Query 018636
Match_columns 352
No_of_seqs 341 out of 2906
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 03:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxw_A GTPase IMAP family memb 100.0 1.4E-28 4.9E-33 206.5 21.9 203 17-225 19-223 (247)
2 3lxx_A GTPase IMAP family memb 100.0 3.8E-28 1.3E-32 203.5 19.9 204 16-225 26-229 (239)
3 2xtp_A GTPase IMAP family memb 100.0 5.6E-26 1.9E-30 192.9 24.5 202 15-222 18-220 (260)
4 4dhe_A Probable GTP-binding pr 99.8 3.2E-20 1.1E-24 153.7 16.5 177 17-210 27-211 (223)
5 3iev_A GTP-binding protein ERA 99.8 6.9E-21 2.4E-25 164.8 12.8 181 15-218 6-189 (308)
6 1wf3_A GTP-binding protein; GT 99.8 7.1E-20 2.4E-24 157.5 18.9 166 19-210 7-173 (301)
7 1svi_A GTP-binding protein YSX 99.8 9E-19 3.1E-23 141.8 18.5 169 17-208 21-193 (195)
8 3pqc_A Probable GTP-binding pr 99.8 1.6E-18 5.5E-23 140.2 18.2 170 17-209 21-193 (195)
9 3def_A T7I23.11 protein; chlor 99.8 5.5E-18 1.9E-22 143.5 17.4 153 18-175 35-188 (262)
10 1h65_A Chloroplast outer envel 99.8 6.5E-18 2.2E-22 143.7 17.4 196 18-218 38-253 (270)
11 3t5d_A Septin-7; GTP-binding p 99.8 5.8E-18 2E-22 144.3 14.4 173 18-209 7-203 (274)
12 1ega_A Protein (GTP-binding pr 99.8 5.4E-18 1.9E-22 146.0 14.0 167 19-210 8-175 (301)
13 2gj8_A MNME, tRNA modification 99.8 8.6E-18 2.9E-22 133.1 13.2 163 18-209 3-165 (172)
14 2qu8_A Putative nucleolar GTP- 99.8 3.6E-17 1.2E-21 135.7 17.3 173 17-209 27-204 (228)
15 2lkc_A Translation initiation 99.8 2.8E-17 9.4E-22 130.9 15.8 165 18-210 7-171 (178)
16 1upt_A ARL1, ADP-ribosylation 99.8 1.9E-17 6.4E-22 130.9 14.2 163 18-210 6-169 (171)
17 4bas_A ADP-ribosylation factor 99.7 4.8E-17 1.6E-21 132.0 16.5 169 14-210 12-189 (199)
18 2dyk_A GTP-binding protein; GT 99.7 2E-17 6.8E-22 129.4 13.1 159 20-208 2-160 (161)
19 4dcu_A GTP-binding protein ENG 99.7 1.9E-17 6.6E-22 151.1 13.9 180 17-214 193-373 (456)
20 3iby_A Ferrous iron transport 99.7 1.5E-17 5E-22 139.9 12.0 161 20-207 2-164 (256)
21 1ksh_A ARF-like protein 2; sma 99.7 4.4E-17 1.5E-21 130.8 14.4 163 17-210 16-180 (186)
22 1zd9_A ADP-ribosylation factor 99.7 1.3E-17 4.4E-22 134.1 11.1 162 18-209 21-184 (188)
23 3tw8_B RAS-related protein RAB 99.7 5.4E-17 1.8E-21 129.5 14.2 161 17-209 7-170 (181)
24 2hjg_A GTP-binding protein ENG 99.7 1.6E-17 5.6E-22 150.7 12.3 177 18-213 174-352 (436)
25 1z0f_A RAB14, member RAS oncog 99.7 4.5E-17 1.5E-21 129.7 12.7 162 17-208 13-176 (179)
26 4dsu_A GTPase KRAS, isoform 2B 99.7 5.3E-17 1.8E-21 130.5 13.2 159 18-209 3-165 (189)
27 3i8s_A Ferrous iron transport 99.7 3E-17 1E-21 139.6 12.1 177 19-222 3-183 (274)
28 2j1l_A RHO-related GTP-binding 99.7 2.1E-16 7.1E-21 129.8 16.6 166 18-210 33-209 (214)
29 1mky_A Probable GTP-binding pr 99.7 5.3E-17 1.8E-21 147.5 14.1 165 20-210 2-166 (439)
30 3reg_A RHO-like small GTPase; 99.7 3.8E-17 1.3E-21 132.1 11.8 161 18-210 22-188 (194)
31 1r8s_A ADP-ribosylation factor 99.7 3.9E-17 1.3E-21 128.2 11.3 159 20-209 1-161 (164)
32 2fh5_B SR-beta, signal recogni 99.7 1.4E-16 4.8E-21 130.8 14.9 118 18-152 6-130 (214)
33 2j69_A Bacterial dynamin-like 99.7 4.5E-16 1.5E-20 148.3 20.4 123 18-152 68-245 (695)
34 2il1_A RAB12; G-protein, GDP, 99.7 9.9E-17 3.4E-21 129.4 13.5 162 17-209 24-189 (192)
35 1z08_A RAS-related protein RAB 99.7 1.2E-16 4.1E-21 126.1 13.7 161 18-209 5-168 (170)
36 3a1s_A Iron(II) transport prot 99.7 6.2E-16 2.1E-20 130.1 18.8 162 19-209 5-166 (258)
37 3tkl_A RAS-related protein RAB 99.7 1.8E-16 6.2E-21 128.2 14.9 162 18-210 15-179 (196)
38 2h57_A ADP-ribosylation factor 99.7 3.6E-17 1.2E-21 131.8 10.6 163 17-209 19-186 (190)
39 2q3h_A RAS homolog gene family 99.7 1.3E-16 4.3E-21 129.8 13.7 182 1-209 2-194 (201)
40 3cph_A RAS-related protein SEC 99.7 6.2E-17 2.1E-21 132.8 12.0 161 17-209 18-181 (213)
41 1zj6_A ADP-ribosylation factor 99.7 1.6E-16 5.6E-21 127.5 14.2 160 18-210 15-178 (187)
42 3t5g_A GTP-binding protein RHE 99.7 1.1E-15 3.9E-20 121.9 18.9 162 18-210 5-169 (181)
43 4gzl_A RAS-related C3 botulinu 99.7 4.9E-17 1.7E-21 132.5 11.1 165 17-207 28-202 (204)
44 3con_A GTPase NRAS; structural 99.7 3.5E-16 1.2E-20 125.9 15.9 160 18-210 20-183 (190)
45 1wms_A RAB-9, RAB9, RAS-relate 99.7 3.2E-16 1.1E-20 124.5 15.2 162 18-209 6-173 (177)
46 1g16_A RAS-related protein SEC 99.7 6.8E-17 2.3E-21 127.5 11.2 160 19-210 3-165 (170)
47 2efe_B Small GTP-binding prote 99.7 1.6E-16 5.5E-21 126.8 13.3 161 18-208 11-173 (181)
48 2bme_A RAB4A, RAS-related prot 99.7 4.7E-16 1.6E-20 124.7 16.1 161 18-209 9-172 (186)
49 3k53_A Ferrous iron transport 99.7 8.3E-16 2.8E-20 130.7 18.5 166 19-212 3-168 (271)
50 2gf9_A RAS-related protein RAB 99.7 6.5E-16 2.2E-20 124.2 16.8 163 17-209 20-184 (189)
51 2g6b_A RAS-related protein RAB 99.7 5.5E-16 1.9E-20 123.5 16.3 163 18-210 9-174 (180)
52 1mky_A Probable GTP-binding pr 99.7 1.9E-16 6.7E-21 143.8 15.3 179 18-213 179-358 (439)
53 1r2q_A RAS-related protein RAB 99.7 6.5E-17 2.2E-21 127.6 10.6 160 19-208 6-167 (170)
54 3clv_A RAB5 protein, putative; 99.7 2.2E-16 7.4E-21 128.7 14.1 158 18-209 6-203 (208)
55 1u8z_A RAS-related protein RAL 99.7 3.8E-16 1.3E-20 122.8 14.9 160 18-209 3-166 (168)
56 1kao_A RAP2A; GTP-binding prot 99.7 3.3E-16 1.1E-20 123.0 14.6 160 19-210 3-166 (167)
57 1zbd_A Rabphilin-3A; G protein 99.7 2.7E-16 9.3E-21 128.0 14.1 161 19-209 8-170 (203)
58 2bcg_Y Protein YP2, GTP-bindin 99.7 3.9E-16 1.3E-20 127.3 15.1 162 18-210 7-171 (206)
59 1z0j_A RAB-22, RAS-related pro 99.7 1E-16 3.4E-21 126.5 11.2 160 19-208 6-167 (170)
60 1fzq_A ADP-ribosylation factor 99.7 7.3E-17 2.5E-21 128.9 10.4 162 17-208 14-176 (181)
61 3q72_A GTP-binding protein RAD 99.7 4.5E-16 1.5E-20 122.3 14.8 160 19-210 2-164 (166)
62 2x77_A ADP-ribosylation factor 99.7 3E-16 1E-20 126.2 14.0 164 18-211 21-185 (189)
63 1ky3_A GTP-binding protein YPT 99.7 2.5E-16 8.6E-21 125.7 13.4 166 17-209 6-177 (182)
64 3oes_A GTPase rhebl1; small GT 99.7 1.3E-15 4.3E-20 123.8 17.7 165 15-210 20-187 (201)
65 2b6h_A ADP-ribosylation factor 99.7 1.3E-16 4.3E-21 128.7 11.6 162 17-208 27-189 (192)
66 2wji_A Ferrous iron transport 99.7 2.7E-16 9.1E-21 123.6 13.2 161 19-208 3-163 (165)
67 2fu5_C RAS-related protein RAB 99.7 1.9E-16 6.5E-21 126.6 12.5 159 18-209 7-170 (183)
68 1ek0_A Protein (GTP-binding pr 99.7 3.5E-17 1.2E-21 129.2 8.0 160 19-208 3-167 (170)
69 1jwy_B Dynamin A GTPase domain 99.7 2.6E-16 9E-21 137.1 14.4 176 18-210 23-262 (315)
70 2a9k_A RAS-related protein RAL 99.7 3.6E-16 1.2E-20 125.4 14.1 160 18-209 17-180 (187)
71 2ew1_A RAS-related protein RAB 99.7 6.8E-16 2.3E-20 125.3 15.8 161 18-209 25-188 (201)
72 3bc1_A RAS-related protein RAB 99.7 6.8E-16 2.3E-20 124.5 15.8 163 18-209 10-184 (195)
73 1moz_A ARL1, ADP-ribosylation 99.7 2.6E-16 8.9E-21 125.8 13.0 161 17-210 16-180 (183)
74 3dz8_A RAS-related protein RAB 99.7 1.2E-16 4.1E-21 128.8 10.9 163 18-210 22-186 (191)
75 2hup_A RAS-related protein RAB 99.7 5.6E-16 1.9E-20 125.9 14.8 162 18-210 28-193 (201)
76 2fg5_A RAB-22B, RAS-related pr 99.7 1.8E-16 6.1E-21 127.9 11.7 163 17-209 21-185 (192)
77 2a5j_A RAS-related protein RAB 99.7 3.6E-16 1.2E-20 126.0 13.5 161 18-209 20-183 (191)
78 2h17_A ADP-ribosylation factor 99.7 4.4E-17 1.5E-21 130.2 7.9 159 18-206 20-179 (181)
79 3gee_A MNME, tRNA modification 99.7 1.5E-16 5.1E-21 144.7 12.2 164 19-209 233-397 (476)
80 2bov_A RAla, RAS-related prote 99.7 5.9E-16 2E-20 126.2 14.6 161 17-209 12-176 (206)
81 2fn4_A P23, RAS-related protei 99.7 1.2E-16 4.2E-21 127.4 10.3 163 15-210 5-172 (181)
82 2gco_A H9, RHO-related GTP-bin 99.7 4.8E-16 1.6E-20 126.3 13.8 165 18-208 24-198 (201)
83 2gf0_A GTP-binding protein DI- 99.7 2.3E-16 7.8E-21 127.9 11.7 161 18-210 7-171 (199)
84 3kkq_A RAS-related protein M-R 99.7 3.4E-16 1.2E-20 125.1 12.6 162 16-209 15-181 (183)
85 2wjg_A FEOB, ferrous iron tran 99.7 8.3E-16 2.8E-20 123.4 14.8 165 18-211 6-170 (188)
86 3o47_A ADP-ribosylation factor 99.7 1.7E-16 5.7E-21 138.5 11.4 161 18-209 164-326 (329)
87 1z06_A RAS-related protein RAB 99.7 9.8E-16 3.3E-20 123.2 15.1 160 18-208 19-186 (189)
88 2o52_A RAS-related protein RAB 99.7 5.9E-16 2E-20 125.6 13.9 161 18-209 24-187 (200)
89 2oil_A CATX-8, RAS-related pro 99.7 7.2E-16 2.5E-20 124.4 14.2 162 18-209 24-187 (193)
90 1vg8_A RAS-related protein RAB 99.7 3.5E-16 1.2E-20 127.7 12.5 163 17-209 6-174 (207)
91 3geh_A MNME, tRNA modification 99.7 1.1E-16 3.8E-21 144.9 10.4 162 19-211 224-385 (462)
92 3ihw_A Centg3; RAS, centaurin, 99.7 9.2E-16 3.2E-20 122.8 14.5 160 15-210 16-180 (184)
93 2nzj_A GTP-binding protein REM 99.7 1.6E-15 5.4E-20 120.2 15.5 163 18-209 3-168 (175)
94 1mh1_A RAC1; GTP-binding, GTPa 99.7 6.1E-16 2.1E-20 123.9 13.1 166 18-210 4-180 (186)
95 2hjg_A GTP-binding protein ENG 99.7 5E-17 1.7E-21 147.5 7.5 162 20-210 4-165 (436)
96 2fv8_A H6, RHO-related GTP-bin 99.7 4.2E-16 1.4E-20 127.3 12.2 164 19-209 25-199 (207)
97 1c1y_A RAS-related protein RAP 99.7 9.5E-16 3.2E-20 120.5 13.8 159 19-208 3-165 (167)
98 1wb1_A Translation elongation 99.7 1.4E-15 4.8E-20 139.1 16.9 165 18-210 18-189 (482)
99 2yc2_C IFT27, small RAB-relate 99.7 4.8E-16 1.6E-20 126.9 12.5 162 18-209 19-191 (208)
100 2ce2_X GTPase HRAS; signaling 99.7 9.7E-16 3.3E-20 120.2 13.8 158 19-209 3-164 (166)
101 1z2a_A RAS-related protein RAB 99.7 4.5E-16 1.5E-20 122.5 11.7 160 18-208 4-165 (168)
102 2erx_A GTP-binding protein DI- 99.7 6.2E-16 2.1E-20 122.1 12.5 160 19-209 3-166 (172)
103 2atx_A Small GTP binding prote 99.7 5.7E-16 1.9E-20 125.1 12.5 164 18-208 17-191 (194)
104 3q3j_B RHO-related GTP-binding 99.7 7.9E-16 2.7E-20 126.3 13.5 168 17-210 25-203 (214)
105 1x3s_A RAS-related protein RAB 99.7 2.6E-16 9E-21 127.1 10.4 163 18-210 14-178 (195)
106 2y8e_A RAB-protein 6, GH09086P 99.7 3.6E-16 1.2E-20 124.4 11.0 160 18-208 13-175 (179)
107 1f6b_A SAR1; gtpases, N-termin 99.7 3.6E-16 1.2E-20 126.7 10.9 167 18-206 24-195 (198)
108 3b1v_A Ferrous iron uptake tra 99.7 1.3E-15 4.5E-20 128.8 14.7 161 19-209 3-163 (272)
109 2e87_A Hypothetical protein PH 99.7 7.8E-15 2.7E-19 129.6 20.1 167 18-210 166-336 (357)
110 1m2o_B GTP-binding protein SAR 99.7 3.3E-16 1.1E-20 126.1 10.4 165 18-206 22-188 (190)
111 4dcu_A GTP-binding protein ENG 99.7 4.5E-17 1.6E-21 148.7 6.0 162 19-209 23-184 (456)
112 4djt_A GTP-binding nuclear pro 99.7 1.3E-16 4.5E-21 131.4 8.1 166 18-213 10-178 (218)
113 2p5s_A RAS and EF-hand domain 99.7 8.9E-17 3E-21 130.4 7.0 167 18-209 27-196 (199)
114 4dkx_A RAS-related protein RAB 99.7 6.5E-16 2.2E-20 126.3 11.8 158 18-208 12-174 (216)
115 3llu_A RAS-related GTP-binding 99.7 4.3E-15 1.5E-19 120.1 16.4 171 14-207 15-194 (196)
116 2f7s_A C25KG, RAS-related prot 99.7 1.9E-15 6.4E-20 124.3 14.0 159 18-209 24-198 (217)
117 1lnz_A SPO0B-associated GTP-bi 99.7 5.2E-16 1.8E-20 135.2 11.1 170 21-213 160-333 (342)
118 2cxx_A Probable GTP-binding pr 99.6 1.8E-15 6E-20 121.7 13.0 169 20-210 2-184 (190)
119 3cpj_B GTP-binding protein YPT 99.6 1E-15 3.6E-20 126.4 11.9 162 18-210 12-176 (223)
120 3t1o_A Gliding protein MGLA; G 99.6 1.3E-15 4.4E-20 123.2 12.2 164 18-209 13-191 (198)
121 1m7b_A RND3/RHOE small GTP-bin 99.6 3.6E-15 1.2E-19 119.3 14.6 166 18-208 6-181 (184)
122 2aka_B Dynamin-1; fusion prote 99.6 4.7E-15 1.6E-19 128.2 16.0 174 17-207 24-250 (299)
123 3q85_A GTP-binding protein REM 99.6 1.8E-15 6.2E-20 119.2 12.3 162 20-210 3-167 (169)
124 2hxs_A RAB-26, RAS-related pro 99.6 5.2E-16 1.8E-20 123.4 9.2 165 18-210 5-173 (178)
125 3bwd_D RAC-like GTP-binding pr 99.6 3.5E-16 1.2E-20 124.9 8.2 165 18-208 7-179 (182)
126 1gwn_A RHO-related GTP-binding 99.6 4.1E-15 1.4E-19 121.1 14.5 167 17-208 26-202 (205)
127 2iwr_A Centaurin gamma 1; ANK 99.6 2.2E-15 7.5E-20 119.8 12.3 155 18-208 6-167 (178)
128 2qtf_A Protein HFLX, GTP-bindi 99.6 1E-14 3.5E-19 128.4 17.4 171 21-211 181-355 (364)
129 1pui_A ENGB, probable GTP-bind 99.6 1E-14 3.4E-19 119.3 16.3 173 17-210 24-199 (210)
130 3zvr_A Dynamin-1; hydrolase, D 99.6 4.8E-15 1.6E-19 140.2 16.1 166 19-206 51-274 (772)
131 2atv_A RERG, RAS-like estrogen 99.6 6.1E-15 2.1E-19 119.2 14.5 160 17-209 26-190 (196)
132 3j2k_7 ERF3, eukaryotic polype 99.6 3.9E-15 1.3E-19 134.8 14.4 167 15-202 13-217 (439)
133 3cbq_A GTP-binding protein REM 99.6 2.6E-15 8.9E-20 121.3 11.9 169 12-210 16-188 (195)
134 1xzp_A Probable tRNA modificat 99.6 1.2E-15 4.3E-20 138.7 11.0 158 20-208 244-403 (482)
135 3qq5_A Small GTP-binding prote 99.6 8.4E-16 2.9E-20 137.4 9.7 167 15-210 30-196 (423)
136 3lvq_E ARF-GAP with SH3 domain 99.6 8.9E-16 3E-20 142.0 10.2 163 18-210 321-484 (497)
137 3gj0_A GTP-binding nuclear pro 99.6 3.8E-16 1.3E-20 128.9 6.7 161 17-211 13-176 (221)
138 2zej_A Dardarin, leucine-rich 99.6 3.4E-15 1.1E-19 119.5 12.1 166 20-210 3-178 (184)
139 2x2e_A Dynamin-1; nitration, h 99.6 1.6E-14 5.4E-19 127.4 17.3 170 19-206 31-254 (353)
140 2j0v_A RAC-like GTP-binding pr 99.6 3.3E-15 1.1E-19 122.4 12.1 166 18-210 8-180 (212)
141 1s0u_A EIF-2-gamma, translatio 99.6 2.1E-14 7.1E-19 129.2 18.3 167 18-210 7-198 (408)
142 1kk1_A EIF2gamma; initiation o 99.6 1.4E-14 4.9E-19 130.4 17.1 168 18-210 9-200 (410)
143 3r7w_A Gtpase1, GTP-binding pr 99.6 1.6E-14 5.5E-19 124.8 16.5 126 19-152 3-130 (307)
144 3sjy_A Translation initiation 99.6 3.1E-15 1.1E-19 134.3 12.4 168 18-210 7-192 (403)
145 3c5c_A RAS-like protein 12; GD 99.6 1.3E-14 4.6E-19 116.3 14.4 160 17-208 19-184 (187)
146 3l0i_B RAS-related protein RAB 99.6 5.5E-17 1.9E-21 131.7 -0.3 161 18-209 32-195 (199)
147 3tr5_A RF-3, peptide chain rel 99.6 3.3E-15 1.1E-19 137.6 10.4 118 18-152 12-149 (528)
148 1d2e_A Elongation factor TU (E 99.6 3.2E-14 1.1E-18 127.5 16.4 164 19-209 3-194 (397)
149 3p26_A Elongation factor 1 alp 99.6 7.6E-15 2.6E-19 134.8 12.6 157 18-199 32-227 (483)
150 1zun_B Sulfate adenylate trans 99.6 9.4E-15 3.2E-19 132.4 12.9 159 17-199 22-213 (434)
151 2qag_C Septin-7; cell cycle, c 99.6 2.7E-14 9.2E-19 127.4 15.4 150 19-181 31-204 (418)
152 3t34_A Dynamin-related protein 99.6 2.2E-14 7.4E-19 127.0 14.5 128 20-152 35-218 (360)
153 2elf_A Protein translation elo 99.6 1.2E-14 4.1E-19 128.4 12.0 151 21-210 23-180 (370)
154 2g3y_A GTP-binding protein GEM 99.6 8.6E-14 2.9E-18 113.4 16.0 163 18-209 36-202 (211)
155 2qag_A Septin-2, protein NEDD5 99.6 2.7E-14 9.2E-19 125.9 13.9 134 19-160 37-195 (361)
156 2qag_B Septin-6, protein NEDD5 99.6 3E-14 1E-18 126.4 13.7 144 12-163 35-200 (427)
157 3th5_A RAS-related C3 botulinu 99.3 2.1E-16 7.3E-21 128.7 0.0 165 17-207 28-202 (204)
158 3izy_P Translation initiation 99.6 1.7E-16 5.7E-21 145.6 -1.2 163 20-209 5-167 (537)
159 2c78_A Elongation factor TU-A; 99.6 3.1E-14 1.1E-18 127.9 13.6 166 17-209 9-211 (405)
160 1udx_A The GTP-binding protein 99.5 6.5E-14 2.2E-18 124.8 14.3 164 20-211 158-326 (416)
161 2f9l_A RAB11B, member RAS onco 99.5 8.6E-14 2.9E-18 112.7 13.8 160 19-209 5-167 (199)
162 3izq_1 HBS1P, elongation facto 99.5 3E-14 1E-18 133.6 12.6 159 17-200 165-362 (611)
163 2wkq_A NPH1-1, RAS-related C3 99.5 4.5E-14 1.6E-18 123.8 12.8 164 19-209 155-329 (332)
164 2ged_A SR-beta, signal recogni 99.5 4.6E-14 1.6E-18 113.7 9.9 129 17-162 46-179 (193)
165 1jny_A EF-1-alpha, elongation 99.5 8.8E-14 3E-18 126.0 11.1 157 18-199 5-202 (435)
166 1oix_A RAS-related protein RAB 99.5 1.4E-12 4.9E-17 104.7 16.9 159 19-208 29-190 (191)
167 4a9a_A Ribosome-interacting GT 99.5 1.3E-13 4.6E-18 120.7 11.5 125 17-150 70-195 (376)
168 2qpt_A EH domain-containing pr 99.5 5.2E-14 1.8E-18 130.5 9.3 136 18-163 64-242 (550)
169 1g7s_A Translation initiation 99.5 1.3E-13 4.3E-18 128.6 11.8 114 20-151 6-136 (594)
170 2cjw_A GTP-binding protein GEM 99.5 9.1E-14 3.1E-18 111.9 9.1 161 19-208 6-170 (192)
171 1f60_A Elongation factor EEF1A 99.5 5.4E-14 1.9E-18 128.0 8.5 160 18-199 6-201 (458)
172 3avx_A Elongation factor TS, e 99.5 6E-13 2.1E-17 129.8 16.1 166 17-209 294-485 (1289)
173 1nrj_B SR-beta, signal recogni 99.5 3.3E-13 1.1E-17 110.9 12.3 119 18-152 11-135 (218)
174 3cb4_D GTP-binding protein LEP 99.5 1.6E-13 5.6E-18 127.7 10.4 162 19-210 4-182 (599)
175 2ywe_A GTP-binding protein LEP 99.5 1.7E-13 5.8E-18 127.3 10.3 162 19-210 6-184 (600)
176 1zo1_I IF2, translation initia 99.5 1.4E-15 4.9E-20 138.2 -3.7 160 19-206 4-163 (501)
177 3dpu_A RAB family protein; roc 99.5 2.5E-13 8.4E-18 126.6 11.0 160 17-211 39-209 (535)
178 2qnr_A Septin-2, protein NEDD5 99.5 1.2E-12 3.9E-17 112.6 14.1 171 19-209 18-213 (301)
179 2www_A Methylmalonic aciduria 99.5 3.2E-13 1.1E-17 118.5 10.8 114 67-210 165-279 (349)
180 3sop_A Neuronal-specific septi 99.4 4.7E-13 1.6E-17 112.9 11.0 150 20-182 3-178 (270)
181 2xex_A Elongation factor G; GT 99.4 1.9E-12 6.3E-17 123.5 15.7 119 17-152 8-142 (693)
182 1dar_A EF-G, elongation factor 99.4 1.4E-12 4.6E-17 124.4 14.0 119 17-152 10-144 (691)
183 3vqt_A RF-3, peptide chain rel 99.4 2.1E-12 7E-17 119.7 14.7 118 18-152 30-167 (548)
184 2p67_A LAO/AO transport system 99.4 2E-12 6.8E-17 113.3 13.6 110 67-209 147-260 (341)
185 3p32_A Probable GTPase RV1496/ 99.4 7.8E-13 2.7E-17 116.6 10.8 113 67-210 170-284 (355)
186 1r5b_A Eukaryotic peptide chai 99.4 3.9E-13 1.3E-17 122.6 9.0 159 17-201 41-243 (467)
187 3mca_A HBS1, elongation factor 99.4 1.3E-14 4.5E-19 135.7 -1.1 168 17-209 175-396 (592)
188 1wxq_A GTP-binding protein; st 99.4 9.6E-13 3.3E-17 117.1 10.9 90 20-115 1-113 (397)
189 2dy1_A Elongation factor G; tr 99.4 3.2E-12 1.1E-16 121.4 13.4 116 18-150 8-139 (665)
190 2rdo_7 EF-G, elongation factor 99.4 3.1E-12 1.1E-16 122.1 12.4 119 17-152 8-149 (704)
191 2h5e_A Peptide chain release f 99.4 3.3E-12 1.1E-16 117.8 12.1 118 18-152 12-149 (529)
192 3c5h_A Glucocorticoid receptor 99.3 1.4E-12 4.9E-17 109.6 7.5 87 103-208 162-253 (255)
193 2qm8_A GTPase/ATPase; G protei 99.3 7.8E-12 2.7E-16 109.1 10.8 111 67-209 146-260 (337)
194 3r7w_B Gtpase2, GTP-binding pr 99.3 8.3E-12 2.8E-16 106.8 10.5 119 21-152 1-121 (331)
195 1jal_A YCHF protein; nucleotid 99.2 3.4E-11 1.2E-15 104.9 11.1 89 20-114 3-107 (363)
196 3j25_A Tetracycline resistance 99.2 2.1E-11 7.2E-16 115.3 8.5 116 20-152 3-134 (638)
197 3szr_A Interferon-induced GTP- 99.2 1.1E-10 3.6E-15 109.9 12.2 125 21-152 47-229 (608)
198 1tq4_A IIGP1, interferon-induc 99.2 5.2E-10 1.8E-14 99.4 15.1 166 20-211 70-254 (413)
199 1n0u_A EF-2, elongation factor 99.2 7.8E-11 2.7E-15 114.7 10.1 117 18-150 18-163 (842)
200 3h2y_A GTPase family protein; 99.2 2.2E-12 7.6E-17 113.8 -1.1 132 20-162 161-296 (368)
201 1yrb_A ATP(GTP)binding protein 99.2 3.6E-11 1.2E-15 101.6 6.2 177 18-210 13-257 (262)
202 2dby_A GTP-binding protein; GD 99.1 1.9E-10 6.4E-15 101.0 10.3 89 20-114 2-110 (368)
203 3ec1_A YQEH GTPase; atnos1, at 99.1 1.1E-12 3.8E-17 115.9 -4.4 122 20-152 163-289 (369)
204 4fn5_A EF-G 1, elongation fact 99.1 1.6E-09 5.4E-14 103.9 15.7 119 18-152 12-152 (709)
205 1f5n_A Interferon-induced guan 99.0 9.9E-10 3.4E-14 101.7 10.8 107 18-130 37-147 (592)
206 2ohf_A Protein OLA1, GTP-bindi 99.0 4.2E-10 1.4E-14 99.1 7.3 91 18-114 21-127 (396)
207 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.1E-09 3.9E-14 96.6 8.2 93 17-114 18-126 (392)
208 1puj_A YLQF, conserved hypothe 98.9 2.1E-09 7E-14 91.3 8.3 66 18-88 119-184 (282)
209 2j37_W Signal recognition part 98.9 9.3E-09 3.2E-13 93.7 12.7 164 18-207 100-310 (504)
210 2wsm_A Hydrogenase expression/ 98.9 1.4E-08 4.9E-13 83.2 11.5 154 19-209 30-213 (221)
211 3cnl_A YLQF, putative uncharac 98.7 1.5E-08 5.3E-13 84.9 5.3 60 20-84 100-159 (262)
212 2hf9_A Probable hydrogenase ni 98.7 1.3E-07 4.6E-12 77.6 10.9 24 19-42 38-61 (226)
213 2yhs_A FTSY, cell division pro 98.7 9.8E-08 3.3E-12 86.0 10.5 120 18-151 292-452 (503)
214 3tif_A Uncharacterized ABC tra 98.7 3.1E-08 1.1E-12 81.7 6.4 36 7-44 21-56 (235)
215 3dm5_A SRP54, signal recogniti 98.6 2.3E-07 7.9E-12 82.8 11.8 122 19-152 100-254 (443)
216 4fid_A G protein alpha subunit 98.6 3E-07 1E-11 79.4 11.9 73 67-151 159-242 (340)
217 1rj9_A FTSY, signal recognitio 98.6 2.4E-07 8.3E-12 79.2 11.2 26 18-43 101-126 (304)
218 1sgw_A Putative ABC transporte 98.6 2E-08 6.7E-13 81.4 4.0 129 18-163 34-178 (214)
219 3e70_C DPA, signal recognition 98.6 2.4E-07 8.3E-12 80.0 10.7 120 17-152 127-283 (328)
220 2pcj_A ABC transporter, lipopr 98.6 3.5E-08 1.2E-12 80.8 3.8 26 19-44 30-55 (224)
221 1mv5_A LMRA, multidrug resista 98.5 1.2E-07 3.9E-12 78.8 6.7 44 115-163 138-184 (243)
222 2v3c_C SRP54, signal recogniti 98.5 1.9E-07 6.5E-12 83.8 7.8 121 20-152 100-253 (432)
223 3q5d_A Atlastin-1; G protein, 98.5 3E-07 1E-11 82.4 9.0 107 18-130 66-195 (447)
224 1b0u_A Histidine permease; ABC 98.5 3.3E-08 1.1E-12 83.0 2.5 35 8-44 23-57 (262)
225 2nq2_C Hypothetical ABC transp 98.5 9.2E-08 3.1E-12 79.7 5.2 34 18-55 30-63 (253)
226 3rlf_A Maltose/maltodextrin im 98.5 1.4E-08 4.9E-13 89.0 -0.0 35 8-44 20-54 (381)
227 2olj_A Amino acid ABC transpor 98.5 8.1E-08 2.8E-12 80.4 4.4 27 18-44 49-75 (263)
228 3b9q_A Chloroplast SRP recepto 98.5 5.8E-07 2E-11 76.9 9.5 26 18-43 99-124 (302)
229 1oxx_K GLCV, glucose, ABC tran 98.5 9.7E-08 3.3E-12 83.3 4.5 138 9-162 23-184 (353)
230 3nh6_A ATP-binding cassette SU 98.5 1.9E-08 6.6E-13 85.9 -0.2 27 18-44 79-105 (306)
231 3kl4_A SRP54, signal recogniti 98.4 2E-07 6.9E-12 83.2 6.2 125 18-152 96-253 (433)
232 2og2_A Putative signal recogni 98.4 8.1E-07 2.8E-11 77.5 9.8 26 18-43 156-181 (359)
233 2it1_A 362AA long hypothetical 98.4 3.1E-08 1.1E-12 86.6 0.5 35 8-44 20-54 (362)
234 1g29_1 MALK, maltose transport 98.4 1.3E-07 4.4E-12 83.1 4.4 35 18-56 28-62 (372)
235 3fvq_A Fe(3+) IONS import ATP- 98.4 4.4E-08 1.5E-12 85.3 1.4 42 8-55 21-62 (359)
236 1z47_A CYSA, putative ABC-tran 98.4 2.9E-08 1E-12 86.4 0.1 27 18-44 40-66 (355)
237 3tui_C Methionine import ATP-b 98.4 2.6E-07 8.7E-12 80.5 5.4 42 8-55 45-86 (366)
238 1yqt_A RNAse L inhibitor; ATP- 98.4 8E-07 2.7E-11 82.3 8.6 124 18-162 311-445 (538)
239 1t9h_A YLOQ, probable GTPase E 98.4 7.3E-08 2.5E-12 82.2 1.5 60 19-82 173-237 (307)
240 2yyz_A Sugar ABC transporter, 98.4 8.4E-08 2.9E-12 83.7 1.3 27 18-44 28-54 (359)
241 3d31_A Sulfate/molybdate ABC t 98.3 2.1E-07 7.1E-12 81.0 3.6 35 8-44 17-51 (348)
242 1v43_A Sugar-binding transport 98.3 1E-07 3.5E-12 83.6 1.3 27 18-44 36-62 (372)
243 3b5x_A Lipid A export ATP-bind 98.3 8.9E-07 3E-11 83.1 7.0 45 6-56 358-402 (582)
244 2yv5_A YJEQ protein; hydrolase 98.3 8.9E-07 3E-11 75.9 6.1 25 19-44 165-189 (302)
245 3ozx_A RNAse L inhibitor; ATP 98.3 1.2E-06 4.1E-11 81.0 6.8 34 18-55 293-326 (538)
246 3bk7_A ABC transporter ATP-bin 98.3 1.4E-06 4.8E-11 81.6 7.3 35 18-56 381-415 (607)
247 1j8m_F SRP54, signal recogniti 98.2 7.1E-06 2.4E-10 69.9 10.7 124 19-152 98-254 (297)
248 1vma_A Cell division protein F 98.2 1.1E-06 3.9E-11 75.0 5.7 25 18-42 103-127 (306)
249 1u0l_A Probable GTPase ENGC; p 98.2 8.6E-07 2.9E-11 76.0 4.9 26 19-44 169-194 (301)
250 2rcn_A Probable GTPase ENGC; Y 98.2 5.5E-07 1.9E-11 78.3 3.5 26 19-44 215-240 (358)
251 2pze_A Cystic fibrosis transme 98.2 4.2E-07 1.5E-11 74.6 2.0 35 18-56 33-67 (229)
252 4ido_A Atlastin-1; GTPase, GTP 98.2 1.7E-05 5.7E-10 70.8 12.0 107 18-130 66-195 (457)
253 4g1u_C Hemin import ATP-bindin 98.2 1.1E-06 3.7E-11 73.8 4.2 34 18-55 36-69 (266)
254 1g6h_A High-affinity branched- 98.2 3E-07 1E-11 76.9 0.8 27 18-44 32-58 (257)
255 3qf4_A ABC transporter, ATP-bi 98.1 1.1E-06 3.7E-11 82.5 4.0 27 18-44 368-394 (587)
256 3gfo_A Cobalt import ATP-bindi 98.1 1E-06 3.5E-11 74.2 3.2 35 8-44 25-59 (275)
257 2cbz_A Multidrug resistance-as 98.1 1.1E-06 3.7E-11 72.5 3.1 36 7-44 21-56 (237)
258 1vpl_A ABC transporter, ATP-bi 98.1 1.2E-06 4.1E-11 73.0 3.3 27 18-44 40-66 (256)
259 1ji0_A ABC transporter; ATP bi 98.1 1.1E-06 3.9E-11 72.6 3.1 27 18-44 31-57 (240)
260 2xxa_A Signal recognition part 98.1 3.3E-05 1.1E-09 69.4 12.8 123 18-152 99-255 (433)
261 2px0_A Flagellar biosynthesis 98.1 7.4E-06 2.5E-10 69.8 8.1 25 18-42 104-128 (296)
262 1zu4_A FTSY; GTPase, signal re 98.1 1.1E-05 3.9E-10 69.4 9.2 24 18-41 104-127 (320)
263 2ihy_A ABC transporter, ATP-bi 98.1 1.3E-06 4.5E-11 73.8 3.2 27 18-44 46-72 (279)
264 2ff7_A Alpha-hemolysin translo 98.1 1.4E-06 4.6E-11 72.4 3.1 27 18-44 34-60 (247)
265 3qf4_B Uncharacterized ABC tra 98.1 6.6E-07 2.2E-11 84.2 1.2 37 6-44 370-406 (598)
266 2ffh_A Protein (FFH); SRP54, s 98.1 1.1E-05 3.8E-10 71.9 8.8 123 18-152 97-252 (425)
267 2onk_A Molybdate/tungstate ABC 98.1 1.7E-06 5.8E-11 71.4 3.2 25 20-44 25-49 (240)
268 4f4c_A Multidrug resistance pr 98.1 3E-06 1E-10 86.7 5.7 135 18-163 1104-1262(1321)
269 2yz2_A Putative ABC transporte 98.1 1.7E-06 5.8E-11 72.7 3.3 35 8-44 24-58 (266)
270 2ixe_A Antigen peptide transpo 98.1 1.7E-06 5.9E-11 72.8 3.3 35 8-44 36-70 (271)
271 2qi9_C Vitamin B12 import ATP- 98.1 1.7E-06 5.7E-11 71.8 3.1 27 18-44 25-51 (249)
272 4a82_A Cystic fibrosis transme 98.1 4.7E-07 1.6E-11 84.9 -0.3 27 18-44 366-392 (578)
273 1zcb_A G alpha I/13; GTP-bindi 98.0 3.1E-05 1.1E-09 67.8 10.7 75 63-150 196-281 (362)
274 1cip_A Protein (guanine nucleo 98.0 2.7E-05 9.1E-10 68.0 10.2 128 62-210 187-344 (353)
275 4f4c_A Multidrug resistance pr 98.0 5.1E-06 1.8E-10 85.0 6.4 133 18-161 443-597 (1321)
276 2bbs_A Cystic fibrosis transme 98.0 2.4E-06 8.2E-11 72.5 2.9 27 18-44 63-89 (290)
277 1ye8_A Protein THEP1, hypothet 98.0 2.5E-06 8.5E-11 67.0 2.8 23 21-43 2-24 (178)
278 3j16_B RLI1P; ribosome recycli 98.0 5.5E-05 1.9E-09 70.8 12.3 25 20-44 379-403 (608)
279 1htw_A HI0065; nucleotide-bind 98.0 3E-06 1E-10 65.0 3.2 26 18-43 32-57 (158)
280 1znw_A Guanylate kinase, GMP k 98.0 3.3E-06 1.1E-10 68.2 3.0 26 18-43 19-44 (207)
281 3b85_A Phosphate starvation-in 97.9 1.7E-06 5.7E-11 69.8 1.0 25 19-44 22-46 (208)
282 2zu0_C Probable ATP-dependent 97.9 4.8E-06 1.6E-10 69.9 3.7 25 18-42 45-69 (267)
283 2d2e_A SUFC protein; ABC-ATPas 97.9 4.8E-06 1.6E-10 69.3 3.5 25 18-42 28-52 (250)
284 2ghi_A Transport protein; mult 97.9 5.4E-06 1.9E-10 69.3 3.6 35 8-44 37-71 (260)
285 1lvg_A Guanylate kinase, GMP k 97.9 4.1E-06 1.4E-10 67.1 2.4 25 19-43 4-28 (198)
286 1z6g_A Guanylate kinase; struc 97.9 4.6E-06 1.6E-10 67.9 2.6 34 8-43 14-47 (218)
287 1ls1_A Signal recognition part 97.9 2.9E-05 9.8E-10 66.2 7.5 25 18-42 97-121 (295)
288 1s96_A Guanylate kinase, GMP k 97.8 7.3E-06 2.5E-10 66.6 3.0 27 18-44 15-41 (219)
289 3tr0_A Guanylate kinase, GMP k 97.8 8.3E-06 2.9E-10 65.6 3.2 24 19-42 7-30 (205)
290 2pjz_A Hypothetical protein ST 97.8 9.9E-06 3.4E-10 67.7 3.6 25 19-43 30-54 (263)
291 2jeo_A Uridine-cytidine kinase 97.8 9.1E-06 3.1E-10 67.5 3.3 37 4-42 12-48 (245)
292 3ozx_A RNAse L inhibitor; ATP 97.8 1.4E-05 4.9E-10 73.8 4.9 27 18-44 24-50 (538)
293 4gp7_A Metallophosphoesterase; 97.8 1.2E-05 4.3E-10 62.6 3.5 24 18-41 8-31 (171)
294 1kgd_A CASK, peripheral plasma 97.8 1E-05 3.6E-10 63.6 3.0 25 19-43 5-29 (180)
295 3c8u_A Fructokinase; YP_612366 97.8 1E-05 3.6E-10 65.3 3.1 28 17-44 20-47 (208)
296 3a00_A Guanylate kinase, GMP k 97.8 8.4E-06 2.9E-10 64.6 2.3 25 20-44 2-26 (186)
297 3ohm_A Guanine nucleotide-bind 97.8 0.00041 1.4E-08 59.6 12.9 135 60-210 159-318 (327)
298 1zp6_A Hypothetical protein AT 97.8 1.6E-05 5.6E-10 63.1 3.8 25 18-42 8-32 (191)
299 1yqt_A RNAse L inhibitor; ATP- 97.7 2E-05 6.7E-10 73.0 4.6 28 17-44 45-72 (538)
300 3gd7_A Fusion complex of cysti 97.7 8.2E-06 2.8E-10 72.0 2.0 36 7-44 37-72 (390)
301 3j16_B RLI1P; ribosome recycli 97.7 2.1E-05 7.1E-10 73.7 4.7 28 17-44 101-128 (608)
302 2i3b_A HCR-ntpase, human cance 97.7 1.1E-05 3.7E-10 63.9 2.4 25 20-44 2-26 (189)
303 3g5u_A MCG1178, multidrug resi 97.7 4.2E-05 1.4E-09 78.2 7.0 27 18-44 415-441 (1284)
304 3asz_A Uridine kinase; cytidin 97.7 1.5E-05 5.1E-10 64.5 2.9 26 18-43 5-30 (211)
305 2v9p_A Replication protein E1; 97.7 1.5E-05 5.2E-10 67.8 3.0 25 18-42 125-149 (305)
306 2eyu_A Twitching motility prot 97.7 1.8E-05 6.1E-10 66.2 3.2 27 18-44 24-50 (261)
307 2gza_A Type IV secretion syste 97.7 2.2E-05 7.5E-10 69.0 3.7 35 18-56 174-208 (361)
308 1azs_C GS-alpha; complex (lyas 97.7 0.00011 3.8E-09 64.9 7.9 72 67-150 215-297 (402)
309 2pt7_A CAG-ALFA; ATPase, prote 97.7 2E-05 6.9E-10 68.3 3.2 34 19-56 171-204 (330)
310 3bk7_A ABC transporter ATP-bin 97.7 3.1E-05 1E-09 72.6 4.6 28 17-44 115-142 (607)
311 3ney_A 55 kDa erythrocyte memb 97.7 2.4E-05 8.4E-10 62.0 3.3 26 18-43 18-43 (197)
312 3aez_A Pantothenate kinase; tr 97.6 2.8E-05 9.5E-10 66.8 3.3 28 17-44 88-115 (312)
313 3g5u_A MCG1178, multidrug resi 97.6 2.3E-05 7.7E-10 80.1 2.7 36 7-44 1049-1084(1284)
314 3lnc_A Guanylate kinase, GMP k 97.6 2.2E-05 7.5E-10 64.5 2.1 25 19-43 27-52 (231)
315 2xtz_A Guanine nucleotide-bind 97.5 0.00036 1.2E-08 60.8 9.5 70 69-150 183-263 (354)
316 3b60_A Lipid A export ATP-bind 97.5 3.5E-05 1.2E-09 72.3 3.0 27 18-44 368-394 (582)
317 2bdt_A BH3686; alpha-beta prot 97.5 3.8E-05 1.3E-09 60.9 2.8 22 20-41 3-24 (189)
318 3tau_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 61.3 3.4 26 18-43 7-32 (208)
319 1knq_A Gluconate kinase; ALFA/ 97.5 5.7E-05 1.9E-09 59.0 3.6 26 17-42 6-31 (175)
320 3euj_A Chromosome partition pr 97.5 3.5E-05 1.2E-09 69.7 2.7 25 20-44 30-54 (483)
321 4eun_A Thermoresistant glucoki 97.5 4.4E-05 1.5E-09 61.1 3.0 25 18-42 28-52 (200)
322 2yl4_A ATP-binding cassette SU 97.5 3.3E-05 1.1E-09 72.7 2.5 27 18-44 369-395 (595)
323 4a74_A DNA repair and recombin 97.5 4.8E-05 1.7E-09 62.3 2.9 27 18-44 24-50 (231)
324 2j41_A Guanylate kinase; GMP, 97.5 5.4E-05 1.9E-09 60.8 3.1 25 19-43 6-30 (207)
325 2oap_1 GSPE-2, type II secreti 97.5 5.5E-05 1.9E-09 69.4 3.4 26 19-44 260-285 (511)
326 2bbw_A Adenylate kinase 4, AK4 97.5 6.8E-05 2.3E-09 62.2 3.6 26 19-44 27-55 (246)
327 2npi_A Protein CLP1; CLP1-PCF1 97.5 4.1E-05 1.4E-09 69.3 2.3 27 18-44 137-163 (460)
328 2vp4_A Deoxynucleoside kinase; 97.4 7.8E-05 2.7E-09 61.1 3.7 26 17-42 18-43 (230)
329 2iw3_A Elongation factor 3A; a 97.4 3.4E-05 1.2E-09 75.5 1.7 27 18-44 698-724 (986)
330 3jvv_A Twitching mobility prot 97.4 5.8E-05 2E-09 65.9 3.0 26 19-44 123-148 (356)
331 1sq5_A Pantothenate kinase; P- 97.4 6.8E-05 2.3E-09 64.4 3.4 26 17-42 78-103 (308)
332 1p9r_A General secretion pathw 97.4 5.4E-05 1.9E-09 67.5 2.8 27 18-44 166-192 (418)
333 2ehv_A Hypothetical protein PH 97.4 7.4E-05 2.5E-09 62.0 3.5 23 18-40 29-51 (251)
334 1lw7_A Transcriptional regulat 97.4 5.3E-05 1.8E-09 66.8 2.5 26 19-44 170-195 (365)
335 4e22_A Cytidylate kinase; P-lo 97.4 9.6E-05 3.3E-09 61.5 4.0 27 18-44 26-55 (252)
336 1kag_A SKI, shikimate kinase I 97.4 6.1E-05 2.1E-09 58.7 2.4 24 20-43 5-28 (173)
337 3uie_A Adenylyl-sulfate kinase 97.4 8.7E-05 3E-09 59.4 3.1 26 18-43 24-49 (200)
338 4b4t_L 26S protease subunit RP 97.4 0.00097 3.3E-08 59.6 9.9 24 20-43 216-239 (437)
339 2obl_A ESCN; ATPase, hydrolase 97.4 7.7E-05 2.6E-09 64.9 2.8 28 17-44 69-96 (347)
340 2ewv_A Twitching motility prot 97.3 9.3E-05 3.2E-09 65.2 3.0 27 18-44 135-161 (372)
341 2f1r_A Molybdopterin-guanine d 97.3 4.5E-05 1.5E-09 59.2 0.8 25 20-44 3-27 (171)
342 3thx_B DNA mismatch repair pro 97.3 0.0004 1.4E-08 67.9 7.3 34 6-41 662-695 (918)
343 4b4t_J 26S protease regulatory 97.3 0.0013 4.3E-08 58.0 9.6 24 20-43 183-206 (405)
344 4b4t_I 26S protease regulatory 97.3 0.0017 5.8E-08 57.5 10.4 24 20-43 217-240 (437)
345 1nij_A Hypothetical protein YJ 97.3 0.00018 6E-09 62.1 4.2 24 20-43 5-28 (318)
346 2kjq_A DNAA-related protein; s 97.3 9.5E-05 3.2E-09 56.1 2.1 27 18-44 35-61 (149)
347 3thx_A DNA mismatch repair pro 97.2 0.00068 2.3E-08 66.5 8.3 22 18-39 661-682 (934)
348 3ec2_A DNA replication protein 97.2 0.00011 3.9E-09 57.6 2.3 26 19-44 38-63 (180)
349 3kta_A Chromosome segregation 97.2 0.00013 4.4E-09 57.4 2.6 22 21-42 28-49 (182)
350 3ux8_A Excinuclease ABC, A sub 97.2 0.00019 6.6E-09 68.5 4.3 42 116-163 202-249 (670)
351 4b4t_K 26S protease regulatory 97.2 0.0019 6.5E-08 57.6 10.2 24 20-43 207-230 (428)
352 3tqc_A Pantothenate kinase; bi 97.2 0.00021 7.3E-09 61.2 3.6 26 18-43 91-116 (321)
353 1rz3_A Hypothetical protein rb 97.2 0.00021 7E-09 57.2 3.3 27 17-43 20-46 (201)
354 1jjv_A Dephospho-COA kinase; P 97.2 0.00021 7.3E-09 57.3 3.4 22 20-41 3-24 (206)
355 1qvr_A CLPB protein; coiled co 97.2 0.043 1.5E-06 53.9 20.2 24 20-43 192-215 (854)
356 2dpy_A FLII, flagellum-specifi 97.2 0.00016 5.5E-09 65.0 2.8 29 16-44 154-182 (438)
357 2if2_A Dephospho-COA kinase; a 97.2 0.00016 5.6E-09 57.9 2.6 22 20-41 2-23 (204)
358 1cke_A CK, MSSA, protein (cyti 97.1 0.00019 6.6E-09 58.5 2.9 23 20-42 6-28 (227)
359 1qhl_A Protein (cell division 97.1 2.9E-05 9.9E-10 63.2 -2.4 24 21-44 29-52 (227)
360 2iw3_A Elongation factor 3A; a 97.1 0.00019 6.6E-09 70.2 2.9 25 18-42 460-484 (986)
361 2qt1_A Nicotinamide riboside k 97.1 0.00032 1.1E-08 56.4 3.8 26 18-43 20-45 (207)
362 2qor_A Guanylate kinase; phosp 97.1 0.00025 8.5E-09 56.9 3.0 25 18-42 11-35 (204)
363 3h2y_A GTPase family protein; 97.1 0.0011 3.7E-08 58.3 7.3 97 91-208 57-158 (368)
364 4b4t_H 26S protease regulatory 97.1 0.0018 6.3E-08 57.8 8.5 24 20-43 244-267 (467)
365 3vaa_A Shikimate kinase, SK; s 97.0 0.00037 1.3E-08 55.6 3.5 24 19-42 25-48 (199)
366 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00042 1.4E-08 52.5 3.6 21 20-40 24-44 (149)
367 1sxj_E Activator 1 40 kDa subu 97.0 0.0015 5E-08 57.2 7.6 22 21-42 38-59 (354)
368 4dzz_A Plasmid partitioning pr 97.0 0.015 5E-07 46.3 12.8 69 68-150 75-143 (206)
369 2x8a_A Nuclear valosin-contain 97.0 0.00026 9E-09 59.6 2.5 22 22-43 47-68 (274)
370 1np6_A Molybdopterin-guanine d 97.0 0.00035 1.2E-08 54.3 2.8 23 20-42 7-29 (174)
371 4b4t_M 26S protease regulatory 97.0 0.0017 5.8E-08 58.0 7.3 24 20-43 216-239 (434)
372 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0004 1.4E-08 56.8 2.9 24 19-42 23-46 (235)
373 1ex7_A Guanylate kinase; subst 96.9 0.00044 1.5E-08 54.3 3.0 22 21-42 3-24 (186)
374 1cr0_A DNA primase/helicase; R 96.9 0.00038 1.3E-08 59.4 2.8 27 18-44 34-60 (296)
375 1odf_A YGR205W, hypothetical 3 96.9 0.00053 1.8E-08 58.1 3.5 27 17-43 29-55 (290)
376 2o8b_B DNA mismatch repair pro 96.9 0.0029 9.8E-08 62.9 9.0 24 19-43 789-812 (1022)
377 2pez_A Bifunctional 3'-phospho 96.9 0.00053 1.8E-08 53.6 3.2 24 19-42 5-28 (179)
378 4aby_A DNA repair protein RECN 96.9 0.00015 5.1E-09 65.1 -0.1 21 21-41 62-82 (415)
379 1wb9_A DNA mismatch repair pro 96.9 0.00039 1.3E-08 67.2 2.7 34 6-42 597-630 (800)
380 3qf7_A RAD50; ABC-ATPase, ATPa 96.9 0.00049 1.7E-08 60.5 3.0 20 21-40 25-44 (365)
381 3l82_B F-box only protein 4; T 96.9 0.0012 4.2E-08 52.3 4.9 103 92-208 114-221 (227)
382 3t61_A Gluconokinase; PSI-biol 96.8 0.00045 1.5E-08 55.2 2.5 23 20-42 19-41 (202)
383 3cm0_A Adenylate kinase; ATP-b 96.8 0.00072 2.5E-08 53.1 3.5 23 19-41 4-26 (186)
384 1u0l_A Probable GTPase ENGC; p 96.8 0.0049 1.7E-07 52.5 8.8 85 99-205 80-168 (301)
385 1ixz_A ATP-dependent metallopr 96.8 0.00051 1.8E-08 57.1 2.6 22 22-43 52-73 (254)
386 3kb2_A SPBC2 prophage-derived 96.8 0.00072 2.5E-08 52.3 3.1 23 20-42 2-24 (173)
387 3nwj_A ATSK2; P loop, shikimat 96.8 0.00054 1.8E-08 56.7 2.5 24 19-42 48-71 (250)
388 1ewq_A DNA mismatch repair pro 96.7 0.00052 1.8E-08 65.9 2.5 25 19-43 576-600 (765)
389 2yv5_A YJEQ protein; hydrolase 96.7 0.0067 2.3E-07 51.7 9.2 85 100-203 76-162 (302)
390 3ux8_A Excinuclease ABC, A sub 96.7 0.00057 1.9E-08 65.3 2.7 22 19-40 348-369 (670)
391 2yvu_A Probable adenylyl-sulfa 96.7 0.0012 4.2E-08 51.9 4.2 26 18-43 12-37 (186)
392 3end_A Light-independent proto 96.7 0.0094 3.2E-07 50.9 10.1 23 17-39 39-61 (307)
393 1svm_A Large T antigen; AAA+ f 96.7 0.00073 2.5E-08 59.4 2.9 24 19-42 169-192 (377)
394 1in4_A RUVB, holliday junction 96.7 0.00062 2.1E-08 59.1 2.5 24 20-43 52-75 (334)
395 1y63_A LMAJ004144AAA protein; 96.7 0.0012 4.1E-08 51.9 3.8 24 19-42 10-33 (184)
396 1iy2_A ATP-dependent metallopr 96.7 0.00071 2.4E-08 57.1 2.6 22 22-43 76-97 (278)
397 3lw7_A Adenylate kinase relate 96.7 0.00097 3.3E-08 51.7 3.2 20 20-39 2-21 (179)
398 3ec1_A YQEH GTPase; atnos1, at 96.7 0.002 6.7E-08 56.7 5.4 101 93-209 61-161 (369)
399 2wwf_A Thymidilate kinase, put 96.6 0.0013 4.3E-08 52.9 3.8 26 17-42 8-33 (212)
400 3qks_A DNA double-strand break 96.6 0.0012 4.1E-08 52.8 3.6 21 20-40 24-44 (203)
401 1kht_A Adenylate kinase; phosp 96.6 0.0011 3.8E-08 52.2 3.3 22 20-41 4-25 (192)
402 1uf9_A TT1252 protein; P-loop, 96.6 0.0012 4.2E-08 52.6 3.6 25 18-42 7-31 (203)
403 2jaq_A Deoxyguanosine kinase; 96.6 0.0011 3.8E-08 52.9 3.2 22 21-42 2-23 (205)
404 1n0w_A DNA repair protein RAD5 96.6 0.00096 3.3E-08 54.9 2.9 24 19-42 24-47 (243)
405 1ly1_A Polynucleotide kinase; 96.6 0.0012 4.1E-08 51.5 3.4 22 20-41 3-24 (181)
406 1qhx_A CPT, protein (chloramph 96.6 0.0013 4.3E-08 51.3 3.5 23 20-42 4-26 (178)
407 2cvh_A DNA repair and recombin 96.6 0.001 3.5E-08 53.8 2.9 23 19-41 20-42 (220)
408 3cr8_A Sulfate adenylyltranfer 96.6 0.00067 2.3E-08 62.7 1.8 27 18-44 368-394 (552)
409 2o5v_A DNA replication and rep 96.6 0.0011 3.7E-08 57.9 3.0 21 21-41 28-48 (359)
410 1xjc_A MOBB protein homolog; s 96.6 0.0014 4.9E-08 50.4 3.3 24 19-42 4-27 (169)
411 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.015 5E-07 48.3 9.8 23 20-42 40-62 (262)
412 3trf_A Shikimate kinase, SK; a 96.5 0.0014 4.8E-08 51.4 3.3 22 20-41 6-27 (185)
413 2rhm_A Putative kinase; P-loop 96.5 0.0015 5E-08 51.6 3.4 23 19-41 5-27 (193)
414 1ukz_A Uridylate kinase; trans 96.5 0.0021 7.2E-08 51.3 4.3 25 17-41 13-37 (203)
415 1nlf_A Regulatory protein REPA 96.5 0.0011 3.8E-08 55.9 2.7 25 18-42 29-53 (279)
416 1aky_A Adenylate kinase; ATP:A 96.5 0.0016 5.4E-08 52.8 3.5 24 18-41 3-26 (220)
417 1w1w_A Structural maintenance 96.5 0.0012 4E-08 59.5 2.9 25 19-43 26-50 (430)
418 1gvn_B Zeta; postsegregational 96.5 0.0018 6.1E-08 54.9 3.8 24 18-41 32-55 (287)
419 1via_A Shikimate kinase; struc 96.5 0.0014 4.6E-08 51.0 2.8 22 21-42 6-27 (175)
420 2v54_A DTMP kinase, thymidylat 96.5 0.0018 6.3E-08 51.6 3.6 24 19-42 4-27 (204)
421 3qkt_A DNA double-strand break 96.4 0.0018 6E-08 56.3 3.6 21 20-40 24-44 (339)
422 1nks_A Adenylate kinase; therm 96.4 0.0017 5.7E-08 51.3 3.2 23 20-42 2-24 (194)
423 1vht_A Dephospho-COA kinase; s 96.4 0.0021 7.1E-08 52.0 3.8 23 19-41 4-26 (218)
424 2plr_A DTMP kinase, probable t 96.4 0.002 6.9E-08 51.6 3.6 24 19-42 4-27 (213)
425 1tf7_A KAIC; homohexamer, hexa 96.4 0.0013 4.4E-08 60.9 2.7 25 18-42 38-64 (525)
426 1m7g_A Adenylylsulfate kinase; 96.4 0.0017 5.7E-08 52.3 3.1 24 19-42 25-48 (211)
427 3iij_A Coilin-interacting nucl 96.4 0.0017 5.9E-08 50.7 3.0 22 19-40 11-32 (180)
428 1e69_A Chromosome segregation 96.4 0.0014 4.9E-08 56.5 2.7 20 21-40 26-45 (322)
429 2cdn_A Adenylate kinase; phosp 96.4 0.0024 8.2E-08 50.9 3.9 24 18-41 19-42 (201)
430 2c95_A Adenylate kinase 1; tra 96.4 0.0019 6.6E-08 51.1 3.3 23 19-41 9-31 (196)
431 2ze6_A Isopentenyl transferase 96.4 0.002 6.7E-08 53.5 3.4 23 20-42 2-24 (253)
432 1tev_A UMP-CMP kinase; ploop, 96.4 0.0021 7.3E-08 50.7 3.5 22 20-41 4-25 (196)
433 1puj_A YLQF, conserved hypothe 96.4 0.0053 1.8E-07 51.7 6.0 88 98-209 18-105 (282)
434 1q3t_A Cytidylate kinase; nucl 96.4 0.0018 6.3E-08 53.0 3.1 24 18-41 15-38 (236)
435 3fb4_A Adenylate kinase; psych 96.4 0.0019 6.6E-08 52.0 3.2 21 21-41 2-22 (216)
436 1fnn_A CDC6P, cell division co 96.4 0.022 7.6E-07 50.2 10.4 23 21-43 46-68 (389)
437 4eaq_A DTMP kinase, thymidylat 96.3 0.0025 8.5E-08 52.0 3.6 26 18-43 25-50 (229)
438 3dl0_A Adenylate kinase; phosp 96.3 0.0022 7.4E-08 51.8 3.2 21 21-41 2-22 (216)
439 3h4m_A Proteasome-activating n 96.3 0.016 5.5E-07 48.8 8.7 23 20-42 52-74 (285)
440 1pzn_A RAD51, DNA repair and r 96.3 0.0019 6.4E-08 56.4 2.9 26 18-43 130-155 (349)
441 3r20_A Cytidylate kinase; stru 96.3 0.0025 8.5E-08 51.9 3.3 23 19-41 9-31 (233)
442 1njg_A DNA polymerase III subu 96.3 0.0072 2.4E-07 49.3 6.3 22 21-42 47-68 (250)
443 2p5t_B PEZT; postsegregational 96.3 0.002 6.8E-08 53.5 2.8 25 18-42 31-55 (253)
444 1gtv_A TMK, thymidylate kinase 96.2 0.001 3.5E-08 53.6 0.9 22 21-42 2-23 (214)
445 1zd8_A GTP:AMP phosphotransfer 96.2 0.0024 8.4E-08 51.9 3.2 22 20-41 8-29 (227)
446 2pt5_A Shikimate kinase, SK; a 96.2 0.0027 9.2E-08 48.8 3.2 21 21-41 2-22 (168)
447 1nn5_A Similar to deoxythymidy 96.2 0.0027 9.2E-08 51.0 3.3 24 19-42 9-32 (215)
448 1zak_A Adenylate kinase; ATP:A 96.2 0.0025 8.7E-08 51.6 3.0 22 20-41 6-27 (222)
449 2bwj_A Adenylate kinase 5; pho 96.2 0.0028 9.7E-08 50.2 3.2 22 20-41 13-34 (199)
450 1lv7_A FTSH; alpha/beta domain 96.1 0.0024 8.2E-08 53.1 2.5 23 20-42 46-68 (257)
451 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.032 1.1E-06 47.9 9.7 23 20-42 46-68 (322)
452 2z0h_A DTMP kinase, thymidylat 96.1 0.0032 1.1E-07 49.8 3.2 22 21-42 2-23 (197)
453 1e4v_A Adenylate kinase; trans 96.1 0.003 1E-07 50.9 3.0 21 21-41 2-22 (214)
454 1qf9_A UMP/CMP kinase, protein 96.1 0.0042 1.4E-07 48.9 3.8 22 20-41 7-28 (194)
455 1ak2_A Adenylate kinase isoenz 96.1 0.0039 1.3E-07 51.0 3.6 24 18-41 15-38 (233)
456 3tlx_A Adenylate kinase 2; str 96.1 0.0042 1.4E-07 51.1 3.8 24 18-41 28-51 (243)
