Query 018637
Match_columns 352
No_of_seqs 212 out of 1269
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 3.4E-60 7.5E-65 461.7 25.1 252 87-344 132-398 (408)
2 PLN03133 beta-1,3-galactosyltr 100.0 1.6E-54 3.6E-59 443.9 24.4 248 89-344 380-635 (636)
3 KOG2288 Galactosyltransferases 100.0 2.9E-54 6.4E-59 392.4 18.5 259 91-352 8-273 (274)
4 KOG2287 Galactosyltransferases 100.0 1.4E-52 3E-57 410.1 23.3 242 93-342 94-346 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 4.1E-49 8.9E-54 356.0 17.3 189 108-303 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 2.5E-34 5.4E-39 276.9 17.1 216 89-322 75-345 (382)
7 PF02434 Fringe: Fringe-like; 99.9 2.1E-21 4.5E-26 182.4 11.4 191 94-307 6-207 (252)
8 KOG2246 Galactosyltransferases 99.8 1.3E-17 2.9E-22 163.6 16.7 174 88-304 85-270 (364)
9 PLN03153 hypothetical protein; 99.5 3.8E-12 8.2E-17 128.0 20.7 181 92-308 120-318 (537)
10 KOG3708 Uncharacterized conser 97.6 0.0003 6.5E-09 71.0 10.1 154 95-298 27-188 (681)
11 PF01755 Glyco_transf_25: Glyc 96.1 0.12 2.6E-06 46.2 12.4 93 98-206 4-101 (200)
12 TIGR03469 HonB hopene-associat 95.9 1.4 3.1E-05 43.7 20.2 159 134-297 71-249 (384)
13 PF13641 Glyco_tranf_2_3: Glyc 95.9 0.14 3.1E-06 45.9 12.0 188 95-302 2-202 (228)
14 PF13506 Glyco_transf_21: Glyc 95.6 0.068 1.5E-06 47.5 8.5 121 176-303 17-147 (175)
15 TIGR03472 HpnI hopanoid biosyn 94.9 1.3 2.8E-05 43.9 16.1 162 134-301 71-244 (373)
16 PRK11204 N-glycosyltransferase 94.9 4.6 9.9E-05 40.3 20.4 152 138-301 87-251 (420)
17 cd04186 GT_2_like_c Subfamily 94.6 1.7 3.7E-05 36.2 14.1 84 189-302 73-157 (166)
18 cd02520 Glucosylceramide_synth 94.6 2.9 6.2E-05 36.9 16.1 137 134-302 31-169 (196)
19 cd06532 Glyco_transf_25 Glycos 93.8 0.46 1E-05 39.8 8.8 115 98-274 2-117 (128)
20 cd04192 GT_2_like_e Subfamily 93.8 3.4 7.4E-05 36.6 15.0 158 134-297 29-195 (229)
21 PF04646 DUF604: Protein of un 93.5 0.078 1.7E-06 49.7 3.7 54 256-309 12-68 (255)
22 cd06421 CESA_CelA_like CESA_Ce 93.2 1 2.3E-05 40.2 10.7 115 183-301 77-202 (234)
23 cd02510 pp-GalNAc-T pp-GalNAc- 92.9 8.4 0.00018 36.5 17.0 162 134-301 31-216 (299)
24 PF00535 Glycos_transf_2: Glyc 92.6 1.6 3.4E-05 36.1 10.3 155 97-270 3-168 (169)
25 PRK14583 hmsR N-glycosyltransf 91.9 9.9 0.00021 38.5 16.9 155 133-301 104-272 (444)
26 cd06435 CESA_NdvC_like NdvC_li 91.6 7.2 0.00016 35.0 14.2 159 133-302 28-201 (236)
27 cd02526 GT2_RfbF_like RfbF is 91.6 5.7 0.00012 35.6 13.5 139 159-301 46-195 (237)
28 cd04196 GT_2_like_d Subfamily 91.0 6.6 0.00014 34.3 13.0 155 133-296 27-190 (214)
29 cd06420 GT2_Chondriotin_Pol_N 90.5 6.6 0.00014 33.5 12.3 100 182-301 71-171 (182)
30 cd06433 GT_2_WfgS_like WfgS an 90.4 9.5 0.00021 32.6 13.2 117 180-301 65-185 (202)
31 cd06434 GT2_HAS Hyaluronan syn 90.4 2.3 5E-05 38.2 9.6 156 134-301 29-204 (235)
32 cd04185 GT_2_like_b Subfamily 90.2 4.3 9.4E-05 35.5 11.0 94 179-299 69-163 (202)
33 cd04187 DPM1_like_bac Bacteria 90.1 2.3 5.1E-05 36.6 9.1 135 133-273 29-165 (181)
34 cd04191 Glucan_BSP_ModH Glucan 89.6 6.4 0.00014 37.0 12.1 194 98-301 3-222 (254)
35 cd06423 CESA_like CESA_like is 89.2 3.5 7.7E-05 33.9 9.2 92 180-271 68-170 (180)
36 cd02525 Succinoglycan_BP_ExoA 88.7 17 0.00037 32.4 19.8 160 133-302 31-200 (249)
37 cd04184 GT2_RfbC_Mx_like Myxoc 88.1 17 0.00036 31.6 18.0 157 133-302 31-193 (202)
38 TIGR03030 CelA cellulose synth 87.6 17 0.00037 39.4 15.3 121 173-300 212-348 (713)
39 cd06427 CESA_like_2 CESA_like_ 87.1 23 0.0005 32.1 15.5 119 180-302 74-204 (241)
40 COG1215 Glycosyltransferases, 85.7 13 0.00029 36.8 12.5 187 94-302 54-257 (439)
41 cd04179 DPM_DPG-synthase_like 84.7 5.3 0.00012 34.1 8.1 130 134-271 29-167 (185)
42 PF13632 Glyco_trans_2_3: Glyc 84.5 4.3 9.3E-05 35.4 7.5 105 193-301 1-115 (193)
43 cd04195 GT2_AmsE_like GT2_AmsE 84.0 27 0.00059 30.2 14.0 112 182-301 72-192 (201)
44 TIGR01556 rhamnosyltran L-rham 83.7 21 0.00046 33.3 12.2 137 158-300 43-191 (281)
45 cd06438 EpsO_like EpsO protein 82.8 15 0.00032 31.8 10.1 77 189-269 80-169 (183)
46 PRK11498 bcsA cellulose syntha 82.3 49 0.0011 36.8 15.8 118 176-300 326-459 (852)
47 cd06439 CESA_like_1 CESA_like_ 72.9 72 0.0016 28.7 18.3 114 181-301 100-220 (251)
48 COG1216 Predicted glycosyltran 72.6 90 0.0019 29.7 16.7 139 159-301 55-211 (305)
49 cd02522 GT_2_like_a GT_2_like_ 71.7 69 0.0015 28.0 14.3 104 187-300 69-177 (221)
50 PLN02726 dolichyl-phosphate be 71.1 81 0.0018 28.6 14.7 158 133-302 40-210 (243)
51 cd06442 DPM1_like DPM1_like re 70.5 74 0.0016 27.9 13.5 82 189-271 77-167 (224)
52 PRK10714 undecaprenyl phosphat 69.6 97 0.0021 30.0 12.7 134 133-273 38-175 (325)
53 cd06437 CESA_CaSu_A2 Cellulose 69.4 84 0.0018 28.0 16.8 114 181-302 78-205 (232)
54 PF10111 Glyco_tranf_2_2: Glyc 68.0 95 0.0021 29.2 12.0 162 132-299 33-211 (281)
55 cd00761 Glyco_tranf_GTA_type G 67.1 60 0.0013 25.5 11.8 83 181-296 68-151 (156)
56 PRK14716 bacteriophage N4 adso 66.6 53 0.0011 34.2 10.6 146 147-301 109-280 (504)
57 cd04190 Chitin_synth_C C-termi 57.2 22 0.00048 32.6 5.4 112 189-300 72-210 (244)
58 TIGR03111 glyc2_xrt_Gpos1 puta 56.5 2.1E+02 0.0046 28.8 12.8 114 181-298 122-255 (439)
59 cd04188 DPG_synthase DPG_synth 55.1 1.1E+02 0.0024 26.8 9.4 159 133-302 30-200 (211)
60 cd02514 GT13_GLCNAC-TI GT13_GL 53.4 1.1E+02 0.0023 30.2 9.7 80 181-270 88-174 (334)
61 PF12606 RELT: Tumour necrosis 52.1 32 0.0007 24.3 4.2 34 22-57 2-35 (50)
62 PRK05454 glucosyltransferase M 47.6 1.9E+02 0.0041 31.5 11.2 198 92-301 122-347 (691)
63 PTZ00260 dolichyl-phosphate be 43.8 3.1E+02 0.0068 26.6 16.4 198 91-301 67-283 (333)
64 PF13704 Glyco_tranf_2_4: Glyc 42.4 1.1E+02 0.0024 23.4 6.6 48 159-207 40-88 (97)
65 PHA03164 hypothetical protein; 42.4 25 0.00054 27.0 2.6 20 19-38 56-76 (88)
66 PF03672 UPF0154: Uncharacteri 36.1 35 0.00075 25.4 2.4 20 23-42 1-21 (64)
67 PHA01631 hypothetical protein 34.0 1.3E+02 0.0028 26.7 6.1 92 159-273 39-133 (176)
68 PF08114 PMP1_2: ATPase proteo 32.6 45 0.00097 22.5 2.3 23 22-44 9-31 (43)
69 COG4092 Predicted glycosyltran 32.0 1.6E+02 0.0034 28.5 6.6 79 132-213 37-117 (346)
70 PF05777 Acp26Ab: Drosophila a 31.6 37 0.0008 26.3 2.0 20 21-40 1-20 (90)
71 KOG2547 Ceramide glucosyltrans 31.5 3.2E+02 0.0069 27.6 8.9 93 133-231 114-209 (431)
72 PF05212 DUF707: Protein of un 29.6 5.2E+02 0.011 25.1 9.8 107 190-302 116-245 (294)
73 PF15048 OSTbeta: Organic solu 28.9 57 0.0012 27.5 2.8 27 16-42 32-58 (125)
74 PF07423 DUF1510: Protein of u 28.1 32 0.00069 31.8 1.4 28 11-38 2-29 (217)
75 PRK10018 putative glycosyl tra 27.0 5.4E+02 0.012 24.3 12.3 33 183-215 78-110 (279)
76 PF12273 RCR: Chitin synthesis 26.5 77 0.0017 26.5 3.4 20 23-42 4-23 (130)
77 PF03452 Anp1: Anp1; InterPro 25.2 3.2E+02 0.007 26.1 7.6 84 132-216 55-168 (269)
78 COG3763 Uncharacterized protei 25.2 64 0.0014 24.4 2.3 16 24-39 9-25 (71)
79 cd06913 beta3GnTL1_like Beta 1 24.8 4.7E+02 0.01 22.8 11.9 43 183-225 77-119 (219)
80 PRK14740 kdbF potassium-transp 24.0 1.2E+02 0.0027 18.8 3.0 26 22-47 2-27 (29)
81 PRK11234 nfrB bacteriophage N4 23.1 1E+03 0.022 26.1 16.3 156 134-299 94-275 (727)
82 PLN02893 Cellulose synthase-li 22.6 2.9E+02 0.0062 30.3 7.4 26 188-213 296-322 (734)
83 KOG2859 DNA repair protein, me 22.1 2E+02 0.0044 27.0 5.4 52 159-214 37-95 (293)
84 PF09258 Glyco_transf_64: Glyc 22.0 1.3E+02 0.0029 28.1 4.4 110 189-301 74-189 (247)
85 PRK01844 hypothetical protein; 20.5 89 0.0019 23.8 2.3 16 24-39 9-25 (72)
86 cd06436 GlcNAc-1-P_transferase 20.1 1.2E+02 0.0027 26.3 3.6 75 191-270 90-178 (191)
87 PF07092 DUF1356: Protein of u 20.1 45 0.00097 31.3 0.7 31 16-47 69-99 (238)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.4e-60 Score=461.71 Aligned_cols=252 Identities=37% Similarity=0.700 Sum_probs=220.9
Q ss_pred CCCCCCCeeEEEEEeCCCCCHHHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCC--ChHHHHHHHHHHhhCCCEEE
Q 018637 87 NNIKRHKVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTN--DQSKMAELRKEVAEYDDFIL 164 (352)
Q Consensus 87 ~~~~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~--~~~~~~~l~~E~~~y~DIl~ 164 (352)
+...+++++++|+|+|+++|++||++||+|||+.... +.+++...+++++|++|++. +...+.+|++|+++|||||+
T Consensus 132 ~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~-~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~ 210 (408)
T PLN03193 132 QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEK-RKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLR 210 (408)
T ss_pred CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCccc-ccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEE
Confidence 3455778999999999999999999999999997532 33444567899999999987 45788999999999999999
Q ss_pred ecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCCCCCcccccc
Q 018637 165 LDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQS 244 (352)
Q Consensus 165 ~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwyv~~~ 244 (352)
+||.|+|.|||+||+++|+|+.++++++||||+|||+|||+++|+.+|+.....+++|+|+++.+|+ |++.++||.+++
T Consensus 211 lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPv-r~~~~~ky~epe 289 (408)
T PLN03193 211 LDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPV-LSQKGVRYHEPE 289 (408)
T ss_pred EecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCcc-ccCCCCcCcCcc
Confidence 9999999999999999999999999999999999999999999999998776666799999988898 665555555445
Q ss_pred cc----CCCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEeeCCcccc---cCCCCC----
Q 018637 245 YL----LGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDNRELCQ---SDCTSS---- 313 (352)
Q Consensus 245 ~y----~~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~~~~f~~---~~c~~~---- 313 (352)
+| +++.|||||+|+|||||+|+|+.|+.. ...++.+.+|||++|+||..++|+++|+++||+ +.|+..
T Consensus 290 ~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n-~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~ 368 (408)
T PLN03193 290 YWKFGENGNKYFRHATGQLYAISKDLASYISIN-QHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAG 368 (408)
T ss_pred cccccCccccCCCCCCcceEEehHHHHHHHHhC-hhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCC
Confidence 55 679999999999999999999999865 468889999999999999999999999999997 679743
Q ss_pred --eEEEeccCCCCCCCchhHHhhhccccccccC
Q 018637 314 --FIAVWDIPKCSGLCNPEKRLLELHQQESCSK 344 (352)
Q Consensus 314 --~~~~~~~~~~~~~c~~~~~l~~~h~~~~c~~ 344 (352)
-+++|++ +|++.|.+..+|.++|+ .|.+
T Consensus 369 ~~c~~~~~~-~csg~c~~~~~~~~~h~--~c~~ 398 (408)
T PLN03193 369 NICVASFDW-SCSGICRSADRIKEVHR--RCGE 398 (408)
T ss_pred CeeEEEecc-cCcccCCHHHHHHHHHH--hcCC
Confidence 3899999 89999999999999995 4644
No 2
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.6e-54 Score=443.87 Aligned_cols=248 Identities=25% Similarity=0.428 Sum_probs=214.2
Q ss_pred CCCCCeeEEEEEeCCCCCHHHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHHHhhCCCEEEeccc
Q 018637 89 IKRHKVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIE 168 (352)
Q Consensus 89 ~~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~ 168 (352)
.+..+++|||+|+|+|+|++||+|||+|||+... ..+..++++|++|.+.++..+.+|++|+++||||||+||.
T Consensus 380 ~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~------~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 380 SPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA------VRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCCceEEEEEEeCCcccHHHHHHHHHhhccccc------cCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeee
Confidence 4457899999999999999999999999999642 1235689999999999888899999999999999999999
Q ss_pred ccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEec--CCccccCCCCCcccccccc
Q 018637 169 EEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMK--KGPVFTDPHLKWYEPQSYL 246 (352)
Q Consensus 169 D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~--~~pv~rd~~~Kwyv~~~~y 246 (352)
|+|+|||+||++++.|+.+|++++|+||+|||+|||+++|+++|+.....+.+|+|++. ..|+ |++.+|||+|.++|
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~Pi-Rd~~sKWYVs~~ey 532 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPH-RNPDSKWYISPEEW 532 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcc-cCCCCCCCCCHHHC
Confidence 99999999999999999999999999999999999999999999876666779999985 3455 99999999999999
Q ss_pred CCCCCCCCCcCCeeeecHHHHHHHHHhh-CcCCCCCCcchHHHHHHHHh---CC--CcEeeCCcccccCCCCCeEEEecc
Q 018637 247 LGKEYFLHAYGPLYALSADVVVSLVALK-NNSFRMFSNEDVTIGSWMLA---MN--VNHEDNRELCQSDCTSSFIAVWDI 320 (352)
Q Consensus 247 ~~~~yP~y~~G~gYvlS~~lv~~l~~~~-~~~~~~~~~EDv~iG~~l~~---lg--V~~~~~~~f~~~~c~~~~~~~~~~ 320 (352)
|.+.|||||+|+|||||+++|+.|+.+. ...++++++||||+|+|+++ .| +.+.++.+||..+|..+.+.+|.+
T Consensus 533 p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~H~~ 612 (636)
T PLN03133 533 PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVAHYQ 612 (636)
T ss_pred CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEEecC
Confidence 9999999999999999999999999753 35789999999999999874 34 456777889999999776555444
Q ss_pred CCCCCCCchhHHhhhccccccccC
Q 018637 321 PKCSGLCNPEKRLLELHQQESCSK 344 (352)
Q Consensus 321 ~~~~~~c~~~~~l~~~h~~~~c~~ 344 (352)
.-..+.|. .+++..-++..||..
T Consensus 613 sP~eM~~l-W~~l~~~~~~~Cc~~ 635 (636)
T PLN03133 613 SPREMLCL-WQKLQEGKRATCCGE 635 (636)
T ss_pred CHHHHHHH-HHHHhccCCCCccCC
Confidence 22367788 556777777888863
No 3
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-54 Score=392.42 Aligned_cols=259 Identities=47% Similarity=0.780 Sum_probs=240.4
Q ss_pred CCCeeEEEEEeCCCCCHHHHHHHHHHhcCCCccchhhhhccCCeEEEEEeec-CCChHHHHHHHHHHhhCCCEEEec-cc
Q 018637 91 RHKVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGR-TNDQSKMAELRKEVAEYDDFILLD-IE 168 (352)
Q Consensus 91 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~-~~~~~~~~~l~~E~~~y~DIl~~d-~~ 168 (352)
+++++++|+|.|++++.+||+++|+||++.. +++.+++++.+|.++|++|. +.....+.+|++|.++|+|++.+| ..
