCCCHHHHHHH
Q 018636 72 NVIDTPGLFDLSAGSEFVGKE--------------IVKC----LGMAK-DGIHAFLVVF-SVT------NRFSQEEETAV 125 (352)
Q Consensus 72 ~lvDtpG~~~~~~~~~~~~~~--------------~~~~----~~~~~-~~~~~~l~v~-~~~------~~~~~~~~~~l 125 (352)
.++||+||.+.......-... +..+ ..... ..++..++|. |.+ +.+...+.+.+
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999998754321110000 0000 01111 3667777777 663 45667788888
Q ss_pred HHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 126 HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 126 ~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..++.. +. |+++|+|+.|-...
T Consensus 174 ~eLk~~-~k----PfiivlN~~dp~~~ 195 (492)
T TIGR02836 174 EELKEL-NK----PFIILLNSTHPYHP 195 (492)
T ss_pred HHHHhc-CC----CEEEEEECcCCCCc
Confidence 888875 44 99999999995433
No 253
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.31 E-value=3.3e-11 Score=111.37 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=76.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC--CCcccccCC------------------CCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG--RKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g--~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
...+|+|+|+.|+|||||++.|+- ......+.. ..+++.......+.+ ++..+.++|||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECC
Confidence 447999999999999999998752 111000000 011233333344455 68899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|..+. ... ...++..+|++++|+|+...+.......+..+.. .+. |+++++||+|....
T Consensus 89 G~~df-------~~~----~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~~----PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDF-------SED----TYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RDT----PIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhH-------HHH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cCC----CEEEEEECccccCC
Confidence 97542 122 2223457899999999986666665666554443 232 89999999998654
No 254
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.30 E-value=1.8e-10 Score=99.64 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=67.4
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHH-HHHhhcccccceEEEEEeC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHR-LPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ilv~nk 146 (352)
+..+.|+||+|...... . + ...+|.++++.++. ++.+...+.. +.+. ..++|+||
T Consensus 148 g~d~viieT~Gv~qs~~---~----i-------~~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSET---A----V-------AGMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccchh---H----H-------HHhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 56788999999885321 1 1 12478988887532 2333333222 2222 35899999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEE-cCCCcccccchHHHHHHHHHHHHHHH
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+|+... ......... +...+.....+.-.+ .++..+|+.++.++++|++.|.+.++
T Consensus 204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998865 434444443 444444322221112 23456788999999999999999876
No 255
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.30 E-value=5.8e-11 Score=107.91 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=94.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhh---CCCcc------------------------c--ccCCCCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSIL---GRKAF------------------------K--ASAGSSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~---g~~~~------------------------~--~~~~~~~~t~~~~~~~~~~~~ 67 (352)
.+..+|+++|+.++|||||+-.|+ |.... . ......++|.......+.+ .
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 345899999999999999997775 21100 0 0011123455555555555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-CC------HHHHHHHHHHHHhhcccccceE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FS------QEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~------~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
+..++++|||| ..++...+......+|+.++|+|+... +. ...+..+.++.. +|-. ++
T Consensus 84 ~~~i~liDtPG-----------h~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi~---~i 148 (447)
T PLN00043 84 KYYCTVIDAPG-----------HRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGVK---QM 148 (447)
T ss_pred CEEEEEEECCC-----------HHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCCC---cE
Confidence 78999999999 344554555555689999999999842 21 333444443333 3432 57
Q ss_pred EEEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHH
Q 018636 141 IVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198 (352)
Q Consensus 141 ilv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~ 198 (352)
++++||+|.... ....+++.+.+ +..++...+-..-. -...+.|+.++.++.
T Consensus 149 IV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g~~~~~-~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 149 ICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVGYNPDK-IPFVPISGFEGDNMI 202 (447)
T ss_pred EEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcCCCccc-ceEEEEecccccccc
Confidence 888999997632 12345555555 66666654421000 011255666666653
No 256
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.29 E-value=5.9e-11 Score=109.73 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=76.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC--CCcccccCC------------------CCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG--RKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g--~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
...+|+|+|+.|+|||||++.|+. ......+.. ..+.+.......+.+ ++..+++||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECC
Confidence 347999999999999999999852 111000000 011222333334455 68889999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|..+. ...... ++..+|++++|+|++..+.......+..+.. .+. |+++++||+|....
T Consensus 88 G~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~i----Piiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDF-------SEDTYR----TLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-RDT----PIFTFINKLDRDGR 146 (526)
T ss_pred Cchhh-------HHHHHH----HHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-cCC----CEEEEEECCccccc
Confidence 97552 122222 2347899999999986676665566555443 232 89999999998765
No 257
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.29 E-value=1.8e-13 Score=125.34 Aligned_cols=138 Identities=16% Similarity=0.062 Sum_probs=77.8
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEeeCCceE----EEEeCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDGQVV----NVIDTPGL 79 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~----~lvDtpG~ 79 (352)
+.+++++... .+.+|+|+|+||+|||||++.|+|... +..|.+..... +.++.. +...+ +++|...-
T Consensus 337 l~~~~s~~i~--~g~riaiiG~NG~GKSTLlk~l~g~~~----~~~G~v~~g~~v~igyf~Q-~~~~l~~~~t~~d~l~~ 409 (530)
T COG0488 337 LLKDLSFRID--RGDRIAIVGPNGAGKSTLLKLLAGELG----PLSGTVKVGETVKIGYFDQ-HRDELDPDKTVLEELSE 409 (530)
T ss_pred eecCceEEec--CCCEEEEECCCCCCHHHHHHHHhhhcc----cCCceEEeCCceEEEEEEe-hhhhcCccCcHHHHHHh
Confidence 4444444443 448999999999999999999998876 44454443222 222222 11111 12211110
Q ss_pred CCCCCCcHHHHHHHHHHHhc-ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchh
Q 018636 80 FDLSAGSEFVGKEIVKCLGM-AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEK 155 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~ 155 (352)
...... ...+..++.. .+.+.++ ...+. .+|++++.++.+++.++... |++|+ +||+|..+. +
T Consensus 410 ~~~~~~----e~~~r~~L~~f~F~~~~~---~~~v~-~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~ 476 (530)
T COG0488 410 GFPDGD----EQEVRAYLGRFGFTGEDQ---EKPVG-VLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--E 476 (530)
T ss_pred hCcccc----HHHHHHHHHHcCCChHHH---hCchh-hcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--H
Confidence 010001 1222222221 1122222 11223 78899999999999888764 67776 799999866 7
Q ss_pred cHHHHhcc
Q 018636 156 TLEDFLGH 163 (352)
Q Consensus 156 ~l~~~l~~ 163 (352)
.|++.+..
T Consensus 477 aLe~aL~~ 484 (530)
T COG0488 477 ALEEALLD 484 (530)
T ss_pred HHHHHHHh
Confidence 77776665
No 258
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.29 E-value=8.7e-11 Score=101.61 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=53.0
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--------------------eC---CceEEEEeCCC
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KD---GQVVNVIDTPG 78 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~lvDtpG 78 (352)
|+|||.+|+|||||+|+|++... .....+. .|....+....+ .+ ...+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pf-tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPF-TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCC-ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 68999999999999999998763 2211111 222222211111 01 24688999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
+.........+...+.. .+..+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~----~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLD----DLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence 96543222233333333 345889999999986
No 259
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.27 E-value=5.4e-10 Score=92.66 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=72.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccc-cCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.....|+|+|.+|+|||||+|.|++...... ....|+ + .+....+..++++||||.. ..+..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i-~i~~~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------I-TVVTGKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------E-EEEecCCceEEEEeCCchH----------HHHHH
Confidence 3457899999999999999999987632111 011111 1 1122257788999999832 12222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCc
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~ 152 (352)
. ...+|++++|+|++..+...+...+..+... +. | +++|+||+|....
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~----p~vi~VvnK~D~~~~ 148 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GF----PRVMGVLTHLDLFKK 148 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC----CeEEEEEeccccCCc
Confidence 2 2467999999999877777777776766543 43 5 4559999998743
No 260
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.27 E-value=4.7e-11 Score=104.65 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=87.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.....++.|+|-+++|||||+|.++...+ ...+...|+..-+.....+.-..+.++||||+.+....+..+.+ +..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE-mqs 240 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE-MQI 240 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH-HHH
Confidence 44568999999999999999999986654 13344445544332222223456789999999885433322222 111
Q ss_pred HHhcccCCccEEEEEEecC--CCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
....+ .--.++||+.|++ ...|..+ ..+...++.+|... ++|+|+||+|.... +.+.+
T Consensus 241 ITALA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~--edL~~ 301 (620)
T KOG1490|consen 241 ITALA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP--EDLDQ 301 (620)
T ss_pred HHHHH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc--cccCH
Confidence 11111 1235789999998 5666544 46777888888764 89999999999877 55544
No 261
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.25 E-value=3.6e-11 Score=87.82 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=92.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
...+.++|-.++|||||+|.++.... ...-..|+....+.+.- ....+.++|.||... +.....
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~----~edmiptvGfnmrk~tk-gnvtiklwD~gGq~r-----------frsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY----LEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-----------FRSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc----hhhhcccccceeEEecc-CceEEEEEecCCCcc-----------HHHHHH
Confidence 36899999999999999999975332 11111233444444433 455778999999433 344444
Q ss_pred cccCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhcccc--cceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 99 MAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNV--FDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.++.++++++||+|+. +.++..-.. +..++.+.. ..|++++.||.|..+. -.-.+.+.+ +. +..
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~E----L~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~r-----mg-L~s 151 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSE----LHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIER-----MG-LSS 151 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHH----HHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHH-----hC-ccc
Confidence 5668999999999988 333332222 222222221 1289999999999866 222222221 11 111
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
........| ..|++...+++.+++++.+.-
T Consensus 152 itdREvcC~----siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 152 ITDREVCCF----SISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred cccceEEEE----EEEEcCCccHHHHHHHHHHHh
Confidence 111122222 235566688899888877654
No 262
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.5e-09 Score=95.86 Aligned_cols=133 Identities=22% Similarity=0.290 Sum_probs=86.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc---------------------------e--------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT---------------------------K-------------- 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t---------------------------~-------------- 56 (352)
..-+|+|.|++++||||++|+++-+...+++..+.+.. .
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 34699999999999999999998766554432221100 0
Q ss_pred eeEeEEEEeeCC------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 57 TCEMKTTVLKDG------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 57 ~~~~~~~~~~~~------~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
......+.++++ ..+.++|.||++-.. +...++......+|+++||+.+.+.++..++.++...-.
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE 259 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc
Confidence 001112234332 257799999988642 233344444568999999999988888888888777655
Q ss_pred hhcccccceEEEEEeCCCCCCcchhcHHHHhcc
Q 018636 131 LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 131 ~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
. + .+++|+.||||......+-.++.+..
T Consensus 260 ~--K---pniFIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 260 E--K---PNIFILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred c--C---CcEEEEechhhhhcccHHHHHHHHHH
Confidence 4 2 17888889999876533444544443
No 263
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.23 E-value=2.3e-10 Score=85.20 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=99.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..|+.+||.+-+|||+|++..+..... ..+..++.++.-...++..+|. .+.+|||.| .+.+...
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfa--elsdptvgvdffarlie~~pg~riklqlwdtag-----------qerfrsi 74 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFA--ELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG-----------QERFRSI 74 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCccc--ccCCCccchHHHHHHHhcCCCcEEEEEEeeccc-----------hHHHHHH
Confidence 368999999999999999999866541 1222222222211223333444 457899999 6777777
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..++|.+.-++++|+|.+++-+-+. ..++.......+.+...-+++|.+|+|+.+. ..+... .-..+...
T Consensus 75 tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq--RqVt~E-------EaEklAa~ 145 (213)
T KOG0091|consen 75 TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ--RQVTAE-------EAEKLAAS 145 (213)
T ss_pred HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh--ccccHH-------HHHHHHHh
Confidence 7888889999999999996655444 3456655555552211123455699998754 221110 12223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
++ -.++ .+|++++.++.+-+..+.+-
T Consensus 146 hg-M~FV-----ETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 146 HG-MAFV-----ETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred cC-ceEE-----EecccCCCcHHHHHHHHHHH
Confidence 33 3333 56788888888888766543
No 264
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.6e-10 Score=102.52 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=115.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccc-------------cCCCCCcceeeEeEEEEeeC--CceEEEEeCCCC
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA-------------SAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGL 79 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~ 79 (352)
|.+.-.+++||-+-..|||||...|+...-+.. -.-..++|+..+...+.+.+ ...+++|||||.
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 334557899999999999999988763221000 01234567777766666644 367899999998
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
.|... ++. .++.-++++++|+|++..........+.++.+. +- .+|.|+||+|+...+.+..+.
T Consensus 136 vDFs~-------EVs----Rslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-~L----~iIpVlNKIDlp~adpe~V~~ 199 (650)
T KOG0462|consen 136 VDFSG-------EVS----RSLAACDGALLVVDASQGVQAQTVANFYLAFEA-GL----AIIPVLNKIDLPSADPERVEN 199 (650)
T ss_pred ccccc-------eeh----ehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-CC----eEEEeeeccCCCCCCHHHHHH
Confidence 87642 222 223357999999999988877777776666553 33 688999999998764344443
Q ss_pred HhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcC
Q 018636 160 FLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (352)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~ 212 (352)
. +..++..+....+ ..||+++.++.+|++.|.+.++...
T Consensus 200 q--------~~~lF~~~~~~~i------~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 200 Q--------LFELFDIPPAEVI------YVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred H--------HHHHhcCCccceE------EEEeccCccHHHHHHHHHhhCCCCC
Confidence 3 4446655555333 4688999999999999998886543
No 265
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.21 E-value=5.3e-11 Score=86.35 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=83.3
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
+-+++...++|+++|-.++|||||++-|.+++....-++. ......+.+....+++++|.-| .+
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~-----GFn~k~v~~~g~f~LnvwDiGG-----------qr 73 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTN-----GFNTKKVEYDGTFHLNVWDIGG-----------QR 73 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccC-----CcceEEEeecCcEEEEEEecCC-----------cc
Confidence 3455577799999999999999999999998864433333 3334444442347889999998 34
Q ss_pred HHHHHHhcccCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
.++.+...+|.++|.++||+|.++ ++..-.....+++...--..+ |++|..||-|++.. ...++
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~v--pvlIfankQdllta--a~~ee 139 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEV--PVLIFANKQDLLTA--AKVEE 139 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhcc--ceeehhhhhHHHhh--cchHH
Confidence 455666778889999999999662 121111222222222111122 78888899988866 44443
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.7e-10 Score=97.42 Aligned_cols=162 Identities=17% Similarity=0.220 Sum_probs=101.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhh---CC------------------Ccccc--------cCCCCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSIL---GR------------------KAFKA--------SAGSSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~---g~------------------~~~~~--------~~~~~~~t~~~~~~~~~~~~ 67 (352)
....+++++|+..+|||||+-.|+ |. ..|.- .....++|.......++. +
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~ 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-D 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-C
Confidence 345899999999999999997764 21 11000 011133455555555555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
...++|+|+|| .+++..-+......+|+.++|++++.. ..+..+..+-+ ...+|-. .+
T Consensus 84 k~~~tIiDaPG-----------HrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~L-a~tlGi~---~l 148 (428)
T COG5256 84 KYNFTIIDAPG-----------HRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFL-ARTLGIK---QL 148 (428)
T ss_pred CceEEEeeCCc-----------hHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHH-HHhcCCc---eE
Confidence 77899999999 233444444455678999999999844 44444554443 3445643 79
Q ss_pred EEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHH
Q 018636 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (352)
Q Consensus 141 ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L 200 (352)
|+++||+|..+-+...+++.... +..++..++-..-- -.-+++|+-.+.++.+.
T Consensus 149 IVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~~~~-v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 149 IVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYNPKD-VPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCCccC-CeEEecccccCCccccc
Confidence 99999999986555777777776 77777777643100 00125566666665553
No 267
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=7.4e-10 Score=81.52 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE--EEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+++++|+.|+|||.|+........ . ...+.|....... +.+ .+. .+.||||.| .+.+..
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kf-k---DdssHTiGveFgSrIinV-GgK~vKLQIWDTAG-----------QErFRS 73 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKF-K---DDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAG-----------QERFRS 73 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhh-c---ccccceeeeeecceeeee-cCcEEEEEEeeccc-----------HHHHHH
Confidence 5899999999999999988774432 2 1222333332222 222 333 567999999 677787
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
....+|.++.+.++|.|++++-+-... .||.-+..+....+ .++++.||.|+...
T Consensus 74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChh
Confidence 788889999999999999855544443 35555555544422 34444599998755
No 268
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.19 E-value=7.7e-11 Score=92.43 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=63.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...|+|+|++|+|||+|+..|..... ..++|.......+.. ..+..+.+||+||..... ..+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~------~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~ 69 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT------VPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDE 69 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---------B---SSEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc------CCeeccccCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHh
Confidence 36899999999999999999986533 111221111111111 246688999999966532 222222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhc----ccccceEEEEEeCCCCCCc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~ilv~nk~D~~~~ 152 (352)
+. ....+-+|+||+|.+ .+...-....+.+-.++. .....|++|+.||.|+...
T Consensus 70 ~~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 70 LK-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HH-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hh-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 11 234688999999987 332222333333322221 1112389999999999865
No 269
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.6e-10 Score=87.12 Aligned_cols=167 Identities=15% Similarity=0.113 Sum_probs=105.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc--cc-ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA--FK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~--~~-~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....|+|+|.-++|||||+-.+-.... +. ..++....|+.-....+.+ ++..+.+||.-| .+.+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgG-----------Qe~lr 83 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGG-----------QESLR 83 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCC-----------hHHHH
Confidence 347899999999999999977632111 00 1133334455555666666 578889999988 34455
Q ss_pred HHHhcccCCccEEEEEEecCC--CCCHHHHHHHHHH--HHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRL--PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~--~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (352)
+....+|..+|+++|++|+++ ++.......-+.+ ..+.|. |++++.||-|..+. ....+.-.. +.
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~----p~L~lankqd~q~~--~~~~El~~~-----~~ 152 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGA----PVLVLANKQDLQNA--MEAAELDGV-----FG 152 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCC----chhhhcchhhhhhh--hhHHHHHHH-----hh
Confidence 555567788999999999982 3322211111111 222233 99999999998766 444432221 22
Q ss_pred HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
. .+..+.+-.. ..++|+.++.++.+=+.++...++.+
T Consensus 153 ~-~e~~~~rd~~---~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 153 L-AELIPRRDNP---FQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred h-hhhcCCccCc---cccchhhhcccHHHHHHHHHHHHhhc
Confidence 1 3333333333 34668999999999999988888765
No 270
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.16 E-value=1.9e-10 Score=96.99 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=56.8
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC----------------ceEEEEeCCCCCCCCCC
Q 018636 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~lvDtpG~~~~~~~ 85 (352)
|+|||.+|+|||||+|+|+|... ..... ..+|.......+.+.+. ..+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~-pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANY-PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccc-cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 68999999999999999999875 22111 22333433333333222 14889999999865443
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
...+...+... ...+|++++|+++.
T Consensus 79 ~~glg~~fL~~----i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSH----IREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHH----HHhCCEEEEEEeCc
Confidence 34444444433 35789999999864
No 271
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.16 E-value=3.3e-10 Score=83.86 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee--eEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
.+|+|+|..=+|||||+=...... |...... |.. .....+.+. ..-.+.||||.| .+.+...
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHls---TlQASF~~kk~n~ed~ra~L~IWDTAG-----------QErfHAL 78 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENK-FNCKHLS---TLQASFQNKKVNVEDCRADLHIWDTAG-----------QERFHAL 78 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhh-cchhhHH---HHHHHHhhcccccccceeeeeeeeccc-----------hHhhhcc
Confidence 799999999999999986554222 2111100 110 011111111 133567999999 4444444
Q ss_pred HhcccCCccEEEEEEecCCCCCH-HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
-..+|.+.++.++|+|++++-+- .-+.|+..++.++|..+ .++||.||+|+... ..+.. ++ .....+.
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEee--R~Vt~--qe-----Ae~YAes 147 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEE--RQVTR--QE-----AEAYAES 147 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHh--hhhhH--HH-----HHHHHHh
Confidence 45678899999999999954442 33467888888899876 78888999998754 22111 00 1122344
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..|+ .+||+++.++.+|++.+...+
T Consensus 148 vGA~y~------eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 148 VGALYM------ETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred hchhhe------ecccccccCHHHHHHHHHHHH
Confidence 455554 468888999999998776544
No 272
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=4e-10 Score=107.64 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=74.1
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee--EeEEEEeeCCc--eEEEEeCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDGQ--VVNVIDTPGLFD 81 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~~~--~~~lvDtpG~~~ 81 (352)
+.++..+... .+.+|+|+|+||||||||+++|+|... +..|.++... .+.++. +.. .+..-.|+ +..
T Consensus 327 il~~isl~i~--~Ge~~~l~G~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~~igy~~--Q~~~~~l~~~~~~-~~~ 397 (638)
T PRK10636 327 ILDSIKLNLV--PGSRIGLLGRNGAGKSTLIKLLAGELA----PVSGEIGLAKGIKLGYFA--QHQLEFLRADESP-LQH 397 (638)
T ss_pred eeccceEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEECCCEEEEEec--CcchhhCCccchH-HHH
Confidence 4455555544 458999999999999999999999876 5556554321 122211 111 00000000 000
Q ss_pred C-CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcH
Q 018636 82 L-SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTL 157 (352)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l 157 (352)
. ..........+..++... +...-..-..+ ..+|++++.++.++..+.... +++|+ +|++|.... ..+
T Consensus 398 ~~~~~~~~~~~~~~~~L~~~--~l~~~~~~~~~-~~LSgGekqRl~La~~l~~~p---~lLlLDEPt~~LD~~~~--~~l 469 (638)
T PRK10636 398 LARLAPQELEQKLRDYLGGF--GFQGDKVTEET-RRFSGGEKARLVLALIVWQRP---NLLLLDEPTNHLDLDMR--QAL 469 (638)
T ss_pred HHHhCchhhHHHHHHHHHHc--CCChhHhcCch-hhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHH
Confidence 0 000000011112222111 11000000122 389999999999999887653 55555 699998766 667
Q ss_pred HHHhcc
Q 018636 158 EDFLGH 163 (352)
Q Consensus 158 ~~~l~~ 163 (352)
.+++..
T Consensus 470 ~~~L~~ 475 (638)
T PRK10636 470 TEALID 475 (638)
T ss_pred HHHHHH
Confidence 766654
No 273
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=8.1e-10 Score=96.12 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=116.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCccc-ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.|+..|+--.|||||+.+++|...-. ......+.|.+..+++... .+..+.+||.||+.+ +.+.+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 57889999999999999999875411 1123445677888888777 455889999999543 4444444
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
...+.|..++|+++++.+.......+..+.. +|-. +.++|+||+|..+. ..+++.+++ ++....
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi~---~giivltk~D~~d~--~r~e~~i~~--------Il~~l~-- 133 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGIK---NGIIVLTKADRVDE--ARIEQKIKQ--------ILADLS-- 133 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCCC---ceEEEEeccccccH--HHHHHHHHH--------HHhhcc--
Confidence 5568899999999987888888777776654 5653 78999999999876 666655544 333322
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+.-.+....|+.++.++.+|.+.+.++.