457 2vli_A Antibiotic resistance p 96.1 0.0025 8.7E-08 49.8 2.4 22 20-41 6-27 (183)
458 1e6c_A Shikimate kinase; phosp 96.1 0.003 1E-07 48.8 2.8 22 20-41 3-24 (173)
459 2pbr_A DTMP kinase, thymidylat 96.1 0.0034 1.2E-07 49.5 3.2 21 21-41 2-22 (195)
460 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.004 1.4E-07 51.8 3.6 23 19-41 4-26 (260)
461 3cwq_A Para family chromosome 96.0 0.04 1.4E-06 44.0 9.4 66 68-151 67-134 (209)
462 2grj_A Dephospho-COA kinase; T 96.0 0.0039 1.3E-07 49.3 3.3 24 18-41 11-34 (192)
463 2iyv_A Shikimate kinase, SK; t 96.0 0.0031 1.1E-07 49.4 2.7 22 20-41 3-24 (184)
464 2xb4_A Adenylate kinase; ATP-b 96.0 0.0038 1.3E-07 50.7 3.2 21 21-41 2-22 (223)
465 3cf2_A TER ATPase, transitiona 96.0 0.02 6.7E-07 55.3 8.3 24 20-43 239-262 (806)
466 3be4_A Adenylate kinase; malar 95.9 0.0038 1.3E-07 50.4 3.0 22 20-41 6-27 (217)
467 1zuh_A Shikimate kinase; alpha 95.9 0.0045 1.5E-07 47.6 3.3 22 20-41 8-29 (168)
468 1r6b_X CLPA protein; AAA+, N-t 95.9 0.014 4.7E-07 56.6 7.1 25 19-43 207-231 (758)
469 1uj2_A Uridine-cytidine kinase 95.9 0.0052 1.8E-07 50.9 3.6 24 18-41 21-44 (252)
470 2f6r_A COA synthase, bifunctio 95.9 0.0061 2.1E-07 51.4 4.0 23 18-40 74-96 (281)
471 1jr3_A DNA polymerase III subu 95.8 0.011 3.7E-07 52.0 5.7 22 21-42 40-61 (373)
472 1jbk_A CLPB protein; beta barr 95.8 0.0059 2E-07 47.7 3.5 23 20-42 44-66 (195)
473 2qmh_A HPR kinase/phosphorylas 95.8 0.0063 2.2E-07 47.9 3.5 24 19-42 34-57 (205)
474 1tf7_A KAIC; homohexamer, hexa 95.7 0.0044 1.5E-07 57.3 2.8 27 18-44 280-306 (525)
475 3ake_A Cytidylate kinase; CMP 95.7 0.0059 2E-07 48.7 3.2 21 21-41 4-24 (208)
476 3te6_A Regulatory protein SIR3 95.7 0.043 1.5E-06 46.9 8.6 26 18-43 44-69 (318)
477 3auy_A DNA double-strand break 95.7 0.006 2E-07 53.7 3.4 21 20-40 26-46 (371)
478 3sr0_A Adenylate kinase; phosp 95.7 0.0063 2.1E-07 48.6 3.2 22 21-42 2-23 (206)
479 3a8t_A Adenylate isopentenyltr 95.7 0.0077 2.6E-07 51.7 3.8 24 20-43 41-64 (339)
480 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0072 2.5E-07 52.2 3.5 26 18-43 23-48 (359)
481 2w58_A DNAI, primosome compone 95.6 0.0068 2.3E-07 48.2 3.2 24 20-43 55-78 (202)
482 3bos_A Putative DNA replicatio 95.6 0.0069 2.4E-07 49.4 3.3 25 19-43 52-76 (242)
483 2ygr_A Uvrabc system protein A 95.6 0.0049 1.7E-07 60.4 2.6 22 19-40 668-689 (993)
484 3exa_A TRNA delta(2)-isopenten 95.6 0.008 2.8E-07 50.9 3.6 24 20-43 4-27 (322)
485 3vfd_A Spastin; ATPase, microt 95.6 0.046 1.6E-06 48.4 8.7 23 20-42 149-171 (389)
486 3m6a_A ATP-dependent protease 95.5 0.006 2.1E-07 56.6 2.9 26 18-43 107-132 (543)
487 2dr3_A UPF0273 protein PH0284; 95.5 0.0076 2.6E-07 49.5 3.3 22 19-40 23-44 (247)
488 1a7j_A Phosphoribulokinase; tr 95.5 0.0047 1.6E-07 52.3 1.9 23 19-41 5-27 (290)
489 3cf0_A Transitional endoplasmi 95.5 0.0067 2.3E-07 51.7 2.9 23 20-42 50-72 (301)
490 3crm_A TRNA delta(2)-isopenten 95.5 0.0085 2.9E-07 51.2 3.4 23 20-42 6-28 (323)
491 3umf_A Adenylate kinase; rossm 95.5 0.0096 3.3E-07 47.9 3.5 23 20-42 30-52 (217)
492 2p65_A Hypothetical protein PF 95.5 0.0069 2.4E-07 47.1 2.7 24 19-42 43-66 (187)
493 3foz_A TRNA delta(2)-isopenten 95.5 0.011 3.7E-07 50.1 3.9 23 20-42 11-33 (316)
494 4fcw_A Chaperone protein CLPB; 95.5 0.0098 3.4E-07 50.8 3.8 25 19-43 47-71 (311)
495 3d3q_A TRNA delta(2)-isopenten 95.4 0.0086 3E-07 51.5 3.3 23 20-42 8-30 (340)
496 2vf7_A UVRA2, excinuclease ABC 95.4 0.0036 1.2E-07 60.7 0.9 23 19-41 523-546 (842)
497 3b9p_A CG5977-PA, isoform A; A 95.4 0.0077 2.6E-07 51.1 2.9 23 20-42 55-77 (297)
498 3lv8_A DTMP kinase, thymidylat 95.4 0.0096 3.3E-07 48.6 3.2 31 12-42 20-50 (236)
499 1ltq_A Polynucleotide kinase; 95.4 0.0095 3.3E-07 50.7 3.4 22 20-41 3-24 (301)
500 2dhr_A FTSH; AAA+ protein, hex 95.3 0.0066 2.3E-07 55.4 2.4 23 21-43 66-88 (499)
No 1
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.96 E-value=1.4e-28 Score=206.49 Aligned_cols=203 Identities=32% Similarity=0.562 Sum_probs=155.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc-HHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~-~~~~~~~~~ 95 (352)
....+|+|||.+|+|||||+|+|+|...+.......++|..+....+.+ ++..+.||||||+.+..... ......+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4568999999999999999999999987655444444566666666666 78899999999998754332 233455666
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccccc-ceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
++..+..++|++++|+|++ +++..+...++++...++.... .|++|++||+|+.. ..+++++.......++.++.
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHHH
Confidence 6655668999999999998 7999999999999998876432 38888999999864 45667775444456889999
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGAT 225 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~ 225 (352)
.|+.+|+.|++... ++..+.++.+|++.|.+++..+++.+|.++++...+
T Consensus 174 ~~g~~~~~~~~~~~-~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~ 223 (247)
T 3lxw_A 174 ECGGRVCAFDNRAT-GREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQ 223 (247)
T ss_dssp HTTTCEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HcCCeEEEEeCCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 99999999988753 556689999999999999999999999999877554
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=203.54 Aligned_cols=204 Identities=35% Similarity=0.652 Sum_probs=143.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.....+|+|+|.+|+|||||+|+|+|...+.......++|..+....+.+ ++..+.||||||+.+.......+...+..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34568999999999999999999999887544433334566666666666 78899999999999877777777788888
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
.+..+++++|++++|+|++ +++..+..++..+...++.....|+++|+||+|.... ..+++++.. ....+..++..
T Consensus 105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~~ 180 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMDI 180 (239)
T ss_dssp HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHHH
Confidence 8888888999999999998 7887888888888887776555689999999999876 677777764 34468889999
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGAT 225 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~ 225 (352)
|+.+|+.|++.. .++....++.+|++.|..++..+++.+|..+++...+
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e 229 (239)
T 3lxx_A 181 FGDRYCALNNKA-TGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE 229 (239)
T ss_dssp HSSSEEECCTTC-CHHHHHHHHHHHHHHHHHHHHHCTTSCC---------
T ss_pred cCCEEEEEECCC-CccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 999999988764 3455678999999999999999888888888766443
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.95 E-value=5.6e-26 Score=192.88 Aligned_cols=202 Identities=30% Similarity=0.574 Sum_probs=153.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
+.....+|+|+|.+|+|||||+|.|+|...+.......++|..+....+.+ .+..+.||||||+.+.........+.+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 344568999999999999999999999876554433333455555555555 7889999999999887655555556667
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe-CCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n-k~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..+..++.++|++++|+|++ +++..+...+..+...++.....|.++|+| |+|+... .+.+++.......+..++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHHHhcchHHHHHHH
Confidence 77777778999999999998 688888888888888877554457777777 9998743 455555543334566788
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCchHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR 222 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 222 (352)
..++.++..|++ .++||.++.++.+|++.|.+.+..+.+.+|..+.+.
T Consensus 173 ~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~ 220 (260)
T 2xtp_A 173 AACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYS 220 (260)
T ss_dssp HHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHH
T ss_pred HHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHH
Confidence 888888766666 788999999999999999999988776778766544
No 4
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=3.2e-20 Score=153.74 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=115.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~--~~~~~ 93 (352)
....+|+|+|.+|+|||||+|.|+|... ..... ..+.|............+..+.||||||+.+....... ....+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASK-TPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTC-CCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecC-CCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4568999999999999999999999862 11212 22234444444443235678999999998775433321 11222
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..........+|++++|+|+++.++..+..++.++.. .+. |+++|+||+|+... ..+...+.. +...+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~~----p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~l 173 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-TGK----PIHSLLTKCDKLTR--QESINALRA-----TQKSL 173 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GCC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cCC----CEEEEEeccccCCh--hhHHHHHHH-----HHHHH
Confidence 2222223456899999999997888888888777765 232 89999999999865 554444443 33333
Q ss_pred Hhc-----CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLC-----DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~-----~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+ ..... ..++||+++.++.+|++.|.+.+..
T Consensus 174 ~~~~~~~~~~~~~----~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 174 DAYRDAGYAGKLT----VQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHTCCSCEE----EEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HhhhhcccCCCCe----EEEeecCCCcCHHHHHHHHHHhcCc
Confidence 332 11111 1256888899999999999888754
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.85 E-value=6.9e-21 Score=164.80 Aligned_cols=181 Identities=15% Similarity=0.219 Sum_probs=122.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
++.+...|+|+|.+|+|||||+|.|+|..... .+....|+........... +..+.+|||||+.+... ...+.+.+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i--~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~l~~~~ 82 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI--ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDVLGHSM 82 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccc--cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chhHHHHH
Confidence 33455899999999999999999999987522 2222333333233332225 88999999999987542 23445666
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHH-HHHHHHhhcccccceEEEEEeCCCCC-CcchhcHHHHhcccCChhHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~ilv~nk~D~~-~~~~~~l~~~l~~~~~~~~~~ 171 (352)
......++..+|++++|+|+++..+..+... +..+.. .+ .|+++|+||+|+. .. ..+.+.+..
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-~~----~pvilV~NK~Dl~~~~--~~~~~~~~~-------- 147 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-LN----KPVIVVINKIDKIGPA--KNVLPLIDE-------- 147 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-GC----CCEEEEEECGGGSSSG--GGGHHHHHH--------
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-cC----CCEEEEEECccCCCCH--HHHHHHHHH--------
Confidence 6666666778999999999997788777765 565554 22 2899999999997 44 444444333
Q ss_pred HHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCCCCch
Q 018636 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD 218 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~~~~~ 218 (352)
+...++. +....++||.++.++.+|++.+...++.. ..+|..
T Consensus 148 l~~~~~~----~~~i~~vSA~~g~gv~~L~~~l~~~l~~~-~~~~~~ 189 (308)
T 3iev_A 148 IHKKHPE----LTEIVPISALKGANLDELVKTILKYLPEG-EPLFPE 189 (308)
T ss_dssp HHHHCTT----CCCEEECBTTTTBSHHHHHHHHHHHSCBC-CCSSCT
T ss_pred HHHhccC----CCeEEEEeCCCCCCHHHHHHHHHHhCccC-CCCCCc
Confidence 2233321 11223568899999999999999988653 334444
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=7.1e-20 Score=157.50 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=115.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|+|||||+|.|+|...... +....|+......+....+..+.+|||||+.+.. ..+.+.+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~iv--s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPI--SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCC--CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeee--cCCCCceeEEEEEEEEeCCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 36899999999999999999999875222 2222233322222222367889999999998743 244555666666
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhc-HHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.++.++|++++|+|++++++..+...++.+...+.. .|+++|+||+|+... .. +.+.+.. + ++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~---~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~~ 145 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKY--PEEAMKAYHE--------L---LP 145 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSS--HHHHHHHHHH--------T---ST
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCC---CCEEEEEECcccCCc--hHHHHHHHHH--------h---cC
Confidence 677899999999999877888877766766654321 299999999999865 33 3333322 1 11
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. ....++||.++.++.+|++.+...++.
T Consensus 146 ~-----~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 E-----AEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp T-----SEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred c-----CcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 1 112367899999999999999887654
No 7
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.82 E-value=9e-19 Score=141.78 Aligned_cols=169 Identities=16% Similarity=0.256 Sum_probs=104.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH-
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK- 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~- 95 (352)
....+|+|+|.+|+|||||+|.|++...........+.|.....+ .. +..+.+|||||+.+....... ...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~ 95 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--II--NDELHFVDVPGYGFAKVSKSE-REAWGRM 95 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EE--TTTEEEEECCCBCCCSSCHHH-HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EE--CCcEEEEECCCCCccccCHHH-HHHHHHH
Confidence 456899999999999999999999875211111111122222222 22 347889999998876543321 222222
Q ss_pred --HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 96 --CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 --~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
........+|++++|+|++++.+..+...+.++.. .+. |+++|+||+|+... ..+...... +...+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~----p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~ 163 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YGI----PVIVIATKADKIPK--GKWDKHAKV-----VRQTL 163 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTC----CEEEEEECGGGSCG--GGHHHHHHH-----HHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC----CEEEEEECcccCCh--HHHHHHHHH-----HHHHH
Confidence 22222245699999999987788877766666654 222 89999999999866 555544333 33333
Q ss_pred Hhc-CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 174 QLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 174 ~~~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
... +..++ .+|+.++.++.+|++.+.+.+
T Consensus 164 ~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 164 NIDPEDELI------LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCTTSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCCceE------EEEccCCCCHHHHHHHHHHHh
Confidence 221 22222 467888999999999987765
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.81 E-value=1.6e-18 Score=140.17 Aligned_cols=170 Identities=15% Similarity=0.171 Sum_probs=112.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~--~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++.......+..+ .|...... . .+..+.+|||||+......... ....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~t~~~~~~--~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-KTRSINFY--L--VNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEE--E--ETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCC-CccCeEEE--E--ECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 455799999999999999999999886422222222 22222221 1 2456789999998765433221 122222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.........++++++|+|++...+..+...+.++... +. |+++|+||+|+... ..+...... +.....
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~~----p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~~ 163 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-NI----PFTIVLTKMDKVKM--SERAKKLEE-----HRKVFS 163 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCG--GGHHHHHHH-----HHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-CC----CEEEEEEChhcCCh--HHHHHHHHH-----HHHHHh
Confidence 2223333567999999999877777777777776654 32 89999999999865 555554444 444554
Q ss_pred hcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+. .++ ++||.++.++.++++.+.+.+.
T Consensus 164 ~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 164 KYGEYTII------PTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SSCCSCEE------ECCTTTCTTHHHHHHHHHHHHC
T ss_pred hcCCCceE------EEecCCCCCHHHHHHHHHHHhh
Confidence 4332 333 4688889999999999988764
No 9
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.78 E-value=5.5e-18 Score=143.45 Aligned_cols=153 Identities=24% Similarity=0.313 Sum_probs=107.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|+|+|......... .+.|.......+.+ ++..++||||||+.+.........+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPF-QAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSS-CC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 458999999999999999999999875222221 22233444444455 7889999999999876554445455555444
Q ss_pred hcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
. ..++|++++|++++ .+++..+..++..+...++.....|+++|+||+|+...+...+++++.. ....+..++..
T Consensus 113 ~--~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~ 188 (262)
T 3def_A 113 V--NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRA 188 (262)
T ss_dssp T--TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHH
T ss_pred h--cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHH
Confidence 2 35789999998887 4678888889999999888776679999999999864433566666653 11224444443
No 10
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=6.5e-18 Score=143.73 Aligned_cols=196 Identities=22% Similarity=0.325 Sum_probs=122.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|+|..........+ .|.......+.. .+..+.||||||+.+...........+..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~-~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQS-EGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSC-CCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-cceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 45899999999999999999999887533322222 233333333444 6788999999999875443344344443332
Q ss_pred hcccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...++|+++||++++ .+++..+..++..+...++...+.|+++|+||+|+.......+++++.. ....+...+...
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~~ 192 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG 192 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHHh
Confidence 245789999998887 3677888888888888888665569999999999876532366666543 111233333310
Q ss_pred C----------CcEEEEcCCCccc---------ccchHHHHHHHHHHHHHHHhcCCCCCch
Q 018636 177 D----------NRCVLFDNKTKDE---------AKGTEQVRQLLSLVNSVIVQNGGQPYTD 218 (352)
Q Consensus 177 ~----------~~~~~~~~~~~~s---------a~~~~~~~~L~~~i~~~~~~~~~~~~~~ 218 (352)
. -.+.+..+..... .........|+..|..++...+...+.+
T Consensus 193 ~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d 253 (270)
T 1h65_A 193 ASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD 253 (270)
T ss_dssp TTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECC
T ss_pred hhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecC
Confidence 0 1223332221110 0112246688888888887665555443
No 11
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.77 E-value=5.8e-18 Score=144.31 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=98.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC----CCcceeeEeEEEEee-CC--ceEEEEeCCCCCCCCCCcH---
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE--- 87 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~~~lvDtpG~~~~~~~~~--- 87 (352)
...+|+|+|.+|+|||||+|+|++...+...... ...|+.......... ++ ..++||||||+.+......
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3479999999999999999999998775443200 012222222222221 33 3789999999976533221
Q ss_pred HHHH----HHHHHHhc---------ccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 88 FVGK----EIVKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 88 ~~~~----~~~~~~~~---------~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
.+.. .+..++.. ....+|+++|+++.+ ..+...+...++.+.. + .|+++|+||+|....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--~----~pvi~V~nK~D~~~~- 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--K----VNIIPLIAKADTLTP- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT--T----SCEEEEESSGGGSCH-
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc--c----CCEEEEEeccCCCCH-
Confidence 1221 11222221 123578999998766 4688888777776654 2 299999999999866
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..+... +...+...+..++ ..|+.++.++.++++.+...++
T Consensus 160 -~e~~~~~~~-----i~~~l~~~~i~v~------~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 -EECQQFKKQ-----IMKEIQEHKIKIY------EFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCC------CC-----------CHHHHHTCS
T ss_pred -HHHHHHHHH-----HHHHHHHcCCeEE------cCCCCCChhHHHHHHHHhcCCC
Confidence 666665555 5555555554443 3456678899999998887654
No 12
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=5.4e-18 Score=146.04 Aligned_cols=167 Identities=16% Similarity=0.211 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCC-CCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~-~~~~~~~~~~~~~~~~~ 97 (352)
..+|+|+|++|+|||||+|.|+|...... +....|+......+...++..+.++||||+. .. ...+...+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~--s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISIT--SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEEC--CCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccc--CCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence 36899999999999999999999875221 2222233222222222267789999999976 21 112222333334
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..++..+|++++|+|++. ++.++...++.+.. .+ .|+++++||+|.... ...+.+.+.. +....+
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-~~----~P~ilvlNK~D~~~~-~~~~~~~l~~--------l~~~~~ 147 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-GK----APVILAVNKVDNVQE-KADLLPHLQF--------LASQMN 147 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-SS----SCEEEEEESTTTCCC-HHHHHHHHHH--------HHTTSC
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-cC----CCEEEEEECcccCcc-HHHHHHHHHH--------HHHhcC
Confidence 556678999999999985 98888766655442 12 299999999999862 1333333332 322223
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. ...+.||+++.++.+|++.+...++.
T Consensus 148 ~~-----~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 148 FL-----DIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CS-----EEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred cC-----ceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 21 12357888899999999999887654
No 13
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.76 E-value=8.6e-18 Score=133.10 Aligned_cols=163 Identities=19% Similarity=0.152 Sum_probs=100.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+.+|+|+|.+|+|||||+|.|++.......... +.|.......+.+ ++..+.+|||||+..... .+........
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~-~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~ 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIA-GTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIERA 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSST-TCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCC-CceeceeeEEEEE-CCeEEEEEECCCcccchh---HHHHHHHHHH
Confidence 3579999999999999999999987532111111 1233333333444 677889999999865321 1111111112
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+|++++.+.....++..+....... .|+++|+||+|+... .. ++... .
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~--~~--~~~~~-------------~ 138 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--TL--GMSEV-------------N 138 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--CC--EEEEE-------------T
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCcc--hh--hhhhc-------------c
Confidence 23356889999999998555544555666555543322 389999999997532 00 00000 1
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
... ...+||+++.++.+|++.+.+.+.
T Consensus 139 ~~~-----~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 139 GHA-----LIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TEE-----EEECCTTTCTTHHHHHHHHHHHC-
T ss_pred CCc-----eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 111 135788999999999999877653
No 14
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=3.6e-17 Score=135.72 Aligned_cols=173 Identities=16% Similarity=0.104 Sum_probs=100.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.|++.... .... ...|.......... .+..+.+|||||+.+.......... . ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~-~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~-~-~~ 101 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSY-SFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE-M-TT 101 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC------CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH-H-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCC-CCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH-H-HH
Confidence 35689999999999999999999987642 1111 12233333333334 5678899999998653211111000 1 11
Q ss_pred HhcccCCccEEEEEEecCCCCCH---HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQ---EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
+...+..+|++++|+|++++.+- ....++..+...+. ..|+++|+||+|+... ..+...... .+..+.
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~----~~~~~~ 172 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNM--DSLSIDNKL----LIKQIL 172 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC----CCCHHHHH----HHHHHH
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCc--hhhHHHHHH----HHHHHH
Confidence 11124577999999999854432 22334444433221 2389999999999754 222111111 133344
Q ss_pred HhcC--CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~--~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+ ..++ .+||+++.++.+|++.+.+.+.
T Consensus 173 ~~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 173 DNVKNPIKFS------SFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp HHCCSCEEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhcCCCceEE------EEecccCCCHHHHHHHHHHHHH
Confidence 4433 2222 5688889999999998877663
No 15
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.75 E-value=2.8e-17 Score=130.88 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=103.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++..+.+|||||....... .
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~-----------~ 72 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ--EAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM-----------R 72 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCS--SCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS-----------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccC--CCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH-----------H
Confidence 458999999999999999999998765221 1122233333334444 6788899999997653211 1
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+|+++.........+..+.. .. .|+++|+||+|+.......+.+.+.. ...+...++
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~---~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~ 142 (178)
T 2lkc_A 73 ARGAQVTDIVILVVAADDGVMPQTVEAINHAKA---AN--VPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEWG 142 (178)
T ss_dssp CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG---GS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTTT
T ss_pred HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh---CC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHcC
Confidence 234568899999999986666666555554432 22 28999999999975421222222222 100001111
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+.+ .++||+++.++.+|++.+.+.+..
T Consensus 143 ~~~~~----~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 143 GDTIF----CKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SSEEE----EECCSSSSHHHHHHHHHHHHHHHH
T ss_pred CcccE----EEEecCCCCCHHHHHHHHHHhhhh
Confidence 11111 256888999999999998887654
No 16
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=1.9e-17 Score=130.94 Aligned_cols=163 Identities=14% Similarity=0.081 Sum_probs=99.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++..... ...|.......+.+ ++..+.+|||||.... ....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----------~~~~ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RPYW 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEE-CCEEEEEEECCCChhh-----------hHHH
Confidence 45899999999999999999998765421 12233333444445 6788999999996431 1223
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-... .++..+..... ....|+++|+||+|+... ....+.... +. ....
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~ 138 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPAL 138 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGGC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC--CCHHHHHHH-----hC--chhc
Confidence 3456789999999999854333222 22222221110 012399999999999765 333222111 10 0011
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+ ....+|+.++.++.++++.+.+.+..
T Consensus 139 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 139 KDRKW---QIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTSCE---EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCce---EEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 11111 12256888899999999998887654
No 17
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.75 E-value=4.8e-17 Score=131.96 Aligned_cols=169 Identities=13% Similarity=0.056 Sum_probs=101.6
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
.+.....+|+|+|..|+|||||+|.|++...... ....|.......+.. .+..+.+|||||....
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~----------- 76 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---HITATVGYNVETFEK-GRVAFTVFDMGGAKKF----------- 76 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC-------CCCCCSSEEEEEEEE-TTEEEEEEEECCSGGG-----------
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---ccccccceeEEEEEe-CCEEEEEEECCCCHhH-----------
Confidence 3445668999999999999999999998775221 112233333333443 6788999999996431
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc------cccceEEEEEeCCCCCCcchhcHHHHhcccCC
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK------NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~------~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~ 166 (352)
.......+.++|++++|+|+++.-+-... .++..+...... ....|++||+||+|+... ...+++...
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~--- 151 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI--- 151 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH---
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH---
Confidence 22233456789999999999844332222 233332221100 012389999999999866 444433332
Q ss_pred hhHH--HHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 167 KPLK--EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 167 ~~~~--~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+. .+....+..+ ..+||+++.++.++++.+.+.+..
T Consensus 152 --~~~~~~~~~~~~~~------~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 152 --LDLTTLMGDHPFVI------FASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp --HTHHHHHTTSCEEE------EECBTTTTBTHHHHHHHHHHHHHH
T ss_pred --hcchhhccCCeeEE------EEeeCCCccCHHHHHHHHHHHHHH
Confidence 21 1112222222 256888899999999999887654
No 18
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.74 E-value=2e-17 Score=129.40 Aligned_cols=159 Identities=21% Similarity=0.250 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|.+|+|||||+|.|++........ ..+.+.......+.. ++..+.+|||||....... ...+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-VPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKW----EKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSSC----CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccC-CCCceecceEEEEEe-CCceEEEEECCCCCCccch----HHHHHHHHHH
Confidence 589999999999999999999876311111 112233333344444 6778999999998764321 1223333334
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
.+..+|++++|+|++++++..+.....++.. .+. |+++|+||+|+... . +.... +. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~----p~ilv~nK~Dl~~~--~---~~~~~--------~~-~~~~- 135 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR-KGK----PVILVATKVDDPKH--E---LYLGP--------LY-GLGF- 135 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-HTC----CEEEEEECCCSGGG--G---GGCGG--------GG-GGSS-
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHh-cCC----CEEEEEECcccccc--h---HhHHH--------HH-hCCC-
Confidence 5578999999999997788777666666655 222 89999999998754 1 11111 11 1121
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....++|++++.++.++++.+.+.+
T Consensus 136 ----~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 136 ----GDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ----CCeEEEecccCCChHHHHHHHHHhC
Confidence 1234678889999999999887653
No 19
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=1.9e-17 Score=151.10 Aligned_cols=180 Identities=17% Similarity=0.193 Sum_probs=114.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH-
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK- 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~- 95 (352)
....+|+++|.+|+|||||+|.|+|...+......+ .|.......+.+ ++..+.+|||||+......... .+.+..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~g-tt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~-~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG-TTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYET-TEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCC-CSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCC-eEEEEEEEEEEE-CCceEEEEECCCCCcCcccchH-HHHHHHH
Confidence 345899999999999999999999886433322222 233333333444 7789999999998653211100 011111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....++..+|++++|+|++..++..+..++..+.. .+. |+++|+||||+........+++... +...+..
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~~----~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~ 339 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AGK----AVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQF 339 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTC----EEEEEEECGGGSCCCSSHHHHHHHH-----HHHHCGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cCC----CEEEEEEChhcCCCchHHHHHHHHH-----HHHhccc
Confidence 11123457899999999998888888888777765 343 8999999999986422333433332 3333332
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~~ 214 (352)
.+...+ .++||+++.++.+|++.+.+.+......
T Consensus 340 ~~~~~~-----~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 340 LDYAPI-----LFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp GTTSCE-----EECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred CCCCCE-----EEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 222222 2578999999999999999888664443
No 20
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.74 E-value=1.5e-17 Score=139.85 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~--~~~~~~~~~~ 97 (352)
.+|+|+|.+|||||||+|.|+|...... ..+ ++|.......+.+ ++..+.+|||||+.+...... ...+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~-~~p-g~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG-NWP-GVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE-ECT-TSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc-CCC-CceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 4899999999999999999999864322 222 3454555555555 678999999999987643210 1122222222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
. ....+|++++|+|+++ + .........+... + .|+++|+||+|.... ..+.. ....+....+
T Consensus 79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~~-~----~pvilv~NK~Dl~~~--~~~~~--------~~~~l~~~lg 140 (256)
T 3iby_A 79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFEL-G----KPVVVALNMMDIAEH--RGISI--------DTEKLESLLG 140 (256)
T ss_dssp H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTTS-C----SCEEEEEECHHHHHH--TTCEE--------CHHHHHHHHC
T ss_pred H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHHc-C----CCEEEEEEChhcCCc--CCcHH--------HHHHHHHHcC
Confidence 1 1268999999999983 2 1122222233221 2 399999999997643 11111 1222333334
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
..++ ++||.++.++.+|++.+.+.
T Consensus 141 ~~vi------~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CSVI------PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHTC
T ss_pred CCEE------EEECCCCCCHHHHHHHHHhh
Confidence 3333 57889999999999999887
No 21
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=4.4e-17 Score=130.76 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=101.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.+++... . ....|.......+.+ ++..+.+|||||.. .+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~---~~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV--D---TISPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC--S---SCCCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--C---cccccCccceEEEEE-CCEEEEEEECCCCH-----------hHHHH
Confidence 3558999999999999999999998762 1 111233333444445 67889999999953 23333
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|++++-+-.+. .++..+..... ....|+++|+||+|+... ...++.... +. +..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~ 148 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEA-----LE--LDS 148 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC--CCHHHHHHH-----hC--hhh
Confidence 44566789999999999844332221 23332222111 112399999999999765 333322111 00 000
Q ss_pred c-CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. ...+. ...+||+++.++.++++.+.+.+..
T Consensus 149 ~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 149 IRSHHWR----IQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CCSSCEE----EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCCceE----EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 1 11111 1356888899999999999888765
No 22
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.73 E-value=1.3e-17 Score=134.13 Aligned_cols=162 Identities=13% Similarity=0.057 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|..|+|||||+|.|++.... .....|....+..+.. .+..+.+|||||... +....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~ 84 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN----EDMIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMW 84 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC----CSCCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC----CccCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHHH
Confidence 4579999999999999999999976541 1222233333333444 678899999999432 22222
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|+++.-+-.. ..++..+..... ....|+++|+||+|+... ...+++... +. . ...
T Consensus 85 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~-~-~~~ 154 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA--LDEKELIEK-----MN-L-SAI 154 (188)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT-G-GGC
T ss_pred HHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC--CCHHHHHHH-----hC-h-hhh
Confidence 334468999999999984322222 122222222110 112389999999999754 222222211 00 0 000
Q ss_pred -CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 -~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+.+ ..+||+++.++.+|++.+.+.+.
T Consensus 155 ~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 155 QDREICC----YSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp CSSCEEE----EECCTTTCTTHHHHHHHHHHTCC
T ss_pred ccCCeeE----EEEECCCCCCHHHHHHHHHHHHH
Confidence 111111 25688899999999998877553
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.73 E-value=5.4e-17 Score=129.48 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=99.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
+...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||......