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~-~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSG-EGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCc-cchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 6899999999999999999999999999984 46788888899999999999 556778999999999999999999 99
Q ss_pred ccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCCCCCccccccccCC
Q 018637 169 EEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQSYLLG 248 (352)
Q Consensus 169 D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwyv~~~~y~~ 248 (352)
|+|.+|+.||+++|.++..+++++|++|+|||+|||++.|...|++++.++++|+|||+++||+.++++|||+|+ ++-+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999988889999999999999999999999999 4444
Q ss_pred CC--CCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEeeCCcccccCC---CCCeEEEeccCCC
Q 018637 249 KE--YFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDNRELCQSDC---TSSFIAVWDIPKC 323 (352)
Q Consensus 249 ~~--yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~~~~f~~~~c---~~~~~~~~~~~~~ 323 (352)
+. |.+|+.|+||+||++++..|.. +.+.++.+..|||.+|.||..++|+++|++++|+..| .....++|..++|
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~i-n~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~~~~~~kc 244 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISI-NRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCAASFDWKC 244 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHH-hHHHHHhhccCCcccceeeeeeeeeEecCCcccccchhhhccceeeeeecccc
Confidence 44 9999999999999999999964 4567899999999999999999999999999999999 4567899999999
Q ss_pred CCCCchhHHhhhccccccccCCCCCCCCC
Q 018637 324 SGLCNPEKRLLELHQQESCSKSPTMVSDD 352 (352)
Q Consensus 324 ~~~c~~~~~l~~~h~~~~c~~~~~~~~~~ 352 (352)
+++|.+..+|+++|....|++++++.+++
T Consensus 245 sglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 245 SGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred cccCchHHHHhHHHHhhccCCCcccCccc
Confidence 99999999999999999999999988763
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-52 Score=410.06 Aligned_cols=242 Identities=25% Similarity=0.389 Sum_probs=209.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCCh-HHHHHHHHHHhhCCCEEEecccccC
Q 018637 93 KVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQ-SKMAELRKEVAEYDDFILLDIEEEY 171 (352)
Q Consensus 93 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~-~~~~~l~~E~~~y~DIl~~d~~D~y 171 (352)
.+++|++|+|+++|++||++||+|||++.. ..+.+++++|++|.+.++ ..+..|.+|++.||||||+||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~------v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN------VRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc------cCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccch
Confidence 389999999999999999999999999864 246789999999999875 3578999999999999999999999
Q ss_pred CCcchHHHHHHHhhhh-cCCcceEEEeCCceeeChHHHHHHHhhc-CCCCCcEEEEec-CCccccCCCCCccccccccCC
Q 018637 172 SKLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDRLSLLLAKE-RPHSQTYLGCMK-KGPVFTDPHLKWYEPQSYLLG 248 (352)
Q Consensus 172 ~nLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~-~~~~~~y~G~~~-~~pv~rd~~~Kwyv~~~~y~~ 248 (352)
.|||+||+++++|+.. |++++|++|+|||+|||+++|+.+|.+. .+.+.+|.|++. ..+++|++.+|||||+++||.
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~~ 247 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEYPC 247 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHCCC
Confidence 9999999999999987 8999999999999999999999999998 788899999984 345559999999999999999
Q ss_pred CCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhC-CCcEeeCCccc------ccCCCCCeEEEeccC
Q 018637 249 KEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAM-NVNHEDNRELC------QSDCTSSFIAVWDIP 321 (352)
Q Consensus 249 ~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~l-gV~~~~~~~f~------~~~c~~~~~~~~~~~ 321 (352)
+.|||||+|+|||+|+++|++|+++ +.+.+.+++|||++|+|+++. ||.+.+...+. +..|..+.+++|...
T Consensus 248 ~~YP~Y~sG~gYvis~~~a~~l~~~-s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~ 326 (349)
T KOG2287|consen 248 SVYPPYASGPGYVISGDAARRLLKA-SKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLSFDPCCYRDLLAVHRLS 326 (349)
T ss_pred CCCCCcCCCceeEecHHHHHHHHHH-hcCCCccchHHHHHHHHHHHhcCCCcccCcccccccccCCCCcccceEEEecCC
Confidence 9999999999999999999999996 589999999999999999987 99999987643 345666778877774
Q ss_pred CCCCCCchhHHhhhccccccc
Q 018637 322 KCSGLCNPEKRLLELHQQESC 342 (352)
Q Consensus 322 ~~~~~c~~~~~l~~~h~~~~c 342 (352)
.....|. .+.+....+..||
T Consensus 327 p~e~~~~-w~~~~~~~~~~c~ 346 (349)
T KOG2287|consen 327 PNEMIYL-WKKLKDLANLKCK 346 (349)
T ss_pred HHHHHHH-HHHhhcccccccc
Confidence 3456677 3333333344444
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=4.1e-49 Score=356.00 Aligned_cols=189 Identities=30% Similarity=0.494 Sum_probs=168.8
Q ss_pred HHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCC--ChHHHHHHHHHHhhCCCEEEecccccCCCcchHHHHHHHhh
Q 018637 108 GRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTN--DQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAA 185 (352)
Q Consensus 108 ~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~--~~~~~~~l~~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~ 185 (352)
+||++||+||++.... ...+++++|++|.+. +...+..|++|+++|+||||+||.|+|.|||+||+++|+|+
T Consensus 1 ~rR~~IR~TW~~~~~~------~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~ 74 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNF------KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWA 74 (195)
T ss_pred ChHHHHHHHHhccccc------CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHH
Confidence 5899999999998642 347899999999998 66778889999999999999999999999999999999999
Q ss_pred hh-cCCcceEEEeCCceeeChHHHHHHHhhc--CCCCCc-EEEEecCCccccCCCCCccccccccCCCCCCCCCcCCeee
Q 018637 186 YA-LYDSEFYVKADDDIYLRPDRLSLLLAKE--RPHSQT-YLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYA 261 (352)
Q Consensus 186 ~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~~-y~G~~~~~pv~rd~~~Kwyv~~~~y~~~~yP~y~~G~gYv 261 (352)
.+ |++++|++|+|||+|||+++|.++|... ....+. |++++..+++.|++.+|||+|.++|+.+.|||||+|+||+
T Consensus 75 ~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yv 154 (195)
T PF01762_consen 75 SKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYV 154 (195)
T ss_pred HhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEE
Confidence 87 6679999999999999999999999986 333344 4444556566699999999999999999999999999999
Q ss_pred ecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEeeCC
Q 018637 262 LSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDNR 303 (352)
Q Consensus 262 lS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~~~ 303 (352)
||+++|+.|+.++ ..++.+++|||++|+|+.++||+++|++
T Consensus 155 ls~~~v~~i~~~~-~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 155 LSSDVVKRIYKAS-SHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred ecHHHHHHHHHHh-hcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999874 7789999999999999999999999864
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=2.5e-34 Score=276.91 Aligned_cols=216 Identities=19% Similarity=0.221 Sum_probs=167.9
Q ss_pred CCCCCeeEEEEEeCCCCC--HHHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCCh--HHHHHHHHHHhhCCCEEE
Q 018637 89 IKRHKVMGFVGIQTGFGS--GGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQ--SKMAELRKEVAEYDDFIL 164 (352)
Q Consensus 89 ~~~~~~~lli~V~S~~~~--~~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~--~~~~~l~~E~~~y~DIl~ 164 (352)
..+++..++++|.|..++ +.||+++|+||.+....+-....=...+.++|++|...+. +.+++|++|+++|||||+
T Consensus 75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi 154 (382)
T PTZ00210 75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT 154 (382)
T ss_pred hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence 567889999999999987 8999999999999864321111002346778999999877 789999999999999999
Q ss_pred ecc------------------cccCCCcchHHHHHHHhhhh-cCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEE
Q 018637 165 LDI------------------EEEYSKLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGC 225 (352)
Q Consensus 165 ~d~------------------~D~y~nLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~ 225 (352)
+|| .|++.|+|+||+++++|+.+ |++++|++|+|||+|||+++++++|+.. ++..+|+|.
T Consensus 155 lpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~ 233 (382)
T PTZ00210 155 LPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGR 233 (382)
T ss_pred EecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEe
Confidence 999 77778899999999999998 7799999999999999999999999764 556799999
Q ss_pred ecC--CccccCCCCCccccccccCCCCCCCCCcCCeeeecHHHHHHHHHhhC-cCC---------------CCCCcchHH
Q 018637 226 MKK--GPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLVALKN-NSF---------------RMFSNEDVT 287 (352)
Q Consensus 226 ~~~--~pv~rd~~~Kwyv~~~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~~~-~~~---------------~~~~~EDv~ 287 (352)
+.. .|. |+ .+||||+|+||+||+|+|+.|++... ..+ -.+..||+.
T Consensus 234 v~~~~~p~-Rd---------------~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiM 297 (382)
T PTZ00210 234 YNYYNRIW-RR---------------NQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVM 297 (382)
T ss_pred eCCCCccc-cC---------------CCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHH
Confidence 753 222 33 25999999999999999999997521 122 347899999
Q ss_pred HHHHHHh-CC---CcEeeCCcccc------cCC----CCCeEEEeccCC
Q 018637 288 IGSWMLA-MN---VNHEDNRELCQ------SDC----TSSFIAVWDIPK 322 (352)
Q Consensus 288 iG~~l~~-lg---V~~~~~~~f~~------~~c----~~~~~~~~~~~~ 322 (352)
+|.+|+. ++ +-.++. +.|. ..| +.+++.+|++..
T Consensus 298 vG~vLr~~~k~~~l~~V~~-~~c~Fhd~~~~~~~~~v~~~sVvvHhike 345 (382)
T PTZ00210 298 VGMILREKVVYRNLISVEM-GRCHFHNAGKFGVRKSVRNMSVVIHHIQE 345 (382)
T ss_pred HHHHHHHhcCcCceeeecc-ccccceecCCCCCccccccceEEEEecCH
Confidence 9999954 43 222222 2232 223 356788888854
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.86 E-value=2.1e-21 Score=182.39 Aligned_cols=191 Identities=18% Similarity=0.248 Sum_probs=101.4
Q ss_pred eeEEEEEeCCCCCHHHH-HHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCC
Q 018637 94 VMGFVGIQTGFGSGGRR-RSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYS 172 (352)
Q Consensus 94 ~~lli~V~S~~~~~~rR-~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~ 172 (352)
-+++|+|+|++++.+.| .+|++||++.++ .+ .|+.....+.. |..+ ...+++.-++.+.+.
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~----------~~--~~ifsd~~d~~----l~~~--~~~~l~~~~~~~~~~ 67 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN----------KQ--TFIFSDAEDPS----LPTV--TGVHLVNPNCDAGHC 67 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG----------GG--EEEEESS--HH----HHHH--HGGGEEE--------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC----------Cc--eEEecCccccc----cccc--cccccccCCCcchhh
Confidence 36899999999866555 899999999874 12 34433333322 2222 234666677777766
Q ss_pred CcchHHHHHHHhhhh-cCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEec-CCccccCCCCCccccccccCCCC
Q 018637 173 KLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMK-KGPVFTDPHLKWYEPQSYLLGKE 250 (352)
Q Consensus 173 nLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~-~~pv~rd~~~Kwyv~~~~y~~~~ 250 (352)
..+++.++.+.+... ..+++|++++|||+||++++|.++|...++.+++|+|+.. ..|. .... + ..+ ..-....
T Consensus 68 ~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~-~~~~-~-~~~-~~~~~~~ 143 (252)
T PF02434_consen 68 RKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPI-EIIH-R-FNP-NKSKDSG 143 (252)
T ss_dssp -----HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccc-eeec-c-ccc-cccCcCc
Confidence 666666666665443 4688999999999999999999999999999999999863 3332 1100 0 000 0000112
Q ss_pred CCCCC-cCCeeeecHHHHHHHHHhh--CcCCCC----CCcchHHHHHHHHh-CCCcEeeCCcccc
Q 018637 251 YFLHA-YGPLYALSADVVVSLVALK--NNSFRM----FSNEDVTIGSWMLA-MNVNHEDNRELCQ 307 (352)
Q Consensus 251 yP~y~-~G~gYvlS~~lv~~l~~~~--~~~~~~----~~~EDv~iG~~l~~-lgV~~~~~~~f~~ 307 (352)
| .|+ +|+||+||+.++++|.... ...... -..||+.||.|+.. +||+.++.+.|++
T Consensus 144 ~-~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs 207 (252)
T PF02434_consen 144 F-WFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHS 207 (252)
T ss_dssp ---EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---
T ss_pred e-EeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcc
Confidence 2 356 6799999999999995321 122222 34899999999998 8999999999886
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.3e-17 Score=163.63 Aligned_cols=174 Identities=24% Similarity=0.328 Sum_probs=135.0
Q ss_pred CCCCCCeeEEEEEeCCCCCHHHH-HHHHHHhcCCCccchhhhhccCCeEEEEEe---ecCCChHHHHHHHHHHhhCCCEE
Q 018637 88 NIKRHKVMGFVGIQTGFGSGGRR-RSLRMTWMPSDHQGLQQLEEATGLAFRFII---GRTNDQSKMAELRKEVAEYDDFI 163 (352)
Q Consensus 88 ~~~~~~~~lli~V~S~~~~~~rR-~aIR~TW~~~~~~~l~~l~~~~~v~~~Fvl---G~~~~~~~~~~l~~E~~~y~DIl 163 (352)
.....+..++++|+|.+.+..-| +++-+||++.++ +..|+- .+... .+ ..|
T Consensus 85 ~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------------~~~f~s~~~s~~~~------------~f-~~v 139 (364)
T KOG2246|consen 85 LWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------------KGIFFSPTLSKDDS------------RF-PTV 139 (364)
T ss_pred hccCCCceEEEEEEecCcCceeehhhhhcccccccC------------cceecCccCCCCCC------------cC-cee
Confidence 35567899999999999877666 699999999985 223443 32211 11 234
Q ss_pred EecccccCCCcchHHHHHHHhhhh--cCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCCCCCccc
Q 018637 164 LLDIEEEYSKLPYKTLAFFKAAYA--LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYE 241 (352)
Q Consensus 164 ~~d~~D~y~nLt~Ktl~~l~w~~~--~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwyv 241 (352)
..+..|+|+++..||..+++++.. ..+++|++|+|||||+.++||..+|...++++++|+|+....-.
T Consensus 140 ~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~---------- 209 (364)
T KOG2246|consen 140 YYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYF---------- 209 (364)
T ss_pred eccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccccc----------
Confidence 788999999999999999999985 36999999999999999999999999999999999998632111
Q ss_pred cccccCCCCCCCCCcCCeeeecHHHHHHHHHhh----CcCCCCC--CcchHHHHHHHHhCCCcEeeCCc
Q 018637 242 PQSYLLGKEYFLHAYGPLYALSADVVVSLVALK----NNSFRMF--SNEDVTIGSWMLAMNVNHEDNRE 304 (352)
Q Consensus 242 ~~~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~~----~~~~~~~--~~EDv~iG~~l~~lgV~~~~~~~ 304 (352)
.+.| -.+|+||++|+++.+.+++.. ..+.... ..||..||.||+.+||.+.|.+.
T Consensus 210 ------~~~y--~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~d 270 (364)
T KOG2246|consen 210 ------QNGY--SSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDERD 270 (364)
T ss_pred ------cccc--ccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCchh
Confidence 0111 136899999999999987642 1233334 39999999999999999999744
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.48 E-value=3.8e-12 Score=127.99 Aligned_cols=181 Identities=18% Similarity=0.252 Sum_probs=117.1
Q ss_pred CCeeEEEEEeCCCCCH-HHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHHHhhCCCE--EEeccc
Q 018637 92 HKVMGFVGIQTGFGSG-GRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDF--ILLDIE 168 (352)
Q Consensus 92 ~~~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DI--l~~d~~ 168 (352)
.--.++++|.+..+.. +|+..|+.+|.+... =.++|+.....+... -.++ +.+...
T Consensus 120 ~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~-----------rg~v~ld~~~~~~~~----------~~~~P~i~is~d 178 (537)
T PLN03153 120 SLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM-----------RGHVWLEEQVSPEEG----------DDSLPPIMVSED 178 (537)
T ss_pred ccccEEEEEEEchhhhhhhhhhhhhhcCcccc-----------eeEEEecccCCCCCC----------cCCCCCEEeCCC
Confidence 3446889999888765 566899999997531 034565544322100 0111 222111
Q ss_pred cc---CCC---cchHHHH---HHHhhhh--cCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCCCC
Q 018637 169 EE---YSK---LPYKTLA---FFKAAYA--LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHL 237 (352)
Q Consensus 169 D~---y~n---Lt~Ktl~---~l~w~~~--~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~ 237 (352)
.+ |.| ... .+. +...+.. .++++|++++|||+|+.++||+..|...+++++.|+|..... . +.+.
T Consensus 179 ~s~f~y~~~~Gh~s-a~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~-~--~qn~ 254 (537)
T PLN03153 179 TSRFRYTNPTGHPS-GLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES-H--SANS 254 (537)
T ss_pred cccccccCCCCcHH-HHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc-c--cccc
Confidence 11 333 222 221 2332332 589999999999999999999999999999999999976321 0 0000
Q ss_pred CccccccccCCCCCCCCC-cCCeeeecHHHHHHHHHhhCcCCC---CCCcchHHHHHHHHhCCCcEeeCCccccc
Q 018637 238 KWYEPQSYLLGKEYFLHA-YGPLYALSADVVVSLVALKNNSFR---MFSNEDVTIGSWMLAMNVNHEDNRELCQS 308 (352)
Q Consensus 238 Kwyv~~~~y~~~~yP~y~-~G~gYvlS~~lv~~l~~~~~~~~~---~~~~EDv~iG~~l~~lgV~~~~~~~f~~~ 308 (352)
.+ .| .|+ +|+||+||+.+++.|......... ...-+|.-||.|+..+||.+++.++|.|-
T Consensus 255 ~f----------~~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~ 318 (537)
T PLN03153 255 YF----------SH-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQW 318 (537)
T ss_pred cc----------cc-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccc
Confidence 00 01 134 799999999999998764222322 23468999999999999999999999983
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0003 Score=70.98 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=102.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCCCc
Q 018637 95 MGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKL 174 (352)
Q Consensus 95 ~lli~V~S~~~~~~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~nL 174 (352)
+++++|+|.. .---+|-+|-+.+-+ ++.|+.+.+.-. .|.-+....-.|..-
T Consensus 27 rl~~aVmte~---tlA~a~NrT~ahhvp------------rv~~F~~~~~i~-------------~~~a~~~~vs~~d~r 78 (681)
T KOG3708|consen 27 RLMAAVMTES---TLALAINRTLAHHVP------------RVHLFADSSRID-------------NDLAQLTNVSPYDLR 78 (681)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhhcc------------eeEEeecccccc-------------ccHhhccccCccccC
Confidence 4668888822 455688888887643 455666654321 233333333334333
Q ss_pred chHHH-HHHHhhhh--cCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEe-cCCccccCCCCCccccccccCCCC
Q 018637 175 PYKTL-AFFKAAYA--LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCM-KKGPVFTDPHLKWYEPQSYLLGKE 250 (352)
Q Consensus 175 t~Ktl-~~l~w~~~--~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~-~~~pv~rd~~~Kwyv~~~~y~~~~ 250 (352)
..|+. +.++++.+ +.+++|++-+-||+|||...|++++.....+.++|+|.- ..+. .
T Consensus 79 ~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~gs-------------------~ 139 (681)
T KOG3708|consen 79 GQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDGS-------------------G 139 (681)
T ss_pred ccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhCcc-------------------C
Confidence 44444 45666665 358999999999999999999999988888899999952 1111 1
Q ss_pred CCCCC-cCCeeeecHHHHHHHHHhhCcCCC--CCCcchHHHHHHHHh-CCCc
Q 018637 251 YFLHA-YGPLYALSADVVVSLVALKNNSFR--MFSNEDVTIGSWMLA-MNVN 298 (352)
Q Consensus 251 yP~y~-~G~gYvlS~~lv~~l~~~~~~~~~--~~~~EDv~iG~~l~~-lgV~ 298 (352)
- | .|.||+||+.++.+|-..-..+.. .-.=+|+.+|.|+.. .||.