T Consensus 134 -l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -cccccccccccccCCCHHHHHHHHHHhh
Confidence 2223446778899999999999999988
No 274
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.6e-09 Score=77.55 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+.+|-.++||||++-.|.-... .....|+...+..+.+ .+-.+.++|.-| ...++..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGG-----------qd~iRpl 77 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGG-----------QDKIRPL 77 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccC-----------chhhhHH
Confidence 3468999999999999999977743222 1222355566666666 677889999998 3446666
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccc--eEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD--YMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~ 173 (352)
...+|.+..+++||+|..++ +.-+..+-++- ..++..-+. +++|+.||-|+... ....+.+++. +-
T Consensus 78 WrhYy~gtqglIFV~Dsa~~-dr~eeAr~ELh-~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le---------Le 146 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADR-DRIEEARNELH-RIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE---------LE 146 (180)
T ss_pred HHhhccCCceEEEEEeccch-hhHHHHHHHHH-HHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc---------cc
Confidence 77788999999999998733 33333333322 222322111 66667799999876 1123333332 11
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..-+.++++ .+.++.++.++.+=+.++...
T Consensus 147 ~~r~~~W~v----qp~~a~~gdgL~eglswlsnn 176 (180)
T KOG0071|consen 147 RIRDRNWYV----QPSCALSGDGLKEGLSWLSNN 176 (180)
T ss_pred cccCCccEe----eccccccchhHHHHHHHHHhh
Confidence 111333333 345666677777766666544
No 275
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.15 E-value=2.4e-10 Score=95.05 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=99.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
...|++||-+||||||||+.|++....+. ..-..|.+........+.|..+.+.||.||...- ...+...|...+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~--drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~ATLe 253 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPN--DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQATLE 253 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCcc--chhheeccchhhhccCCCCcEEEEeechhhhhhC--cHHHHHHHHHHHH
Confidence 37999999999999999999996654221 1222344555555566678999999999997632 1222333333222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhccc---ccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKN---VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~---~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
. ...+|+++.|+|++++.-...+. .+..+.. +|-. ...+++=|-||+|.... ++..
T Consensus 254 e-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~~-------~~e~----------- 313 (410)
T KOG0410|consen 254 E-VAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEED-------EVEE----------- 313 (410)
T ss_pred H-HhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhccccccccc-------cCcc-----------
Confidence 1 23679999999999555444444 4444443 3431 12244455677776544 1111
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.-+.....|+.++.++.++++.++..+.
T Consensus 314 -------E~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 -------EKNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred -------ccCCccccccccCccHHHHHHHHHHHhh
Confidence 0112346688889999999998877654
No 276
>PTZ00258 GTP-binding protein; Provisional
Probab=99.14 E-value=3.4e-10 Score=99.84 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=59.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC----------------CceEEEEeCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLF 80 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~lvDtpG~~ 80 (352)
....+|+|||.+|+|||||+|+|++... ..... ..+|.......+.+.+ ...+.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~-pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENF-PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCC-CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 4457999999999999999999988764 22111 1223343343333322 2258899999998
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
........+...+.. ....+|++++|+++.
T Consensus 97 ~ga~~g~gLg~~fL~----~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLS----HIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHH----HHHHCCEEEEEEeCC
Confidence 654333334444433 335789999999974
No 277
>PTZ00416 elongation factor 2; Provisional
Probab=99.14 E-value=3e-10 Score=111.12 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCC--------------CcceeeEeEEEEee---------CCceEEE
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS--------------GVTKTCEMKTTVLK---------DGQVVNV 73 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~--------------~~t~~~~~~~~~~~---------~~~~~~l 73 (352)
+.-.+|+|+|+.++|||||++.|+...........+ ++|.......+.+. .+..+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 445799999999999999999998643211111111 12222222223331 1456899
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 74 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
+||||..+ +...+..+...+|++++|+|+...+...+...++.+... +. |+++++||+|..
T Consensus 97 iDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~~----p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-RI----RPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-CC----CEEEEEEChhhh
Confidence 99999655 222233344678999999999877888888777766653 32 899999999987
No 278
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.14 E-value=4.5e-10 Score=97.84 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeCC----------------ceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~----------------~~~~lvDtpG~~~~ 82 (352)
.+|+|||.+|+|||||+|+|+|... .. ...+ .|.......+.+.+. ..+.++||||+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v--~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EA--ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-ee--cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 6899999999999999999999873 22 2222 233333333333221 25889999999864
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
......+...+.. ....+|++++|+++.
T Consensus 80 a~~g~glg~~fL~----~i~~aD~li~VVd~f 107 (364)
T PRK09601 80 ASKGEGLGNQFLA----NIREVDAIVHVVRCF 107 (364)
T ss_pred CChHHHHHHHHHH----HHHhCCEEEEEEeCC
Confidence 4333334444433 345889999999974
No 279
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.13 E-value=7.8e-10 Score=90.87 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
||+|+|+.|+||||..+.|.+...... ...-+.|.......+.......+.+||.||......... .......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~------~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYF------NSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH------TCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccc------cccHHHH
Confidence 689999999999999999997754111 222234555555555443566899999999876432210 0001112
Q ss_pred cCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 101 KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 101 ~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+.++++++||+|+. ..+...-......+..+......-++.+++.|+|....
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 36889999999998 44433333333333332221222278899999999865
No 280
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.13 E-value=3.6e-10 Score=108.17 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=71.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEeeCCce-----EEEEeCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDGQV-----VNVIDTPG 78 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~-----~~lvDtpG 78 (352)
+.++..+... .+.+|+|+|+||+|||||+++|+|... +..|.+..... +.++. +... .++.|...
T Consensus 334 il~~vsl~i~--~Ge~~~l~G~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~~i~y~~--q~~~~l~~~~tv~e~l~ 405 (635)
T PRK11147 334 LVKDFSAQVQ--RGDKIALIGPNGCGKTTLLKLMLGQLQ----ADSGRIHCGTKLEVAYFD--QHRAELDPEKTVMDNLA 405 (635)
T ss_pred EEcCcEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCCcEEEECCCcEEEEEe--CcccccCCCCCHHHHHH
Confidence 3444444443 447999999999999999999999865 55555443211 11111 1100 01111100
Q ss_pred CCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchh
Q 018636 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEK 155 (352)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~ 155 (352)
+.............+...+... +...-..-..+ ..+|++++.++.++..+.... +++|+ +|++|.... .
T Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~-~~LSgGekqRl~la~al~~~p---~lLlLDEPt~~LD~~~~--~ 477 (635)
T PRK11147 406 EGKQEVMVNGRPRHVLGYLQDF--LFHPKRAMTPV-KALSGGERNRLLLARLFLKPS---NLLILDEPTNDLDVETL--E 477 (635)
T ss_pred hhcccccccchHHHHHHHHHhc--CCCHHHHhChh-hhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--H
Confidence 0000000000011111111110 00000000112 379999999999999887653 45555 699997755 5
Q ss_pred cHHHHhcc
Q 018636 156 TLEDFLGH 163 (352)
Q Consensus 156 ~l~~~l~~ 163 (352)
.+.+.+..
T Consensus 478 ~l~~~l~~ 485 (635)
T PRK11147 478 LLEELLDS 485 (635)
T ss_pred HHHHHHHh
Confidence 55555543
No 281
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.09 E-value=2.8e-09 Score=85.92 Aligned_cols=160 Identities=23% Similarity=0.215 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+++|..|+|||+|....++... ......|....+.. ..+ ++ ..+.|+||+|..... .
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f----~~~y~ptied~y~k~~~v-~~~~~~l~ilDt~g~~~~~-----------~ 66 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF----VEDYDPTIEDSYRKELTV-DGEVCMLEILDTAGQEEFS-----------A 66 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc----ccccCCCccccceEEEEE-CCEEEEEEEEcCCCcccCh-----------H
Confidence 37999999999999999988776654 22223333222222 223 33 345689999943321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+....|++++|++++++-|-.+.. +...+....+. ...|+++|.||+|+...- ..-.+. -..+..
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R-~V~~ee--------g~~la~ 136 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERER-QVSEEE--------GKALAR 136 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhcc-ccCHHH--------HHHHHH
Confidence 1222335679999999999665544433 33334332222 224999999999997530 111111 122233
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.++..++ .+||+.+.++++++..+...+..
T Consensus 137 ~~~~~f~------E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 137 SWGCAFI------ETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred hcCCcEE------EeeccCCcCHHHHHHHHHHHHHh
Confidence 3333433 45677778888888877776544
No 282
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.09 E-value=6.6e-10 Score=108.94 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=77.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC--------------CCcceeeEeEEEEee---------------C
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--------------SGVTKTCEMKTTVLK---------------D 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~--------------~~~t~~~~~~~~~~~---------------~ 67 (352)
..-++|+|+|+.++|||||++.|+........... .+.|.......+.+. .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 44579999999999999999998743311000000 112222222233331 2
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
+..++++||||..+ +......+...+|+.++|+|+...+.......++.+... +. |+++++||+
T Consensus 97 ~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-~~----p~i~~iNK~ 160 (843)
T PLN00116 97 EYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-RI----RPVLTVNKM 160 (843)
T ss_pred ceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-CC----CEEEEEECC
Confidence 56789999999544 222233334578999999999888887777777766543 32 899999999
Q ss_pred CCC
Q 018636 148 DDL 150 (352)
Q Consensus 148 D~~ 150 (352)
|..
T Consensus 161 D~~ 163 (843)
T PLN00116 161 DRC 163 (843)
T ss_pred ccc
Confidence 987
No 283
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.08 E-value=3.5e-10 Score=101.20 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..||+|||.-|+||||||-+|+.....+..|..-. ++.. .-..+.....+++||..-.+ ....+.+++
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP----advtPe~vpt~ivD~ss~~~---~~~~l~~Ei---- 77 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP----ADVTPENVPTSIVDTSSDSD---DRLCLRKEI---- 77 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC----CccCcCcCceEEEecccccc---hhHHHHHHH----
Confidence 48999999999999999999998765333232211 1111 11122445578999984222 112223333
Q ss_pred hcccCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..+|++.++...+ ..+..-...||-++...+|.....|+|+|.||+|........++.. ...++..
T Consensus 78 ----rkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~--------~~pim~~ 145 (625)
T KOG1707|consen 78 ----RKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVN--------TLPIMIA 145 (625)
T ss_pred ----hhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHH--------HHHHHHH
Confidence 4678888888776 2344556678889999988777779999999999876521222321 1112221
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|..++..+.+||++..++.+++..-.+.+-.
T Consensus 146 ----f~EiEtciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 146 ----FAEIETCIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred ----hHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence 2223344566777777778877766665544
No 284
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.08 E-value=3.2e-10 Score=109.46 Aligned_cols=118 Identities=18% Similarity=0.273 Sum_probs=73.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC--------------cccccCCCCCcceeeEeEE----EEeeCCceEEEEeCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK--------------AFKASAGSSGVTKTCEMKT----TVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~--------------~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~lvDtpG~ 79 (352)
.-++|+++|+.|+|||||++.|+... .+.......+.|....... +.+ ++..+.++||||.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCc
Confidence 44799999999999999999886321 0000000012232222111 223 5678899999998
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+.. ..+. .++..+|++++|+|+...+.......+..+... +. |.++++||+|....
T Consensus 97 ~~f~-------~~~~----~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~~----p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFG-------GDVT----RAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-NV----KPVLFINKVDRLIN 153 (720)
T ss_pred cccH-------HHHH----HHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-CC----CEEEEEEChhcccc
Confidence 7632 2222 233578999999998866666666665554332 22 67899999998643
No 285
>PRK13768 GTPase; Provisional
Probab=99.08 E-value=7.9e-10 Score=93.22 Aligned_cols=133 Identities=18% Similarity=0.110 Sum_probs=72.9
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..+.++||||..+.... ......+.+.+.... .+++++|+|+....+..+.....++..........|+++|+||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 35789999997653321 222344444444322 789999999974455555443333321110011239999999999
Q ss_pred CCCcchhcHHHHhcccCC-------------------hhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 149 DLEDHEKTLEDFLGHECP-------------------KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+. ..++........ ..+-..+...+.. ....+.|+.++.++.+|++.|.+.+.
T Consensus 174 ~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~----~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 174 LLSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLP----VRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hcCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCC----CcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9866 333332221000 0011112222321 12235677788999999999988874
Q ss_pred h
Q 018636 210 Q 210 (352)
Q Consensus 210 ~ 210 (352)
.
T Consensus 248 ~ 248 (253)
T PRK13768 248 G 248 (253)
T ss_pred C
Confidence 3
No 286
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.07 E-value=9.9e-10 Score=86.58 Aligned_cols=116 Identities=22% Similarity=0.177 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCCce--EEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.++++|||..++|||+|+-..+-... +.....|+...+. .+.+.++.. +.+|||.|..+- .+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~f----p~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------Dr 68 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAF----PEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DR 68 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcC----cccccCeEEccceEEEEecCCCEEEEeeeecCCCccc-----------cc
Confidence 37999999999999999988875433 3344444433222 234422554 578999996653 11
Q ss_pred HHhcccCCccEEEEEEecCCCCCHH--HHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.-..+|+..|+|++|+++.++.+-. ...++..++..+.. + |+|+|.+|.|+..+
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~-v--piiLVGtk~DLr~d 124 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN-V--PIILVGTKADLRDD 124 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC-C--CEEEEeehHHhhhC
Confidence 1134889999999999988555544 34577777776643 3 99999999999854
No 287
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.06 E-value=4.4e-10 Score=88.05 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
...+|+++|.+|+|||||+|+|.|......+..++. |+.... +..+..++++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~-T~~~~~----~~~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE-TKVWQY----ITLMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe-eEeEEE----EEcCCCEEEEECcCC
Confidence 347899999999999999999999876555555443 333222 223455889999995
No 288
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.06 E-value=3e-09 Score=88.01 Aligned_cols=107 Identities=21% Similarity=0.145 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC-CcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
-..|+|+|++++|||||+|.|+|. ..|..+.....+|.....+...+. .+..+.++||||+++...........+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 368999999999999999999998 366665555556665555444332 25788999999999876543111111111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
+.. --.++++|..+.. ....+...+..+.+
T Consensus 87 -l~~--llss~~i~n~~~~--~~~~~~~~l~~~~~ 116 (224)
T cd01851 87 -LAT--LLSSVLIYNSWET--ILGDDLAALMGLLK 116 (224)
T ss_pred -HHH--HHhCEEEEeccCc--ccHHHHHHHHHHHH
Confidence 111 1347788877653 44555555555443
No 289
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.3e-09 Score=90.66 Aligned_cols=167 Identities=13% Similarity=0.174 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCccc-ccCCCCCcceeeEeEE--------------EEe-----------eCCceEE
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKT--------------TVL-----------KDGQVVN 72 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~--------------~~~-----------~~~~~~~ 72 (352)
..+|+++|+...|||||.++|+|--... +.....++|....+.. +.. .--+.+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 4899999999999999999999853211 0011111222111110 000 0024678
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 73 lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
++|.|| .+.+...+.+...-.|+.++|+.++++.. ...+..|..+ ...|-. +++++=||+|+.+
T Consensus 90 fVDaPG-----------He~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigik---~iiIvQNKIDlV~ 154 (415)
T COG5257 90 FVDAPG-----------HETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGIK---NIIIVQNKIDLVS 154 (415)
T ss_pred EeeCCc-----------hHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhccc---eEEEEecccceec
Confidence 999999 33333333333334588999999884332 3333333322 234433 8999999999997
Q ss_pred cchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. +...+. ++++.+...+.+..-.+..+.||..+.+++.|++.|.+.++.
T Consensus 155 ~--E~AlE~--------y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 155 R--ERALEN--------YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred H--HHHHHH--------HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 6 333222 333333334444444466789999999999999999998865
No 290
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.03 E-value=6.7e-10 Score=91.83 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=79.5
Q ss_pred CCCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-------------EeEEEEe--eC
Q 018636 3 ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-------------EMKTTVL--KD 67 (352)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-------------~~~~~~~--~~ 67 (352)
++.+.++.++..+. +..++|+|+||||||||+++|+|-.. +..|.+.... ...++.. ..
T Consensus 14 ~~~il~~ls~~i~~--G~i~~iiGpNG~GKSTLLk~l~g~l~----p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~ 87 (258)
T COG1120 14 GKPILDDLSFSIPK--GEITGILGPNGSGKSTLLKCLAGLLK----PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA 87 (258)
T ss_pred CeeEEecceEEecC--CcEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC
Confidence 34455666666665 48999999999999999999999766 4444433321 1111111 11
Q ss_pred CceEEEEeCCCCCCCC-------CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceE
Q 018636 68 GQVVNVIDTPGLFDLS-------AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
...+++.|.--++... .+..+ .+.+..++. ..+..-+....-+.+|++++.++...+.+.... ++
T Consensus 88 ~~~~tV~d~V~~GR~p~~~~~~~~~~~D-~~~v~~aL~----~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~---~i 159 (258)
T COG1120 88 PFGLTVYELVLLGRYPHLGLFGRPSKED-EEIVEEALE----LLGLEHLADRPVDELSGGERQRVLIARALAQET---PI 159 (258)
T ss_pred CCCcEEeehHhhcCCcccccccCCCHhH-HHHHHHHHH----HhCcHHHhcCcccccChhHHHHHHHHHHHhcCC---CE
Confidence 3345666654332111 11111 111222221 111111111112488899999988888877663 56
Q ss_pred EEE---EeCCCCCCcchhcHHHHhcc
Q 018636 141 IVV---FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 141 ilv---~nk~D~~~~~~~~l~~~l~~ 163 (352)
+++ +|++|.... ..+.+.+.+
T Consensus 160 LLLDEPTs~LDi~~Q--~evl~ll~~ 183 (258)
T COG1120 160 LLLDEPTSHLDIAHQ--IEVLELLRD 183 (258)
T ss_pred EEeCCCccccCHHHH--HHHHHHHHH
Confidence 665 699998754 444444443
No 291
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.3e-08 Score=73.96 Aligned_cols=118 Identities=15% Similarity=0.182 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
.+..++|.-|+|||.|+.-.+.+..+..-| .++.+......+++. +...+.+|||.| .+.+.....
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcp--htigvefgtriievsgqkiklqiwdtag-----------qerfravtr 78 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEVSGQKIKLQIWDTAG-----------QERFRAVTR 78 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCC--cccceecceeEEEecCcEEEEEEeeccc-----------HHHHHHHHH
Confidence 478899999999999999887655422112 222222222223331 234668999999 566777777
Q ss_pred cccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
++|.++.+.+.|.|++.+-+-.. ..+|.-.+.+..+.. -++++.||.|+...
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt--~i~lignkadle~q 131 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIFLIGNKADLESQ 131 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCce--EEEEecchhhhhhc
Confidence 78899999999999984433322 345555555544321 34455699998644
No 292
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.00 E-value=5.8e-09 Score=88.00 Aligned_cols=156 Identities=13% Similarity=0.153 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc--cc---------c---c-----------------CCCCCcceeeEeEEEEee
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA--FK---------A---S-----------------AGSSGVTKTCEMKTTVLK 66 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~--~~---------~---~-----------------~~~~~~t~~~~~~~~~~~ 66 (352)
+-+|++-+|...-||||||-.|+-... +. + + .-..++|.+..+.++..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence 448999999999999999987752210 00 0 0 11134666666666655
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeC
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk 146 (352)
..+.+.+.|||| .+++.+-+......+|+.++++|+...+-...++ -..+..++|-. ++++.+||
T Consensus 84 ~KRkFIiADTPG-----------HeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIr---hvvvAVNK 148 (431)
T COG2895 84 EKRKFIIADTPG-----------HEQYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIR---HVVVAVNK 148 (431)
T ss_pred ccceEEEecCCc-----------HHHHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCc---EEEEEEee
Confidence 788999999999 5555555555556789999999997555444443 34555566654 88999999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHH
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~ 197 (352)
+|+.+-+.+.++++... +..+....+..... .++.||..+.++
T Consensus 149 mDLvdy~e~~F~~I~~d-----y~~fa~~L~~~~~~---~IPiSAl~GDNV 191 (431)
T COG2895 149 MDLVDYSEEVFEAIVAD-----YLAFAAQLGLKDVR---FIPISALLGDNV 191 (431)
T ss_pred ecccccCHHHHHHHHHH-----HHHHHHHcCCCcce---EEechhccCCcc
Confidence 99987766778877776 66677766644322 224455444443
No 293
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.99 E-value=5.9e-09 Score=83.80 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=65.1
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
+-.++|....+ ..-||++||.+.+|||||+..|++... .......|+ .|-...+.+ ++..+.++|.||+....
T Consensus 50 ~kg~GFeV~Ks--GdaRValIGfPSVGKStlLs~iT~T~S---eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 50 GKGEGFEVLKS--GDARVALIGFPSVGKSTLLSKITSTHS---EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGA 123 (364)
T ss_pred CCCCCeeeecc--CCeEEEEecCCCccHHHHHHHhhcchh---hhhceeeeEEEeecceEEe-cCceEEEecCccccccc
Confidence 34455544443 448999999999999999999987543 223333444 343333344 89999999999998754
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
.....-++++ ......+|.++.|+|++
T Consensus 124 sqgkGRGRQv----iavArtaDlilMvLDat 150 (364)
T KOG1486|consen 124 SQGKGRGRQV----IAVARTADLILMVLDAT 150 (364)
T ss_pred ccCCCCCceE----EEEeecccEEEEEecCC
Confidence 3322212222 22335679999999987
No 294
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=6.5e-09 Score=99.46 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=36.2
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
|+..+.++.++... .+.+|+|+|+||||||||+++|+|... +..|.++.
T Consensus 12 g~~~~l~~vs~~i~--~Ge~v~LvG~NGsGKSTLLkiL~G~~~----pd~G~I~~ 60 (638)
T PRK10636 12 GVRVLLDNATATIN--PGQKVGLVGKNGCGKSTLLALLKNEIS----ADGGSYTF 60 (638)
T ss_pred CCceeecCcEEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEe
Confidence 34445566666654 348999999999999999999999765 55555443
No 295
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.97 E-value=4.4e-10 Score=86.33 Aligned_cols=62 Identities=34% Similarity=0.410 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCccccc-----CCCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----~~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~~ 85 (352)
..++|+|++|||||||+|.|++......+ ...|..|+ ....+. . .....|||||||.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~--l--~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP--L--PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE--E--TTSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe--c--CCCcEEEECCCCCccccc
Confidence 68999999999999999999998543322 12333333 223222 2 234579999999876543
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.96 E-value=2.7e-08 Score=86.28 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=58.6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
+..+.|+||+|...... .+ ...+|.++++.... ++.+...+. ..+... +.++|+||+
T Consensus 126 g~D~viidT~G~~~~e~-------~i-------~~~aD~i~vv~~~~---~~~el~~~~--~~l~~~----~~ivv~NK~ 182 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV-------DI-------ANMADTFVVVTIPG---TGDDLQGIK--AGLMEI----ADIYVVNKA 182 (300)
T ss_pred CCCEEEEeCCCCchhhh-------HH-------HHhhceEEEEecCC---ccHHHHHHH--HHHhhh----ccEEEEEcc
Confidence 56778999999764211 11 12456677664322 223333222 112222 789999999
Q ss_pred CCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEE-cCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|.... ......... +..-+.....+...+ ....++|+.++.++.+|++.+.+.+..
T Consensus 183 Dl~~~--~~~~~~~~~-----~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~ 239 (300)
T TIGR00750 183 DGEGA--TNVTIARLM-----LALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTF 239 (300)
T ss_pred cccch--hHHHHHHHH-----HHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 98865 221110000 100011101110001 123467888999999999999887543
No 297
>PRK12740 elongation factor G; Reviewed
Probab=98.96 E-value=8.9e-09 Score=99.41 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=72.2
Q ss_pred EcCCCCCHHHHHHHhhCCCcc---cccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 018636 25 LGRTGNGKSATGNSILGRKAF---KASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (352)
Q Consensus 25 vG~~g~GKSTlin~l~g~~~~---~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~ 88 (352)
+|+.|+|||||++.|+..... ..... ..++|.......+.+ .+..+++|||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 699999999999999533211 00000 122344444445555 7889999999996541
Q ss_pred HHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
...... ++..+|++++|+|++..........+..+... +. |+++++||+|....