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 73 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRT---------- 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSS----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhh----------
Confidence 345899999999999999999999876521 22222333343444444 44 5688999999543221
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+........++ ...+.
T Consensus 74 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~ 140 (181)
T 3tw8_B 74 -ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETED---------AYKFA 140 (181)
T ss_dssp -CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred -hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHHH---------HHHHH
Confidence 12234578899999999984322222 223444444332 23899999999987541011111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ .+|+.++.++.++++.+.+.+.
T Consensus 141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 141 GQMGIQLF------ETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHHTCCEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 33344443 4688889999999998887764
No 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=1.6e-17 Score=150.72 Aligned_cols=177 Identities=18% Similarity=0.198 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~--~~~~~~~~ 95 (352)
...+|+|+|++|+|||||+|.|+|.......... +.|.......+.+ ++..+.+|||||+.+...... +....+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~-gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~- 250 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA-GTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR- 250 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHH-
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCC-CceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHH-
Confidence 4589999999999999999999998753222222 2233333334444 778899999999865332110 1011111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...++..+|++++|+|++++.+..+..++..+... +. ++++|+||+|+........++.... +...+..
T Consensus 251 -~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-~~----~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~ 319 (436)
T 2hjg_A 251 -ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-GK----AVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQF 319 (436)
T ss_dssp -HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----EEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGG
T ss_pred -HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-CC----cEEEEEECccCCCcchHHHHHHHHH-----HHHhccc
Confidence 11233568999999999988888887766665542 32 8999999999986521223333332 3333322
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
..+..+ .++||+++.++.+|++.+.+.+.....
T Consensus 320 ~~~~~~-----~~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 320 LDYAPI-----LFMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp GTTSCE-----EECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCCE-----EEEecccCCCHHHHHHHHHHHHHHhhc
Confidence 222212 257899999999999999888766443
No 25
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.72 E-value=4.5e-17 Score=129.68 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
....+|+|+|.+|+|||||+|.|++..... ....+.........+.... ...+.+|||||..... .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~---- 79 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------A---- 79 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------H----
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-------h----
Confidence 345899999999999999999999876421 1111222222222233311 3467899999954321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 148 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYEE---------AKQFAE 148 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 11223357899999999984332222 23444444443333 3899999999986431011111 233334
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..++ .+|++++.++.++++.+.+.+
T Consensus 149 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 ENGLLFL------EASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HTTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 4343333 467888999999999887765
No 26
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=5.3e-17 Score=130.50 Aligned_cols=159 Identities=20% Similarity=0.183 Sum_probs=94.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++... ......|+... ...+.. ++. .+.+|||||.......
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------- 68 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF----VDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM--------- 68 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC----CCCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT---------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH---------
Confidence 347999999999999999999997764 12222222222 222233 444 3678999996553211
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+..+|++++|++++++-+... ..++..+..... ....|+++|+||+|+... ....+.. ..+.
T Consensus 69 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~--~~~~~~~--------~~~~ 135 (189)
T 4dsu_A 69 --RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR--TVDTKQA--------QDLA 135 (189)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC--SSCHHHH--------HHHH
T ss_pred --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc--ccCHHHH--------HHHH
Confidence 1112235799999999984322222 233344444322 122389999999999754 2222222 2233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ ++||.++.++.++++.+.+.+.
T Consensus 136 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 136 RSYGIPFI------ETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33344443 4678889999999998887764
No 27
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.72 E-value=3e-17 Score=139.56 Aligned_cols=177 Identities=16% Similarity=0.174 Sum_probs=109.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~--~~~~~~~~~~ 96 (352)
..+|+|+|.+|||||||+|.|+|... ..+..+ ++|+......+.+ .+..+.+|||||+.+..... ..+.+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~-g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWA-GVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECT-TSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCC-CeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 47999999999999999999999874 333333 3344444444555 67789999999998755211 1112222222
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
.. ....+|++++|+|++ .+ .....++..+... +. |+++|+||+|.... ..+.. ....+....
T Consensus 80 ~~-~~~~~d~ii~VvD~~-~~-~~~~~~~~~l~~~-~~----p~ivv~NK~Dl~~~--~~~~~--------~~~~l~~~l 141 (274)
T 3i8s_A 80 YI-LSGDADLLINVVDAS-NL-ERNLYLTLQLLEL-GI----PCIVALNMLDIAEK--QNIRI--------EIDALSARL 141 (274)
T ss_dssp HH-HHTCCSEEEEEEEGG-GH-HHHHHHHHHHHHH-TC----CEEEEEECHHHHHH--TTEEE--------CHHHHHHHH
T ss_pred HH-hhcCCCEEEEEecCC-Ch-HHHHHHHHHHHhc-CC----CEEEEEECccchhh--hhHHH--------HHHHHHHhc
Confidence 21 236899999999998 32 2223333444432 32 99999999997643 11110 122233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcC--CCCCchHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG--GQPYTDELKR 222 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~--~~~~~~~~~~ 222 (352)
+..++ ++||.++.|+.+|++.+.+.+.... ...|..++..
T Consensus 142 g~~~i------~~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~ 183 (274)
T 3i8s_A 142 GCPVI------PLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLN 183 (274)
T ss_dssp TSCEE------ECCCGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHH
T ss_pred CCCEE------EEEcCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHH
Confidence 43333 5788899999999999888765432 1235555533
No 28
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.72 E-value=2.1e-16 Score=129.76 Aligned_cols=166 Identities=19% Similarity=0.127 Sum_probs=91.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++.... .....|.... ...+.+ ++. .+.+|||||.... .
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~ 96 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP----ESYTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDY-----------D 96 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-----------CCCCCEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC----CCCCCccceeEEEEEEE-CCEEEEEEEEECCCchhh-----------h
Confidence 4579999999999999999999976541 1111122111 122233 333 6789999995432 1
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc-----cCCh
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-----ECPK 167 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~-----~~~~ 167 (352)
......+.++|++++|+|++++.+-... .++..+..... . .|+++|+||+|+... ....+.+.. ....
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 171 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYH 171 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc--chhhhhhcccccCcccHH
Confidence 2223345689999999999843322222 24444544332 2 289999999999865 333322210 0001
Q ss_pred hHHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+....+. .++ .+||+++.++.++++.+.+.+..
T Consensus 172 ~~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 172 RGQEMARSVGAVAYL------ECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHHHHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 12334444444 333 56888899999999998887654
No 29
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=5.3e-17 Score=147.49 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|||++|+|||||+|.|+|........ ..++|.......+.+ ++..+.+|||||+.... ...+...+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~-~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecC-CCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 479999999999999999999876421212 223455555555566 78889999999987531 11112334444455
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
++.++|++++|+|++.+++..+.....++... +. |+++|+||+|.... . .... ..++. ..+.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~~----p~ilv~NK~D~~~~--~--~~~~-------~~~~~-~lg~- 139 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-TV----DTILVANKAENLRE--F--EREV-------KPELY-SLGF- 139 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-TC----CEEEEEESCCSHHH--H--HHHT-------HHHHG-GGSS-
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEeCCCCccc--c--HHHH-------HHHHH-hcCC-
Confidence 66799999999999878888777666666542 32 89999999997521 1 1111 01121 1121
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....++||.++.++.+|++.+...+..
T Consensus 140 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 140 ----GEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----CCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 123367999999999999999887764
No 30
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.72 E-value=3.8e-17 Score=132.09 Aligned_cols=161 Identities=12% Similarity=0.089 Sum_probs=99.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++... ......|....+......++. .+.+|||||.... ..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 86 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI----PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY-----------DR 86 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------TT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC----CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH-----------HH
Confidence 447999999999999999999998764 222222332222222222443 4589999994332 12
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcc-hhcHHHHhcccCChhHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~-~~~l~~~l~~~~~~~~~~~ 172 (352)
.....+.++|++++|+|++++-+-.+ ..++..+..... . .|+++|+||+|+.... .....+. ...+
T Consensus 87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~~~~~~~~~--------~~~~ 155 (194)
T 3reg_A 87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRKDGSDDVTKQE--------GDDL 155 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCCTTTTCCCHHH--------HHHH
T ss_pred HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccCCCCcccHHH--------HHHH
Confidence 23345678999999999984433333 234445554332 2 2999999999987430 0111111 2223
Q ss_pred HHhcCCc-EEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 173 LQLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 173 ~~~~~~~-~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+.. ++ .+||+++.++.++++.+.+.+..
T Consensus 156 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 156 CQKLGCVAYI------EASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHTCSCEE------ECBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHhcCCCEEE------EeecCCCCCHHHHHHHHHHHHHh
Confidence 3333433 33 46888999999999998887654
No 31
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.72 E-value=3.9e-17 Score=128.16 Aligned_cols=159 Identities=12% Similarity=0.044 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|.+|+|||||+|.+++...... ..|.......+.. .+..+.+|||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence 4799999999999999999987654211 1132222333344 678899999999643 1112223
Q ss_pred ccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC-
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD- 177 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 177 (352)
.+.++|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+... ...++.... +. .....
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~~~ 133 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDK-----LG--LHSLRH 133 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGCSS
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCeEEEEEECcCCcCC--CCHHHHHHH-----hC--cccccC
Confidence 4578999999999984422222 122222221110 112399999999999754 333322211 00 00011
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+. ...+||+++.++.++++.+.+.+.
T Consensus 134 ~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 134 RNWY----IQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp CCEE----EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ccEE----EEEcccCCCcCHHHHHHHHHHHHh
Confidence 1111 235788899999999998877653
No 32
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=1.4e-16 Score=130.82 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=72.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||++.|++... ..... ++......+.+.. +..+.+|||||... +..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY----RDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHES-----------LRF 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC----CCBCC-CCSCEEEEEECSSTTCCEEEEEECCCCHH-----------HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----ccccC-CcceeeEEEEecCCCccEEEEEECCCChh-----------HHH
Confidence 347999999999999999999997664 11111 2222233344422 56789999999532 222
Q ss_pred -HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhc----ccccceEEEEEeCCCCCCc
Q 018636 96 -CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 96 -~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~ilv~nk~D~~~~ 152 (352)
.....+.++|++++|+|++ .+.........++...+. .....|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 70 QLLDRFKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2222356899999999998 332222233333322211 1112399999999999865
No 33
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.71 E-value=4.5e-16 Score=148.34 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=78.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc-eeeE--------e----------------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-KTCE--------M---------------------------- 60 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t-~~~~--------~---------------------------- 60 (352)
...+|+|+|.+|+|||||+|+|+|....+.+..+++.. +... .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 45899999999999999999999987655443333210 0000 0
Q ss_pred ---------------EEEEeeC---CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHH
Q 018636 61 ---------------KTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122 (352)
Q Consensus 61 ---------------~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 122 (352)
..+.++. ...+.||||||+.+... .......++..+|++++|+|++..++..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 0000100 04689999999765321 112223334578999999999877888777
Q ss_pred HHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..+.......+. |+++|+||+|....
T Consensus 220 ~~l~~~l~~~~~----~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 220 RYLENYIKGRGL----TVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHTTTSCC----CEEEEEECGGGGGG
T ss_pred HHHHHHHHhhCC----CEEEEEECcccccc
Confidence 655422221232 89999999998643
No 34
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.71 E-value=9.9e-17 Score=129.38 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=95.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||.... ..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------~~--- 90 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE--ACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------NS--- 90 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------HH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc--CCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------HH---
Confidence 455799999999999999999999876421 11122233333333444 33 46789999995431 11
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+..+|++++|+|+++..+..+ ..++..+....... .|+++|+||+|+........++ ...+.
T Consensus 91 -~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~~~---------~~~~~ 158 (192)
T 2il1_A 91 -ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITRQQ---------GEKFA 158 (192)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred -HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHH
Confidence 11222346899999999984333322 23344444443322 3899999999986431011111 22233
Q ss_pred Hhc-CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
... +..++ .+||+++.++.++++.+.+.+.
T Consensus 159 ~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 159 QQITGMRFC------EASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HTSTTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HhcCCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 332 22222 5688889999999999877654
No 35
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.71 E-value=1.2e-16 Score=126.09 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=96.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||.... ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~ 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDK--HITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERF-----------HA 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSS--CCCCCSCEEEEEEEES-SSCEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhh-----------hh
Confidence 347999999999999999999997754111 1111222222223333 33 36788999995431 22
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|+++..+-.. ..++..+........ |+++|+||+|+........++ ...+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 139 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI--CLCIVGNKIDLEKERHVSIQE---------AESYAE 139 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--eEEEEEECcccccccccCHHH---------HHHHHH
Confidence 23345678999999999984332222 234444544443333 899999999987531111111 233444
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||.++.++.++++.+.+.+.
T Consensus 140 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 140 SVGAKHY------HTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HTTCEEE------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEE------EecCCCCCCHHHHHHHHHHHHh
Confidence 4444443 4688889999999999877653
No 36
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.71 E-value=6.2e-16 Score=130.13 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=102.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|.+|||||||+|.|+|..... +..+ ++|.......+.. .+..+.+|||||......... .+.+.....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~-~~~p-g~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYV-ANWP-GVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEE-EECT-TSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc-cCCC-CceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHH
Confidence 4799999999999999999999976532 2222 3444444444444 578899999999987543321 122222221
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
. ...+|++++|+|++ .+.. ...++..+.. .+ .|+++++||+|.... ..+. . ....+....+.
T Consensus 80 ~-~~~~d~ii~V~D~t-~~~~-~~~~~~~l~~-~~----~pvilv~NK~Dl~~~--~~i~---~-----~~~~l~~~lg~ 141 (258)
T 3a1s_A 80 L-KGDADLVILVADSV-NPEQ-SLYLLLEILE-ME----KKVILAMTAIDEAKK--TGMK---I-----DRYELQKHLGI 141 (258)
T ss_dssp H-HSCCSEEEEEEETT-SCHH-HHHHHHHHHT-TT----CCEEEEEECHHHHHH--TTCC---B-----CHHHHHHHHCS
T ss_pred h-hcCCCEEEEEeCCC-chhh-HHHHHHHHHh-cC----CCEEEEEECcCCCCc--cchH---H-----HHHHHHHHcCC
Confidence 1 15789999999998 4422 2223333332 12 299999999997533 1111 0 13334444444
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.++ ++||.++.++.+|++.+.+...
T Consensus 142 ~vi------~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 PVV------FTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEE------EEEeeCCcCHHHHHHHHHHHhh
Confidence 333 5788889999999999988775
No 37
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.71 E-value=1.8e-16 Score=128.19 Aligned_cols=162 Identities=20% Similarity=0.181 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||......
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 80 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT----------- 80 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh-----------
Confidence 44799999999999999999999765421 11222333343444444 44 4688999999543211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+-. ...++..+........ |+++|+||+|+........++ ...+..
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 149 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV--NKLLVGNKCDLTTKKVVDYTT---------AKEFAD 149 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECcccccccccCHHH---------HHHHHH
Confidence 1122336789999999998432211 2334444544433333 899999999987541111111 223334
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+|+.++.++.++++.+.+.+..
T Consensus 150 ~~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 150 SLGIPFL------ETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp HTTCCEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCcEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 4444444 46788899999999998887654
No 38
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=131.77 Aligned_cols=163 Identities=14% Similarity=0.040 Sum_probs=98.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.|++...+... ...|.......+.+ ++..+.+|||||..... ..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~ 83 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR-----------NL 83 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 34589999999999999999999987632221 22333344444445 57899999999965421 12
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH-
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL- 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~- 173 (352)
....+.++|++++|+|++++.+-.. ..++..+...... ....|+++|+||+|+... ...++... .+
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~---------~~~ 152 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQ---------LLC 152 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHH---------HHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHH---------HhC
Confidence 2334568899999999984322111 1233333322110 012389999999999755 33332211 11
Q ss_pred -HhcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 -QLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 -~~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.... ..+. ...+||+++.++.+|++.+.+.+.
T Consensus 153 ~~~~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 LENIKDKPWH----ICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp GGGCCSSCEE----EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred hhhccCCceE----EEEccCCCCcCHHHHHHHHHHHHH
Confidence 1111 1111 125688889999999999877653
No 39
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=129.76 Aligned_cols=182 Identities=17% Similarity=0.115 Sum_probs=95.6
Q ss_pred CCCCCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCCc--eEEEEeCC
Q 018636 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTP 77 (352)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~lvDtp 77 (352)
||..................+|+|+|..|+|||||+|.+++... . .....|+...+. .+.+ ++. .+.+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~ 76 (201)
T 2q3h_A 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-P---TEYIPTAFDNFSAVVSV-DGRPVRLQLCDTA 76 (201)
T ss_dssp ------------------CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEE-TTEEEEEEEEECC
T ss_pred CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCC-C---CCCCCcccceeEEEEEE-CCEEEEEEEEECC
Confidence 33333333333333445668999999999999999999998763 2 111222222222 2233 444 56699999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchh
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK 155 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~ 155 (352)
|....... ....+.++|++++|+|++++.+..+. .++..+..... . .|+++|+||+|+... .
T Consensus 77 G~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~ 140 (201)
T 2q3h_A 77 GQDEFDKL-----------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-K--APIILVGTQSDLRED--V 140 (201)
T ss_dssp CSTTCSSS-----------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--SCEEEEEECGGGGGC--H
T ss_pred CCHHHHHH-----------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhc--h
Confidence 97653211 22345789999999999843333332 34444554433 2 389999999998753 2
Q ss_pred cHHHHhc----ccC-ChhHHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 156 TLEDFLG----HEC-PKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 156 ~l~~~l~----~~~-~~~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.....+. ... ......+....+. .++ .+||+++.++.++++.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYI------ECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHhcCCcEEE------EEecCCCCCHHHHHHHHHHHHh
Confidence 1111110 000 0112233333333 332 5688889999999998877653
No 40
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=6.2e-17 Score=132.78 Aligned_cols=161 Identities=15% Similarity=0.159 Sum_probs=97.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++..... ....+++.......+.+ ++ ..+.+|||||.......
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~--------- 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI--------- 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC--SSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH---------
Confidence 445899999999999999999999765411 11122233333333444 44 46899999996442211
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+... ....+. ...+.
T Consensus 86 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 151 (213)
T 3cph_A 86 --TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALA 151 (213)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSSC--CSCHHH--------HHHHH
T ss_pred --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--ccCHHH--------HHHHH
Confidence 1223368899999999883322221 23445555443322 289999999998533 221111 12223
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ .+|+.++.++.++++.+.+.+.
T Consensus 152 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 152 KELGIPFI------ESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHHTCCEE------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33333333 4678888999999998877654
No 41
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.6e-16 Score=127.52 Aligned_cols=160 Identities=15% Similarity=0.073 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++.......++ .......+.+ ++..+.+|||||..... ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-----~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~ 77 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-----IGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SSW 77 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-----SCSSCEEEEE-TTEEEEEEECCC----C-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCC-----CccceEEEEE-CCEEEEEEECCCCHhHH-----------HHH
Confidence 458999999999999999999997654322222 2222233344 67889999999975422 111
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh-
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL- 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~- 175 (352)
...+.++|++++|+|++++-+-... .++..+..... ....|+++|+||+|+... ...++... .+..
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~---------~~~~~ 145 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQ---------FLKLT 145 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHH---------HHTGG
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHH---------HhChh
Confidence 2234689999999999854333222 23333322210 112399999999999754 22222111 1111
Q ss_pred -cC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 -CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 -~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. ..+. ...+||+++.++.++++.+.+.+..
T Consensus 146 ~~~~~~~~----~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 146 SIKDHQWH----IQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp GCCSSCEE----EEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred hhcCCCcE----EEEccCCCCcCHHHHHHHHHHHHHH
Confidence 11 1111 1256888999999999999887644
No 42
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.71 E-value=1.1e-15 Score=121.86 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=97.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++... ......|....+......++ ..+.+|||||.......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------- 70 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF----VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF---------- 70 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC----CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC----CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH----------
Confidence 358999999999999999999996553 11222232222222222244 45689999997653211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|++++-+-.. ..++..+...+.. ...|+++|+||+|+........++ ...+..
T Consensus 71 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 139 (181)
T 3t5g_A 71 -PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYEE---------GKALAE 139 (181)
T ss_dssp -CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHHH---------HHHHHH
Confidence 1234568899999999983222222 2233333333221 123899999999986441111111 223444
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+||.++.++.++++.+.+.+..
T Consensus 140 ~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 140 SWNAAFL------ESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp HTTCEEE------ECCTTSHHHHHHHHHHHHHHHHT
T ss_pred HhCCcEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 4444443 46888999999999999887755
No 43
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.71 E-value=4.9e-17 Score=132.48 Aligned_cols=165 Identities=18% Similarity=0.091 Sum_probs=96.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCCce--EEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|.+|+|||||++.+++... ......|+..... .+.+ ++.. +.+|||||....
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~----------- 91 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY----------- 91 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC----CC-CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGG-----------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC----CCCcCCeecceeEEEEEE-CCEEEEEEEEECCCchhh-----------
Confidence 4568999999999999999999986544 1111222222222 2223 4444 459999996432
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc----C-C
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-P 166 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~----~-~ 166 (352)
.......+.++|++++|+|++++.+..+. .++..+..... . .|+++|+||+|+... ....+.+... . .
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~ 166 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY 166 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCH
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhccc--hhhhhhhhccccccccH
Confidence 12233456789999999999843333332 34444544432 2 389999999998765 3222221110 0 0
Q ss_pred hhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.....+....+...+ ..+||+++.++.++++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~-----~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 167 PQGLAMAKEIGAVKY-----LECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHHTTCSEE-----EECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcEE-----EEeeCCCCCCHHHHHHHHHHH
Confidence 112233344343322 257888999999999988654
No 44
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.71 E-value=3.5e-16 Score=125.89 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=93.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++..... ....|..... ..+.+ ++ ..+.+|||||.... .
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~ 83 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD----EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------S 83 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS----CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC----------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc----ccCCccceEEEEEEEE-CCEEEEEEEEECCChHHH-----------H
Confidence 34799999999999999999999775411 1111222212 22233 43 34789999995431 1
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
......+..+|++++|+++++..+..+ ..++..+..... ....|+++|+||+|+... ....+. ...+.
T Consensus 84 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~ 152 (190)
T 3con_A 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTR--TVDTKQ--------AHELA 152 (190)
T ss_dssp ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC--CSCHHH--------HHHHH
T ss_pred HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcc--cCCHHH--------HHHHH
Confidence 222344568999999999984333222 233444444332 112389999999998753 211111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+..++ .+|+.++.++.++++.+.+.+..
T Consensus 153 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 153 KSYGIPFI------ETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 33333333 46788889999999998877654
No 45
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.70 E-value=3.2e-16 Score=124.51 Aligned_cols=162 Identities=17% Similarity=0.065 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||... +..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence 45799999999999999999999765411 11111222222233333 44 3788999999433 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.....+..+|++++|+++++..+... ..++..+...... ....|+++|+||+|+... ....+. ...+
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~ 141 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEE--------AQAW 141 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHH--------HHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc--ccCHHH--------HHHH
Confidence 33445678999999999983322222 2344444443321 012389999999998743 211111 2223
Q ss_pred HH-hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~-~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.. ..+..++ .+|+.++.++.++++.+.+.+.
T Consensus 142 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 142 CRDNGDYPYF------ETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHTTCCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33 2222333 5688889999999998877664
No 46
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.70 E-value=6.8e-17 Score=127.49 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=96.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||.......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~----------- 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI----------- 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-----------
Confidence 4799999999999999999999776411 11111222233333333 33 36789999996443211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+... ....+. ...+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALAKE 136 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTC--CSCHHH--------HHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCcC--ccCHHH--------HHHHHHH
Confidence 1123357899999999984322222 23444555443322 399999999998543 211111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ .+|+.++.++.++++.+.+.+..
T Consensus 137 ~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 LGIPFI------ESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HTCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 343333 46888899999999998887654
No 47
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.70 E-value=1.6e-16 Score=126.76 Aligned_cols=161 Identities=22% Similarity=0.199 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+.. ...+.+|||||..... ..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~ 77 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEF--QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-----------SL 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTT--SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-----------GG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCc--CCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-----------hh
Confidence 347999999999999999999998764221 111122222222233311 3478899999954311 11
Q ss_pred HhcccCCccEEEEEEecCCCCC-HHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++.+ .....++..+....... .|+++|+||+|+........++ ...+...
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~~---------~~~~~~~ 146 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAED---------AQTYAQE 146 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHHH
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHHH---------HHHHHHH
Confidence 2223467899999999984333 22234445554443222 3899999999987541111111 2233333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..++ .+|++++.++.++++.+.+.+
T Consensus 147 ~~~~~~------~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 147 NGLFFM------ETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp TTCEEE------ECCSSSCTTHHHHHHHHHHTC
T ss_pred cCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 343333 467888999999999887765
No 48
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.70 E-value=4.7e-16 Score=124.68 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=98.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||... +..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 74 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD--DSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FRS 74 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 45899999999999999999999775411 11122222333333334 44 4778999999533 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+.........+ ...+..
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 143 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTFLE---------ASRFAQ 143 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 33445678999999999984322221 23444444433332 3999999999986431011111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|+.++.++.++++.+.+.+.
T Consensus 144 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 144 ENELMFL------ETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HTTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEE------EecCCCCCCHHHHHHHHHHHHH
Confidence 3343333 4678889999999998877653
No 49
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.70 E-value=8.3e-16 Score=130.75 Aligned_cols=166 Identities=19% Similarity=0.193 Sum_probs=104.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|||||||+|.|+|... ..+..+ ++|.......+.+ .+..+.+|||||+.+....... ..+... .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~-~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~-~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWP-GVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARN-F 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECT-TSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHH-H
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCC-CeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHH-h
Confidence 37999999999999999999999865 332322 2344444444555 6778999999999875433321 112111 1
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
....++|++++|+|++ .+ .....++..+... +. .|+++++||+|+... .... .....+....+.
T Consensus 77 ~~~~~~d~vi~v~D~~-~~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~~~--~~~~--------~~~~~l~~~lg~ 140 (271)
T 3k53_A 77 ILDGNADVIVDIVDST-CL-MRNLFLTLELFEM-EV---KNIILVLNKFDLLKK--KGAK--------IDIKKMRKELGV 140 (271)
T ss_dssp HHTTCCSEEEEEEEGG-GH-HHHHHHHHHHHHT-TC---CSEEEEEECHHHHHH--HTCC--------CCHHHHHHHHSS
T ss_pred hhccCCcEEEEEecCC-cc-hhhHHHHHHHHhc-CC---CCEEEEEEChhcCcc--cccH--------HHHHHHHHHcCC
Confidence 1235799999999998 32 1222222223222 21 289999999997533 1111 012333333344
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHhcC
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~ 212 (352)
.++ ++|+.++.++.++++.+...+....
T Consensus 141 ~~~------~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 141 PVI------PTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp CEE------ECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred cEE------EEEeCCCCCHHHHHHHHHHHHhccc
Confidence 433 6788899999999999999886543
No 50
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.70 E-value=6.5e-16 Score=124.21 Aligned_cols=163 Identities=17% Similarity=0.107 Sum_probs=98.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
+...+|+|+|.+|+|||||+|.|++...... ...+.+.......+... ....+.+|||||......
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------- 86 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT----------- 86 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-----------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC--cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-----------
Confidence 3457999999999999999999997764211 11112222222223331 134778999999655321
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+........+ . ...+..
T Consensus 87 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 155 (189)
T 2gf9_A 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAE-D--------GRRLAD 155 (189)
T ss_dssp SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH-H--------HHHHHH
T ss_pred hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHH-H--------HHHHHH
Confidence 12334568999999999974322222 23444444433222 399999999998753101111 1 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|++++.++.+|++.+.+.+.
T Consensus 156 ~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 156 DLGFEFF------EASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 3343333 4688889999999999877664
No 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5.5e-16 Score=123.51 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=96.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++....... ...+.+.......+.. ++ ..+.+|||||.... ..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~ 75 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------RS 75 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HH
Confidence 3489999999999999999999977642111 1111222222222233 44 36789999995431 22
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 144 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED---------GEKLAK 144 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH---------HHHHHH
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 23345568899999999984332222 23445555443322 3999999999997541111111 122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+||.++.++.++++.+.+.+..
T Consensus 145 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 145 EYGLPFM------ETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHTCCEE------ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3333333 46888899999999998877643
No 52
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=1.9e-16 Score=143.77 Aligned_cols=179 Identities=18% Similarity=0.200 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH-HH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~-~~ 96 (352)
...+|+|+|++|||||||+|.|+|.......+.++ .|.......+.+ ++..+.+|||||+........+..+.+. ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~g-tT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG-TTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCC-CcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 34899999999999999999999986422222222 233333334445 7888999999998432111000000000 00
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...++..+|++++|+|++...+..+......+.. .+. ++++|+||||+........+++... +...+...
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~~----~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 326 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RGR----ASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYFI 326 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTC----EEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECccCCCchhhHHHHHHHH-----HHHHhccC
Confidence 0112346799999999987777766555554443 343 8999999999876421223333222 22222222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
....+ ..+||+++.++.+|++.+.+.+.....
T Consensus 327 ~~~~~-----~~~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 327 DYSPL-----IFTSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp TTSCE-----EECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred CCCcE-----EEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 22212 257899999999999999988766443
No 53
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.70 E-value=6.5e-17 Score=127.59 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..+|+|+|.+|+|||||+|.|++...... ...+.........+.+.. +..+.+|||||.... ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~~ 72 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEF--QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSLA 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh-----------hhhh
Confidence 47999999999999999999997654211 111222222222233311 456789999995431 1112
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|++++.+-.. ..++..+........ |+++|.||+|+........++ ...+....
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 141 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLANKRAVDFQE---------AQSYADDN 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHHH---------HHHHHHHT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccCccccccCHHH---------HHHHHHHc
Confidence 223468899999999984322222 233444444333333 889999999986431011111 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..++ .+||+++.++.+|++.|.+.+
T Consensus 142 ~~~~~------~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 142 SLLFM------ETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHTS
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 43333 468888999999999887654
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.70 E-value=2.2e-16 Score=128.71 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=95.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC-----------------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------------------- 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------- 68 (352)
...+|+|+|..|+|||||+|.|++..... ....+.........+.+ ++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE--NTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSCEEEEEEEET-TC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC--CcCccccceeEEEEEEe-cCccccccccccccccccccccccccccccc
Confidence 35899999999999999999999876421 11111111222222222 22
Q ss_pred ----------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhccccc
Q 018636 69 ----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVF 137 (352)
Q Consensus 69 ----------~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 137 (352)
..+.+|||||...... .....+..+|++++|+|++++.+..+ ..++..+....+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---- 147 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---- 147 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred cccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence 5789999999544221 11223357899999999984333222 234444444333
Q ss_pred ceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 138 ~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.|+++|+||+|.... ....++ ...++...+..++ ++||+++.++.++++.+.+.+.
T Consensus 148 ~piilv~NK~D~~~~-~~~~~~---------~~~~~~~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 148 YIIILVANKIDKNKF-QVDILE---------VQKYAQDNNLLFI------QTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CEEEEEEECTTCC-C-CSCHHH---------HHHHHHHTTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCcccc-cCCHHH---------HHHHHHHcCCcEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 399999999993222 112222 2334444444333 4678889999999999877664
No 55
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.70 E-value=3.8e-16 Score=122.84 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=93.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++... ......|..... ..+.+ ++ ..+.+|||||.... ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-------~~--- 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF----VEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-------AA--- 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC----CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---C-------HH---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc----CCCCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchh-------HH---
Confidence 348999999999999999999997764 111112222211 22233 33 36789999995432 11
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....+..+|++++|+|+++..+-.. ..++..+..... ....|+++|+||+|+........++ ...+.
T Consensus 68 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 136 (168)
T 1u8z_A 68 -IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 136 (168)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccCHHH---------HHHHH
Confidence 11222346899999999983322221 233444444332 1123999999999987531111221 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ .+|+.++.++.++++.+.+.+.
T Consensus 137 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 137 DQWNVNYV------ETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeCCCCCCCHHHHHHHHHHHHH
Confidence 33343333 4678888999999999877653
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=3.3e-16 Score=123.05 Aligned_cols=160 Identities=19% Similarity=0.172 Sum_probs=93.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-eEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||+|.+++..... ....+.. .....+.+ ++ ..+.++||||.... ..+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~--------~~~~- 68 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE----KYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF--------ASMR- 68 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS----CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHHH-
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc----cCCCCcceeEEEEEEE-CCEEEEEEEEECCCchhh--------HHHH-
Confidence 4799999999999999999998765411 1111221 11222333 33 34789999996542 1111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+..+|++++|+++++..+... ..++..+..... ....|+++|+||+|+........+ . ...+..
T Consensus 69 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 136 (167)
T 1kao_A 69 --DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSS-E--------GRALAE 136 (167)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHH-H--------HHHHHH
T ss_pred --HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHH-H--------HHHHHH
Confidence 112346799999999983322221 233333433322 112399999999998643101111 1 122333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+|+.++.++.++++.+.+.+..
T Consensus 137 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 137 EWGCPFM------ETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHTSCEE------EECTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCEE------EecCCCCcCHHHHHHHHHHHHhh
Confidence 3333333 46888999999999998876643
No 57
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.70 E-value=2.7e-16 Score=127.98 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=97.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..+|+|+|..|+|||||+|.|++...... ...+.........+.... ...+.+|||||... +....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER-----------YRTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSC--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCccceeEEEEEEEECCeEEEEEEEECCCchh-----------hcchH
Confidence 47999999999999999999998764211 111122222222333311 34778999999643 12223
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|+........+ . ...+....
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 143 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSE-R--------GRQLADHL 143 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHH-H--------HHHHHHHH
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHH-H--------HHHHHHHC
Confidence 445568899999999984322221 23444444432222 399999999998754101111 1 22233333
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+..++ .+||+++.++.++++.+.+.+.
T Consensus 144 ~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 144 GFEFF------EASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp TCEEE------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred CCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 43333 4688888999999998877653
No 58
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.70 E-value=3.9e-16 Score=127.35 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=99.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----------- 72 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN--DYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT----------- 72 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT--TCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH-----------
Confidence 34799999999999999999999876421 11122222333333444 43 3688999999654321
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 141 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYDV---------AKEFAD 141 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHHH
Confidence 12234578899999999984333222 23444444433322 3899999999997541011111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+||.++.++.++++.+.+.+..
T Consensus 142 ~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 142 ANKMPFL------ETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp HTTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3343333 46788899999999988877643
No 59
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.70 E-value=1e-16 Score=126.53 Aligned_cols=160 Identities=19% Similarity=0.138 Sum_probs=96.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
..+|+|+|.+|+|||||+|.|++...... ...+...........+. ....+.+|||||..... ...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~ 72 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN--INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-----------ALA 72 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh-----------ccc
Confidence 47999999999999999999998764211 11111122222223331 13567899999974321 111
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|++++.+... ..++..+....... .|+++|.||+|+.... ....+. ...+....
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~-~v~~~~--------~~~~~~~~ 141 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVR-EVMERD--------AKDYADSI 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGC-CSCHHH--------HHHHHHHT
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCcccccc-ccCHHH--------HHHHHHHc
Confidence 223467899999999984333222 23445555432322 3899999999987531 111111 22233343
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+..++ .+|++++.++.+|++.+.+.+
T Consensus 142 ~~~~~------~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 142 HAIFV------ETSAKNAININELFIEISRRI 167 (170)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHC
T ss_pred CCEEE------EEeCCCCcCHHHHHHHHHHHH
Confidence 43333 467888999999999887654
No 60
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.70 E-value=7.3e-17 Score=128.89 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=96.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||++.|++.......++ .......+.+ ++..+.+|||||.... ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t-----~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPT-----QGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEE-----TTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCc-----CCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence 3458999999999999999999998753222122 2222333444 5788999999995431 112
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...++.++|++++|+|++++-+-... .++..+..... ....|+++|.||+|+... ...++.... +. +..
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~--~~~ 146 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEG-----LN--LHT 146 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--GGG
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC--CCHHHHHHH-----hC--chh
Confidence 23344689999999999844332221 22222222111 112389999999999765 333222111 00 000
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.....+ ...++||.++.++.++++.+.+.+
T Consensus 147 ~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 147 IRDRVW---QIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp CCSSCE---EEEECCTTTCTTHHHHHHHHHHTC
T ss_pred ccCCce---EEEEccCCCCCCHHHHHHHHHHHH
Confidence 111111 113568899999999999887654
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.70 E-value=4.5e-16 Score=122.33 Aligned_cols=160 Identities=21% Similarity=0.128 Sum_probs=85.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||+|.|+|.......+..+ ++.. ....+ + ...+.++||||.... ...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~--~~~~~-~~~~~~~~i~D~~g~~~~-----------~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG--HTYD--RSIVV-DGEEASLMVYDIWEQDGG-----------RWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEE--EEEEE-TTEEEEEEEEECC-------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccc--cceE--EEEEE-CCEEEEEEEEECCCCccc-----------hhh
Confidence 3799999999999999999999876422222111 1111 11222 3 345689999995542 112
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+........++ ...+...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 135 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDE---------GRACAVV 135 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHH---------HHHHHHH
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHH---------HHHHHHH
Confidence 2234468899999999984322222 223333333211 1123899999999987541111111 1223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ .+||+++.++.++++.+.+.+..
T Consensus 136 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 136 FDCKFI------ETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TTCEEE------ECBGGGTBSHHHHHHHHHHHHHH
T ss_pred hCCcEE------EeccCCCCCHHHHHHHHHHHHHh
Confidence 343333 56888999999999998877643
No 62
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.69 E-value=3e-16 Score=126.21 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=99.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++.......+ |.......+.+ ++..+.+|||||....... .
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~-----------~ 83 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRPY-----------W 83 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------C
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------H
Confidence 45899999999999999999998765422222 22222333444 6788999999997653211 2
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++-+-... .++..+..... ....|+++|+||+|+... ...++.... +. ....
T Consensus 84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~ 153 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLPDA--ASEAEIAEQ-----LG--VSSI 153 (189)
T ss_dssp SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGC
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCcCC--CCHHHHHHH-----hC--hhhc
Confidence 2345689999999999844333222 22222222110 012399999999999765 333322211 00 0011
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
....+ ...++||.++.++.++++.+.+.+...
T Consensus 154 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 154 MNRTW---TIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CSSCE---EEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred cCCce---EEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 11111 123568888999999999998877653
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.69 E-value=2.5e-16 Score=125.68 Aligned_cols=166 Identities=17% Similarity=0.102 Sum_probs=92.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+. ....+.+|||||... +.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~ 72 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ--QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQ 72 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT--TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hh
Confidence 345899999999999999999999765411 111112222223333332 134788999999433 22
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
......+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+.........+. ...
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~--------~~~ 144 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS--------AQE 144 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH--------HHH
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH--------HHH
Confidence 233445678999999999984322222 2334444433320 11238999999999864311111111 222
Q ss_pred HHH-hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 172 ILQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+.. ..+..++ .+|+.++.++.++++.+.+.+.
T Consensus 145 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 145 LAKSLGDIPLF------LTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp HHHHTTSCCEE------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCCeEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 333 1222333 4678889999999998877653
No 64
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.69 E-value=1.3e-15 Score=123.83 Aligned_cols=165 Identities=20% Similarity=0.198 Sum_probs=96.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEe-eCCceEEEEeCCCCCCCCCCcHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVL-KDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
+.....+|+|+|.+|+|||||+|.|++.... .....|....+.. ... .....+.+|||||.......
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------- 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFS----EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL------- 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCC----SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH-------
Confidence 4445689999999999999999999987652 2222222222221 122 13456789999997653221
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
....+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+.........+ ...
T Consensus 89 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~~~ 154 (201)
T 3oes_A 89 ----PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAVE---------GKK 154 (201)
T ss_dssp ----CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHH---------HHH
T ss_pred ----HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHHH---------HHH
Confidence 2234568999999999983322222 123333322211 1123899999999987441011111 222
Q ss_pred HHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....+..++ .+||+++.++.++++.+.+.+..
T Consensus 155 ~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 155 LAESWGATFM------ESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHTCEEE------ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 3333344433 46888999999999998887754
No 65
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.69 E-value=1.3e-16 Score=128.73 Aligned_cols=162 Identities=12% Similarity=0.078 Sum_probs=92.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.|++.......+ |.......+.. .+..+.+|||||...... .
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY-KNICFTVWDVGGQDKIRP-----------L 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE-----ETTEEEEEEEE-TTEEEEEEECC-----CT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCC-----cCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 456899999999999999999998765422111 22222333344 678899999999754221 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++-+-... .++..+..... ....|+++|+||+|+... ...+++... +. ...
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~ 159 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMPNA--MPVSELTDK-----LG--LQH 159 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCCCC--CCHHHHHHH-----hC--ccc
Confidence 11223578999999999844332221 22222221110 012399999999999754 333322221 00 000
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.....+. ...+||.++.++.++++.+.+.+
T Consensus 160 ~~~~~~~---~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 160 LRSRTWY---VQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp CSSCCEE---EEECBTTTTBTHHHHHHHHHHHT
T ss_pred ccCCceE---EEECcCCCcCCHHHHHHHHHHHH
Confidence 1111111 13578889999999999887654
No 66
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=2.7e-16 Score=123.61 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=94.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|+|||||+|.|+|...... ..+ +.|.......+.+ ++..+.+|||||......... .+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~-~~~-~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIG-NWP-GVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSH--HHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeecc-CCC-CcceeeeEEEEEE-CCcEEEEEECCCcccCCCcch--hHHHHHHHH
Confidence 37899999999999999999998754221 111 2233333333444 677899999999876432211 122222111
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
. ..++|++++|+|++ .+. ....++..+.. .+ .|+++|+||+|+... ..+. . ....+....+.
T Consensus 78 ~-~~~~~~~i~v~D~~-~~~-~~~~~~~~~~~-~~----~p~ilv~nK~Dl~~~--~~~~----~----~~~~~~~~~~~ 139 (165)
T 2wji_A 78 I-NEKPDLVVNIVDAT-ALE-RNLYLTLQLME-MG----ANLLLALNKMDLAKS--LGIE----I----DVDKLEKILGV 139 (165)
T ss_dssp H-HHCCSEEEEEEETT-CHH-HHHHHHHHHHH-TT----CCEEEEEECHHHHHH--TTCC----C----CHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCC-chh-HhHHHHHHHHh-cC----CCEEEEEEchHhccc--cChh----h----HHHHHHHHhCC
Confidence 1 13689999999987 321 12223333332 12 289999999997532 1110 0 12223333343
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.++ ++||+++.++.++++.+.+.+
T Consensus 140 ~~~------~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KVV------PLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CEE------ECBGGGTBSHHHHHHHHHHHT
T ss_pred CEE------EEEcCCCCCHHHHHHHHHHHh
Confidence 333 578999999999999887654
No 67
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.69 E-value=1.9e-16 Score=126.64 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=76.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC--cceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--VTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~--~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
...+|+|+|.+|+|||||+|.|++... ..... ++.......+.+ ++ ..+.+|||||... +
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~ 70 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF----NSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------F 70 (183)
T ss_dssp EEEEEEEECCCCC--------------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------h
Confidence 348999999999999999999987653 11111 122222333334 44 5788999999543 2
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.......+.++|++++|+|++++.+-.. ..++..+....... .|+++|+||+|+........++ ...+
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~ 139 (183)
T 2fu5_C 71 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKER---------GEKL 139 (183)
T ss_dssp ---CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHHH---------HHHH
T ss_pred hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHHH---------HHHH
Confidence 2223345678999999999984322222 23444444432222 3999999999987531011111 2223
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+..++ .+||+++.++.++++.+.+.+.
T Consensus 140 ~~~~~~~~~------~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 140 ALDYGIKFM------ETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHHHTCEEE------ECCC---CCHHHHHHHHHHHHH
T ss_pred HHHcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 333343333 4688889999999998877653
No 68
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=3.5e-17 Score=129.15 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=94.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||..... ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAEN--KEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA-----------SL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhh-----------hh
Confidence 37999999999999999999997764211 1111222222223333 33 367899999954311 11
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcc--hhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~--~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+..+|++++|+|++++.+..+ ..++..+........ |+++|+||+|+.... .....+. ...+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~~~~v~~~~--------~~~~~ 138 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI--IIALVGNKIDXLQEGGERKVAREE--------GEKLA 138 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGSSCCCCSCHHH--------HHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCCccccccccCCCHHH--------HHHHH
Confidence 2223468899999999984322222 233444444333333 899999999987431 0111111 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+..++ .+||.++.++.++++.+.+.+
T Consensus 139 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 139 EEKGLLFF------ETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHTTS
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 33343333 467888999999999876543
No 69
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.69 E-value=2.6e-16 Score=137.09 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=98.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC---CC---cceee---------------------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---SG---VTKTC--------------------------------- 58 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~---~~---~t~~~--------------------------------- 58 (352)
...+|+|+|.+|+|||||+|+|+|...++.+... .+ .++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 3479999999999999999999998753322110 00 01100
Q ss_pred ------------------EeEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHhcccCCccEEEEEEecC-CCC
Q 018636 59 ------------------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF 117 (352)
Q Consensus 59 ------------------~~~~~~~~~~~~~~lvDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-~~~ 117 (352)
....+..+.+..+.+|||||+...... ...+...+......++..+|++++|++.. ..+
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000012223567999999999752211 11122334444445556889999999874 344
Q ss_pred CHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccc---
Q 018636 118 SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG--- 193 (352)
Q Consensus 118 ~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~--- 193 (352)
...+ ...+..+.. .+ .|+++|+||+|..... ..+.+++.. .+..++..++. ....|+.+
T Consensus 183 ~~~~~~~i~~~~~~-~~----~~~i~v~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~---v~~~sa~~~~~ 245 (315)
T 1jwy_B 183 ANSDALQLAKEVDP-EG----KRTIGVITKLDLMDKG-TDAMEVLTG--------RVIPLTLGFIG---VINRSQEDIIA 245 (315)
T ss_dssp TTCSHHHHHHHHCS-SC----SSEEEEEECTTSSCSS-CCCHHHHTT--------SSSCCTTCEEE---CCCCCHHHHSS
T ss_pred hhhHHHHHHHHhCC-CC----CcEEEEEcCcccCCcc-hHHHHHHhC--------CCccCCCCeEE---EecCChhhhcc
Confidence 4333 244444432 12 3899999999998652 112222221 00011123333 33446655
Q ss_pred hHHHHHHHHHHHHHHHh
Q 018636 194 TEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 194 ~~~~~~L~~~i~~~~~~ 210 (352)
+.++.++++.+...++.
T Consensus 246 ~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 246 KKSIRESLKSEILYFKN 262 (315)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 68899999999988876
No 70
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.69 E-value=3.6e-16 Score=125.36 Aligned_cols=160 Identities=22% Similarity=0.196 Sum_probs=96.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++... ......|..... ..+.+ ++ ..+.+|||||.... ..+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~~ 83 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF----VEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAIR 83 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC----CCSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC----CCcCCCccceEEEEEEEE-CCEEEEEEEEECCCCccc--------HHHH
Confidence 458999999999999999999997664 111222222222 22233 44 36789999996542 1111
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
...+..+|++++|+++++..+-. ...++..+...... ...|+++|+||+|+........++ ...+.
T Consensus 84 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 150 (187)
T 2a9k_A 84 ---DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 150 (187)
T ss_dssp ---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred ---HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHH---------HHHHH
Confidence 12234679999999998332211 22344444443321 123899999999986531111121 23334
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ .+|+.++.++.++++.+.+.+.
T Consensus 151 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 151 EQWNVNYV------ETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeCCCCCCCHHHHHHHHHHHHH
Confidence 44444433 4678888999999998877664
No 71
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=6.8e-16 Score=125.28 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=98.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++.... . ....+++.......+.+ ++ ..+.+|||||... +..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 90 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-P-GQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRS 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-T-TCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-C-CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 3479999999999999999999876541 1 11112223333333444 44 3678999999432 223
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 159 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQR---------AEEFSE 159 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHHH---------HHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHHH
Confidence 34456678999999999883322211 23444454443322 3899999999986431011111 122222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||+++.++.++++.+.+.+.