T Consensus 140 r---C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~ 188 (681)
T KOG3708|consen 140 R---CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVG 188 (681)
T ss_pred c---cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCC
Confidence 1 6 489999999999999653212222 334678999999975 4665
No 11
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.08 E-value=0.12 Score=46.20 Aligned_cols=93 Identities=16% Similarity=0.216 Sum_probs=52.6
Q ss_pred EEEeCCCCCHHHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHHHhhCCCEEEe-----cccccCC
Q 018637 98 VGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILL-----DIEEEYS 172 (352)
Q Consensus 98 i~V~S~~~~~~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~-----d~~D~y~ 172 (352)
|.|.|-+...+||+.+.+..... ++.+.|+-|.....-...++..+ ++.-... ...-+--
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~------------~~~~e~~~Avdg~~l~~~~~~~~---~~~~~~~~~~~~~lt~gEi 68 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL------------GINFEFFDAVDGRDLSEDELFRR---YDPELFKKRYGRPLTPGEI 68 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------------CCceEEEEeecccccchHHHHHH---hhhhhhhccccccCCcceE
Confidence 56777888899999998877654 34567777765432222111111 1111000 0111111
Q ss_pred CcchHHHHHHHhhhhcCCcceEEEeCCceeeChH
Q 018637 173 KLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPD 206 (352)
Q Consensus 173 nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~ 206 (352)
.=++-.+..++.+.+ .+.++.+-..||++++.+
T Consensus 69 GC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 69 GCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred eehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 123455556666554 367999999999999955
No 12
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.89 E-value=1.4 Score=43.73 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=83.5
Q ss_pred eEEEEEeecCCChHHHHHHHHHHhhCC---CEEEecccccCCCcchHHH---HHHHhhhh-cCCcceEEEeCCceeeChH
Q 018637 134 LAFRFIIGRTNDQSKMAELRKEVAEYD---DFILLDIEEEYSKLPYKTL---AFFKAAYA-LYDSEFYVKADDDIYLRPD 206 (352)
Q Consensus 134 v~~~FvlG~~~~~~~~~~l~~E~~~y~---DIl~~d~~D~y~nLt~Ktl---~~l~w~~~-~~~~~fvlK~DDD~fVn~~ 206 (352)
..+++|...+.|... +.+++-.+++. .+..+...+.-.+-..|.. .+++.+.. ..+.+|++.+|+|+.+.++
T Consensus 71 ~eIIVVDd~StD~T~-~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~ 149 (384)
T TIGR03469 71 LHVILVDDHSTDGTA-DIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPD 149 (384)
T ss_pred eEEEEEeCCCCCcHH-HHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChh
Confidence 566777766665432 22222223343 4544443332223345533 35555443 3458999999999999999
Q ss_pred HHHHHHhhcCC-CCCcEEEEecCCccccCCCCCccccc------cccC------CCCCCCCCcCCeeeecHHHHHHHHHh
Q 018637 207 RLSLLLAKERP-HSQTYLGCMKKGPVFTDPHLKWYEPQ------SYLL------GKEYFLHAYGPLYALSADVVVSLVAL 273 (352)
Q Consensus 207 ~L~~~L~~~~~-~~~~y~G~~~~~pv~rd~~~Kwyv~~------~~y~------~~~yP~y~~G~gYvlS~~lv~~l~~~ 273 (352)
.|.+.+..... ...+..|...... .....+...+. ..|+ ......++.|++.++++++.+++--.
T Consensus 150 ~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf 227 (384)
T TIGR03469 150 NLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGI 227 (384)
T ss_pred HHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHHHHHHHHHHhcchhhhcCCCccceeecceEEEEEHHHHHHcCCH
Confidence 98888866432 2233222221100 00000000000 0000 01122346799999999999988432
Q ss_pred hCcCCCCCCcchHHHHHHHHhCCC
Q 018637 274 KNNSFRMFSNEDVTIGSWMLAMNV 297 (352)
Q Consensus 274 ~~~~~~~~~~EDv~iG~~l~~lgV 297 (352)
. .......||+.++.-+++.|-
T Consensus 228 ~--~~~~~~~ED~~L~~r~~~~G~ 249 (384)
T TIGR03469 228 A--AIRGALIDDCTLAAAVKRSGG 249 (384)
T ss_pred H--HHhhCcccHHHHHHHHHHcCC
Confidence 1 122234899999999988763
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.87 E-value=0.14 Score=45.94 Aligned_cols=188 Identities=16% Similarity=0.074 Sum_probs=86.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHHHhhCCCE--EEecccccCC
Q 018637 95 MGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDF--ILLDIEEEYS 172 (352)
Q Consensus 95 ~lli~V~S~~~~~~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DI--l~~d~~D~y~ 172 (352)
.+.|+|.+.-....-++.|+.--... ...+.++++...+.++ ..+.+++-.+.+++. -.+... .
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~----------~~~~~v~vvd~~~~~~-~~~~~~~~~~~~~~~~v~vi~~~---~ 67 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD----------YPRLEVVVVDDGSDDE-TAEILRALAARYPRVRVRVIRRP---R 67 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH----------HHTEEEEEEEE-SSS--GCTTHHHHHHTTGG-GEEEEE------
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC----------CCCeEEEEEECCCChH-HHHHHHHHHHHcCCCceEEeecC---C
Confidence 35566665444334445555544321 1235666665444333 223344444556542 222221 2
Q ss_pred Cc--chHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhc-CCCCCcEEEEecCCc---cc----cCCCCCcccc
Q 018637 173 KL--PYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKE-RPHSQTYLGCMKKGP---VF----TDPHLKWYEP 242 (352)
Q Consensus 173 nL--t~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~-~~~~~~y~G~~~~~p---v~----rd~~~Kwyv~ 242 (352)
|. +.|.- .++++.+..+.+|++.+|||+.+.++.|..++... .+.-....|.....+ .. +.....|+..
T Consensus 68 ~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (228)
T PF13641_consen 68 NPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLR 146 (228)
T ss_dssp -HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTT
T ss_pred CCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhh
Confidence 22 23433 34555554579999999999999999888887765 333333334331101 00 0000111111
Q ss_pred ccccCCCCC-CCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEeeC
Q 018637 243 QSYLLGKEY-FLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDN 302 (352)
Q Consensus 243 ~~~y~~~~y-P~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~~ 302 (352)
.... ...+ ..++.|++.++.+++++.+-... . ....||..++.-+.+.|.+..-.
T Consensus 147 ~~~~-~~~~~~~~~~G~~~~~rr~~~~~~g~fd-~---~~~~eD~~l~~r~~~~G~~~~~~ 202 (228)
T PF13641_consen 147 FRSG-RRALGVAFLSGSGMLFRRSALEEVGGFD-P---FILGEDFDLCLRLRAAGWRIVYA 202 (228)
T ss_dssp S-TT--B----S-B--TEEEEEHHHHHHH-S---S---SSSSHHHHHHHHHHHTT--EEEE
T ss_pred hhhh-hcccceeeccCcEEEEEHHHHHHhCCCC-C---CCcccHHHHHHHHHHCCCcEEEE
Confidence 0000 0111 14467999999999999885332 2 44469999999999888876663
No 14
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=95.59 E-value=0.068 Score=47.45 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=77.2
Q ss_pred hHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcC-CCCCcEEEEecCCccccCCCCCc------cc---cccc
Q 018637 176 YKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKER-PHSQTYLGCMKKGPVFTDPHLKW------YE---PQSY 245 (352)
Q Consensus 176 ~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~~y~G~~~~~pv~rd~~~Kw------yv---~~~~ 245 (352)
.|+-.....+....+.++++-.|+|+.|+++-|.+.+.... +.-.+..| + |......+-| ++ +.-
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~-~---~~~~~~~~~~~~l~~~~~~~~~~~- 91 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTG-L---PRGVPARGFWSRLEAAFFNFLPGV- 91 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEe-c---ccccCCcCHHHHHHHHHHhHHHHH-
Confidence 67666665544446899999999999999999998887653 22222222 1 1111111111 11 000
Q ss_pred cCCCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEeeCC
Q 018637 246 LLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDNR 303 (352)
Q Consensus 246 y~~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~~~ 303 (352)
+..-.-.+++.|+.+++.+++++.+--. ..+...--||..+|..+.+.|.+..-.+
T Consensus 92 ~~a~~~~~~~~G~~m~~rr~~L~~~GG~--~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 92 LQALGGAPFAWGGSMAFRREALEEIGGF--EALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred HHHhcCCCceecceeeeEHHHHHHcccH--HHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 0001235789999999999999988322 2233456999999999999998877753
No 15
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.94 E-value=1.3 Score=43.88 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=87.5
Q ss_pred eEEEEEeecCCChHHHHHHHHHHhhCCC--EEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHH
Q 018637 134 LAFRFIIGRTNDQSKMAELRKEVAEYDD--FILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLL 211 (352)
Q Consensus 134 v~~~FvlG~~~~~~~~~~l~~E~~~y~D--Il~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~ 211 (352)
+.++++...++|... +.+++=.++|.+ +..+.-.+ -.....|.-...+ +.+..+.+|++.+|+|+.+.++.|.+.
T Consensus 71 ~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~~~~-~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~l 147 (373)
T TIGR03472 71 FQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVIDAR-RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQV 147 (373)
T ss_pred eEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEECCC-CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHH
Confidence 567777666555432 233333455665 32231111 1222356655444 344568999999999999999999888
Q ss_pred HhhcC-CCCCcEEEEecCCccccCC--------CCCccccccccC-CCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCC
Q 018637 212 LAKER-PHSQTYLGCMKKGPVFTDP--------HLKWYEPQSYLL-GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMF 281 (352)
Q Consensus 212 L~~~~-~~~~~y~G~~~~~pv~rd~--------~~Kwyv~~~~y~-~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~ 281 (352)
+.... ++-.+..|.....+. ... ..-++.|..... ...-+.+|.|..+++.+++.+.+-... .....
T Consensus 148 v~~~~~~~v~~V~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~--~~~~~ 224 (373)
T TIGR03472 148 VAPLADPDVGLVTCLYRGRPV-PGFWSRLGAMGINHNFLPSVMVARALGRARFCFGATMALRRATLEAIGGLA--ALAHH 224 (373)
T ss_pred HHHhcCCCcceEeccccCCCC-CCHHHHHHHHHhhhhhhHHHHHHHhccCCccccChhhheeHHHHHHcCChH--Hhccc
Confidence 77653 221222221111110 000 001122110000 001134588999999999999885331 12223
Q ss_pred CcchHHHHHHHHhCCCcEee
Q 018637 282 SNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 282 ~~EDv~iG~~l~~lgV~~~~ 301 (352)
-.||+.+|.-+.+.|.+..-
T Consensus 225 ~~ED~~l~~~i~~~G~~v~~ 244 (373)
T TIGR03472 225 LADDYWLGELVRALGLRVVL 244 (373)
T ss_pred chHHHHHHHHHHHcCCeEEe
Confidence 36999999999888866544
No 16
>PRK11204 N-glycosyltransferase; Provisional
Probab=94.90 E-value=4.6 Score=40.28 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=83.9
Q ss_pred EEeecCCChHHHHHHHHHHhhCCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCC
Q 018637 138 FIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERP 217 (352)
Q Consensus 138 FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~ 217 (352)
+|+....+++..+.+++..+++..+..++..++ . .|. .+++.+.+..+.+|++..|+|..+.++.|.+.++....
T Consensus 87 iVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n---~-Gka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 87 IAINDGSSDNTGEILDRLAAQIPRLRVIHLAEN---Q-GKA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred EEEECCCCccHHHHHHHHHHhCCcEEEEEcCCC---C-CHH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 344433333344555555666666766554433 2 343 34455555568999999999999999988888876532
Q ss_pred CCCcEEEEecCCccccCCCCCccccc--cccCC---------C--CCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcc
Q 018637 218 HSQTYLGCMKKGPVFTDPHLKWYEPQ--SYLLG---------K--EYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNE 284 (352)
Q Consensus 218 ~~~~y~G~~~~~pv~rd~~~Kwyv~~--~~y~~---------~--~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~E 284 (352)
++++ |.+...+..++..+ |.... .+|.. . ......+|.+.++.+++++.+--.. ...-.|
T Consensus 162 ~~~v--~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~----~~~~~E 234 (420)
T PRK11204 162 NPRV--GAVTGNPRIRNRST-LLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS----TDMITE 234 (420)
T ss_pred CCCe--EEEECCceeccchh-HHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC----CCcccc
Confidence 2222 33322121121110 10000 00000 0 1122347888999999998763211 223479
Q ss_pred hHHHHHHHHhCCCcEee
Q 018637 285 DVTIGSWMLAMNVNHED 301 (352)
Q Consensus 285 Dv~iG~~l~~lgV~~~~ 301 (352)
|+-++.-+.+.|.+..-
T Consensus 235 D~~l~~rl~~~G~~i~~ 251 (420)
T PRK11204 235 DIDISWKLQLRGWDIRY 251 (420)
T ss_pred hHHHHHHHHHcCCeEEe
Confidence 99999988888866444
No 17
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.63 E-value=1.7 Score=36.17 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=58.0
Q ss_pred CCcceEEEeCCceeeChHHHHHHHhhcCCCCCc-EEEEecCCccccCCCCCccccccccCCCCCCCCCcCCeeeecHHHH
Q 018637 189 YDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT-YLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYALSADVV 267 (352)
Q Consensus 189 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~-y~G~~~~~pv~rd~~~Kwyv~~~~y~~~~yP~y~~G~gYvlS~~lv 267 (352)
.+.+|++..|||..+.++.+...+......+.. .++.. +.|++.+++++++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~ 124 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK----------------------------VSGAFLLVRREVF 124 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc----------------------------CceeeEeeeHHHH
Confidence 389999999999999998888887643222221 11111 6689999999999
Q ss_pred HHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEeeC
Q 018637 268 VSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDN 302 (352)
Q Consensus 268 ~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~~ 302 (352)
+.+-... .... ...||..+..-+...|.+....
T Consensus 125 ~~~~~~~-~~~~-~~~eD~~~~~~~~~~g~~i~~~ 157 (166)
T cd04186 125 EEVGGFD-EDFF-LYYEDVDLCLRARLAGYRVLYV 157 (166)
T ss_pred HHcCCCC-hhhh-ccccHHHHHHHHHHcCCeEEEc
Confidence 8773221 1111 2679999998887778776654
No 18
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.58 E-value=2.9 Score=36.85 Aligned_cols=137 Identities=22% Similarity=0.278 Sum_probs=82.1
Q ss_pred eEEEEEeecCCChHHHHHHHHHHhhCC--CEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHH
Q 018637 134 LAFRFIIGRTNDQSKMAELRKEVAEYD--DFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLL 211 (352)
Q Consensus 134 v~~~FvlG~~~~~~~~~~l~~E~~~y~--DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~ 211 (352)
+.+++|...+.+.. .+.+++-.+.|. ++.......+ .....|.- .+..+.+....+|++..|+|+.+.++.|..+
T Consensus 31 ~eiivVdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l 107 (196)
T cd02520 31 YEILFCVQDEDDPA-IPVVRKLIAKYPNVDARLLIGGEK-VGINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLRRM 107 (196)
T ss_pred eEEEEEeCCCcchH-HHHHHHHHHHCCCCcEEEEecCCc-CCCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHHHH
Confidence 56777776665543 334444445555 3322221111 11223433 2344444567899999999999998888887
Q ss_pred HhhcCCCCCcEEEEecCCccccCCCCCccccccccCCCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHH
Q 018637 212 LAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSW 291 (352)
Q Consensus 212 L~~~~~~~~~y~G~~~~~pv~rd~~~Kwyv~~~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~ 291 (352)
+.... .+. +|.+.. + ++.|++.++.+++.+.+-... .......||..++.-
T Consensus 108 ~~~~~-~~~--~~~v~~----~--------------------~~~g~~~~~r~~~~~~~ggf~--~~~~~~~eD~~l~~r 158 (196)
T cd02520 108 VAPLM-DPG--VGLVTC----L--------------------CAFGKSMALRREVLDAIGGFE--AFADYLAEDYFLGKL 158 (196)
T ss_pred HHHhh-CCC--CCeEEe----e--------------------cccCceeeeEHHHHHhccChH--HHhHHHHHHHHHHHH
Confidence 76532 111 122211 0 567999999999999874321 122234799999999
Q ss_pred HHhCCCcEeeC
Q 018637 292 MLAMNVNHEDN 302 (352)
Q Consensus 292 l~~lgV~~~~~ 302 (352)
+.+.|.+....
T Consensus 159 l~~~G~~i~~~ 169 (196)
T cd02520 159 IWRLGYRVVLS 169 (196)
T ss_pred HHHcCCeEEEc
Confidence 98888766553
No 19
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=93.82 E-value=0.46 Score=39.75 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=66.0
Q ss_pred EEEeCCCCCHHHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHHHhhCCCE-EEecccccCCCcch
Q 018637 98 VGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDF-ILLDIEEEYSKLPY 176 (352)
Q Consensus 98 i~V~S~~~~~~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DI-l~~d~~D~y~nLt~ 176 (352)
+.|.+-+...+||+.+++..... ++.+.|+-|..........+......+... ......-+.-.-.+
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~------------~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL------------GLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------------CCCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 45677788899999999855443 345667777654322222222221110000 00011111111123
Q ss_pred HHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCCCCCccccccccCCCCCCCCCc
Q 018637 177 KTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAY 256 (352)
Q Consensus 177 Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwyv~~~~y~~~~yP~y~~ 256 (352)
..+..++.+.+ .+.++.+-..||+.+..+ +
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------~ 99 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------G 99 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC-------------------------------------------------C
Confidence 33444444443 366899999999998866 4
Q ss_pred CCeeeecHHHHHHHHHhh
Q 018637 257 GPLYALSADVVVSLVALK 274 (352)
Q Consensus 257 G~gYvlS~~lv~~l~~~~ 274 (352)
..||++|++.|++|++..
T Consensus 100 ~~~Y~vs~~~A~~ll~~~ 117 (128)
T cd06532 100 TAGYLVSRKGAKKLLAAL 117 (128)
T ss_pred ceEEEeCHHHHHHHHHhC
Confidence 568999999999999753
No 20
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.78 E-value=3.4 Score=36.58 Aligned_cols=158 Identities=12% Similarity=0.070 Sum_probs=81.7
Q ss_pred eEEEEEeecCCChHHHHHHH-HHHhhCCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHH
Q 018637 134 LAFRFIIGRTNDQSKMAELR-KEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (352)
Q Consensus 134 v~~~FvlG~~~~~~~~~~l~-~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L 212 (352)
+.++.|.+.+.+. ..+.++ .....+..+..+...+. .| ..|. .+++++.+....+|++.+|+|..+.++.|..++
T Consensus 29 ~eiivvdd~s~d~-t~~~~~~~~~~~~~~v~~~~~~~~-~~-~g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~ 104 (229)
T cd04192 29 FEVILVDDHSTDG-TVQILEFAAAKPNFQLKILNNSRV-SI-SGKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFV 104 (229)
T ss_pred eEEEEEcCCCCcC-hHHHHHHHHhCCCcceEEeeccCc-cc-chhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHH
Confidence 5666666555443 233343 22222334555554432 22 2333 234555555678999999999999988888888
Q ss_pred hhcC-CCCCcEEEEecCCcc---ccC-CCCCccccc---cccCCCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcc
Q 018637 213 AKER-PHSQTYLGCMKKGPV---FTD-PHLKWYEPQ---SYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNE 284 (352)
Q Consensus 213 ~~~~-~~~~~y~G~~~~~pv---~rd-~~~Kwyv~~---~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~E 284 (352)
.... .....+.|.....+. ... ....+.... .......++..+.|.++++++++.+.+-.. ........|
T Consensus 105 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf--~~~~~~~~e 182 (229)
T cd04192 105 AFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGF--EGNDHIASG 182 (229)
T ss_pred HHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCC--ccccccccC
Confidence 7543 233344454321100 000 000000000 001122345566799999999999988432 122334567
Q ss_pred hHHHHHHHHhCCC
Q 018637 285 DVTIGSWMLAMNV 297 (352)
Q Consensus 285 Dv~iG~~l~~lgV 297 (352)
|..++.-+...|-
T Consensus 183 D~~~~~~~~~~g~ 195 (229)
T cd04192 183 DDELLLAKVASKY 195 (229)
T ss_pred CHHHHHHHHHhCC
Confidence 8777765544444
No 21
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=93.48 E-value=0.078 Score=49.73 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=43.2
Q ss_pred cCCeeeecHHHHHHHHHhhCcCC---CCCCcchHHHHHHHHhCCCcEeeCCcccccC
Q 018637 256 YGPLYALSADVVVSLVALKNNSF---RMFSNEDVTIGSWMLAMNVNHEDNRELCQSD 309 (352)
Q Consensus 256 ~G~gYvlS~~lv~~l~~~~~~~~---~~~~~EDv~iG~~l~~lgV~~~~~~~f~~~~ 309 (352)
+|+|++||..+|+.|...-...+ +.+.--|--|..|+..+||..+..++|.+.+
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~D 68 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMD 68 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEe
Confidence 79999999999999986422232 3334479999999999999999999998743
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=93.22 E-value=1 Score=40.25 Aligned_cols=115 Identities=12% Similarity=-0.021 Sum_probs=65.2
Q ss_pred HhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCc--EEEEec---CCc---cccC--CCCCccccccccC-CCCC
Q 018637 183 KAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT--YLGCMK---KGP---VFTD--PHLKWYEPQSYLL-GKEY 251 (352)
Q Consensus 183 ~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~--y~G~~~---~~p---v~rd--~~~Kwyv~~~~y~-~~~y 251 (352)
..+.+..+.+|++.+|+|.++.++.|..++.....++.+ ..|... ... ..+. .....+....... ....
