BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018638
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 136/235 (57%), Gaps = 22/235 (9%)
Query: 88 GDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
G + I+ V K + G +RGVSF+IR GE VG++GPSG+GK+TIL++IAGL P KG
Sbjct: 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+V+I G++ ++D +GLVFQ+ ALF +TV +NV F L E +DE +
Sbjct: 71 DVWIGGKR----VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE-MDAR 125
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
V+E L + L+ +R P ELSGG ++RVALAR++ + P+VLL+DEP A +D
Sbjct: 126 VRELLRFMRLESYANRFPHELSGGQQQRVALARAL-------APRPQVLLFDEPFAAIDT 178
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+ +R VH E G+ + V VTH DR++ L+EG +
Sbjct: 179 QIRRELRTFVRQVHD--EMGVTS-------VFVTHDQEEALEVADRVLVLHEGNV 224
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 130/237 (54%), Gaps = 21/237 (8%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+ID + KSFG +L+G++ IR GE V +IGPSG+GKST L+ + L D+GE+ I
Sbjct: 3 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 62
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G D ++ +R +G+VFQ LF +TV N+ + K E+
Sbjct: 63 DGINLKA--KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM 120
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L VGLK P LSGG +RVA+AR++ ++EP+++L+DEPT+ LDP
Sbjct: 121 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL-------AMEPKIMLFDEPTSALDP-- 171
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
V E L SV K+ LAN G + VVVTH+ R DR++F+ G I+ +G
Sbjct: 172 EMVGEVL--SVMKQ----LANEG--MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG 220
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 130/237 (54%), Gaps = 21/237 (8%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+ID + KSFG +L+G++ IR GE V +IGPSG+GKST L+ + L D+GE+ I
Sbjct: 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G D ++ +R +G+VFQ LF +TV N+ + K E+
Sbjct: 84 DGINLKA--KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM 141
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L VGLK P LSGG +RVA+AR++ ++EP+++L+DEPT+ LDP
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL-------AMEPKIMLFDEPTSALDP-- 192
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
V E L SV K+ LAN G + VVVTH+ R DR++F+ G I+ +G
Sbjct: 193 EMVGEVL--SVMKQ----LANEG--MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG 241
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 140/259 (54%), Gaps = 26/259 (10%)
Query: 90 VLIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
V I +NV K F G+ L V+ I +GE GI+GPSG GK+T ++IIAGL P GE
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 148 VYIRGRKRAG---LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
+Y R A LI E +IG+VFQ+ AL+ +LT EN+ F L N KM E+I
Sbjct: 62 LYFDDRLVASNGKLIVPPE--DRKIGMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIR 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
+ V+E + + V + P ELSGG ++RVALAR+++ D P +LL DEP + L
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKD-------PSLLLLDEPFSNL 171
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
D + D R++ K+ ++ L + +VV+H + I DR+ L +GK+V
Sbjct: 172 D----ARMRDSARALVKEVQSRLG-----VTLLVVSHDPADIFAIADRVGVLVKGKLVQV 222
Query: 325 GMTHEFTSSSNPIVQQFAS 343
G + NP+ Q AS
Sbjct: 223 GKPEDLY--DNPVSIQVAS 239
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 139/259 (53%), Gaps = 26/259 (10%)
Query: 90 VLIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
V I +NV K F G+ L V+ I +GE GI+GPSG GK+T ++IIAGL P GE
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 148 VYIRGRKRAG---LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
+Y R A LI E +IG+VFQ+ AL+ +LT EN+ F L N KM E+I
Sbjct: 62 LYFDDRLVASNGKLIVPPE--DRKIGMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIR 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
+ V+E + + V + P ELSG ++RVALAR+++ D P +LL DEP + L
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD-------PSLLLLDEPFSNL 171
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
D + D R++ K+ ++ L + +VV+H + I DR+ L +GK+V
Sbjct: 172 D----ARMRDSARALVKEVQSRLG-----VTLLVVSHDPADIFAIADRVGVLVKGKLVQV 222
Query: 325 GMTHEFTSSSNPIVQQFAS 343
G + NP+ Q AS
Sbjct: 223 GKPEDLY--DNPVSIQVAS 239