T Consensus 160 ~~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 160 AQDMYYL------ETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp HHTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3333333 4688889999999998876653
No 72
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.69 E-value=6.8e-16 Score=124.54 Aligned_cols=163 Identities=14% Similarity=0.072 Sum_probs=96.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeC----------CceEEEEeCCCCCCCCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKD----------GQVVNVIDTPGLFDLSAGS 86 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~~~lvDtpG~~~~~~~~ 86 (352)
...+|+|+|.+|+|||||+|.|++...... ...+...... ...+.... ...+.++||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----- 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSK--FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER----- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcC--cccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-----
Confidence 458999999999999999999997654111 1111111111 12222311 24789999999633
Q ss_pred HHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
+.......+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........+ .
T Consensus 83 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~-~----- 149 (195)
T 3bc1_A 83 ------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEE-E----- 149 (195)
T ss_dssp ------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHH-H-----
T ss_pred ------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH-H-----
Confidence 12223345578999999999984333222 234444444322 012389999999998753101111 1
Q ss_pred ChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+....+..++ .+|+.++.++.++++.+.+.+.
T Consensus 150 ---~~~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 150 ---ARELAEKYGIPYF------ETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ---HHHHHHHHTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCCEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 2223333343333 4678888999999998877653
No 73
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=2.6e-16 Score=125.82 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=95.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.|++.......++.+ .....+.+ ++..+.+|||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~-----~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG-----FNVETLSY-KNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT-----CCEEEEEE-TTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc-----cceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 345899999999999999999999765422222222 22233344 578889999999765321 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+.++|++++|+|++++-+-... .++..+..... ....|+++|+||+|+... ...++... .+..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~---------~~~~ 146 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA--LSASEVSK---------ELNL 146 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC--CCHHHHHH---------HTTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCCCC--CCHHHHHH---------HhCc
Confidence 23345789999999999854443322 23333322110 122399999999998754 22222111 1111
Q ss_pred c--C-CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 C--D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~--~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
. . ..+ ....+|+.++.++.++++.+.+.+..
T Consensus 147 ~~~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 147 VELKDRSW----SIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp TTCCSSCE----EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred ccccCCce----EEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 0 1 111 12357889999999999998877643
No 74
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.2e-16 Score=128.81 Aligned_cols=163 Identities=17% Similarity=0.106 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|+|..|+|||||+|.|++........ .+.+.......+... .+..+.+|||||. ..+...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~ 88 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV--STVGIDFKVKTVYRHEKRVKLQIWDTAGQ-----------ERYRTI 88 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE--EEETTTEEEEEEEETTTTEEEEEECHHHH-----------HHCHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccC--CCeeeEEEEEEEEECCEEEEEEEEeCCCh-----------HHHHHH
Confidence 34799999999999999999999765311100 111111222222221 3557899999992 223333
Q ss_pred HhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++-+-. ...++..+........ |+++|+||+|+........+ . ...+...
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 157 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA--QVILVGNKCDMEEERVVPTE-K--------GQLLAEQ 157 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH-H--------HHHHHHH
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccccccCHH-H--------HHHHHHH
Confidence 444557899999999998332221 1234455544332333 89999999998643101111 1 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ .+|++++.++.++++.+.+.+..
T Consensus 158 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 158 LGFDFF------EASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp HTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 344333 46888899999999998877643
No 75
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.69 E-value=5.6e-16 Score=125.87 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=96.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|..|+|||||+|.|++..... ....+++.......+.+ ++ ..+.+|||||.... ..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~ 93 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE--RQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------RT 93 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------HH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC--CCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HH
Confidence 34799999999999999999998765411 11111112222333334 44 47889999995431 11
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+-.. ..++..+....... .|++||+||+|+........++ ...+..
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 162 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLAE---------AQSLAE 162 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHHH---------HHHHHH
Confidence 22234468899999999883322211 23444444433222 3899999999987531011111 233444
Q ss_pred hcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+. .++ .+||+++.++.++++.+.+.+..
T Consensus 163 ~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 163 HYDILCAI------ETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp HTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 4444 333 56888899999999998877654
No 76
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.8e-16 Score=127.87 Aligned_cols=163 Identities=23% Similarity=0.153 Sum_probs=97.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
....+|+|+|.+|+|||||+|.|++...... . ..+.........+... ....+.+|||||..... .
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 87 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN-I-SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH-----------S 87 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT-C-CCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-----------G
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC-c-CCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-----------h
Confidence 3458999999999999999999998764111 1 1111111222222221 24578899999954321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~---------~~~~~~ 156 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKD---------AKEYAE 156 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 11223467899999999984333222 23444444433222 3999999999986431011111 233344
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|++++.++.+|++.+.+.+.
T Consensus 157 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 157 SIGAIVV------ETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp TTTCEEE------ECBTTTTBSHHHHHHHHHHTCC
T ss_pred HcCCEEE------EEeCCCCcCHHHHHHHHHHHHH
Confidence 4443333 4688889999999999877653
No 77
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.69 E-value=3.6e-16 Score=125.98 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=95.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|..|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||.......
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 86 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSI---------- 86 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhh----------
Confidence 347999999999999999999997654211 1111222222333333 33 46789999996442211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 87 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 154 (191)
T 2a5j_A 87 -TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKREE---------GEAFAR 154 (191)
T ss_dssp -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccccCHHH---------HHHHHH
Confidence 1123357899999999983322222 23444444433222 3899999999986431011111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||+++.++.++++.+.+.+.
T Consensus 155 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 155 EHGLIFM------ETSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp HHTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3343333 4577888999999998876653
No 78
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.69 E-value=4.4e-17 Score=130.17 Aligned_cols=159 Identities=16% Similarity=0.091 Sum_probs=94.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|..|+|||||+|.|++.......++.+ .....+.+ ++..+.+|||||..... ...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~-----~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~ 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-----SNVEEIVI-NNTRFLMWDIGGQESLR-----------SSW 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS-----SSCEEEEE-TTEEEEEEEESSSGGGT-----------CGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc-----eeeEEEEE-CCEEEEEEECCCCHhHH-----------HHH
Confidence 45799999999999999999999876522222222 12233344 67889999999974321 122
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+.++|++++|+|++++.+-... .++..+..... ....|+++|+||+|+... ...++.... +. +....
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~~~~~ 153 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-----LK-LTSIK 153 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT-GGGCC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC--CCHHHHHHH-----hC-ccccc
Confidence 3445789999999999855443322 23333322110 112399999999999754 222221111 00 00000
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
...+. ...+||+++.++.++++.+.+
T Consensus 154 ~~~~~----~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 154 DHQWH----IQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp SSCEE----EEECBTTTTBTHHHHHHHHHT
T ss_pred CCceE----EEEccCCCCcCHHHHHHHHHh
Confidence 11111 125688899999999988754
No 79
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=1.5e-16 Score=144.69 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=89.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+.+|+|+|.+|+|||||+|.|++.......... +.|.......+.+ ++..+.+|||||+.+... .+.........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~-gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~---~ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMP-GTTRDYIEECFIH-DKTMFRLTDTAGLREAGE---EIEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-CceEEEEEEEEEE-CCeEEEEEECCCCCcchh---HHHHHHHHHHH
Confidence 478999999999999999999988642221211 2233443444455 788999999999876321 11111112234
Q ss_pred cccCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
..+..+|++++|+|+++..+..... ...++..+ .. .|+++|+||+|+... ..... .. +... ..
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~---~piIvV~NK~Dl~~~--~~~~~--~~-----l~~~---~~ 371 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH-PA---AKFLTVANKLDRAAN--ADALI--RA-----IADG---TG 371 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TT---SEEEEEEECTTSCTT--THHHH--HH-----HHHH---HT
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CC---CCEEEEEECcCCCCc--cchhH--HH-----HHhc---CC
Confidence 4667899999999999666652221 22223322 21 399999999999865 33221 11 2211 01
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.. ...+||+++.++.+|++.|.+.+.
T Consensus 372 ~~------~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TE------VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SC------EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred Cc------eEEEEECCCCCHHHHHHHHHHHHh
Confidence 12 235789999999999999999886
No 80
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.68 E-value=5.9e-16 Score=126.23 Aligned_cols=161 Identities=22% Similarity=0.189 Sum_probs=95.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|.+|+|||||+|.|++... ......|.... ...+.+ ++ ..+.+|||||.... ..+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~ 78 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF----VEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAI 78 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC----CTTCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhh--------HHH
Confidence 3458999999999999999999997764 11122222221 222333 44 36789999996542 111
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
....+..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+........++ ...+
T Consensus 79 ---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~ 145 (206)
T 2bov_A 79 ---RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNR 145 (206)
T ss_dssp ---HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred ---HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHHH
Confidence 1122346799999999983322212 234444444332 1123999999999987531111221 2223
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+..++ .+|+.++.++.++++.+.+.+.
T Consensus 146 ~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 146 AEQWNVNYV------ETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp HHHHTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 333343333 4677888999999998877653
No 81
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.68 E-value=1.2e-16 Score=127.37 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=96.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
+.....+|+|+|..|+|||||+|.|++... ......|+...+. .+.+ ++ ..+.+|||||........ .
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~----~ 75 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYF----VSDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR----E 75 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSC----CSSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH----H
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcC----ccccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHH----H
Confidence 444568999999999999999999998754 1222223222222 2233 44 467889999976532111 1
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhH
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPL 169 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~ 169 (352)
..+..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+... ..+ .+. .
T Consensus 76 -------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~v~~~~--------~ 137 (181)
T 2fn4_A 76 -------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQ--RQVPRSE--------A 137 (181)
T ss_dssp -------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGG--CCSCHHH--------H
T ss_pred -------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--cccCHHH--------H
Confidence 11235799999999983222221 223333322221 112389999999998753 211 111 1
Q ss_pred HHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+....+..++ .+|++++.++.++++.+.+.+..
T Consensus 138 ~~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 138 SAFGASHHVAYF------EASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 223333333333 46788899999999998877644
No 82
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.68 E-value=4.8e-16 Score=126.32 Aligned_cols=165 Identities=17% Similarity=0.144 Sum_probs=98.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.+++...... ...+.+.... ..+.+ ++ ..+.+|||||..... .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~ 88 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYI-ADIEV-DGKQVELALWDTAGQEDYD-----------R 88 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGGT-----------T
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEE-EEEEE-CCEEEEEEEEECCCchhHH-----------H
Confidence 347999999999999999999997654111 1111111111 12233 43 367899999954321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCC-hh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KP 168 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~-~~ 168 (352)
.....+..+|++++|+|++++-+-.. ..++..+..... . .|+++|+||+|+... ....+.+.. ... ..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 163 (201)
T 2gco_A 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD--EHTRRELAKMKQEPVRSEE 163 (201)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC--ccchhhhcccccCcCCHHH
Confidence 22335578999999999983322222 234455554332 2 289999999999865 322222211 000 11
Q ss_pred HHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
...+....+. .++ .+||+++.++.+|++.+.+.+
T Consensus 164 ~~~~~~~~~~~~~~------~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 164 GRDMANRISAFGYL------ECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 2333444443 232 568888999999999887754
No 83
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2.3e-16 Score=127.93 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=95.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.|++..... ....|....... ... + ...+.+|||||.... ..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~- 72 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD----TYIPTIEDTYRQVISC-DKSVCTLQITDTTGSHQF--------PAM- 72 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC----TTSCCCCEEEEEEEEE-TTEEEEEEEEECCGGGSC--------HHH-
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC----cccCccccceeEEEEE-CCEEEEEEEEeCCChHHh--------HHH-
Confidence 45899999999999999999999765411 111122111111 222 3 336789999996542 111
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|+... ....+. ...+.
T Consensus 73 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 140 (199)
T 2gf0_A 73 --QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDTRE--------AQAVA 140 (199)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCHHH--------HHHHH
T ss_pred --HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCHHH--------HHHHH
Confidence 1122346799999999983222221 2244444444322122389999999998754 211111 12223
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+..++ .+||.++.++.+|++.+.+.+..
T Consensus 141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 141 QEWKCAFM------ETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHHTCEEE------ECBTTTTBSHHHHHHHHHHHCSS
T ss_pred HHhCCeEE------EEecCCCCCHHHHHHHHHHHHhh
Confidence 33333333 46888899999999998887654
No 84
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.68 E-value=3.4e-16 Score=125.14 Aligned_cols=162 Identities=23% Similarity=0.177 Sum_probs=94.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCCce--EEEEeCCCCCCCCCCcHHHHHH
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
.....+|+|+|.+|+|||||+|.|++... ......+.... ...... ++.. +.+|||||....... .
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----~-- 83 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIF----VDDYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAM----R-- 83 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCC----CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSS----H--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHH----H--
Confidence 34568999999999999999999997654 11222222222 222233 4443 456999996542211 1
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
...+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+........+ . ...
T Consensus 84 -----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~-~--------~~~ 148 (183)
T 3kkq_A 84 -----EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRD-Q--------GKE 148 (183)
T ss_dssp -----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHH-H--------HHH
T ss_pred -----HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHH-H--------HHH
Confidence 112246799999999984322211 233333433222 112389999999998753101111 1 222
Q ss_pred HHHhcCCcEEEEcCCCccccc-chHHHHHHHHHHHHHHH
Q 018636 172 ILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa~-~~~~~~~L~~~i~~~~~ 209 (352)
+....+..++ .+|+. ++.++.++++.+.+.+.
T Consensus 149 ~~~~~~~~~~------~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 149 MATKYNIPYI------ETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHTCCEE------EEBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHHhCCeEE------EeccCCCCCCHHHHHHHHHHHHh
Confidence 3334344444 35777 78999999999887664
No 85
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.68 E-value=8.3e-16 Score=123.45 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=100.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|++|+|||||+|.|+|...+.. ..+ +.+.......+.+ ++..+.+|||||......... .+.+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~-~~~-~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIG-NWP-GVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEE-ECT-TSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-CCC-CeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence 458999999999999999999998754322 221 2333444444444 678899999999876532211 11222111
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.. ...++++++|+|.+ .+ .....++..+.. .. .|+++|+||+|+... ..+. . ....+....+
T Consensus 81 ~~-~~~~~~~i~v~d~~-~~-~~~~~~~~~~~~---~~--~piilv~nK~Dl~~~--~~~~---~-----~~~~~~~~~~ 142 (188)
T 2wjg_A 81 II-NEKPDLVVNIVDAT-AL-ERNLYLTLQLME---MG--ANLLLALNKMDLAKS--LGIE---I-----DVDKLEKILG 142 (188)
T ss_dssp HH-HHCCSEEEEEEEGG-GH-HHHHHHHHHHHT---TT--CCEEEEEECHHHHHH--TTCC---C-----CHHHHHHHHT
T ss_pred Hh-ccCCCEEEEEecch-hH-HHHHHHHHHHHh---cC--CCEEEEEEhhhcccc--ccch---H-----HHHHHHHHhC
Confidence 11 12578999999987 32 112223333322 12 289999999997533 1111 1 1333444444
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
..++ .+|++++.++.+|++.+.+.+...
T Consensus 143 ~~~~------~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 143 VKVV------PLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred CCeE------EEEecCCCCHHHHHHHHHHHHHhc
Confidence 4443 468888999999999999887653
No 86
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=138.52 Aligned_cols=161 Identities=12% Similarity=0.043 Sum_probs=95.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++....... .|.......+.. .+..+.||||||..... ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-----pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECC-----C-----------CSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-----cccceEEEEEec-CcEEEEEEECCCCHhHH-----------HHH
Confidence 3469999999999999999999987642211 233344444444 67889999999944321 112
Q ss_pred hcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+..+|++++|+|+++.-+-.. ..+...+...... ..|++||+||+|+... ...+++... +......
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~--~~~~~i~~~-----~~~~~~~ 297 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNA--MNAAEITDK-----LGLHSLR 297 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC--CCHHHHHHH-----HTCTTCC
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcc--cCHHHHHHH-----hchhhhh
Confidence 223468899999999984433322 2222332222111 2389999999999865 333332221 1100000
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+. ...+||+++.++.+|++.|.+.+.
T Consensus 298 -~~~~~----~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 298 -HRNWY----IQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp -SSCEE----EEECBTTTTBTHHHHHHHHHHHHT
T ss_pred -cCCCE----EEEEECCCCcCHHHHHHHHHHHHH
Confidence 01111 125688899999999999888764
No 87
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.68 E-value=9.8e-16 Score=123.19 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=93.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH-
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV- 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~- 94 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||... +.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD--RTEATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------FRK 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS--SCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------HHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 44799999999999999999999765421 11122222233333334 33 4788999999422 21
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEI 172 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~ 172 (352)
......+..+|++++|+|+++..+-.. ..++..+...+. ....|+++|+||+|+... ..+ .+. ...+
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~v~~~~--------~~~~ 153 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSA--IQVPTDL--------AQKF 153 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGG--CCSCHHH--------HHHH
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--ceeCHHH--------HHHH
Confidence 122233468899999999983322212 234444444431 112389999999998643 111 111 2223
Q ss_pred HHhcCCcEEEEcCCCcccccch---HHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGT---EQVRQLLSLVNSVI 208 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~---~~~~~L~~~i~~~~ 208 (352)
....+..++ .+|++++ .++.++++.+.+.+
T Consensus 154 ~~~~~~~~~------~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 154 ADTHSMPLF------ETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp HHHTTCCEE------ECCSSSGGGGSCHHHHHHHHC---
T ss_pred HHHcCCEEE------EEeCCcCCcccCHHHHHHHHHHHH
Confidence 333343343 4577778 88999988876554
No 88
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.68 E-value=5.9e-16 Score=125.65 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=92.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||... +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 89 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD--SNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER-----------FRS 89 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHH-----------HSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHh-----------HHH
Confidence 458999999999999999999997754111 1111222222233333 44 5788999999322 222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+.........+ ...+..
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 158 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLE---------ASRFAQ 158 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHHH---------HHHHHH
Confidence 22234468899999999984322222 23344444433222 3899999999986431011111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||+++.++.++++.+.+.+.
T Consensus 159 ~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 159 ENELMFL------ETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HTTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3343333 4678889999999998877653
No 89
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.68 E-value=7.2e-16 Score=124.38 Aligned_cols=162 Identities=18% Similarity=0.118 Sum_probs=95.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.........+... .+..+.+|||||.......
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 90 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHD--SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI----------- 90 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSS--CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-----------
Confidence 347999999999999999999998764211 11122222222222221 2356789999998653211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+........++ ...+...
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 159 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQAREVPTEE---------ARMFAEN 159 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCcccccccCHHH---------HHHHHHH
Confidence 1123357899999999984322111 2333444333222 23899999999987531011111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+..++ .+||.++.++.++++.+.+.+.
T Consensus 160 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 160 NGLLFL------ETSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp TTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 343333 4678888999999998877653
No 90
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.68 E-value=3.5e-16 Score=127.66 Aligned_cols=163 Identities=15% Similarity=0.071 Sum_probs=97.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 71 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQ----------- 71 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------
Confidence 345899999999999999999999876411 11222223333333333 33 467899999954321
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc--cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
......+.++|++++|+|++++.+... ..++..+...... ....|+++|+||+|+... ....+. ...
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~ 141 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQA 141 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHH
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH--------HHH
Confidence 112234568899999999984322222 2334444433320 012389999999998743 221111 222
Q ss_pred HHH-hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 172 ILQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+.. ..+..++ .+||+++.++.++++.+.+.+.
T Consensus 142 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 142 WCYSKNNIPYF------ETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp HHHHTTSCCEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 222 2222332 5688889999999998877664
No 91
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.68 E-value=1.1e-16 Score=144.94 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
+.+|+|+|.+|+|||||+|.|+|......... .+.|.......+.+ ++..+.+|||||+.+..... .........
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~v---e~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL-PGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQV---EKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC-TTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCeeEEEEEEEEEE-CCEEEEEEECCccccchhHH---HHHHHHHHh
Confidence 46899999999999999999998753211111 22333333333444 78899999999986532111 111112233
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+..+|++++|+|++++++..+..++..+.. .|+++|+||+|+... .... .+.. +. ...
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~~-----~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----PE-----NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----CT-----TCC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----hc-----cCC
Confidence 45678999999999998888777666555432 289999999999865 2221 1111 00 011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
. ...+|++++.++++|++.|.+.+...
T Consensus 359 ~------~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 359 Q------IVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp C------EEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred c------EEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 2 23578899999999999999988653
No 92
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.68 E-value=9.2e-16 Score=122.75 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=95.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
+.....+|+|+|.+|+|||||+|.+++..... ....|.......+.+ ++. .+.+|||||.... .
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ----EESPEGGRFKKEIVV-DGQSYLLLIRDEGGPPEL--------Q- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC----CCCTTCEEEEEEEEE-TTEEEEEEEEECSSSCCH--------H-
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC----CcCCCcceEEEEEEE-CCEEEEEEEEECCCChhh--------h-
Confidence 34456899999999999999999988765411 111122211223333 443 4567999996541 1
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcH-HHHhcccCChhHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLK 170 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l-~~~l~~~~~~~~~ 170 (352)
.+..+|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+.......+ .+ ...
T Consensus 82 -------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~--------~~~ 145 (184)
T 3ihw_A 82 -------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDDS--------RAR 145 (184)
T ss_dssp -------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCHH--------HHH
T ss_pred -------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCHH--------HHH
Confidence 2235799999999984333233 234444443321 12238999999999852200111 11 123
Q ss_pred HHHHhcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 171 ~~~~~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+....+ ..++ .+||+++.++.++++.+.+.+..
T Consensus 146 ~~~~~~~~~~~~------e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 146 KLSTDLKRCTYY------ETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHHTTTCEEE------EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCeEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 3444444 3333 46888899999999988776543
No 93
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.6e-15 Score=120.22 Aligned_cols=163 Identities=21% Similarity=0.185 Sum_probs=89.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++.......+..+ .+. ....+.+ ++. .+.+|||||..... ...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~-~~~--~~~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG-EDV--YERTLTV-DGEDTTLVVVDTWEAEKLD---------KSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSS-SSE--EEEEEEE-TTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccc-cce--eEEEEEE-CCEEEEEEEEecCCCCccc---------hhh
Confidence 45899999999999999999999876522222211 121 1222333 433 67899999965421 011
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++-+-... .++..+..... ....|+++|+||+|+........++ ...+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 139 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACAV 139 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHHH
Confidence 112344678999999999843222222 23333333211 1123899999999997541111111 112222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||+++.++.++++.+.+.+.
T Consensus 140 ~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 140 VFDCKFI------ETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHTSEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 2233333 5688889999999998877653
No 94
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.67 E-value=6.1e-16 Score=123.91 Aligned_cols=166 Identities=16% Similarity=0.070 Sum_probs=98.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||++.+++.... .....|.... ...+.+ ++. .+.+|||||.....
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 67 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD----------- 67 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC----SSCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC----CCcCCcccceeEEEEEE-CCEEEEEEEEECCCCHhHH-----------
Confidence 3479999999999999999999866531 1111122111 112223 443 45699999975421
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCC-h
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-K 167 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~-~ 167 (352)
......+..+|++++|+|++++.+..+. .++..+....+ ..|+++|+||+|+... ....+.+.. ... .
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 142 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 142 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHH
Confidence 1223355789999999999843332222 34455554433 2399999999998754 222221110 000 1
Q ss_pred hHHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+....+. .++ .+||.++.++.+|++.+.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 143 QGLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCcEEE------EecCCCccCHHHHHHHHHHHHhc
Confidence 12233334343 333 56888899999999999887743
No 95
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.67 E-value=5e-17 Score=147.51 Aligned_cols=162 Identities=17% Similarity=0.122 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|||++|+|||||+|.|+|......... .++|.........+ .+..+.+|||||+..... .+...+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~-~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~---~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDT-PGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDE---PFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCCccceEEEEEEE-CCceEEEEECCCCCCcch---hHHHHHHHHHHH
Confidence 6899999999999999999998764222222 22344444444444 577899999999864321 134455555555
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
++..+|++++|+|+..+++..+......+.. .+ .|+++|+||+|.... . ..... ++ . .+
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-~~----~pvilv~NK~D~~~~--~---~~~~~----~~----~-lg-- 137 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-TK----KPVVLAVNKLDNTEM--R---ANIYD----FY----S-LG-- 137 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-CC----SCEEEEEECCCC----------CCCS----SG----G-GS--
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCccc--h---hhHHH----HH----H-cC--
Confidence 6678999999999988888877666555543 22 399999999998743 1 00111 11 1 11
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....++||.++.++.+|++.+.+.+..
T Consensus 138 ---~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 138 ---FGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ---SCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred ---CCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 1123467899999999999999887753
No 96
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=4.2e-16 Score=127.25 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=97.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||+|.|++.... .....|+.... ..+.. ++ ..+.+|||||......
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 88 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP----EVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDR----------- 88 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTT-----------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC----CcCCCcccceEEEEEEE-CCEEEEEEEEECCCcHHHHH-----------
Confidence 479999999999999999999987641 11111221111 12233 43 4678999999765321
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCC-hh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KP 168 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~-~~ 168 (352)
.....+..+|++++|+|++++-+-.. ..++..+..... . .|+++|+||+|+... ....+.+.. ... ..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD--EHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHH
Confidence 12234578999999999983322222 334555554332 2 289999999999765 333222211 001 11
Q ss_pred HHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+....+. .++ .+||+++.++.+|++.+.+.+.
T Consensus 164 ~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 164 GRAMAVRIQAYDYL------ECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 2223333333 222 5688889999999999988764
No 97
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.67 E-value=9.5e-16 Score=120.50 Aligned_cols=159 Identities=17% Similarity=0.166 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|.+|+|||||+|.|++... ......|...... .+... ....+.+|||||...... +..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~~----- 69 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF----VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----MRD----- 69 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC----CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----HHH-----
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH----HHH-----
Confidence 47999999999999999999997654 1111222222222 12221 134678999999765321 111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
..+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+........++ ...+...
T Consensus 70 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T 1c1y_A 70 --LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ 137 (167)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred --HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHH---------HHHHHHH
Confidence 12235799999999884322122 234444444322 1123899999999987531011111 2223333
Q ss_pred c-CCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
. +..++ ++||.++.++.++++.+.+.+
T Consensus 138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNCAFL------ESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCcEE------EecCCCCCCHHHHHHHHHHHH
Confidence 3 22232 568888999999999887654
No 98
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.67 E-value=1.4e-15 Score=139.11 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=110.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc------ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA------FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
...+|+++|..++|||||+|.|+|... +.. ....++|....+..+.+ ++..+++|||||. .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~-e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh-----------~ 84 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPE-SQKRGITIDIGFSAFKL-ENYRITLVDAPGH-----------A 84 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEE-TTEEEEECCCSSH-----------H
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccc-cccCccEEecceEEEEE-CCEEEEEEECCCh-----------H
Confidence 357999999999999999999998761 111 11123455554555555 6789999999993 3
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
.+...+...+..+|++++|+|+++.........+..+.. ++- |.++++||+|+.+. ..++..... +..
T Consensus 85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~i----p~IvviNK~Dl~~~--~~~~~~~~~-----l~~ 152 (482)
T 1wb1_A 85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEMI-----MKS 152 (482)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCC----CEEEEEECCCcccc--hhHHHHHHH-----HHH
Confidence 344444455678999999999987777777777776654 343 77999999999865 555554444 555
Q ss_pred HHHhc-CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 172 ILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 172 ~~~~~-~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
++... +.. .....+.||.++.++.+|++.+...++.
T Consensus 153 ~l~~~~~~~---~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 153 ILQSTHNLK---NSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp HHHHSSSGG---GCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHhhhcccc---cceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 55443 110 0122357888999999999999987753
No 99
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.67 E-value=4.8e-16 Score=126.94 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=71.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC--CcccccCCCCCccee--eEeEEEEeeC---CceEEEEeCCCCCCCCCCcHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR--KAFKASAGSSGVTKT--CEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVG 90 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~--~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~lvDtpG~~~~~~~~~~~~ 90 (352)
...+|+|+|.+|+|||||+|.|++. .. ......|+. .....+.+.+ ...+.+|||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------- 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKF----LKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD---------- 84 (208)
T ss_dssp EEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTH----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcc----cCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH----------
Confidence 4479999999999999999999987 32 111122222 2333344422 3468999999952
Q ss_pred HHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc-cccceEEEEEeCCCCCC-cchhcHHHHhcccCCh
Q 018636 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLE-DHEKTLEDFLGHECPK 167 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~-~~~~~l~~~l~~~~~~ 167 (352)
.+.......+.++|++++|+|++++.+-.. ..++..+...... ....|+++|+||+|+.. ......++
T Consensus 85 -~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~-------- 155 (208)
T 2yc2_C 85 -LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDM-------- 155 (208)
T ss_dssp -HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHH--------
T ss_pred -HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHH--------
Confidence 233445556788999999999984333222 2344445443320 01239999999999875 20011111
Q ss_pred hHHHHHHhcCCcEEEEcCCCcccccc-hHHHHHHHHHHHHHHH
Q 018636 168 PLKEILQLCDNRCVLFDNKTKDEAKG-TEQVRQLLSLVNSVIV 209 (352)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~sa~~-~~~~~~L~~~i~~~~~ 209 (352)
...+....+..++ .+|+.+ +.++.++++.+.+.+.
T Consensus 156 -~~~~~~~~~~~~~------~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 156 -AQDWATTNTLDFF------DVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp -HHHHHHHTTCEEE------ECCC-------CHHHHHHHHHHH
T ss_pred -HHHHHHHcCCEEE------EeccCCCCcCHHHHHHHHHHHHH
Confidence 2334444443333 467888 8999999998877653
No 100
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.67 E-value=9.7e-16 Score=120.17 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=93.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+++|.+|+|||||+|.|++..... ....+.... ...+.. ++ ..+.+|||||..... .+..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~~~---- 69 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD----ECDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS----AMRD---- 69 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS----CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC----HHHH----
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc----ccCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh----HHHH----
Confidence 3689999999999999999999775411 111122111 122223 33 356889999965421 1111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
..+..+|++++|+++++..+... ..++..+..... ....|+++|+||+|+... ....+. ...+..
T Consensus 70 ---~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~--~~~~~~--------~~~~~~ 135 (166)
T 2ce2_X 70 ---QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAAR--TVESRQ--------AQDLAR 135 (166)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC--CSCHHH--------HHHHHH
T ss_pred ---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhc--ccCHHH--------HHHHHH
Confidence 12235799999999873322222 234444444332 112389999999998754 222222 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|+.++.++.++++.+.+.+.
T Consensus 136 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 136 SYGIPYI------ETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHTCCEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEE------EecCCCCCCHHHHHHHHHHHHH
Confidence 3343333 4677888999999999887653
No 101
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.67 E-value=4.5e-16 Score=122.51 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=95.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+.. ...+.+|||||.......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 70 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK--DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI----------- 70 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC-----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH-----------
Confidence 35799999999999999999999865411 1111122222233333311 346789999995442211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++.+-.. ..++..+..... . .|+++|+||+|+........++ ...+...
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 138 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-D--IPTALVQNKIDLLDDSCIKNEE---------AEGLAKR 138 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-S--CCEEEEEECGGGGGGCSSCHHH---------HHHHHHH
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccCcccccCHHH---------HHHHHHH
Confidence 1123357899999999984322211 234444444332 2 2899999999987531011111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+..++ .+|+.++.++.++++.+.+.+
T Consensus 139 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 139 LKLRFY------RTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp HTCEEE------ECBTTTTBSSHHHHHHHHHHH
T ss_pred cCCeEE------EEecCCCCCHHHHHHHHHHHH
Confidence 344333 467888899999999887765
No 102
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=6.2e-16 Score=122.15 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE-EEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||+|.|++...... ...+....... ... ++ ..+.+|||||..... ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-------~~~~- 69 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRES----YIPTVEDTYRQVISC-DKSICTLQITDTTGSHQFP-------AMQR- 69 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSS----CCCCSCEEEEEEEEE-TTEEEEEEEEECCSCSSCH-------HHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCCccccEEEEEEE-CCEEEEEEEEECCCchhhH-------HHHH-
Confidence 47999999999999999999998654211 11111111111 122 32 367899999976421 1111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
..+..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|+... ..+... ....+..
T Consensus 70 ---~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~ 137 (172)
T 2erx_A 70 ---LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALAR 137 (172)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHH
T ss_pred ---HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHH
Confidence 12245799999999983322221 2344445444321112389999999998654 211100 0122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+|+.++.++.++++.+.+.+.
T Consensus 138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 138 TWKCAFM------ETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHTCC
T ss_pred HhCCeEE------EecCCCCcCHHHHHHHHHHHHh
Confidence 3333333 4688889999999999877653
No 103
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=5.7e-16 Score=125.10 Aligned_cols=164 Identities=17% Similarity=0.072 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|..|+|||||++.|++... . .....|+...+ ..+.+ ++ ..+.+|||||......
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~---------- 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-P---EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR---------- 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-C---CSCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C---CCCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhH----------
Confidence 447999999999999999999997653 1 11112221111 22233 33 4678999999765321
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cCC-h
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-K 167 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~~-~ 167 (352)
.....+.++|++++|+|++++-+-... .++..+..... . .|+++|+||+|+... ....+.+.. ... .
T Consensus 82 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 155 (194)
T 2atx_A 82 -LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVE 155 (194)
T ss_dssp -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHH
T ss_pred -HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--ccchhhcccccCcccCHH
Confidence 123355789999999999843222222 34555555433 2 399999999999765 222211110 000 1
Q ss_pred hHHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+....+. .++ .+||+++.++.++++.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 156 QGQKLAKEIGACCYV------ECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHHTCSCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 12233333333 333 568888999999999887754
No 104
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.67 E-value=7.9e-16 Score=126.25 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=99.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|..|+|||||++.|++... ......|....+. .+.+. ....+.+|||||.... .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY----PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY-----------D 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG-----------T
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC----CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH-----------H
Confidence 3458999999999999999999987654 1221222222222 12221 2346789999995432 1
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh----cccC-Ch
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL----GHEC-PK 167 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l----~~~~-~~ 167 (352)
......+.++|++++|+|++++-+-.. ..++..+..... . .|++||.||+|+... ......+ .... ..
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 164 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S--TRVLLIGCKTDLRTD--LSTLMELSHQKQAPISYE 164 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-T--SEEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--hhhhhhhcccccCccCHH
Confidence 123345678999999999985433333 345555655432 2 299999999998753 1100000 0000 01
Q ss_pred hHHHHHHhcCC-cEEEEcCCCcccccchHH-HHHHHHHHHHHHHh
Q 018636 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIVQ 210 (352)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~-~~~L~~~i~~~~~~ 210 (352)
....+....+. .++ .+||+++.+ +.++++.+...+..
T Consensus 165 ~~~~~~~~~~~~~~~------e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 165 QGCAIAKQLGAEIYL------EGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEE------EeccCCCcccHHHHHHHHHHHHhc
Confidence 12334444444 333 468888998 99999998887643
No 105
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.6e-16 Score=127.11 Aligned_cols=163 Identities=14% Similarity=0.083 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
...+|+|+|.+|+|||||+|.|++..... ....+.+.......+.+.. ...+.+|||||.......
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP--ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL----------- 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence 34799999999999999999999775411 1111222222223333311 356789999996542211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+... ....+. ...+...
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 149 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENR--EVDRNE--------GLKFARK 149 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSC--CSCHHH--------HHHHHHH
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccc--ccCHHH--------HHHHHHH
Confidence 1123357899999999984322221 223333333221 112389999999998643 211111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.+..++ .+|++++.++.++++.+.+.+..
T Consensus 150 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 150 HSMLFI------EASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TTCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCEEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 343333 46788899999999999887754
No 106
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.67 E-value=3.6e-16 Score=124.41 Aligned_cols=160 Identities=17% Similarity=0.148 Sum_probs=95.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|..|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.+|||||..... .
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~ 78 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR-----------S 78 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------G
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------H
Confidence 34799999999999999999999765411 11222233333333334 43 468899999954321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+.++|++++|+|++++.+.. ...++..+....+... |+++|+||+|+........++ ...+..
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 147 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV--IIMLVGNKTDLSDKRQVSTEE---------GERKAK 147 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCcccccCcCCHHH---------HHHHHH
Confidence 1112235789999999997332211 2234444444333233 899999999986431111111 122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..++ .+|+.++.++.++++.+.+.+
T Consensus 148 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 148 ELNVMFI------ETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HHTCEEE------EEBTTTTBSHHHHHHHHHHTC
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 3343333 467788899999999887654
No 107
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.66 E-value=3.6e-16 Score=126.68 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=90.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|++|+|||||+|.|++.......+ |.......+.+ ++..+.+|||||..... ...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~ 86 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELTI-AGMTFTTFDLGGHIQAR-----------RVW 86 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------C-----CCCCSCEEEEE-TTEEEEEEEECC----C-----------CGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCC-----CCCceeEEEEE-CCEEEEEEECCCcHhhH-----------HHH
Confidence 44799999999999999999999865421111 22222233444 66888999999965421 122
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHH--H
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEI--L 173 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~--~ 173 (352)
...+.++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ..+.+.+++.......-... +
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccccc
Confidence 334568899999999984333222 223333322111 112399999999998753 11222222221000000000 0
Q ss_pred Hh-cCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 174 QL-CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 174 ~~-~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.. ..... ...++||+++.++.++++.+.+
T Consensus 166 ~~~~~~~~----~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 166 KELNARPL----EVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TTCCSCCE----EEEECBTTTTBSHHHHHHHHHT
T ss_pred ccccCceE----EEEEEECCCCCCHHHHHHHHHH
Confidence 00 00111 1235789999999999998764
No 108
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.66 E-value=1.3e-15 Score=128.82 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|.+|||||||+|.|+|...+.. ..+ ++|.......+.. +..+.+|||||......... .+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~-~~p-g~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVG-NWP-GVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCC-SSS-CCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc-CCC-CCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 47899999999999999999999764322 222 2333322222221 66789999999886543221 122222222
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
. ...+|++++|+|++ .+. ....+...+.. .+. |+++++||+|.... ..+.. ....+....+.
T Consensus 77 ~-~~~~d~vi~V~D~t-~~e-~~~~~~~~l~~-~~~----p~ilv~NK~Dl~~~--~~~~~--------~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 L-SQRADSILNVVDAT-NLE-RNLYLTTQLIE-TGI----PVTIALNMIDVLDG--QGKKI--------NVDKLSYHLGV 138 (272)
T ss_dssp H-TTCCSEEEEEEEGG-GHH-HHHHHHHHHHH-TCS----CEEEEEECHHHHHH--TTCCC--------CHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCC-chH-hHHHHHHHHHh-cCC----CEEEEEEChhhCCc--CCcHH--------HHHHHHHHcCC
Confidence 1 14789999999998 321 11222222332 232 89999999997533 11110 12233333343
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.++ ++||.++.++.+|++.+.+.+.
T Consensus 139 ~vi------~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 139 PVV------ATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CEE------ECBTTTTBSHHHHHHHHHHSCT
T ss_pred CEE------EEEccCCCCHHHHHHHHHHHHh
Confidence 333 5788899999999999987654
No 109
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.66 E-value=7.8e-15 Score=129.61 Aligned_cols=167 Identities=16% Similarity=0.126 Sum_probs=105.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKC 96 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~-~~~~~~~~~ 96 (352)
...+|+|+|.+|+|||||+|.|+|... ..+.. ...|.......+.. .+..+.++||||+.+...... ..... .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~-~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~ 239 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASY-PFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQ---A 239 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECC-TTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHH---H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCC-CCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHH---H
Confidence 447999999999999999999998763 22111 12233334444444 577889999999876432211 11111 1
Q ss_pred HhcccCCccEEEEEEecCCC--CCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 97 LGMAKDGIHAFLVVFSVTNR--FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~--~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
+......+|++++|+|+++. ++..+ ..++..+...++ ..|+++|+||+|.... ..+++. ...+
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~--~~~~~~---------~~~~ 305 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE--ENIKRL---------EKFV 305 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH--HHHHHH---------HHHH
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh--HHHHHH---------HHHH
Confidence 22223468999999998732 24433 456666666553 1299999999999865 333322 2222
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+..+ ..+||.++.|+.+|++.+.+.+..
T Consensus 306 ~~~~~~~------~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 306 KEKGLNP------IKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHTTCCC------EECBTTTTBTHHHHHHHHHHHHHH
T ss_pred HhcCCCe------EEEeCCCCcCHHHHHHHHHHHHHH
Confidence 2223222 357888999999999998887643
No 110
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.66 E-value=3.3e-16 Score=126.10 Aligned_cols=165 Identities=9% Similarity=0.010 Sum_probs=94.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.+++..... ...|.......+.+ ++..+.++||||..... ...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~ 84 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RLW 84 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TSG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HHH
Confidence 34799999999999999999999765421 11232233344445 67889999999975421 112
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHHHHHh
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
...+.++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ..+.+.+.+.... ..-...+..
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~ 162 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRIEG 162 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC---CCS
T ss_pred HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-ccccccccc
Confidence 334578999999999984433222 223333322111 112389999999998753 1122222222100 000000000
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.... ...++||+++.++.++++.+.+
T Consensus 163 -~~~~----~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 163 -QRPV----EVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp -SCCE----EEEECBTTTTBSHHHHHHHHHT
T ss_pred -cceE----EEEEeECCcCCCHHHHHHHHHh
Confidence 0111 1235788999999999998754
No 111
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=4.5e-17 Score=148.65 Aligned_cols=162 Identities=18% Similarity=0.123 Sum_probs=99.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+|+|++|+|||||+|.|+|........ ..++|.........+ .+..+.+|||||+.... ..+.+.+.....
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~-~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~ 97 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVED-TPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAE 97 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcceeEEEEEEEE-CCceEEEEECCCCCCcc---hHHHHHHHHHHH
Confidence 4699999999999999999999876422212 223344444444444 57789999999987432 222445555555
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
.++..+|++++|+|....++..+...+.++.. .+ .|+++|+||+|.... . ..... ......+
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-~~----~pvilV~NK~D~~~~--~---~~~~e--------~~~lg~~ 159 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADEEVAKILYR-TK----KPVVLAVNKLDNTEM--R---ANIYD--------FYSLGFG 159 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-CC----SCEEEEEECC--------------CC--------SGGGSSS
T ss_pred hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-cC----CCEEEEEECccchhh--h---hhHHH--------HHHcCCC
Confidence 56678999999999987888888877777665 23 289999999998643 1 01111 0111011
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+ ..+||.++.++.+|++.+.+.+.
T Consensus 160 ~~------~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 160 EP------YPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp SE------EECCTTTCTTHHHHHHHHHTTGG
T ss_pred ce------EEeecccccchHHHHHHHHhhcc
Confidence 12 25688889999999998877654
No 112
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.66 E-value=1.3e-16 Score=131.38 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... . ..+..............+ ..+.+|||||........
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------- 78 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKN-Y-NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK--------- 78 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCE-E-ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCC-C-CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH---------
Confidence 458999999999999999999997654111 1 111111111111122122 468899999965432111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+.++|++++|+|++++.+..+ ..++..+........ |+++|+||+|+... ..+... ....+..
T Consensus 79 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~--~~~~~~-------~~~~~~~ 145 (218)
T 4djt_A 79 --DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA--PIVVCANKIDIKNR--QKISKK-------LVMEVLK 145 (218)
T ss_dssp --HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSS--CEEEEEECTTCC------CCHH-------HHHHHTT
T ss_pred --HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccc--cccCHH-------HHHHHHH
Confidence 112357899999999984433222 234455555544333 89999999998754 111100 0112222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
..+..++ .+||+++.++.++++.+.+.+.....
T Consensus 146 ~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 146 GKNYEYF------EISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TCCCEEE------EEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred HcCCcEE------EEecCCCCCHHHHHHHHHHHHhcccc
Confidence 2233333 46888899999999999998866443
No 113
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.66 E-value=8.9e-17 Score=130.44 Aligned_cols=167 Identities=16% Similarity=0.081 Sum_probs=92.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.........+.+ ++ ..+.+|||||.... ...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-------~~~--- 93 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFREN--ISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERF-------RSI--- 93 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEE-TTEEEEEEEEECTTCTTC-------HHH---
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCCccceeEEEEEEE-CCEEEEEEEEECCCCcch-------hhh---
Confidence 458999999999999999999997653111 1111111222222333 33 45789999996542 111
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+... ...+. ...........+..
T Consensus 94 -~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~~~~-~~~v~~~~~~~~~~ 167 (199)
T 2p5s_A 94 -AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDT--AATEG-QKCVPGHFGEKLAM 167 (199)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHTT-CCCCCHHHHHHHHH
T ss_pred -HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--ccccc-ccccCHHHHHHHHH
Confidence 1122346799999999984333222 23444444433222 289999999998632 10000 00000001222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..++ .+||+++.++.++++.+.+.+.
T Consensus 168 ~~~~~~~------~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 TYGALFC------ETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHTCEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCeEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 3344333 4688889999999998877653
No 114
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.66 E-value=6.5e-16 Score=126.30 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE--eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
...+|+|+|..|+|||||++.+++... ......|.... ...+.. ++ ..+.||||+|.....
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f----~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~---------- 76 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF----DNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFR---------- 76 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC----C----------CEEEEEEC-SSCEEEEEEECCSCTTTCG----------
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC----CCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhhh----------
Confidence 457999999999999999999986543 11122232222 222223 33 356799999965421
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
.....++.+++++++|+|++++-+-.. ..++..+....+..+ |++||.||+|+.....-..++ ...+
T Consensus 77 -~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r~V~~~e---------~~~~ 144 (216)
T 4dkx_A 77 -SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERK 144 (216)
T ss_dssp -GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred -hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcCcccHHH---------HhhH
Confidence 122334578999999999984333222 345566665555554 899999999986531011221 2223
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
....+..|+ .+||+++.++.++++.|.+.+
T Consensus 145 a~~~~~~~~------e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 145 AKELNVMFI------ETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp HHHHTCEEE------EEBTTTTBSHHHHHHHHHHHC
T ss_pred HHHhCCeeE------EEeCCCCcCHHHHHHHHHHHH
Confidence 333344443 578999999999999887665
No 115
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.66 E-value=4.3e-15 Score=120.15 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=94.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCCCCCCcHHHHH
Q 018636 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGK 91 (352)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~~~~~~~~~ 91 (352)
.+.....+|+|+|..|+|||||+|.+++..... ++.+. ..........+ .....+.+|||||........+..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-- 89 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFL-ESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY-- 89 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGC-CCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH--
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeee-ccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc--
Confidence 344566899999999999999999999864311 11111 11111111112 134678999999976532211100
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHH---HHhcccCChh
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE---DFLGHECPKP 168 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~---~~l~~~~~~~ 168 (352)
...+.++|++++|+|+++++......+..++..........|+++|.||+|+... .... ..+.. ..
T Consensus 90 ------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~---~~ 158 (196)
T 3llu_A 90 ------EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQ---RA 158 (196)
T ss_dssp ------HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHH---HH
T ss_pred ------ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHH---HH
Confidence 1223478999999999965434444444555544211112399999999998764 2111 11111 00
Q ss_pred HHHHHH----hcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 169 LKEILQ----LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 169 ~~~~~~----~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
...+.. ..+..++ .+||++ .++.++++.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~------e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 159 NDDLADAGLEKLHLSFY------LTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHTTCTTSCEEEE------EECTTS-THHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCcceE------EEEech-hhHHHHHHHHHHH
Confidence 122222 1122222 568888 9999999887654
No 116
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.65 E-value=1.9e-15 Score=124.32 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=95.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee--EeEEEEeeC-----------CceEEEEeCCCCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKD-----------GQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~-----------~~~~~lvDtpG~~~~~~ 84 (352)
...+|+|+|..|+|||||+|.|++... ......|... ....+.+.. ...+.||||||.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~----- 94 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF----NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ----- 94 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC----CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC----CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc-----
Confidence 347999999999999999999997654 1111112221 122223322 356899999992
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc--ccceEEEEEeCCCCCCcchhcH-HHHh
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTL-EDFL 161 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ilv~nk~D~~~~~~~~l-~~~l 161 (352)
..+.......+..+|++++|+|+++..+... ...++..+.... ...|+++|+||+|+... ..+ .+.
T Consensus 95 ------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~~~- 163 (217)
T 2f7s_A 95 ------ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNERQ- 163 (217)
T ss_dssp ------HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCHHH-
T ss_pred ------HhHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccc--cccCHHH-
Confidence 3333334445578999999999983222111 122333322111 22389999999998653 111 111
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+....+..++ .+|++++.++.++++.+.+.+.