T Consensus 77 n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
T cd06421 77 NNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWG 156 (234)
T ss_pred HHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333344478999999999999999888888765432332 222211 000 0000 0000000000000 0012
Q ss_pred CCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEee
Q 018637 252 FLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 252 P~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
..++.|++.++++++++.+.... .....||..++.-+.+.|.+...
T Consensus 157 ~~~~~g~~~~~r~~~~~~ig~~~----~~~~~eD~~l~~r~~~~g~~i~~ 202 (234)
T cd06421 157 AAFCCGSGAVVRREALDEIGGFP----TDSVTEDLATSLRLHAKGWRSVY 202 (234)
T ss_pred CceecCceeeEeHHHHHHhCCCC----ccceeccHHHHHHHHHcCceEEE
Confidence 45678999999999999874321 23447999999988888765444
No 23
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=92.92 E-value=8.4 Score=36.46 Aligned_cols=162 Identities=12% Similarity=0.086 Sum_probs=82.2
Q ss_pred eEEEEEeecCCChHHHHHHHHHHhh-CCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHH
Q 018637 134 LAFRFIIGRTNDQSKMAELRKEVAE-YDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (352)
Q Consensus 134 v~~~FvlG~~~~~~~~~~l~~E~~~-y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L 212 (352)
..++.|-..+.+......++..... +..+-.+....+ .+.. .+...+......+|++..|+|+.+.++-|..++
T Consensus 31 ~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n-~G~~----~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll 105 (299)
T cd02510 31 KEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKR-EGLI----RARIAGARAATGDVLVFLDSHCEVNVGWLEPLL 105 (299)
T ss_pred CEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCC-CCHH----HHHHHHHHHccCCEEEEEeCCcccCccHHHHHH
Confidence 3566666655554433222211222 334444433322 2222 233334444578999999999999988887777
Q ss_pred hhcCCCCC-cEEEEec---C-CccccCC------------CCCccccccc-----cC-CCCCCCCCcCCeeeecHHHHHH
Q 018637 213 AKERPHSQ-TYLGCMK---K-GPVFTDP------------HLKWYEPQSY-----LL-GKEYFLHAYGPLYALSADVVVS 269 (352)
Q Consensus 213 ~~~~~~~~-~y~G~~~---~-~pv~rd~------------~~Kwyv~~~~-----y~-~~~yP~y~~G~gYvlS~~lv~~ 269 (352)
......+. +..|.+. . ....... ...|...... .+ ....-+++.|+..++++++...
T Consensus 106 ~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~ 185 (299)
T cd02510 106 ARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRESPTAPIRSPTMAGGLFAIDREWFLE 185 (299)
T ss_pred HHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcCCCCCccCccccceeeEEEHHHHHH
Confidence 65432222 2222221 0 0000000 0011111000 00 1123456789999999999998
Q ss_pred HHHhhCcCCCCCCcchHHHHHHHHhCCCcEee
Q 018637 270 LVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 270 l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
+-.. .........||+-+..=+...|-+...
T Consensus 186 vGgf-De~~~~~~~ED~Dl~~R~~~~G~~i~~ 216 (299)
T cd02510 186 LGGY-DEGMDIWGGENLELSFKVWQCGGSIEI 216 (299)
T ss_pred hCCC-CCcccccCchhHHHHHHHHHcCCeEEE
Confidence 8433 233444457999988766666654433
No 24
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.58 E-value=1.6 Score=36.07 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=74.7
Q ss_pred EEEEeCCCCCHHHH-HHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCCCcc
Q 018637 97 FVGIQTGFGSGGRR-RSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLP 175 (352)
Q Consensus 97 li~V~S~~~~~~rR-~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~nLt 175 (352)
+|.+.-.+....+- +.+++. .. ....++++-..+ +++..+.+++-.+....+..+...++. .+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q--~~-----------~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~- 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQ--TD-----------PDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-GF- 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHH--SG-----------CEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-HH-
T ss_pred EEEeeCCHHHHHHHHHHHhhc--cC-----------CCEEEEEecccc-ccccccccccccccccccccccccccc-cc-
Confidence 34444444445444 567776 11 134555555544 333344444444434556555555442 22
Q ss_pred hHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCC-CCCcEEEEec----CCccccCCCC--Ccccc---ccc
Q 018637 176 YKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERP-HSQTYLGCMK----KGPVFTDPHL--KWYEP---QSY 245 (352)
Q Consensus 176 ~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~-~~~~y~G~~~----~~pv~rd~~~--Kwyv~---~~~ 245 (352)
-..+..+.+....+|++.+|||.++..+.|..+++.... ...+.+|... .......... .|... ...
T Consensus 67 ---~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (169)
T PF00535_consen 67 ---SAARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFN 143 (169)
T ss_dssp ---HHHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHH
T ss_pred ---cccccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHH
Confidence 223333333355669999999999998877776665432 3345555531 1111011110 01100 000
Q ss_pred cCCCCCCCCCcCCeeeecHHHHHHH
Q 018637 246 LLGKEYFLHAYGPLYALSADVVVSL 270 (352)
Q Consensus 246 y~~~~yP~y~~G~gYvlS~~lv~~l 270 (352)
.....--.++.|++.++++++.+++
T Consensus 144 ~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 144 NIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp TTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred hhhcCCcccccccEEEEEHHHHHhh
Confidence 1112234567889999999998865
No 25
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=91.89 E-value=9.9 Score=38.53 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=86.1
Q ss_pred CeEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHH
Q 018637 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (352)
Q Consensus 133 ~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L 212 (352)
+..++.+...+.+ +..+.+++..+++..+......+ |. .|. .+++.+....+.+|++..|+|..+.++.|.+.+
T Consensus 104 ~~eIivVdDgs~D-~t~~~~~~~~~~~~~v~vv~~~~---n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv 177 (444)
T PRK14583 104 NIEVIAINDGSSD-DTAQVLDALLAEDPRLRVIHLAH---NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLV 177 (444)
T ss_pred CeEEEEEECCCCc-cHHHHHHHHHHhCCCEEEEEeCC---CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHH
Confidence 3555555444433 33444555556666664444332 22 243 355555555689999999999999999998887
Q ss_pred hhcCCCCCcEEEEecCCccccCCCC---CccccccccCC---------CCC--CCCCcCCeeeecHHHHHHHHHhhCcCC
Q 018637 213 AKERPHSQTYLGCMKKGPVFTDPHL---KWYEPQSYLLG---------KEY--FLHAYGPLYALSADVVVSLVALKNNSF 278 (352)
Q Consensus 213 ~~~~~~~~~y~G~~~~~pv~rd~~~---Kwyv~~~~y~~---------~~y--P~y~~G~gYvlS~~lv~~l~~~~~~~~ 278 (352)
+....+++ .|.+...|..++... +.... +|.. ..| +..++|.+.++.+++++.+--..
T Consensus 178 ~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~---- 249 (444)
T PRK14583 178 APLIANPR--TGAVTGNPRIRTRSTLIGRVQVG--EFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS---- 249 (444)
T ss_pred HHHHhCCC--eEEEEccceecCCCcchhhHHHH--HHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC----
Confidence 65422222 233322222122111 11100 0100 011 22347888999999988773221
Q ss_pred CCCCcchHHHHHHHHhCCCcEee
Q 018637 279 RMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 279 ~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
+..-.||.-+|.-+...|-+..-
T Consensus 250 ~~~i~ED~dl~~rl~~~G~~i~~ 272 (444)
T PRK14583 250 PDMITEDIDISWKLQLKHWSVFF 272 (444)
T ss_pred CCcccccHHHHHHHHHcCCeEEE
Confidence 12236999999999888865443
No 26
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=91.64 E-value=7.2 Score=35.01 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=83.9
Q ss_pred CeEEEEEeecCCChHHHHHHHHHHhhCC-CEEEecccccCCCcchHHHHHHHhhhhc--CCcceEEEeCCceeeChHHHH
Q 018637 133 GLAFRFIIGRTNDQSKMAELRKEVAEYD-DFILLDIEEEYSKLPYKTLAFFKAAYAL--YDSEFYVKADDDIYLRPDRLS 209 (352)
Q Consensus 133 ~v~~~FvlG~~~~~~~~~~l~~E~~~y~-DIl~~d~~D~y~nLt~Ktl~~l~w~~~~--~~~~fvlK~DDD~fVn~~~L~ 209 (352)
.+.++++.+.+.+......+++=.++++ ++..+... .|...| -.++.++.+. .+.+|++..|+|+.+.++.|.
T Consensus 28 ~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~---~~~G~~-~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~ 103 (236)
T cd06435 28 NFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE---PLPGAK-AGALNYALERTAPDAEIIAVIDADYQVEPDWLK 103 (236)
T ss_pred CcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC---CCCCCc-hHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHH
Confidence 3566666666655443333322122233 45443322 222233 2345655543 347999999999999999999
Q ss_pred HHHhhcCCCCCcEEEEecCCccccCCCCCccccc------ccc----CC-CC-CCCCCcCCeeeecHHHHHHHHHhhCcC
Q 018637 210 LLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQ------SYL----LG-KE-YFLHAYGPLYALSADVVVSLVALKNNS 277 (352)
Q Consensus 210 ~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwyv~~------~~y----~~-~~-yP~y~~G~gYvlS~~lv~~l~~~~~~~ 277 (352)
.++.... ++. +|.+......++....++... ..+ +. .. --.++.|.+.+++++++..+-... .
T Consensus 104 ~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~-~- 178 (236)
T cd06435 104 RLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWD-E- 178 (236)
T ss_pred HHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHHhCCCC-C-
Confidence 8887653 222 132211000111111111100 000 00 00 012467888999999999874321 1
Q ss_pred CCCCCcchHHHHHHHHhCCCcEeeC
Q 018637 278 FRMFSNEDVTIGSWMLAMNVNHEDN 302 (352)
Q Consensus 278 ~~~~~~EDv~iG~~l~~lgV~~~~~ 302 (352)
.+..||+-++.=+...|.+..-.
T Consensus 179 --~~~~eD~dl~~r~~~~G~~~~~~ 201 (236)
T cd06435 179 --WCITEDSELGLRMHEAGYIGVYV 201 (236)
T ss_pred --ccccchHHHHHHHHHCCcEEEEc
Confidence 23489999998888887665543
No 27
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=91.63 E-value=5.7 Score=35.59 Aligned_cols=139 Identities=11% Similarity=-0.001 Sum_probs=70.9
Q ss_pred CCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHH---hhcCCCCCc-EEEE-ec--CCcc
Q 018637 159 YDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL---AKERPHSQT-YLGC-MK--KGPV 231 (352)
Q Consensus 159 y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L---~~~~~~~~~-y~G~-~~--~~pv 231 (352)
...+..+...++. ....=.-.+++++.. .+++|++..|+|+.+.++.|..++ ........+ .+|. +. ....
T Consensus 46 ~~~i~~i~~~~n~-G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (237)
T cd02526 46 SEKIELIHLGENL-GIAKALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGE 123 (237)
T ss_pred CCcEEEEECCCce-ehHHhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCe
Confidence 3455544444331 122223334554443 268999999999999988888885 222222222 2232 11 1100
Q ss_pred c--cCCCCCccccccccCCC--CCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEee
Q 018637 232 F--TDPHLKWYEPQSYLLGK--EYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 232 ~--rd~~~Kwyv~~~~y~~~--~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
. ......|.......... .-..++.|+|.++++++.+.+-... ... ....||+.++.-+...|.+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd-~~~-~~~~eD~d~~~r~~~~G~~~~~ 195 (237)
T cd02526 124 NSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFD-EDL-FIDYVDTEWCLRARSKGYKIYV 195 (237)
T ss_pred eccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCC-HHH-cCccchHHHHHHHHHcCCcEEE
Confidence 0 00000011000000011 1123455788899999998874321 111 2457899999888888866554
No 28
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.04 E-value=6.6 Score=34.29 Aligned_cols=155 Identities=12% Similarity=0.107 Sum_probs=79.9
Q ss_pred CeEEEEEeecCCChHHHHHHHHHHhhCCC-EEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHH
Q 018637 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDD-FILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLL 211 (352)
Q Consensus 133 ~v~~~FvlG~~~~~~~~~~l~~E~~~y~D-Il~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~ 211 (352)
.+.++++-..+.+. ..+.+++-.+++.. +......++ ... ...+.......+.+|++..|+|..+.++.|..+
T Consensus 27 ~~eiiVvddgS~d~-t~~~~~~~~~~~~~~~~~~~~~~~-~G~----~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~ 100 (214)
T cd04196 27 NDELIISDDGSTDG-TVEIIKEYIDKDPFIIILIRNGKN-LGV----ARNFESLLQAADGDYVFFCDQDDIWLPDKLERL 100 (214)
T ss_pred CeEEEEEeCCCCCC-cHHHHHHHHhcCCceEEEEeCCCC-ccH----HHHHHHHHHhCCCCEEEEECCCcccChhHHHHH
Confidence 45666665555443 33334443444542 333333322 121 222333344568999999999999998888888
Q ss_pred Hhh-cC-CCCCcEEEEec----CCccccCCCC--CccccccccCCCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCc
Q 018637 212 LAK-ER-PHSQTYLGCMK----KGPVFTDPHL--KWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSN 283 (352)
Q Consensus 212 L~~-~~-~~~~~y~G~~~----~~pv~rd~~~--Kwyv~~~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~ 283 (352)
+.. .. +...++.|... .+........ ..+.+...+.......++.|.+.++.+++++.+.... ... ...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~--~~~ 177 (214)
T cd04196 101 LKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELALPFP-DAD--VIM 177 (214)
T ss_pred HHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhhcccc-ccc--ccc
Confidence 876 22 33333444321 1111010000 0000000011111234567899999999999875421 111 568
Q ss_pred chHHHHHHHHhCC
Q 018637 284 EDVTIGSWMLAMN 296 (352)
Q Consensus 284 EDv~iG~~l~~lg 296 (352)
||.++...+...|
T Consensus 178 ~D~~~~~~~~~~~ 190 (214)
T cd04196 178 HDWWLALLASAFG 190 (214)
T ss_pred chHHHHHHHHHcC
Confidence 9998887776653
No 29
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=90.51 E-value=6.6 Score=33.50 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=61.3
Q ss_pred HHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEE-ecCCccccCCCCCccccccccCCCCCCCCCcCCee
Q 018637 182 FKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGC-MKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLY 260 (352)
Q Consensus 182 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~-~~~~pv~rd~~~Kwyv~~~~y~~~~yP~y~~G~gY 260 (352)
++.+.+....+|++..|+|..+.++.|...++...+. ....|. ...... .. .....|+++
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~----~~--------------~~~~~~~~~ 131 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLLNEK----LT--------------ERGIRGCNM 131 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeecccc----cc--------------eeEeccceE
Confidence 3444455678999999999999988888877665322 222232 211100 00 023457788
Q ss_pred eecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEee
Q 018637 261 ALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 261 vlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
.+.++.+..+.... ........||+-++.=+.+.|+....
T Consensus 132 ~~~r~~~~~~ggf~-~~~~~~~~eD~~l~~r~~~~g~~~~~ 171 (182)
T cd06420 132 SFWKKDLLAVNGFD-EEFTGWGGEDSELVARLLNSGIKFRK 171 (182)
T ss_pred EEEHHHHHHhCCCC-cccccCCcchHHHHHHHHHcCCcEEE
Confidence 88888877553321 22233358999999888888855443
No 30
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.40 E-value=9.5 Score=32.63 Aligned_cols=117 Identities=11% Similarity=-0.039 Sum_probs=66.9
Q ss_pred HHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhc--CCCCCcEEEEec--CCccccCCCCCccccccccCCCCCCCCC
Q 018637 180 AFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKE--RPHSQTYLGCMK--KGPVFTDPHLKWYEPQSYLLGKEYFLHA 255 (352)
Q Consensus 180 ~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~~y~G~~~--~~pv~rd~~~Kwyv~~~~y~~~~yP~y~ 255 (352)
..++.+.+..+.+|++..|+|..+..+.+...+... .+...+..|... .... .. ...+..............+.
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 142 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENG-RV-IGRRRPPPFLDKFLLYGMPI 142 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCC-Cc-ccCCCCcchhhhHHhhcCcc
Confidence 344445555678999999999999999998887432 233445556532 1100 00 00010000111111224456
Q ss_pred cCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEee
Q 018637 256 YGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 256 ~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
.|++.++++++.+.+-... . .....||..+..-+...|.....
T Consensus 143 ~~~~~~~~~~~~~~~~~f~-~--~~~~~~D~~~~~r~~~~g~~~~~ 185 (202)
T cd06433 143 CHQATFFRRSLFEKYGGFD-E--SYRIAADYDLLLRLLLAGKIFKY 185 (202)
T ss_pred cCcceEEEHHHHHHhCCCc-h--hhCchhhHHHHHHHHHcCCceEe
Confidence 7888999999998874221 1 12346899888777777765543
No 31
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=90.38 E-value=2.3 Score=38.15 Aligned_cols=156 Identities=14% Similarity=0.208 Sum_probs=81.6
Q ss_pred eEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHh
Q 018637 134 LAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLA 213 (352)
Q Consensus 134 v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~ 213 (352)
..+++|...+.++ ....+ .+...+..+.... .+. ..|.-+ +.......+.+|++.+|+|+.+.++.|.+.+.
T Consensus 29 ~eiivvdd~s~d~-~~~~l-~~~~~~~~~~v~~-~~~----~g~~~a-~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~ 100 (235)
T cd06434 29 LEIIVVTDGDDEP-YLSIL-SQTVKYGGIFVIT-VPH----PGKRRA-LAEGIRHVTTDIVVLLDSDTVWPPNALPEMLK 100 (235)
T ss_pred CEEEEEeCCCChH-HHHHH-HhhccCCcEEEEe-cCC----CChHHH-HHHHHHHhCCCEEEEECCCceeChhHHHHHHH
Confidence 4555665555443 22333 3445566665554 211 234432 33333345899999999999999999988887
Q ss_pred hcCCCCCcEEEEecCCccccCC-CCCccc------cc-------cccCCCCCCCCCcCCeeeecHHHHHHHHHhhC----
Q 018637 214 KERPHSQTYLGCMKKGPVFTDP-HLKWYE------PQ-------SYLLGKEYFLHAYGPLYALSADVVVSLVALKN---- 275 (352)
Q Consensus 214 ~~~~~~~~y~G~~~~~pv~rd~-~~Kwyv------~~-------~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~~~---- 275 (352)
... ++.+ |.+.......+. ...|.. .. ...... --..+.|...++.+++++.+.-...