T Consensus 74 -~~~~~~----~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~~----p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEVER----ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-GV----PRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHHH----HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 122222 33478999999999866666666666655442 32 89999999998754
No 298
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.95 E-value=1.8e-09 Score=85.20 Aligned_cols=56 Identities=30% Similarity=0.367 Sum_probs=40.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
..+|+|+|.+|+|||||+|+|+|......+..+| .|...+... -+..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg-~T~~~~~~~----~~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPG-VTKSMQEVH----LDKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCC-eEcceEEEE----eCCCEEEEECcCC
Confidence 3699999999999999999999987755555443 233332222 2356889999995
No 299
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=3.5e-08 Score=84.86 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeC-----------------CceEEEEeCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKD-----------------GQVVNVIDTPGLF 80 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~-----------------~~~~~lvDtpG~~ 80 (352)
..+++|||.+|+|||||+|+|+.... . ....+ +|.......+.+++ -..+.++|.+|+.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a-~--~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV 78 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGA-E--IANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLV 78 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCc-c--ccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccC
Confidence 37899999999999999999997663 1 12222 33333332222211 1246799999997
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEec
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV 113 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 113 (352)
......+.++..+..-+. .+|+++.|+++
T Consensus 79 ~GAs~GeGLGNkFL~~IR----evdaI~hVVr~ 107 (372)
T COG0012 79 KGASKGEGLGNKFLDNIR----EVDAIIHVVRC 107 (372)
T ss_pred CCcccCCCcchHHHHhhh----hcCeEEEEEEe
Confidence 765555555666655443 67888888875
No 300
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=5.9e-09 Score=88.37 Aligned_cols=132 Identities=17% Similarity=0.291 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee------CC-----------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK------DG----------------------- 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~------~~----------------------- 68 (352)
...-|.++|....|||||||.|+..+.......+. .|+..-+. +.+. .|
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpE-PTtd~Fi~-vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPE-PTTDRFIA-VMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCC-CCcceeEE-EEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 34689999999999999999999876521111111 12221111 1000 00
Q ss_pred ------------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCC--HHHHHHHHHHHHhhcc
Q 018636 69 ------------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS--QEEETAVHRLPNLFGK 134 (352)
Q Consensus 69 ------------~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~--~~~~~~l~~~~~~~~~ 134 (352)
..++||||||+.......-.-.-.+...+......+|.|++++|+. .++ .+-.+.+..+ -|.
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h-KLDIsdEf~~vi~aL---kG~ 210 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFKRVIDAL---KGH 210 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh-hccccHHHHHHHHHh---hCC
Confidence 2478999999987543322212233444444447899999999998 554 4444444443 344
Q ss_pred cccceEEEEEeCCCCCCcchhcHHH
Q 018636 135 NVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 135 ~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
+- .+-||+||.|..+. +.|..
T Consensus 211 Ed--kiRVVLNKADqVdt--qqLmR 231 (532)
T KOG1954|consen 211 ED--KIRVVLNKADQVDT--QQLMR 231 (532)
T ss_pred cc--eeEEEeccccccCH--HHHHH
Confidence 32 68899999999876 55544
No 301
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.94 E-value=1e-08 Score=83.36 Aligned_cols=47 Identities=28% Similarity=0.215 Sum_probs=36.6
Q ss_pred CCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 4 RVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
..+.+++.+.... +..|+|+|++|||||||+|+|+|-.. ++.|.+..
T Consensus 16 ~~vl~~i~L~v~~--GEfvsilGpSGcGKSTLLriiAGL~~----p~~G~V~~ 62 (248)
T COG1116 16 VEVLEDINLSVEK--GEFVAILGPSGCGKSTLLRLIAGLEK----PTSGEVLL 62 (248)
T ss_pred eEEeccceeEECC--CCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 3456666666654 48999999999999999999999887 55555444
No 302
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.94 E-value=1.1e-08 Score=100.67 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=73.2
Q ss_pred CCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC-----------------ceEEEEeCCCCCCCCCCcHHHHHH
Q 018636 30 NGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 30 ~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
++|||||..|.+..+ ..--.|++|.....+.+.+... ..+.+|||||...
T Consensus 472 ~~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~----------- 538 (1049)
T PRK14845 472 VHNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA----------- 538 (1049)
T ss_pred cccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-----------
Confidence 349999999998887 3344677787776666554211 1378999999432
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
+.......+..+|++++|+|+++.+.......+..+... +. |+++++||+|+..
T Consensus 539 F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-~i----PiIVViNKiDL~~ 592 (1049)
T PRK14845 539 FTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-KT----PFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-CC----CEEEEEECCCCcc
Confidence 222222344678999999999877777777777766653 32 8999999999863
No 303
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.93 E-value=3.8e-09 Score=102.41 Aligned_cols=118 Identities=19% Similarity=0.305 Sum_probs=75.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC--------------CCcceeeEeEEEEe--e-CCceEEEEeCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--------------SGVTKTCEMKTTVL--K-DGQVVNVIDTPGLF 80 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~--------------~~~t~~~~~~~~~~--~-~~~~~~lvDtpG~~ 80 (352)
.-++|+++|+.++|||||+.+|+........... .++|.......+.+ . .+..++++||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4468999999999999999998643210000000 11222222222222 1 35678999999987
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
+. ...+.. +...+|++++|+|+...+.......+..+... +. |.++++||+|...
T Consensus 99 df-------~~~~~~----~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DF-------GGDVTR----AMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----KPVLFINKVDRLI 153 (731)
T ss_pred Ch-------HHHHHH----HHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----CeEEEEECchhhc
Confidence 63 223332 33467999999999877777777777765443 33 6789999999763
No 304
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.93 E-value=8.6e-09 Score=92.10 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--------------------eC---CceEEEEeC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KD---GQVVNVIDT 76 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~lvDt 76 (352)
.+|+|||.+|+|||||+|+|++... ..... ...|.........+ .+ ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y-~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANY-PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCC-CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 5899999999999999999998754 21111 11222222221111 11 235789999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
||+.........+...+.. ....+|++++|+++.
T Consensus 80 aGl~~ga~~g~glg~~fL~----~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLD----DLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence 9997643222333434433 345789999999985
No 305
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.93 E-value=7.1e-09 Score=92.39 Aligned_cols=133 Identities=17% Similarity=0.081 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc-eEEEEeCCCCCC--CCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFD--LSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~lvDtpG~~~--~~~~~~~~~~~~~ 94 (352)
..-+|++||+||||||||+++++|... +..|.+..........+.+.. ...-.|-..+.. ....+..-.+.+.
T Consensus 415 ~~srvAlVGPNG~GKsTLlKl~~gdl~----p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r 490 (614)
T KOG0927|consen 415 LDSRVALVGPNGAGKSTLLKLITGDLQ----PTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMR 490 (614)
T ss_pred cccceeEecCCCCchhhhHHHHhhccc----cccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHH
Confidence 346999999999999999999999987 666655543322221110110 001111111100 0000000123333
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+..+ +..+-.-+.... .+|.+++.++-++...... |.++| +||+|...- ..+.++++.
T Consensus 491 ~ilgrf--gLtgd~q~~p~~-~LS~Gqr~rVlFa~l~~kq----P~lLlLDEPtnhLDi~ti--d~laeaiNe 554 (614)
T KOG0927|consen 491 SILGRF--GLTGDAQVVPMS-QLSDGQRRRVLFARLAVKQ----PHLLLLDEPTNHLDIETI--DALAEAINE 554 (614)
T ss_pred HHHHHh--CCCccccccchh-hcccccchhHHHHHHHhcC----CcEEEecCCCcCCCchhH--HHHHHHHhc
Confidence 333322 444445555566 8899999999988887765 66666 599999876 777777776
No 306
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.3e-08 Score=78.48 Aligned_cols=127 Identities=16% Similarity=0.216 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..|.++|..+||||+|+--|..... .+++|... ....+.. +...+++||.||... +...+..++.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~------~~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~ 104 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH------RGTVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLK 104 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc------cCeeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHcc
Confidence 6899999999999999866553322 22222211 1111222 445579999999432 2333443333
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc----cccceEEEEEeCCCCCCc-chhcHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK----NVFDYMIVVFTGGDDLED-HEKTLEDFLG 162 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~ilv~nk~D~~~~-~~~~l~~~l~ 162 (352)
.. ..+-+++||+|.. -+...-+..-+++-..+.. .-..|++|.-||-|+... +.+.+.+.+.
T Consensus 105 ~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LE 171 (238)
T KOG0090|consen 105 HN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLE 171 (238)
T ss_pred cc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHH
Confidence 22 2678899999877 4444333333333222211 111277788899999865 2233444333
No 307
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=7.7e-10 Score=97.79 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
..||++=+.++.+++.+|.+ |.+++ +||+|...- .||++|+..
T Consensus 197 ~slSGGWrMrlaLARAlf~~----pDlLLLDEPTNhLDv~av--~WLe~yL~t 243 (582)
T KOG0062|consen 197 KSLSGGWRMRLALARALFAK----PDLLLLDEPTNHLDVVAV--AWLENYLQT 243 (582)
T ss_pred cccCcchhhHHHHHHHHhcC----CCEEeecCCcccchhHHH--HHHHHHHhh
Confidence 48899999999999999987 77777 499999977 999999987
No 308
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.90 E-value=3.7e-09 Score=82.56 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
...+|+++|.+|+|||||+|+|++...+..+ .+..|+..... +. .+..++++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~--~~~~~t~~~~~-~~--~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVG--NVPGTTTSQQE-VK--LDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccccc--CCCCcccceEE-EE--ecCCEEEEECCCC
Confidence 4589999999999999999999997754432 22333333222 22 2456889999996
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=4.3e-08 Score=92.83 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=83.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhh---CCCcccccCC-------------CCCcceeeEeEEEEeeC-CceEEEEeCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSIL---GRKAFKASAG-------------SSGVTKTCEMKTTVLKD-GQVVNVIDTPGL 79 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~---g~~~~~~~~~-------------~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~ 79 (352)
..-++|+|+|+..+|||||...|+ |......... ..++|.........| . +..+++|||||.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCc
Confidence 345799999999999999997774 2221100011 123455555556677 5 489999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.|. ..++.+.+. -+|+.++|+|+...........++.+... + + |.++++||+|....
T Consensus 87 VDF-------t~EV~rslr----vlDgavvVvdaveGV~~QTEtv~rqa~~~-~--v--p~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDF-------TIEVERSLR----VLDGAVVVVDAVEGVEPQTETVWRQADKY-G--V--PRILFVNKMDRLGA 143 (697)
T ss_pred ccc-------HHHHHHHHH----hhcceEEEEECCCCeeecHHHHHHHHhhc-C--C--CeEEEEECcccccc
Confidence 875 344444443 56999999999877777777777776654 3 2 89999999999876
No 310
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.87 E-value=3.3e-09 Score=80.39 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=74.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..++++|+|..++||||+|........ .- ....++.++.....+.+. ......+|||.| .+++...
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgif-Tk-dykktIgvdflerqi~v~~Edvr~mlWdtag-----------qeEfDaI 85 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIF-TK-DYKKTIGVDFLERQIKVLIEDVRSMLWDTAG-----------QEEFDAI 85 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccc-cc-ccccccchhhhhHHHHhhHHHHHHHHHHhcc-----------chhHHHH
Confidence 347999999999999999998874332 11 111111121111111110 123446889998 3444444
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
...+|.++.+.++|++.+++.+-+. ..+-+.+..-++. + |.++|-||+|+.++
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~-I--PtV~vqNKIDlved 139 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER-I--PTVFVQNKIDLVED 139 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc-C--CeEEeeccchhhHh
Confidence 5567789999999999886665433 3455555555553 3 99999999999866
No 311
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.87 E-value=6.9e-09 Score=79.61 Aligned_cols=57 Identities=33% Similarity=0.444 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
.+++++|.+|+|||||+|.|++..........+ .|.... .+.. +..++++||||+..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~i~DtpG~~~ 140 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPG-KTKHFQ--TIFL--TPTITLCDCPGLVF 140 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC-cccceE--EEEe--CCCEEEEECCCcCC
Confidence 489999999999999999999887643322222 233222 2233 23678999999854
No 312
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.86 E-value=2.2e-08 Score=81.92 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=76.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCC-CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC---cHHHHH
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---SEFVGK 91 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~---~~~~~~ 91 (352)
.+...+++++|.+|+|||||||.++......-... ..+.|.....+. -+..++++|.||++..... ..++..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence 45568999999999999999999986653111111 111222221111 3778899999996543221 122222
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
-...++... ...-.++++++++.++...|...+.++.+. + + |+.+|+||||....
T Consensus 209 ~t~~Y~leR-~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-~--V--P~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLLER-ENLVRVFLLVDASVPIQPTDNPEIAWLGEN-N--V--PMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHHhh-hhhheeeeeeeccCCCCCCChHHHHHHhhc-C--C--CeEEeeehhhhhhh
Confidence 222233222 344445555677667777777777777663 2 2 89999999998744
No 313
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.85 E-value=5.1e-09 Score=84.79 Aligned_cols=57 Identities=28% Similarity=0.311 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccc------cCCCCC-cceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA------SAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~------~~~~~~-~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
..+|+|+|.+|+|||||+|+|++...... ..+..+ .|..... +.. +..++||||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIK--IPL--GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEE--Eec--CCCCEEEeCcCC
Confidence 36899999999999999999998653211 122222 2222222 222 235789999996
No 314
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=9e-09 Score=76.41 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee----C------CceEEEEeCCCCCCCCCCcHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----D------GQVVNVIDTPGLFDLSAGSEFV 89 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----~------~~~~~lvDtpG~~~~~~~~~~~ 89 (352)
++...+|.+|+|||||+-..+.......-.+. +..+.....+.+. + ...+.+|||.|
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsT--VGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG----------- 76 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFIST--VGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG----------- 76 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEE--eecccccceEEEeccCCCCCCcceEEEEeeecccc-----------
Confidence 46677899999999999777654321100111 1111111111110 0 12457899999
Q ss_pred HHHHHHHHhcccCCccEEEEEEecCCCCCH-HHHHHHHHHHHh-hcccccceEEEEEeCCCCCCcchhcHHHHhcccCCh
Q 018636 90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK 167 (352)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~ 167 (352)
.+.+.+.....+..+-++++++|+++.-+- .-+.|+..++.. +.... -++++.||+|+... ..+.+.
T Consensus 77 QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~P--DivlcGNK~DL~~~--R~Vs~~------- 145 (219)
T KOG0081|consen 77 QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENP--DIVLCGNKADLEDQ--RVVSED------- 145 (219)
T ss_pred HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCC--CEEEEcCccchhhh--hhhhHH-------
Confidence 566666666666788999999999843332 223444444332 12221 35566899998755 333321
Q ss_pred hHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+....+-.|+. +||-++.++.+-++.+..++
T Consensus 146 qa~~La~kyglPYfE------TSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 146 QAAALADKYGLPYFE------TSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred HHHHHHHHhCCCeee------eccccCcCHHHHHHHHHHHH
Confidence 134466777777775 45556666666666554444
No 315
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.83 E-value=2.3e-08 Score=86.16 Aligned_cols=65 Identities=25% Similarity=0.330 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE 87 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~ 87 (352)
...+|+|+|.+|+|||||+|+|+|.....++..++ +|...+. +. -+..+.++||||+..+...+.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g-~T~~~~~--~~--~~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPG-VTKAQQW--IK--LGKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCC-eEEEEEE--EE--eCCcEEEEECCCcCCCCCCcH
Confidence 44799999999999999999999987644444433 3444332 22 245688999999987654443
No 316
>PRK12288 GTPase RsgA; Reviewed
Probab=98.83 E-value=1.2e-08 Score=89.57 Aligned_cols=61 Identities=25% Similarity=0.401 Sum_probs=40.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-----CCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
..++|+|.+|+|||||||+|+|......+..+ |..|+ ....+.+ ..+ ..|+||||+.....
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l--~~~--~~liDTPGir~~~l 272 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF--PHG--GDLIDSPGVREFGL 272 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe--cCC--CEEEECCCCCcccC
Confidence 35899999999999999999998764433322 22333 3333332 122 35999999987654
No 317
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.83 E-value=4e-08 Score=94.27 Aligned_cols=43 Identities=16% Similarity=-0.040 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+|++++.++.++..++.. |-+++ +|++|.... .++.+++..
T Consensus 155 ~~LSgGekqRv~LAraL~~~----P~lLLLDEPt~~LD~~~~--~~L~~~L~~ 201 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSN----PDVLLLDEPTNHLDIETI--EWLEGFLKT 201 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCCccCHHHH--HHHHHHHHh
Confidence 48999999999999998876 55555 599998866 788877765
No 318
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.6e-08 Score=73.97 Aligned_cols=161 Identities=18% Similarity=0.154 Sum_probs=97.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhh-CCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~-g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
+...+|.++|--|+||+|++-.+- |... ...| |....+..+.+ .+-.+.++|.-|-.. ++-
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkP-----tigfnve~v~y-KNLk~~vwdLggqtS-----------irP 77 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKP-----TIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRP 77 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCC-----CCCcCcccccc-ccccceeeEccCccc-----------ccH
Confidence 356899999999999999765543 3322 1112 22223333333 556778999988444 333
Q ss_pred HHhcccCCccEEEEEEecC--CCCCHHHHHHHHHHHHh-hcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~-~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
+...+|.+.++++||+|.+ ++++..-..+..++.+- +... .++++.||.|.... ....+.+.. ++
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a---~llv~anKqD~~~~--~t~~E~~~~-----L~-- 145 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHA---KLLVFANKQDYSGA--LTRSEVLKM-----LG-- 145 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCc---eEEEEeccccchhh--hhHHHHHHH-----hC--
Confidence 4455667999999999987 44554444444444331 1111 56777899998866 444443333 11
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....++.+ ..+..||.++.++++.++++.+.+..
T Consensus 146 l~~Lk~r~~---~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 146 LQKLKDRIW---QIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hHHHhhhee---EEEeeccccccCCcHHHHHHHHHHhc
Confidence 112223332 23456888899999999999887654
No 319
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=7.4e-08 Score=86.68 Aligned_cols=142 Identities=20% Similarity=0.297 Sum_probs=88.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhh---CCC------------------cccc--------cCCCCCcceeeEeEEEEe
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSIL---GRK------------------AFKA--------SAGSSGVTKTCEMKTTVL 65 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~---g~~------------------~~~~--------~~~~~~~t~~~~~~~~~~ 65 (352)
........+++|...+|||||+..|+ |.. .|.. .....++|.......+..
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 33467899999999999999998774 221 0000 011133444444444443
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC-CCC------CHHHHHHHHHHHHhhcccccc
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF------SQEEETAVHRLPNLFGKNVFD 138 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-~~~------~~~~~~~l~~~~~~~~~~~~~ 138 (352)
....++|+|+||..+.. .-+......+|+.++|+|++ ..| .++.+... .+...+|-.
T Consensus 253 -~~~~~tliDaPGhkdFi-----------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lgi~--- 316 (603)
T KOG0458|consen 253 -KSKIVTLIDAPGHKDFI-----------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLGIS--- 316 (603)
T ss_pred -CceeEEEecCCCccccc-----------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcCcc---
Confidence 67789999999955531 11222335678999999886 222 22333443 344445643
Q ss_pred eEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH-HhcC
Q 018636 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD 177 (352)
Q Consensus 139 ~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~ 177 (352)
.+||++||+|..+=+...++++... +..++ +.|+
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~g 351 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCG 351 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence 8999999999985544777777776 66666 5555
No 320
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.6e-07 Score=79.13 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=94.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC---cccccCCC--CCcceeeEeEEEEee------C--CceEEEEeCCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK---AFKASAGS--SGVTKTCEMKTTVLK------D--GQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~---~~~~~~~~--~~~t~~~~~~~~~~~------~--~~~~~lvDtpG~~~~~~~ 85 (352)
..+|+++|+..+|||||.++|..-. .|+..+.+ .++|.+......... + .-++++||.||..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence 4899999999999999999996321 22221211 223333333322221 1 2356999999932
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc--hhcHHHHhcc
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGH 163 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~--~~~l~~~l~~ 163 (352)
.+.+.+.-...-+|..++|+|+...........|-.-.. +.+ +.++|+||+|..... ...+++.-..
T Consensus 82 ------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-~c~----klvvvinkid~lpE~qr~ski~k~~kk 150 (522)
T KOG0461|consen 82 ------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-LCK----KLVVVINKIDVLPENQRASKIEKSAKK 150 (522)
T ss_pred ------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-hcc----ceEEEEeccccccchhhhhHHHHHHHH
Confidence 333333333345688999999873333333333332222 333 689999999988551 1233333333
Q ss_pred cCChhHHHHHHhcCCcEEEEcCCCcccccch----HHHHHHHHHHHHHHH
Q 018636 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGT----EQVRQLLSLVNSVIV 209 (352)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~----~~~~~L~~~i~~~~~ 209 (352)
++..++..+-+- -.+.++.|+.++ .++.+|.+.+...+-
T Consensus 151 -----~~KtLe~t~f~g--~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 151 -----VRKTLESTGFDG--NSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred -----HHHHHHhcCcCC--CCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 454554433111 113345677777 888888888776553
No 321
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.79 E-value=5.7e-08 Score=85.02 Aligned_cols=168 Identities=15% Similarity=0.294 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC-ccccc-------------CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK-AFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~ 85 (352)
.+||||.+...|||||+..|+.+. .|... .-..++|.-..-..+.| ++..+.++||||..|..+
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG- 83 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG- 83 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc-
Confidence 689999999999999999987543 11110 01123444333444556 789999999999888653
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
++.+.+. -+|++++++|+.+..-...+..+....+. |- +-|+|+||+|......+++- ..
T Consensus 84 ------EVERvl~----MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~Arp~~Vv---d~-- 143 (603)
T COG1217 84 ------EVERVLS----MVDGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDARPDEVV---DE-- 143 (603)
T ss_pred ------hhhhhhh----hcceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCCCHHHHH---HH--
Confidence 2333332 46999999999977777777777766653 33 56888899999865222222 22
Q ss_pred ChhHHHHHHhcCCc------EEEE-c---CC-CcccccchHHHHHHHHHHHHHHHhcC
Q 018636 166 PKPLKEILQLCDNR------CVLF-D---NK-TKDEAKGTEQVRQLLSLVNSVIVQNG 212 (352)
Q Consensus 166 ~~~~~~~~~~~~~~------~~~~-~---~~-~~~sa~~~~~~~~L~~~i~~~~~~~~ 212 (352)
.-+++...+.. .++| + .. .........++..|++.|.+.++...
T Consensus 144 ---vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 144 ---VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred ---HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 22232222210 1111 1 11 11222334568899999998887543
No 322
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.79 E-value=3e-08 Score=85.00 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=44.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 86 (352)
...+|+|+|.+|+|||||+|.|++.....++..++ .|...+. +.. +..+.++||||+..+...+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g-~T~~~~~--~~~--~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPG-VTKGQQW--IKL--SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCC-eecceEE--EEe--CCCEEEEECCCcccCCCCc
Confidence 34789999999999999999999887544444333 2333322 222 3467899999997654333
No 323
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=5.7e-08 Score=89.38 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-----------------CCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~lvDtpG~~~~ 82 (352)
..+.|+|+..+|||-|+..|.|.++... ..|++|......++... .-..+.+|||||.