T Consensus 164 -------~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 164 -------ARELADKYGIPYF------ETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp -------HHHHHHHTTCCEE------EEBTTTTBTHHHHHHHHHHHHH
T ss_pred -------HHHHHHHCCCcEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 2233344444443 4678888999999998877653
No 117
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.65 E-value=5.2e-16 Score=135.21 Aligned_cols=170 Identities=18% Similarity=0.120 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|.+|||||||+|.|++...... .....|.......+.+.++..+.++||||+.+.......+...+.+.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--- 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--- 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH---
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH---
Confidence 689999999999999999997653211 111123333344455534478999999997542211122233333322
Q ss_pred cCCccEEEEEEecCC---CCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 101 KDGIHAFLVVFSVTN---RFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~---~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..++++++|+|+++ +-+..+. .++..+..........|+++|+||+|+... .. . +..+...+
T Consensus 235 -~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e---~--------~~~l~~~l 300 (342)
T 1lnz_A 235 -ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AE---N--------LEAFKEKL 300 (342)
T ss_dssp -HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HH---H--------HHHHHHHC
T ss_pred -HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HH---H--------HHHHHHHh
Confidence 35799999999983 2222332 334444443211123499999999998754 21 1 12222332
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~~~ 213 (352)
... .....+||.++.++.+|++.|.+.+.....
T Consensus 301 ~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 301 TDD----YPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred hcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 221 234567899999999999999999876443
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.65 E-value=1.8e-15 Score=121.69 Aligned_cols=169 Identities=17% Similarity=0.109 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|.+|+|||||+|.|++... .....+ +.+.... .+.+ . .+.++||||+.+....+....+.+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~-~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRP-GVTRKII--EIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSST-TCTTSCE--EEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCC-CccceeE--EEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 5899999999999999999998763 222222 2232222 2222 2 678999999876544333222233222221
Q ss_pred c----cCCccEEEEEEecCCCCCHHHHHHH---------HHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCC
Q 018636 100 A----KDGIHAFLVVFSVTNRFSQEEETAV---------HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (352)
Q Consensus 100 ~----~~~~~~~l~v~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~ 166 (352)
. ...++++++|.+.. .+......+. ..+....... .|+++|+||+|+... . .+..
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~--~~~~----- 142 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN--V--QEVI----- 142 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC--H--HHHH-----
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc--H--HHHH-----
Confidence 1 34566777777765 2211101111 1112111112 289999999999865 2 1111
Q ss_pred hhHHHHHHhcCCcEEE-EcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 167 KPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+....+..+.. .....++||+++.++.++++.+.+.+..
T Consensus 143 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 143 ---NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp ---HHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 2222222221100 0011257888999999999999887755
No 119
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1e-15 Score=126.40 Aligned_cols=162 Identities=19% Similarity=0.126 Sum_probs=95.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||......
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 77 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD--SKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRA----------- 77 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhh-----------
Confidence 447999999999999999999998764111 1112222222333334 44 4778999999654321
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
.....+..+|++++|+|++++.+..+ ..++..+....... .|++||+||+|+........++ ...+..
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 146 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTEE---------SKTFAQ 146 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHHH---------HHHHHH
Confidence 12334578999999999984333222 23444444433222 3899999999987431011111 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+..++ .+||.++.++.++++.+.+.+..
T Consensus 147 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 147 ENQLLFT------ETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HTTCEEE------ECCCC-CCCHHHHHHHHHHHHTT
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3343333 46788899999999998877643
No 120
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.65 E-value=1.3e-15 Score=123.24 Aligned_cols=164 Identities=10% Similarity=0.055 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC------CCcceeeEeEEE---Eee-CCceEEEEeCCCCCCCCCCcH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTKTCEMKTT---VLK-DGQVVNVIDTPGLFDLSAGSE 87 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~------~~~t~~~~~~~~---~~~-~~~~~~lvDtpG~~~~~~~~~ 87 (352)
...+|+|+|.+|+|||||+|.|.|.......+.. ...|........ ... ....+.+|||||.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 4579999999999999999999876542111100 111222211111 110 13367899999965421
Q ss_pred HHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhh----cccccceEEEEEeCCCCCCcchhcHHHHhcc
Q 018636 88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
......+.++|++++|+|++++.+......+..+...+ ......|+++|.||+|+... ...++
T Consensus 89 -------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~---- 155 (198)
T 3t1o_A 89 -------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM---- 155 (198)
T ss_dssp -------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH----
T ss_pred -------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH----
Confidence 11222456899999999998433333333333332221 11122399999999998754 22222
Q ss_pred cCChhHHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 164 ECPKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...++...+. .++ .+||+++.++.++++.+.+.+.
T Consensus 156 -----~~~~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 156 -----VRAVVDPEGKFPVL------EAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp -----HHHHHCTTCCSCEE------ECBGGGTBTHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcCCceEE------EEecCCCcCHHHHHHHHHHHHH
Confidence 2223333333 333 5788999999999998877664
No 121
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.65 E-value=3.6e-15 Score=119.32 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++... ......|..... ..+.+. ....+.+|||||..... .
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 70 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF----PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------N 70 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT-----------T
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC----CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 458999999999999999999997654 111112222111 122221 13467899999964321 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc---ccCC-hhH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG---HECP-KPL 169 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~---~~~~-~~~ 169 (352)
.....+.++|++++|+|++++.+-.. ..++..+..... . .|+++|.||+|+.... ..+.+... .... ...
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 146 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG 146 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHH
Confidence 12335578999999999984333222 234444544332 2 3999999999987431 11111110 0000 112
Q ss_pred HHHHHhcCC-cEEEEcCCCccccc-chHHHHHHHHHHHHHH
Q 018636 170 KEILQLCDN-RCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (352)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~sa~-~~~~~~~L~~~i~~~~ 208 (352)
..+....+. .++ .+||+ ++.++.++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~------e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 147 ANMAKQIGAATYI------ECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHTCSEEE------ECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEE------EeeecCCCcCHHHHHHHHHHHH
Confidence 334434342 333 56887 6899999999887764
No 122
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.64 E-value=4.7e-15 Score=128.16 Aligned_cols=174 Identities=13% Similarity=0.134 Sum_probs=96.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccC---CCCCc----------------------ceee-------------
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA---GSSGV----------------------TKTC------------- 58 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~---~~~~~----------------------t~~~------------- 58 (352)
....+|+|+|.+|+|||||+|+|+|....+... +..+. ++..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999987532111 00000 0000
Q ss_pred -----------EeEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhcccCCccEEE-EEEecCCCCCHHHH-H
Q 018636 59 -----------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEE-T 123 (352)
Q Consensus 59 -----------~~~~~~~~~~~~~~lvDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~v~~~~~~~~~~~~-~ 123 (352)
....+..++...+.+|||||+..... ....+...+......++...+.++ +|+|++..++..+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00011111246889999999976431 011112233333333444566554 78898766655543 2
Q ss_pred HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHH
Q 018636 124 AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSL 203 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~ 203 (352)
++..+.. .+ .|+++|+||+|+.... ....+.+.. .+..+...+. .....||.++.++.+|++.
T Consensus 184 ~~~~~~~-~~----~~~i~V~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~---~v~~~SA~~~~gi~~l~~~ 246 (299)
T 2aka_B 184 IAKEVDP-QG----QRTIGVITKLDLMDEG-TDARDVLEN--------KLLPLRRGYI---GVVNRSQKDIDGKKDITAA 246 (299)
T ss_dssp HHHHHCT-TC----SSEEEEEECGGGSCTT-CCCHHHHTT--------CSSCCTTCEE---ECCCCCCBCTTSCBCHHHH
T ss_pred HHHHhCC-CC----CeEEEEEEccccCCCC-chHHHHHhC--------CcCcCCCCcE---EEECCChhhccccccHHHH
Confidence 3333322 12 3899999999997541 112222221 0000111122 3456799999999999988
Q ss_pred HHHH
Q 018636 204 VNSV 207 (352)
Q Consensus 204 i~~~ 207 (352)
+...
T Consensus 247 l~~~ 250 (299)
T 2aka_B 247 LAAE 250 (299)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 123
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.64 E-value=1.8e-15 Score=119.19 Aligned_cols=162 Identities=22% Similarity=0.151 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
.+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||...... .+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------~~~--- 69 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHA--HEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-------WLQ--- 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccc--ccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-------hhh---
Confidence 6899999999999999999987653111 1111222222233333 43 4567999999765211 011
Q ss_pred hcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
...+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+........++ ...+....
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 139 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------GRHLAGTL 139 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHH---------HHHHHHHc
Confidence 111235799999999984222111 223333333222 1123999999999987431111111 22233444
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+..++ .+||+++.++.++++.+.+.+..
T Consensus 140 ~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 140 SCKHI------ETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEE------EecCccCCCHHHHHHHHHHHHHh
Confidence 44443 56888899999999998876643
No 124
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.64 E-value=5.2e-16 Score=123.41 Aligned_cols=165 Identities=16% Similarity=0.040 Sum_probs=96.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+.+ ...+.+|||||.......
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~---------- 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQ--YKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM---------- 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHH--HHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCC--CCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch----------
Confidence 458999999999999999999997653111 001111222233344422 257899999996543211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+.++|++++|+|++++.+-.. ..++..+..........| +++|+||+|+........+ . ...+.
T Consensus 73 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~-~--------~~~~~ 142 (178)
T 2hxs_A 73 -LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE-K--------HLRFC 142 (178)
T ss_dssp -HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHH-H--------HHHHH
T ss_pred -hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHH-H--------HHHHH
Confidence 1122458899999999984332222 234444444321100114 7899999998643101111 1 22233
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+..++ .+||.++.++.++++.+.+.+..
T Consensus 143 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 143 QENGFSSH------FVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHTCEEE------EECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHcCCcEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 33333333 46788899999999999887643
No 125
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.64 E-value=3.5e-16 Score=124.91 Aligned_cols=165 Identities=18% Similarity=0.106 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||++.+++... . .....|+...+. .+... ....+.+|||||..... .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 71 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-P---TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------R 71 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C-------------CBCCCC-------CEEECCCC-CTTT-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C---CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 348999999999999999999987653 1 111112111111 11110 12345699999965432 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHH-h--cccCChhHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF-L--GHECPKPLK 170 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~-l--~~~~~~~~~ 170 (352)
.....+.++|++++|+|++++.+-... .++..+..... . .|+++|+||+|+... ...... . .........
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhhcC--cccccccccCCCCCHHHHH
Confidence 223345789999999999843332222 34555554433 2 389999999998654 221000 0 000000122
Q ss_pred HHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+....+. .++ .+||+++.++.++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 147 ELKKLIGAPAYI------ECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 33333343 333 568888999999999887765
No 126
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.64 E-value=4.1e-15 Score=121.08 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.|++... ......|..... ..+.+. ....+.+|||||.....
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------- 90 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCF----PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD----------- 90 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT-----------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC----CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhh-----------
Confidence 4458999999999999999999998654 111112222211 122221 13467899999964321
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc---cCC-hh
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KP 168 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~---~~~-~~ 168 (352)
......+.++|++++|+|++++.+-.. ..++..+..... . .|+++|.||+|+.... ..+.++... ... ..
T Consensus 91 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 166 (205)
T 1gwn_A 91 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 166 (205)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccch-hhhhhhcccccCCCCHHH
Confidence 112335578999999999984333222 234444544332 2 3899999999987431 111111100 000 11
Q ss_pred HHHHHHhcCC-cEEEEcCCCccccc-chHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~-~~~~~~~L~~~i~~~~ 208 (352)
...+....+. .++ .+||+ ++.++.++++.+.+.+
T Consensus 167 ~~~~~~~~~~~~~~------e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 167 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEE------EeeeccCCcCHHHHHHHHHHHH
Confidence 2334434342 333 46787 6889999999887754
No 127
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.64 E-value=2.2e-15 Score=119.84 Aligned_cols=155 Identities=17% Similarity=0.106 Sum_probs=91.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE-eEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.+++.......+ |.... ...+.+ ++ ..+.+|||||... .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~-----t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~--------~---- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEK-----TESEQYKKEMLV-DGQTHLVLIREEAGAPD--------A---- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSS-----CSSSEEEEEEEE-TTEEEEEEEEECSSSCC--------H----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCC-----CcceeEEEEEEE-CCEEEEEEEEECCCCch--------h----
Confidence 45899999999999999999999765422111 21111 222233 43 3568899999653 0
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcc-cccceEEEEEeCCCCCCc-chhcHHHHhcccCChhHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~ 171 (352)
..+.++|++++|+|++++-+-... .++.++...... ....|+++|.||+|+... ......+. ...
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~--------~~~ 135 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR--------ARA 135 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH--------HHH
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH--------HHH
Confidence 122468999999999844333322 233344443221 012389999999998421 00111111 222
Q ss_pred HHHhcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 172 ILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 172 ~~~~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+....+ ..++ .+||+++.++.++++.+.+.+
T Consensus 136 ~~~~~~~~~~~------~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 136 LXADMKRCSYY------ETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp HHHHHSSEEEE------EEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHhhcCCeEE------EEeccccCCHHHHHHHHHHHH
Confidence 322222 2222 568888999999999887665
No 128
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.63 E-value=1e-14 Score=128.41 Aligned_cols=171 Identities=14% Similarity=0.069 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|.+|+|||||+|.|+|...... .....|.+.....+.+ ++..+.++||||+.... .. .+.+.+...+ ..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l-p~-~lve~f~~tl-~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI-PP-QIVDAFFVTL-SE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSC-CG-GGHHHHHHHH-HG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhcC-CH-HHHHHHHHHH-HH
Confidence 499999999999999999998864211 1112233333344555 67888999999985421 11 1223333332 24
Q ss_pred cCCccEEEEEEecCCCC--CHHHHH-HHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc-
Q 018636 101 KDGIHAFLVVFSVTNRF--SQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~--~~~~~~-~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 176 (352)
+..+|++++|+|+++.. ...... +...+..+.... .|+++|.||+|..+. . ....+.. ...+....
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~l~ 324 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKING--D-LYKKLDL-----VEKLSKELY 324 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHHHC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHHhc
Confidence 56789999999987433 111122 223333321122 389999999998764 2 1111111 11122222
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
..... ..++|+.++.++.+|++.|.+.+...
T Consensus 325 ~~~~~----~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 325 SPIFD----VIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp SCEEE----EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCc----EEEEECCCCcCHHHHHHHHHHHhccc
Confidence 11111 13678899999999999999887653
No 129
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=1e-14 Score=119.29 Aligned_cols=173 Identities=13% Similarity=0.162 Sum_probs=96.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~--~~~~~~ 93 (352)
..+.+|+|+|++|||||||+|.|+|... ....+..|. +.... .+.+ ++ .+.++||||+........ ......
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~-~~~~~--~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGR-TQLIN--LFEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEE--EEEE-ET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcc-ceeeE--EEEe-cC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 4568999999999999999999998762 111133222 11111 1222 22 677999999865321111 111112
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
..........+++++++++++...+..+.....++.. .+. |++++.||+|..+. ......+.. ...++
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~~----~~~~v~nK~D~~s~--~~~~~~~~~-----~~~~~ 166 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SNI----AVLVLLTKADKLAS--GARKAQLNM-----VREAV 166 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEecccCCCc--hhHHHHHHH-----HHHHH
Confidence 2222222357899999999986666555444444432 232 78899999998764 222211222 33344
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
........ ..++|+.++.++.++++.+.+.+..
T Consensus 167 ~~~~~~~~----~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 167 LAFNGDVQ----VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGCSCEE----EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HhcCCCCc----eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 33221111 2356888899999999998887644
No 130
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.63 E-value=4.8e-15 Score=140.25 Aligned_cols=166 Identities=15% Similarity=0.201 Sum_probs=102.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCccee-----------------------------------------
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT----------------------------------------- 57 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~----------------------------------------- 57 (352)
-.+|+|+|..++|||||+|+|+|...++.+.. .+|..
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g--~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS--CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCc--cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 36999999999999999999999876544322 11210
Q ss_pred ----------eEeEEEEeeCCceEEEEeCCCCCCCCCC--c----HHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH
Q 018636 58 ----------CEMKTTVLKDGQVVNVIDTPGLFDLSAG--S----EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE 121 (352)
Q Consensus 58 ----------~~~~~~~~~~~~~~~lvDtpG~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~ 121 (352)
.....+..++...++||||||+...... . ..+...+..++. ..+|++++|+|++..+...+
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~---~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT---KENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT---STTEEEEEEEETTSCSSSCH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh---cCCcEEEEEEcCCCCcchhH
Confidence 0011122334557899999999874321 1 223333333333 57899999999986666666
Q ss_pred H-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHH
Q 018636 122 E-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (352)
Q Consensus 122 ~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L 200 (352)
. ..+..+... +. |+++|+||+|..... ....+.+.. .....+ .-|....+.||.++.++.+|
T Consensus 206 ~l~ll~~L~~~-g~----pvIlVlNKiDlv~~~-~~~~~il~~----------~~~~l~-lg~~~VV~iSA~~G~GvdeL 268 (772)
T 3zvr_A 206 ALKIAKEVDPQ-GQ----RTIGVITKLDLMDEG-TDARDVLEN----------KLLPLR-RGYIGVVNRSQKDIDGKKDI 268 (772)
T ss_dssp HHHHHHHHCTT-CS----SEEEEEECTTSSCTT-CCSHHHHTT----------CSSCCS-SCEEECCCCCCEESSSSEEH
T ss_pred HHHHHHHHHhc-CC----CEEEEEeCcccCCcc-hhhHHHHHH----------Hhhhhh-ccCCceEEecccccccchhH
Confidence 5 455544432 32 899999999998651 111111111 000000 11334667899999999999
Q ss_pred HHHHHH
Q 018636 201 LSLVNS 206 (352)
Q Consensus 201 ~~~i~~ 206 (352)
++.+.+
T Consensus 269 ~eaI~~ 274 (772)
T 3zvr_A 269 TAALAA 274 (772)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999887
No 131
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=6.1e-15 Score=119.24 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|.+|+|||||+|.|++..... ....|....+. .+.+ ++ ..+.+|||||... ....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----~~~~--- 92 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW----EYDPTLESTYRHQATI-DDEVVSMEILDTAGQED-----TIQR--- 92 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS----CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCC-----CHHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCCCCceEEEEEEE-CCEEEEEEEEECCCCCc-----ccch---
Confidence 456899999999999999999999775411 11112222221 1223 33 4678999999765 1111
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
. ..+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+........++ ...+
T Consensus 93 ~----~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~ 158 (196)
T 2atv_A 93 E----GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE---------GEKL 158 (196)
T ss_dssp H----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHH
T ss_pred h----hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHH---------HHHH
Confidence 1 12235799999999983222222 233444444322 1123899999999987531011111 1222
Q ss_pred HHhcCCcEEEEcCCCcccccchH-HHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~~~ 209 (352)
....+..++ .+|+.++. ++.++++.+.+.+.
T Consensus 159 ~~~~~~~~~------~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 159 ATELACAFY------ECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp HHHHTSEEE------ECCTTTCTTCHHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EECCCcCCcCHHHHHHHHHHHHH
Confidence 233333333 46778888 99999998877653
No 132
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.63 E-value=3.9e-15 Score=134.78 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=101.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCccccc-----------------------------CCCCCcceeeEeEEEEe
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVL 65 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~ 65 (352)
+.....+|+++|+.|+|||||+|.|++....-.. ....++|.......+.+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3345689999999999999999999654210000 00123455555555555
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCC-------HHHHHHHHHHHHhhcccccc
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFD 138 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~ 138 (352)
.+..+++|||||.. .+...+...+..+|++++|+|++.... ...+..+..+.. ++..
T Consensus 93 -~~~~~~iiDTPGh~-----------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v~--- 156 (439)
T 3j2k_7 93 -EKKHFTILDAPGHK-----------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVK--- 156 (439)
T ss_pred -CCeEEEEEECCChH-----------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCCC---
Confidence 67899999999943 233344444568999999999985443 344555554444 3431
Q ss_pred eEEEEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHH
Q 018636 139 YMIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS 202 (352)
Q Consensus 139 ~~ilv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~ 202 (352)
++++++||+|+... ....+++.... +..++...+-.....-...+.||.++.++.++.+
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 48999999998643 11223333333 4445444332100001124678889999988554
No 133
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=121.27 Aligned_cols=169 Identities=21% Similarity=0.147 Sum_probs=94.9
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHH
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEF 88 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~ 88 (352)
...+.....+|+|+|.+|+|||||+|.|+|... +...+. .+.......+.+ ++. .+.+|||+|.....
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~----- 86 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE---NPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG----- 86 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT---SCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG-----
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC---cccceEEEEEEE-CCEEEEEEEEecCCCccch-----
Confidence 333445668999999999999999999986532 111111 122222222333 443 56788999965421
Q ss_pred HHHHHHHHHhcccCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCCh
Q 018636 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK 167 (352)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~ 167 (352)
..+.. ..+..+|++++|+|++++-+-. ...++..+..... ....|+++|.||+|+........++
T Consensus 87 --~~~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~-------- 152 (195)
T 3cbq_A 87 --GWLRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE-------- 152 (195)
T ss_dssp --HHHHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHH--------
T ss_pred --hhhHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHH--------
Confidence 11111 1234679999999998432211 1233333433221 1123899999999987541111221
Q ss_pred hHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
...+....+..++ .+||+++.++.++++.+.+.+..
T Consensus 153 -~~~~a~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 153 -GRHLAGTLSCKHI------ETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp -HHHHHHHTTCEEE------EEBTTTTBSHHHHHHHHHHHHHT
T ss_pred -HHHHHHHhCCEEE------EEcCCCCCCHHHHHHHHHHHHHH
Confidence 2223333343333 56888899999999998877654
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.62 E-value=1.2e-15 Score=138.71 Aligned_cols=158 Identities=21% Similarity=0.272 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCC-CCCCCcHHHH-HHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVG-KEIVKCL 97 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~-~~~~~~~~~~-~~~~~~~ 97 (352)
.+|+|+|.+|+|||||+|.|++.......... +.|.......+.+ ++..+.+|||||+. ......+... ...
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~-gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~---- 317 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIP-GTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERT---- 317 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSS-CCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHH----
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCC-CeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHH----
Confidence 79999999999999999999987532111111 2233443444455 78899999999987 5432111100 111
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
...+..+|++++|+|+++..+..+...++.+ . . .|+++|+||+|+... ...++ +..... ..
T Consensus 318 ~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~-~--~piivV~NK~DL~~~--~~~~~---------~~~~~~-~~ 378 (482)
T 1xzp_A 318 LQEIEKADIVLFVLDASSPLDEEDRKILERI----K-N--KRYLVVINKVDVVEK--INEEE---------IKNKLG-TD 378 (482)
T ss_dssp HHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----T-T--SSEEEEEEECSSCCC--CCHHH---------HHHHHT-CS
T ss_pred HHHhhcccEEEEEecCCCCCCHHHHHHHHHh----c-C--CCEEEEEECcccccc--cCHHH---------HHHHhc-CC
Confidence 1123478999999999867776665554433 2 1 289999999998743 22221 222211 11
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+ ..+||+++.++++|++.|.+.+
T Consensus 379 ~~~------i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 379 RHM------VKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp TTE------EEEEGGGTCCHHHHHHHHHHHT
T ss_pred CcE------EEEECCCCCCHHHHHHHHHHHH
Confidence 122 3578999999999999988864
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.62 E-value=8.4e-16 Score=137.40 Aligned_cols=167 Identities=19% Similarity=0.144 Sum_probs=105.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
+.....+|+|+|..|+|||||+|.|++......... .+.|.......+.+.....+.+|||||+.+............
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~-~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~- 107 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDY-AGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA- 107 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH-
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCC-CCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH-
Confidence 344568999999999999999999998765222222 223444445555553334899999999987543221111222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
...+..+|++++|+|+ .....+..++..+... +. |+++|+||+|+... ...+ . ...+..
T Consensus 108 ---~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~~----piIvV~NK~Dl~~~--~~~~-~--------~~~l~~ 166 (423)
T 3qq5_A 108 ---RRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-EI----PFVVVVNKIDVLGE--KAEE-L--------KGLYES 166 (423)
T ss_dssp ---HHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-TC----CEEEECCCCTTTTC--CCTH-H--------HHHSSC
T ss_pred ---HHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-CC----CEEEEEeCcCCCCc--cHHH-H--------HHHHHH
Confidence 2234578999999998 5566777787877765 32 89999999999866 2211 1 111111
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..+. ....+|++++.++.+|++.+.+.+..
T Consensus 167 ~~g~------~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 167 RYEA------KVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CTTC------CCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HcCC------CEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 1121 34578999999999999999998844
No 136
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.62 E-value=8.9e-16 Score=142.04 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=99.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++... .. ...|.......+.+ .+..+.+|||||..... ...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~----~~-~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~~ 383 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS----VT-TIPTVGFNVETVTY-KNVKFNVWDVGGQDKIR-----------PLW 383 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC----CC-CCCCSSEEEEEEES-SSCEEEEEEECCCGGGS-----------GGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC----CC-cCCccceeEEEEEe-CCEEEEEEECCCcHHHH-----------HHH
Confidence 457999999999999999999998764 11 12244444444555 67889999999954321 123
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
..++..+|++++|+|++++-+-.+. .++..+..... ....|++||+||+|+... ...++.... +. ....
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~~~~-----~~--~~~~ 453 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDA--MKPHEIQEK-----LG--LTRI 453 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSSSC--CCHHHHHHH-----TT--CTTC
T ss_pred HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCCcC--CCHHHHHHH-----hc--hhhh
Confidence 4456789999999999844332222 12222221111 112399999999999755 222222111 00 0000
Q ss_pred CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 177 ~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
..... ....+||.++.++.+|++.|.+.+..
T Consensus 454 ~~~~~---~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 454 RDRNW---YVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp CSSCE---EEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred hcCCe---EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 11111 12357899999999999999887654
No 137
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.62 E-value=3.8e-16 Score=128.88 Aligned_cols=161 Identities=16% Similarity=0.053 Sum_probs=95.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
....+|+|+|.+|+|||||+|.++... .....++.+ .+.. ...+... .+..+.+|||||.......
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~-~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------- 80 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-VEVH--PLVFHTNRGPIKFNVWDTAGQEKFGGL--------- 80 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT-EEEE--EEEEEETTEEEEEEEEEECSGGGTSCC---------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc-eeEE--EEEEEECCEEEEEEEEeCCChHHHhHH---------
Confidence 455899999999999999999955332 211112111 1221 1122221 2356789999995432211
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
....+.++|++++|+|++++.+... ..++..+...+. . .|+++|+||+|+... ....+ ... +.
T Consensus 81 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~~-~~~--------~~ 144 (221)
T 3gj0_A 81 --RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR--KVKAK-SIV--------FH 144 (221)
T ss_dssp --CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSC--SSCGG-GCC--------HH
T ss_pred --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCccccc--cccHH-HHH--------HH
Confidence 1123357899999999984333222 234444444432 2 289999999998755 22111 111 22
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
...+..++ .+|++++.++.++++.+.+.+...
T Consensus 145 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 145 RKKNLQYY------DISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp HHHTCEEE------ECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHhC
Confidence 22233343 468889999999999998887653
No 138
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.62 E-value=3.4e-15 Score=119.49 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC-cccccCCCCCcceeeEeEEEE--e----eCCceEEEEeCCCCCCCCCCcHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTV--L----KDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~--~----~~~~~~~lvDtpG~~~~~~~~~~~~~~ 92 (352)
.+|+|+|++|||||||+|.|++.. .+.. . ...|....+.... + .....+.+|||+|.. .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~-~--~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG-M--QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE-----------E 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHH-----------H
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC-C--cceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------H
Confidence 689999999999999999999863 2111 1 1112222221111 1 124578899999942 2
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCH--HHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQ--EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (352)
+.......+.+.+++++|+|++++.+. .-..++..+..... . .|+++|.||+|+... ..+.+.... ...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~----~~~ 139 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVSDE--KQRKACMSK----ITK 139 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGCCH--HHHHHHHHH----HHH
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcccc--hhhHHHHHH----HHH
Confidence 222222233467899999998843221 11233343333322 2 289999999998754 333221111 011
Q ss_pred HHHHhcCCcEEEEcCCCcccccchH-HHHHHHHHHHHHHHh
Q 018636 171 EILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ 210 (352)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~sa~~~~-~~~~L~~~i~~~~~~ 210 (352)
.+....+.... .....+||+++. ++.+|++.|.+.+..
T Consensus 140 ~~~~~~~~~~~--~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 140 ELLNKRGFPAI--RDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HTTTCTTSCEE--EEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcch--hheEEEecccCchhHHHHHHHHHHHHhc
Confidence 12112222200 011246777884 899999988776643
No 139
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.62 E-value=1.6e-14 Score=127.44 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=93.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE---------------------------------------
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--------------------------------------- 59 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--------------------------------------- 59 (352)
..+|+|+|.+|+|||||+|+|+|....+... +.+|....
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~--~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS--GIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCS--SSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCC--CcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 3699999999999999999999987532211 11110000
Q ss_pred ------------eEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHhccc-CCccEEEEEEecCCCCCHHHHHH
Q 018636 60 ------------MKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETA 124 (352)
Q Consensus 60 ------------~~~~~~~~~~~~~lvDtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~ 124 (352)
...+..+++..++||||||+...... ...+.+.+...+..++ ...+++++|++++..+...+..
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~- 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-
Confidence 00111122567999999999764321 1111222333333232 3446677777776555544432
Q ss_pred HHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHH
Q 018636 125 VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLV 204 (352)
Q Consensus 125 l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i 204 (352)
.++..+... ..|+++|+||+|+.... ....+.+.. . .. .....++ .....||.++.++.+|++.+
T Consensus 188 -~i~~~~~~~--~~~~i~V~NK~Dl~~~~-~~~~~~~~~-~------~~-~l~~~~~---~v~~~SA~~~~~i~~l~~~l 252 (353)
T 2x2e_A 188 -KVAKEVDPQ--GQRTIGVITKLDLMDEG-TDARDVLEN-K------LL-PLRRGYI---GVVNRSQKDIDGKKDITAAL 252 (353)
T ss_dssp -HHHHHHCTT--CTTEEEEEECGGGSCTT-CCCHHHHTT-C------SS-CCTTCEE---ECCCCCHHHHHTTCCHHHHH
T ss_pred -HHHHHhCcC--CCceEEEeccccccCcc-hhHHHHHhC-C------cc-cccCCce---EEEeCCcccccccccHHHHH
Confidence 233332221 23899999999997541 112222221 0 00 0011222 34567899999999999887
Q ss_pred HH
Q 018636 205 NS 206 (352)
Q Consensus 205 ~~ 206 (352)
.+
T Consensus 253 ~~ 254 (353)
T 2x2e_A 253 AA 254 (353)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 140
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.62 E-value=3.3e-15 Score=122.36 Aligned_cols=166 Identities=19% Similarity=0.124 Sum_probs=97.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||++.+++... . .....|....+ ..+.+ ++ ..+.+|||||......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-P---TDYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-C---SSCCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C---ccCCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 458999999999999999999987653 1 11111221111 12223 33 4778999999765321
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc-ccCChhHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG-HECPKPLKE 171 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~-~~~~~~~~~ 171 (352)
.....+.++|++++|+|++++-+-... .++..+..... . .|++||+||+|+... ........ .........
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE 146 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence 122345789999999999843222222 34455544332 2 389999999998654 22100000 000001223
Q ss_pred HHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+....+. .++ .+||.++.++.++++.+.+.+..
T Consensus 147 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 147 LRKQIGAAAYI------ECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHcCCceEE------EccCCCCCCHHHHHHHHHHHHhh
Confidence 3333343 333 56888899999999998887654
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.62 E-value=2.1e-14 Score=129.17 Aligned_cols=167 Identities=16% Similarity=0.223 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEEEee--------------C--------CceEEEE
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~~~lv 74 (352)
...+|+++|+.++|||||++.|+|....... ....++|....+....+. + ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4489999999999999999999976431110 111223443332221110 1 1578999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
|||| ...+...+......+|++++|+|+++.. .......+..+.. ++. .|+++++||+|+...
T Consensus 87 DtPG-----------h~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~- 150 (408)
T 1s0u_A 87 DSPG-----------HETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE- 150 (408)
T ss_dssp ECSS-----------HHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT-
T ss_pred ECCC-----------HHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH-
Confidence 9999 3344444555556889999999998665 5666666665543 342 279999999999865
Q ss_pred hhcHHHHhcccCChhHHHHHHhcC-CcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
......... +..++.... ..+ ...+.||.++.++.+|++.+...++.
T Consensus 151 -~~~~~~~~~-----i~~~l~~~~~~~~----~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 151 -KQAEENYEQ-----IKEFVKGTIAENA----PIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp -TTTTTHHHH-----HHHHHTTSTTTTC----CEEEC------CHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHH-----HHHHHhhcCCCCC----eEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 322211222 333333211 111 12357889999999999999886643
No 142
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.62 E-value=1.4e-14 Score=130.37 Aligned_cols=168 Identities=13% Similarity=0.183 Sum_probs=104.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-CCCCCcceeeEeEEEEee--------------C--------CceEEEE
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~~~lv 74 (352)
...+|+++|+.++|||||++.|+|....... ....++|....+....+. . ...+++|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4479999999999999999999976421110 111223443333222210 0 1578999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
||||. ..+...+......+|++++|+|+++.. .......+..+..+ +.. |+++++||+|+...
T Consensus 89 DtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~---~iivviNK~Dl~~~- 152 (410)
T 1kk1_A 89 DAPGH-----------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVDK- 152 (410)
T ss_dssp ECSSH-----------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH-
T ss_pred ECCCh-----------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCC---cEEEEEECccCCCH-
Confidence 99993 334444444455789999999998655 56666666655543 422 79999999999865
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
....+.... +..++....... .+..+.||.++.++.+|++.|...++.
T Consensus 153 -~~~~~~~~~-----i~~~l~~~~~~~---~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 153 -EKALENYRQ-----IKEFIEGTVAEN---APIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp -HHHHHHHHH-----HHHHHTTSTTTT---CCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHH-----HHHHHHhcCcCC---CeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 443333333 444443211100 012356888999999999999886653
No 143
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.61 E-value=1.6e-14 Score=124.81 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=78.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH-HHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VKCL 97 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~-~~~~ 97 (352)
..+|+|+|.+|+|||||+|.+++........ ....|.........+.++..+.+|||||.... ...+ ....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~-~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~ 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTR-RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQK 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGG-GCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccc-CcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhHH
Confidence 4799999999999999999998873211111 12234444444444435678899999995321 1111 1222
Q ss_pred hcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
...+.++|++++|+|+++.-+..+. .+..++..+.......|+++|+||+|+...
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 3344689999999999855444443 233334333211112399999999999863
No 144
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.61 E-value=3.1e-15 Score=134.32 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=102.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccccc-------------CCCCCcceeeEeEEEEe----eCCceEEEEeCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-------------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPGLF 80 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~----~~~~~~~lvDtpG~~ 80 (352)
...+|+++|..|+|||||+|+|+|....... ......+.........+ .....+.+|||||..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 4589999999999999999999985431100 00000000000000000 012578899999943
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHH
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~ 159 (352)
+ +.......+..+|++++|+|+++.. .......+..+..+ +.. |+++++||+|+.+. ..+.+
T Consensus 87 ~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~---~iivviNK~Dl~~~--~~~~~ 149 (403)
T 3sjy_A 87 V-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVK---NLIIVQNKVDVVSK--EEALS 149 (403)
T ss_dssp G-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH--HHHHH
T ss_pred H-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCC---CEEEEEECccccch--HHHHH
Confidence 3 2222233345789999999999665 55566666655543 322 89999999999866 55544
Q ss_pred HhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 160 FLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.... +...+....... ....+.||.++.++.+|++.+...+..
T Consensus 150 ~~~~-----i~~~l~~~~~~~---~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 150 QYRQ-----IKQFTKGTWAEN---VPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHH-----HHHHHTTSTTTT---CCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHH-----HHHHHHhhCCCC---CEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 4444 444443322110 012367889999999999999986643
No 145
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.61 E-value=1.3e-14 Score=116.30 Aligned_cols=160 Identities=19% Similarity=0.106 Sum_probs=92.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|..|+|||||+|.+++... ......|+...+ ..... ++ ..+.+|||||...... +
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~ 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF----ISEYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN--------C 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC----CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCC--------T
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchh--------H
Confidence 3458999999999999999999997653 111222322222 12222 33 4567899999754321 1
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcc-cccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (352)
. ..+..+|++++|+|++++-+-.. ..++..+...... ....|+++|.||+|+........++ ...
T Consensus 86 ~----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~ 152 (187)
T 3c5c_A 86 E----RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE---------GVA 152 (187)
T ss_dssp H----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH---------HHH
T ss_pred H----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH---------HHH
Confidence 1 12357899999999983322222 2344444443210 0123899999999986431011111 222
Q ss_pred HHHhcCCcEEEEcCCCcccc-cchHHHHHHHHHHHHHH
Q 018636 172 ILQLCDNRCVLFDNKTKDEA-KGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~sa-~~~~~~~~L~~~i~~~~ 208 (352)
+....+..++ .+|| .++.++.++++.+.+.+
T Consensus 153 ~~~~~~~~~~------e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 153 LAGRFGCLFF------EVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HHHHHTCEEE------ECCSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEE------EEeecCccccHHHHHHHHHHHH
Confidence 3333343333 4677 78899999999887765
No 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.60 E-value=5.5e-17 Score=131.69 Aligned_cols=161 Identities=20% Similarity=0.167 Sum_probs=89.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
...+|+|+|.+|+|||||+|.|++...... ...+.+.......+.+ ++ ..+.+|||||.......
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 98 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI---------- 98 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCH--HHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHH----------
Confidence 347999999999999999999998654111 0111222333333344 44 46889999996543211
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....+..+|++++|+|+++.-+-.. ..++..+....... .|+++|+||+|+... ..+.. . ....+..
T Consensus 99 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~--~~v~~--~-----~~~~~~~ 166 (199)
T 3l0i_B 99 -TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTK--KVVDY--T-----TAKEFAD 166 (199)
T ss_dssp -SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CC--SEEEEC-CCSSCC----CCCCS--C-----C-CHHHH
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCC--CCEEEEEECccCCcc--ccCCH--H-----HHHHHHH
Confidence 2234468899999999984333222 23334443332222 389999999998744 11110 0 0122223
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+.. ...+|++++.++.++++.+.+.+.
T Consensus 167 ~~~~~------~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 167 SLGIP------FLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp TTTCC------BCCCCC---HHHHHHHHHHTTTTT
T ss_pred HcCCe------EEEEECCCCCCHHHHHHHHHHHHH
Confidence 32322 346789999999999998876543
No 147
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.59 E-value=3.3e-15 Score=137.59 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=80.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccc----------------cc----CCCCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFK----------------AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
...+|+|+|++|+|||||+|.|++..... .. ....++|.......+.+ .+..++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 34799999999999999999996211000 00 00012233333444455 68889999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|+.+.. .. ...++..+|++++|+|++...+......+..+... +. |+++++||+|+...
T Consensus 91 G~~df~-------~~----~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~i----PiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFT-------ED----TYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-HT----PIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCC-------HH----HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-TC----CEEEEEECTTSCCS
T ss_pred CchhHH-------HH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEeCCCCccc
Confidence 987642 11 22344578999999999977888877777766543 32 89999999999754
No 148
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.59 E-value=3.2e-14 Score=127.45 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=104.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc------ccc---cC-----CCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKA---SA-----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~------~~~---~~-----~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
..+|+++|+.|+|||||++.|++... +.. .. ...++|.......+.. .+..+.+|||||.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~----- 76 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGH----- 76 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSH-----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCCh-----
Confidence 47999999999999999999987421 000 00 0122344433333333 5688999999993
Q ss_pred CcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHHhcc
Q 018636 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+...+...+..+|++++|+|+++.........+..+.. .+- | +++++||+|+... ...++.....
T Consensus 77 ------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~v----p~iivviNK~Dl~~~-~~~~~~~~~~ 144 (397)
T 1d2e_A 77 ------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGV----EHVVVYVNKADAVQD-SEMVELVELE 144 (397)
T ss_dssp ------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CCEEEEEECGGGCSC-HHHHHHHHHH
T ss_pred ------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC----CeEEEEEECcccCCC-HHHHHHHHHH
Confidence 3344445556678999999999997777777777765554 343 5 6889999999753 1333333233
Q ss_pred cCChhHHHHHHhcCC---cEEEEcCCCcccccchH---------H-HHHHHHHHHHHHH
Q 018636 164 ECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTE---------Q-VRQLLSLVNSVIV 209 (352)
Q Consensus 164 ~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~---------~-~~~L~~~i~~~~~ 209 (352)
+..++...+. .. +..+.||.++. + +.+|++.+...++
T Consensus 145 -----~~~~l~~~~~~~~~~----~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 145 -----IRELLTEFGYKGEET----PIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp -----HHHHHHHTTSCTTTS----CEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHcCCCcccC----cEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 4555554431 11 11246776655 3 8889988887665
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.59 E-value=7.6e-15 Score=134.76 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=95.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc-ccc----------------------------cCCCCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKA----------------------------SAGSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~----------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (352)
...+|+++|..|+|||||+|.|++... +.. .....++|.......+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 457999999999999999999975411 000 000113454444555555 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceEE
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i 141 (352)
..+.||||||..+ +......++..+|++++|+|+++. +.......+..+.. ++.. +++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~---~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---NLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCC---CEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCC---cEE
Confidence 8899999999743 222233345689999999999844 34455555555444 3421 699
Q ss_pred EEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC---cEEEEcCCCcccccchHHHHH
Q 018636 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 142 lv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~~~~~ 199 (352)
+++||+|+.......+++.... +..++...+. ...+ .++||.++.++.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~----i~iSA~~g~gi~e 227 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW----VPISGFSGEGVYK 227 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEE----EECCSSSCTTSSS
T ss_pred EEEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceE----EEEeeecCCCccc
Confidence 9999999876322444444443 5555544332 1211 2567777777764
No 150
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.59 E-value=9.4e-15 Score=132.40 Aligned_cols=159 Identities=12% Similarity=0.104 Sum_probs=98.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc--ccc------------cCC-----------------CCCcceeeEeEEEEe
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKA------------SAG-----------------SSGVTKTCEMKTTVL 65 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~--~~~------------~~~-----------------~~~~t~~~~~~~~~~ 65 (352)
....+|+++|..|+|||||+|.|++... +.. +.. ..++|....+..+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3457999999999999999999986531 000 000 012333333444444
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
.+..+.+|||||..+. ...+. ..+..+|++++|+|+++.........+..+..+ +. .++++++|
T Consensus 102 -~~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~---~~iIvviN 165 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GI---KHIVVAIN 165 (434)
T ss_dssp -SSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CEEEEEEE
T ss_pred -CCceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEE
Confidence 5778999999995431 22222 234689999999999977777777776665543 42 16899999
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcC--CcEEEEcCCCcccccchHHHHH
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
|+|+...+.+.++..... +..++...+ ..... ..+.||+++.++.+
T Consensus 166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~---~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMA---FVPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEE---EEECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCce---EEEEeccCCCCccc
Confidence 999975322334434443 555665555 21111 12567777888776
No 151
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=2.7e-14 Score=127.35 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCC----CCCcceeeEeEEEEe-eC--CceEEEEeCCCCCCCCCCc---HH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAGS---EF 88 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~----~~~~t~~~~~~~~~~-~~--~~~~~lvDtpG~~~~~~~~---~~ 88 (352)
..+|+|+|+||+|||||+|+|+|......+.. ....+.......+.. .. ...++++||+|+....... ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 36899999999999999999999865222110 001122111111111 01 2367899999997642111 11
Q ss_pred HHHH----HHHHH-------hccc--CCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcch
Q 018636 89 VGKE----IVKCL-------GMAK--DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (352)
Q Consensus 89 ~~~~----~~~~~-------~~~~--~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~ 154 (352)
+... +..++ ...+ +.+|+++|++.++ ..++..+..++..+.. . .++|+|+||+|..+.
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~--v~iIlVinK~Dll~~-- 182 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLTP-- 182 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----T--SEEEEEEESTTSSCH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----c--CcEEEEEEcccCccH--
Confidence 1111 11111 1112 3456788888775 5788888666665532 2 289999999999866
Q ss_pred hcHHHHhcccCChhHHHHHHhcCCcEE
Q 018636 155 KTLEDFLGHECPKPLKEILQLCDNRCV 181 (352)
Q Consensus 155 ~~l~~~l~~~~~~~~~~~~~~~~~~~~ 181 (352)
..+..+... +...+...+..++
T Consensus 183 ~ev~~~k~~-----i~~~~~~~~i~~~ 204 (418)
T 2qag_C 183 EECQQFKKQ-----IMKEIQEHKIKIY 204 (418)
T ss_dssp HHHHHHHHH-----HHHHHHHHTCCCC
T ss_pred HHHHHHHHH-----HHHHHHHcCCeEE
Confidence 555554444 4444444444433
No 152
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.58 E-value=2.2e-14 Score=127.05 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE----------------------------------------
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE---------------------------------------- 59 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~---------------------------------------- 59 (352)
.+|+|||.+|||||||+|+|+|...++.+. +.+|....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~--~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS--GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCS--SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCC--CcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 599999999999999999999976533322 22221100
Q ss_pred --------------eEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHH
Q 018636 60 --------------MKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET 123 (352)
Q Consensus 60 --------------~~~~~~~~~~~~~lvDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 123 (352)
...+..+....+++|||||+...... .......+......++.++|++++|++.. ........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHH
Confidence 00111123456899999999875321 12234445555555667899999998775 22222233
Q ss_pred HHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 124 AVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
.+.++..+... ..++++|+||+|+...
T Consensus 192 ~~~l~~~~~~~--~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 192 AIKISREVDPS--GDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHSCTT--CTTEEEEEECGGGCCT
T ss_pred HHHHHHHhccc--CCCEEEEEeCCccCCC
Confidence 44444443222 2289999999999854
No 153
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.57 E-value=1.2e-14 Score=128.36 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+++|+.++|||||++.|+. .++|.......+.+ .+..+++|||||..+. ...+.. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~----------~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~~----~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK----------KGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLIT----A 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE----------EEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHHh----------CCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHHH----H
Confidence 899999999999999999981 12344444444544 5778999999997653 222222 2
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceE-EEEEe-CCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-ilv~n-k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
+..+|++++|+| +..+.......+..+.. ++. |. ++++| |+|+ .. ..++..... +..++...+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i----~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGF----KHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC----CEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC----CeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 357899999999 76677777776666654 343 55 88888 9999 54 444443333 4444433321
Q ss_pred cEEEEcCCCc--ccccc---hHHHHHHHHHHHHHHHh
Q 018636 179 RCVLFDNKTK--DEAKG---TEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 179 ~~~~~~~~~~--~sa~~---~~~~~~L~~~i~~~~~~ 210 (352)
..+ +..+ .||.+ +.++.+|++.+.+.++.
T Consensus 147 ~~~---~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 147 QDW---ECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTC---EEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred Cce---EEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 100 1124 68888 99999999988777643
No 154
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=8.6e-14 Score=113.36 Aligned_cols=163 Identities=19% Similarity=0.175 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
...+|+|+|.+|+|||||+|.++|... +..... +++.......+.+ ++. .+.++||+|... .. .
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~--~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~--------~~--~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE--VLGEDTYERTLMV-DGESATIILLDMWENKG--------EN--E 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCTTTTH--------HH--H
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC--ccceeeEEEEEEE-CCeeeEEEEeecCCCcc--------hh--h
Confidence 347999999999999999999997532 221111 1111222222334 444 456899998432 01 1
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHH
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (352)
.....++..++++++|++++++-+-... .++..+..... ....|++||.||+|+........++ ...+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a 172 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACA 172 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHHHH
Confidence 1223455778999999999843222222 23333332211 1123899999999986431011111 11122
Q ss_pred HhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 174 ~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+..++ .+||+++.++.++++.+.+.+.