T Consensus 101 ~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~rr~~l~~~~~~~~~~~~ 176 (235)
T cd06434 101 PFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDG-GVPCLSGRTAAYRTEILKDFLFLEEFTNE 176 (235)
T ss_pred hcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCC-CEEEccCcHHHHHHHHHhhhhhHHHhhhh
Confidence 764 3332 222110000111 111100 00 000001 1123467778888888876532110
Q ss_pred --cCCCCCCcchHHHHHHHHhCCCcEee
Q 018637 276 --NSFRMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 276 --~~~~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
...+....||..++.-+.+.|.+..-
T Consensus 177 ~~~~~~~~~~eD~~l~~~~~~~g~~~~~ 204 (235)
T cd06434 177 TFMGRRLNAGDDRFLTRYVLSHGYKTVY 204 (235)
T ss_pred hhcCCCCCcCchHHHHHHHHHCCCeEEE
Confidence 11234567999999888888876544
No 32
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.17 E-value=4.3 Score=35.52 Aligned_cols=94 Identities=19% Similarity=0.085 Sum_probs=59.8
Q ss_pred HHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcC-CCCCcEEEEecCCccccCCCCCccccccccCCCCCCCCCcC
Q 018637 179 LAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKER-PHSQTYLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYG 257 (352)
Q Consensus 179 l~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~~y~G~~~~~pv~rd~~~Kwyv~~~~y~~~~yP~y~~G 257 (352)
-.+++++. ..+.+|++..|||..+.++.|..++.... +.-.++.|... ...+ .+
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~~------------------~~ 123 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL------DPDG------------------SF 123 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE------cCCC------------------ce
Confidence 34556665 45789999999999999888777776543 22222222211 1111 34
Q ss_pred CeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcE
Q 018637 258 PLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNH 299 (352)
Q Consensus 258 ~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~ 299 (352)
.|.++.+++++.+--. ... -....||+.++.-+...|...
T Consensus 124 ~~~~~~~~~~~~~g~~-~~~-~~~~~eD~~~~~r~~~~G~~i 163 (202)
T cd04185 124 VGVLISRRVVEKIGLP-DKE-FFIWGDDTEYTLRASKAGPGI 163 (202)
T ss_pred EEEEEeHHHHHHhCCC-Chh-hhccchHHHHHHHHHHcCCcE
Confidence 5689999999877311 111 124569999999888888665
No 33
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=90.08 E-value=2.3 Score=36.59 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=72.0
Q ss_pred CeEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHH
Q 018637 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (352)
Q Consensus 133 ~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L 212 (352)
.+.++.+.+.+.+.. ...++...+++..+..++...++ .|. .+++.+......+|++.+|+|....++.|..++
T Consensus 29 ~~eiivvdd~s~d~t-~~~~~~~~~~~~~i~~i~~~~n~----G~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDRT-LEILRELAARDPRVKVIRLSRNF----GQQ-AALLAGLDHARGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCccH-HHHHHHHHhhCCCEEEEEecCCC----CcH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 356666666555432 23344444456556555544332 222 333444444566999999999999988787777
Q ss_pred hhcCCCCCcEEEEecC--CccccCCCCCccccccccCCCCCCCCCcCCeeeecHHHHHHHHHh
Q 018637 213 AKERPHSQTYLGCMKK--GPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLVAL 273 (352)
Q Consensus 213 ~~~~~~~~~y~G~~~~--~pv~rd~~~Kwyv~~~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~ 273 (352)
+.......+.+|.... .+..+.-.++.+...........-+...|+.+++++++++.+...
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 103 AKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 7644445566665421 110000000111000000111233456788899999999998653
No 34
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=89.56 E-value=6.4 Score=37.00 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=97.7
Q ss_pred EEEeCCCCCHH-HHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHH----HhhCCCEEEecccccCC
Q 018637 98 VGIQTGFGSGG-RRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKE----VAEYDDFILLDIEEEYS 172 (352)
Q Consensus 98 i~V~S~~~~~~-rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E----~~~y~DIl~~d~~D~y~ 172 (352)
|+|.+.-...+ -.+.++.++...... . -...+.+ |++-.+.+++.....+++ .+++..-+.+-+...-.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~---~--~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~ 76 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKT---G--LADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRE 76 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhc---C--CcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 45555544444 455666655311000 0 0123455 888777665432211111 12233322222222223
Q ss_pred CcchHHHHHHHhhhhc-CCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCCCCCcc----------c
Q 018637 173 KLPYKTLAFFKAAYAL-YDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWY----------E 241 (352)
Q Consensus 173 nLt~Ktl~~l~w~~~~-~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwy----------v 241 (352)
|.-.|+-..-...... .+.+|++-.|.|+.+.++.|.+.+......+. +|-+.......+..+-|. .
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLYG 154 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHHH
Confidence 3335655544444332 57899999999999999999998876532222 233321111111111110 0
Q ss_pred c-----ccccCCCCCCCCCcCCeeeecHHHHHHHHHhh----CcCC-CCCCcchHHHHHHHHhCCCcEee
Q 018637 242 P-----QSYLLGKEYFLHAYGPLYALSADVVVSLVALK----NNSF-RMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 242 ~-----~~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~~----~~~~-~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
+ ...|.+ --.+|.|...++.++++..+.... ..-. ...-.||..+|..+...|-+-+-
T Consensus 155 ~~~~~~~~~~~~--~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~ 222 (254)
T cd04191 155 PVFGRGLAAWQG--GEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRL 222 (254)
T ss_pred HHHHHHHHHhcC--CccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEE
Confidence 0 000111 123567999999999988753211 0011 12358999999999888865443
No 35
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=89.21 E-value=3.5 Score=33.86 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=49.5
Q ss_pred HHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCC--CcEEEEec---CC-ccccCCC-CCccccc-cccC---C
Q 018637 180 AFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHS--QTYLGCMK---KG-PVFTDPH-LKWYEPQ-SYLL---G 248 (352)
Q Consensus 180 ~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~--~~y~G~~~---~~-pv~rd~~-~Kwyv~~-~~y~---~ 248 (352)
..++++.+..+.+|++.+|+|..+..+.|..++....... .+..|... .. ....... .++.... .... .
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 3445555555899999999999999887877745432222 22233321 10 0000000 0000000 0001 1
Q ss_pred CCCCCCCcCCeeeecHHHHHHHH
Q 018637 249 KEYFLHAYGPLYALSADVVVSLV 271 (352)
Q Consensus 249 ~~yP~y~~G~gYvlS~~lv~~l~ 271 (352)
......+.|.+++++++++..+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23446678999999999998774
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.72 E-value=17 Score=32.45 Aligned_cols=160 Identities=11% Similarity=0.003 Sum_probs=83.6
Q ss_pred CeEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHH
Q 018637 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (352)
Q Consensus 133 ~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L 212 (352)
.+.++.+.+.+.++ ....++...+++..+....-.+. . +. .++..+.+..+.+|++.+|||..+.++.|...+
T Consensus 31 ~~evivvd~~s~d~-~~~~~~~~~~~~~~v~~i~~~~~--~---~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 31 LIEIIVVDGGSTDG-TREIVQEYAAKDPRIRLIDNPKR--I---QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred ccEEEEEeCCCCcc-HHHHHHHHHhcCCeEEEEeCCCC--C---ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHHHHH
Confidence 45666666555443 33444444444444444432211 1 11 345555555588999999999999988888887
Q ss_pred hhcC-CCCCcEEEEec---CCcccc----CCCCCcccccccc--CCCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCC
Q 018637 213 AKER-PHSQTYLGCMK---KGPVFT----DPHLKWYEPQSYL--LGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFS 282 (352)
Q Consensus 213 ~~~~-~~~~~y~G~~~---~~pv~r----d~~~Kwyv~~~~y--~~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~ 282 (352)
+... +......|... ..+..+ .....+......+ .....-.++.|++.++++++.+++.-. ......
T Consensus 104 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~ 180 (249)
T cd02525 104 EALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGF---DESLVR 180 (249)
T ss_pred HHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCC---CcccCc
Confidence 6543 22233344432 111100 0000000000000 011101145677888999998877322 112335
Q ss_pred cchHHHHHHHHhCCCcEeeC
Q 018637 283 NEDVTIGSWMLAMNVNHEDN 302 (352)
Q Consensus 283 ~EDv~iG~~l~~lgV~~~~~ 302 (352)
.||..++.-+.+.|.+....
T Consensus 181 ~eD~~l~~r~~~~G~~~~~~ 200 (249)
T cd02525 181 NEDAELNYRLRKAGYKIWLS 200 (249)
T ss_pred cchhHHHHHHHHcCcEEEEc
Confidence 79999998888888776654
No 37
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.11 E-value=17 Score=31.55 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=80.2
Q ss_pred CeEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHH
Q 018637 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (352)
Q Consensus 133 ~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L 212 (352)
.+.++.+-+.+.+......++...+.+.-+...... .-.+. -.++.++.+....+|++..|+|..+.++.|...+
T Consensus 31 ~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~-~~~g~----~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 31 NWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFRE-ENGGI----SAATNSALELATGEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcc-cCCCH----HHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHH
Confidence 345666655555543333333333333334332222 11111 2234444445578999999999999999888888
Q ss_pred hhc--CCCCCcEEEEec---CCccccCCCCCccccccccCCCC-CCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchH
Q 018637 213 AKE--RPHSQTYLGCMK---KGPVFTDPHLKWYEPQSYLLGKE-YFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDV 286 (352)
Q Consensus 213 ~~~--~~~~~~y~G~~~---~~pv~rd~~~Kwyv~~~~y~~~~-yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv 286 (352)
+.. .+.-.+..+... ....... .++.+. +.... +..-+.|++-+++++++..+-... . .....||.
T Consensus 106 ~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~~~iggf~-~--~~~~~eD~ 177 (202)
T cd04184 106 KALNEHPDADLIYSDEDKIDEGGKRSE---PFFKPD--WSPDLLLSQNYIGHLLVYRRSLVRQVGGFR-E--GFEGAQDY 177 (202)
T ss_pred HHHHhCCCCCEEEccHHhccCCCCEec---cccCCC--CCHHHhhhcCCccceEeEEHHHHHHhCCCC-c--CcccchhH
Confidence 764 223333333221 0000000 111111 11111 111123556688999988774321 1 23457999
Q ss_pred HHHHHHHhCCCcEeeC
Q 018637 287 TIGSWMLAMNVNHEDN 302 (352)
Q Consensus 287 ~iG~~l~~lgV~~~~~ 302 (352)
-++.-+.+.|.+....
T Consensus 178 ~l~~rl~~~g~~~~~~ 193 (202)
T cd04184 178 DLVLRVSEHTDRIAHI 193 (202)
T ss_pred HHHHHHHhccceEEEc
Confidence 9998887777766554
No 38
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=87.55 E-value=17 Score=39.41 Aligned_cols=121 Identities=13% Similarity=0.021 Sum_probs=69.3
Q ss_pred CcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEec-------CCccccCCCCCcccccc-
Q 018637 173 KLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMK-------KGPVFTDPHLKWYEPQS- 244 (352)
Q Consensus 173 nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~-------~~pv~rd~~~Kwyv~~~- 244 (352)
|...|.- .++.+.+..+.+|++..|.|+.+.++.|.+.+.....++++ |.+. ..|+.++-......+.+
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v--~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~ 288 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKL--FLVQTPHFFVSPDPIERNLGTFRRMPNEN 288 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCE--EEEeCCeeccCCCHHhhhhHHHHHhhhHH
Confidence 3345543 35555556678999999999999999888877654322332 2221 11111110000001100
Q ss_pred -c-c----CCCC--CCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEe
Q 018637 245 -Y-L----LGKE--YFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHE 300 (352)
Q Consensus 245 -~-y----~~~~--yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~ 300 (352)
. | ++.. -..++.|++.++.+++.+.+-... ...-.||..+|.-+.+.|-+-.
T Consensus 289 ~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~----~~~vtED~~l~~rL~~~G~~~~ 348 (713)
T TIGR03030 289 ELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA----GETVTEDAETALKLHRRGWNSA 348 (713)
T ss_pred HHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC----CCCcCcHHHHHHHHHHcCCeEE
Confidence 0 0 1110 124567899999999998774221 1123799999999988887643
No 39
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=87.14 E-value=23 Score=32.12 Aligned_cols=119 Identities=14% Similarity=0.057 Sum_probs=67.6
Q ss_pred HHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCC-CCc-EEE-EecCCccccCCCCCcccc--ccc----cC---
Q 018637 180 AFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPH-SQT-YLG-CMKKGPVFTDPHLKWYEP--QSY----LL--- 247 (352)
Q Consensus 180 ~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~-~~~-y~G-~~~~~pv~rd~~~Kwyv~--~~~----y~--- 247 (352)
.+++++.+..+.+|++.+|+|+.+.++.|.+.+...... ..+ ++| .+...........+++.. ... .+
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555678999999999999999999888765322 232 222 221100000000011000 000 00
Q ss_pred CCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEeeC
Q 018637 248 GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDN 302 (352)
Q Consensus 248 ~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~~ 302 (352)
....+..++|++.++++++.+.+.... .....||..++.=+...|.+....
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~----~~~~~eD~~l~~rl~~~G~r~~~~ 204 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWD----PFNVTEDADLGLRLARAGYRTGVL 204 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCC----cccchhhHHHHHHHHHCCceEEEe
Confidence 112333467888999999998874321 123479999998787777665543
No 40
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=85.74 E-value=13 Score=36.77 Aligned_cols=187 Identities=11% Similarity=-0.043 Sum_probs=103.8
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCC
Q 018637 94 VMGFVGIQTGFGSG-GRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYS 172 (352)
Q Consensus 94 ~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~ 172 (352)
+.+-|+|.+--.+. --.+.++..=...- ....+..+...+.| +..+.+++-.+++++.+.+... .
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dy----------p~~evivv~d~~~d-~~~~~~~~~~~~~~~~~~~~~~---~ 119 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDY----------PRYEVIVVDDGSTD-ETYEILEELGAEYGPNFRVIYP---E 119 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCC----------CCceEEEECCCCCh-hHHHHHHHHHhhcCcceEEEec---c
Confidence 45556666644443 23344444443331 12455555543333 3344455555666534433311 1
Q ss_pred CcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCc-EEEEecCCccccCCC--CCcccccc--cc-
Q 018637 173 KLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT-YLGCMKKGPVFTDPH--LKWYEPQS--YL- 246 (352)
Q Consensus 173 nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~-y~G~~~~~pv~rd~~--~Kwyv~~~--~y- 246 (352)
+-...-...+.++....+.++++..|.|+.+.++.|.+.+......... +.|.. ..++.. ..|..... +|
T Consensus 120 ~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~----~~~~~~~~~~~l~~~~~~~~~ 195 (439)
T COG1215 120 KKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTP----RIRNRPDPSNLLGRIQAIEYL 195 (439)
T ss_pred ccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCc----eeeecCChhhhcchhcchhhh
Confidence 1122334566677766679999999999999999999999876432222 23322 101100 01100000 00
Q ss_pred ---------C-CCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEeeC
Q 018637 247 ---------L-GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDN 302 (352)
Q Consensus 247 ---------~-~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~~ 302 (352)
. .......+.|++.++-+++++.+.. .....--||.-+|..+...|.+-.-.
T Consensus 196 ~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~----~~~~~i~ED~~lt~~l~~~G~~~~~~ 257 (439)
T COG1215 196 SAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGG----WLEDTITEDADLTLRLHLRGYRVVYV 257 (439)
T ss_pred hhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCC----CCCCceeccHHHHHHHHHCCCeEEEe
Confidence 0 1224678899999999999998742 22334469999999998877654443
No 41
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=84.71 E-value=5.3 Score=34.13 Aligned_cols=130 Identities=14% Similarity=0.134 Sum_probs=68.5
Q ss_pred eEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHh
Q 018637 134 LAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLA 213 (352)
Q Consensus 134 v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~ 213 (352)
..++.+...+.+ .....++....++..+..+...++.. | -.++....+....+|++..|+|..+.++.|.+++.
T Consensus 29 ~eiivvd~~s~d-~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 29 YEIIVVDDGSTD-GTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred EEEEEEcCCCCC-ChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 344555444443 23344444455566655455444422 1 13444444444559999999999999998888887
Q ss_pred h-cCCCCCcEEEEec--C----CccccCCCCCccc--cccccCCCCCCCCCcCCeeeecHHHHHHHH
Q 018637 214 K-ERPHSQTYLGCMK--K----GPVFTDPHLKWYE--PQSYLLGKEYFLHAYGPLYALSADVVVSLV 271 (352)
Q Consensus 214 ~-~~~~~~~y~G~~~--~----~pv~rd~~~Kwyv--~~~~y~~~~yP~y~~G~gYvlS~~lv~~l~ 271 (352)
. ......+..|... . .+..+. ...+.. ..... ...-.....|+.+++.+++++.+.
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 103 KLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIRLL-LGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHHHH-cCCCCcCCCCceeeeHHHHHHHHH
Confidence 6 3444556666531 1 111010 000000 00000 111123356777899999999984
No 42
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=84.51 E-value=4.3 Score=35.44 Aligned_cols=105 Identities=14% Similarity=0.057 Sum_probs=61.6
Q ss_pred eEEEeCCceeeChHHHHHHHhhcC-CCCCcEEEEecCCccccCCCCCccccccc---------cCCCCCCCCCcCCeeee
Q 018637 193 FYVKADDDIYLRPDRLSLLLAKER-PHSQTYLGCMKKGPVFTDPHLKWYEPQSY---------LLGKEYFLHAYGPLYAL 262 (352)
Q Consensus 193 fvlK~DDD~fVn~~~L~~~L~~~~-~~~~~y~G~~~~~pv~rd~~~Kwyv~~~~---------y~~~~yP~y~~G~gYvl 262 (352)
||+-+|+|+-+..+-|.+.+.... ++-.+.-|.+...+. .+.-.++..-... ......+.++.|++.++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 79 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNR-GSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLF 79 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCC-CChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceee
Confidence 688999999999998888876654 221222222211000 0000111111100 01123466788999999
Q ss_pred cHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEee
Q 018637 263 SADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 263 S~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
++++++.+.-. . -.....||..++.=+.+.|-+...
T Consensus 80 r~~~l~~vg~~--~-~~~~~~ED~~l~~~l~~~G~~~~~ 115 (193)
T PF13632_consen 80 RREALREVGGF--D-DPFSIGEDMDLGFRLRRAGYRIVY 115 (193)
T ss_pred eHHHHHHhCcc--c-ccccccchHHHHHHHHHCCCEEEE
Confidence 99999987422 2 234556999999888887755444
No 43
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=84.02 E-value=27 Score=30.19 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=60.9
Q ss_pred HHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcC--CCCCcEEEEecC--CccccCCCCCcccccc-----ccCCCCCC
Q 018637 182 FKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKER--PHSQTYLGCMKK--GPVFTDPHLKWYEPQS-----YLLGKEYF 252 (352)
Q Consensus 182 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~--~~~~~y~G~~~~--~pv~rd~~~Kwyv~~~-----~y~~~~yP 252 (352)
++.+....+.+|++..|+|.++.++.|...+.... +.-.++.|.+.. ... +....+. .|.. .+....-
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~- 148 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDG-NDIGKRR-LPTSHDDILKFARRRS- 148 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCC-Ceecccc-CCCCHHHHHHHhccCC-
Confidence 34444445789999999999999988888877642 223344444321 000 0000000 0100 0100111
Q ss_pred CCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEee
Q 018637 253 LHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 253 ~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
+ ..|++.++.++++..+-.. -.....||..+...+...|.+...