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqeg--eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh--- 550 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEG--EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH--- 550 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccc--cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc---
Confidence 5789999999999999999998776332 33444543332222110 1235679999993
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc----c-----
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----H----- 153 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~----~----- 153 (352)
+.|...-......+|..|+|+|+.+.+.......+.+|+..- . |+||.+||+|.+-. +
T Consensus 551 --------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rk---t--pFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 551 --------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRK---T--PFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred --------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcC---C--CeEEeehhhhhhcccccCCCchHH
Confidence 334444344446789999999998888888777777776542 2 89999999997521 1
Q ss_pred -------hhcHHHHhcccCChhHHHHHHhcC-----CcEE-------EEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 154 -------EKTLEDFLGHECPKPLKEILQLCD-----NRCV-------LFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 154 -------~~~l~~~l~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.....+|-.+ +..++..+. ...+ .|-..+++||..+.|+.+|+-++..+..
T Consensus 618 ~~lkkQ~k~v~~EF~~R-----~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKER-----LNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHhhHHHHHHHHHH-----HHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 1122223222 333333221 1111 1123467899999999999988776543
No 324
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=4.9e-08 Score=73.35 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=71.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+++++|--|+|||||++.|-......-.|+..+ ......+ .+..++.+|.-| ....+....
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHP-----TSE~l~I-g~m~ftt~DLGG-----------H~qArr~wk 82 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP-----TSEELSI-GGMTFTTFDLGG-----------HLQARRVWK 82 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCCCcCC-----ChHHhee-cCceEEEEcccc-----------HHHHHHHHH
Confidence 36899999999999999999964433111132222 1222333 677788999988 334444455
Q ss_pred cccCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 99 MAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.++..+|+++|.+|+. +++.+. +..++.+... ..-.+.|++++.||+|....
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es-~~eld~ll~~-e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAES-KKELDALLSD-ESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHH-HHHHHHHHhH-HHHhcCcceeecccccCCCc
Confidence 6667899999999987 333322 2222222211 10123399999999999866
No 325
>PRK12289 GTPase RsgA; Reviewed
Probab=98.78 E-value=1.7e-08 Score=88.64 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCC-----Ccce-eeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~-----~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
..++|+|.+|+|||||||.|++......+..++ -.|+ ....+ ..+.+ ..|+|||||....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNG--GLLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCC--cEEEeCCCccccc
Confidence 468999999999999999999876544333222 2233 33222 22222 3699999987643
No 326
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.77 E-value=1.7e-08 Score=84.66 Aligned_cols=60 Identities=23% Similarity=0.218 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCC-----CCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-----~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
..++|+|.+|+|||||||.|++......+.. .|..|+ ....+.. . ...|+||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccCC
Confidence 5899999999999999999998765433221 223333 3333332 2 237999999987553
No 327
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.6e-08 Score=85.22 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..||++=+.++.+.+.+|-. |++++ +||+|+..- .||.+|+.- |+..+
T Consensus 411 ~kFSGGWRMRvSLARALflE----PTLLMLDEPTNHLDLNAV--IWLdNYLQg-----WkKTL 462 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLE----PTLLMLDEPTNHLDLNAV--IWLDNYLQG-----WKKTL 462 (807)
T ss_pred cccCCceeeehhHHHHHhcC----ceeeeecCCcccccccee--eehhhHHhh-----hhhee
Confidence 57788877888888888876 78887 499999877 999999987 76443
No 328
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.76 E-value=7.5e-08 Score=76.30 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 58 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI----PNGDNDEW 58 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC----CCCcEEEE
Confidence 457999999999999999999999876 55555443
No 329
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=6.2e-08 Score=80.41 Aligned_cols=43 Identities=28% Similarity=0.235 Sum_probs=31.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 20 l~~vs~~i~--~G~~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 62 (220)
T cd03293 20 LEDISLSVE--EGEFVALVGPSGCGKSTLLRIIAGLER----PTSGEVL 62 (220)
T ss_pred EeceeEEEe--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 344444443 347899999999999999999999865 4555444
No 330
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=3.9e-08 Score=81.18 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=32.8
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 15 il~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 58 (213)
T cd03259 15 ALDDLSLTVE--PGEFLALLGPSGCGKTTLLRLIAGLER----PDSGEIL 58 (213)
T ss_pred eecceeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEE
Confidence 4445555544 347899999999999999999999865 4555444
No 331
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.76 E-value=3.4e-08 Score=83.67 Aligned_cols=139 Identities=14% Similarity=0.166 Sum_probs=70.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~ 85 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+........ .+ ...-.++.+.+.+......
T Consensus 27 il~~isl~i~--~Ge~~~I~G~NGsGKSTLlk~l~Gl~~----p~~G~i~~~g~~~~-~~-~~~i~~v~q~~~l~~~~tv 98 (257)
T PRK11247 27 VLNQLDLHIP--AGQFVAVVGRSGCGKSTLLRLLAGLET----PSAGELLAGTAPLA-EA-REDTRLMFQDARLLPWKKV 98 (257)
T ss_pred eeeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEEECCEEHH-Hh-hCceEEEecCccCCCCCcH
Confidence 3444444443 347999999999999999999999876 45554432211000 00 0111123344433321100
Q ss_pred cHHH--------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcch
Q 018636 86 SEFV--------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHE 154 (352)
Q Consensus 86 ~~~~--------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~ 154 (352)
.+.+ ...+..++... +.... .......+|++++.++.++..+.... +++++ ++.+|....
T Consensus 99 ~enl~~~~~~~~~~~~~~~l~~~--gl~~~--~~~~~~~LSgGqkqrl~laraL~~~p---~lllLDEPt~~LD~~~~-- 169 (257)
T PRK11247 99 IDNVGLGLKGQWRDAALQALAAV--GLADR--ANEWPAALSGGQKQRVALARALIHRP---GLLLLDEPLGALDALTR-- 169 (257)
T ss_pred HHHHHhcccchHHHHHHHHHHHc--CChhH--hcCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHH--
Confidence 0000 11111111111 11111 11111479999999999999887763 44444 477776544
Q ss_pred hcHHHHh
Q 018636 155 KTLEDFL 161 (352)
Q Consensus 155 ~~l~~~l 161 (352)
..+.+.+
T Consensus 170 ~~l~~~L 176 (257)
T PRK11247 170 IEMQDLI 176 (257)
T ss_pred HHHHHHH
Confidence 4444443
No 332
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.75 E-value=4.9e-09 Score=93.02 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCccc---ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFK---ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..|+|||.+|+|||||+|+|++..... ...+..+.|+.. ...+.. +..+.++||||+.........+..+....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~-~~~~~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD-LIEIPL--DDGHSLYDTPGIINSHQMAHYLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee-EEEEEe--CCCCEEEECCCCCChhHhhhhcCHHHHhh
Confidence 589999999999999999999854210 112222223322 112222 34467999999986421111111111111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
+. -...+....|+++....+.-+...++..+.. ... .+.+.+++.+..
T Consensus 232 ~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~~~--~~~~~~~~~~~~ 279 (360)
T TIGR03597 232 IT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---EKT--SFTFYVSNELNI 279 (360)
T ss_pred cC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---Cce--EEEEEccCCcee
Confidence 11 1235677777777664444445555444332 111 344445555544
No 333
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.75 E-value=2e-08 Score=82.69 Aligned_cols=44 Identities=27% Similarity=0.330 Sum_probs=34.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+..+.+ ..++|+|+||+|||||+++|+|-.. +..|.+.
T Consensus 19 vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~----p~~G~i~ 62 (254)
T COG1121 19 VLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLK----PSSGEIK 62 (254)
T ss_pred eeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCc----CCcceEE
Confidence 556666666543 7999999999999999999999766 5666555
No 334
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.3e-08 Score=87.72 Aligned_cols=147 Identities=14% Similarity=0.027 Sum_probs=82.1
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EE---------EEeeCCceEEEE
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KT---------TVLKDGQVVNVI 74 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~---------~~~~~~~~~~lv 74 (352)
.+..+..+..+. +.++++||++|||||||++.|+|... +..|.+++.... .. +.|...+...+-
T Consensus 335 ~~l~~l~~t~~~--g~~talvG~SGaGKSTLl~lL~G~~~----~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~ 408 (559)
T COG4988 335 PALSDLNLTIKA--GQLTALVGASGAGKSTLLNLLLGFLA----PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408 (559)
T ss_pred cccCCceeEecC--CcEEEEECCCCCCHHHHHHHHhCcCC----CCCceEEECCccccccCHHHHHhHeeeeCCCCcccc
Confidence 344555566554 48999999999999999999999877 555555443211 10 111112222222
Q ss_pred eC----CCCCCCCCCcHHHHHHHHHHHh-cccCCccEEEEEE-ecCCCCCHHHHHHHHHHHHhhcccccceEEEE---Ee
Q 018636 75 DT----PGLFDLSAGSEFVGKEIVKCLG-MAKDGIHAFLVVF-SVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FT 145 (352)
Q Consensus 75 Dt----pG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~n 145 (352)
+| ..+.....+++++.+.+...-. ...+.++++-.++ +.+..+|+++..++.+.+.++.+. +++++ +.
T Consensus 409 gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~---~l~llDEpTA 485 (559)
T COG4988 409 GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA---SLLLLDEPTA 485 (559)
T ss_pred ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC---CEEEecCCcc
Confidence 22 2223333334433332222211 1112233443333 444689999999999999987763 55555 68
Q ss_pred CCCCCCcchhcHHHHhc
Q 018636 146 GGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~ 162 (352)
|+|..+. ..+.+.+.
T Consensus 486 ~LD~etE--~~i~~~l~ 500 (559)
T COG4988 486 HLDAETE--QIILQALQ 500 (559)
T ss_pred CCCHhHH--HHHHHHHH
Confidence 8887765 44444433
No 335
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.75 E-value=7.7e-08 Score=84.44 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc-----------ccc--cCCCCCcceeeEeEEEEee--C--CceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA-----------FKA--SAGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~-----------~~~--~~~~~~~t~~~~~~~~~~~--~--~~~~~lvDtpG~~~~ 82 (352)
.+..+|.+-..|||||...|+.... ..+ ..-..++|...+.....+. + ...+.+|||||..|.
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 5678888999999999988753221 000 0122445665554444332 2 346789999998775
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
. -++.+.+ ..+.+.++|+|++...........-++... +. -++.|+||+|+...+.+...+.
T Consensus 90 s-------YEVSRSL----AACEGalLvVDAsQGveAQTlAN~YlAle~---~L--eIiPViNKIDLP~Adpervk~e-- 151 (603)
T COG0481 90 S-------YEVSRSL----AACEGALLVVDASQGVEAQTLANVYLALEN---NL--EIIPVLNKIDLPAADPERVKQE-- 151 (603)
T ss_pred E-------EEehhhH----hhCCCcEEEEECccchHHHHHHHHHHHHHc---Cc--EEEEeeecccCCCCCHHHHHHH--
Confidence 3 1222222 245778999999866655555544444432 22 5888899999987633333322
Q ss_pred ccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
+.+++..-. +.....||+++.++.++++.|.+.++...+
T Consensus 152 ------Ie~~iGid~------~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 152 ------IEDIIGIDA------SDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred ------HHHHhCCCc------chheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 333442211 123356999999999999999998876443
No 336
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.2e-07 Score=78.22 Aligned_cols=139 Identities=17% Similarity=0.244 Sum_probs=87.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc---------ccc---c--CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA---------FKA---S--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~---------~~~---~--~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
.+..+|+.||+...|||||..+|++... +.. . .-..++|.......+.. ..+.+..||+||..|
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD- 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD- 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH-
Confidence 3458999999999999999999864321 000 0 11133455444444444 678889999999433
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
+.+-+....-..|..|+|+.+++....+.+..+-+.+. .|-. .+++++||+|..++ ..+-+.+.
T Consensus 88 ----------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq-vGvp---~ivvflnK~Dmvdd--~ellelVe 151 (394)
T COG0050 88 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ-VGVP---YIVVFLNKVDMVDD--EELLELVE 151 (394)
T ss_pred ----------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh-cCCc---EEEEEEecccccCc--HHHHHHHH
Confidence 22222222235688888888886666666666555444 3542 46666899999976 55544444
Q ss_pred ccCChhHHHHHHhcC
Q 018636 163 HECPKPLKEILQLCD 177 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (352)
. .+++++...+
T Consensus 152 m----EvreLLs~y~ 162 (394)
T COG0050 152 M----EVRELLSEYG 162 (394)
T ss_pred H----HHHHHHHHcC
Confidence 3 3677776644
No 337
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.74 E-value=1.1e-07 Score=78.04 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh------CCCc-----ccccCCCCCcce-----------eeEeEEEEee---------
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL------GRKA-----FKASAGSSGVTK-----------TCEMKTTVLK--------- 66 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~------g~~~-----~~~~~~~~~~t~-----------~~~~~~~~~~--------- 66 (352)
...+|+|.|++|+|||||++.|. |..+ -++.+.+|+.-. +..+|--...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 45899999999999999999985 2221 112222221100 0111110000
Q ss_pred ------------CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC--CCCCHHHHHHHHHHHHhh
Q 018636 67 ------------DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLF 132 (352)
Q Consensus 67 ------------~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~ 132 (352)
-|..+.||.|.|.+... -++. .-+|.+++|..+. +.+...-.-. .+.
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE-------~~I~-------~~aD~~v~v~~Pg~GD~iQ~~KaGi----mEi- 168 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE-------VDIA-------DMADTVVLVLVPGLGDEIQAIKAGI----MEI- 168 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH-------HHHH-------TTSSEEEEEEESSTCCCCCTB-TTH----HHH-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH-------HHHH-------HhcCeEEEEecCCCccHHHHHhhhh----hhh-
Confidence 24567889999877621 1111 3568888888765 2222211112 222
Q ss_pred cccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEE-cCCCcccccchHHHHHHHHHHHHHHH
Q 018636 133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 133 ~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..++|+||.|.... +..... +...+.......-.| .++..+||.++.++++|++.|.+...
T Consensus 169 ------aDi~vVNKaD~~gA-----~~~~~~-----l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 169 ------ADIFVVNKADRPGA-----DRTVRD-----LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp -------SEEEEE--SHHHH-----HHHHHH-----HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ------ccEEEEeCCChHHH-----HHHHHH-----HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 57899999995433 222222 444554433211001 12345677889999999999888654
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.74 E-value=1.3e-07 Score=89.43 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=34.9
Q ss_pred CCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 4 RVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
..+.++.++.... +.+++|+|+||||||||+++|+|... +..|.+.
T Consensus 20 ~~il~~vs~~i~~--Ge~~~iiG~NGsGKSTLlk~i~G~~~----p~~G~i~ 65 (556)
T PRK11819 20 KQILKDISLSFFP--GAKIGVLGLNGAGKSTLLRIMAGVDK----EFEGEAR 65 (556)
T ss_pred CeeeeCceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 3455666666654 48999999999999999999999876 5555543
No 339
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.74 E-value=2.3e-08 Score=84.01 Aligned_cols=62 Identities=34% Similarity=0.408 Sum_probs=40.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccC-----CCCCcce-eeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-----~~~~~t~-~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
+...+|+|.+|+|||||+|+|.+......+. ..|..|+ ....+. + + ..-.|+|||||.....
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~--l-~-~gG~iiDTPGf~~~~l 231 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFP--L-P-GGGWIIDTPGFRSLGL 231 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEE--c-C-CCCEEEeCCCCCccCc
Confidence 3588999999999999999999865433221 2333443 233332 2 1 2335899999987543
No 340
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.74 E-value=3.8e-07 Score=76.92 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeC----------------CceEEEEeCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKD----------------GQVVNVIDTPGL 79 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~----------------~~~~~lvDtpG~ 79 (352)
...++|+|||.+++|||||+|+|+..... +...+ +|.+.....+..++ .-.++++|..|+
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~---~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG---AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC---ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 35689999999999999999999976542 22222 33332222222111 124689999999
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEec
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV 113 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 113 (352)
.........++..+.+.+. .+|+++-|+++
T Consensus 95 vkGAs~G~GLGN~FLs~iR----~vDaifhVVr~ 124 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIR----HVDAIFHVVRA 124 (391)
T ss_pred ccCcccCcCchHHHHHhhh----hccceeEEEEe
Confidence 7765555555665555443 56777776654
No 341
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.74 E-value=3.9e-07 Score=75.89 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=59.3
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHH-HHHHhhcccccceEEEEEeC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ilv~nk 146 (352)
|..+.||.|-|.+.+.. .+. .-+|.+++|.-+. . +.+...++ -+.++ -.++|+||
T Consensus 143 G~DvIIVETVGvGQsev-------~I~-------~~aDt~~~v~~pg--~-GD~~Q~iK~GimEi-------aDi~vINK 198 (323)
T COG1703 143 GYDVIIVETVGVGQSEV-------DIA-------NMADTFLVVMIPG--A-GDDLQGIKAGIMEI-------ADIIVINK 198 (323)
T ss_pred CCCEEEEEecCCCcchh-------HHh-------hhcceEEEEecCC--C-CcHHHHHHhhhhhh-------hheeeEec
Confidence 44577888888776421 111 2457777776543 1 12222222 23332 46899999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcC--CcEEEEc-CCCcccccchHHHHHHHHHHHHHHHh
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFD-NKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.|.... +.-... +...+.... .+...|. +...++|..++++++|++.|.+....
T Consensus 199 aD~~~A--~~a~r~--------l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 199 ADRKGA--EKAARE--------LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred cChhhH--HHHHHH--------HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 995544 111111 222222211 1112222 34567888899999999999988754
No 342
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.1e-08 Score=87.26 Aligned_cols=125 Identities=16% Similarity=0.216 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCC---CCCCcHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFD---LSAGSEFVGKEIV 94 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~---~~~~~~~~~~~~~ 94 (352)
-||+|||+||+|||||+..|+|... |..|............+. .+..++--.||--+- ..... ...+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~----P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpy----q~AR 685 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLD----PNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPY----QEAR 685 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCC----CCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCCh----HHHH
Confidence 5999999999999999999999987 555543333222222111 122333333431100 00011 1122
Q ss_pred HHHhccc--CCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE----eCCCCCCcchhcHHHHhcc
Q 018636 95 KCLGMAK--DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF----TGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 95 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~----nk~D~~~~~~~~l~~~l~~ 163 (352)
.++-... ..+|.|-+ . .+|++.+.++.++...++. |.++|+ |.+|+.+- ..|.+.++.
T Consensus 686 K~LG~fGL~sHAHTiki----k-dLSGGQKaRValaeLal~~----PDvlILDEPTNNLDIESI--DALaEAIne 749 (807)
T KOG0066|consen 686 KQLGTFGLASHAHTIKI----K-DLSGGQKARVALAELALGG----PDVLILDEPTNNLDIESI--DALAEAINE 749 (807)
T ss_pred HHhhhhhhhhccceEee----e-ecCCcchHHHHHHHHhcCC----CCEEEecCCCCCcchhhH--HHHHHHHHh
Confidence 2221111 23344433 2 6778899999988887776 666664 77887655 455555544
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.72 E-value=4.2e-08 Score=77.96 Aligned_cols=58 Identities=28% Similarity=0.404 Sum_probs=39.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~ 80 (352)
...+|+++|.+|+|||||+|.|++.......... +.|...... .. ...+.++||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~-~~T~~~~~~--~~--~~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKP-GVTKGIQWI--KI--SPGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCC-CEEeeeEEE--Ee--cCCEEEEECCCCC
Confidence 3479999999999999999999987653322222 233333332 22 2567899999973
No 344
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.72 E-value=1.6e-08 Score=87.09 Aligned_cols=136 Identities=13% Similarity=0.041 Sum_probs=76.1
Q ss_pred CCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCC
Q 018636 4 RVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFD 81 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~ 81 (352)
..+.++.++.... +..++|+|+||||||||+++|+|... ++.|.+........-.. ....-.++.+.|.++.
T Consensus 18 ~~~l~~vs~~i~~--Gei~gllG~NGAGKTTllk~l~gl~~----p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~ 91 (293)
T COG1131 18 KTALDGVSFEVEP--GEIFGLLGPNGAGKTTLLKILAGLLK----PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP 91 (293)
T ss_pred CEEEeceeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCc
Confidence 3455565666554 37899999999999999999999987 66665554332111100 0122346777777655
Q ss_pred CCCCcHHHHHHHHHHHhcc-----------c--CCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----E
Q 018636 82 LSAGSEFVGKEIVKCLGMA-----------K--DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----F 144 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~ 144 (352)
.-. -.+....+....... . -+..... -..+ ..+|.+.+.++.++..+++. |-+++ +
T Consensus 92 ~lT-~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~-~~lS~G~kqrl~ia~aL~~~----P~lliLDEPt 164 (293)
T COG1131 92 ELT-VRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKV-RTLSGGMKQRLSIALALLHD----PELLILDEPT 164 (293)
T ss_pred ccc-HHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-Ccch-hhcCHHHHHHHHHHHHHhcC----CCEEEECCCC
Confidence 322 111111111111000 0 0111100 0012 47999999999999999887 55555 4
Q ss_pred eCCCCCCc
Q 018636 145 TGGDDLED 152 (352)
Q Consensus 145 nk~D~~~~ 152 (352)
|-+|-...
T Consensus 165 ~GLDp~~~ 172 (293)
T COG1131 165 SGLDPESR 172 (293)
T ss_pred cCCCHHHH
Confidence 66665433
No 345
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=6.7e-08 Score=81.10 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 16 l~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 58 (235)
T cd03261 16 LKGVDLDVR--RGEILAIIGPSGSGKSTLLRLIVGLLR----PDSGEVL 58 (235)
T ss_pred EeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 334444443 447999999999999999999999865 4455443
No 346
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.71 E-value=3e-08 Score=81.87 Aligned_cols=132 Identities=12% Similarity=0.094 Sum_probs=67.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHH--------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV-------- 89 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~-------- 89 (352)
.+.+++|+|+||+|||||+++|+|... +..|.++................++...+++.......+.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH----VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG 111 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC
Confidence 457999999999999999999999876 55555443321110000001112333445443311100100
Q ss_pred ---HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcHHHHhc
Q 018636 90 ---GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l~~~l~ 162 (352)
...+...+.. -+.... .-..+ ..+|++++.++.++..+.... +++++ ++.+|.... ..+.+++.
T Consensus 112 ~~~~~~~~~~l~~--~~l~~~-~~~~~-~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~--~~l~~~l~ 181 (214)
T PRK13543 112 RRAKQMPGSALAI--VGLAGY-EDTLV-RQLSAGQKKRLALARLWLSPA---PLWLLDEPYANLDLEGI--TLVNRMIS 181 (214)
T ss_pred CcHHHHHHHHHHH--cCChhh-ccCCh-hhCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCHHHH--HHHHHHHH
Confidence 0011111110 011111 00111 479999999999999887763 34444 477776544 44444443
No 347
>PRK00098 GTPase RsgA; Reviewed
Probab=98.71 E-value=5.3e-08 Score=84.24 Aligned_cols=60 Identities=30% Similarity=0.326 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCC-----CCCccee-eEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-----~~~~t~~-~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
+..++|+|++|+|||||+|+|+|......+.. .|..|+. ...+ .. + ....++||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~--~~-~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY--DL-P-GGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE--Ec-C-CCcEEEECCCcCcc
Confidence 36899999999999999999998865333222 1222332 2222 22 2 23479999999864
No 348
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=7.6e-08 Score=81.60 Aligned_cols=44 Identities=27% Similarity=0.259 Sum_probs=32.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 il~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 59 (255)
T PRK11248 16 ALEDINLTLE--SGELLVVLGPSGCGKTTLLNLIAGFVP----YQHGSIT 59 (255)
T ss_pred eEeeeeEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 3444444444 347999999999999999999999876 4555443
No 349
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.70 E-value=1.1e-07 Score=76.83 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=82.5
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-----EeeCCceEEEEeCCCCCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~lvDtpG~~~ 81 (352)
.++.++... .+..++|+|++|||||||.++|+|-.. ++.|.++.......- .....-++.+=|-.+-..