T Consensus 173 ~~~~~~~~------e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 173 VVFDCKFI------ETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHHTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 22233333 5688999999999998877653
No 155
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=2.7e-14 Score=125.92 Aligned_cols=134 Identities=21% Similarity=0.281 Sum_probs=68.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-----CCcceeeEeEEEEee-CCc--eEEEEeCCCCCCCCCCc----
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLK-DGQ--VVNVIDTPGLFDLSAGS---- 86 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~~--~~~lvDtpG~~~~~~~~---- 86 (352)
..+|+|+|++|+|||||+|.|++...+..+... ...|.........+. .+. .+++|||||+++.....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 368999999999999999999987664432211 011222222222121 232 67899999996643211
Q ss_pred ---HHHHHHHHHHHhcc---------cCCccEEEEEEec-CCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 87 ---EFVGKEIVKCLGMA---------KDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 87 ---~~~~~~~~~~~~~~---------~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
..+...+..++... ...+|+++|+++. ...+...+..++..+ ...+ |+|+|+||+|....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~--piIlV~NK~Dl~~~- 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKV--NIVPVIAKADTLTL- 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-S--CEEEEEECCSSSCH-
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCC--CEEEEEECCCCCCH-
Confidence 11112222222211 1345788888876 357777766554443 2223 89999999999866
Q ss_pred hhcHHHH
Q 018636 154 EKTLEDF 160 (352)
Q Consensus 154 ~~~l~~~ 160 (352)
..+..+
T Consensus 190 -~ev~~~ 195 (361)
T 2qag_A 190 -KERERL 195 (361)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 555443
No 156
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=3e-14 Score=126.43 Aligned_cols=144 Identities=14% Similarity=0.166 Sum_probs=75.8
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCC-CcceeeEeEEEEeeCC--ceEEEEeCCCCCCCCCCc--
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGS-- 86 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~-- 86 (352)
+....+...+|+|+|+||+|||||+|+|+|........... .......+..+....+ ..++++|++|++......
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~ 114 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDS 114 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchh
Confidence 34443333349999999999999999999985311111110 1111112222222112 267999999998642110
Q ss_pred -HH----HHHHHHHHHhcc---------cCC--ccE-EEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCC
Q 018636 87 -EF----VGKEIVKCLGMA---------KDG--IHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (352)
Q Consensus 87 -~~----~~~~~~~~~~~~---------~~~--~~~-~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~ 149 (352)
.. +...+..++... ... +|+ ++++.|.+.+++..+...++.+. ..+ |+|+|+||+|.
T Consensus 115 ~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~~--~vI~Vi~KtD~ 188 (427)
T 2qag_B 115 YKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SKV--NIIPIIAKADA 188 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SCS--EEEEEESCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hCC--CEEEEEcchhc
Confidence 01 112222222211 112 344 55566766778888866655543 222 99999999999
Q ss_pred CCcchhcHHHHhcc
Q 018636 150 LEDHEKTLEDFLGH 163 (352)
Q Consensus 150 ~~~~~~~l~~~l~~ 163 (352)
++. ..+..+...
T Consensus 189 Lt~--~E~~~l~~~ 200 (427)
T 2qag_B 189 ISK--SELTKFKIK 200 (427)
T ss_dssp SCH--HHHHHHHHH
T ss_pred cch--HHHHHHHHH
Confidence 976 566655554
No 157
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.34 E-value=2.1e-16 Score=128.73 Aligned_cols=165 Identities=16% Similarity=0.054 Sum_probs=92.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~~ 93 (352)
....+|+|+|.+|+|||||++.|++.... .....|+.... ..+.. ++ ..+.+|||||....
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~----------- 91 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY----------- 91 (204)
Confidence 34589999999999999999999865531 11111211111 11122 23 34569999996432
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhccc-----CC
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-----CP 166 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~-----~~ 166 (352)
.......+.++|++++|+|++++.+..+. .++..+..... ..|+++|+||+|+... ....+.+... ..
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~ 166 (204)
T 3th5_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY 166 (204)
Confidence 12222344678999999998844333222 34444444322 2389999999998754 2111111100 00
Q ss_pred hhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHH
Q 018636 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (352)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~ 207 (352)
.....+....+. .....+||+++.++.+|++.+.+.
T Consensus 167 ~~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 167 PQGLAMAKEIGA-----VKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 001111111111 123467899999999999887654
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.56 E-value=1.7e-16 Score=145.57 Aligned_cols=163 Identities=13% Similarity=0.168 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (352)
.+|+|+|+.|+|||||++.|++..... ...+++|.....+.+.+..+..+++|||||..+... ....
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~--~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~~~ 71 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAA--MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MRAR 71 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHH--SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SBBS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccc--ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HHHH
Confidence 689999999999999999998765422 223344554444444443567889999999655321 1223
Q ss_pred ccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc
Q 018636 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (352)
.+..+|++++|+|+++.........+..+... +. |+++++||+|+.......+.+.+.. +......++..
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-~v----PiIVViNKiDl~~~~~~~v~~~l~~-----~~~~~e~~~~~ 141 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDA-HV----PIVLAINKCDKAEADPEKVKKELLA-----YDVVCEDYGGD 141 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-TC----CEEECCBSGGGTTTSCCSSSSHHHH-----TTSCCCCSSSS
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHHHc-CC----cEEEEEecccccccchHHHHHHHHh-----hhhhHHhcCCC
Confidence 45678999999999977888777777666543 32 8999999999875411111111111 00001111121
Q ss_pred EEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 180 ~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+ ...++||.++.++.+|++.+..++.
T Consensus 142 ~----~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 142 V----QAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp E----EECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred c----eEEEEECCCCCCchhHHHHHHHhhh
Confidence 1 2346799999999999999988764
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.56 E-value=3.1e-14 Score=127.94 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC-------ccccc--CC------CCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK-------AFKAS--AG------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~-------~~~~~--~~------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
....+|+++|+.|+|||||++.|++.. .+... .. ..++|.......+.. .+..+.+|||||..+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHH
Confidence 345899999999999999999998731 10000 00 112233333333333 568899999999654
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHH
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDF 160 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~ 160 (352)
. .. .....+..+|++++|+|+++.........+..+... +- | +++++||+|+... ...++..
T Consensus 88 f-------~~----~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i----p~iivviNK~Dl~~~-~~~~~~~ 150 (405)
T 2c78_A 88 Y-------IK----NMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFMNKVDMVDD-PELLDLV 150 (405)
T ss_dssp G-------HH----HHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCCC-HHHHHHH
T ss_pred H-------HH----HHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEECccccCc-HHHHHHH
Confidence 2 12 222334688999999999877777777777666543 33 6 8899999999753 1233333
Q ss_pred hcccCChhHHHHHHhcCC---cEEEEcCCCcccccchHH------------------HHHHHHHHHHHHH
Q 018636 161 LGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQ------------------VRQLLSLVNSVIV 209 (352)
Q Consensus 161 l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~~------------------~~~L~~~i~~~~~ 209 (352)
... +..++...+. .. +..+.||.++.+ +.+|++.+...++
T Consensus 151 ~~~-----~~~~l~~~~~~~~~~----~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 151 EME-----VRDLLNQYEFPGDEV----PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHH-----HHHHHHHTTSCTTTS----CEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHH-----HHHHHHHhcccccCC----CEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 333 4455554431 11 112567777776 6777777777654
No 160
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.55 E-value=6.5e-14 Score=124.80 Aligned_cols=164 Identities=15% Similarity=0.172 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCC-cceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..|+|+|.||||||||+|+|++..... .... .|.......+.+.+...++++||||+.........+...+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i---~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~--- 231 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKI---APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR--- 231 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEE---CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH---
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccc---cCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH---
Confidence 468999999999999999999875411 1111 122333334444224788999999986531111111111211
Q ss_pred cccCCccEEEEEEecC-CCC---CHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 99 MAKDGIHAFLVVFSVT-NRF---SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~-~~~---~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....++.++++++++ .++ +.....+..+...+... |.++|+||+|.... ..++. +...+.
T Consensus 232 -~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~----P~ILVlNKlDl~~~--~~~~~---------l~~~l~ 295 (416)
T 1udx_A 232 -HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRR----PSLVALNKVDLLEE--EAVKA---------LADALA 295 (416)
T ss_dssp -HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHS----CEEEEEECCTTSCH--HHHHH---------HHHHHH
T ss_pred -HHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcC----CEEEEEECCChhhH--HHHHH---------HHHHHH
Confidence 124689999999986 111 11222222222222232 89999999998754 33322 222333
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
..+..++ .+||.++.++.+|++.|.+.+...
T Consensus 296 ~~g~~vi------~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 296 REGLAVL------PVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp TTTSCEE------ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred hcCCeEE------EEECCCccCHHHHHHHHHHHHHhc
Confidence 2232332 467888899999999999988753
No 161
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.55 E-value=8.6e-14 Score=112.72 Aligned_cols=160 Identities=15% Similarity=0.144 Sum_probs=92.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|++|||||||+|.|+|..... ....+++.......+.+ ++. .+.++||||.......
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~----------- 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRI----------- 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCC-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhh-----------
Confidence 4799999999999999999999875411 11111222222333444 554 4578999995432111
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..++++++|+|+....+.... .++..+...... ..|+++++||+|+........++ ...+...
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~ 139 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK 139 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcCHHH---------HHHHHHH
Confidence 11123467999999998733332221 233333332211 23899999999986431011111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
.+ +.+++ +|+.++.++.++++.+.+.+.
T Consensus 140 ~~--~~~~d----~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 140 NN--LSFIE----TSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TT--CEEEE----CCTTTCTTHHHHHHHHHHHHH
T ss_pred cC--CeEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 33 22333 578888999999998877653
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3e-14 Score=133.61 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=98.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCccccc------------CC-----------------CCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS------------AG-----------------SSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~------------~~-----------------~~~~t~~~~~~~~~~~~ 67 (352)
....+|+|+|++|+|||||+|.|++....... .. ..++|.......+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 34589999999999999999999876321000 00 023455554555555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
+..+.||||||..+ +.......+..+|++++|+|++.. +.......+..+.. ++. .++
T Consensus 244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i 308 (611)
T 3izq_1 244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL 308 (611)
T ss_dssp SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence 78899999999644 334445566789999999999731 22334444444433 342 269
Q ss_pred EEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCc---EEEEcCCCcccccchHHHHHH
Q 018636 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR---CVLFDNKTKDEAKGTEQVRQL 200 (352)
Q Consensus 141 ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sa~~~~~~~~L 200 (352)
++|+||+|+.......+++.... +..++...+.. .. ..++||.++.++.++
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~----~i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNIN----WVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCE----EEECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCcc----EEeeecccCCCcccc
Confidence 99999999986322344444443 55555444421 11 125677778877755
No 163
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.54 E-value=4.5e-14 Score=123.81 Aligned_cols=164 Identities=16% Similarity=0.102 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEeeCCce--EEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||++.+++... ......|+..... .+.. ++.. +.+|||||..... .
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~ 218 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD-----------R 218 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC----CCSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGT-----------T
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC----CcccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhh-----------H
Confidence 47999999999999999999986653 1112223222222 2223 4554 4599999965421 1
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcc----cC-Chh
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP 168 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~----~~-~~~ 168 (352)
.....+..+|++++|+|++++.+..+. .++..+..... ..|+++|+||+|+... ....+.+.. .. ...
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc--cchhhhccccccccccHHH
Confidence 223355789999999999844333332 34445554433 2399999999998654 211111110 00 011
Q ss_pred HHHHHHhcCC-cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
...+....+. .++ .+||+++.++.++++.+.+.+.
T Consensus 294 ~~~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 294 GLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEE------EecCCCCcCHHHHHHHHHHHHh
Confidence 2334444343 332 5688889999999998877653
No 164
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.6e-14 Score=113.71 Aligned_cols=129 Identities=11% Similarity=0.125 Sum_probs=72.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|+|.+|+|||||+|.|++......... ...++.. .+ .+..+.+|||||........ .. +
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~-~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~---~~----~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAA-----DY-DGSGVTLVDFPGHVKLRYKL---SD----Y 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCH---HH----H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccccc-CCCceee-----ee-cCCeEEEEECCCCchHHHHH---HH----H
Confidence 3457999999999999999999998764111011 1111111 11 45677899999987643221 11 1
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcc-----cccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
+......+|++++|+|++ .-.........++...+.. ....|+++|+||+|+... ..+.+...
T Consensus 112 ~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~ 179 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSKIKD 179 (193)
T ss_dssp HHHHGGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred HHhhcccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHHHHH
Confidence 222224579999999987 1111111122222222110 012389999999999866 44444333
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.50 E-value=8.8e-14 Score=126.00 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=91.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC-cccc-------------c---------------CCCCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-------------S---------------AGSSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (352)
...+|+++|+.|+|||||++.|++.. .+.. + ....++|.......+.+ .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 45899999999999999999998541 1100 0 00123344444444444 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhcccccceEE
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i 141 (352)
..+.+|||||..+ +......++..+|++++|+|+++. +.......+..+.. ++.. +++
T Consensus 84 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~~---~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QLI 148 (435)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TCE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eEE
Confidence 8899999999655 222233456789999999999853 33334444444433 2321 689
Q ss_pred EEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhcCCc---EEEEcCCCcccccchHHHHH
Q 018636 142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNR---CVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 142 lv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sa~~~~~~~~ 199 (352)
+++||+|+... ....++..... +..++...+.. ..+ .+.||.++.++.+
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~----i~iSA~~g~~v~e 202 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYGFNTNKVRF----VPVVAPSGDNITH 202 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTTCCCTTCEE----EECBTTTTBTTTB
T ss_pred EEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcCCCcCCceE----EEeecccCccccc
Confidence 99999999763 11334444444 55566554421 111 2457777777753
No 166
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.49 E-value=1.4e-12 Score=104.74 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=91.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceE--EEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVV--NVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
..+|+|+|++|||||||+|.|+|..... ....+++.......+.+ ++..+ .++||+|.......
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~----------- 94 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI----------- 94 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh-----------
Confidence 4799999999999999999999876411 11122222333333444 55544 56999997643211
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHh
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (352)
....+..++++++|+|.....+-... .++..+...... ..++++++||+|+.......... ...+...
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~ 163 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK 163 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 11123467889999998732221111 233333332111 23899999999986431011111 2223333
Q ss_pred cCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 176 ~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.+ +.+++ +|+.++.++.++++.+.+.+
T Consensus 164 ~~--~~~ld----~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 164 NG--LSFIE----TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TT--CEEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred cC--CEEEE----EeCCCCCCHHHHHHHHHHHh
Confidence 22 23333 57888899999999876643
No 167
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.3e-13 Score=120.74 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=78.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~ 96 (352)
....+|+|||.+|+|||||+|+|+|..... ... ...|.......+.+ .+..+.++||||+.........+...+...
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v-~~~-pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEA-AEY-EFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCG-GGT-CSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcc-cCC-CCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 344799999999999999999999976422 122 22344555555555 889999999999986543333334444433
Q ss_pred HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc-ccceEEEEEeCCCCC
Q 018636 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDDL 150 (352)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ilv~nk~D~~ 150 (352)
+ ..+|++++|+|+++++. +...+..-...++.. ..+|.++++||+|..
T Consensus 147 i----~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 147 A----RTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp H----HHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred H----HhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 3 46799999999884332 222222222222221 123788999999964
No 168
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.49 E-value=5.2e-14 Score=130.55 Aligned_cols=136 Identities=21% Similarity=0.324 Sum_probs=80.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-EeEE----------------------------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKT---------------------------------- 62 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-~~~~---------------------------------- 62 (352)
...+|+|+|.+|+|||||+|.|+|........+....|... .+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 45799999999999999999999987521011111112111 0000
Q ss_pred --EEeeCC---ceEEEEeCCCCCCCCCCcHHHHHH--HHHHHhcccCCccEEEEEEecCC-CCCHHHHHHHHHHHHhhcc
Q 018636 63 --TVLKDG---QVVNVIDTPGLFDLSAGSEFVGKE--IVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGK 134 (352)
Q Consensus 63 --~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~l~~~~~~~~~ 134 (352)
+.+ .+ ..+.||||||+.+..... +.+. +.......+..+|++++|+|++. .+...+..++..+... +
T Consensus 144 ~~~~~-~~~ll~~l~lIDTPG~~~~~~~~--~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-~- 218 (550)
T 2qpt_A 144 MCAQL-PNQVLESISIIDTPGILSGAKQR--VSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-E- 218 (550)
T ss_dssp EEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-G-
T ss_pred eEEec-cccccCCEEEEECcCCCCcchhH--HHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-C-
Confidence 000 00 368899999998632110 0000 11222223357899999999984 3667767666655432 2
Q ss_pred cccceEEEEEeCCCCCCcchhcHHHHhcc
Q 018636 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 135 ~~~~~~ilv~nk~D~~~~~~~~l~~~l~~ 163 (352)
.|+++|+||+|.... ..+.+.+..
T Consensus 219 ---~pvilVlNK~Dl~~~--~el~~~~~~ 242 (550)
T 2qpt_A 219 ---DKIRVVLNKADMVET--QQLMRVYGA 242 (550)
T ss_dssp ---GGEEEEEECGGGSCH--HHHHHHHHH
T ss_pred ---CCEEEEEECCCccCH--HHHHHHHHH
Confidence 289999999999866 556555443
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.49 E-value=1.3e-13 Score=128.61 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee-----------------CCceEEEEeCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~lvDtpG~~~~ 82 (352)
.+|+|+|+.|+|||||++.|++..... ...+++|.........+. ....+++|||||..+.
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 689999999999999999998764311 112223322222222110 1125899999998664
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~ 151 (352)
... ...++..+|++++|+|+++.+.......+..+... +. |+++++||+|+..
T Consensus 84 ~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~v----PiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY-RT----PFVVAANKIDRIH 136 (594)
T ss_dssp TTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGST
T ss_pred HHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CC----eEEEEeccccccc
Confidence 321 12244678999999999977877777777766542 32 8999999999864
No 170
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.48 E-value=9.1e-14 Score=111.86 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=87.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
..+|+|+|.+|+|||||+|.++|... +.... .+.+.......+.+ ++. .+.++||+|.......
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~---------- 72 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX--EVLGEDTYERTLMV-DGESATIILLDMWENKGENEW---------- 72 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC------GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CT----------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccc--cccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhh----------
Confidence 47999999999999999999986432 21111 11111111222333 444 4468999985431100
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHH
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (352)
....++..+|++++|++++++-+-... .++..+..... ....|+++|.||+|+........++ ...+..
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a~ 142 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSE---------GRAXAV 142 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHH---------HHHHHH
Confidence 011223457999999999843332222 23333433221 1123899999999986430011111 111222
Q ss_pred hcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 175 ~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..+..++ .+||+++.++.++++.+.+.+
T Consensus 143 ~~~~~~~------e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 143 VFDXKFI------ETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp HTTCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred HhCCceE------EeccccCCCHHHHHHHHHHHH
Confidence 2233333 568899999999999887655
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.48 E-value=5.4e-14 Score=127.98 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=92.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC-cccc-------------cCC---------------CCCcceeeEeEEEEeeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-------------SAG---------------SSGVTKTCEMKTTVLKDG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~-------------~~~---------------~~~~t~~~~~~~~~~~~~ 68 (352)
...+|+++|+.|+|||||+|.|++.. .+.. +.. ..++|.......+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 34799999999999999999998641 1000 000 023444444444444 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCH-------HHHHHHHHHHHhhcccccceEE
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI 141 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~i 141 (352)
..+.+|||||..+ +...+...+..+|++++|+|+++.... ..+..+..+.. .+- .+++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEE
Confidence 7899999999543 233344456789999999999832211 23333333332 232 1589
Q ss_pred EEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHH
Q 018636 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (352)
Q Consensus 142 lv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 199 (352)
+++||+|+...+...++..... +..++...+...- .-...+.||.++.++.+
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~-~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVGYNPK-TVPFVPISGWNGDNMIE 201 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGG-GCCEEECCTTTCBTTTB
T ss_pred EEEEccccccCCHHHHHHHHHH-----HHHHHHHcCCCcc-CceEEEeecccCcCccc
Confidence 9999999974222444444444 5555544432100 00112456666666653
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.48 E-value=6e-13 Score=129.81 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=102.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc------ccc---c-----CCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA------FKA---S-----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~------~~~---~-----~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
....+|+++|+.|+|||||++.|++... +.. . ....++|.......+.. .+..+.+|||||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPG---- 368 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPG---- 368 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCC----
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCC----
Confidence 3458999999999999999999986410 000 0 00122333332223333 568899999999
Q ss_pred CCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEEEeCCCCCCcchhcHHHHh
Q 018636 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv~nk~D~~~~~~~~l~~~l 161 (352)
...+...+...+..+|++++|+|+++......+..+..+.. .+- | +++++||+|+... ...++...
T Consensus 369 -------HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lgI----P~IIVVINKiDLv~d-~e~le~i~ 435 (1289)
T 3avx_A 369 -------HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VGV----PYIIVFLNKCDMVDD-EELLELVE 435 (1289)
T ss_dssp -------HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HTC----SCEEEEEECCTTCCC-HHHHHHHH
T ss_pred -------hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cCC----CeEEEEEeecccccc-hhhHHHHH
Confidence 33444555556778999999999986666666666665554 343 5 7889999999853 12233232
Q ss_pred cccCChhHHHHHHhcCC---cEEEEcCCCcccccch--------HHHHHHHHHHHHHHH
Q 018636 162 GHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV 209 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~--------~~~~~L~~~i~~~~~ 209 (352)
.. +..++...+- .. +..++||.++ .++.+|++.+...++
T Consensus 436 eE-----i~elLk~~G~~~~~v----p~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 436 ME-----VRELLSQYDFPGDDT----PIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HH-----HHHHHHHTTSCTTTC----CEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HH-----HHHHHHhccccccce----eEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 33 4555554431 11 1124567666 578888888877554
No 173
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=3.3e-13 Score=110.87 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~ 97 (352)
...+|+|+|.+|+|||||+|.|++...... ......++... + ....+.+|||||..... ..+..++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~~-----~-~~~~~~l~Dt~G~~~~~-------~~~~~~~ 76 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAAD-----Y-DGSGVTLVDFPGHVKLR-------YKLSDYL 76 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETT-----G-GGSSCEEEECCCCGGGT-------HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEEE-----e-eCceEEEEECCCcHHHH-------HHHHHHH
Confidence 457999999999999999999998764211 11111111111 1 35577899999975421 2222222
Q ss_pred hcccCCccEEEEEEecC---CCCCHHHHHHHHHHHHh---hcccccceEEEEEeCCCCCCc
Q 018636 98 GMAKDGIHAFLVVFSVT---NRFSQEEETAVHRLPNL---FGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~---~~~~~~~~~~l~~~~~~---~~~~~~~~~ilv~nk~D~~~~ 152 (352)
......+|++++|+|++ ..+..........+... .... .|+++|+||+|+...
T Consensus 77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA 135 (218)
T ss_dssp HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCC--CCEEEEEEchHhccc
Confidence 22223479999999997 33433333333332221 1122 389999999999866
No 174
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.46 E-value=1.6e-13 Score=127.72 Aligned_cols=162 Identities=18% Similarity=0.194 Sum_probs=94.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-cccc-----C-------CCCCcceeeEeEEEEee--C--CceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKAS-----A-------GSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~-----~-------~~~~~t~~~~~~~~~~~--~--~~~~~lvDtpG~~~ 81 (352)
-.+|+|+|+.|+|||||++.|+.... .... . ...++|.......+.+. + +..+++|||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 37899999999999999999975211 0000 0 01123333333334442 2 35788999999765
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
. ...+... +..+|++++|+|+++..+......+..+... +. |+++++||+|+... . .++..
T Consensus 84 F-------~~ev~~~----l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-~i----piIvViNKiDl~~a--~-~~~v~ 144 (599)
T 3cb4_D 84 F-------SYEVSRS----LAACEGALLVVDAGQGVEAQTLANCYTAMEM-DL----EVVPVLNKIDLPAA--D-PERVA 144 (599)
T ss_dssp G-------HHHHHHH----HHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-TC----EEEEEEECTTSTTC--C-HHHHH
T ss_pred H-------HHHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-CC----CEEEeeeccCcccc--c-HHHHH
Confidence 2 2233333 2457999999999877776666665554432 32 89999999999765 2 22222
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. +...+ +.. .+.....||.++.++.+|++.+.+.++.
T Consensus 145 ~e-----i~~~l---g~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 145 EE-----IEDIV---GID---ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HH-----HHHHT---CCC---CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HH-----HHHHh---CCC---cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 22 32222 211 0123467899999999999999888764
No 175
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.46 E-value=1.7e-13 Score=127.33 Aligned_cols=162 Identities=15% Similarity=0.228 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-cccc------------CCCCCcceeeEeEEEEee--CC--ceEEEEeCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKAS------------AGSSGVTKTCEMKTTVLK--DG--QVVNVIDTPGLFD 81 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~~--~~~~lvDtpG~~~ 81 (352)
-.+|+|+|+.|+|||||++.|++... +... ....++|.......+.+. ++ ..+++|||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 47999999999999999999975211 0000 001123333222333332 22 5778999999765
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHh
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l 161 (352)
. ...+... +..+|++++|+|+++..+......+..+.. .+- |+++++||+|+... . .++..
T Consensus 86 F-------~~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~~i----piIvviNKiDl~~a--~-~~~v~ 146 (600)
T 2ywe_A 86 F-------SYEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVE-QDL----VIIPVINKIDLPSA--D-VDRVK 146 (600)
T ss_dssp G-------HHHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHH-TTC----EEEEEEECTTSTTC--C-HHHHH
T ss_pred H-------HHHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHH-CCC----CEEEEEeccCcccc--C-HHHHH
Confidence 3 2233333 347899999999997777777666655543 232 89999999999765 2 22222
Q ss_pred cccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
.. +. ..++.. .+.....||.++.++.+|++.|.+.++.
T Consensus 147 ~e-----l~---~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 147 KQ-----IE---EVLGLD---PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HH-----HH---HTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HH-----HH---HhhCCC---cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 22 22 222211 1124567999999999999999888764
No 176
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.46 E-value=1.4e-15 Score=138.23 Aligned_cols=160 Identities=14% Similarity=0.173 Sum_probs=99.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~ 98 (352)
..+|+++|+.|+|||||++.|.+..... ...+++|.....+.+.+ ++..+++|||||..+.... ..
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~--~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~~ 69 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVAS--GEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------RA 69 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSB--TTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------BC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCcc--ccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------HH
Confidence 3689999999999999999998654311 11223444443444444 5678899999997654321 12
Q ss_pred cccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC
Q 018636 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (352)
..+..+|++++|+|+++.........+..+.. .+. |+++++||+|+...+...+.+.+.. ..-+...+++
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~-~~v----PiIVviNKiDl~~~~~~~v~~~l~~-----~~~~~~~~~~ 139 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKA-AQV----PVVVAVNKIDKPEADPDRVKNELSQ-----YGILPEEWGG 139 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH-TTC----CEEEEEECSSSSTTCCCCTTCCCCC-----CCCCTTCCSS
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHh-cCc----eEEEEEEeccccccCHHHHHHHHHH-----hhhhHHHhCC
Confidence 34467899999999986555555555555543 232 8999999999975311222222211 0000011111
Q ss_pred cEEEEcCCCcccccchHHHHHHHHHHHH
Q 018636 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (352)
Q Consensus 179 ~~~~~~~~~~~sa~~~~~~~~L~~~i~~ 206 (352)
.+ +..++||.++.++.+|++.+..
T Consensus 140 ~~----~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 140 ES----QFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SC----EEEECCTTTCTTCTTHHHHTTT
T ss_pred Cc----cEEEEeeeeccCcchhhhhhhh
Confidence 11 1236788999999999998754
No 177
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.45 E-value=2.5e-13 Score=126.56 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=91.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEE--------EEee---CCceEEEEeCCCCCCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--------TVLK---DGQVVNVIDTPGLFDLSAG 85 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--------~~~~---~~~~~~lvDtpG~~~~~~~ 85 (352)
....+|+|+|.+|||||||+|.|++.... .....|....+.. +... .+..+.++||||.......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~----~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~ 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH
Confidence 34589999999999999999999987641 1111122111111 1111 2567899999995543221
Q ss_pred cHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccC
Q 018636 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~ 165 (352)
.. ..+..+|++++|+|++ .. .....++..+..... . .|+++|+||+|+........++
T Consensus 115 ~~-----------~~l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~v~~~~------ 172 (535)
T 3dpu_A 115 HQ-----------FFMTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYNIEQKK------ 172 (535)
T ss_dssp CH-----------HHHHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCCCCHHH------
T ss_pred HH-----------HHccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccccCHHH------
Confidence 11 1123689999999997 33 333456666665433 2 3999999999987541111111
Q ss_pred ChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
+.......+..++ .+||.++.|+.+|++.+.+.+...
T Consensus 173 ---~~~~~~~~~~~~~------~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 173 ---INERFPAIENRFH------RISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp ---HHHHCGGGTTCEE------ECCC-----CTTHHHHHHHHHTCT
T ss_pred ---HHHHHHhcCCceE------EEecCcccCHHHHHHHHHHHHhcc
Confidence 2223333333333 568889999999999999887653
No 178
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=1.2e-12 Score=112.61 Aligned_cols=171 Identities=17% Similarity=0.163 Sum_probs=79.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC--C---CcceeeEeEEEEee-C--CceEEEEeCCCCCCCCC---CcH
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--S---GVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSA---GSE 87 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~--~---~~t~~~~~~~~~~~-~--~~~~~lvDtpG~~~~~~---~~~ 87 (352)
..+|+|+|+||+|||||+|+|+|...++..... + ..+.......+... . ...++++||+|+..... ...
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 378999999999999999999987332211100 0 01111111112111 1 34679999999954211 001
Q ss_pred HHHHHHH----HHHhcc---------cCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 88 FVGKEIV----KCLGMA---------KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 88 ~~~~~~~----~~~~~~---------~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
.+...+. .++... ...+++++|+.+++ ..++..+.. .++.+.. .. ++++|+||.|+.+.
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~---~l~~l~~-~~--~iilV~~K~Dl~~~- 170 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA---FMKAIHN-KV--NIVPVIAKADTLTL- 170 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHH---HHHHHTT-TS--CEEEEECCGGGSCH-
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHH---HHHHHHh-cC--CEEEEEEeCCCCCH-
Confidence 1222111 111111 12346678877765 348877643 3433322 22 89999999999865
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..+..+... ....+...+..+ ...||.++ ++++++..+.+.+.
T Consensus 171 -~e~~~~~~~-----~~~~~~~~~~~~------~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 171 -KERERLKKR-----ILDEIEEHNIKI------YHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCC------CCCC----------CHHHHHHHH
T ss_pred -HHHHHHHHH-----HHHHHHHcCCeE------EecCCccc-cccHHHHHHHHHhh
Confidence 444333333 444455444332 35677778 89998887776654
No 179
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=118.54 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeC
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk 146 (352)
.+..+.++||||+... . ..+ ...+|++++|++++... +...+.. .++.. +.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~---~----~~l-------~~~~d~vl~V~d~~~~~---~~~~i~~--~il~~----~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS---E----FAV-------ADMVDMFVLLLPPAGGD---ELQGIKR--GIIEM----ADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C---H----HHH-------HTTCSEEEEEECCC-----------------CCS----CSEEEECC
T ss_pred CCCCEEEEECCCcchh---h----hhH-------HhhCCEEEEEEcCCcch---hHHHhHH--HHHhc----CCEEEEee
Confidence 4667899999998642 1 111 24789999999987321 1111111 12222 78999999
Q ss_pred CCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEE-EcCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
+|.... ......+.. +...+......... ......+|+.++.++.+|++.|.+.+..
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 998743 222222222 22222111100000 0112347889999999999999887653
No 180
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.44 E-value=4.7e-13 Score=112.95 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-----CCcceeeEeEEEEeeC---CceEEEEeCCCCCCCCCCc---HH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGS---EF 88 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~~---~~~~~lvDtpG~~~~~~~~---~~ 88 (352)
.+|+|+|+||+|||||+|+|+|......+... ...+.......+.... ...++++|+||++...... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68999999999999999999987652221100 0001111111111101 2367999999997643211 11
Q ss_pred HHHH----HHHHHhc----------ccCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc
Q 018636 89 VGKE----IVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (352)
Q Consensus 89 ~~~~----~~~~~~~----------~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (352)
+... +...... ....+++.++++|.. ..++..+...+..+... .++++|+||+|..+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence 2211 1121111 112357888888855 78999887777776553 289999999999977
Q ss_pred hhcHHHHhcccCChhHHHHHHhcCCcEEE
Q 018636 154 EKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (352)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 182 (352)
..+..+... +...+...+-.++.
T Consensus 156 -~e~~~~k~~-----i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 156 -EEKSEFKQR-----VRKELEVNGIEFYP 178 (270)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCSS
T ss_pred -HHHHHHHHH-----HHHHHHHcCccccC
Confidence 677766665 66556655555443
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.43 E-value=1.9e-12 Score=123.51 Aligned_cols=119 Identities=25% Similarity=0.350 Sum_probs=79.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhC---CCcccccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILG---RKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g---~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~ 80 (352)
....+|+|+|+.|+|||||+|.|++ ......... ...+|.......+.+ .+..++||||||+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence 4458999999999999999999984 211000000 112233333344445 67889999999987
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+.. .....++ ..+|++++|+|++...+......+..+... +. |+++++||+|+...
T Consensus 87 df~-------~~~~~~l----~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-~~----p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFT-------VEVERSL----RVLDGAVTVLDAQSGVEPQTETVWRQATTY-GV----PRIVFVNKMDKLGA 142 (693)
T ss_dssp SCC-------HHHHHHH----HHCSEEEEEEETTTBSCHHHHHHHHHHHHT-TC----CEEEEEECTTSTTC
T ss_pred chH-------HHHHHHH----HHCCEEEEEECCCCCCcHHHHHHHHHHHHc-CC----CEEEEEECCCcccc
Confidence 642 2222222 358999999999877888777777766542 32 89999999999765
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.43 E-value=1.4e-12 Score=124.39 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=77.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhC---CCcccccCC-------------CCCcceeeEeEEEEeeCCceEEEEeCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILG---RKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g---~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~ 80 (352)
....+|+|+|+.|+|||||++.|+. ......... ...+|.......+.+ .+..++||||||..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHV 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSST
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCcc
Confidence 4458999999999999999999982 210000000 112344444444455 67889999999986
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+. ......++ ..+|++++|+|++...+......+..+... +. |+++++||+|....
T Consensus 89 df-------~~~~~~~l----~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DF-------TIEVERSM----RVLDGAIVVFDSSQGVEPQSETVWRQAEKY-KV----PRIAFANKMDKTGA 144 (691)
T ss_dssp TC-------HHHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECTTSTTC
T ss_pred ch-------HHHHHHHH----HHCCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCcccC
Confidence 63 22222222 367999999999977777777776665542 32 89999999999765
No 183
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.42 E-value=2.1e-12 Score=119.68 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=84.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh---CCC---------------ccc--ccCCCCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL---GRK---------------AFK--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~---g~~---------------~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
.-++|+|+|+.++|||||...|+ |.. ... ......++|.......+.| .+..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 34799999999999999998885 211 000 0011233455555566677 88999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|..|.. .++.+.+. -+|+.++|+|+...........++.+... +- |.++++||+|....
T Consensus 109 GHvDF~-------~Ev~raL~----~~DgAvlVvda~~GV~~qT~~v~~~a~~~-~l----p~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFS-------EDTYRVLT----AVDSALVVIDAAKGVEAQTRKLMDVCRMR-AT----PVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCS-------HHHHHHHH----SCSEEEEEEETTTBSCHHHHHHHHHHHHT-TC----CEEEEEECTTSCCC
T ss_pred CcHHHH-------HHHHHHHH----hcCceEEEeecCCCcccccHHHHHHHHHh-CC----ceEEEEecccchhc
Confidence 988863 44444444 67999999999988988888888877764 43 89999999998765
No 184
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.42 E-value=2e-12 Score=113.30 Aligned_cols=110 Identities=10% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHH-HhhcccccceEEEEEe
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP-NLFGKNVFDYMIVVFT 145 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~ilv~n 145 (352)
.+..+.||||||+.+.. ..+ ...+|++++|++++.. . . +..+. ...+ .|.++|+|
T Consensus 147 ~~~~i~liDTpG~~~~~-------~~~-------~~~aD~vl~Vvd~~~~-~--~---~~~l~~~~~~----~p~ivv~N 202 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSE-------TEV-------ARMVDCFISLQIAGGG-D--D---LQGIKKGLME----VADLIVIN 202 (341)
T ss_dssp TTCSEEEEEEECCTTHH-------HHH-------HTTCSEEEEEECC------------CCCCHHHHH----HCSEEEEC
T ss_pred cCCCEEEEeCCCccchH-------HHH-------HHhCCEEEEEEeCCcc-H--H---HHHHHHhhhc----ccCEEEEE
Confidence 46789999999987521 111 2578999999998621 1 1 11111 1112 27899999
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcCC---cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
|+|.... ..+...+.. +...+...+. .+ +....++|+.++.++.+|++.|.+.+.
T Consensus 203 K~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~--~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 203 KDDGDNH--TNVAIARHM-----YESALHILRRKYDEW--QPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTB--CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCCh--HHHHHHHHH-----HHHHHHhccccccCC--CCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9998754 334433333 3333333221 00 011236788999999999999988765
No 185
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.41 E-value=7.8e-13 Score=116.60 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=67.1
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH-hhcccccceEEEEEe
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN-LFGKNVFDYMIVVFT 145 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ilv~n 145 (352)
.+..+.||||||+... ... ....+|++++|++.+.. ... ..++. ++. .|+++|+|
T Consensus 170 ~~~~~iiiDTpGi~~~-------~~~-------~~~~aD~vl~V~d~~~~-~~~-----~~l~~~~~~----~p~ivVlN 225 (355)
T 3p32_A 170 AGFDVILIETVGVGQS-------EVA-------VANMVDTFVLLTLARTG-DQL-----QGIKKGVLE----LADIVVVN 225 (355)
T ss_dssp TTCCEEEEEECSCSSH-------HHH-------HHTTCSEEEEEEESSTT-CTT-----TTCCTTSGG----GCSEEEEE
T ss_pred CCCCEEEEeCCCCCcH-------HHH-------HHHhCCEEEEEECCCCC-ccH-----HHHHHhHhh----cCCEEEEE
Confidence 3577899999997641 111 12578999999998621 110 11111 111 28999999
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEE-cCCCcccccchHHHHHHHHHHHHHHHh
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|+|.... ......... +...+.........+ .+..++||.++.|+.+|++.|.+.+..
T Consensus 226 K~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 226 KADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 9998754 344433333 443333222100000 123357899999999999999988765
No 186
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.41 E-value=3.9e-13 Score=122.65 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=85.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC-ccc-------------cc---------C------CCCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK-AFK-------------AS---------A------GSSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~-~~~-------------~~---------~------~~~~~t~~~~~~~~~~~~ 67 (352)
....+|+++|+.++|||||++.|++.. .+. .+ . ...++|.......+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 345799999999999999999986421 000 00 0 0123444444444555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhcccccce-
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDY- 139 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~- 139 (352)
+..+++|||||..+ +...+...+..+|++++|+|+++.. ....+..+..+.. .+- |
T Consensus 120 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v----p~ 183 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI----NH 183 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC----SS
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC----CE
Confidence 78899999999644 2223334457899999999998432 1223334443332 332 4
Q ss_pred EEEEEeCCCCCCc--chhcHHHHhcccCChhHHHHHHhc-CC----cEEEEcCCCcccccchHHHHHHH
Q 018636 140 MIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLC-DN----RCVLFDNKTKDEAKGTEQVRQLL 201 (352)
Q Consensus 140 ~ilv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~sa~~~~~~~~L~ 201 (352)
+++++||+|+... +.+.++..... +..++... +- ...+ .++||.++.++.+++
T Consensus 184 iivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~~g~~~~~~~~~----i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 184 LVVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKY----MPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEE----EECBTTTTBTTSSCC
T ss_pred EEEEEECccCCCccccHHHHHHHHHH-----HHHHHHHhcCCCccCCceE----Eeccccccccccccc
Confidence 8999999999642 11334444333 44454433 21 1211 256777777776643
No 187
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.41 E-value=1.3e-14 Score=135.65 Aligned_cols=168 Identities=16% Similarity=0.164 Sum_probs=86.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccc--------------c---------------CCCCCcceeeEeEEEEeeC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------AGSSGVTKTCEMKTTVLKD 67 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~ 67 (352)
....+|+|+|+.|+|||||+|.|++...... + ....++|.......+.+ .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 3457899999999999999999964311000 0 00112344444444444 5
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCC-----C--CHHHHHHHHHHHHhhcccccceE
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-----F--SQEEETAVHRLPNLFGKNVFDYM 140 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~~~~ 140 (352)
+..++||||||..+.. ..+...+..+|++++|+|++.. + .......+..+.. ++.. ++
T Consensus 254 ~~~i~iiDTPGh~~f~-----------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip---~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFI-----------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGIS---EI 318 (592)
T ss_dssp -----CCEEESSSEEE-----------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCC---CE
T ss_pred CeEEEEEECCChHHHH-----------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eE
Confidence 6788999999976421 1122334578999999999842 3 4455555555544 3431 48
Q ss_pred EEEEeCCCCCCcchhcHHHHhcccCChhHHHHH-HhcCC---cEEEEcCCCcccccchHHHH--------------HHHH
Q 018636 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDN---RCVLFDNKTKDEAKGTEQVR--------------QLLS 202 (352)
Q Consensus 141 ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~sa~~~~~~~--------------~L~~ 202 (352)
|+|+||+|+.......++..... +..++ ...+. .+. ..++||.++.++. .|++
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~----ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle 389 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVH----FVPISAISGTNLIQKDSSDLYKWYKGPTLLS 389 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEE----EEEECSSSCSSSCSCCCCGGGGTCCSCCHHH
T ss_pred EEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceE----EEEEecccCcccccccccccccccchHHHHH
Confidence 89999999875322445544444 55555 33332 111 1356788888887 6777
Q ss_pred HHHHHHH
Q 018636 203 LVNSVIV 209 (352)
Q Consensus 203 ~i~~~~~ 209 (352)
.|..+++
T Consensus 390 ~l~~~~p 396 (592)
T 3mca_A 390 ALDQLVP 396 (592)
T ss_dssp HHHTSCC
T ss_pred HHHhhcc
Confidence 7766543
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=9.6e-13 Score=117.10 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=45.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEe--------------------eC---CceEEEEeC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KD---GQVVNVIDT 76 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~lvDt 76 (352)
.+|+|+|.+|+|||||+|+|+|... .....++ .|.........+ .+ ...+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~-tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPF-TTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCC-cccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 3799999999999999999998762 1111111 122211111100 02 246889999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCC
Q 018636 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN 115 (352)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~ 115 (352)
||+...... .+.+...+...+..+|++++|+|+++
T Consensus 79 pG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCcccchhh----hhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 998653211 12222333345678999999999974
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.38 E-value=3.2e-12 Score=121.38 Aligned_cols=116 Identities=26% Similarity=0.263 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcc--cccC-------C-------CCCcceeeEeEEEEeeCCceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAF--KASA-------G-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~--~~~~-------~-------~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~ 81 (352)
...+|+|+|++|+|||||++.|++.... ..+. . ...++.......+.+ .+..+++|||||..+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCccc
Confidence 4589999999999999999999843221 0000 0 012233334444444 677889999999654
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCC
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~ 150 (352)
. ...+..+ +..+|++++|+|+...++......+..+... +. |+++++||+|..
T Consensus 87 f-------~~~~~~~----l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~i----p~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 F-------VGEIRGA----LEAADAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKG 139 (665)
T ss_dssp G-------HHHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGC
T ss_pred h-------HHHHHHH----HhhcCcEEEEEcCCcccchhHHHHHHHHHHc-cC----CEEEEecCCchh
Confidence 2 2222222 3367999999998878888777777776653 32 899999999987
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.37 E-value=3.1e-12 Score=122.06 Aligned_cols=119 Identities=20% Similarity=0.263 Sum_probs=77.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc-ccc--cCC-------------CCCcceeeEeEEEEeeCC-------ceEEE
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKA--SAG-------------SSGVTKTCEMKTTVLKDG-------QVVNV 73 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~--~~~-------------~~~~t~~~~~~~~~~~~~-------~~~~l 73 (352)
....+|+|+|+.|+|||||++.|+.... +.. ... ..++|.......+.+ .+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 3457999999999999999999964210 000 000 122344333344444 33 78899
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 74 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|||||..+. ...+.. ++..+|++++|+|++..........+..+... +- |+++++||+|....
T Consensus 87 iDTPG~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~i----p~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDF-------TIEVER----SMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-KV----PRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccch-------HHHHHH----HHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-CC----CEEEEEeCCCcccc
Confidence 999997653 122222 33467999999999866666666666555432 32 89999999998754
No 191
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.37 E-value=3.3e-12 Score=117.83 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=76.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCccc--ccC------------------CCCCcceeeEeEEEEeeCCceEEEEeCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFK--ASA------------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--~~~------------------~~~~~t~~~~~~~~~~~~~~~~~lvDtp 77 (352)
...+|+|+|+.|+|||||++.|++..... .+. ...++|.......+.+ .+..+.|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 35799999999999999999998532100 000 0111222222333444 67889999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|..+.. .... .++..+|++++|+|++..........+..+.. .+. |+++++||+|....
T Consensus 91 G~~df~-------~~~~----~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-~~i----piivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFS-------EDTY----RTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-RDT----PILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCC-------HHHH----HGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-TTC----CEEEEEECTTSCCS
T ss_pred CChhHH-------HHHH----HHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-cCC----CEEEEEcCcCCccc
Confidence 986642 1222 23457899999999987776666555555443 232 89999999999765
No 192
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=109.59 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=53.4
Q ss_pred CccEEEEEEecCCC--CCHHHH-HHHHHHHHhh-cccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc-C
Q 018636 103 GIHAFLVVFSVTNR--FSQEEE-TAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-D 177 (352)
Q Consensus 103 ~~~~~l~v~~~~~~--~~~~~~-~~l~~~~~~~-~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~ 177 (352)
++|++++|+|++++ .+-... .++..+.... ... .|++||.||+|+... ..++ . ...+.... +
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~--~~v~----~-----~~~~~~~~~~ 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVE--RYIR----D-----AHTFALSKKN 228 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCH--HHHH----H-----HHHHHHTSSS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccccc--HHHH----H-----HHHHHHhcCC
Confidence 58999999999854 444332 3444444331 122 289999999998654 3332 1 22233321 2
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
..++ .+||+++.++.++++.+.+.+
T Consensus 229 ~~~~------e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 229 LQVV------ETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CCEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHh
Confidence 2232 568889999999999887655
No 193
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.32 E-value=7.8e-12 Score=109.08 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=60.3
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHH-HHHHHhhcccccceEEEEEe
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~ilv~n 145 (352)
.+..+.||||||+.... . .+ ...+|.+++|++++.. . +...+ ..+... +.++++|
T Consensus 146 ~~~~~iliDT~Gi~~~~---~----~v-------~~~~d~vl~v~d~~~~-~--~~~~i~~~i~~~-------~~ivvlN 201 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---T----AV-------ADLTDFFLVLMLPGAG-D--ELQGIKKGIFEL-------ADMIAVN 201 (337)
T ss_dssp TTCCEEEEEECSSSSCH---H----HH-------HTTSSEEEEEECSCC---------CCTTHHHH-------CSEEEEE
T ss_pred CCCCEEEEECCCCCcch---h----hH-------HhhCCEEEEEEcCCCc-c--cHHHHHHHHhcc-------ccEEEEE
Confidence 46788999999987631 1 11 1478999999987511 1 11100 011111 5677889
Q ss_pred CCCCCCcchhcHHHHhcccCChhHHHHHHhcCC---cEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
|+|+.... ......... +...+..... .+ ......+|+.++.++.+|++.|.+...
T Consensus 202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~--~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATW--TPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTB--CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHH-----HHHHHHhccccccCC--CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99975430 111112222 2222222220 00 011223788899999999999988765
No 194
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.31 E-value=8.3e-12 Score=106.79 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
+|+|+|..|+|||||++.+.+...... ......|.......+ .....+.+|||+|......... ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l--------~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY--------DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH--------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh--------hhhhh
Confidence 589999999999999998876543111 111122332222222 2346789999999766421111 01223
Q ss_pred cCCccEEEEEEecCCCCCHHHHHHHHHHHHh--hcccccceEEEEEeCCCCCCc
Q 018636 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNL--FGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ilv~nk~D~~~~ 152 (352)
+.+++++++|+|.++++...-..+..++... ..+.+ |++++.||+|+...