T Consensus 149 ~-~~~~~~~~rr~~~~~~g~~----~~~~~~eD~~~~~r~~~~g~~~~~ 192 (201)
T cd04195 149 P-FNHPTVMFRKSKVLAVGGY----QDLPLVEDYALWARMLANGARFAN 192 (201)
T ss_pred C-CCChHHhhhHHHHHHcCCc----CCCCCchHHHHHHHHHHcCCceec
Confidence 1 2456677787777665321 122669999999888776654433
No 44
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=83.65 E-value=21 Score=33.26 Aligned_cols=137 Identities=11% Similarity=0.030 Sum_probs=68.8
Q ss_pred hCCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCC-Cc-EEEE-e-cC-C---
Q 018637 158 EYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHS-QT-YLGC-M-KK-G--- 229 (352)
Q Consensus 158 ~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~-~~-y~G~-~-~~-~--- 229 (352)
.+.+|..+...++. ....=.-.+++++.+ .+++|++..|||+.+..+.|..+++...... .+ .+|. + .. +
T Consensus 43 ~~~~i~~i~~~~N~-G~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (281)
T TIGR01556 43 RGQKIALIHLGDNQ-GIAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRR 120 (281)
T ss_pred cCCCeEEEECCCCc-chHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCccc
Confidence 34556555444331 112212235666654 3789999999999999888777776543221 22 2222 1 10 0
Q ss_pred -ccccCCCCCccccccccCC-C--CCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEe
Q 018637 230 -PVFTDPHLKWYEPQSYLLG-K--EYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHE 300 (352)
Q Consensus 230 -pv~rd~~~Kwyv~~~~y~~-~--~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~ 300 (352)
+..+.. .+..+...... . .-..++.++|.++++++++.+--.. ..+ .+..||+-+..=+.+.|.+..
T Consensus 121 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~~~~iG~fd-e~~-fi~~~D~e~~~R~~~~G~~i~ 191 (281)
T TIGR01556 121 LPAIHLD--GLLLRQISLDGLTTPQKTSFLISSGCLITREVYQRLGMMD-EEL-FIDHVDTEWSLRAQNYGIPLY 191 (281)
T ss_pred CCceeec--ccceeeecccccCCceeccEEEcCcceeeHHHHHHhCCcc-Hhh-cccchHHHHHHHHHHCCCEEE
Confidence 000000 01000000000 0 1113445667789999999873221 111 245789888766666675433
No 45
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=82.81 E-value=15 Score=31.82 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=47.6
Q ss_pred CCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCCCCCccccc--ccc-------C-C---CCCCCCC
Q 018637 189 YDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQ--SYL-------L-G---KEYFLHA 255 (352)
Q Consensus 189 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwyv~~--~~y-------~-~---~~yP~y~ 255 (352)
.+.+|++.+|.|+.+.++.|..++........+..|.... +++...|.-.. ..| . + -.-+.++
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNS----KNPDDSWITRLYAFAFLVFNRLRPLGRSNLGLSCQL 155 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEee----eCCccCHHHHHHHHHHHHHHHHHHHHHHHcCCCeee
Confidence 4689999999999999988888877654444555665431 11222231100 000 0 0 1123456
Q ss_pred cCCeeeecHHHHHH
Q 018637 256 YGPLYALSADVVVS 269 (352)
Q Consensus 256 ~G~gYvlS~~lv~~ 269 (352)
.|.++++++++++.
T Consensus 156 ~G~~~~~rr~~l~~ 169 (183)
T cd06438 156 GGTGMCFPWAVLRQ 169 (183)
T ss_pred cCchhhhHHHHHHh
Confidence 89999999999987
No 46
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=82.28 E-value=49 Score=36.81 Aligned_cols=118 Identities=12% Similarity=0.005 Sum_probs=67.1
Q ss_pred hHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEe-------cCCccccCCCCCcccccc---c
Q 018637 176 YKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCM-------KKGPVFTDPHLKWYEPQS---Y 245 (352)
Q Consensus 176 ~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~-------~~~pv~rd~~~Kwyv~~~---~ 245 (352)
.|.- .++.+.+..+.+|++..|.|..+..+-|...+.....++++ |-+ +..|..++-...-..+.+ .
T Consensus 326 gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~V--glVQtp~~f~n~dp~~rnl~~~~~~~~e~~~f 402 (852)
T PRK11498 326 AKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKL--AMMQTPHHFFSPDPFERNLGRFRKTPNEGTLF 402 (852)
T ss_pred chHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCe--EEEEcceeccCCchHHHhhHHHhhcccchhHH
Confidence 4443 45555555688999999999999988888776542212222 222 111211110000000100 0
Q ss_pred c----CCC--CCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEe
Q 018637 246 L----LGK--EYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHE 300 (352)
Q Consensus 246 y----~~~--~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~ 300 (352)
| ++. .--.++.|++.++.+++++.+-... . . .-.||..++.-+...|-+-.
T Consensus 403 y~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd-~--~-titED~dlslRL~~~Gyrv~ 459 (852)
T PRK11498 403 YGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA-V--E-TVTEDAHTSLRLHRRGYTSA 459 (852)
T ss_pred HHHHHhHHHhhcccccccceeeeEHHHHHHhcCCC-C--C-ccCccHHHHHHHHHcCCEEE
Confidence 0 000 0124577899999999999885332 1 1 23699999999998886544
No 47
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=72.91 E-value=72 Score=28.71 Aligned_cols=114 Identities=19% Similarity=0.115 Sum_probs=60.1
Q ss_pred HHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcC-CCCCcEEEEecC-CccccCCCCCccccc--c--ccCC-CCCCC
Q 018637 181 FFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKER-PHSQTYLGCMKK-GPVFTDPHLKWYEPQ--S--YLLG-KEYFL 253 (352)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~~y~G~~~~-~pv~rd~~~Kwyv~~--~--~y~~-~~yP~ 253 (352)
.++.+.+....+|++.+|+|+.+.++-|.+++.... +.-.+..|.... .+.........+... . .+.. ...+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 344444444669999999999999877877777653 222333444321 110000000100000 0 0000 11123
Q ss_pred CCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEee
Q 018637 254 HAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 254 y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
.+.|+++.+.+++...+ ......||..++.-+...|.+...
T Consensus 180 ~~~g~~~~~rr~~~~~~-------~~~~~~eD~~l~~~~~~~G~~~~~ 220 (251)
T cd06439 180 GANGAIYAIRRELFRPL-------PADTINDDFVLPLRIARQGYRVVY 220 (251)
T ss_pred eecchHHHhHHHHhcCC-------CcccchhHHHHHHHHHHcCCeEEe
Confidence 45677777777666511 122347999999988888866554
No 48
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=72.57 E-value=90 Score=29.69 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=78.1
Q ss_pred CCCEEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCC-CcEEEEe-c--CCcc---
Q 018637 159 YDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHS-QTYLGCM-K--KGPV--- 231 (352)
Q Consensus 159 y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~-~~y~G~~-~--~~pv--- 231 (352)
+.++..+...++.- ...=.-.+++.+....+ +|++-.++|+.+.++.|.++++...... ....|.. . ..+.
T Consensus 55 ~~~v~~i~~~~NlG-~agg~n~g~~~a~~~~~-~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLG-FAGGFNRGIKYALAKGD-DYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCcc-chhhhhHHHHHHhcCCC-cEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 67887766555421 01111145555554211 2999999999999999999887653322 2233332 1 1100
Q ss_pred ccC-----CCCCc-cccccccCC-----CCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEe
Q 018637 232 FTD-----PHLKW-YEPQSYLLG-----KEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHE 300 (352)
Q Consensus 232 ~rd-----~~~Kw-yv~~~~y~~-----~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~ 300 (352)
.+. ....| ..+...... .....++.|++.++++++++++--. ..--.+..||+-++.=+..+|.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~--de~~F~y~eD~D~~~R~~~~G~~i~ 210 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGF--DERFFIYYEDVDLCLRARKAGYKIY 210 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCC--CcccceeehHHHHHHHHHHcCCeEE
Confidence 010 01112 111111111 1122257899999999999998532 3333457999999988888886443
Q ss_pred e
Q 018637 301 D 301 (352)
Q Consensus 301 ~ 301 (352)
-
T Consensus 211 ~ 211 (305)
T COG1216 211 Y 211 (305)
T ss_pred E
Confidence 3
No 49
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.70 E-value=69 Score=28.00 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=58.0
Q ss_pred hcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEec----C-CccccCCCCCccccccccCCCCCCCCCcCCeee
Q 018637 187 ALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMK----K-GPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYA 261 (352)
Q Consensus 187 ~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~----~-~pv~rd~~~Kwyv~~~~y~~~~yP~y~~G~gYv 261 (352)
.....+|++.+|+|..+.++.|..++...... ...+|... . ....+-...++.... .....+ .++.|.+
T Consensus 69 ~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~ 142 (221)
T cd02522 69 AAARGDWLLFLHADTRLPPDWDAAIIETLRAD-GAVAGAFRLRFDDPGPRLRLLELGANLRS----RLFGLP-YGDQGLF 142 (221)
T ss_pred HhccCCEEEEEcCCCCCChhHHHHHHHHhhcC-CcEEEEEEeeecCCccchhhhhhccccee----cccCCC-cCCceEE
Confidence 33458999999999999988888876654332 33344321 1 110000001111100 001111 2356889
Q ss_pred ecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEe
Q 018637 262 LSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHE 300 (352)
Q Consensus 262 lS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~ 300 (352)
+++++...+-... .. +..||.-++.=+.+.|....
T Consensus 143 ~r~~~~~~~G~fd-~~---~~~ED~d~~~r~~~~G~~~~ 177 (221)
T cd02522 143 IRRELFEELGGFP-EL---PLMEDVELVRRLRRRGRPAL 177 (221)
T ss_pred EEHHHHHHhCCCC-cc---ccccHHHHHHHHHhCCCEEE
Confidence 9999988774321 11 27899999887777775433
No 50
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=71.09 E-value=81 Score=28.58 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=81.3
Q ss_pred CeEEEEEeecCCChHHHHHHHHHHhhCCC--EEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHH
Q 018637 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDD--FILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSL 210 (352)
Q Consensus 133 ~v~~~FvlG~~~~~~~~~~l~~E~~~y~D--Il~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~ 210 (352)
.+.+++|-..+.+.. .+.+++-.++|++ +....... |.. | -.+++.+....+.+|++.+|+|..+.++.|..
T Consensus 40 ~~eiivvDdgS~D~t-~~i~~~~~~~~~~~~v~~~~~~~---n~G-~-~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~ 113 (243)
T PLN02726 40 DFEIIVVDDGSPDGT-QDVVKQLQKVYGEDRILLRPRPG---KLG-L-GTAYIHGLKHASGDFVVIMDADLSHHPKYLPS 113 (243)
T ss_pred CeEEEEEeCCCCCCH-HHHHHHHHHhcCCCcEEEEecCC---CCC-H-HHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHH
Confidence 456777766665532 2333333445553 22222221 211 1 12344444445789999999999999998888
Q ss_pred HHhhcC-CCCCcEEEEec-CCccccCCCCCc---cccc------cccCCCCCCCCCcCCeeeecHHHHHHHHHhhCcCCC
Q 018637 211 LLAKER-PHSQTYLGCMK-KGPVFTDPHLKW---YEPQ------SYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFR 279 (352)
Q Consensus 211 ~L~~~~-~~~~~y~G~~~-~~pv~rd~~~Kw---yv~~------~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~ 279 (352)
++.... ....+..|... .... .....| ..+. ....+.. -....|+..++++++++.+.... ...
T Consensus 114 l~~~~~~~~~~~v~g~r~~~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~~-~~d~~g~~~~~rr~~~~~i~~~~--~~~ 188 (243)
T PLN02726 114 FIKKQRETGADIVTGTRYVKGGG--VHGWDLRRKLTSRGANVLAQTLLWPG-VSDLTGSFRLYKRSALEDLVSSV--VSK 188 (243)
T ss_pred HHHHHHhcCCcEEEEccccCCCC--cCCccHHHHHHHHHHHHHHHHHhCCC-CCcCCCcccceeHHHHHHHHhhc--cCC
Confidence 876542 23455556431 1000 000001 1100 0001111 12356778899999999996421 112
Q ss_pred CCCcchHHHHHHHHhCCCcEeeC
Q 018637 280 MFSNEDVTIGSWMLAMNVNHEDN 302 (352)
Q Consensus 280 ~~~~EDv~iG~~l~~lgV~~~~~ 302 (352)
.+ .+|.-+...+...|.+...-
T Consensus 189 ~~-~~~~el~~~~~~~g~~i~~v 210 (243)
T PLN02726 189 GY-VFQMEIIVRASRKGYRIEEV 210 (243)
T ss_pred Cc-EEehHHHHHHHHcCCcEEEe
Confidence 22 34666666666677666653
No 51
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=70.52 E-value=74 Score=27.87 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=46.7
Q ss_pred CCcceEEEeCCceeeChHHHHHHHhh-cCCCCCcEEEEe-cCCccccCCCCCc--cccc--ccc---CCCCCCCCCcCCe
Q 018637 189 YDSEFYVKADDDIYLRPDRLSLLLAK-ERPHSQTYLGCM-KKGPVFTDPHLKW--YEPQ--SYL---LGKEYFLHAYGPL 259 (352)
Q Consensus 189 ~~~~fvlK~DDD~fVn~~~L~~~L~~-~~~~~~~y~G~~-~~~pv~rd~~~Kw--yv~~--~~y---~~~~yP~y~~G~g 259 (352)
...+|++.+|+|..+.++.|..++.. ..++..+..|.. ..... ......+ +.+. ..+ ....-...+.|++
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGG-VEGWGLKRKLISRGANLLARLLLGRKVSDPTSGF 155 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCc-cCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 45599999999999999988888876 344455555543 11111 0000000 0000 000 0011123567888
Q ss_pred eeecHHHHHHHH
Q 018637 260 YALSADVVVSLV 271 (352)
Q Consensus 260 YvlS~~lv~~l~ 271 (352)
.++++++++.+.
T Consensus 156 ~~~~r~~~~~ig 167 (224)
T cd06442 156 RAYRREVLEKLI 167 (224)
T ss_pred chhhHHHHHHHh
Confidence 899999999986
No 52
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=69.61 E-value=97 Score=30.04 Aligned_cols=134 Identities=15% Similarity=0.142 Sum_probs=69.0
Q ss_pred CeEEEEEeecCCChHHHHHHHHHHhhCCC-EEEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHH
Q 018637 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDD-FILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLL 211 (352)
Q Consensus 133 ~v~~~FvlG~~~~~~~~~~l~~E~~~y~D-Il~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~ 211 (352)
...+++|-..+.|... +.+++-.+.+++ ++......++ .|.- +++......+.+|++.+|+|.-.+++.+.++
T Consensus 38 ~~EIIvVDDgS~D~T~-~il~~~~~~~~~~v~~i~~~~n~----G~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNSA-EMLVEAAQAPDSHIVAILLNRNY----GQHS-AIMAGFSHVTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcHH-HHHHHHHhhcCCcEEEEEeCCCC----CHHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Confidence 4577788776665432 223332334444 4444333332 2222 2223333457899999999999999999888
Q ss_pred HhhcCCCCCcEEEEec--CCccccCCCCCccccc-cccCCCCCCCCCcCCeeeecHHHHHHHHHh
Q 018637 212 LAKERPHSQTYLGCMK--KGPVFTDPHLKWYEPQ-SYLLGKEYFLHAYGPLYALSADVVVSLVAL 273 (352)
Q Consensus 212 L~~~~~~~~~y~G~~~--~~pv~rd~~~Kwyv~~-~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~ 273 (352)
++......++..|... ..+..|.-.++.+--- ....+..++.+.+| .-++++++++.+...
T Consensus 112 ~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~g-fr~~~r~~~~~l~~~ 175 (325)
T PRK10714 112 VAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCM-LRAYRRHIVDAMLHC 175 (325)
T ss_pred HHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcC-eEEEcHHHHHHHHHC
Confidence 8775433344444332 1122121111111000 01123334443333 348999999998643
No 53
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=69.39 E-value=84 Score=28.03 Aligned_cols=114 Identities=10% Similarity=0.003 Sum_probs=62.1
Q ss_pred HHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCCCCCccccc-----------c---cc
Q 018637 181 FFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQ-----------S---YL 246 (352)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwyv~~-----------~---~y 246 (352)
.++......+.+|++.+|.|+.+.++.|...+.... .+. +|.+.......+....|.... . .+
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 345555556899999999999999999888544332 222 233221100011111121100 0 00
Q ss_pred CCCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEeeC
Q 018637 247 LGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDN 302 (352)
Q Consensus 247 ~~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~~ 302 (352)
....+ ..+.|++-++.+++++.+--.. .....||+.++.-+...|.+..-.
T Consensus 155 ~~~~~-~~~~g~~~~~rr~~~~~vgg~~----~~~~~ED~~l~~rl~~~G~~~~~~ 205 (232)
T cd06437 155 STGLF-FNFNGTAGVWRKECIEDAGGWN----HDTLTEDLDLSYRAQLKGWKFVYL 205 (232)
T ss_pred hcCCe-EEeccchhhhhHHHHHHhCCCC----CCcchhhHHHHHHHHHCCCeEEEe
Confidence 01111 1234666678888887763221 123479999998888888665553
No 54
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=67.99 E-value=95 Score=29.22 Aligned_cols=162 Identities=12% Similarity=0.154 Sum_probs=87.2
Q ss_pred CCeEEEEEeecCCChHHHHHHHHHHhhCCCE-EE-ecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHH
Q 018637 132 TGLAFRFIIGRTNDQSKMAELRKEVAEYDDF-IL-LDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLS 209 (352)
Q Consensus 132 ~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DI-l~-~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 209 (352)
..+.++++-+.+... ....|.+-.+.++-+ ++ .+......+.+ .+..-+.+....+|++..|.|+++.++.+.
T Consensus 33 ~~~eiIvvd~~s~~~-~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~~i~ 107 (281)
T PF10111_consen 33 PDFEIIVVDDGSSDE-FDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPDFIE 107 (281)
T ss_pred CCEEEEEEECCCchh-HHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHHHHH
Confidence 356666665554432 345566666666665 32 22222222322 122333344589999999999999999999
Q ss_pred HHHh---hcCC-CCCcEEEEe---cC-C--ccccCCCCCccc--ccccc--CCCCCC-CCCcCCeeeecHHHHHHHHHhh
Q 018637 210 LLLA---KERP-HSQTYLGCM---KK-G--PVFTDPHLKWYE--PQSYL--LGKEYF-LHAYGPLYALSADVVVSLVALK 274 (352)
Q Consensus 210 ~~L~---~~~~-~~~~y~G~~---~~-~--pv~rd~~~Kwyv--~~~~y--~~~~yP-~y~~G~gYvlS~~lv~~l~~~~ 274 (352)
+.+. .... ...++++-+ .. . .........|.. -.... ..+.+. ....|+..+++++.-..+-..
T Consensus 108 ~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGf- 186 (281)
T PF10111_consen 108 KLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGF- 186 (281)
T ss_pred HHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCC-
Confidence 8888 3322 223333322 11 1 010000001110 00000 011111 223468999999998888544
Q ss_pred CcCCCCCCcchHHHHHHHHhCCCcE
Q 018637 275 NNSFRMFSNEDVTIGSWMLAMNVNH 299 (352)
Q Consensus 275 ~~~~~~~~~EDv~iG~~l~~lgV~~ 299 (352)
.+.......||.=++.=|.+.|...