T Consensus 23 l~~VS~~i~--~Ge~lgivGeSGsGKSTL~r~l~Gl~~----p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 23 LNNVSLEIE--RGETLGIVGESGSGKSTLARLLAGLEK----PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hcceeEEec--CCCEEEEEcCCCCCHHHHHHHHhcccC----CCCceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 334444443 458999999999999999999999887 666665554321110 000122222333333222
Q ss_pred CCCCcHH-------------HHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----E
Q 018636 82 LSAGSEF-------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----F 144 (352)
Q Consensus 82 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~ 144 (352)
+..+-+. ..+.+...+... +.+.-++---+ +.+|++++.++..++.+..+ |-+++ +
T Consensus 97 P~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~V--gL~~~~l~R~P-~eLSGGQ~QRiaIARAL~~~----PklLIlDEpt 169 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLSKSQQRIAELLDQV--GLPPSFLDRRP-HELSGGQRQRIAIARALIPE----PKLLILDEPT 169 (252)
T ss_pred cchhHHHHHhhhhccCCccHHHHHHHHHHHHc--CCCHHHHhcCc-hhcChhHHHHHHHHHHhccC----CCEEEecCch
Confidence 2111111 111122222211 22111111122 37999999999999998776 55555 3
Q ss_pred eCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCC
Q 018636 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (352)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
+-+|..-. .. .++- +.++-+..+-.|+++++.
T Consensus 170 SaLD~siQ--a~---Ilnl-----L~~l~~~~~lt~l~IsHd 201 (252)
T COG1124 170 SALDVSVQ--AQ---ILNL-----LLELKKERGLTYLFISHD 201 (252)
T ss_pred hhhcHHHH--HH---HHHH-----HHHHHHhcCceEEEEeCc
Confidence 44443311 22 2222 455666666677777766
No 350
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.8e-07 Score=74.41 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999999865
No 351
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.70 E-value=2.3e-07 Score=87.75 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=33.9
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+.++.++... .+.+++|+|+||||||||+++|+|... +..|.+.
T Consensus 19 ~il~~is~~i~--~Ge~~~liG~NGsGKSTLl~~i~G~~~----p~~G~i~ 63 (552)
T TIGR03719 19 EILKDISLSFF--PGAKIGVLGLNGAGKSTLLRIMAGVDK----EFNGEAR 63 (552)
T ss_pred eeecCceEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 34555555554 347999999999999999999999876 5555544
No 352
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.69 E-value=4.4e-07 Score=81.20 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=70.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh------CCCcccccCCCCC---------cc--eeeEeEEEEe----------------
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSG---------VT--KTCEMKTTVL---------------- 65 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~------g~~~~~~~~~~~~---------~t--~~~~~~~~~~---------------- 65 (352)
...|+++|.+|+||||++..|+ |..+.-....... .. ....++....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999886 4332111111100 00 0111111100
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
..+..+.||||||... .+..+..++...... ..++.+++|+|+... .........+....+ +.-+|+|
T Consensus 180 ~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~-----~~g~IlT 247 (429)
T TIGR01425 180 KENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIG--QAAEAQAKAFKDSVD-----VGSVIIT 247 (429)
T ss_pred hCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccC--hhHHHHHHHHHhccC-----CcEEEEE
Confidence 0246788999999655 334455666555432 357889999987622 222333344443323 6788999
Q ss_pred CCCCCCc
Q 018636 146 GGDDLED 152 (352)
Q Consensus 146 k~D~~~~ 152 (352)
|+|....
T Consensus 248 KlD~~ar 254 (429)
T TIGR01425 248 KLDGHAK 254 (429)
T ss_pred CccCCCC
Confidence 9998755
No 353
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=2.9e-07 Score=86.74 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=32.8
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++.++... .+.+++|+|+||||||||+++|+|... +..|.+.
T Consensus 16 il~~vsl~i~--~Ge~~~liG~NGsGKSTLl~~l~Gl~~----p~~G~i~ 59 (530)
T PRK15064 16 LFENISVKFG--GGNRYGLIGANGCGKSTFMKILGGDLE----PSAGNVS 59 (530)
T ss_pred eEeCCEEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 4455555554 348999999999999999999999765 4445443
No 354
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.69 E-value=9.1e-08 Score=73.55 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV 54 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~ 54 (352)
.+..++|+|+||+|||||+++|+|... +..|.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i 57 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIV 57 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEE
Confidence 447999999999999999999999876 444543
No 355
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.69 E-value=4.3e-08 Score=70.60 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=94.2
Q ss_pred EEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhccc
Q 018636 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (352)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (352)
++|.+++|||.|+-..-.. .|-.+....++..+.....+.. ++ ..+.+|||.| .+.+.+....+|
T Consensus 2 llgds~~gktcllir~kdg-afl~~~fistvgid~rnkli~~-~~~kvklqiwdtag-----------qerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDG-AFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAG-----------QERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccC-ceecCceeeeeeeccccceecc-CCcEEEEEEeeccc-----------hHHHhhhhHhhh
Confidence 7899999999886443211 1111111111222222222333 33 3567999999 566777777788
Q ss_pred CCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcE
Q 018636 102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (352)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (352)
..+|+++++.|+.++-|-.. +.++..+.+.-...+ .++++.||+|.... . .+.. ..-..+.+..+-.+
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e--r----~v~~---ddg~kla~~y~ipf 137 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE--R----AVKR---DDGEKLAEAYGIPF 137 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh--h----cccc---chHHHHHHHHCCCc
Confidence 99999999999986666444 467777777654444 67788999998643 1 1111 01222333333333
Q ss_pred EEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 181 ~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. .+|++++-+++--+-.|.+-+..
T Consensus 138 m------etsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 138 M------ETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred e------eccccccccHhHHHHHHHHHHHH
Confidence 2 56788888888776666555443
No 356
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.69 E-value=1.3e-08 Score=90.78 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+|++-+.++.+.+.+|-+ |.+++ +||+|+... .||+++|..
T Consensus 220 ~~~SgGwrmR~aLAr~Lf~k----P~LLLLDEPtnhLDleA~--~wLee~L~k 266 (614)
T KOG0927|consen 220 KDLSGGWRMRAALARALFQK----PDLLLLDEPTNHLDLEAI--VWLEEYLAK 266 (614)
T ss_pred hccCchHHHHHHHHHHHhcC----CCEEEecCCccCCCHHHH--HHHHHHHHh
Confidence 47889999999999999887 77777 599999988 999999987
No 357
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.8e-07 Score=80.23 Aligned_cols=118 Identities=17% Similarity=0.228 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh--CCCcccccCC------------------CCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL--GRKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~--g~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
...+.|||-++.+|||||-..|+ |......+.. ..++++...+-.+.+ .+..++|+|||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCC
Confidence 34789999999999999986653 3322111110 122233333444445 78999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|..|.+ ++..+.+. -+|..+.|+|+...+....+.+++.++.. +- |++-.+||+|....
T Consensus 90 GHeDFS-------EDTYRtLt----AvDsAvMVIDaAKGiE~qT~KLfeVcrlR-~i----PI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFS-------EDTYRTLT----AVDSAVMVIDAAKGIEPQTLKLFEVCRLR-DI----PIFTFINKLDREGR 148 (528)
T ss_pred Cccccc-------hhHHHHHH----hhheeeEEEecccCccHHHHHHHHHHhhc-CC----ceEEEeeccccccC
Confidence 988764 22222222 46899999998877877777777765543 33 99999999999877
No 358
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=7.3e-08 Score=80.00 Aligned_cols=36 Identities=19% Similarity=0.077 Sum_probs=28.2
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 16 l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 16 VRGVSFRVR--RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred eeceeEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444443 347999999999999999999999865
No 359
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.68 E-value=1.8e-07 Score=80.80 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=67.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCce-------------EE
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-------------VN 72 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-------------~~ 72 (352)
+.++.++... ++..++|+|++||||||||++|+|-.. ++.|.+........-.-+..+. ++
T Consensus 18 ~l~~i~l~i~--~Gef~vllGPSGcGKSTlLr~IAGLe~----~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmt 91 (338)
T COG3839 18 VLKDVNLDIE--DGEFVVLLGPSGCGKSTLLRMIAGLEE----PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMT 91 (338)
T ss_pred eeecceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCc
Confidence 3444444443 347899999999999999999999887 6666544332221111111122 22
Q ss_pred EEeCCCCCCC--CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE
Q 018636 73 VIDTPGLFDL--SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (352)
Q Consensus 73 lvDtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~ 144 (352)
+.|-.+|.-- .....++.+.+...... -+++.++--. + ..+|++++.++.+.+.+..+ |-++++
T Consensus 92 V~~Niaf~Lk~~~~~k~ei~~rV~eva~~--L~l~~lL~r~-P-~~LSGGQrQRVAlaRAlVr~----P~v~L~ 157 (338)
T COG3839 92 VYENIAFGLKLRGVPKAEIDKRVKEVAKL--LGLEHLLNRK-P-LQLSGGQRQRVALARALVRK----PKVFLL 157 (338)
T ss_pred HHHHhhhhhhhCCCchHHHHHHHHHHHHH--cCChhHHhcC-c-ccCChhhHHHHHHHHHHhcC----CCEEEe
Confidence 2233333211 11223333333333221 1222222211 2 37899999999999888776 566653
No 360
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.67 E-value=1.5e-07 Score=74.31 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=65.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceE-EEEeCCCCCCCCCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVV-NVIDTPGLFDLSAG 85 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~lvDtpG~~~~~~~ 85 (352)
.++..+... ++..++|+|+||+|||||+++|+|... +..|.+..... ..+ ++...+.+..
T Consensus 17 l~~i~l~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~~~---------~~i~~~~q~~~~~~---- 77 (166)
T cd03223 17 LKDLSFEIK--PGDRLLITGPSGTGKSSLFRALAGLWP----WGSGRIGMPEG---------EDLLFLPQRPYLPL---- 77 (166)
T ss_pred eecCeEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCC---------ceEEEECCCCcccc----
Confidence 344444443 347999999999999999999999876 55554433210 111 1222232221
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcHHHHh
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l~~~l 161 (352)
..+.+.+. .. .. ..+|++++.++.++..++... +++++ ++.+|.... ..+.+.+
T Consensus 78 -~tv~~nl~----~~-----------~~-~~LS~G~~~rv~laral~~~p---~~lllDEPt~~LD~~~~--~~l~~~l 134 (166)
T cd03223 78 -GTLREQLI----YP-----------WD-DVLSGGEQQRLAFARLLLHKP---KFVFLDEATSALDEESE--DRLYQLL 134 (166)
T ss_pred -ccHHHHhh----cc-----------CC-CCCCHHHHHHHHHHHHHHcCC---CEEEEECCccccCHHHH--HHHHHHH
Confidence 01122221 00 12 378999999999988887763 44444 477776544 4444443
No 361
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.67 E-value=1.2e-07 Score=79.19 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=31.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 26 l~~~s~~i~--~Ge~~~i~G~nGsGKSTLl~~i~Gl~~----p~~G~i~ 68 (228)
T PRK10584 26 LTGVELVVK--RGETIALIGESGSGKSTLLAILAGLDD----GSSGEVS 68 (228)
T ss_pred EeccEEEEc--CCCEEEEECCCCCCHHHHHHHHHcCCC----CCCeeEE
Confidence 344444443 458999999999999999999999865 4455443
No 362
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.67 E-value=7.5e-08 Score=82.85 Aligned_cols=59 Identities=31% Similarity=0.356 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCC-----CCCcc-eeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVT-KTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-----~~~~t-~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
..++++|++|+|||||+|+|+|......+.. .|..| +.... +.. . ....++||||+.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~-~-~~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPL-P-GGGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEc-C-CCCEEEECCCCCcc
Confidence 6899999999999999999999865433322 12222 22222 222 1 12369999999653
No 363
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.67 E-value=1e-07 Score=78.74 Aligned_cols=37 Identities=32% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++..+... ++..++|+|+||+|||||+++|+|...
T Consensus 15 ~l~~is~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 15 ALDDLNLDIA--DGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred eeeceEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444444443 447899999999999999999999865
No 364
>PTZ00099 rab6; Provisional
Probab=98.66 E-value=4.6e-07 Score=72.18 Aligned_cols=114 Identities=19% Similarity=0.149 Sum_probs=69.6
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
..+.||||||... +.......+.++|++++|+|++++-+-.. ..++..+....+.. .|++||.||+
T Consensus 29 v~l~iwDt~G~e~-----------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~--~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQER-----------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD--VIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChHH-----------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECc
Confidence 4678999999432 22333345579999999999984333222 23444444433333 3889999999
Q ss_pred CCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|+........++. ..+....+..+ .++||+++.++.++++.+.+.++.
T Consensus 96 DL~~~~~v~~~e~---------~~~~~~~~~~~------~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 96 DLGDLRKVTYEEG---------MQKAQEYNTMF------HETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccccccCCCHHHH---------HHHHHHcCCEE------EEEECCCCCCHHHHHHHHHHHHHh
Confidence 9864310112211 12222223322 257889999999999999887754
No 365
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=7.4e-08 Score=81.20 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 16 ~l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 16 ALKDVSLSIN--PGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EEecceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3444455544 347999999999999999999999865
No 366
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.66 E-value=3.7e-08 Score=81.98 Aligned_cols=133 Identities=22% Similarity=0.225 Sum_probs=54.0
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCH-HHHHH--HHHHHHhhcccccceEEEEEeC
Q 018636 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-EEETA--VHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 70 ~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~--l~~~~~~~~~~~~~~~ilv~nk 146 (352)
.+.++||||..+.-. .+.....+...+.. ...-++++++|.. .++. ..... +-.+..++.-+. |.+.|+||
T Consensus 92 ~y~l~DtPGQiElf~-~~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~l--P~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-HSDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLEL--PHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHH-HSHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHTS--EEEEEE--
T ss_pred cEEEEeCCCCEEEEE-echhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCCC--CEEEeeec
Confidence 578999999544211 11122333333332 3455788888887 4332 22111 111111111122 99999999
Q ss_pred CCCCCcchh----------cHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 147 GDDLEDHEK----------TLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 147 ~D~~~~~~~----------~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+|+.+.... .+...+..........+......-. ......+.|+.++.++.+|+..|++.+.
T Consensus 166 ~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 166 IDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFG-LVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCS-SS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred cCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcC-CCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 999873101 1111111000011112222221111 1112235677778899999999888753
No 367
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=1.3e-07 Score=75.67 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||+++|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999999865
No 368
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.66 E-value=5.9e-08 Score=80.33 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 19 l~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 61 (216)
T TIGR00960 19 LDNLNFHIT--KGEMVFLVGHSGAGKSTFLKLILGIEK----PTRGKIR 61 (216)
T ss_pred EEeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 344444443 447999999999999999999999865 4455443
No 369
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.66 E-value=7.2e-08 Score=79.71 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=32.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++.++... .+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 17 il~~is~~i~--~G~~~~l~G~nGsGKSTLl~~i~Gl~~----~~~G~i~ 60 (214)
T TIGR02673 17 ALHDVSLHIR--KGEFLFLTGPSGAGKTTLLKLLYGALT----PSRGQVR 60 (214)
T ss_pred eecceeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 3444455544 347999999999999999999999865 4455443
No 370
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.66 E-value=9e-08 Score=85.39 Aligned_cols=44 Identities=25% Similarity=0.263 Sum_probs=32.4
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 18 vl~~vsl~i~--~Ge~~~l~G~nGsGKSTLL~~iaGl~~----p~~G~I~ 61 (369)
T PRK11000 18 ISKDINLDIH--EGEFVVFVGPSGCGKSTLLRMIAGLED----ITSGDLF 61 (369)
T ss_pred EEeeeEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEE
Confidence 3344444444 347999999999999999999999876 5555443
No 371
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.65 E-value=1.4e-07 Score=76.55 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=64.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCC--cccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
+..+..+... ++..++|+|+||+|||||+++|+|.. . +..|.+...............-.++.+.+.+....
T Consensus 24 ~l~~~~~~i~--~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~----~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (194)
T cd03213 24 LLKNVSGKAK--PGELTAIMGPSGAGKSTLLNALAGRRTGL----GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTL 97 (194)
T ss_pred ceecceEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCCCC----CCceEEEECCEeCchHhhhheEEEccCcccCCCCC
Confidence 4444445444 45899999999999999999999986 5 45554433221110000011112233444443311
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCc
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~ 152 (352)
.+.+.+..... . . .+|.+++.++.++..++... +++++ ++.+|....
T Consensus 98 ----t~~~~i~~~~~-----~---------~-~LS~G~~qrv~laral~~~p---~illlDEP~~~LD~~~~ 147 (194)
T cd03213 98 ----TVRETLMFAAK-----L---------R-GLSGGERKRVSIALELVSNP---SLLFLDEPTSGLDSSSA 147 (194)
T ss_pred ----cHHHHHHHHHH-----h---------c-cCCHHHHHHHHHHHHHHcCC---CEEEEeCCCcCCCHHHH
Confidence 11222211100 0 0 67899999999888887652 34444 366665433
No 372
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.64 E-value=1.8e-07 Score=78.72 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~----p~~G~i~~ 58 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK----PDEGDIEI 58 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----CCCCeEEE
Confidence 567999999999999999999999876 55555443
No 373
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.64 E-value=1.8e-07 Score=77.53 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=32.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 19 il~~~s~~i~--~G~~~~l~G~nGsGKSTLl~~i~Gl~~----~~~G~i~ 62 (218)
T cd03255 19 ALKGVSLSIE--KGEFVAIVGPSGSGKSTLLNILGGLDR----PTSGEVR 62 (218)
T ss_pred EEeeeEEEEc--CCCEEEEEcCCCCCHHHHHHHHhCCcC----CCceeEE
Confidence 3444444444 347999999999999999999999865 4555443
No 374
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=9.4e-08 Score=84.47 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=68.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCce-EEEEeCCCCCCCCCC-
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFDLSAG- 85 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~lvDtpG~~~~~~~- 85 (352)
++..+... .+..++|+|+||||||||+++|+|... +..|.+..............+. .++.+.+.++....-
T Consensus 23 ~~isl~i~--~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 23 DNLNLTIK--QGTMVTLLGPSGCGKTTVLRLVAGLEK----PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred eeeEEEEc--CCCEEEEECCCCCcHHHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 34344443 347999999999999999999999887 5555544332111000001111 234444444321110
Q ss_pred -------------cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCC
Q 018636 86 -------------SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGD 148 (352)
Q Consensus 86 -------------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D 148 (352)
..+..+.+...+.. -+...+ .......+|++++.++.+.+.+... |-+++ ++.+|
T Consensus 97 eNi~~~l~~~~~~~~~~~~~v~~~l~~--~gl~~~--~~r~~~~LSgGq~QRVaLARaL~~~----P~lLLLDEP~s~LD 168 (351)
T PRK11432 97 ENVGYGLKMLGVPKEERKQRVKEALEL--VDLAGF--EDRYVDQISGGQQQRVALARALILK----PKVLLFDEPLSNLD 168 (351)
T ss_pred HHHHHHHhHcCCCHHHHHHHHHHHHHH--cCCchh--hcCChhhCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCC
Confidence 11111122222211 122211 1111248999999999999998876 55555 46666
Q ss_pred CCCc
Q 018636 149 DLED 152 (352)
Q Consensus 149 ~~~~ 152 (352)
....
T Consensus 169 ~~~r 172 (351)
T PRK11432 169 ANLR 172 (351)
T ss_pred HHHH
Confidence 5433
No 375
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.64 E-value=1.4e-07 Score=79.64 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=29.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 17 il~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 17 ALKNINLNIN--PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred eeecceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4445455544 347999999999999999999999865
No 376
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.64 E-value=5.5e-08 Score=79.80 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 16 l~~v~~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 58 (205)
T cd03226 16 LDDLSLDLY--AGEIIALTGKNGAGKTTLAKILAGLIK----ESSGSIL 58 (205)
T ss_pred eeeeeEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEE
Confidence 344444443 347999999999999999999999866 5555443
No 377
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.64 E-value=8.5e-08 Score=83.62 Aligned_cols=63 Identities=27% Similarity=0.325 Sum_probs=44.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 86 (352)
..+++|||-+|+|||||||+|+|......+..+| .|...+... -+..+.++||||+.......
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG-~Tk~~q~i~----~~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPG-TTKGIQWIK----LDDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCc-eecceEEEE----cCCCeEEecCCCcCCCCccc
Confidence 3789999999999999999999998744444442 233322221 24458899999998765333
No 378
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=1.8e-07 Score=80.10 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 40 l~~is~~i~--~Ge~~~l~G~nGsGKSTLl~~L~Gl~~----p~~G~i~ 82 (269)
T cd03294 40 VNDVSLDVR--EGEIFVIMGLSGSGKSTLLRCINRLIE----PTSGKVL 82 (269)
T ss_pred eeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEE
Confidence 334444443 458999999999999999999999876 4445443
No 379
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.63 E-value=1.3e-07 Score=83.63 Aligned_cols=134 Identities=15% Similarity=0.096 Sum_probs=72.1
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-Eee------CCceEEEEeCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLK------DGQVVNVIDTPG 78 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~------~~~~~~lvDtpG 78 (352)
..++.++... .+..++|+|+||||||||+++|+|... ++.|.+......... ... ...-.++.+.++
T Consensus 8 ~l~~vs~~i~--~Gei~~l~G~sGsGKSTLLr~L~Gl~~----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 8 GVNDADLAIA--KGEIFVIMGLSGSGKSTTVRMLNRLIE----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred eEEeeEEEEc--CCCEEEEECCCCChHHHHHHHHhCCCC----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 3344445544 348999999999999999999999877 555654443221110 000 112234556666
Q ss_pred CCCCCCCcHHH--------------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE-
Q 018636 79 LFDLSAGSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV- 143 (352)
Q Consensus 79 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv- 143 (352)
++....-.+.+ ...+...+.. -+.+. +.......+|++++.++.++..+.... +++++
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~--vgL~~--~~~~~p~~LSGGq~QRV~lARAL~~~p---~iLLlD 154 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKL--VGLEE--YEHRYPDELSGGMQQRVGLARALAAEP---DILLMD 154 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cCCch--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEe
Confidence 65422111111 1111111111 12211 111222479999999999999987763 44444
Q ss_pred --EeCCCCCCc
Q 018636 144 --FTGGDDLED 152 (352)
Q Consensus 144 --~nk~D~~~~ 152 (352)
++-+|....
T Consensus 155 EP~saLD~~~r 165 (363)
T TIGR01186 155 EAFSALDPLIR 165 (363)
T ss_pred CCcccCCHHHH
Confidence 466665433
No 380
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=4.5e-08 Score=80.62 Aligned_cols=34 Identities=35% Similarity=0.366 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL----PDSGEVL 58 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 457899999999999999999999865 4445443
No 381
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.63 E-value=9.6e-08 Score=73.47 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=60.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE----------EeeCCc----eEEEEeCCCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----------VLKDGQ----VVNVIDTPGLFDLS 83 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----------~~~~~~----~~~lvDtpG~~~~~ 83 (352)
.+.+++|+|++|+|||||+|.|+|-.. |..|.+.....-... .+ +.. ++++-...|++-..