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~i--pillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSI--NIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTC--EEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCC--cEEEEEECcccCch
Confidence 5789999999999965333322332223221 12233 89999999999865
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=3.4e-11 Score=104.94 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC----------------CceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~lvDtpG~~~~~ 83 (352)
.+|+|||.+|+|||||+|+|++... .....+ .+|.......+.+++ ...+.+|||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p-~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI-EAANYP-FCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------C-CCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCC-CceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999999999998652 111111 112222222233311 1468999999987532
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
.....+... +...+..+|++++|+|++
T Consensus 81 ~~~~gl~~~----fl~~ir~ad~il~VvD~~ 107 (363)
T 1jal_A 81 SKGEGLGNK----FLANIRETDAIGHVVRCF 107 (363)
T ss_dssp HHHGGGTCC----HHHHHHTCSEEEEEEECS
T ss_pred cccchHHHH----HHHHHHhcCeEEEEEecC
Confidence 110111111 122345889999999987
No 196
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.21 E-value=2.1e-11 Score=115.29 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhh---CCCcccccCCC-------------CCcceeeEeEEEEeeCCceEEEEeCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSIL---GRKAFKASAGS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~---g~~~~~~~~~~-------------~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~ 83 (352)
++|+|+|+.++|||||...|+ |...-...... .++|.......+.| ++..++||||||..|.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF- 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF- 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH-
Confidence 579999999999999998884 32210000011 12444444455566 7889999999998875
Q ss_pred CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..++.+.+ .-+|+.++|+|+...........++.+... +- |.++++||+|....
T Consensus 81 ------~~Ev~raL----~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~l----p~i~~INKmDr~~a 134 (638)
T 3j25_A 81 ------LAEVYRSL----SVLDGAILLISAKDGVQAQTRILFHALRKM-GI----PTIFFINKIDQNGI 134 (638)
T ss_dssp ------HHHHHHHH----TTCSEEECCEESSCTTCSHHHHHHHHHHHH-TC----SCEECCEECCSSSC
T ss_pred ------HHHHHHHH----HHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-CC----CeEEEEeccccccC
Confidence 34454444 367999999999988888888888877764 33 78899999998755
No 197
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.19 E-value=1.1e-10 Score=109.86 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=65.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe----------------E-----------------------
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM----------------K----------------------- 61 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~----------------~----------------------- 61 (352)
.|+|||++|||||||+++|+|.... ...|.++..... .
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P---~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP---RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC---CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 5999999999999999999998541 023333321110 0
Q ss_pred ----------------EEEeeCCceEEEEeCCCCCCC--CCCcHHHHHHHHHHHhcccC-CccEEEEEEecCCCCCHHHH
Q 018636 62 ----------------TTVLKDGQVVNVIDTPGLFDL--SAGSEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEEE 122 (352)
Q Consensus 62 ----------------~~~~~~~~~~~lvDtpG~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~ 122 (352)
.........+.++|.||+... ...+......+...+..... ...+++.+++.+..+. ..
T Consensus 124 ~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~ 201 (608)
T 3szr_A 124 AIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TT 201 (608)
T ss_dssp HHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TC
T ss_pred HhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cH
Confidence 000112245889999998763 22233334445554444322 3345555555442222 22
Q ss_pred HHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..+.++..+.... .++|+|+||+|....
T Consensus 202 ~~l~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 202 EALSMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHHHHhhcC--CceEEEecchhhcCc
Confidence 2344444432211 279999999999865
No 198
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.18 E-value=5.2e-10 Score=99.44 Aligned_cols=166 Identities=17% Similarity=0.122 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeE----eEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE----MKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~----~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
..|+|+|+||||||||+|+|+|... +..|.++.... ...+.. .....++++|+||+..... .+ .++.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~----p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~---~~-~~~L 141 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGN----EEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNF---PP-DTYL 141 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT----TSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSC---CH-HHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC----ccCceEEECCeecceeEEeccccccCCeeehHhhcccchHH---HH-HHHH
Confidence 5899999999999999999999765 23333222110 011111 1123688999999875321 11 2222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCC-------cchhcHHHHhcccCCh
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE-------DHEKTLEDFLGHECPK 167 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~-------~~~~~l~~~l~~~~~~ 167 (352)
..+. ....+.+++ ++.+ +...........+.. .+. |+++|+|+.|..- -+.....+.+..
T Consensus 142 ~~~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~-~~~----p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~---- 208 (413)
T 1tq4_A 142 EKMK--FYEYDFFII-ISAT-RFKKNDIDIAKAISM-MKK----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQD---- 208 (413)
T ss_dssp HHTT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHH-TTC----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH----
T ss_pred HHcC--CCccCCeEE-eCCC-CccHHHHHHHHHHHh-cCC----CeEEEEecCcccccCcccccCCHHHHHHHHHH----
Confidence 2221 122344444 6655 444444444343333 233 8999999987541 011122222222
Q ss_pred hHHHHH----Hhc---CCcEEEEcCCCcccccchHHHHHHHHHHHHHHHhc
Q 018636 168 PLKEIL----QLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (352)
Q Consensus 168 ~~~~~~----~~~---~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~~~ 211 (352)
+..+. ... ....+.++... ..+.++.+|.+.|.+.++..
T Consensus 209 -l~~l~~~~l~~~g~~~~~iiliSsh~----l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 209 -IRLNCVNTFRENGIAEPPIFLLSNKN----VCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp -HHHHHHHHHHHTTCSSCCEEECCTTC----TTSTTHHHHHHHHHHHSCGG
T ss_pred -HHHHHHHHHHhcCCCCCcEEEEecCc----CCccCHHHHHHHHHHhCccc
Confidence 33332 121 12444443321 23356999999998888663
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.16 E-value=7.8e-11 Score=114.65 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccC--------------CCCCcceeeEeEEEEee---------------CC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSGVTKTCEMKTTVLK---------------DG 68 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~ 68 (352)
...+|+|+|+.|+|||||++.|++........ ...++|.......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 34799999999999999999998542100000 01112332222233332 15
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..++||||||..+.. ..... ++..+|++++|+|+.+..+......+..+... + . |+++++||+|
T Consensus 98 ~~i~liDTPG~~df~-------~~~~~----~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-~--~--p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-------SEVTA----ALRVTDGALVVVDTIEGVCVQTETVLRQALGE-R--I--KPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSC-------HHHHH----HHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-T--C--EEEEEEECHH
T ss_pred ceEEEEECcCchhhH-------HHHHH----HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C--C--CeEEEEECCC
Confidence 678999999987742 12222 23478999999999977777776665554432 2 2 8999999999
Q ss_pred CC
Q 018636 149 DL 150 (352)
Q Consensus 149 ~~ 150 (352)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 76
No 200
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.15 E-value=2.2e-12 Score=113.84 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCccc----ccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~ 95 (352)
.+|+++|.+|+|||||+|+|+|..... ...+....|+.... .+.+ +..+.++||||+.+.......+..+...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~-~~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI-DIPL--DEESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE-EEES--SSSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE-EEEe--cCCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 689999999999999999999863211 10112222222111 1222 2347899999998764222222222222
Q ss_pred HHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhc
Q 018636 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~ 162 (352)
.+. ....++.++|+++....+-.+...++..+. +.. .|+++++||.|.... ..++....
T Consensus 238 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~--~~~~~~~~ 296 (368)
T 3h2y_A 238 LIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR--TKLEKADE 296 (368)
T ss_dssp HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE--EEHHHHHH
T ss_pred Hhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc--ccHHHHHH
Confidence 222 235678888888874111111222222222 112 289999999999866 55554443
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.15 E-value=3.6e-11 Score=101.61 Aligned_cols=177 Identities=14% Similarity=0.021 Sum_probs=92.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh-----CCCcccccCCCCCc--------------ceeeEeE-EE--------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL-----GRKAFKASAGSSGV--------------TKTCEMK-TT-------------- 63 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~-----g~~~~~~~~~~~~~--------------t~~~~~~-~~-------------- 63 (352)
....++++|..|+|||||++.|+ |..........+.. +...... ..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 34788999999999999999998 65542222111110 0000000 00
Q ss_pred -----------EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHH-HHHHHHh
Q 018636 64 -----------VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNL 131 (352)
Q Consensus 64 -----------~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~ 131 (352)
.+..+..+.||||||..+.. . ...+...+...+.. +++++++|+....+..+... +......
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~----~-~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETF----L-FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHH----H-HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchh----h-hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 00012368899999965421 0 00111111222345 89999998864444444321 1111110
Q ss_pred hcccccceEEEEEeCCCCCCcc-hhcHHHHhcccCChhHHHH---------------------HHhcCCcEEEEcCCCcc
Q 018636 132 FGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEI---------------------LQLCDNRCVLFDNKTKD 189 (352)
Q Consensus 132 ~~~~~~~~~ilv~nk~D~~~~~-~~~l~~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 189 (352)
.. ....|+++|+||+|..... ...+.+++.. +..+ +...+.. ....+.
T Consensus 167 ~~-~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~-----~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~ 236 (262)
T 1yrb_A 167 DL-RLGATTIPALNKVDLLSEEEKERHRKYFED-----IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPP----VRVLYL 236 (262)
T ss_dssp HH-HHTSCEEEEECCGGGCCHHHHHHHHHHHHC-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCC----CCCEEC
T ss_pred hc-ccCCCeEEEEecccccccccHHHHHHHHhC-----hHHHHHHHhccccccchhHhHHHHHHHHhcCc----ccceEE
Confidence 00 1112899999999987541 0112333322 1111 1221211 123467
Q ss_pred cccchHHHHHHHHHHHHHHHh
Q 018636 190 EAKGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 190 sa~~~~~~~~L~~~i~~~~~~ 210 (352)
|+.++.++.+|++.+.+.+..
T Consensus 237 SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 237 SAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred EecCcccHHHHHHHHHHHhcc
Confidence 889999999999999888765
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.14 E-value=1.9e-10 Score=100.98 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEee--------------------CCceEEEEeCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--------------------DGQVVNVIDTPGL 79 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~lvDtpG~ 79 (352)
.+|+|||.+|+|||||+|+|++... .....+ ..|.........++ .+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~v~~~p-~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA-LAANYP-FATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT-TCSSCC-GGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-cccCCC-CceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999997642 111111 11222222222221 2346899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
.........+...+... +..+|++++|+|++
T Consensus 80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCF 110 (368)
T ss_dssp CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECC
T ss_pred cccccccchHHHHHHHH----HHhCCEEEEEEECC
Confidence 76432222223333332 34789999999986
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.13 E-value=1.1e-12 Score=115.92 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC-----CcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR-----KAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~ 94 (352)
.+|+++|.+|+|||||+|+|+|. .....+..++ .|..... +.+ +..+.++||||+.+.......+.....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g-tT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG-TTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT-SSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC-eEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 58999999999999999999986 2222222222 2332222 222 334789999999875422222222222
Q ss_pred HHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
..+. ....++.++|+++....+-.+...++..+. +.. .|+++++||.|....
T Consensus 238 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 238 KIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR 289 (369)
T ss_dssp HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc
Confidence 2221 225789999999884221111222222222 112 289999999998865
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.10 E-value=1.6e-09 Score=103.93 Aligned_cols=119 Identities=29% Similarity=0.331 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh---C------CCc-----cc--ccCCCCCcceeeEeEEEEee------CCceEEEEe
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL---G------RKA-----FK--ASAGSSGVTKTCEMKTTVLK------DGQVVNVID 75 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~---g------~~~-----~~--~~~~~~~~t~~~~~~~~~~~------~~~~~~lvD 75 (352)
.-++|+|+|+.++|||||...|+ | ... .. ......++|.......+.|. ++..++|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 34789999999999999998875 1 100 00 00111234444445555553 246799999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCc
Q 018636 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (352)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~ 152 (352)
|||..|. ..++.+++. -+|+.++|+|+...........++.+... +- |.++++||+|....
T Consensus 92 TPGHvDF-------~~Ev~~aLr----~~DgavlvVDaveGV~~qT~~v~~~a~~~-~l----p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDF-------TIEVERSLR----VLDGAVVVFCGTSGVEPQSETVWRQANKY-GV----PRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHH-TC----CEEEEEECSSSTTC
T ss_pred CCCCccc-------HHHHHHHHH----HhCeEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEccccccCc
Confidence 9998886 455555554 46999999999989999888888887764 32 89999999998755
No 205
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.03 E-value=9.9e-10 Score=101.71 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc-ccccCCCCCcceeeEeEEEEe--eCCceEEEEeCCCCCCCCC-CcHHHHHHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSA-GSEFVGKEI 93 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~--~~~~~~~lvDtpG~~~~~~-~~~~~~~~~ 93 (352)
...+|+|+|.+|+|||||+|.|+|... +..+.+..++|.....+...+ ..+..+.|+||||+.+... ....-..-+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~f 116 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF 116 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHH
Confidence 447899999999999999999999864 222111122233222222111 2467899999999987543 221111111
Q ss_pred HHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
.-....+ + ++|+++...++..+...+.++..
T Consensus 117 ala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 117 ALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 1111111 2 34445555788888877666544
No 206
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.02 E-value=4.2e-10 Score=99.05 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=47.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC----------------CceEEEEeCCCCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~lvDtpG~~~ 81 (352)
.+.+|+|||.+|+|||||+|+|+|... ..... ..+|.......+.+++ ...+.+|||||+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~-p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENF-PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCC-CccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 457999999999999999999998754 11111 1122222222232211 23589999999876
Q ss_pred CCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
.......+... +...+..+|++++|+|+.
T Consensus 99 ~as~~~glg~~----~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 99 GAHNGQGLGNA----FLSHISACDGIFHLTRAF 127 (396)
T ss_dssp --------CCH----HHHHHHTSSSEEEEEEC-
T ss_pred ccchhhHHHHH----HHHHHHhcCeEEEEEecC
Confidence 43221112222 223345889999999986
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.97 E-value=1.1e-09 Score=96.55 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=57.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeC----------------CceEEEEeCCCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLF 80 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~lvDtpG~~ 80 (352)
..+.+|+|+|+||+|||||+|+|+|.........+ .+|.......+.+.+ +..+.++||||+.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p-~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP-YATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS-SCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCC-ceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 45689999999999999999999996531221111 123233333333311 1357899999988
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC
Q 018636 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (352)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (352)
......+.+...+.. .+..+|++++|+++.
T Consensus 97 ~~~s~~e~L~~~fl~----~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 97 KGASTGVGLGNAFLS----HVRAVDAIYQVVRAF 126 (392)
T ss_dssp CCCCSSSSSCHHHHH----HHTTCSEEEEEEECC
T ss_pred cCCcHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence 644333323333332 234789999999986
No 208
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.94 E-value=2.1e-09 Score=91.25 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~ 88 (352)
...+|+|+|.+|+|||||+|+|+|......+..++ +|..... +. .+..+.++||||+.........
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g-~T~~~~~--~~--~~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG-ITTSQQW--VK--VGKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSCCCCHH
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCC-eeeeeEE--EE--eCCCEEEEECcCcCCCCCCCHH
Confidence 45799999999999999999999987644433332 2333322 22 2557889999999886554433
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.93 E-value=9.3e-09 Score=93.69 Aligned_cols=164 Identities=15% Similarity=0.150 Sum_probs=89.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh------CCCcccccCCCCCcce-----------eeEeEEEE---------------e
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGVTK-----------TCEMKTTV---------------L 65 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~------g~~~~~~~~~~~~~t~-----------~~~~~~~~---------------~ 65 (352)
...+|+|+|.+|+||||+++.|+ |..+.-.......... ...++... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999998 6654222111100000 01111100 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce-EEEE
Q 018636 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVV 143 (352)
Q Consensus 66 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ilv 143 (352)
..+..+.||||||.... ...+..++..... . ..+|.+++|+|+....+ .......+... . | .++|
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~-~-i~pd~vllVvDa~~g~~--~~~~a~~~~~~----~--~i~gvV 246 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVAN-A-IQPDNIVYVMDASIGQA--CEAQAKAFKDK----V--DVASVI 246 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHH-H-HCCSEEEEEEETTCCTT--HHHHHHHHHHH----H--CCCCEE
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHHHHHHh-h-hcCceEEEEEecccccc--HHHHHHHHHhh----c--CceEEE
Confidence 04667899999998763 2233444433322 1 26789999999884433 22233333221 1 5 4899
Q ss_pred EeCCCCCCcchhcHHHHhcccCChhHHHHHHhcCC------------cEEEEcCCCcccccchHH-HHHHHHHHHHH
Q 018636 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN------------RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (352)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~sa~~~~~-~~~L~~~i~~~ 207 (352)
+||+|........+. .. ..++. ....|.+....|+..+.+ +.+|++.+.+.
T Consensus 247 lNK~D~~~~~g~~l~-~~------------~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 247 VTKLDGHAKGGGALS-AV------------AATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECTTSCCCCTHHHH-HH------------HHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeCCccccchHHHHH-HH------------HHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999998754111121 11 11111 122233444567777777 88888887665
No 210
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.89 E-value=1.4e-08 Score=83.17 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc-----ccccCCCCCcce--------eeEeEEEE-----------------eeCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA-----FKASAGSSGVTK--------TCEMKTTV-----------------LKDG 68 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-----~~~~~~~~~~t~--------~~~~~~~~-----------------~~~~ 68 (352)
..+|+|+|.+|+|||||++.|++... .......+ .+. ......+. ...+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVV-SKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCC-CHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCC-CchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 47899999999999999999986521 00001111 000 00000000 0123
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCC
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D 148 (352)
..+.+|||+|..... . ......+.+++|+|+...... ..... ..++. |+++|+||+|
T Consensus 109 ~d~iiidt~G~~~~~--~------------~~~~~~~~~i~vvd~~~~~~~----~~~~~-~~~~~----~~iiv~NK~D 165 (221)
T 2wsm_A 109 CDLLLIENVGNLICP--V------------DFDLGENYRVVMVSVTEGDDV----VEKHP-EIFRV----ADLIVINKVA 165 (221)
T ss_dssp CSEEEEEEEEBSSGG--G------------GCCCSCSEEEEEEEGGGCTTH----HHHCH-HHHHT----CSEEEEECGG
T ss_pred CCEEEEeCCCCCCCC--c------------hhccccCcEEEEEeCCCcchh----hhhhh-hhhhc----CCEEEEeccc
Confidence 456788888842110 0 001245778889998733211 11111 11232 8999999999
Q ss_pred CCCcchhcHHHHhcccCChhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
+.......+++.... +. ..+....+ ..+|+.++.++.+|++.+.+.+.
T Consensus 166 l~~~~~~~~~~~~~~-----~~----~~~~~~~i----~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 166 LAEAVGADVEKMKAD-----AK----LINPRAKI----IEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp GHHHHTCCHHHHHHH-----HH----HHCTTSEE----EECBTTTTBTHHHHHHHHHHHHC
T ss_pred CCcchhhHHHHHHHH-----HH----HhCCCCeE----EEeecCCCCCHHHHHHHHHHHHH
Confidence 853200123332222 22 21211111 25688889999999999887764
No 211
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.68 E-value=1.5e-08 Score=84.90 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=39.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~ 84 (352)
.+|+|+|.+|+|||||+|.|+|......+...+ +|..... +. .+..+.++||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g-~T~~~~~--~~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPG-ITKGIQW--FS--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--EE--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCC-CccceEE--EE--eCCCEEEEECCCcccCcC
Confidence 589999999999999999999987644333332 2332221 11 245778999999998654
No 212
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.68 E-value=1.3e-07 Score=77.58 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+|+|+|..|+|||||++.|++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 479999999999999999999864
No 213
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.67 E-value=9.8e-08 Score=86.01 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=66.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce-------------------eeEeEEEEe-------------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-------------------TCEMKTTVL------------- 65 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-------------------~~~~~~~~~------------- 65 (352)
.+..|+|+|.||||||||++.|+|... +..+.+.. ...+..+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~----~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~ 367 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE----QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA 367 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh----hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHH
Confidence 457999999999999999999986432 11111110 000111110
Q ss_pred -----eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH---hcc-cCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccc
Q 018636 66 -----KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL---GMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV 136 (352)
Q Consensus 66 -----~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (352)
..+..+.|+||+|.... ...+..++.... ... ...++-+++|+|+... ......++.+...++
T Consensus 368 l~~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~--- 439 (503)
T 2yhs_A 368 IQAAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG--- 439 (503)
T ss_dssp HHHHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC---
T ss_pred HHHHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC---
Confidence 12446789999997652 223333333222 211 1246778888887622 222333344444333
Q ss_pred cceEEEEEeCCCCCC
Q 018636 137 FDYMIVVFTGGDDLE 151 (352)
Q Consensus 137 ~~~~ilv~nk~D~~~ 151 (352)
...+|+||+|...
T Consensus 440 --itgvIlTKLD~ta 452 (503)
T 2yhs_A 440 --LTGITLTKLDGTA 452 (503)
T ss_dssp --CSEEEEECGGGCS
T ss_pred --CCEEEEEcCCCcc
Confidence 4678899999643
No 214
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.66 E-value=3.1e-08 Score=81.72 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=28.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++.++..+ .+..++|+|+||||||||+++|+|-..
T Consensus 21 L~~isl~i~--~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 21 LKNVNLNIK--EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEeeeEEEc--CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 334444444 347999999999999999999999876
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.64 E-value=2.3e-07 Score=82.82 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=68.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh------CCCcccccCCCCCc-----------ceeeEeEEEE----------------e
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGV-----------TKTCEMKTTV----------------L 65 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~------g~~~~~~~~~~~~~-----------t~~~~~~~~~----------------~ 65 (352)
...|+++|.+|+||||++..|+ |..+.-........ .....++... .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999887 43321111111000 0000011000 0
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 66 ~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
..+..+.||||||.... +..+..++...... ..+|.+++|+|+... .........+...++ ...+|+|
T Consensus 180 ~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~--~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~-----i~gVIlT 247 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE---DKALIEEMKQISNV--IHPHEVILVIDGTIG--QQAYNQALAFKEATP-----IGSIIVT 247 (443)
T ss_dssp HTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHHSCT-----TEEEEEE
T ss_pred hCCCCEEEEECCCcccc---hHHHHHHHHHHHHh--hcCceEEEEEeCCCc--hhHHHHHHHHHhhCC-----CeEEEEE
Confidence 02467889999997653 33444444443222 257889999998732 122223333333222 5778999
Q ss_pred CCCCCCc
Q 018636 146 GGDDLED 152 (352)
Q Consensus 146 k~D~~~~ 152 (352)
|+|....
T Consensus 248 KlD~~~~ 254 (443)
T 3dm5_A 248 KLDGSAK 254 (443)
T ss_dssp CCSSCSS
T ss_pred CCCCccc
Confidence 9998755
No 216
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.63 E-value=3e-07 Score=79.36 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=47.4
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCC---------CCCHHHHHHHHHHHHhhccc--
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN---------RFSQEEETAVHRLPNLFGKN-- 135 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~---------~~~~~~~~~l~~~~~~~~~~-- 135 (352)
.+..+.+|||.| .+.+......++.+++++++|+|+++ .... -...+.++...+...
T Consensus 159 ~~v~l~iwDtaG-----------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr-~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 159 KDIPFHLIDVGG-----------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSR-LTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SSCEEEEEECCS-----------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBH-HHHHHHHHHHHHHCGGG
T ss_pred eeeeeccccCCC-----------cccccccHHHHhccCCEEEEEEECCccccccccccccch-HHHHHHHHHHHhhhhcc
Confidence 567789999999 35556666678899999999999871 1111 112233333333211
Q ss_pred ccceEEEEEeCCCCCC
Q 018636 136 VFDYMIVVFTGGDDLE 151 (352)
Q Consensus 136 ~~~~~ilv~nk~D~~~ 151 (352)
...|++|++||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 1238999999999764
No 217
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.62 E-value=2.4e-07 Score=79.25 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|+||||||||++.|+|..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998543
No 218
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.62 E-value=2e-08 Score=81.42 Aligned_cols=129 Identities=14% Similarity=0.076 Sum_probs=67.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHH-------
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG------- 90 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~------- 90 (352)
.+..++|+|+||||||||+++|+|... +..|.+........ .. ...-.++.+.|.++......+.+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~----p~~G~I~~~g~~~~-~~-~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 107 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK----PLKGEIIYNGVPIT-KV-KGKIFFLPEEIIVPRKISVEDYLKAVASLYG 107 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC----CSEEEEEETTEEGG-GG-GGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCeEEEECCEEhh-hh-cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999999876 44444333211100 00 011112334444432111111100
Q ss_pred -----HHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----EeCCCCCCcchhcHHHHh
Q 018636 91 -----KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFL 161 (352)
Q Consensus 91 -----~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~nk~D~~~~~~~~l~~~l 161 (352)
..+...+... +.+.. -..+ ..+|++++.++.++..+... |-+++ ++.+|.... ..+.+.+
T Consensus 108 ~~~~~~~~~~~l~~~--gl~~~--~~~~-~~LSgGqkqrv~laraL~~~----p~lllLDEPts~LD~~~~--~~l~~~l 176 (214)
T 1sgw_A 108 VKVNKNEIMDALESV--EVLDL--KKKL-GELSQGTIRRVQLASTLLVN----AEIYVLDDPVVAIDEDSK--HKVLKSI 176 (214)
T ss_dssp CCCCHHHHHHHHHHT--TCCCT--TSBG-GGSCHHHHHHHHHHHHTTSC----CSEEEEESTTTTSCTTTH--HHHHHHH
T ss_pred CchHHHHHHHHHHHc--CCCcC--CCCh-hhCCHHHHHHHHHHHHHHhC----CCEEEEECCCcCCCHHHH--HHHHHHH
Confidence 1111111111 11111 0112 37999999999999998776 44555 477776655 5555555
Q ss_pred cc
Q 018636 162 GH 163 (352)
Q Consensus 162 ~~ 163 (352)
..
T Consensus 177 ~~ 178 (214)
T 1sgw_A 177 LE 178 (214)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.61 E-value=2.4e-07 Score=80.04 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=65.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceee-------------------EeEEEEe------------
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-------------------EMKTTVL------------ 65 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-------------------~~~~~~~------------ 65 (352)
..+..|+|+|+||||||||++.|+|... +..+.+.... .+..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~----~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK----NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH----hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3458999999999999999999987543 2222211110 0001100
Q ss_pred ------eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccce
Q 018636 66 ------KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (352)
Q Consensus 66 ------~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (352)
..+..+.++||+|....... +..++...... -.+|..++++|+... ..-...+..+...++ .
T Consensus 203 ~l~~~~~~~~d~vliDtaG~~~~~~~---l~~eL~~i~ra--l~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----i 270 (328)
T 3e70_C 203 AIQHAKARGIDVVLIDTAGRSETNRN---LMDEMKKIARV--TKPNLVIFVGDALAG--NAIVEQARQFNEAVK-----I 270 (328)
T ss_dssp HHHHHHHHTCSEEEEEECCSCCTTTC---HHHHHHHHHHH--HCCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----C
T ss_pred HHHHHHhccchhhHHhhccchhHHHH---HHHHHHHHHHH--hcCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----C
Confidence 01345678999998653222 23333322211 136778888887632 122222333332223 4
Q ss_pred EEEEEeCCCCCCc
Q 018636 140 MIVVFTGGDDLED 152 (352)
Q Consensus 140 ~ilv~nk~D~~~~ 152 (352)
.++++||+|....
T Consensus 271 t~iilTKlD~~a~ 283 (328)
T 3e70_C 271 DGIILTKLDADAR 283 (328)
T ss_dssp CEEEEECGGGCSC
T ss_pred CEEEEeCcCCccc
Confidence 6888999997533
No 220
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.55 E-value=3.5e-08 Score=80.76 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|+||||||||+++|+|-..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 47899999999999999999999876
No 221
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.54 E-value=1.2e-07 Score=78.77 Aligned_cols=44 Identities=7% Similarity=0.107 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcHHHHhcc
Q 018636 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l~~~l~~ 163 (352)
..+|++++.++.++..+.... +++++ ++.+|.... ..+.+.+..
T Consensus 138 ~~LSgGq~qrv~lAral~~~p---~lllLDEPts~LD~~~~--~~i~~~l~~ 184 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNP---KILMLDEATASLDSESE--SMVQKALDS 184 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCC---SEEEEECCSCSSCSSSC--CHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhcCC---CEEEEECCcccCCHHHH--HHHHHHHHH
Confidence 489999999999999988763 34444 588888766 666655543
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.51 E-value=1.9e-07 Score=83.81 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC------cccccCCCC----------------------C-cceee-Ee--EEEEeeC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK------AFKASAGSS----------------------G-VTKTC-EM--KTTVLKD 67 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~------~~~~~~~~~----------------------~-~t~~~-~~--~~~~~~~ 67 (352)
..|+|+|++|+||||+++.|++.. +.-...... . .+... .. ..+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999997631 110000000 0 00000 00 0000014
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccccc-ceEEEEEeC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFTG 146 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ilv~nk 146 (352)
+..+.||||||.... +..+...+.. + .....+|.+++|+++.... . .+..+.. +... . ....+|+||
T Consensus 180 ~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVlnK 247 (432)
T 2v3c_C 180 KADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIVTK 247 (432)
T ss_dssp SCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEEEC
T ss_pred CCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEEeC
Confidence 567889999997652 3333444432 1 2223689999999987332 1 2222222 2211 1 148899999
Q ss_pred CCCCCc
Q 018636 147 GDDLED 152 (352)
Q Consensus 147 ~D~~~~ 152 (352)
+|....
T Consensus 248 ~D~~~~ 253 (432)
T 2v3c_C 248 LDGSAK 253 (432)
T ss_dssp SSSCST
T ss_pred CCCccc
Confidence 998643
No 223
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.51 E-value=3e-07 Score=82.36 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC-----------------CcccccCCCCCcceeeEeEE----EEeeC--CceEEEE
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR-----------------KAFKASAGSSGVTKTCEMKT----TVLKD--GQVVNVI 74 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~--~~~~~lv 74 (352)
+-..|+|+|+.++|||||+|.|+|. ..|..+++....|....... ...+. ...+.++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 3468999999999999999999864 23333333233333222111 11112 2468899
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
||||+++... +......+.. .+.--.++++|-. ...+...+...|.++.+
T Consensus 146 DTeG~~~~~~-~~~~d~~ifa---l~~lLSs~~IyN~--~~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 146 DTQGTFDSQS-TLRDSATVFA---LSTMISSIQVYNL--SQNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEECCCSSHH-HHHHHHHHHH---HHHHHCSEEEEEE--SSSCCHHHHHHHHHHHH
T ss_pred cCCccccccc-chhhhHHHHH---HHHHHhhHHHHhh--cccccHHHHHHHHHHHH
Confidence 9999987532 1111111111 1111124455543 34778888877776555
No 224
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.51 E-value=3.3e-08 Score=82.96 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=27.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++... .+..++|+|+||||||||+++|+|-..
T Consensus 23 ~~vsl~i~--~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 23 KGVSLQAR--AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEEEC--TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EeeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33344443 347999999999999999999999876
No 225
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.50 E-value=9.2e-08 Score=79.73 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|-.. +..|.+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~I~ 63 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR----PIQGKIE 63 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC----CSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 347899999999999999999999876 4445443
No 226
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.49 E-value=1.4e-08 Score=88.96 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=27.8
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++... .+..++|+|+||||||||+++|+|-..
T Consensus 20 ~~vsl~i~--~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 20 KDINLDIH--EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEEEC--TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeeEEEEC--CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 33344443 347899999999999999999999876
No 227
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.49 E-value=8.1e-08 Score=80.42 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 347999999999999999999999876
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.48 E-value=5.8e-07 Score=76.88 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|+||||||||++.|+|..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998653
No 229
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.47 E-value=9.7e-08 Score=83.34 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=71.2
Q ss_pred CCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEE----Eee-CCceE-EEEeCCCCCCC
Q 018636 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLK-DGQVV-NVIDTPGLFDL 82 (352)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~-~~~~~-~lvDtpG~~~~ 82 (352)
+.++..+ .+..++|+|+||||||||+++|+|-.. ++.|.+......... ... ..+.+ ++...+.++..
T Consensus 23 ~vsl~i~--~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 23 NVNINIE--NGERFGILGPSGAGKTTFMRIIAGLDV----PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEC--TTCEEEEECSCHHHHHHHHHHHHTSSC----CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred ceEEEEC--CCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 3344443 347899999999999999999999876 454544432211110 000 11122 33444443321
Q ss_pred C--------------CCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE----E
Q 018636 83 S--------------AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----F 144 (352)
Q Consensus 83 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv----~ 144 (352)
. .......+.+...+... +...+. -..+ ..+|++++.++.++..+... |-+++ +
T Consensus 97 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~-~~~~-~~LSGGq~QRvalAraL~~~----P~lLLLDEP~ 168 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--DIHHVL-NHFP-RELSGAQQQRVALARALVKD----PSLLLLDEPF 168 (353)
T ss_dssp SCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT--TCGGGT-TSCG-GGSCHHHHHHHHHHHHHTTC----CSEEEEESTT
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchHh-cCCh-hhCCHHHHHHHHHHHHHHhC----CCEEEEECCc
Confidence 1 01111112222222211 111100 0012 37999999999999998776 55555 4
Q ss_pred eCCCCCCcchhcHHHHhc
Q 018636 145 TGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 145 nk~D~~~~~~~~l~~~l~ 162 (352)
+.+|.... ..+.+.+.
T Consensus 169 s~LD~~~r--~~l~~~l~ 184 (353)
T 1oxx_K 169 SNLDARMR--DSARALVK 184 (353)
T ss_dssp TTSCGGGH--HHHHHHHH
T ss_pred ccCCHHHH--HHHHHHHH
Confidence 77776544 44444433
No 230
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.45 E-value=1.9e-08 Score=85.89 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..|+|+|+||||||||+++|+|-..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 347999999999999999999999866
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.45 E-value=2e-07 Score=83.20 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=67.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh------CCCcccccCCCCCc-----------ceeeEeEEE---------------Ee
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGV-----------TKTCEMKTT---------------VL 65 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~------g~~~~~~~~~~~~~-----------t~~~~~~~~---------------~~ 65 (352)
....|+++|++|+||||++..|+ |..+.-........ ......+.. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35789999999999999999987 33221100000000 000000000 00
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE
Q 018636 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (352)
Q Consensus 66 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~ 144 (352)
..+..+.||||||..... .+..+..++....... .++.+++|+|+... .........+...++ +..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEE
Confidence 025678899999975411 1223344444433322 46889999998722 122233333433323 688999
Q ss_pred eCCCCCCc
Q 018636 145 TGGDDLED 152 (352)
Q Consensus 145 nk~D~~~~ 152 (352)
||+|....
T Consensus 246 TKlD~~a~ 253 (433)
T 3kl4_A 246 TKMDGTAK 253 (433)
T ss_dssp ECGGGCSC
T ss_pred eccccccc
Confidence 99998754
No 232
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.45 E-value=8.1e-07 Score=77.52 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|+||||||||++.|+|..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999998653
No 233
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.43 E-value=3.1e-08 Score=86.57 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=27.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++..+ .+..++|+|+||||||||+++|+|-..
T Consensus 20 ~~vsl~i~--~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 20 NNINLKIK--DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEEEEC--TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EeeEEEEC--CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 33344443 347899999999999999999999876
No 234
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.43 E-value=1.3e-07 Score=83.13 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||||||||+++|+|-.. ++.|.+..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~i 62 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE----PSRGQIYI 62 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC----CSEEEEEE
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC----CCccEEEE
Confidence 347899999999999999999999876 55554443
No 235
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.43 E-value=4.4e-08 Score=85.28 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++.++... .+..++|+|+||||||||+++|+|-.. ++.|.+.
T Consensus 21 ~~vsl~i~--~Ge~~~llGpsGsGKSTLLr~iaGl~~----p~~G~I~ 62 (359)
T 3fvq_A 21 NDISLSLD--PGEILFIIGASGCGKTTLLRCLAGFEQ----PDSGEIS 62 (359)
T ss_dssp EEEEEEEC--TTCEEEEEESTTSSHHHHHHHHHTSSC----CSEEEEE
T ss_pred EeeEEEEc--CCCEEEEECCCCchHHHHHHHHhcCCC----CCCcEEE
Confidence 33344443 347899999999999999999999876 4444443
No 236
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.42 E-value=2.9e-08 Score=86.39 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 347999999999999999999999876
No 237
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.40 E-value=2.6e-07 Score=80.52 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=31.2
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
++.++..+ .+..++|+|+||||||||+++|+|-.. ++.|.+.
T Consensus 45 ~~vsl~i~--~Gei~~IiGpnGaGKSTLlr~i~GL~~----p~~G~I~ 86 (366)
T 3tui_C 45 NNVSLHVP--AGQIYGVIGASGAGKSTLIRCVNLLER----PTEGSVL 86 (366)
T ss_dssp EEEEEEEC--TTCEEEEECCTTSSHHHHHHHHHTSSC----CSEEEEE
T ss_pred EeeEEEEc--CCCEEEEEcCCCchHHHHHHHHhcCCC----CCceEEE
Confidence 34444444 347999999999999999999999876 4444443
No 238
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.38 E-value=8e-07 Score=82.30 Aligned_cols=124 Identities=10% Similarity=-0.023 Sum_probs=65.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH-H--
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-V-- 94 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~-~-- 94 (352)
.+..++|+|+||||||||+++|+|... +..|.+.....+.++ ...+.... ..+-.+..... .
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~----p~~G~i~~~~~i~~v----------~Q~~~~~~-~~tv~~~~~~~~~~~ 375 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE----PTEGKIEWDLTVAYK----------PQYIKADY-EGTVYELLSKIDASK 375 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC----CSBCCCCCCCCEEEE----------CSSCCCCC-SSBHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECceEEEE----------ecCCcCCC-CCcHHHHHHhhhccC
Confidence 357999999999999999999999876 555555432222211 11111111 11111111111 0
Q ss_pred ----HHHhcccCCccEEEEE-EecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchhcHHHHhc
Q 018636 95 ----KCLGMAKDGIHAFLVV-FSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLG 162 (352)
Q Consensus 95 ----~~~~~~~~~~~~~l~v-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~~l~~~l~ 162 (352)
..+.......+.--+. ..+ ..+|++++.++.++..+.... +++|+ ++.+|.... ..+.+.+.
T Consensus 376 ~~~~~~~~~~l~~~~l~~~~~~~~-~~LSGGe~qrv~lAraL~~~p---~lLlLDEPt~~LD~~~~--~~i~~~l~ 445 (538)
T 1yqt_A 376 LNSNFYKTELLKPLGIIDLYDREV-NELSGGELQRVAIAATLLRDA---DIYLLDEPSAYLDVEQR--LAVSRAIR 445 (538)
T ss_dssp HTCHHHHHHTTTTTTCGGGTTSBG-GGCCHHHHHHHHHHHHHTSCC---SEEEEECTTTTCCHHHH--HHHHHHHH
T ss_pred CCHHHHHHHHHHHcCChhhhcCCh-hhCCHHHHHHHHHHHHHHhCC---CEEEEeCCcccCCHHHH--HHHHHHHH
Confidence 0011111111100000 112 379999999999998887762 34444 588887654 55555444
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.37 E-value=7.3e-08 Score=82.21 Aligned_cols=60 Identities=28% Similarity=0.293 Sum_probs=33.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCC-----CCcceeeEeEEEEeeCCceEEEEeCCCCCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~lvDtpG~~~~ 82 (352)
+..++|+|+||+|||||+|+|+|......+... |..++... ..+.. . ..+++||||+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEE-T--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhc-C--CEEEecCCCcccc
Confidence 479999999999999999999997653322211 11111111 11111 1 3468999998763
No 240
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.35 E-value=8.4e-08 Score=83.72 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 347899999999999999999999876
No 241
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.34 E-value=2.1e-07 Score=80.96 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=27.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++... .+..++|+|+||||||||+++|+|-..
T Consensus 17 ~~vsl~i~--~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 17 DNLSLKVE--SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEEEEC--TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred eeeEEEEc--CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 33344443 347899999999999999999999876
No 242
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.33 E-value=1e-07 Score=83.58 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 347999999999999999999999876
No 243
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.30 E-value=8.9e-07 Score=83.15 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=33.6
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+.++.++..+ .+..++|+|+||||||||+++|+|-.. +..|.+..
T Consensus 358 ~l~~i~l~i~--~G~~~~ivG~sGsGKSTll~~l~g~~~----p~~G~i~~ 402 (582)
T 3b5x_A 358 ALSHVSFSIP--QGKTVALVGRSGSGKSTIANLFTRFYD----VDSGSICL 402 (582)
T ss_pred ccccceEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCCEEEE
Confidence 4445555554 347999999999999999999999876 55555443
No 244
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.28 E-value=8.9e-07 Score=75.91 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|+||+|||||+|+|+ ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4689999999999999999999 655
No 245
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.26 E-value=1.2e-06 Score=80.96 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|... +..|.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 326 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT----ADEGSVT 326 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC----CSBCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 357899999999999999999999876 5555543
No 246
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.25 E-value=1.4e-06 Score=81.63 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~----p~~G~I~~ 415 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE----PTEGKVEW 415 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC----CSBSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 357899999999999999999999876 55555543
No 247
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.24 E-value=7.1e-06 Score=69.92 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC------CCcccccCCCC-Ccce----------eeEeEE--------------E-Eee
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG------RKAFKASAGSS-GVTK----------TCEMKT--------------T-VLK 66 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g------~~~~~~~~~~~-~~t~----------~~~~~~--------------~-~~~ 66 (352)
...|+++|++|+||||++..|++ ....-...... +... ...+.. + ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999873 22211111100 0000 000000 0 001
Q ss_pred -CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEe
Q 018636 67 -DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 67 -~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
.+..+.||||||..... ....+..++..... ...+|.+++|+++... . ..+..+... .... ....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~---~~~~~~~~~-~~~~-~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYE--AIKPDEVTLVIDASIG--Q---KAYDLASKF-NQAS-KIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--G---GHHHHHHHH-HHTC-TTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--H---HHHHHHHHH-HhhC-CCCEEEEe
Confidence 45578899999976511 12223333322211 1257889999988621 1 122333322 2111 13778899
Q ss_pred CCCCCCc
Q 018636 146 GGDDLED 152 (352)
Q Consensus 146 k~D~~~~ 152 (352)
|+|....
T Consensus 248 k~D~~~~ 254 (297)
T 1j8m_F 248 KMDGTAK 254 (297)
T ss_dssp CGGGCTT
T ss_pred CCCCCcc
Confidence 9997643
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.24 E-value=1.1e-06 Score=75.03 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
....|+|+|++|+||||++..|++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4478999999999999999998754
No 249
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.23 E-value=8.6e-07 Score=76.02 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|+||||||||+|+|+|...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 35899999999999999999999876
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.22 E-value=5.5e-07 Score=78.32 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|+||+|||||+|+|+|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 35899999999999999999999765
No 251
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.19 E-value=4.2e-07 Score=74.59 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..++|+|+||||||||+++|+|... +..|.+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 67 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE----PSEGKIKH 67 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC----CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----CCccEEEE
Confidence 347999999999999999999999876 55454443
No 252
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.18 E-value=1.7e-05 Score=70.76 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh-------C----------CCcccccCCCCCcceeeEeEE----EEeeCC--ceEEEE
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL-------G----------RKAFKASAGSSGVTKTCEMKT----TVLKDG--QVVNVI 74 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~-------g----------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~lv 74 (352)
+-..|+|+|..++|||+|+|.|+ | ...|..+++..++|...-... ...+++ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 44788999999999999999765 2 234555445555555544332 112233 358899
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 018636 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (352)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (352)
||.|+++....... ...+..... --...+||-.. ..++..+...|.++.+
T Consensus 146 DTEG~~d~~~~~~~-d~~ifaLa~---LLSS~~IyN~~--~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 146 DTQGTFDSQSTLRD-SATVFALST---MISSIQVYNLS--QNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EECCBTCTTCCHHH-HHHHHHHHH---HHCSEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred eccCCCCcccCccc-cHHHHHHHH---HHhhheeeccc--ccCCHHHHHHHHHHHH
Confidence 99999987654221 111211111 11245555443 3677878777776654
No 253
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.17 E-value=1.1e-06 Score=73.77 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t 55 (352)
.+..++|+|+||||||||+++|+|-.. ++.|.+.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~----p~~G~I~ 69 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS----PSHGECH 69 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC----CSSCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC----CCCcEEE
Confidence 347999999999999999999999876 5555443
No 254
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.17 E-value=3e-07 Score=76.87 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999999876
No 255
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.15 E-value=1.1e-06 Score=82.55 Aligned_cols=27 Identities=37% Similarity=0.347 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 347999999999999999999999876
No 256
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.13 E-value=1e-06 Score=74.18 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=27.6
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++..+ .+..++|+|+||||||||+++|+|-..
T Consensus 25 ~~isl~i~--~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 25 KGINMNIK--RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEE--TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EeeEEEEc--CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 33344443 347999999999999999999999876
No 257
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.12 E-value=1.1e-06 Score=72.53 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=28.2
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++.++..+ .+..++|+|+||||||||+++|+|...
T Consensus 21 l~~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 21 LNGITFSIP--EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred eeeeEEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 333344443 347999999999999999999999876
No 258
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.12 E-value=1.2e-06 Score=73.03 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 347999999999999999999999876
No 259
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.12 E-value=1.1e-06 Score=72.57 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347899999999999999999999876
No 260
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.11 E-value=3.3e-05 Score=69.35 Aligned_cols=123 Identities=20% Similarity=0.143 Sum_probs=65.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh-------CCCcccccCCCCCc-ce----------eeEeEE--------------E-E
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL-------GRKAFKASAGSSGV-TK----------TCEMKT--------------T-V 64 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~-------g~~~~~~~~~~~~~-t~----------~~~~~~--------------~-~ 64 (352)
....|+++|.+|+||||+...|+ |..+.-........ .. ...+.. + .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34789999999999999998887 55432111111000 00 000000 0 0
Q ss_pred ee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE
Q 018636 65 LK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (352)
Q Consensus 65 ~~-~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv 143 (352)
.. .+..+.||||||.... ...+...+..... ...++.+++|+++....+ .+..+.. |.... ....+|
T Consensus 179 ~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~~-----~~~~~~~-f~~~l-~i~gvV 246 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQD-----AANTAKA-FNEAL-PLTGVV 246 (433)
T ss_dssp HHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCTT-----HHHHHHH-HHHHS-CCCCEE
T ss_pred HHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhHH-----HHHHHHH-HhccC-CCeEEE
Confidence 11 3567899999997653 2223333333221 236788899998873321 1222222 22111 124578
Q ss_pred EeCCCCCCc
Q 018636 144 FTGGDDLED 152 (352)
Q Consensus 144 ~nk~D~~~~ 152 (352)
+||+|....
T Consensus 247 lnK~D~~~~ 255 (433)
T 2xxa_A 247 LTKVDGDAR 255 (433)
T ss_dssp EECTTSSSC
T ss_pred EecCCCCcc
Confidence 999998644
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.11 E-value=7.4e-06 Score=69.83 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+|+|+||+||||++..|++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998753
No 262
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.10 E-value=1.1e-05 Score=69.39 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|+|.+|+||||++..|++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988864
No 263
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.10 E-value=1.3e-06 Score=73.75 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 347899999999999999999999876
No 264
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.09 E-value=1.4e-06 Score=72.39 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 347999999999999999999999865
No 265
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.08 E-value=6.6e-07 Score=84.23 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=29.4
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.++.++..+ .+..++|+|+||||||||+++|+|...