T Consensus 187 DE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 187 DERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CccccCCCcchHHHHHHHHHcCCcE
Confidence 2555667899999997777776544
No 55
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=67.14 E-value=60 Score=25.51 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=50.9
Q ss_pred HHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCc-EEEEecCCccccCCCCCccccccccCCCCCCCCCcCCe
Q 018637 181 FFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT-YLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPL 259 (352)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~-y~G~~~~~pv~rd~~~Kwyv~~~~y~~~~yP~y~~G~g 259 (352)
.+..+....+.+|++-+|+|..+.++.+...+......+.. .++.. ++
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~-------------------------------~~ 116 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP-------------------------------GN 116 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc-------------------------------ch
Confidence 33344443489999999999999998888764432211111 11100 78
Q ss_pred eeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCC
Q 018637 260 YALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMN 296 (352)
Q Consensus 260 YvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lg 296 (352)
+++++++.+.+.... .......||..++..+...|
T Consensus 117 ~~~~~~~~~~~~~~~--~~~~~~~ed~~~~~~~~~~g 151 (156)
T cd00761 117 LLFRRELLEEIGGFD--EALLSGEEDDDFLLRLLRGG 151 (156)
T ss_pred heeeHHHHHHhCCcc--hHhcCCcchHHHHHHHHhhc
Confidence 999999998874321 11122278888877666544
No 56
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=66.55 E-value=53 Score=34.23 Aligned_cols=146 Identities=16% Similarity=0.081 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhCCCEEEecccccCCCcchHHHHHHHhhhh-------c--CCcceEEEeCCceeeChHHHHHHHhhcCC
Q 018637 147 SKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYA-------L--YDSEFYVKADDDIYLRPDRLSLLLAKERP 217 (352)
Q Consensus 147 ~~~~~l~~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~-------~--~~~~fvlK~DDD~fVn~~~L~~~L~~~~~ 217 (352)
+..+.+++=.++|..+..+-.. . .+-+.|.- .++|+.+ + .++++++-.|-|..+.++.|..+.. ..+
T Consensus 109 ~T~~~v~~l~~~~p~v~~vv~~-~-~gp~~Ka~-aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~-~~~ 184 (504)
T PRK14716 109 ATLREVDRLAARYPRVHLVIVP-H-DGPTSKAD-CLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNY-LLP 184 (504)
T ss_pred hHHHHHHHHHHHCCCeEEEEeC-C-CCCCCHHH-HHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHh-hcC
Confidence 3333343334557765322222 1 23346665 4444322 1 2469999999999999999875432 222
Q ss_pred CCCcEEEEecCCccccCCCCCc----cccccccCC---------C--CCCCCCcCCeeeecHHHHHHHHHhhCc--CCCC
Q 018637 218 HSQTYLGCMKKGPVFTDPHLKW----YEPQSYLLG---------K--EYFLHAYGPLYALSADVVVSLVALKNN--SFRM 280 (352)
Q Consensus 218 ~~~~y~G~~~~~pv~rd~~~Kw----yv~~~~y~~---------~--~yP~y~~G~gYvlS~~lv~~l~~~~~~--~~~~ 280 (352)
+..+.-..+.. . ..+.+.| |.- +|.. . .-+-.+.|.|+++++++++.+...... .-..
T Consensus 185 ~~~~VQ~pv~~--~-~~~~~~~~ag~y~~--ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~ 259 (504)
T PRK14716 185 RHDFVQLPVFS--L-PRDWGEWVAGTYMD--EFAESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSD 259 (504)
T ss_pred CCCEEecceec--c-CCchhHHHHHHHHH--HHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCC
Confidence 22211100100 0 0111111 110 0100 0 112346799999999999998543211 1123
Q ss_pred CCcchHHHHHHHHhCCCcEee
Q 018637 281 FSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 281 ~~~EDv~iG~~l~~lgV~~~~ 301 (352)
.--||.-+|.-+...|.+..-
T Consensus 260 sLTED~dLglRL~~~G~rv~y 280 (504)
T PRK14716 260 SLTEDYDIGLRLKRAGFRQIF 280 (504)
T ss_pred CcchHHHHHHHHHHCCCEEEE
Confidence 458999999999888866443
No 57
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=57.16 E-value=22 Score=32.61 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=62.3
Q ss_pred CCcceEEEeCCceeeChHHHHHHHhhcCCCCCc--EEEEecC-----CccccCCCCCccccc----cccCCCCCCCCCcC
Q 018637 189 YDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT--YLGCMKK-----GPVFTDPHLKWYEPQ----SYLLGKEYFLHAYG 257 (352)
Q Consensus 189 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~--y~G~~~~-----~pv~rd~~~Kwyv~~----~~y~~~~yP~y~~G 257 (352)
.+.+|++.+|.|+.+.++.|..++......+.+ ..|.+.. .+..+-..--|.... .....-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 588999999999999999988887665322232 2343311 111000000000000 00011134566789
Q ss_pred CeeeecHHHHHHHHHhhC---------cCC-------CCCCcchHHHHHHHHhCCCcEe
Q 018637 258 PLYALSADVVVSLVALKN---------NSF-------RMFSNEDVTIGSWMLAMNVNHE 300 (352)
Q Consensus 258 ~gYvlS~~lv~~l~~~~~---------~~~-------~~~~~EDv~iG~~l~~lgV~~~ 300 (352)
+++++.+++++.+..... ..+ ....-||..++..+...|-+..
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~ 210 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRK 210 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccE
Confidence 999999998877632110 000 1124799999988887775533
No 58
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=56.49 E-value=2.1e+02 Score=28.82 Aligned_cols=114 Identities=10% Similarity=0.079 Sum_probs=62.0
Q ss_pred HHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCc--EEEEecCCc-cccCCCC--Ccccccc---ccC-----
Q 018637 181 FFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT--YLGCMKKGP-VFTDPHL--KWYEPQS---YLL----- 247 (352)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~--y~G~~~~~p-v~rd~~~--Kwyv~~~---~y~----- 247 (352)
+++++.+..+.+|++..|+|..+.++.|.+.+.....++++ ..|.+...+ ....... .+..... .|.
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~ 201 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLA 201 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHh
Confidence 45555555678999999999999999998888765323333 234432111 0000000 0111110 010
Q ss_pred ------CCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHh-CCCc
Q 018637 248 ------GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLA-MNVN 298 (352)
Q Consensus 248 ------~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~-lgV~ 298 (352)
...-+..++|++.++.++++.++-... .. .-.||..++.=+.. .|-+
T Consensus 202 ~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~-~i~ED~~l~~rl~~~~g~k 255 (439)
T TIGR03111 202 GRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SE-TVGEDTDMTFQIRELLDGK 255 (439)
T ss_pred hhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CC-CcCccHHHHHHHHHhcCCe
Confidence 001122357888889999887653211 12 23899999976643 3433
No 59
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=55.08 E-value=1.1e+02 Score=26.81 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=83.1
Q ss_pred CeEEEEEeecCCChHHHHHHHHHHhhCCCE-EEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHH
Q 018637 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDF-ILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLL 211 (352)
Q Consensus 133 ~v~~~FvlG~~~~~~~~~~l~~E~~~y~DI-l~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~ 211 (352)
...++.+-+.+.+. ....+++..++++.. ..+....+. .|. .++..+.+....+|++.+|+|..+.++.+..+
T Consensus 30 ~~eiivvdd~S~D~-t~~~~~~~~~~~~~~i~~i~~~~n~----G~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDG-TAEVARKLARKNPALIRVLTLPKNR----GKG-GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCc-hHHHHHHHHHhCCCcEEEEEcccCC----CcH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 45666666666553 334444545556654 333333221 122 23333333345699999999999999999888
Q ss_pred Hhh-cCCCCCcEEEEecCCccccC-CCCCccc---cccc------cCCCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCC
Q 018637 212 LAK-ERPHSQTYLGCMKKGPVFTD-PHLKWYE---PQSY------LLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRM 280 (352)
Q Consensus 212 L~~-~~~~~~~y~G~~~~~pv~rd-~~~Kwyv---~~~~------y~~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~ 280 (352)
+.. ......+.+|......- .. ....|+. +... .-+..+. -...+..+++++++..+... .....
T Consensus 104 ~~~~~~~~~~~v~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~g~~~~~r~~~~~~~~~--~~~~~ 179 (211)
T cd04188 104 EEALKTSGYDIAIGSRAHLAS-AAVVKRSWLRNLLGRGFNFLVRLLLGLGIK-DTQCGFKLFTRDAARRLFPR--LHLER 179 (211)
T ss_pred HHHHhccCCcEEEEEeeccCC-cccccccHHHHHHHHHHHHHHHHHcCCCCc-ccccCceeEcHHHHHHHHhh--hhccc
Confidence 876 33444566675321000 00 0011110 0000 0011111 12345689999999988642 12222
Q ss_pred CCcchHHHHHHHHhCCCcEeeC
Q 018637 281 FSNEDVTIGSWMLAMNVNHEDN 302 (352)
Q Consensus 281 ~~~EDv~iG~~l~~lgV~~~~~ 302 (352)
+ .+|.-+..-+.+.|.+...-
T Consensus 180 ~-~~d~el~~r~~~~g~~~~~v 200 (211)
T cd04188 180 W-AFDVELLVLARRLGYPIEEV 200 (211)
T ss_pred e-EeeHHHHHHHHHcCCeEEEc
Confidence 2 46888877777777655553
No 60
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=53.35 E-value=1.1e+02 Score=30.23 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=47.3
Q ss_pred HHHhhhhcCCcceEEEeCCceeeChH---HHHHHHhhcCCCCCcEEEEecCCccccCCCCCcc-c---cccccCCCCCCC
Q 018637 181 FFKAAYALYDSEFYVKADDDIYLRPD---RLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWY-E---PQSYLLGKEYFL 253 (352)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~fVn~~---~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwy-v---~~~~y~~~~yP~ 253 (352)
++.|+-...++++++-+|||..+.++ -+.+.|......++++ ++..- .+ .+++. + |...|- -.
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~---Nd-nG~~~~~~~~~~~lyr----s~ 157 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAW---ND-NGKEHFVDDTPSLLYR----TD 157 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEee---cc-CCcccccCCCcceEEE----ec
Confidence 55555544579999999999999988 4445554444445554 33210 01 11111 1 222221 24
Q ss_pred CCcCCeeeecHHHHHHH
Q 018637 254 HAYGPLYALSADVVVSL 270 (352)
Q Consensus 254 y~~G~gYvlS~~lv~~l 270 (352)
|+.|.|+++.+++-+.+
T Consensus 158 ff~glGWml~r~~W~e~ 174 (334)
T cd02514 158 FFPGLGWMLTRKLWKEL 174 (334)
T ss_pred CCCchHHHHHHHHHHHh
Confidence 67799999999998777
No 61
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=52.14 E-value=32 Score=24.28 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=20.5
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhcCcccccCCCCC
Q 018637 22 TVLIFSCLIIGIAGFVLGISAFLYAGRGAHRCSNFN 57 (352)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 57 (352)
..|.+|++++.++.+.+.|-.++.. .++||...+
T Consensus 2 ~~~~iV~i~iv~~lLg~~I~~~~K~--ygYkht~d~ 35 (50)
T PF12606_consen 2 IAFLIVSIFIVMGLLGLSICTTLKA--YGYKHTVDP 35 (50)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhc--cccccccCC
Confidence 3466666666655555555554554 689996544
No 62
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=47.60 E-value=1.9e+02 Score=31.49 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=102.9
Q ss_pred CCeeEEEEEeCCCCCHHH-HHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHH----HHHHHHhhCC---CEE
Q 018637 92 HKVMGFVGIQTGFGSGGR-RRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMA----ELRKEVAEYD---DFI 163 (352)
Q Consensus 92 ~~~~lli~V~S~~~~~~r-R~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~----~l~~E~~~y~---DIl 163 (352)
....+-|+|.+.-+..++ +..|+.++.+-... ....++.+ |++..+.+++... .+++=.++|+ .+.
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~-----~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAAT-----GHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhc-----CCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 445566777765554432 35677777542210 01123454 8888877754321 1222233343 344
Q ss_pred EecccccCCCcchHHHHHHHhhhh-cCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCCCCCcccc
Q 018637 164 LLDIEEEYSKLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEP 242 (352)
Q Consensus 164 ~~d~~D~y~nLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwyv~ 242 (352)
...-. .|.-.|.-..-.|... -.+++|++-.|-|+.+..+.|.+.+.....+++ +|-+...|...+..+ ++--
T Consensus 196 yr~R~---~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~s-lfaR 269 (691)
T PRK05454 196 YRRRR---RNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADT-LFAR 269 (691)
T ss_pred EEECC---cCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCC-HHHH
Confidence 33222 3434566655555554 257899999999999999999998876432223 354432222122211 1110
Q ss_pred ccccCCCCC--------------CCCCcCCeeeecHHHHHHHHHhh--CcCC---CCCCcchHHHHHHHHhCCCcEee
Q 018637 243 QSYLLGKEY--------------FLHAYGPLYALSADVVVSLVALK--NNSF---RMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 243 ~~~y~~~~y--------------P~y~~G~gYvlS~~lv~~l~~~~--~~~~---~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
-..+....| -....|...|+.+++........ ...- ...--||...|..++..|-+..-
T Consensus 270 ~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~ 347 (691)
T PRK05454 270 LQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWL 347 (691)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEE
Confidence 000000000 01123667788888776653210 0111 12457899999999988765443
No 63
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=43.78 E-value=3.1e+02 Score=26.58 Aligned_cols=198 Identities=11% Similarity=0.031 Sum_probs=92.0
Q ss_pred CCCeeEEEEEeCCCCCHHHHHHHHHHhcCCCccchhhhhccCCeEEEEEeecCCChHHHHHHHHHHhhC----CCEEEec
Q 018637 91 RHKVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEY----DDFILLD 166 (352)
Q Consensus 91 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~l~~l~~~~~v~~~FvlG~~~~~~~~~~l~~E~~~y----~DIl~~d 166 (352)
...+.+-|+|..--....-.+.++++....... . .........+++|-..+.|.+. +.+++-.+.+ .++-.+.
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~-~-~~~~~~~~EIIVVDDgStD~T~-~i~~~~~~~~~~~~~~i~vi~ 143 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESR-S-RKDPKFKYEIIIVNDGSKDKTL-KVAKDFWRQNINPNIDIRLLS 143 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhh-h-ccCCCCCEEEEEEeCCCCCchH-HHHHHHHHhcCCCCCcEEEEE
Confidence 445566666664332222235566655421100 0 0000124566667665555332 2222222333 1344444
Q ss_pred ccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHHHHHhhc----CCCCCcEEEEecC--CccccCCCCCcc
Q 018637 167 IEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKE----RPHSQTYLGCMKK--GPVFTDPHLKWY 240 (352)
Q Consensus 167 ~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~----~~~~~~y~G~~~~--~pv~rd~~~Kwy 240 (352)
...+. .|. .+++........+|++.+|.|....++.+..++... .+.-.+.+|.... ..- ......|+
T Consensus 144 ~~~N~----G~~-~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~-~~~~~~~~ 217 (333)
T PTZ00260 144 LLRNK----GKG-GAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSD-VVAKRKWY 217 (333)
T ss_pred cCCCC----ChH-HHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCc-ccccCcHH
Confidence 33221 222 223333334567999999999999988876665543 1233566776421 000 00011222
Q ss_pred c---cc------cccCCCCCCCCCcCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcEee
Q 018637 241 E---PQ------SYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (352)
Q Consensus 241 v---~~------~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~lgV~~~~ 301 (352)
- .. ....+..+.. ...+.-++++++++.++.. .....+. -|+-+-..+...|.+...
T Consensus 218 r~~~~~~~~~l~~~~~~~~i~D-~~~Gfk~~~r~~~~~i~~~--~~~~~~~-fd~Ell~~a~~~g~~I~E 283 (333)
T PTZ00260 218 RNILMYGFHFIVNTICGTNLKD-TQCGFKLFTRETARIIFPS--LHLERWA-FDIEIVMIAQKLNLPIAE 283 (333)
T ss_pred HHHHHHHHHHHHHHHcCCCccc-CCCCeEEEeHHHHHHHhhh--ccccCcc-chHHHHHHHHHcCCCEEE
Confidence 0 00 0111222222 2234468999999988642 2222222 366666666777765444
No 64
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=42.42 E-value=1.1e+02 Score=23.35 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=29.2
Q ss_pred CCCEEEecccccCCCcchHHHHHHHhhhh-cCCcceEEEeCCceeeChHH
Q 018637 159 YDDFILLDIEEEYSKLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDR 207 (352)
Q Consensus 159 y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~ 207 (352)
+.++-.......+..-... ...++.+.+ ..+++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 3455455555555442233 334444433 36899999999999987654
No 65
>PHA03164 hypothetical protein; Provisional
Probab=42.35 E-value=25 Score=26.98 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=13.5
Q ss_pred CcceehhHHHHHHH-HHHHHH
Q 018637 19 RKSTVLIFSCLIIG-IAGFVL 38 (352)
Q Consensus 19 ~~~~~~~~~~~~~~-~~~~~~ 38 (352)
|+-+++++.||+++ +.+++|
T Consensus 56 ktftFlvLtgLaIamILfiif 76 (88)
T PHA03164 56 KTFTFLVLTGLAIAMILFIIF 76 (88)
T ss_pred heeehHHHHHHHHHHHHHHHH
Confidence 35677888888877 444444
No 66
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=36.15 E-value=35 Score=25.40 Aligned_cols=20 Identities=35% Similarity=0.695 Sum_probs=12.9
Q ss_pred ehhHHHHHHH-HHHHHHHHHh
Q 018637 23 VLIFSCLIIG-IAGFVLGISA 42 (352)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~~ 42 (352)
+++++||++| ++||+++---
T Consensus 1 l~iilali~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 1 LLIILALIVGAVIGFFIARKY 21 (64)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 3567788777 5677765443
No 67
>PHA01631 hypothetical protein
Probab=34.04 E-value=1.3e+02 Score=26.70 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCCEEEecccccCCCcchHHHHHHHhhhh---cCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCC
Q 018637 159 YDDFILLDIEEEYSKLPYKTLAFFKAAYA---LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDP 235 (352)
Q Consensus 159 y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~---~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~ 235 (352)
+.+|+...-...++++ ..-.++..+.+ .-+-+.++-+|.|++|+.-. .. .++..++.=|. |. +
T Consensus 39 ~~~Ii~~~t~~e~Rr~--RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~Ci---PA-~-- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRWL--RIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCY---WL-Y-- 104 (176)
T ss_pred CCceEEecccchhHHH--HHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceee---ee-e--
Confidence 5567766544444442 22233333332 24667888999999997432 11 12334444443 22 1
Q ss_pred CCCccccccccCCCCCCCCCcCCeeeecHHHHHHHHHh
Q 018637 236 HLKWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLVAL 273 (352)
Q Consensus 236 ~~Kwyv~~~~y~~~~yP~y~~G~gYvlS~~lv~~l~~~ 273 (352)
.|| .+.+-+||.|.-+++.++.+..|...
T Consensus 105 -~kp--------~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 -YDW--------ANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred -ecC--------CCcEEEEEccccEEeeHHHhHHHHHH
Confidence 111 23445799999999999999998754
No 68
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=32.59 E-value=45 Score=22.54 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=16.2
Q ss_pred eehhHHHHHHHHHHHHHHHHhhh
Q 018637 22 TVLIFSCLIIGIAGFVLGISAFL 44 (352)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~ 44 (352)
-++.|.||+..+++.++++.+++
T Consensus 9 GVIlVF~lVglv~i~iva~~iYR 31 (43)
T PF08114_consen 9 GVILVFCLVGLVGIGIVALFIYR 31 (43)
T ss_pred CeeeehHHHHHHHHHHHHHHHHH
Confidence 35778888877777777776644
No 69
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=31.97 E-value=1.6e+02 Score=28.48 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=55.1
Q ss_pred CCeEEEEEeecCCChHHHHHHHHHHhhCCCEEEeccc--ccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHH
Q 018637 132 TGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIE--EEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLS 209 (352)
Q Consensus 132 ~~v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~--D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 209 (352)
.++.++|+-|.. .....|..=.....-++.+|+. +.+..-+.--..+..|.++-++.++++..|-|+|.-.++..