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~----P~~G~i~i~g~d~t~~~P~~RPVSmlF-QEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFET----PASGEILINGVDHTASPPAERPVSMLF-QENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccC----CCCceEEEcCeecCcCCcccCChhhhh-hccccchhhhhhhhhcccCCc
Confidence 347999999999999999999999877 555544332211111 11 111 12222222332211
Q ss_pred --CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 84 --AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
.-+..-.+.+...+.. -+...++- ..-..+|++++.++.+.+.+.... |++++
T Consensus 99 ~LkL~a~~r~~v~~aa~~--vGl~~~~~--RLP~~LSGGqRQRvALARclvR~~---PilLL 153 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQ--VGLAGFLK--RLPGELSGGQRQRVALARCLVREQ---PILLL 153 (231)
T ss_pred ccccCHHHHHHHHHHHHH--hChhhHhh--hCccccCchHHHHHHHHHHHhccC---CeEEe
Confidence 1111112223322221 13333322 222478899999988888776543 77775
No 382
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.63 E-value=4.5e-07 Score=73.66 Aligned_cols=44 Identities=25% Similarity=0.201 Sum_probs=32.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
..+..+... .+..|+|+|++|||||||+|+|.|-.. |+.|.+..
T Consensus 21 L~~v~l~i~--~Ge~vaI~GpSGSGKSTLLniig~ld~----pt~G~v~i 64 (226)
T COG1136 21 LKDVNLEIE--AGEFVAIVGPSGSGKSTLLNLLGGLDK----PTSGEVLI 64 (226)
T ss_pred cccceEEEc--CCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEE
Confidence 444444444 448999999999999999999998887 55554443
No 383
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=2.2e-07 Score=77.84 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 20 il~~~s~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 64 (233)
T cd03258 20 ALKDVSLSVP--KGEIFGIIGRSGAGKSTLIRCINGLER----PTSGSVLV 64 (233)
T ss_pred eeecceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 3444445544 448999999999999999999999876 55555443
No 384
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1e-06 Score=79.00 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..|+|||++|+||||||++|..... .......|++|+.. ...+.++++.+|. | ...+.....
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvs-------gK~RRiTflEcp~--D--------l~~miDvaK 132 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVS-------GKTRRITFLECPS--D--------LHQMIDVAK 132 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEee-------cceeEEEEEeChH--H--------HHHHHhHHH
Confidence 6788999999999999999975422 00112234444321 1356788999983 2 222332222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
-+|.+++++|+.-.+.-+...+|..+... |-+ .++-|+||+|+...+ ..|....++
T Consensus 133 ----IaDLVlLlIdgnfGfEMETmEFLnil~~H-GmP---rvlgV~ThlDlfk~~-stLr~~KKr 188 (1077)
T COG5192 133 ----IADLVLLLIDGNFGFEMETMEFLNILISH-GMP---RVLGVVTHLDLFKNP-STLRSIKKR 188 (1077)
T ss_pred ----hhheeEEEeccccCceehHHHHHHHHhhc-CCC---ceEEEEeecccccCh-HHHHHHHHH
Confidence 35899999998766655666666665553 322 688889999998652 445544443
No 385
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.62 E-value=9.2e-08 Score=78.14 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=31.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+.+++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 l~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (201)
T cd03231 16 FSGLSFTLA--AGEALQVTGPNGSGKTTLLRILAGLSP----PLAGRVL 58 (201)
T ss_pred eccceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 344444443 458999999999999999999999875 4455443
No 386
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.62 E-value=5.5e-08 Score=84.64 Aligned_cols=141 Identities=12% Similarity=0.042 Sum_probs=72.8
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~ 83 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... ++.|.+............ ...-.++.+.+.++...
T Consensus 8 ~l~~vs~~i~--~Ge~~~l~G~NGaGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 8 AVDGVNFKVR--EGEVFGFLGPNGAGKTTTIRMLTTLLR----PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred EEeeeeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 3444445544 347999999999999999999999876 555554432211000000 00112344555544321
Q ss_pred CCcHHH--------------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----Ee
Q 018636 84 AGSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FT 145 (352)
Q Consensus 84 ~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~n 145 (352)
...+.+ ...+...+... +... +....-..+|++++.++.++..+... |-+++ ++
T Consensus 82 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYGLPKDEAEERAEELLELF--ELGE--AADRPVGTYSGGMRRRLDIAASLIHQ----PDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChh--HhCCchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCc
Confidence 111111 00111111110 1110 00111147999999999999998886 44544 47
Q ss_pred CCCCCCcchhcHHHHhc
Q 018636 146 GGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~ 162 (352)
.+|.... ..+.+.+.
T Consensus 154 gLD~~~~--~~l~~~l~ 168 (302)
T TIGR01188 154 GLDPRTR--RAIWDYIR 168 (302)
T ss_pred CCCHHHH--HHHHHHHH
Confidence 7776544 44444443
No 387
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.62 E-value=2.6e-07 Score=76.82 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=31.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 21 l~~isl~i~--~G~~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~ 63 (221)
T TIGR02211 21 LKGVSLSIG--KGEIVAIVGSSGSGKSTLLHLLGGLDN----PTSGEVL 63 (221)
T ss_pred EeeeEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 344444443 447999999999999999999999876 4455443
No 388
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=2.3e-07 Score=76.46 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~----~~~G~i~ 56 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET----PQSGRVL 56 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 457999999999999999999999876 4445443
No 389
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.61 E-value=9.8e-08 Score=83.13 Aligned_cols=143 Identities=17% Similarity=0.079 Sum_probs=72.6
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~ 83 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+........... ....-.++.+.+.+....
T Consensus 19 ~l~~vsl~i~--~Ge~~~l~G~NGaGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (303)
T TIGR01288 19 VVNDLSFTIA--RGECFGLLGPNGAGKSTIARMLLGMIS----PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92 (303)
T ss_pred EEcceeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCC
Confidence 3444445544 348999999999999999999999865 45554443221100000 001112334444443211
Q ss_pred CCcHHH--------------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeC
Q 018636 84 AGSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTG 146 (352)
Q Consensus 84 ~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk 146 (352)
...+.+ ...+...+.. -+... +....-..+|++++.++.++..+.... +++++ ++.
T Consensus 93 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~--~~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDEPt~g 165 (303)
T TIGR01288 93 TVRENLLVFGRYFGMSTREIEAVIPSLLEF--ARLES--KADVRVALLSGGMKRRLTLARALINDP---QLLILDEPTTG 165 (303)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--CCChh--HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCCcC
Confidence 111111 0011111110 01110 000111479999999999999988763 34444 577
Q ss_pred CCCCCcchhcHHHHhcc
Q 018636 147 GDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~ 163 (352)
+|.... ..+.+.+..
T Consensus 166 LD~~~~--~~l~~~l~~ 180 (303)
T TIGR01288 166 LDPHAR--HLIWERLRS 180 (303)
T ss_pred CCHHHH--HHHHHHHHH
Confidence 776644 555554443
No 390
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.61 E-value=1.4e-07 Score=73.70 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~ 79 (352)
...+|+++|.+|+|||||+|.|.+.......+..+ .|..... +. .+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~-~t~~~~~--~~--~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPG-YTKGEQL--VK--ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCC-eeeeeEE--EE--cCCCEEEEECcCC
Confidence 34689999999999999999999876544333333 2322221 11 2346889999995
No 391
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.61 E-value=1.2e-07 Score=76.85 Aligned_cols=45 Identities=24% Similarity=0.187 Sum_probs=33.2
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+.++.++... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 6 ~il~~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~ 50 (190)
T TIGR01166 6 EVLKGLNFAAE--RGEVLALLGANGAGKSTLLLHLNGLLR----PQSGAVL 50 (190)
T ss_pred ceecceeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceeEE
Confidence 34455555554 347999999999999999999999865 4455444
No 392
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.61 E-value=1.1e-07 Score=78.51 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 16 il~~vs~~i~--~G~~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 60 (211)
T cd03225 16 ALDDISLTIK--KGEFVLIVGPNGSGKSTLLRLLNGLLG----PTSGEVLV 60 (211)
T ss_pred eecceEEEEc--CCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEE
Confidence 3445555544 347999999999999999999999876 55555443
No 393
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.60 E-value=1.4e-06 Score=64.70 Aligned_cols=119 Identities=21% Similarity=0.169 Sum_probs=73.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh-CCCcccccCCCCCccee-eEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKT-CEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~-g~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
...+|+++|.-++|||++|.-|+ |.... ......|.. .....++... ...+.+.||.|+.+. . .++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~---~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~---~----~eL 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVP---GTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG---Q----QEL 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCC---CCccccchhhheeEeeecCCChhheEEEeecccccCc---h----hhh
Confidence 45799999999999999997665 54441 111122332 2233333322 346789999998763 1 222
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc---cccceEEEEEeCCCCCCc
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK---NVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~ilv~nk~D~~~~ 152 (352)
-+.. +.-+|+|++|++.. +.....++++++.-+.+ ....|++++.|+.|....
T Consensus 78 prhy---~q~aDafVLVYs~~---d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 78 PRHY---FQFADAFVLVYSPM---DPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred hHhH---hccCceEEEEecCC---CHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 2222 23579999999765 34455566666655422 122389999999998754
No 394
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.60 E-value=8.5e-08 Score=79.23 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=31.5
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 l~~~s~~i~--~G~~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (213)
T cd03262 16 LKGIDLTVK--KGEVVVIIGPSGSGKSTLLRCINLLEE----PDSGTII 58 (213)
T ss_pred ecCceEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 334444443 447999999999999999999999865 4455443
No 395
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.60 E-value=2.8e-07 Score=76.98 Aligned_cols=34 Identities=35% Similarity=0.435 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 43 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ----PTSGGVI 43 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 347999999999999999999999876 4555443
No 396
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.60 E-value=1.3e-07 Score=89.30 Aligned_cols=133 Identities=18% Similarity=0.066 Sum_probs=69.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE---------EEEeeCCceEEEEeCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK---------TTVLKDGQVVNVIDTP 77 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~---------~~~~~~~~~~~lvDtp 77 (352)
.++..+..+ .+.+|+|+|++|+|||||++.|+|... +..|.+..+.... .+.+-....+.+-+|-
T Consensus 351 L~~isl~i~--~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI 424 (529)
T TIGR02868 351 LDGVSLDLP--PGERVAILGPSGSGKSTLLMLLTGLLD----PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTV 424 (529)
T ss_pred eecceEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccH
Confidence 334444443 458999999999999999999999876 6666554432110 0000011111111221
Q ss_pred ----CCCCCCCCcHHHHHHHHHH-----HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---Ee
Q 018636 78 ----GLFDLSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FT 145 (352)
Q Consensus 78 ----G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~n 145 (352)
-++....+++++.+.+..+ +.....+.|..+ -+.+..+|++++.++.+++.++.+. +++++ +.
T Consensus 425 ~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~i--ge~G~~LSGGQrQRiaiARall~~~---~iliLDE~TS 499 (529)
T TIGR02868 425 RDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVL--GEGGARLSGGERQRLALARALLADA---PILLLDEPTE 499 (529)
T ss_pred HHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchh--ccccCcCCHHHHHHHHHHHHHhcCC---CEEEEeCCcc
Confidence 1112222333333222211 111111223222 2333579999999999999998863 55554 45
Q ss_pred CCCCC
Q 018636 146 GGDDL 150 (352)
Q Consensus 146 k~D~~ 150 (352)
.+|..
T Consensus 500 aLD~~ 504 (529)
T TIGR02868 500 HLDAG 504 (529)
T ss_pred cCCHH
Confidence 55543
No 397
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=1e-07 Score=84.44 Aligned_cols=138 Identities=11% Similarity=0.088 Sum_probs=70.5
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEeeCCceEEEEeCCCCCCCCC--
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSA-- 84 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~lvDtpG~~~~~~-- 84 (352)
++..+... .+..++|+|+||||||||+++|+|... +..|.+........ .......-.++...+.++....
T Consensus 21 ~~vsl~i~--~Ge~~~llG~sGsGKSTLLr~iaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 21 KGIDLDVA--DGEFIVLVGPSGCGKSTLLRMVAGLER----ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred eeeeEEEc--CCCEEEEECCCCCcHHHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 34444443 347899999999999999999999876 55554443221110 0000011112334444332111
Q ss_pred ------------CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCC
Q 018636 85 ------------GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGD 148 (352)
Q Consensus 85 ------------~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D 148 (352)
...+....+...+... +++.+ ....-..+|++++.++.++..+... |-+++ ++.+|
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~--~~~~~~~LSgGq~QRvalARAL~~~----P~llLLDEP~s~LD 166 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARIL--ELEPL--LDRKPRELSGGQRQRVAMGRAIVRE----PAVFLFDEPLSNLD 166 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHc--CChhH--hhCChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCC
Confidence 0111111122222111 22211 1111147999999999999998776 55555 46666
Q ss_pred CCCcchhcHHHHh
Q 018636 149 DLEDHEKTLEDFL 161 (352)
Q Consensus 149 ~~~~~~~~l~~~l 161 (352)
.... ..+.+.+
T Consensus 167 ~~~r--~~l~~~l 177 (356)
T PRK11650 167 AKLR--VQMRLEI 177 (356)
T ss_pred HHHH--HHHHHHH
Confidence 5433 4444333
No 398
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.60 E-value=1.2e-06 Score=76.20 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=67.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccc------ccCCCCC-----------cceeeEeEEEE----------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFK------ASAGSSG-----------VTKTCEMKTTV---------------- 64 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~------~~~~~~~-----------~t~~~~~~~~~---------------- 64 (352)
.+..|+|+|+||+||||++..|++..... ....... ......+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887542200 0000000 00001111100
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc---c-cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceE
Q 018636 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM---A-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 65 ~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
...+..+.||||||.... +..+..++...... . ...++..++|++++... ........+...++ ..
T Consensus 193 ~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~-----~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVG-----LT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCC-----CC
Confidence 013456889999997653 23333444443321 1 23567889999987322 22222233322222 57
Q ss_pred EEEEeCCCCCCc
Q 018636 141 IVVFTGGDDLED 152 (352)
Q Consensus 141 ilv~nk~D~~~~ 152 (352)
-+|+||+|....
T Consensus 263 giIlTKlD~t~~ 274 (318)
T PRK10416 263 GIILTKLDGTAK 274 (318)
T ss_pred EEEEECCCCCCC
Confidence 789999996644
No 399
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.60 E-value=3.1e-07 Score=77.14 Aligned_cols=36 Identities=25% Similarity=0.143 Sum_probs=28.2
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 16 l~~vsl~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 16 LDDVSFSVR--PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred ecCceEEec--CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 344444443 447999999999999999999999765
No 400
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.59 E-value=1.9e-07 Score=76.56 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=77.8
Q ss_pred CCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE----------EeeCCceEEEEeCCC
Q 018636 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----------VLKDGQVVNVIDTPG 78 (352)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----------~~~~~~~~~lvDtpG 78 (352)
+.++.-|.+ .+++++|.||+||||+++.|+|... |++|.+.+......- .+-..+.-..||.|-
T Consensus 42 disf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~----p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 42 DISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLL----PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred eeeeecCCC--cEEEEEcCCCCcchhhHHHHhCccc----cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 334555544 8999999999999999999999987 666655443221110 000122335789984
Q ss_pred CCCCC-------CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE----eCC
Q 018636 79 LFDLS-------AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF----TGG 147 (352)
Q Consensus 79 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~----nk~ 147 (352)
..+.. .++....+.+...... -+++.++- .++ ..+|.+++.+.+++..++.+ |-++.+ --+
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~ei--Ldl~~~lk-~~v-r~LSlGqRmraeLaaaLLh~----p~VLfLDEpTvgL 187 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEI--LDLEGFLK-WPV-RKLSLGQRMRAELAAALLHP----PKVLFLDEPTVGL 187 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHH--hcchhhhh-hhh-hhccchHHHHHHHHHHhcCC----CcEEEecCCccCc
Confidence 33211 1122222222211110 12222222 122 48899999999999998887 555553 334
Q ss_pred CCCCcchhcHHHHhcc
Q 018636 148 DDLEDHEKTLEDFLGH 163 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~ 163 (352)
|.... ..+.+|++.
T Consensus 188 DV~aq--~~ir~Flke 201 (325)
T COG4586 188 DVNAQ--ANIREFLKE 201 (325)
T ss_pred chhHH--HHHHHHHHH
Confidence 44433 556666554
No 401
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.59 E-value=9.2e-08 Score=91.29 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=75.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeC-CceEEEEeCC------
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKD-GQVVNVIDTP------ 77 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~lvDtp------ 77 (352)
+.++.+..-+. +.+|+|+|++|||||||++.|+|-.. |..|.+..+..-. .+.... .+.+.+|..-
T Consensus 488 vL~~isL~I~~--Ge~vaIvG~SGsGKSTL~KLL~gly~----p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g 561 (709)
T COG2274 488 VLEDLSLEIPP--GEKVAIVGRSGSGKSTLLKLLLGLYK----PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG 561 (709)
T ss_pred hhhceeEEeCC--CCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC
Confidence 44555555554 48999999999999999999999877 6666554432111 000000 1233333222
Q ss_pred ------CCCCCCCCcHHHHHHHHHHHhcccCCccEEE--------E-EEecCCCCCHHHHHHHHHHHHhhcccccceEEE
Q 018636 78 ------GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFL--------V-VFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (352)
Q Consensus 78 ------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~-v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~il 142 (352)
-+.++..+.++ +..++..+ ++|.++ . |-..+..+|++++.++.+++.+..++ ++++
T Consensus 562 SI~eNi~l~~p~~~~e~----i~~A~~~a--g~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P---~ILl 632 (709)
T COG2274 562 SIRENIALGNPEATDEE----IIEAAQLA--GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP---KILL 632 (709)
T ss_pred cHHHHHhcCCCCCCHHH----HHHHHHHh--CcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC---CEEE
Confidence 22333333333 33332222 222222 2 22444689999999999999998873 4444
Q ss_pred E---EeCCCCCCc
Q 018636 143 V---FTGGDDLED 152 (352)
Q Consensus 143 v---~nk~D~~~~ 152 (352)
+ ++.+|..+.
T Consensus 633 LDEaTSaLD~~sE 645 (709)
T COG2274 633 LDEATSALDPETE 645 (709)
T ss_pred EeCcccccCHhHH
Confidence 4 577776544
No 402
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=2.4e-07 Score=77.99 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=28.2
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 18 l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 18 LDDVSLDIP--SGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred eeeeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444443 347999999999999999999999865
No 403
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.59 E-value=2.4e-07 Score=81.01 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~lvDtpG~~~~~ 83 (352)
.+++|||.+++|||||+|+|++....+.... ...|.......+.+++. ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y-pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP-PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC-CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6899999999999999999998764122111 11223333333333222 357899999998754
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
.....+...+...+ ..+|+++.|+++.
T Consensus 82 s~g~Glgn~fL~~i----r~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANI----REVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHH----HhCCEEEEEEeCC
Confidence 33333444444444 4779999999874
No 404
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.59 E-value=7.7e-08 Score=78.83 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
..+..+... .+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 17 l~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~v~~ 60 (204)
T PRK13538 17 FSGLSFTLN--AGELVQIEGPNGAGKTSLLRILAGLAR----PDAGEVLW 60 (204)
T ss_pred EecceEEEC--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 344444544 347999999999999999999999876 55554443
No 405
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.59 E-value=1.2e-07 Score=82.56 Aligned_cols=140 Identities=16% Similarity=0.057 Sum_probs=73.3
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-Ee-eCCceEEEEeCCCCCCCCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VL-KDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~-~~~~~~~lvDtpG~~~~~~ 84 (352)
.++..+... .+..++|+|+||+|||||+++|+|... ++.|.+......... .. ....-.++.+.++++....
T Consensus 23 l~~vsl~i~--~Gei~gllGpNGaGKSTLl~~l~Gl~~----p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 23 VDGLSFHVQ--RGECFGLLGPNGAGKTTTLRMLLGLTH----PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred EecceEEEe--CCcEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 334444443 347899999999999999999999876 555554432211000 00 0011234556666554211
Q ss_pred CcHHH--------------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeC
Q 018636 85 GSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTG 146 (352)
Q Consensus 85 ~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk 146 (352)
..+.+ ...+...+.. -+.... .-..+ ..+|.+.+.++.++..+... |-+++ ++.
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~-~~~~~-~~LS~G~~qrl~la~aL~~~----P~lllLDEPt~g 168 (306)
T PRK13537 97 VRENLLVFGRYFGLSAAAARALVPPLLEF--AKLENK-ADAKV-GELSGGMKRRLTLARALVND----PDVLVLDEPTTG 168 (306)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHH--cCCchH-hcCch-hhCCHHHHHHHHHHHHHhCC----CCEEEEeCCCcC
Confidence 11111 0011111110 011000 00011 47999999999999998886 45555 477
Q ss_pred CCCCCcchhcHHHHhc
Q 018636 147 GDDLEDHEKTLEDFLG 162 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~ 162 (352)
+|.... ..+.+.+.
T Consensus 169 LD~~~~--~~l~~~l~ 182 (306)
T PRK13537 169 LDPQAR--HLMWERLR 182 (306)
T ss_pred CCHHHH--HHHHHHHH
Confidence 776544 44544444
No 406
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.59 E-value=1e-07 Score=79.02 Aligned_cols=45 Identities=22% Similarity=0.133 Sum_probs=32.9
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 20 il~~~sl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~ 64 (218)
T cd03266 20 AVDGVSFTVK--PGEVTGLLGPNGAGKTTTLRMLAGLLE----PDAGFATV 64 (218)
T ss_pred eecceEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCcC----CCCceEEE
Confidence 3444444444 347999999999999999999999865 55555443
No 407
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.58 E-value=2.8e-07 Score=74.37 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=84.2
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
|...+.++.++..+.. ...+++|+||+||||++++|+|-.. ++.|.+++.......... ++--++-..-|++.
T Consensus 13 g~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle----~~~G~I~~~g~~~~~~~~-~rIGyLPEERGLy~ 85 (300)
T COG4152 13 GDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLE----PTEGEITWNGGPLSQEIK-NRIGYLPEERGLYP 85 (300)
T ss_pred CceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCC----ccCceEEEcCcchhhhhh-hhcccChhhhccCc
Confidence 4455566667777654 8899999999999999999999877 666666654432222110 11112222333322
Q ss_pred C--------------CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----
Q 018636 82 L--------------SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---- 143 (352)
Q Consensus 82 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---- 143 (352)
- .....++...+..++. ..++.-+-.+--..+|.+...-+.++..+... |-+++
T Consensus 86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLe----r~~i~~~~~~kIk~LSKGnqQKIQfisaviHe----PeLlILDEP 157 (300)
T COG4152 86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLE----RLEIVGKKTKKIKELSKGNQQKIQFISAVIHE----PELLILDEP 157 (300)
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHH----hccccccccchHHHhhhhhhHHHHHHHHHhcC----CCEEEecCC
Confidence 1 1122333444444443 22333333332246777778888888887776 66666
Q ss_pred EeCCCCCCcchhcHHHHhcc
Q 018636 144 FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~ 163 (352)
++-+|-... +.|.+.+.+
T Consensus 158 FSGLDPVN~--elLk~~I~~ 175 (300)
T COG4152 158 FSGLDPVNV--ELLKDAIFE 175 (300)
T ss_pred ccCCChhhH--HHHHHHHHH
Confidence 477777655 666655544
No 408
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=3.7e-07 Score=76.48 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 25 l~~isl~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~ 68 (233)
T PRK11629 25 LHNVSFSIG--EGEMMAIVGSSGSGKSTLLHLLGGLDT----PTSGDVIF 68 (233)
T ss_pred EEeeEEEEc--CCcEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 344444444 347999999999999999999999865 45554443
No 409
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.57 E-value=1.4e-07 Score=83.43 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=67.4
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-EeeCCceEEEEeCCCCCCCCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~lvDtpG~~~~~~~~ 86 (352)
++..+... .+..++|+|+||||||||+++|+|... +..|.+......... ......-.++.+.+.++....-.