T Consensus 370 ~l~~isl~i~--~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 370 VLKDITFHIK--PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp SCCSEEEECC--TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cccceEEEEc--CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3444445544 348999999999999999999999876
No 266
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.08 E-value=1.1e-05 Score=71.93 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc------ccccCCCCCc-c----------eeeEeEEE--------------E-e
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA------FKASAGSSGV-T----------KTCEMKTT--------------V-L 65 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~------~~~~~~~~~~-t----------~~~~~~~~--------------~-~ 65 (352)
....|+++|++|+||||++..|++... .......... . ....++.. . .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 347899999999999999988864321 0000000000 0 00000000 0 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEE
Q 018636 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (352)
Q Consensus 66 -~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~ 144 (352)
..+..+.||||||.... +..+..++...... ..++.+++|+|+... ...+..+.. |... .....+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~--~~pd~vlLVvDa~tg-----q~av~~a~~-f~~~-l~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEV--LGPDEVLLVLDAMTG-----QEALSVARA-FDEK-VGVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGT-----THHHHHHHH-HHHH-TCCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhc--cCCceEEEEEeccch-----HHHHHHHHH-HHhc-CCceEEEE
Confidence 13456889999997653 23333443332221 157888899988622 122222322 2211 11467789
Q ss_pred eCCCCCCc
Q 018636 145 TGGDDLED 152 (352)
Q Consensus 145 nk~D~~~~ 152 (352)
||+|....
T Consensus 245 TKlD~~~~ 252 (425)
T 2ffh_A 245 TKLDGDAR 252 (425)
T ss_dssp ESGGGCSS
T ss_pred eCcCCccc
Confidence 99987543
No 267
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.07 E-value=1.7e-06 Score=71.40 Aligned_cols=25 Identities=44% Similarity=0.440 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..++|+|+||||||||+++|+|-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999999875
No 268
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.07 E-value=3e-06 Score=86.69 Aligned_cols=135 Identities=15% Similarity=0.143 Sum_probs=72.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEe-EEEEeeC-CceEEEE-eCC-------------CCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKD-GQVVNVI-DTP-------------GLFD 81 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~lv-Dtp-------------G~~~ 81 (352)
++.+|||||++|||||||+++|+|--. +..|.+..+..- ..+.... ...+.+| ..| |...
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~----p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~ 1179 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD----TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP 1179 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC----CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc----CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC
Confidence 348999999999999999999998765 555554443210 0000000 0111111 112 2222
Q ss_pred CCCCcHHHHHHHHHH-----HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcc
Q 018636 82 LSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDH 153 (352)
Q Consensus 82 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~ 153 (352)
...+++++.+.+..+ +.....+.|..+ -+.+..+|++++.++.+++.++.+. +++|+ +..+|..++
T Consensus 1180 ~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v--ge~G~~LSgGQrQriaiARAllr~~---~ILiLDEaTSaLD~~tE- 1253 (1321)
T 4f4c_A 1180 SSVTMAQVEEAARLANIHNFIAELPEGFETRV--GDRGTQLSGGQKQRIAIARALVRNP---KILLLDEATSALDTESE- 1253 (1321)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE--TTTSCSSCHHHHHHHHHHHHHHSCC---SEEEEESCCCSTTSHHH-
T ss_pred CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe--cCCCcccCHHHHHHHHHHHHHHhCC---CEEEEeCccccCCHHHH-
Confidence 233444444333221 111113344322 2333689999999999999998863 45554 466665544
Q ss_pred hhcHHHHhcc
Q 018636 154 EKTLEDFLGH 163 (352)
Q Consensus 154 ~~~l~~~l~~ 163 (352)
..+.+.+.+
T Consensus 1254 -~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1254 -KVVQEALDR 1262 (1321)
T ss_dssp -HHHHHHHTT
T ss_pred -HHHHHHHHH
Confidence 444444443
No 269
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.07 E-value=1.7e-06 Score=72.67 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=27.8
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++.++... .+..++|+|+||||||||+++|+|-..
T Consensus 24 ~~vsl~i~--~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 24 ENVSLVIN--EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeeEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 33344443 347999999999999999999999876
No 270
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.07 E-value=1.7e-06 Score=72.79 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.7
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..+..+ .+..++|+|+||||||||+++|+|-..
T Consensus 36 ~~vsl~i~--~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 36 QGLTFTLY--PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EeeEEEEC--CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33344443 347999999999999999999999876
No 271
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.06 E-value=1.7e-06 Score=71.84 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 347899999999999999999999876
No 272
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.06 E-value=4.7e-07 Score=84.90 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 347999999999999999999999876
No 273
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.03 E-value=3.1e-05 Score=67.79 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=44.3
Q ss_pred EEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCC---------HHHHHHHHHHHHhhc
Q 018636 63 TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFG 133 (352)
Q Consensus 63 ~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~---------~~~~~~l~~~~~~~~ 133 (352)
+.+ ++..+.+|||+|. +.+......++.++++++||++++ .++ ..-...+.++...+.
T Consensus 196 ~~~-~~~~l~i~Dt~Gq-----------~~~r~~w~~~f~~~~~iIfv~dls-~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 196 FEI-KNVPFKMVDVGGQ-----------RSERKRWFECFDSVTSILFLVSSS-EFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp EEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETT-CTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred eee-CCeEEEEEeccch-----------hhhhhhHHHHhCCCCEEEEEEECc-cccccccccccccHHHHHHHHHHHHhc
Confidence 344 5778899999994 333344456778999999999998 321 111222333333332
Q ss_pred cc--ccceEEEEEeCCCCC
Q 018636 134 KN--VFDYMIVVFTGGDDL 150 (352)
Q Consensus 134 ~~--~~~~~ilv~nk~D~~ 150 (352)
.. ...|++|++||+|+.
T Consensus 263 ~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred chhhCCCCEEEEEEChhhh
Confidence 11 123899999999975
No 274
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.03 E-value=2.7e-05 Score=67.99 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=70.9
Q ss_pred EEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCC--------CHHHHHHHHHHHHhhc
Q 018636 62 TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF--------SQEEETAVHRLPNLFG 133 (352)
Q Consensus 62 ~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~--------~~~~~~~l~~~~~~~~ 133 (352)
.+.+ ++..+.+|||+|... +......++.+++++++|+|+++.- ...-...+.++...+.
T Consensus 187 ~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 187 HFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp EEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred EEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 3444 577889999999432 3334455778999999999998310 0111223334443332
Q ss_pred cc--ccceEEEEEeCCCCCCcc--h-------------hcHHHHhcccCChhHHHHHHhc-----CCcEEEEcCCCcccc
Q 018636 134 KN--VFDYMIVVFTGGDDLEDH--E-------------KTLEDFLGHECPKPLKEILQLC-----DNRCVLFDNKTKDEA 191 (352)
Q Consensus 134 ~~--~~~~~ilv~nk~D~~~~~--~-------------~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~sa 191 (352)
.. ...|++|++||.|+.... . ...++... ++....... ...+..+ .+||
T Consensus 255 ~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~-----~~~~~f~~l~~~~~~~~~~~~----etSA 325 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA-----YIQCQFEDLNKRKDTKEIYTH----FTCA 325 (353)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHH-----HHHHHHHTTCSCTTTCCEEEE----ECCT
T ss_pred CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHH-----HHHHHHHHhhcccCCCceEEE----EEEC
Confidence 11 123899999999975220 0 01111111 111111111 1222222 4688
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 018636 192 KGTEQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 192 ~~~~~~~~L~~~i~~~~~~ 210 (352)
.++.++.++++.+.+.+..
T Consensus 326 ~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 326 TDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHH
Confidence 8899999999988776643
No 275
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.02 E-value=5.1e-06 Score=84.99 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=69.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcceeeEeE-EEEee-CCceE-EEEeCCCC-----------CCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVV-NVIDTPGL-----------FDLS 83 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~-~lvDtpG~-----------~~~~ 83 (352)
.+..++|||++|||||||+++|+|.-. +..|.+..+..-. .+... -...+ ++-..|.+ +...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~----~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~ 518 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD----VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG 518 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC----CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc----cccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc
Confidence 347999999999999999999999876 5555444321100 00000 00011 12223322 2222
Q ss_pred CCcHHHHHHHHHH-----HhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEE---EeCCCCCCcchh
Q 018636 84 AGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEK 155 (352)
Q Consensus 84 ~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv---~nk~D~~~~~~~ 155 (352)
.+.+++.+.+..+ +...-.+.+..+ -+-+..+|++++.++.+++.++.+. +++|+ +.-+|.... .
T Consensus 519 ~~~~~v~~a~~~a~l~~~i~~lp~G~~T~v--Ge~G~~LSGGQkQRiaiARAl~~~~---~IliLDE~tSaLD~~te--~ 591 (1321)
T 4f4c_A 519 ITREEMVAACKMANAEKFIKTLPNGYNTLV--GDRGTQLSGGQKQRIAIARALVRNP---KILLLDEATSALDAESE--G 591 (1321)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHSTTTTSSEE--SSSSCCCCHHHHHHHHHHHHHTTCC---SEEEEESTTTTSCTTTH--H
T ss_pred chHHHHHHHHHHccchhHHHcCCCCCccEe--cCCCCCCCHHHHHHHHHHHHHccCC---CEEEEecccccCCHHHH--H
Confidence 2333333322221 111112333222 2333589999999999999998863 44444 466665543 4
Q ss_pred cHHHHh
Q 018636 156 TLEDFL 161 (352)
Q Consensus 156 ~l~~~l 161 (352)
.+.+.+
T Consensus 592 ~i~~~l 597 (1321)
T 4f4c_A 592 IVQQAL 597 (1321)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 276
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.00 E-value=2.4e-06 Score=72.50 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 347999999999999999999999876
No 277
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.00 E-value=2.5e-06 Score=67.02 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+++|+|+||||||||+++|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 278
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.00 E-value=5.5e-05 Score=70.81 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..++|+|+||+|||||+++|+|...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5689999999999999999999876
No 279
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.99 E-value=3e-06 Score=64.99 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|+||||||||++.|+|..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34789999999999999999999865
No 280
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.96 E-value=3.3e-06 Score=68.25 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|+||||||||+++|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999864
No 281
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.95 E-value=1.7e-06 Score=69.78 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|+||||||||+++|+|. .
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~ 46 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-A 46 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-H
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-C
Confidence 468999999999999999999998 6
No 282
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.94 E-value=4.8e-06 Score=69.93 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..++|+|+||||||||+++|+|-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999997
No 283
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.93 E-value=4.8e-06 Score=69.25 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..++|+|+||||||||+++|+|-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999996
No 284
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.92 E-value=5.4e-06 Score=69.30 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=27.5
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
++..+..+ .+..++|+|+||||||||+++|+|-..
T Consensus 37 ~~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 37 KSINFFIP--SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEEEEC--TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EeeEEEEC--CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 33344444 347999999999999999999999754
No 285
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.89 E-value=4.1e-06 Score=67.12 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..|+|+|+||||||||++.|+|..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999753
No 286
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.89 E-value=4.6e-06 Score=67.91 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=22.9
Q ss_pred CCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 8 GDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
++..+..+. +..++|+|+||||||||+++|+|..
T Consensus 14 ~~isl~i~~--G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNN--IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------C--CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCC--CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 444555543 4789999999999999999999853
No 287
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.88 E-value=2.9e-05 Score=66.19 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+++|++|+||||++..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998753
No 288
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.84 E-value=7.3e-06 Score=66.60 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457999999999999999999998654
No 289
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.82 E-value=8.3e-06 Score=65.61 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|+||||||||++.|+|.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999976
No 290
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.82 E-value=9.9e-06 Score=67.70 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..++|+|+||||||||+++|+|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999999975
No 291
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.81 E-value=9.1e-06 Score=67.48 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=22.8
Q ss_pred CCCCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 4 RVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+.++.++..+ .+..|+|+|+||||||||++.|+|.
T Consensus 12 ~~~l~~isl~i~--~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 12 DLGTENLYFQSM--RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----------C--CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceeecceeccCC--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345556566554 3489999999999999999999874
No 292
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.81 E-value=1.4e-05 Score=73.78 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|...
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 567999999999999999999999876
No 293
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.79 E-value=1.2e-05 Score=62.63 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+..++|+|+||||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 347899999999999999998764
No 294
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.78 E-value=1e-05 Score=63.65 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..|+|+|++|||||||++.|++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 295
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.78 E-value=1e-05 Score=65.28 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..|+|+|+||||||||++.|+|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999998654
No 296
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.77 E-value=8.4e-06 Score=64.59 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..|+|+|+||||||||++.|+|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999997643
No 297
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.77 E-value=0.00041 Score=59.58 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=73.9
Q ss_pred eEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC-------CCCC-HHHHHHHHHHHHh
Q 018636 60 MKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------NRFS-QEEETAVHRLPNL 131 (352)
Q Consensus 60 ~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-------~~~~-~~~~~~l~~~~~~ 131 (352)
...+.. .+..+.+|||.| .+.+......++.+++++++|++++ +.-+ ..-...+.++...
T Consensus 159 ~~~~~~-~~v~l~iwDtgG-----------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 159 EYPFDL-QSVIFRMVDVGG-----------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp EEEEEE-TTEEEEEEEECC-----------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred EEEEEe-eceeeEEEEcCC-----------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 333444 677889999999 3555556667889999999999764 1111 1112233444444
Q ss_pred hccc--ccceEEEEEeCCCCCCcc--hhcHHHHhcccCC---------hhHHHHHHhc----CCcEEEEcCCCcccccch
Q 018636 132 FGKN--VFDYMIVVFTGGDDLEDH--EKTLEDFLGHECP---------KPLKEILQLC----DNRCVLFDNKTKDEAKGT 194 (352)
Q Consensus 132 ~~~~--~~~~~ilv~nk~D~~~~~--~~~l~~~l~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~sa~~~ 194 (352)
+... ...|++|++||+|+.... ...+.++...... .++....... ...++.+ .+||.+.
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~----~TsA~d~ 302 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDT 302 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEE----ECCTTCH
T ss_pred hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEE----EEEeecC
Confidence 3321 123899999999975320 0111111111000 0111111111 1122222 3578888
Q ss_pred HHHHHHHHHHHHHHHh
Q 018636 195 EQVRQLLSLVNSVIVQ 210 (352)
Q Consensus 195 ~~~~~L~~~i~~~~~~ 210 (352)
.++..+++.+.+.+..
T Consensus 303 ~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 303 ENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887654
No 298
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.76 E-value=1.6e-05 Score=63.10 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+|+|+||||||||++.|+|.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999986
No 299
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.74 E-value=2e-05 Score=73.04 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..++|+|+||||||||+++|+|...
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568999999999999999999999865
No 300
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.74 E-value=8.2e-06 Score=72.01 Aligned_cols=36 Identities=31% Similarity=0.267 Sum_probs=27.6
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++.++... .+..++|+|+||||||||+++|+|-..
T Consensus 37 L~~vsl~i~--~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 37 LENISFSIS--PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEEEEC--TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred eeceeEEEc--CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 333344443 347999999999999999999999754
No 301
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.74 E-value=2.1e-05 Score=73.66 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..++|+|+||+|||||+++|+|...
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3568999999999999999999999876
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.73 E-value=1.1e-05 Score=63.90 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+|+|+|+||+|||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4789999999999999999998654
No 303
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.72 E-value=4.2e-05 Score=78.18 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+.+++|||+||||||||+++|+|...
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999999876
No 304
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.71 E-value=1.5e-05 Score=64.46 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|++|||||||++.|.|..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998853
No 305
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.70 E-value=1.5e-05 Score=67.78 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+|+|+||+|||||+++|+|-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3479999999999999999999864
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.69 E-value=1.8e-05 Score=66.17 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..|+|+|+||||||||+++|+|...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 457999999999999999999998654
No 307
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.67 E-value=2.2e-05 Score=68.98 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
.+..|+|+|+||||||||+++|+|... +..+.++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~----~~~g~I~i 208 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP----FDQRLITI 208 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC----TTSCEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC----CCceEEEE
Confidence 346899999999999999999999765 44444443
No 308
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.66 E-value=0.00011 Score=64.92 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=45.7
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCC---------CCCHHHHHHHHHHHHhhccc--
Q 018636 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN---------RFSQEEETAVHRLPNLFGKN-- 135 (352)
Q Consensus 67 ~~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~---------~~~~~~~~~l~~~~~~~~~~-- 135 (352)
++..+.+|||.|... +......++.+++++++|+|+++ .... -.....++..++...
T Consensus 215 ~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns-~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 215 DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR-LQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBH-HHHHHHHHHHHHTCTTC
T ss_pred CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccch-HHHHHHHHHHHHhcccC
Confidence 567889999999432 33344567789999999999983 0211 122333343333211
Q ss_pred ccceEEEEEeCCCCC
Q 018636 136 VFDYMIVVFTGGDDL 150 (352)
Q Consensus 136 ~~~~~ilv~nk~D~~ 150 (352)
...|++||+||+|+.
T Consensus 283 ~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 283 RTISVILFLNKQDLL 297 (402)
T ss_dssp SSCCEEEEEECHHHH
T ss_pred CCCeEEEEEEChhhh
Confidence 123899999999975
No 309
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.66 E-value=2e-05 Score=68.27 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCcccccCCCCCcce
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~ 56 (352)
+..|+|+|+||||||||+++|+|... +..+.++.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i 204 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISI 204 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEE
Confidence 45899999999999999999998765 44454443
No 310
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.66 E-value=3.1e-05 Score=72.62 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..++|+|+||+|||||+++|+|...
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 4568999999999999999999999876
No 311
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.65 E-value=2.4e-05 Score=62.01 Aligned_cols=26 Identities=38% Similarity=0.763 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|++|||||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998653
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.61 E-value=2.8e-05 Score=66.76 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+..|+|+|+||||||||+++|.|...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4568999999999999999999998654
No 313
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.58 E-value=2.3e-05 Score=80.10 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=28.4
Q ss_pred CCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++.++..+ .+.+|+|+|+||||||||+++|+|-..
T Consensus 1049 l~~vsl~i~--~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1049 LQGLSLEVK--KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp BSSCCEEEC--SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred ecceeEEEc--CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 344444443 348999999999999999999999765
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.58 E-value=2.2e-05 Score=64.50 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=16.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh-CCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL-GRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~-g~~ 43 (352)
+..|+|+|+||||||||++.|+ |..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999999 764
No 315
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.55 E-value=0.00036 Score=60.84 Aligned_cols=70 Identities=9% Similarity=0.063 Sum_probs=42.2
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecC-------C--CCCHHHHHHHHHHHHhhccc--cc
Q 018636 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------N--RFSQEEETAVHRLPNLFGKN--VF 137 (352)
Q Consensus 69 ~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-------~--~~~~~~~~~l~~~~~~~~~~--~~ 137 (352)
..+.+|||.|... +......++.+++++++|+|++ + .... -.....++...+... ..
T Consensus 183 v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s-~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 183 EVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNR-MMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp -EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBH-HHHHHHHHHHHHTCGGGSS
T ss_pred eeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhH-HHHHHHHHHHHHhccccCC
Confidence 5688999999543 2233455678999999999986 0 1111 112223333332211 12
Q ss_pred ceEEEEEeCCCCC
Q 018636 138 DYMIVVFTGGDDL 150 (352)
Q Consensus 138 ~~~ilv~nk~D~~ 150 (352)
.|++||+||+|+.
T Consensus 251 ~piiLvgNK~DL~ 263 (354)
T 2xtz_A 251 TSFMLFLNKFDIF 263 (354)
T ss_dssp CEEEEEEECHHHH
T ss_pred CeEEEEEECcchh
Confidence 3899999999975
No 316
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.53 E-value=3.5e-05 Score=72.34 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 347999999999999999999999865
No 317
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.53 E-value=3.8e-05 Score=60.85 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|+||||||||++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999985
No 318
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.52 E-value=5e-05 Score=61.25 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|++|||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.51 E-value=5.7e-05 Score=59.01 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+..|+|+|.+||||||+++.|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999753
No 320
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.51 E-value=3.5e-05 Score=69.67 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..++|+|+||||||||+++|+|-..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 6899999999999999999998655
No 321
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.51 E-value=4.4e-05 Score=61.13 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+|+|++|||||||++.|++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999764
No 322
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.50 E-value=3.3e-05 Score=72.69 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||+++|+|-..
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 347999999999999999999999865
No 323
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.47 E-value=4.8e-05 Score=62.25 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||||||||++.|+|...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999998443
No 324
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.47 E-value=5.4e-05 Score=60.84 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..|+|+|++|||||||++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 325
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.46 E-value=5.5e-05 Score=69.37 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..|+|+|+||||||||+|+|+|...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35699999999999999999998765
No 326
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.46 E-value=6.8e-05 Score=62.16 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh---CCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL---GRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~---g~~~ 44 (352)
...|+|+|+||||||||++.|+ |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3689999999999999999999 7654
No 327
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.45 E-value=4.1e-05 Score=69.30 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+.+|+|+|+||||||||+++|+|-..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 457999999999999999999998765
No 328
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.44 E-value=7.8e-05 Score=61.12 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+..|+|+|.+|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45689999999999999999999875
No 329
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.44 E-value=3.4e-05 Score=75.47 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+.+++|+|+||+|||||+++|+|...
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346999999999999999999999876
No 330
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.44 E-value=5.8e-05 Score=65.91 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..|+|+|+||||||||+++|+|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45899999999999999999988654
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.44 E-value=6.8e-05 Score=64.38 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+..|+|+|++|||||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45579999999999999999999875
No 332
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.43 E-value=5.4e-05 Score=67.54 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..|+|+|+||||||||+++|+|...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 446899999999999999999998654
No 333
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.43 E-value=7.4e-05 Score=61.98 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~ 40 (352)
.+..++|+|+||||||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 44789999999999999999998
No 334
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.41 E-value=5.3e-05 Score=66.80 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+.+++|+|+||||||||+++|+|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 47999999999999999999998754
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.41 E-value=9.6e-05 Score=61.48 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh---CCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL---GRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~---g~~~ 44 (352)
.+..|+|+|++||||||+++.|+ |-..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 45799999999999999999998 6543
No 336
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.39 E-value=6.1e-05 Score=58.67 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..|+|+|.+|||||||.+.|.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998653
No 337
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.37 E-value=8.7e-05 Score=59.38 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|++|||||||++.|++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998764
No 338
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00097 Score=59.59 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|.|++|+|||+|.++|++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999998653
No 339
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.36 E-value=7.7e-05 Score=64.95 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..+.+++|+|+||+|||||++.|+|...
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999998764
No 340
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.32 E-value=9.3e-05 Score=65.22 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..|+|+|+||||||||+++|+|...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 457899999999999999999998643
No 341
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.32 E-value=4.5e-05 Score=59.24 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
..|+|+|++|||||||++.|+|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999997654
No 342
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.30 E-value=0.0004 Score=67.90 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=25.2
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+..+..+... .+..++|+|+||+|||||++.|.+
T Consensus 662 V~ndvsl~~~--~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 662 VPNNTDLSED--SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEECTT--SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ecccccccCC--CCeEEEEECCCCCchHHHHHHHHH
Confidence 3444444433 347899999999999999999864
No 343
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0013 Score=58.00 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|.|.|++|+|||+|.++|++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998753
No 344
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0017 Score=57.49 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|.|++|+|||+|.++|++..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHHh
Confidence 579999999999999999998754
No 345
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.28 E-value=0.00018 Score=62.09 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..++|+|.+|||||||+|.|+|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 578999999999999999999764
No 346
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.27 E-value=9.5e-05 Score=56.06 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|++|+|||||+++|.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999997654
No 347
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.25 E-value=0.00068 Score=66.49 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHh
Q 018636 18 GERTVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l 39 (352)
.+..++|+|+||+|||||++.|
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3478999999999999999999
No 348
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.24 E-value=0.00011 Score=57.59 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
+..++|+|++|+|||||+++|++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987653
No 349
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.23 E-value=0.00013 Score=57.38 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+|+|+||+|||||+.+|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998653
No 350
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.23 E-value=0.00019 Score=68.48 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHhhcccccceE--EEE----EeCCCCCCcchhcHHHHhcc
Q 018636 116 RFSQEEETAVHRLPNLFGKNVFDYM--IVV----FTGGDDLEDHEKTLEDFLGH 163 (352)
Q Consensus 116 ~~~~~~~~~l~~~~~~~~~~~~~~~--ilv----~nk~D~~~~~~~~l~~~l~~ 163 (352)
.+|++++.++.+++.+... |- +++ ++.+|.... .++.+.+..
T Consensus 202 ~LSGGe~QRv~iArAL~~~----p~~~lLlLDEPtsgLD~~~~--~~l~~~l~~ 249 (670)
T 3ux8_A 202 TLSGGEAQRIRLATQIGSR----LTGVLYVLDEPSIGLHQRDN--DRLIATLKS 249 (670)
T ss_dssp GSCHHHHHHHHHHHHHHTC----CCSCEEEEECTTTTCCGGGH--HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhC----CCCCEEEEECCccCCCHHHH--HHHHHHHHH
Confidence 7889999999998888765 33 555 488887655 666655544
No 351
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0019 Score=57.60 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|.|++|+|||+|.++|++..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998653
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.18 E-value=0.00021 Score=61.24 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
....|+|+|++|||||||++.|.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997653
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.18 E-value=0.00021 Score=57.24 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..+..|+|+|.+|||||||++.|.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998753
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.18 E-value=0.00021 Score=57.32 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 355
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.17 E-value=0.043 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..++|+|++|+|||||++.|++..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998654
No 356
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.16 E-value=0.00016 Score=64.98 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=25.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
-..+.+++|+|+||||||||++.|+|...
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34568999999999999999999998764
No 357
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.16 E-value=0.00016 Score=57.89 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 358
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.14 E-value=0.00019 Score=58.51 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+|+|+|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 359
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.11 E-value=2.9e-05 Score=63.19 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 21 TVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.++|+|+||||||||+++|+|...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 568999999999999999998765
No 360
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.11 E-value=0.00019 Score=70.23 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+.+++|+|+||||||||+++|+|.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999954
No 361
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.11 E-value=0.00032 Score=56.36 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|.+|||||||.+.|.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34789999999999999999998763
No 362
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.10 E-value=0.00025 Score=56.89 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..|+|+|++|||||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999754
No 363
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.09 E-value=0.0011 Score=58.27 Aligned_cols=97 Identities=8% Similarity=0.128 Sum_probs=60.8
Q ss_pred HHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcc--hhcHHHHhcccCChh
Q 018636 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKP 168 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~--~~~l~~~l~~~~~~~ 168 (352)
+.+.+.+...+...+++++|+|+++ + +..+...+...++. +|+++|+||+|+.... ...+.+++
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d-~---~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~~~~~~~~~~~l------- 122 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFD-F---NGSWLPGLHRFVGN---NKVLLVGNKADLIPKSVKHDKVKHWM------- 122 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTS-H---HHHCCTTHHHHSSS---SCEEEEEECGGGSCTTSCHHHHHHHH-------
T ss_pred HHHHHHHHHHhccCcEEEEEEECCC-C---cccHHHHHHHHhCC---CcEEEEEEChhcCCcccCHHHHHHHH-------
Confidence 3444555555567889999999983 2 33344445555442 3899999999997541 11222222
Q ss_pred HHHHHHhcCC---cEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 169 LKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 169 ~~~~~~~~~~---~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
.......+. .++ .+||.++.++.+|++.+.+..
T Consensus 123 -~~~~~~~g~~~~~v~------~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 123 -RYSAKQLGLKPEDVF------LISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp -HHHHHHTTCCCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred -HHHHHHcCCCcccEE------EEeCCCCcCHHHHHhhhhhhc
Confidence 223344443 222 468888999999999988765
No 364
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0018 Score=57.84 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|.|++|+|||+|.++|++..
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhcc
Confidence 579999999999999999998754
No 365
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.04 E-value=0.00037 Score=55.64 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 366
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.04 E-value=0.00042 Score=52.46 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
...+|+|+||+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999974
No 367
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.02 E-value=0.0015 Score=57.18 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.++|+|++|+|||||+++|++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 368
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.01 E-value=0.015 Score=46.29 Aligned_cols=69 Identities=6% Similarity=-0.018 Sum_probs=40.2
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCC
Q 018636 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (352)
Q Consensus 68 ~~~~~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~ 147 (352)
...+.|+|||+.... .....+ ..+|.+++++..+ ..+..-...++.+..........++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~~---------~~~~~l----~~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV---------ITSAAV----MVSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSSH---------HHHHHH----HHCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCCH---------HHHHHH----HHCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 457889999985531 111122 2368899988887 44433344555555432111112668999999
Q ss_pred CCC
Q 018636 148 DDL 150 (352)
Q Consensus 148 D~~ 150 (352)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 854
No 369
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.01 E-value=0.00026 Score=59.57 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHhhCCC
Q 018636 22 VVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~ 43 (352)
|+|+|+||+|||||+++|+|..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999754
No 370
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.97 E-value=0.00035 Score=54.29 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57999999999999999999875
No 371
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0017 Score=57.97 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|.|.|++|+|||+|.++|++..
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh
Confidence 579999999999999999998753
No 372
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.93 E-value=0.0004 Score=56.78 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..++|+|+||+|||||++.|++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999854
No 373
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.93 E-value=0.00044 Score=54.29 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
-|+|+|++|+|||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999754
No 374
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.92 E-value=0.00038 Score=59.35 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||++.|+|...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999987643
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.91 E-value=0.00053 Score=58.08 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.....|+|+|.+|||||||++.|.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455799999999999999999998654
No 376
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.88 E-value=0.0029 Score=62.92 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..++|+|+||+|||||++.| |-.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 478999999999999999999 654
No 377
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.88 E-value=0.00053 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 378
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.88 E-value=0.00015 Score=65.14 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.++|+|+||+|||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998843
No 379
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.88 E-value=0.00039 Score=67.19 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=26.2
Q ss_pred CCCCCccCCCCCCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..+..+. ..+..++|+|+||+|||||++.|+|.
T Consensus 597 vlndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 597 IANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeccccc---CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34444444 34578999999999999999999875
No 380
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.86 E-value=0.00049 Score=60.48 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q 018636 21 TVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~ 40 (352)
.++|+|+||+|||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999986
No 381
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.86 E-value=0.0012 Score=52.26 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=56.7
Q ss_pred HHHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhccc---ccceEEEEEeCC-CCCCc-chhcHHHHhcccCC
Q 018636 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN---VFDYMIVVFTGG-DDLED-HEKTLEDFLGHECP 166 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~ilv~nk~-D~~~~-~~~~l~~~l~~~~~ 166 (352)
.++.+...+|.+.|++|||+|.+++-....+..+..+..++..+ ...|++|+.||. |.... ....+.+.+.
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~---- 189 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH---- 189 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT----
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC----
Confidence 34444556677899999999987331111333333233333221 122888888985 56544 1123333332
Q ss_pred hhHHHHHHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHH
Q 018636 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (352)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~ 208 (352)
+.. ....+++ ..+||.++.|+.+-++++...+
T Consensus 190 --L~~----l~R~W~I----q~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 190 --LNL----LNHPWLV----QDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp --GGG----GCSCEEE----EEEETTTCTTHHHHHHHHTTTT
T ss_pred --CcC----CCCCEEE----EEeECCCCcCHHHHHHHHHHHH
Confidence 111 1233443 3568889999999999987654
No 382
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.85 E-value=0.00045 Score=55.24 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|.+||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 383
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.82 E-value=0.00072 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+..|+|+|.+||||||+.+.|+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999973
No 384
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.81 E-value=0.0049 Score=52.52 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=51.7
Q ss_pred cccCCccEEEEEEecCCCC-CHHH-HHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhc
Q 018636 99 MAKDGIHAFLVVFSVTNRF-SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (352)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (352)
.++.++|++++|+|++++. +... ..++..+.. .+ .|++||+||+|+... ..+++ ...+....
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-~~----~piilv~NK~DL~~~--~~v~~---------~~~~~~~~ 143 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-NE----LETVMVINKMDLYDE--DDLRK---------VRELEEIY 143 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-TT----CEEEEEECCGGGCCH--HHHHH---------HHHHHHHH
T ss_pred cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-CC----CCEEEEEeHHHcCCc--hhHHH---------HHHHHHHH
Confidence 3567999999999998543 4332 233443332 12 289999999998754 33211 11122222
Q ss_pred C--CcEEEEcCCCcccccchHHHHHHHHHHH
Q 018636 177 D--NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (352)
Q Consensus 177 ~--~~~~~~~~~~~~sa~~~~~~~~L~~~i~ 205 (352)
. ..+ ..+||+++.++.+++..+.
T Consensus 144 ~~~~~~------~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 144 SGLYPI------VKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp TTTSCE------EECCTTTCTTHHHHHHHHS
T ss_pred hhhCcE------EEEECCCCcCHHHHHHHhc
Confidence 2 222 2568888999999987643
No 385
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.80 E-value=0.00051 Score=57.08 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHhhCCC
Q 018636 22 VVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~ 43 (352)
|+|+|++|+|||||+++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998753
No 386
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.78 E-value=0.00072 Score=52.34 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|.+||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999743
No 387
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.78 E-value=0.00054 Score=56.65 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999764
No 388
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.75 E-value=0.00052 Score=65.95 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..++|+|+||+|||||++.|+|-.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4689999999999999999998754
No 389
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.75 E-value=0.0067 Score=51.69 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=49.7
Q ss_pred ccCCccEEEEEEecCCC-CCHHHH-HHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 100 AKDGIHAFLVVFSVTNR-FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 100 ~~~~~~~~l~v~~~~~~-~~~~~~-~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
.+.++|++++|+|++++ ++.... .++..+.. .+ .|.++|+||+|+.+. ..+. .... +.......+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~~----~~~ilV~NK~DL~~~--~~v~-~~~~-----~~~~~~~~g 142 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-FK----VEPVIVFNKIDLLNE--EEKK-ELER-----WISIYRDAG 142 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-TT----CEEEEEECCGGGCCH--HHHH-HHHH-----HHHHHHHTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-CC----CCEEEEEEcccCCCc--cccH-HHHH-----HHHHHHHCC
Confidence 45789999999999844 455432 33333332 22 289999999999754 3211 0111 222333333
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSL 203 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~ 203 (352)
..++ .+||+++.++++|++.
T Consensus 143 ~~~~------~~SA~~g~gi~~L~~~ 162 (302)
T 2yv5_A 143 YDVL------KVSAKTGEGIDELVDY 162 (302)
T ss_dssp CEEE------ECCTTTCTTHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHhh
Confidence 3332 4567777788887765
No 390
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.73 E-value=0.00057 Score=65.27 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
+..++|+|+||||||||+++|+
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 4789999999999999998764
No 391
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.0012 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|+|.+||||||+.+.|.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997653
No 392
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.73 E-value=0.0094 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=18.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHh
Q 018636 17 NGERTVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l 39 (352)
.....|+|+|..|+||||+.-.|
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nL 61 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNL 61 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHH
Confidence 34578899999999999987555
No 393
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.71 E-value=0.00073 Score=59.36 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|++|+|||||+++|+|.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999863
No 394
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.71 E-value=0.00062 Score=59.11 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..++|+|+||+|||||+++|+|..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998764
No 395
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.69 E-value=0.0012 Score=51.88 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999754
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.67 E-value=0.00071 Score=57.07 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHhhCCC
Q 018636 22 VVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~ 43 (352)
|+|+|++|+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999998753
No 397
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.67 E-value=0.00097 Score=51.71 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHh
Q 018636 20 RTVVLLGRTGNGKSATGNSI 39 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l 39 (352)
..|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 398
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.67 E-value=0.002 Score=56.69 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=58.6
Q ss_pred HHHHHhcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHH
Q 018636 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (352)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (352)
+.+.+...+.+.+++++|+|+++ +.. .+...+...++. +|+++|+||+|+... ....+.+.. .+...
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d-~~~---s~~~~l~~~l~~---~piilV~NK~DLl~~--~~~~~~~~~----~l~~~ 127 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFD-FNG---SFIPGLPRFAAD---NPILLVGNKADLLPR--SVKYPKLLR----WMRRM 127 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTC-SGG---GCCSSHHHHCTT---SCEEEEEECGGGSCT--TCCHHHHHH----HHHHH
T ss_pred HHHHHHHhhccCcEEEEEEECCC-CCC---chhhHHHHHhCC---CCEEEEEEChhcCCC--ccCHHHHHH----HHHHH
Confidence 44444444457789999999983 322 222333343442 389999999999855 221111111 12223
Q ss_pred HHhcCCcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 173 ~~~~~~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
....+.+. ......||.++.++.+|++.+.+...
T Consensus 128 ~~~~g~~~---~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCP---VDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCC---SEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCc---ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 44444320 01124688899999999999987653
No 399
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.65 E-value=0.0013 Score=52.92 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..+..|+|+|..||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999743
No 400
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.65 E-value=0.0012 Score=52.76 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
...+|+|+||+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999874
No 401
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.63 E-value=0.0011 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 402
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.63 E-value=0.0012 Score=52.56 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3478999999999999999999854
No 403
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.62 E-value=0.0011 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999754
No 404
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.62 E-value=0.00096 Score=54.87 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..++|+|++|+|||||+..|++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999874
No 405
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.62 E-value=0.0012 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999975
No 406
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.61 E-value=0.0013 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999754
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.59 E-value=0.001 Score=53.77 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
+..++|+|++|+|||||++.|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 408
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.57 E-value=0.00067 Score=62.72 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..|+|+|.+|||||||+++|++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457899999999999999999998754
No 409
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.56 E-value=0.0011 Score=57.91 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.++|+|+||+|||||+++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 889999999999999999974
No 410
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.56 E-value=0.0014 Score=50.37 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
...|+|+|.+|+|||||++.|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 411
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.54 E-value=0.015 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|.|++|+|||+|+++|+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999753
No 412
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.54 E-value=0.0014 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
No 413
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.53 E-value=0.0015 Score=51.64 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
No 414
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.52 E-value=0.0021 Score=51.26 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHhhC
Q 018636 17 NGERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.....|+|+|.+||||||+.+.|+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999974
No 415
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.51 E-value=0.0011 Score=55.90 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.+..++|+|+||+|||||+..|++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998863
No 416
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.50 E-value=0.0016 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+..|+|+|.+||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
No 417
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.49 E-value=0.0012 Score=59.51 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
+..++|+|+||+|||||+++|.+-.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 3678999999999999999997643
No 418
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.48 E-value=0.0018 Score=54.85 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|+|++|||||||.+.|+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 419
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.47 E-value=0.0014 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+|+|+|.+||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999743
No 420
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.47 E-value=0.0018 Score=51.60 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|..||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 421
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.44 E-value=0.0018 Score=56.34 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
...+|+|+||+|||||+.+|.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999874
No 422
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.44 E-value=0.0017 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.43 E-value=0.0021 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 424
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.42 E-value=0.002 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999753
No 425
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.41 E-value=0.0013 Score=60.88 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHH--hhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNS--ILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~--l~g~ 42 (352)
.+..++|+|+||||||||++. +.|.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999 4554
No 426
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.41 E-value=0.0017 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|.+||||||+.+.|.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 427
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.40 E-value=0.0017 Score=50.68 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
...|+|+|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 428
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.39 E-value=0.0014 Score=56.50 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q 018636 21 TVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~ 40 (352)
..+|+|+||+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 78999999999999999997
No 429
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.39 E-value=0.0024 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|+|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
No 430
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.38 E-value=0.0019 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|+|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
No 431
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.38 E-value=0.002 Score=53.50 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 36899999999999999999753
No 432
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.37 E-value=0.0021 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998863
No 433
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.37 E-value=0.0053 Score=51.70 Aligned_cols=88 Identities=7% Similarity=0.090 Sum_probs=53.5
Q ss_pred hcccCCccEEEEEEecCCCCCHHHHHHHHHHHHhhcccccceEEEEEeCCCCCCcchhcHHHHhcccCChhHHHHHHhcC
Q 018636 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (352)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ilv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (352)
......+|+++.|+|+..+.+...... ...++. +|.++|+||+|+.+. ...+.++. .+...+
T Consensus 18 ~~~l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~~---kp~ilVlNK~DL~~~--~~~~~~~~---------~~~~~g 79 (282)
T 1puj_A 18 TEKLKLIDIVYELVDARIPMSSRNPMI----EDILKN---KPRIMLLNKADKADA--AVTQQWKE---------HFENQG 79 (282)
T ss_dssp HHHGGGCSEEEEEEETTSTTTTSCHHH----HHHCSS---SCEEEEEECGGGSCH--HHHHHHHH---------HHHTTT
T ss_pred HHHHhhCCEEEEEEeCCCCCccCCHHH----HHHHCC---CCEEEEEECcccCCH--HHHHHHHH---------HHHhcC
Confidence 334457899999999986555432222 122232 289999999999864 43333222 222223
Q ss_pred CcEEEEcCCCcccccchHHHHHHHHHHHHHHH
Q 018636 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (352)
Q Consensus 178 ~~~~~~~~~~~~sa~~~~~~~~L~~~i~~~~~ 209 (352)
..++ ..|+.++.++.+|++.+.+.+.
T Consensus 80 ~~~i------~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 80 IRSL------SINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp CCEE------ECCTTTCTTGGGHHHHHHHHHH
T ss_pred CcEE------EEECCCcccHHHHHHHHHHHHH
Confidence 2333 3466677888888887777654
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.36 E-value=0.0018 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
.+..|+|+|.+||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
No 435
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.36 E-value=0.0019 Score=52.05 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
+|+|+|.+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
No 436
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.35 E-value=0.022 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.++|+|++|+|||||++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998654
No 437
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.32 E-value=0.0025 Score=52.00 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..|+|.|.+||||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998654
No 438
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.31 E-value=0.0022 Score=51.76 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
+|+|+|.+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 439
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.29 E-value=0.016 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|.|++|+|||||+++|++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999754
No 440
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.29 E-value=0.0019 Score=56.37 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|+||+|||||++.|++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998764
No 441
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.28 E-value=0.0025 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|+|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 442
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.27 E-value=0.0072 Score=49.27 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.++|.|++|+|||||++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 443
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.26 E-value=0.002 Score=53.49 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
....|+|+|.+||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999999754
No 444
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.24 E-value=0.001 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 445
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.23 E-value=0.0024 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 446
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.23 E-value=0.0027 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 447
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.20 E-value=0.0027 Score=51.04 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|..||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
No 448
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.18 E-value=0.0025 Score=51.63 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999964
No 449
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.16 E-value=0.0028 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
No 450
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.11 E-value=0.0024 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|+|||||+++|++.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
No 451
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.10 E-value=0.032 Score=47.93 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|.|++|+|||+|.++|+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999999864
No 452
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.10 E-value=0.0032 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.|+|.|..||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 453
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.10 E-value=0.003 Score=50.86 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 454
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.09 E-value=0.0042 Score=48.87 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
No 455
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.08 E-value=0.0039 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
No 456
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.07 E-value=0.0042 Score=51.12 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...+|+|+|.+||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999963
No 457
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.07 E-value=0.0025 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=16.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
No 458
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.07 E-value=0.003 Score=48.79 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 459
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.06 E-value=0.0034 Score=49.48 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.|+|+|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 460
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.04 E-value=0.004 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 461
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.04 E-value=0.04 Score=44.01 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=37.2
Q ss_pred CceEEEEeCCCC-CCCCCCcHHHHHHHHHHHhcccCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhcccccceEEEEEe
Q 018636 68 GQVVNVIDTPGL-FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFT 145 (352)
Q Consensus 68 ~~~~~lvDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ilv~n 145 (352)
...+.|+|||+. ... .....+ ..+|.+++++..+ ..+... ...++.+....+ .++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~l----~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~~----~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEALA----DGCDLLVIPSTPD-ALALDALMLTIETLQKLGN----NRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHHH----HTSSEEEEEECSS-HHHHHHHHHHHHHHHHTCS----SSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHHH----HHCCEEEEEecCC-chhHHHHHHHHHHHHhccC----CCEEEEEE
Confidence 456789999986 431 111112 2568888888776 222111 223333433212 26789999
Q ss_pred CCCCCC
Q 018636 146 GGDDLE 151 (352)
Q Consensus 146 k~D~~~ 151 (352)
+.|...
T Consensus 129 ~~~~~~ 134 (209)
T 3cwq_A 129 IIPPYP 134 (209)
T ss_dssp SBCCTT
T ss_pred ecCCcc
Confidence 998664
No 462
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.04 E-value=0.0039 Score=49.27 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|+|..||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999864
No 463
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.03 E-value=0.0031 Score=49.37 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 464
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.01 E-value=0.0038 Score=50.68 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 465
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.97 E-value=0.02 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.-|+|.|++|+|||+|.++|++..
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999754
No 466
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.94 E-value=0.0038 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999964
No 467
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.94 E-value=0.0045 Score=47.62 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|..||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
No 468
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.89 E-value=0.014 Score=56.62 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
...++|+|++|+||||+++.|+...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998643
No 469
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.88 E-value=0.0052 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (352)
....|+|.|..||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
No 470
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.87 E-value=0.0061 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHhh
Q 018636 18 GERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~ 40 (352)
....|+|+|..||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999997
No 471
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.85 E-value=0.011 Score=51.96 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
.++|.|++|+||||+++.++..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998753
No 472
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.81 E-value=0.0059 Score=47.75 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|+|||||++.++..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998754
No 473
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.80 E-value=0.0063 Score=47.85 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+..|+|+|++|+|||||...|+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999754
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.73 E-value=0.0044 Score=57.29 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCCc
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (352)
.+..++|+|+||+|||||++.|+|...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999987643
No 475
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.72 E-value=0.0059 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 018636 21 TVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (352)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999965
No 476
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.043 Score=46.85 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
....+.|.|++|+|||++++.++...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999998654
No 477
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.71 E-value=0.006 Score=53.69 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhh
Q 018636 20 RTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (352)
...+|+|+||+||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 567899999999999998873
No 478
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.69 E-value=0.0063 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+|+|+|++||||+|....|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
No 479
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.67 E-value=0.0077 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..|+|+|++|+|||||...|+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998654
No 480
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.63 E-value=0.0072 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
....|+|+|.+|+||||+.+.|++..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34579999999999999999987653
No 481
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.62 E-value=0.0068 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..|.|.|++|+|||+|+++|....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998643
No 482
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.62 E-value=0.0069 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
...|+|.|++|+|||||++.|....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999997543
No 483
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.61 E-value=0.0049 Score=60.40 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
+..++|+|.||+|||||++.|+
T Consensus 668 GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 668 GVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3799999999999999999864
No 484
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.59 E-value=0.008 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
..|+|+|++|+|||||...|+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 578999999999999999997543
No 485
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.57 E-value=0.046 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|.|++|+|||+|+++|+..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999754
No 486
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.54 E-value=0.006 Score=56.56 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
.+..++|+|++|+|||||+++|++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998654
No 487
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.53 E-value=0.0076 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhh
Q 018636 19 ERTVVLLGRTGNGKSATGNSIL 40 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~ 40 (352)
+..++|+|++|+|||||+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3588999999999999976554
No 488
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.51 E-value=0.0047 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=17.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (352)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 489
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.49 E-value=0.0067 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|.|++|+|||||+++|++.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 57999999999999999999864
No 490
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.47 E-value=0.0085 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|||||||...|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 491
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.47 E-value=0.0096 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|.|+|++||||+|....|+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999998743
No 492
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.47 E-value=0.0069 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
...|+|+|++|+|||||++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998754
No 493
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.46 E-value=0.011 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|+|||||...|+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 57899999999999999999744
No 494
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.46 E-value=0.0098 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhhCCC
Q 018636 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
...|+|+|++|+|||||.++|++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3579999999999999999998653
No 495
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.44 E-value=0.0086 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|+|++|||||||...|+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 57999999999999999988743
No 496
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.39 E-value=0.0036 Score=60.66 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHH-hhC
Q 018636 19 ERTVVLLGRTGNGKSATGNS-ILG 41 (352)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~-l~g 41 (352)
+..++|+|.||+|||||++. |+|
T Consensus 523 Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 523 GVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp SSEEEEECCTTSSHHHHCCCCCHH
T ss_pred CCEEEEEcCCCcCHHHHHHHHHHH
Confidence 47999999999999999996 653
No 497
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.37 E-value=0.0077 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 018636 20 RTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
..|+|.|++|+|||||+++|++.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 498
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.36 E-value=0.0096 Score=48.60 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=22.2
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHhhCC
Q 018636 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGR 42 (352)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (352)
+......+..|+|.|..||||||+++.|...
T Consensus 20 ~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 20 FQSNAMNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp ------CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444445679999999999999999999754
No 499
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.36 E-value=0.0095 Score=50.66 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 018636 20 RTVVLLGRTGNGKSATGNSILG 41 (352)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (352)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 500
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.34 E-value=0.0066 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCC
Q 018636 21 TVVLLGRTGNGKSATGNSILGRK 43 (352)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~ 43 (352)
-|+|+|++|+|||||+++|++..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999998753
Done!