T Consensus 37 ~~~~vi~~~~~~---~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~ 113 (346)
T COG4092 37 DITMVICLRAHE---VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFA 113 (346)
T ss_pred ccEEEEEEecch---hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHHH
Confidence 345566665543 2344455555555666777765 44444455566777888877899999999999999999999
Q ss_pred HHHh
Q 018637 210 LLLA 213 (352)
Q Consensus 210 ~~L~ 213 (352)
+.|.
T Consensus 114 k~l~ 117 (346)
T COG4092 114 KMLS 117 (346)
T ss_pred HHHH
Confidence 8883
No 70
>PF05777 Acp26Ab: Drosophila accessory gland-specific peptide 26Ab (Acp26Ab); InterPro: IPR008392 This family consists of accessory gland-specific 26Ab peptides or male accessory gland secretory protein 355B from different Drosophila species. Drosophila males, like males of most other insects, transfer a group of specific proteins (Acp26Ab and Acp26Aa in Drosophila) to the females during mating. These proteins are produced primarily in the accessory gland and are likely to influence the female's reproduction [].; GO: 0007617 mating behavior, 0005576 extracellular region
Probab=31.56 E-value=37 Score=26.34 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=17.0
Q ss_pred ceehhHHHHHHHHHHHHHHH
Q 018637 21 STVLIFSCLIIGIAGFVLGI 40 (352)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ 40 (352)
|++|.++|+|.|+.+.-|+=
T Consensus 1 mnyf~~l~if~cicl~~~sd 20 (90)
T PF05777_consen 1 MNYFVVLCIFSCICLWQFSD 20 (90)
T ss_pred CcchhhHHHHHHHHHHHhcc
Confidence 57899999999999888743
No 71
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=31.49 E-value=3.2e+02 Score=27.62 Aligned_cols=93 Identities=14% Similarity=0.303 Sum_probs=52.2
Q ss_pred CeEEEEEeecCCChHHHHHHHHHHhhCCCE---EEecccccCCCcchHHHHHHHhhhhcCCcceEEEeCCceeeChHHHH
Q 018637 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDF---ILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLS 209 (352)
Q Consensus 133 ~v~~~FvlG~~~~~~~~~~l~~E~~~y~DI---l~~d~~D~y~nLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 209 (352)
...++|.+-.++|+.. ..++.=.++|..+ +.+.-.+. .+.-|.-.++-- ++--+++|++..|||+++.++.+.
T Consensus 114 ~~ElLfcv~s~eDpAi-~vv~~Ll~kyp~VdAklf~gG~~v--g~npKInN~mpg-y~~a~ydlvlisDsgI~m~pdtil 189 (431)
T KOG2547|consen 114 KYELLFCVESSEDPAI-EVVERLLKKYPNVDAKLFFGGEKV--GLNPKINNMMPG-YRAAKYDLVLISDSGIFMKPDTIL 189 (431)
T ss_pred ceEEEEEEccCCCcHH-HHHHHHHhhCCCcceEEEEccccc--ccChhhhccCHH-HHHhcCCEEEEecCCeeecCchHH
Confidence 4567788777666543 3344445667643 23222222 222444333321 222356799999999999999999
Q ss_pred HHHhhcCCCCCcEEEEecCCcc
Q 018637 210 LLLAKERPHSQTYLGCMKKGPV 231 (352)
Q Consensus 210 ~~L~~~~~~~~~y~G~~~~~pv 231 (352)
........++. +|-+...|.
T Consensus 190 dm~t~M~shek--malvtq~py 209 (431)
T KOG2547|consen 190 DMATTMMSHEK--MALVTQTPY 209 (431)
T ss_pred HHHHhhhcccc--eeeecCCce
Confidence 88766433222 344444443
No 72
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=29.63 E-value=5.2e+02 Score=25.09 Aligned_cols=107 Identities=11% Similarity=-0.003 Sum_probs=58.4
Q ss_pred CcceEEEeCCceeeCh---HHHHHHHhhcC-----C---CCCcEEEE-ec----CCccccC--CCCCccccccccCCCCC
Q 018637 190 DSEFYVKADDDIYLRP---DRLSLLLAKER-----P---HSQTYLGC-MK----KGPVFTD--PHLKWYEPQSYLLGKEY 251 (352)
Q Consensus 190 ~~~fvlK~DDD~fVn~---~~L~~~L~~~~-----~---~~~~y~G~-~~----~~pv~rd--~~~Kwyv~~~~y~~~~y 251 (352)
+++|++--|||+=|.- +++++..+... | ..+-++.+ +. ...+.|. ....|. .....
T Consensus 116 ~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr~~~~~~~~~------~~~~~ 189 (294)
T PF05212_consen 116 PYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIHHPITKRRPDSEVHRKTRGGPRCC------DDSTG 189 (294)
T ss_pred cceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceeeeeEEeecCCceeEeccCCCCCcC------CCCCC
Confidence 7899999999998874 45555554431 1 11122332 21 1122221 111121 23456
Q ss_pred CCCC---cCCeeeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHh--CCCcEeeC
Q 018637 252 FLHA---YGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLA--MNVNHEDN 302 (352)
Q Consensus 252 P~y~---~G~gYvlS~~lv~~l~~~~~~~~~~~~~EDv~iG~~l~~--lgV~~~~~ 302 (352)
||+. -.++=|+|+++.+.+...-...+.--+==|..+|.|+.. -+|..+|.
T Consensus 190 ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~kiGVVDs 245 (294)
T PF05212_consen 190 PPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKIGVVDS 245 (294)
T ss_pred CCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccEEEEee
Confidence 6644 367788999999887643212222223337888999943 35667773
No 73
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=28.90 E-value=57 Score=27.48 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=20.1
Q ss_pred CCCCcceehhHHHHHHHHHHHHHHHHh
Q 018637 16 PSPRKSTVLIFSCLIIGIAGFVLGISA 42 (352)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (352)
+++-.-.++.++|+++.+++|+++.++
T Consensus 32 ~tpWNysiL~Ls~vvlvi~~~LLgrsi 58 (125)
T PF15048_consen 32 ATPWNYSILALSFVVLVISFFLLGRSI 58 (125)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 344455567788888888899998877
No 74
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.08 E-value=32 Score=31.84 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=16.6
Q ss_pred cccCCCCCCcceehhHHHHHHHHHHHHH
Q 018637 11 RSAASPSPRKSTVLIFSCLIIGIAGFVL 38 (352)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (352)
||+.-.++||.+.++=+.+.++++++++
T Consensus 2 Rf~~r~KrRK~N~iLNiaI~IV~lLIii 29 (217)
T PF07423_consen 2 RFQQRQKRRKTNKILNIAIGIVSLLIII 29 (217)
T ss_pred chhHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 5544467788887766655555444444
No 75
>PRK10018 putative glycosyl transferase; Provisional
Probab=27.03 E-value=5.4e+02 Score=24.29 Aligned_cols=33 Identities=36% Similarity=0.508 Sum_probs=25.7
Q ss_pred HhhhhcCCcceEEEeCCceeeChHHHHHHHhhc
Q 018637 183 KAAYALYDSEFYVKADDDIYLRPDRLSLLLAKE 215 (352)
Q Consensus 183 ~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~ 215 (352)
..+......+|++..|+|..+.++.|..++...
T Consensus 78 N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 78 NQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 333344678999999999999999888777653
No 76
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.51 E-value=77 Score=26.48 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=7.7
Q ss_pred ehhHHHHHHHHHHHHHHHHh
Q 018637 23 VLIFSCLIIGIAGFVLGISA 42 (352)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (352)
+|+++.+++.|.+|+|++..
T Consensus 4 l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444443433
No 77
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=25.19 E-value=3.2e+02 Score=26.11 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=51.2
Q ss_pred CCeEEEEEeecCCC-hHHHHHHHHH----------HhhCCCEEE--ecccccCCCcc-------------hHHHHHH-Hh
Q 018637 132 TGLAFRFIIGRTND-QSKMAELRKE----------VAEYDDFIL--LDIEEEYSKLP-------------YKTLAFF-KA 184 (352)
Q Consensus 132 ~~v~~~FvlG~~~~-~~~~~~l~~E----------~~~y~DIl~--~d~~D~y~nLt-------------~Ktl~~l-~w 184 (352)
..|.+-|+++.+.. ....+.|+.+ ...|+.|.. -||.+.- .++ .+.++-. .|
T Consensus 55 ~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~-~~~~~~RH~~~~Q~~RR~~mAraRN~ 133 (269)
T PF03452_consen 55 ELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQL-SQDRSERHAFEVQRPRRRAMARARNF 133 (269)
T ss_pred hheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccc-cCchhhccchhhHHHHHHHHHHHHHH
Confidence 45788999999873 1223334433 344666543 4665431 111 2222222 23
Q ss_pred hhh---cCCcceEEEeCCceeeChHHHHHHHhhcC
Q 018637 185 AYA---LYDSEFYVKADDDIYLRPDRLSLLLAKER 216 (352)
Q Consensus 185 ~~~---~~~~~fvlK~DDD~fVn~~~L~~~L~~~~ 216 (352)
+.. -+..+||+-.|-|+.-.++.|++-|..++
T Consensus 134 LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 322 25889999999999999999999887753
No 78
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.18 E-value=64 Score=24.43 Aligned_cols=16 Identities=44% Similarity=0.845 Sum_probs=8.3
Q ss_pred hhHHHHHHH-HHHHHHH
Q 018637 24 LIFSCLIIG-IAGFVLG 39 (352)
Q Consensus 24 ~~~~~~~~~-~~~~~~~ 39 (352)
++++||++| ++||+++
T Consensus 9 ~ivl~ll~G~~~G~fia 25 (71)
T COG3763 9 LIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 455566555 4455553
No 79
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=24.83 E-value=4.7e+02 Score=22.81 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=29.3
Q ss_pred HhhhhcCCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEE
Q 018637 183 KAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGC 225 (352)
Q Consensus 183 ~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~ 225 (352)
..+.+....+|++.+|+|..+.++.|...+..........+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 3334455789999999999999988877665543223344454
No 80
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=24.04 E-value=1.2e+02 Score=18.82 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=18.1
Q ss_pred eehhHHHHHHHHHHHHHHHHhhhhcC
Q 018637 22 TVLIFSCLIIGIAGFVLGISAFLYAG 47 (352)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (352)
+.+.-+.+++.++.|+.=+.+++||.
T Consensus 2 ~~~~wls~a~a~~Lf~YLv~ALlRae 27 (29)
T PRK14740 2 TVLDWLSLALATGLFVYLLVALLRAD 27 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445666777777777788888873
No 81
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=23.09 E-value=1e+03 Score=26.11 Aligned_cols=156 Identities=13% Similarity=0.029 Sum_probs=82.2
Q ss_pred eEEEEEeecCCChHHHHHHHHHHhhCCCEEEecccccCCCcchHHHHHHHhhhh-------cC--CcceEEEeCCceeeC
Q 018637 134 LAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYA-------LY--DSEFYVKADDDIYLR 204 (352)
Q Consensus 134 v~~~FvlG~~~~~~~~~~l~~E~~~y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~-------~~--~~~fvlK~DDD~fVn 204 (352)
+.++++.. .+|+...+.+++-.++|+++..+-.... ..+.|.-+ ++|+.. .. +++.++-.|-|+.|.
T Consensus 94 ~eI~vi~~-~nD~~T~~~~~~l~~~~p~~~~v~~~~~--g~~gKa~a-LN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~ 169 (727)
T PRK11234 94 YHIFVGTY-PNDPATQADVDAVCARFPNVHKVVCARP--GPTSKADC-LNNVLDAITQFERSANFAFAGFILHDAEDVIS 169 (727)
T ss_pred eEEEEEec-CCChhHHHHHHHHHHHCCCcEEEEeCCC--CCCCHHHH-HHHHHHHHHhhhcccCCcccEEEEEcCCCCCC
Confidence 45555543 4444445556555677888643333321 22456543 444332 12 345577799999999
Q ss_pred hHHHHHHHhhcCCCCCcEEEEecCCccccCCCCCc----cccccccC---C------C--CCCCCCcCCeeeecHHHHHH
Q 018637 205 PDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKW----YEPQSYLL---G------K--EYFLHAYGPLYALSADVVVS 269 (352)
Q Consensus 205 ~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kw----yv~~~~y~---~------~--~yP~y~~G~gYvlS~~lv~~ 269 (352)
++.|. .+........+.-+-.. |..++ .+.| |.. +|. + . .-+-.++|.|..+++.+++.
T Consensus 170 pd~L~-~~~~l~~~~~~VQ~p~~--p~~~~-~~~~~~~~~~~--EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~a 243 (727)
T PRK11234 170 PMELR-LFNYLVERKDLIQIPVY--PFERE-WTHFTSGTYID--EFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTA 243 (727)
T ss_pred hhHHH-HHHhhcCCCCeEeeccc--CCCcc-HHHHHHHHHHH--HHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHH
Confidence 99997 34333221122111111 21111 0111 111 111 0 0 11335789999999988776
Q ss_pred HHHhh--CcCCCCCCcchHHHHHHHHhCCCcE
Q 018637 270 LVALK--NNSFRMFSNEDVTIGSWMLAMNVNH 299 (352)
Q Consensus 270 l~~~~--~~~~~~~~~EDv~iG~~l~~lgV~~ 299 (352)
+.+.. .......--||.-+|.-+...|.+.
T Consensus 244 l~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v 275 (727)
T PRK11234 244 LLEDGDGIAFDVQSLTEDYDIGFRLKEKGMRE 275 (727)
T ss_pred HHHhcCCCCcCCCcchHHHHHHHHHHHCCCEE
Confidence 76542 0133445589999999999888664
No 82
>PLN02893 Cellulose synthase-like protein
Probab=22.58 E-value=2.9e+02 Score=30.34 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=20.7
Q ss_pred cCCcceEEEeCCceeeC-hHHHHHHHh
Q 018637 188 LYDSEFYVKADDDIYLR-PDRLSLLLA 213 (352)
Q Consensus 188 ~~~~~fvlK~DDD~fVn-~~~L~~~L~ 213 (352)
..+++|++-.|-|+|+| ++.|.+.+-
T Consensus 296 ~TngpfIl~lDcD~y~n~p~~l~~amc 322 (734)
T PLN02893 296 MTNAPIILTLDCDMYSNDPQTPLRALC 322 (734)
T ss_pred cCCCCEEEEecCCcCCCchhHHHHHHH
Confidence 36899999999999986 666766653
No 83
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=22.14 E-value=2e+02 Score=27.00 Aligned_cols=52 Identities=15% Similarity=-0.020 Sum_probs=42.1
Q ss_pred CCCEEEecccccCCCcchHHHHHHHhhhhc-CCc------ceEEEeCCceeeChHHHHHHHhh
Q 018637 159 YDDFILLDIEEEYSKLPYKTLAFFKAAYAL-YDS------EFYVKADDDIYLRPDRLSLLLAK 214 (352)
Q Consensus 159 y~DIl~~d~~D~y~nLt~Ktl~~l~w~~~~-~~~------~fvlK~DDD~fVn~~~L~~~L~~ 214 (352)
+||++.+--.++ +.||....+-+.+| -+. .-|+.+|-|.-+++-+|.+.|+.
T Consensus 37 aG~~vEi~Gp~~----sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~h 95 (293)
T KOG2859|consen 37 AGTLVEISGPGN----SGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRH 95 (293)
T ss_pred cCcEEEEeCCCC----ccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHH
Confidence 789887665544 79999999999887 222 23899999999999999999875
No 84
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=22.00 E-value=1.3e+02 Score=28.08 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=55.9
Q ss_pred CCcceEEEeCCceeeChHHHHHHHhhcCCCCCcEEEEecCCccccCCCCCccccccccCCCCCCCCCcCCeeeecHHHHH
Q 018637 189 YDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYALSADVVV 268 (352)
Q Consensus 189 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~y~G~~~~~pv~rd~~~Kwyv~~~~y~~~~yP~y~~G~gYvlS~~lv~ 268 (352)
-..+-|+-+|||+.++.+.|.......+..+.-.+|.....-.....+++|--.. ...+.|- -...++-++.++-..
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~--~~~~~yS-mvLt~aaf~h~~yl~ 150 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTS--EWSNEYS-MVLTGAAFYHRYYLE 150 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE---SSS--BS-EE-TTEEEEETHHHH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCcccccccc--CCCCcch-hhhhhhHhhcchHHH
Confidence 3678999999999999999987777665555566786521101011334442111 0112221 123455566666655
Q ss_pred HHHHhhCc-----CCCCCCcchHHHHHHHHhC-CCcEee
Q 018637 269 SLVALKNN-----SFRMFSNEDVTIGSWMLAM-NVNHED 301 (352)
Q Consensus 269 ~l~~~~~~-----~~~~~~~EDv~iG~~l~~l-gV~~~~ 301 (352)
........ .-...+-||+.+-.++..+ |-.|+.
T Consensus 151 ~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs~~T~~pPi~ 189 (247)
T PF09258_consen 151 LYTHWLPASIREYVDEHFNCEDIAMNFLVSNLTGKPPIK 189 (247)
T ss_dssp HHHT-S-HHHHHHHHHHTS-HHHHHHHHHHHHHSS-SE-
T ss_pred HHhcCcHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCc
Confidence 33221000 0124689999999877654 655554
No 85
>PRK01844 hypothetical protein; Provisional
Probab=20.49 E-value=89 Score=23.79 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=7.8
Q ss_pred hhHHHHHHH-HHHHHHH
Q 018637 24 LIFSCLIIG-IAGFVLG 39 (352)
Q Consensus 24 ~~~~~~~~~-~~~~~~~ 39 (352)
+.+++|++| ++||+++
T Consensus 9 l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 9 VGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 334555555 4455553
No 86
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=20.12 E-value=1.2e+02 Score=26.26 Aligned_cols=75 Identities=12% Similarity=0.027 Sum_probs=42.9
Q ss_pred cceEEEeCCceeeChHHHHHHHhhcCCCCCc--EEEEecCCccccCCCCCcccc----ccc--------cCCCCCCCCCc
Q 018637 191 SEFYVKADDDIYLRPDRLSLLLAKERPHSQT--YLGCMKKGPVFTDPHLKWYEP----QSY--------LLGKEYFLHAY 256 (352)
Q Consensus 191 ~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~~--y~G~~~~~pv~rd~~~Kwyv~----~~~--------y~~~~yP~y~~ 256 (352)
.+|++..|.|..+.++.|........ .+.+ ..|.+.. .+...+|+.. +.. .....-.-+.+
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~~----~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVRM----YNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLG 164 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEEE----ecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEEC
Confidence 47999999999999999888554432 2222 2222211 2333344211 000 00000112357
Q ss_pred CCeeeecHHHHHHH
Q 018637 257 GPLYALSADVVVSL 270 (352)
Q Consensus 257 G~gYvlS~~lv~~l 270 (352)
|.|.++++++++.+
T Consensus 165 G~~~~~r~~~l~~v 178 (191)
T cd06436 165 GNGQFMRLSALDGL 178 (191)
T ss_pred CeeEEEeHHHHHHh
Confidence 99999999999988
No 87
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=20.07 E-value=45 Score=31.29 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=17.3
Q ss_pred CCCCcceehhHHHHHHHHHHHHHHHHhhhhcC
Q 018637 16 PSPRKSTVLIFSCLIIGIAGFVLGISAFLYAG 47 (352)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (352)
=+|||+.+.+++++++|+....+. ..||+|.
T Consensus 69 LKPrRTklyV~~sV~~CLl~~~L~-iFFLfPR 99 (238)
T PF07092_consen 69 LKPRRTKLYVFLSVLLCLLLSGLV-IFFLFPR 99 (238)
T ss_pred cCCceeEEEeeHHHHHHHHHHHhe-EEEEeCc
Confidence 356666665566666664444442 2457784
Done!