T Consensus 21 ~~vs~~i~--~Ge~~~l~GpsGsGKSTLLr~iaGl~~----p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 21 KDISLSVK--KGEFVCLLGPSGCGKTTLLRIIAGLER----QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred EeeEEEEc--CCCEEEEECCCCCCHHHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 34444443 347999999999999999999999876 555554433221100 00001122344444444321111
Q ss_pred H--------------HHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCC
Q 018636 87 E--------------FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGD 148 (352)
Q Consensus 87 ~--------------~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D 148 (352)
+ +....+...+... +.+.+ ....-..+|++++.++.+...+... |-+++ ++.+|
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~l--~L~~~--~~~~~~~LSgGq~QRvaLARaL~~~----P~llLLDEP~s~LD 166 (353)
T TIGR03265 95 DNIAYGLKNRGMGRAEVAERVAELLDLV--GLPGS--ERKYPGQLSGGQQQRVALARALATS----PGLLLLDEPLSALD 166 (353)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCCch--hhCChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCC
Confidence 1 1111121111111 22211 1111147999999999999998876 55555 35555
Q ss_pred CC
Q 018636 149 DL 150 (352)
Q Consensus 149 ~~ 150 (352)
..
T Consensus 167 ~~ 168 (353)
T TIGR03265 167 AR 168 (353)
T ss_pred HH
Confidence 44
No 410
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.57 E-value=1.3e-07 Score=83.20 Aligned_cols=142 Identities=17% Similarity=0.071 Sum_probs=73.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE-Ee-eCCceEEEEeCCCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VL-KDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~-~~~~~~~lvDtpG~~~~~ 83 (352)
+.++.++... .+..++|+|+||+|||||+++|+|... ++.|.+......... .. ....-.++.+.+.++...
T Consensus 56 ~l~~is~~i~--~Gei~gLlGpNGaGKSTLl~~L~Gl~~----p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 129 (340)
T PRK13536 56 VVNGLSFTVA--SGECFGLLGPNGAGKSTIARMILGMTS----PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEF 129 (340)
T ss_pred EEeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHHcCCC----CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCC
Confidence 3444445544 348999999999999999999999876 555554432211000 00 001122344555554321
Q ss_pred CCcHHHH--------------HHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----Ee
Q 018636 84 AGSEFVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FT 145 (352)
Q Consensus 84 ~~~~~~~--------------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~n 145 (352)
...+.+. ..+..++.. -+... .....-..+|++.+.++.++..+... |-+++ ++
T Consensus 130 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~--~~L~~--~~~~~~~~LS~G~kqrv~lA~aL~~~----P~lLiLDEPt~ 201 (340)
T PRK13536 130 TVRENLLVFGRYFGMSTREIEAVIPSLLEF--ARLES--KADARVSDLSGGMKRRLTLARALIND----PQLLILDEPTT 201 (340)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--cCCch--hhCCChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCC
Confidence 1111110 000011100 01100 00001147999999999999998876 44555 47
Q ss_pred CCCCCCcchhcHHHHhcc
Q 018636 146 GGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~ 163 (352)
.+|.... ..+.+.+..
T Consensus 202 gLD~~~r--~~l~~~l~~ 217 (340)
T PRK13536 202 GLDPHAR--HLIWERLRS 217 (340)
T ss_pred CCCHHHH--HHHHHHHHH
Confidence 7775544 444444433
No 411
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.57 E-value=1.7e-07 Score=77.04 Aligned_cols=44 Identities=25% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 13 ~l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 56 (206)
T TIGR03608 13 ILDDLNLTIE--KGKMYAIIGESGSGKSTLLNIIGLLEK----FDSGQVY 56 (206)
T ss_pred EEeceEEEEe--CCcEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEE
Confidence 3344444444 347999999999999999999999865 4445443
No 412
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.57 E-value=3.2e-07 Score=74.05 Aligned_cols=72 Identities=24% Similarity=0.174 Sum_probs=43.5
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..+.+|||||... .+.....++..++... ..+-+++|++++.. ..+...+..+...++ ..-+|+||+|
T Consensus 84 ~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc-----CceEEEEeec
Confidence 4688999999765 2344455555544433 56778888888722 233333344444344 4567789999
Q ss_pred CCCc
Q 018636 149 DLED 152 (352)
Q Consensus 149 ~~~~ 152 (352)
....
T Consensus 152 et~~ 155 (196)
T PF00448_consen 152 ETAR 155 (196)
T ss_dssp SSST
T ss_pred CCCC
Confidence 8755
No 413
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.56 E-value=5.2e-07 Score=74.47 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 56 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIE----PASGSIK 56 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEE
Confidence 457999999999999999999999876 4455443
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.56 E-value=2.6e-07 Score=82.60 Aligned_cols=124 Identities=17% Similarity=0.229 Sum_probs=64.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeE-------------eEEEEe---------------eC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCE-------------MKTTVL---------------KD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~-------------~~~~~~---------------~~ 67 (352)
..+.+|+|||+||+||||++..|++...+..+..... ++.+.. ...+.. ..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 3457999999999999999999887532111111100 111100 000000 02
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
+..+.+|||+|.... +..+..++... .. ....+-.++|++++. ...+.. . +...|.. ....-+|+||+
T Consensus 269 ~~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~--~~~~~~--~-~~~~f~~--~~~~~~I~TKl 336 (420)
T PRK14721 269 GKHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATS--SGDTLD--E-VISAYQG--HGIHGCIITKV 336 (420)
T ss_pred CCCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCC--CHHHHH--H-HHHHhcC--CCCCEEEEEee
Confidence 446789999997652 22334444432 21 123456777787762 122222 1 2222221 11567889999
Q ss_pred CCCCc
Q 018636 148 DDLED 152 (352)
Q Consensus 148 D~~~~ 152 (352)
|....
T Consensus 337 DEt~~ 341 (420)
T PRK14721 337 DEAAS 341 (420)
T ss_pred eCCCC
Confidence 98754
No 415
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.56 E-value=1.2e-06 Score=78.42 Aligned_cols=132 Identities=19% Similarity=0.183 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC----------------------------------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---------------------------------------------- 51 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~---------------------------------------------- 51 (352)
.-.||+|||...+||||.+.+|+....|+-+...
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 3479999999999999999999877666643211
Q ss_pred ------CCcceeeEeEEEEe--eCCceEEEEeCCCCCCCCCCc--HHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH
Q 018636 52 ------SGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE 121 (352)
Q Consensus 52 ------~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~ 121 (352)
++.|+...+....+ ++-..+++||.||+..+...+ .+....+......+..++++|++|+.-+ ..+. +
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDA-E 464 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDA-E 464 (980)
T ss_pred HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccch-h
Confidence 12222222222222 112356899999997643221 2334555555555667999999998755 4433 3
Q ss_pred HHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 122 ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+..+.-+-..+. +..+..|+|+||.|+...
T Consensus 465 RSnVTDLVsq~D-P~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 RSIVTDLVSQMD-PHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhHHHHHHhcC-CCCCeeEEEEeecchhhh
Confidence 333332222221 122389999999998754
No 416
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=2.4e-07 Score=78.16 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 61 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM----PRSGTLNI 61 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 447999999999999999999999865 45554443
No 417
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=2.9e-07 Score=77.60 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=31.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++.++... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 17 l~~is~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 59 (242)
T cd03295 17 VNNLNLEIA--KGEFLVLIGPSGSGKTTTMKMINRLIE----PTSGEIF 59 (242)
T ss_pred eeeeEEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEE
Confidence 344444443 347899999999999999999999865 4455443
No 418
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.56 E-value=4.8e-07 Score=72.66 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 59 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP----PASGEITL 59 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 347899999999999999999999876 55555443
No 419
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.55 E-value=4.9e-08 Score=82.44 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 139 ~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
..++|+||+|+.......++.++.. ++.+. . +-.+.+.|+.++.++++|++++..
T Consensus 232 ADIVVLNKiDLl~~~~~dle~~~~~-----lr~ln---p-----~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 232 ASLMLLNKVDLLPYLNFDVEKCIAC-----AREVN---P-----EIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred CcEEEEEhHHcCcccHHHHHHHHHH-----HHhhC---C-----CCcEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999985311345544443 33222 1 122346688889999999998865
No 420
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.55 E-value=3.1e-07 Score=73.12 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=30.8
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 19 ~~~~~~i~--~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~ 60 (173)
T cd03246 19 RNVSFSIE--PGESLAIIGPSGSGKSTLARLILGLLR----PTSGRVR 60 (173)
T ss_pred eeeEEEEC--CCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEE
Confidence 33344443 347999999999999999999999865 4445433
No 421
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.55 E-value=1.8e-07 Score=77.26 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=32.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... ++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 ~l~~~sl~i~--~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 59 (214)
T cd03292 16 ALDGINISIS--AGEFVFLVGPSGAGKSTLLKLIYKEEL----PTSGTIR 59 (214)
T ss_pred eeeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEE
Confidence 3344444443 347999999999999999999999865 4455443
No 422
>PRK10908 cell division protein FtsE; Provisional
Probab=98.55 E-value=2e-07 Score=77.51 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=31.5
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 18 l~~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 60 (222)
T PRK10908 18 LQGVTFHMR--PGEMAFLTGHSGAGKSTLLKLICGIER----PSAGKIW 60 (222)
T ss_pred EeeeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 334344443 458999999999999999999999875 4555443
No 423
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.55 E-value=2.8e-07 Score=77.18 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=31.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 l~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 58 (232)
T cd03218 16 VNGVSLSVK--QGEIVGLLGPNGAGKTTTFYMIVGLVK----PDSGKIL 58 (232)
T ss_pred eccceeEec--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 344444443 347999999999999999999999876 4555443
No 424
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.55 E-value=2.4e-07 Score=78.59 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=28.6
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 18 ~l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 18 VLHGIDLEVK--PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred eeccceEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3344444443 447899999999999999999999865
No 425
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.55 E-value=1.5e-07 Score=80.64 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=28.3
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 23 l~~vsl~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 23 LRDASFTVP--GGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred EEeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444443 458999999999999999999999865
No 426
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=7.9e-08 Score=79.27 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=27.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+.... + .++|+|+||+|||||+++|+|...
T Consensus 16 l~~vs~~i~~--g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 16 LDGVSLTLGP--G-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred EcceeEEEcC--C-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444455443 4 899999999999999999999765
No 427
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=4.9e-07 Score=75.65 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=32.7
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++..+... ++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 15 il~~i~~~i~--~Ge~~~i~G~nGsGKSTLl~~l~g~~~----~~~G~i~~ 59 (232)
T cd03300 15 ALDGVSLDIK--EGEFFTLLGPSGCGKTTLLRLIAGFET----PTSGEILL 59 (232)
T ss_pred eeccceEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 3344444433 458999999999999999999999876 45554443
No 428
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.54 E-value=4.7e-07 Score=80.42 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~----p~~G~I~ 56 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTR----PQKGRIV 56 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 347999999999999999999999876 4555444
No 429
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=3.8e-07 Score=77.91 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=31.3
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 27 l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 69 (265)
T PRK10575 27 LHPLSLTFP--AGKVTGLIGHNGSGKSTLLKMLGRHQP----PSEGEIL 69 (265)
T ss_pred EeeeeeEEc--CCCEEEEECCCCCCHHHHHHHHcCCCC----CCCCEEE
Confidence 334344443 447999999999999999999999865 4445443
No 430
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=5.1e-07 Score=74.58 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 55 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK----PDGGTIV 55 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 6899999999999999999999875 4445443
No 431
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.54 E-value=2.3e-07 Score=82.68 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=31.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 30 l~~vsl~i~--~Ge~~~LlGpsGsGKSTLLr~IaGl~~----p~~G~I~ 72 (375)
T PRK09452 30 ISNLDLTIN--NGEFLTLLGPSGCGKTTVLRLIAGFET----PDSGRIM 72 (375)
T ss_pred EeeeEEEEe--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEE
Confidence 334444443 347999999999999999999999876 5555443
No 432
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.54 E-value=4.5e-07 Score=77.09 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~----p~~G~I~~ 83 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLS----PTVGKVDR 83 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEE
Confidence 457999999999999999999999876 55555443
No 433
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=4.8e-07 Score=75.74 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||+++|+|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
No 434
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.53 E-value=1.7e-07 Score=77.91 Aligned_cols=45 Identities=29% Similarity=0.278 Sum_probs=32.9
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 36 ~il~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 80 (224)
T cd03220 36 WALKDVSFEVP--RGERIGLIGRNGAGKSTLLRLLAGIYP----PDSGTVT 80 (224)
T ss_pred EEEeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 34444445544 347999999999999999999999765 5555443
No 435
>PLN03073 ABC transporter F family; Provisional
Probab=98.53 E-value=3.5e-07 Score=88.22 Aligned_cols=43 Identities=19% Similarity=0.036 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHhcc
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+|++++.++.++..++.. |-+++ +|++|.... .++.+++..
T Consensus 343 ~~LSgG~k~rv~LA~aL~~~----p~lLlLDEPt~~LD~~~~--~~l~~~L~~ 389 (718)
T PLN03073 343 KTFSGGWRMRIALARALFIE----PDLLLLDEPTNHLDLHAV--LWLETYLLK 389 (718)
T ss_pred hhCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHH--HHHHHHHHH
Confidence 47999999999999998876 55555 599998765 666666654
No 436
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.53 E-value=1.4e-07 Score=84.59 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 19 L~~vs~~i~--~Geiv~liGpNGaGKSTLLk~LaGll~----p~sG~I~ 61 (402)
T PRK09536 19 LDGVDLSVR--EGSLVGLVGPNGAGKTTLLRAINGTLT----PTAGTVL 61 (402)
T ss_pred EEeeEEEEC--CCCEEEEECCCCchHHHHHHHHhcCCC----CCCcEEE
Confidence 344444443 447999999999999999999999866 5555444
No 437
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=5.2e-07 Score=79.80 Aligned_cols=44 Identities=20% Similarity=0.134 Sum_probs=32.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.++.++... .+..++|+|+||||||||+++|+|... +..|.+..
T Consensus 21 l~~vsl~i~--~Gei~~iiG~nGsGKSTLlk~L~Gl~~----p~~G~I~~ 64 (343)
T PRK11153 21 LNNVSLHIP--AGEIFGVIGASGAGKSTLIRCINLLER----PTSGRVLV 64 (343)
T ss_pred EEeeEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEE
Confidence 344444444 447999999999999999999999876 55555443
No 438
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.53 E-value=1.3e-07 Score=82.22 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=69.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCCCCCCcHHH------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFV------ 89 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~------ 89 (352)
.+..++|+|+||+|||||+++|+|... ++.|.+........... ....-.++.+.|.++......+.+
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~----~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~ 102 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLP----PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI 102 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 457999999999999999999999866 55555443321110000 001122344555544321111110
Q ss_pred --------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcH
Q 018636 90 --------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTL 157 (352)
Q Consensus 90 --------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l 157 (352)
...+...+... +.... .......+|.+++.++.++..+.+. |-+++ ++.+|.... ..+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~--gl~~~--~~~~~~~LS~G~~qrv~la~al~~~----p~lliLDEPt~gLD~~~~--~~l 172 (301)
T TIGR03522 103 YGMKGQLLKQRVEEMIELV--GLRPE--QHKKIGQLSKGYRQRVGLAQALIHD----PKVLILDEPTTGLDPNQL--VEI 172 (301)
T ss_pred cCCCHHHHHHHHHHHHHHC--CCchH--hcCchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHH--HHH
Confidence 01111111110 11111 1111147899999999999998887 45555 477776544 444
Q ss_pred HHHhc
Q 018636 158 EDFLG 162 (352)
Q Consensus 158 ~~~l~ 162 (352)
.+.+.
T Consensus 173 ~~~l~ 177 (301)
T TIGR03522 173 RNVIK 177 (301)
T ss_pred HHHHH
Confidence 44444
No 439
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.53 E-value=3.6e-07 Score=80.01 Aligned_cols=122 Identities=20% Similarity=0.156 Sum_probs=65.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc------ccccCCCC---Ccc--------eeeEeEEEE-----------ee--CC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKASAGSS---GVT--------KTCEMKTTV-----------LK--DG 68 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~------~~~~~~~~---~~t--------~~~~~~~~~-----------~~--~~ 68 (352)
..+|+|+|++|+||||++..|++... .-...+.. ... ..+.+.... .. .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 36899999999999999999874321 00000000 000 001111000 00 13
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..+.||||+|... .+.....++...+... .++.+++|++++ .-...-...++.+.. ++ ..-+|+||+|
T Consensus 321 ~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsAT-tk~~d~~~i~~~F~~-~~-----idglI~TKLD 388 (436)
T PRK11889 321 VDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSAS-MKSKDMIEIITNFKD-IH-----IDGIVFTKFD 388 (436)
T ss_pred CCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCc-cChHHHHHHHHHhcC-CC-----CCEEEEEccc
Confidence 4788999999765 2333345555554432 456778888775 111122333333332 12 5678899999
Q ss_pred CCCc
Q 018636 149 DLED 152 (352)
Q Consensus 149 ~~~~ 152 (352)
....
T Consensus 389 ET~k 392 (436)
T PRK11889 389 ETAS 392 (436)
T ss_pred CCCC
Confidence 8754
No 440
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.53 E-value=2.8e-07 Score=81.65 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++..+... .+..++|+|+||||||||+++|+|... +..|.+..
T Consensus 19 ~~isl~i~--~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~i 61 (353)
T PRK10851 19 NDISLDIP--SGQMVALLGPSGSGKTTLLRIIAGLEH----QTSGHIRF 61 (353)
T ss_pred EEeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 34444443 347999999999999999999999876 45554433
No 441
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.53 E-value=6.1e-07 Score=79.79 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~----p~~G~I~ 55 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTR----PDEGEIV 55 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 347899999999999999999999876 4445443
No 442
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.52 E-value=1.9e-07 Score=77.68 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~ 59 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP----PRSGSIRF 59 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 458999999999999999999999876 55555443
No 443
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.52 E-value=4.5e-07 Score=76.92 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP----IDEGQIQ 58 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 447999999999999999999999876 4445443
No 444
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=5.3e-07 Score=73.05 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+..++|+|+||+|||||+++|+|... ..+..|.+........... ...-.++.+.+.+.... .+.+.+.-..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~~~G~i~~~g~~~~~~~-~~~i~~~~q~~~~~~~~----tv~~~l~~~~ 104 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRKT--AGVITGEILINGRPLDKNF-QRSTGYVEQQDVHSPNL----TVREALRFSA 104 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc--CCCcceEEEECCEehHHHh-hhceEEecccCccccCC----cHHHHHHHHH
Confidence 347999999999999999999999642 1133443332211100000 11112233444443311 1112221100
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~ 152 (352)
. . . .+|++++.++.++..++... +++++ ++.+|....
T Consensus 105 ~-----~---------~-~LSgGe~qrv~la~al~~~p---~vlllDEP~~~LD~~~~ 144 (192)
T cd03232 105 L-----L---------R-GLSVEQRKRLTIGVELAAKP---SILFLDEPTSGLDSQAA 144 (192)
T ss_pred H-----H---------h-cCCHHHhHHHHHHHHHhcCC---cEEEEeCCCcCCCHHHH
Confidence 0 0 1 68899999999888887763 34444 355654433
No 445
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.52 E-value=3.5e-07 Score=77.27 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~----p~~G~i~ 62 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVA----PDEGVIK 62 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 457999999999999999999999865 4455443
No 446
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.52 E-value=4.7e-07 Score=77.50 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 65 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIA----PDHGEIL 65 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 347999999999999999999999875 4455443
No 447
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=4.2e-07 Score=81.50 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=71.3
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEe------eCCceEEEEeCCCCC
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVL------KDGQVVNVIDTPGLF 80 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~------~~~~~~~lvDtpG~~ 80 (352)
++..+... .+..++|+|+||||||||+++|+|... +..|.+........ ... ....-.++...++++
T Consensus 45 ~~isl~i~--~Gei~~LvG~NGsGKSTLLr~I~Gl~~----p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 45 KDASLAIE--EGEIFVIMGLSGSGKSTMVRLLNRLIE----PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EeEEEEEc--CCCEEEEECCCCchHHHHHHHHHcCCC----CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 33344443 347999999999999999999999876 55555443221100 000 001122344555554
Q ss_pred CCCCCcHHH--------------HHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---
Q 018636 81 DLSAGSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV--- 143 (352)
Q Consensus 81 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv--- 143 (352)
....-.+.+ ...+..++.. -+.+.. .......+|++++.++.++..+.... +++|+
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~--~gL~~~--~~~~~~~LSgGq~QRv~LArAL~~~P---~iLLLDEP 191 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQ--VGLENY--AHSYPDELSGGMRQRVGLARALAINP---DILLMDEA 191 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--cCCChh--hhcCcccCCHHHHHHHHHHHHHhcCC---CEEEEECC
Confidence 321111111 1111111111 122211 11112479999999999999887763 34444
Q ss_pred EeCCCCCCcchhcHHHHh
Q 018636 144 FTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l 161 (352)
++.+|.... ..+.+.+
T Consensus 192 ts~LD~~~r--~~l~~~L 207 (400)
T PRK10070 192 FSALDPLIR--TEMQDEL 207 (400)
T ss_pred CccCCHHHH--HHHHHHH
Confidence 467765543 4444433
No 448
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.51 E-value=1.2e-06 Score=69.00 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 447999999999999999999999876
No 449
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.51 E-value=2.4e-07 Score=75.31 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ----PSSGNIY 58 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEE
Confidence 457999999999999999999999866 4555443
No 450
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.51 E-value=2.8e-07 Score=78.46 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=32.3
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.++..+... ++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 21 l~~is~~i~--~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~i~~ 64 (257)
T PRK10619 21 LKGVSLQAN--AGDVISIIGSSGSGKSTFLRCINFLEK----PSEGSIVV 64 (257)
T ss_pred EeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEE
Confidence 344444443 458999999999999999999999875 44554443
No 451
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.51 E-value=1.4e-07 Score=77.94 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 15 l~~isl~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 57 (213)
T cd03235 15 LEDVSFEVK--PGEFLAIVGPNGAGKSTLLKAILGLLK----PTSGSIR 57 (213)
T ss_pred eecceeEEc--CCCEEEEECCCCCCHHHHHHHHcCCCC----CCCCEEE
Confidence 344444443 347999999999999999999999865 4455443
No 452
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=2e-06 Score=67.19 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=35.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE 59 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~ 59 (352)
.++.+..-. ++..|+++|++|||||||+|.++|-.. |+.|.++....
T Consensus 21 le~vsL~ia--~ge~vv~lGpSGcGKTTLLnl~AGf~~----P~~G~i~l~~r 67 (259)
T COG4525 21 LEDVSLTIA--SGELVVVLGPSGCGKTTLLNLIAGFVT----PSRGSIQLNGR 67 (259)
T ss_pred hhccceeec--CCCEEEEEcCCCccHHHHHHHHhcCcC----cccceEEECCE
Confidence 344444444 347899999999999999999999877 77777665443
No 453
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.4e-07 Score=88.85 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=32.1
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+.+++|+|+||+|||||+++|+|... +..|.+.
T Consensus 334 ~l~~is~~i~--~Ge~~~l~G~NGsGKSTLl~~i~G~~~----p~~G~i~ 377 (530)
T PRK15064 334 LFKNLNLLLE--AGERLAIIGENGVGKTTLLRTLVGELE----PDSGTVK 377 (530)
T ss_pred eecCcEEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEE
Confidence 3344444443 347999999999999999999999865 5555443
No 454
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.50 E-value=1.1e-06 Score=75.11 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=33.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 28 ~l~~vsl~i~--~Ge~~~i~G~NGsGKSTLl~~l~Gl~~----p~~G~i~~ 72 (267)
T PRK15112 28 AVKPLSFTLR--EGQTLAIIGENGSGKSTLAKMLAGMIE----PTSGELLI 72 (267)
T ss_pred eeeeeeEEec--CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCCCEEEE
Confidence 4455455554 347999999999999999999999876 55554443
No 455
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.50 E-value=2.3e-07 Score=77.01 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=32.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 17 il~~is~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 60 (220)
T cd03263 17 AVDDLSLNVY--KGEIFGLLGHNGAGKTTTLKMLTGELR----PTSGTAY 60 (220)
T ss_pred eecceEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 3444444444 347999999999999999999999866 5555443
No 456
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.50 E-value=7.6e-07 Score=90.75 Aligned_cols=123 Identities=18% Similarity=0.243 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCC-------CCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC----CcHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA----GSEF 88 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~----~~~~ 88 (352)
.-.+|||++|+||||||+.- |... +.... ....|..|... -....+++||+|.+-... .+..
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~ww-----f~~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDWW-----FTDEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccceE-----ecCCEEEEcCCCccccCCCcccccHH
Confidence 47899999999999999876 4432 22110 01112222221 234456999999765432 2233
Q ss_pred HHHHHHHHHhccc--CCccEEEEEEecCCCCC--H--------HHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 89 VGKEIVKCLGMAK--DGIHAFLVVFSVTNRFS--Q--------EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 89 ~~~~~~~~~~~~~--~~~~~~l~v~~~~~~~~--~--------~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
....+...+.... ..++++|+++++.+-++ . .-+.++..+...+|-.+ |+.||+||+|...
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhc
Confidence 4566666665442 46899999999872222 2 22345666777777666 9999999999773
No 457
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.50 E-value=1.3e-06 Score=74.55 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=33.6
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
..++..+... .+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 26 il~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 70 (265)
T TIGR02769 26 VLTNVSLSIE--EGETVGLLGRSGCGKSTLARLLLGLEK----PAQGTVSF 70 (265)
T ss_pred EeeCceeEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 4445555544 458999999999999999999999866 55555443
No 458
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.50 E-value=6.3e-07 Score=75.15 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 36 il~~vs~~i~--~Ge~~~i~G~NGsGKSTLl~~i~Gl~~----p~~G~i~ 79 (236)
T cd03267 36 ALKGISFTIE--KGEIVGFIGPNGAGKTTTLKILSGLLQ----PTSGEVR 79 (236)
T ss_pred eeeceeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCcC----CCceEEE
Confidence 3344444443 447999999999999999999999865 4455443
No 459
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.50 E-value=1.8e-07 Score=74.99 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||+++|+|...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999765
No 460
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.49 E-value=4e-07 Score=76.12 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=32.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 16 l~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 59 (230)
T TIGR03410 16 LRGVSLEVP--KGEVTCVLGRNGVGKTTLLKTLMGLLP----VKSGSIRL 59 (230)
T ss_pred ecceeeEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEEE
Confidence 344444443 458999999999999999999999876 55555443
No 461
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.49 E-value=1.8e-07 Score=76.81 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 18 l~~is~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 60 (207)
T PRK13539 18 FSGLSFTLA--AGEALVLTGPNGSGKTTLLRLIAGLLP----PAAGTIK 60 (207)
T ss_pred EeceEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 344444443 458999999999999999999999866 4455444
No 462
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.49 E-value=1.2e-06 Score=77.22 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=65.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccC-CCCCcceee------------------EeEEEE----------eeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTC------------------EMKTTV----------LKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-~~~~~t~~~------------------~~~~~~----------~~~~ 68 (352)
.+..|+|+|+||+||||++..|++......+. ..+-++.+. .+.... ...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34799999999999999999987543211000 000011111 011000 0035
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccc---cceEEEEEe
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV---FDYMIVVFT 145 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~ilv~n 145 (352)
..+.+|||+|+... +..+.+.+.. +. ....+.-.++|++++...... ...+..+....+... ....-+|+|
T Consensus 216 ~DlVLIDTaG~~~~---d~~l~e~La~-L~-~~~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~I~T 289 (374)
T PRK14722 216 KHMVLIDTIGMSQR---DRTVSDQIAM-LH-GADTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGCILT 289 (374)
T ss_pred CCEEEEcCCCCCcc---cHHHHHHHHH-Hh-ccCCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEEEEe
Confidence 57889999997753 2233333332 22 122344567788876322222 223343443322110 013467889
Q ss_pred CCCCCCc
Q 018636 146 GGDDLED 152 (352)
Q Consensus 146 k~D~~~~ 152 (352)
|+|....
T Consensus 290 KlDEt~~ 296 (374)
T PRK14722 290 KLDEASN 296 (374)
T ss_pred ccccCCC
Confidence 9998754
No 463
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.49 E-value=3.1e-07 Score=77.48 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~i~~ 61 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTR----PDEGSVLF 61 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEE
Confidence 447899999999999999999999865 44554443
No 464
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.49 E-value=9.1e-07 Score=73.90 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=32.8
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+..+..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 20 ~l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 63 (228)
T cd03257 20 ALDDVSFSIK--KGETLGLVGESGSGKSTLARAILGLLK----PTSGSII 63 (228)
T ss_pred eecCceeEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 3444445544 348999999999999999999999865 5555444
No 465
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.49 E-value=3e-07 Score=74.92 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
No 466
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=4.5e-07 Score=77.13 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 63 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYK----PTGGTIL 63 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC----CCcceEE
Confidence 457999999999999999999999865 4445433
No 467
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.48 E-value=3.9e-05 Score=74.72 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..++|+|+||+|||||+++|.|.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 68999999999999999999876
No 468
>PLN03073 ABC transporter F family; Provisional
Probab=98.48 E-value=1e-07 Score=91.92 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... .+.+|+|+|+||||||||+++|+|... +..|.+.
T Consensus 525 l~~vsl~i~--~Ge~i~LvG~NGsGKSTLLk~L~Gll~----p~~G~I~ 567 (718)
T PLN03073 525 FKNLNFGID--LDSRIAMVGPNGIGKSTILKLISGELQ----PSSGTVF 567 (718)
T ss_pred EeccEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCCceEE
Confidence 344444443 347999999999999999999999876 5556554
No 469
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=7.3e-07 Score=75.07 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=32.2
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 19 l~~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 62 (241)
T PRK14250 19 LKDISVKFE--GGAIYTIVGPSGAGKSTLIKLINRLID----PTEGSILI 62 (241)
T ss_pred eeeeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 344444443 347999999999999999999999865 55555443
No 470
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.48 E-value=2.4e-07 Score=75.68 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=28.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 17 l~~~s~~i~--~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 17 LQQISFHLP--AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EeeeeEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334444443 458999999999999999999999865
No 471
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.48 E-value=2.4e-07 Score=80.40 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=84.2
Q ss_pred CCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc-------------eE
Q 018636 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-------------VV 71 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~ 71 (352)
...++.++.... +..+.|+|++|||||||+++|+|-.. ++.|.+..........-+..+ ++
T Consensus 19 ~av~~isl~i~~--Gef~~lLGPSGcGKTTlLR~IAGfe~----p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 19 TAVDDISLDIKK--GEFVTLLGPSGCGKTTLLRMIAGFEQ----PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred eEEecceeeecC--CcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCCCChhhcccceeecCcccCCCC
Confidence 344454555443 47899999999999999999999887 666655443322211111112 22
Q ss_pred EEEeCCCCCCC--C-CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 72 NVIDTPGLFDL--S-AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 72 ~lvDtpG~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
++.|--+|+-. . ....++.+.+..++... +... +-...-..+|++++.++.+++.+..+ |-++++ |
T Consensus 93 tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV--~L~~--~~~R~p~qLSGGQqQRVALARAL~~~----P~vLLL---D 161 (352)
T COG3842 93 TVEENVAFGLKVRKKLKKAEIKARVEEALELV--GLEG--FADRKPHQLSGGQQQRVALARALVPE----PKVLLL---D 161 (352)
T ss_pred cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHc--Cchh--hhhhChhhhChHHHHHHHHHHHhhcC----cchhhh---c
Confidence 23333333221 1 11122333444443322 1111 11111147899999999999987665 555552 2
Q ss_pred CCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCC
Q 018636 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (352)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (352)
. +...|+..+.......++.+....+...+.+.+.
T Consensus 162 E---PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHD 196 (352)
T COG3842 162 E---PLSALDAKLREQMRKELKELQRELGITFVYVTHD 196 (352)
T ss_pred C---cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 1 1122222222222224666777776666665554
No 472
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.48 E-value=9.8e-07 Score=74.07 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 59 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV----AQEGQIS 59 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC----CCceEEE
Confidence 457999999999999999999999876 4455443
No 473
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.48 E-value=2.1e-07 Score=76.50 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||+++|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 447999999999999999999999865
No 474
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.48 E-value=5.8e-07 Score=74.77 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 58 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILR----PTSGEII 58 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 457999999999999999999999865 4555443
No 475
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.47 E-value=5.8e-07 Score=76.79 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=32.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... ++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 22 ~l~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~ 65 (265)
T PRK10253 22 VAENLTVEIP--DGHFTAIIGPNGCGKSTLLRTLSRLMT----PAHGHVW 65 (265)
T ss_pred EeeecceEEC--CCCEEEEECCCCCCHHHHHHHHcCCCC----CCCcEEE
Confidence 3444455544 348999999999999999999999865 4445443
No 476
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.47 E-value=1.1e-06 Score=73.23 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=32.2
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... ++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 22 il~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 65 (225)
T PRK10247 22 ILNNISFSLR--AGEFKLITGPSGCGKSTLLKIVASLIS----PTSGTLL 65 (225)
T ss_pred eeeccEEEEc--CCCEEEEECCCCCCHHHHHHHHhcccC----CCCCeEE
Confidence 3444445544 347999999999999999999999765 4455443
No 477
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=4.6e-07 Score=71.97 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=29.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++..+..+ ++..++|+|+||+|||||+++|+|...
T Consensus 17 ~l~~i~~~i~--~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 17 VLKDVSLTIK--PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cccceEEEEc--CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3444445544 347999999999999999999999876
No 478
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.47 E-value=5.2e-07 Score=72.20 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV 54 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~ 54 (352)
.++..+... .+..++|+|+||+|||||+++|+|... +..|.+
T Consensus 18 l~~i~~~i~--~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i 59 (178)
T cd03247 18 LKNLSLELK--QGEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEI 59 (178)
T ss_pred eEEEEEEEc--CCCEEEEECCCCCCHHHHHHHHhccCC----CCCCEE
Confidence 344444444 347999999999999999999999876 445543
No 479
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.47 E-value=5e-07 Score=73.71 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|+||+|||||+++|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999999973
No 480
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=8e-07 Score=79.36 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|-.. +..|.+.
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~ 77 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQ----PTAGQIM 77 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEE
Confidence 347999999999999999999999876 5555443
No 481
>PRK13796 GTPase YqeH; Provisional
Probab=98.46 E-value=2.2e-07 Score=82.71 Aligned_cols=60 Identities=25% Similarity=0.227 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcc---cccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAF---KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
+.++.|||.+|+|||||||+|++.... ....+..+.|+.... .+.+ +....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~-~~~l--~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI-EIPL--DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE-EEEc--CCCcEEEECCCccc
Confidence 358999999999999999999854310 011222222332211 1222 22347999999964
No 482
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.46 E-value=5.7e-07 Score=76.75 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 21 ~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 21 HAVDLNIH--HGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred ecceEEEc--CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34444443 347999999999999999999999865
No 483
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=5.3e-07 Score=77.31 Aligned_cols=44 Identities=20% Similarity=0.094 Sum_probs=32.7
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 16 il~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 59 (271)
T PRK13638 16 VLKGLNLDFS--LSPVTGLVGANGCGKSTLFMNLSGLLR----PQKGAVL 59 (271)
T ss_pred cccceEEEEc--CCCEEEEECCCCCCHHHHHHHHcCCCC----CCccEEE
Confidence 4445455544 347999999999999999999999876 4555443
No 484
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.46 E-value=1e-06 Score=84.11 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE----------EEeeCCceEEEEeC----CCCCCC-
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----------TVLKDGQVVNVIDT----PGLFDL- 82 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~----------~~~~~~~~~~lvDt----pG~~~~- 82 (352)
++.+|+|+|++|+|||||+++|+|... +..|.+........ +.+.......+-+| -.++..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~----~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE----PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE 432 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC
Confidence 458999999999999999999999876 55565544321100 00001111111111 111221
Q ss_pred CCCcHHHHHHHHHH-----HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcch
Q 018636 83 SAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHE 154 (352)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~ 154 (352)
..+++++.+.+..+ +.....+.|..+ .+.+..+|++++.++.+++.++.+. +++++ ++.+|....
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i--~~~g~~LSgGqrQRiaLARall~~~---~illLDEpts~LD~~~~-- 505 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPI--GENGVLLSGGQRQRLAIARALLKDA---PILILDEATSALDNESE-- 505 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCccccee--cCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEeCccccCCHHHH--
Confidence 22333333322221 111112333322 2334579999999999999988764 56655 577776544
Q ss_pred hcHHHHh
Q 018636 155 KTLEDFL 161 (352)
Q Consensus 155 ~~l~~~l 161 (352)
..+.+.+
T Consensus 506 ~~i~~~L 512 (571)
T TIGR02203 506 RLVQAAL 512 (571)
T ss_pred HHHHHHH
Confidence 4444433
No 485
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.2e-06 Score=71.66 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=28.1
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..+... ++..++|+|+||+|||||+++|+|...
T Consensus 23 l~~~s~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 23 LKDFSGVVK--PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred eeeEEEEEC--CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 344444444 447999999999999999999999854
No 486
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.45 E-value=9.8e-07 Score=75.05 Aligned_cols=44 Identities=27% Similarity=0.293 Sum_probs=31.9
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 17 il~~is~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~----p~~G~i~ 60 (258)
T PRK13548 17 LLDDVSLTLR--PGEVVAILGPNGAGKSTLLRALSGELS----PDSGEVR 60 (258)
T ss_pred eeeeeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEE
Confidence 3444444443 347999999999999999999999865 4445443
No 487
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.45 E-value=5.6e-07 Score=84.29 Aligned_cols=142 Identities=18% Similarity=0.083 Sum_probs=72.5
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEee--CCceE-EEEeCCCCCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLK--DGQVV-NVIDTPGLFD 81 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~-~lvDtpG~~~ 81 (352)
+.++..+... .+..++|+|+||+|||||+++|+|... +..|.+........ .... ....+ ++...+.+..
T Consensus 26 il~~vsl~i~--~Ge~~~liG~NGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 26 VLKGIDFTLH--AGEVHALLGGNGAGKSTLMKIIAGIVP----PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred eeeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCC
Confidence 3445455544 347899999999999999999999865 44454433211000 0000 00011 2333333222
Q ss_pred CCCC----------cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCC
Q 018636 82 LSAG----------SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGG 147 (352)
Q Consensus 82 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~ 147 (352)
.... .......+..++... +..... -..+ ..+|++++.++.++..+... |-+++ ++.+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~--~l~~~~-~~~~-~~LSgG~~qrv~la~aL~~~----p~lllLDEPt~~L 171 (510)
T PRK15439 100 NLSVKENILFGLPKRQASMQKMKQLLAAL--GCQLDL-DSSA-GSLEVADRQIVEILRGLMRD----SRILILDEPTASL 171 (510)
T ss_pred CCcHHHHhhcccccchHHHHHHHHHHHHc--CCCccc-cCCh-hhCCHHHHHHHHHHHHHHcC----CCEEEEECCCCCC
Confidence 1000 011111222222211 222111 1112 47999999999999888776 44544 5888
Q ss_pred CCCCcchhcHHHHhcc
Q 018636 148 DDLEDHEKTLEDFLGH 163 (352)
Q Consensus 148 D~~~~~~~~l~~~l~~ 163 (352)
|.... ..+.+.+..
T Consensus 172 D~~~~--~~l~~~l~~ 185 (510)
T PRK15439 172 TPAET--ERLFSRIRE 185 (510)
T ss_pred CHHHH--HHHHHHHHH
Confidence 87655 555555443
No 488
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.45 E-value=2.9e-07 Score=74.56 Aligned_cols=88 Identities=17% Similarity=0.253 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
-+|+++|.+.+|||||+.-|+|... ....+..|+-..+.......+..+.+.|.||+.+.......-.+++ ..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s---~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qv----ia 132 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQV----IA 132 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC---ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEE----EE
Confidence 5999999999999999999998754 1233444544445555434788999999999987543332212222 12
Q ss_pred ccCCccEEEEEEecC
Q 018636 100 AKDGIHAFLVVFSVT 114 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~ 114 (352)
..+.++.+++|+|+-
T Consensus 133 vartcnli~~vld~~ 147 (358)
T KOG1487|consen 133 VARTCNLIFIVLDVL 147 (358)
T ss_pred EeecccEEEEEeecc
Confidence 224567778887764
No 489
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.45 E-value=1.2e-06 Score=73.84 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=27.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..+..+... .+..++|+|+||+|||||+++|+|..
T Consensus 16 l~~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 16 LKGVNLTVK--KGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EeccceEEc--CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444443 45799999999999999999999973
No 490
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.45 E-value=5.8e-07 Score=85.88 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=69.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee----CCceEEEEeCCCCC--
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLF-- 80 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~lvDtpG~~-- 80 (352)
.++..+... ++.+|+|+|++|+|||||++.|+|... +..|.+........ .+. ...-.++-..|.++
T Consensus 351 L~~inl~i~--~G~~v~IvG~sGsGKSTLl~lL~gl~~----p~~G~I~i~g~~i~-~~~~~~~r~~i~~v~Q~~~lf~~ 423 (588)
T PRK13657 351 VEDVSFEAK--PGQTVAIVGPTGAGKSTLINLLQRVFD----PQSGRILIDGTDIR-TVTRASLRRNIAVVFQDAGLFNR 423 (588)
T ss_pred ecceeEEEC--CCCEEEEECCCCCCHHHHHHHHhcCcC----CCCCEEEECCEEhh-hCCHHHHHhheEEEecCcccccc
Confidence 444444443 447999999999999999999999876 55555443221100 000 00001122222222
Q ss_pred ---------CCCCCcHHHHHHHHH-----HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---
Q 018636 81 ---------DLSAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV--- 143 (352)
Q Consensus 81 ---------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv--- 143 (352)
....+++++...+.. ++.....+.|..+ .+-+..+|++++.++.+++.++.+. +++++
T Consensus 424 Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i--~~~g~~LSgGq~QRialARall~~~---~iliLDEp 498 (588)
T PRK13657 424 SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVV--GERGRQLSGGERQRLAIARALLKDP---PILILDEA 498 (588)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchh--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCC
Confidence 122223333222211 1111112334332 2333579999999999999988863 45554
Q ss_pred EeCCCCCC
Q 018636 144 FTGGDDLE 151 (352)
Q Consensus 144 ~nk~D~~~ 151 (352)
++.+|...
T Consensus 499 ts~LD~~t 506 (588)
T PRK13657 499 TSALDVET 506 (588)
T ss_pred ccCCCHHH
Confidence 45665443
No 491
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.45 E-value=5.7e-07 Score=79.82 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=27.8
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..+... .+..++|+|+||||||||+++|+|-..
T Consensus 22 ~~vsl~i~--~Ge~~~llGpsGsGKSTLLr~iaGl~~ 56 (362)
T TIGR03258 22 DDLSLEIE--AGELLALIGKSGCGKTTLLRAIAGFVK 56 (362)
T ss_pred eeeEEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444443 347899999999999999999999876
No 492
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.45 E-value=1.3e-06 Score=76.96 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=33.3
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++.++... .+..++|+|+||||||||+++|.|... ++.|.+..
T Consensus 20 ~L~~vsl~i~--~Gei~gIiG~sGaGKSTLlr~I~gl~~----p~~G~I~i 64 (343)
T TIGR02314 20 ALNNVSLHVP--AGQIYGVIGASGAGKSTLIRCVNLLER----PTSGSVIV 64 (343)
T ss_pred EEeeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 3444445444 347899999999999999999999876 55555443
No 493
>PRK13409 putative ATPase RIL; Provisional
Probab=98.45 E-value=3.8e-07 Score=86.28 Aligned_cols=128 Identities=13% Similarity=0.047 Sum_probs=65.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCce----EEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV----VNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
.+..++|+|+||+|||||+++|+|... +..|.+.....+.++. +... .++.|...+......... ..
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~----p~~G~I~~~~~i~y~~--Q~~~~~~~~tv~e~l~~~~~~~~~~~---~~ 434 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLK----PDEGEVDPELKISYKP--QYIKPDYDGTVEDLLRSITDDLGSSY---YK 434 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEEeeeEEEec--ccccCCCCCcHHHHHHHHhhhcChHH---HH
Confidence 457999999999999999999999876 5556554432111111 1100 011110000000000000 00
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcHHHHhcc
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l~~~l~~ 163 (352)
...+.. -+.... .-..+ ..+|++++.++.++..+.... +++|+ ++++|.... ..+.+.+..
T Consensus 435 ~~~L~~--l~l~~~-~~~~~-~~LSGGe~QRvaiAraL~~~p---~llLLDEPt~~LD~~~~--~~l~~~l~~ 498 (590)
T PRK13409 435 SEIIKP--LQLERL-LDKNV-KDLSGGELQRVAIAACLSRDA---DLYLLDEPSAHLDVEQR--LAVAKAIRR 498 (590)
T ss_pred HHHHHH--CCCHHH-HhCCc-ccCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH--HHHHHHHHH
Confidence 111110 011110 11122 479999999999998877652 44444 588887655 555555443
No 494
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.44 E-value=2.4e-07 Score=87.67 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
+.++.++... .+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 337 ~l~~isl~i~--~Ge~~~l~G~NGsGKSTLl~~l~G~~~----p~~G~i~ 380 (552)
T TIGR03719 337 LIDDLSFKLP--PGGIVGVIGPNGAGKSTLFRMITGQEQ----PDSGTIK 380 (552)
T ss_pred eeccceEEEc--CCCEEEEECCCCCCHHHHHHHHcCCCC----CCCeEEE
Confidence 3344444443 347999999999999999999999866 5555443
No 495
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.44 E-value=6.1e-07 Score=82.00 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~----P~sGeI~I 83 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTM----PNKGTVDI 83 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 447999999999999999999999876 55555443
No 496
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.44 E-value=5e-07 Score=76.41 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=28.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 17 l~~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 17 LKNINLDIP--KNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred ecceeEEEC--CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 344444444 448999999999999999999999875
No 497
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.44 E-value=3.8e-07 Score=76.81 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=31.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.++..+... ++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 17 l~~~s~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 59 (240)
T PRK09493 17 LHNIDLNID--QGEVVVIIGPSGSGKSTLLRCINKLEE----ITSGDLI 59 (240)
T ss_pred eeeeeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 334444443 447999999999999999999999865 4445443
No 498
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.43 E-value=2e-06 Score=71.65 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..++..+... .+..++|+|+||+|||||+++|+|...
T Consensus 23 il~~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 23 VLKNVSLTVN--AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred EEecceEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444444444 458999999999999999999999865
No 499
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.43 E-value=1.3e-06 Score=73.41 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~i~ 58 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQ----PDSGRIR 58 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEE
Confidence 457999999999999999999999865 4455443
No 500
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.43 E-value=1.2e-06 Score=72.81 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||+|||||+++|+|... +..|.++
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 38 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP----PAKGTVK 38 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 457999999999999999999999865 4445443
Done!