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 133/251 (52%), Gaps = 22/251 (8%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I N+ K FG+ + GVSF+++ GE V ++GPSG GK+T L ++AG+ P GE+Y
Sbjct: 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
L++D +G+VFQ+ AL+ +TV EN+ F L +DE + + V E
Sbjct: 64 D----VLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDE-VEKRVVEIA 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+ + + DR P++LSGG ++RVALAR+++ +P+VLL+DEP + LD +
Sbjct: 119 RKLLIDNLLDRKPTQLSGGQQQRVALARALV-------KQPKVLLFDEPLSNLDANLRMI 171
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-F 330
+ I+ H + E G+ + V VTH + R+ +GK+V G E +
Sbjct: 172 MRAEIK--HLQQELGITS-------VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY 222
Query: 331 TSSSNPIVQQF 341
S N V F
Sbjct: 223 DSPKNMFVASF 233
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 132/260 (50%), Gaps = 24/260 (9%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V I N+ K FG L ++ KI+ GE + ++GPSG+GKST+L IAG+ P G++Y
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
+ L + +GLVFQ+ AL+ +TV +N+ F L E K E+I + V+E
Sbjct: 62 FDEKDVTELPPKDR----NVGLVFQNWALYPHMTVYKNIAFPL-ELRKAPREEIDKKVRE 116
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+ + + +R P +LSGG ++RVA+AR+++ EPEVLL DEP + LD +
Sbjct: 117 VAKMLHIDKLLNRYPWQLSGGQQQRVAIARALV-------KEPEVLLLDEPLSNLDALLR 169
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
V ++ + K E G+ V VTH + DR+ + EG+I+ G E
Sbjct: 170 LEVRAELKRLQK--ELGITT-------VYVTHDQAEALAMADRIAVIREGEILQVGTPDE 220
Query: 330 FTSSSNPIVQQFASGSLEGP 349
+F G L P
Sbjct: 221 VYYKPK---YKFVGGFLGNP 237
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 144/270 (53%), Gaps = 25/270 (9%)
Query: 85 EDDGDVLIDCRNVYKSF--GEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
+DD +I N+ K F G + I L VS + G+ G+IG SG GKST+++ + L
Sbjct: 18 DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 141 LAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKM 198
P +G V + G++ L S+ E++ R IG++FQ L S TV NV L ++
Sbjct: 78 ERPTEGSVLVDGQELTTL-SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP 136
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+DE + V E L+ VGL D PS LSGG K+RVA+AR++ + P+VLL D
Sbjct: 137 KDE-VKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL-------ASNPKVLLCD 188
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
+ T+ LDP + + +L++ ++++ GL + +++TH+ ++R D + +
Sbjct: 189 QATSALDPATTRSILELLKDINRRL--GL-------TILLITHEMDVVKRICDCVAVISN 239
Query: 319 GKIVWQGMTHE-FTSSSNPIVQQFASGSLE 347
G+++ Q E F+ P+ Q+F +L
Sbjct: 240 GELIEQDTVSEVFSHPKTPLAQKFIQSTLH 269
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 141/264 (53%), Gaps = 25/264 (9%)
Query: 91 LIDCRNVYKSF--GEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I N+ K F G + I L VS + G+ G+IG SG GKST+++ + L P +G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
V + G++ L S+ E++ R IG++FQ L S TV NV L ++ +DE +
Sbjct: 61 SVLVDGQELTTL-SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE-VK 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V E L+ VGL D PS LSGG K+RVA+AR++ + P+VLL DE T+ L
Sbjct: 119 RRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL-------ASNPKVLLCDEATSAL 171
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
DP + + +L++ ++++ GL + +++TH+ ++R D + + G+++ Q
Sbjct: 172 DPATTRSILELLKDINRRL--GL-------TILLITHEMDVVKRICDCVAVISNGELIEQ 222
Query: 325 GMTHE-FTSSSNPIVQQFASGSLE 347
E F+ P+ Q+F +L
Sbjct: 223 DTVSEVFSHPKTPLAQKFIQSTLH 246
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 142/270 (52%), Gaps = 25/270 (9%)
Query: 85 EDDGDVLIDCRNVYKSF--GEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
+DD I N+ K F G + I L VS + G+ G+IG SG GKST+++ + L
Sbjct: 18 DDDDKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 141 LAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKM 198
P +G V + G++ L S+ E++ R IG +FQ L S TV NV L ++
Sbjct: 78 ERPTEGSVLVDGQELTTL-SESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTP 136
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+DE + V E L+ VGL D PS LSGG K+RVA+AR++ + P+VLL D
Sbjct: 137 KDE-VKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL-------ASNPKVLLCD 188
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
+ T+ LDP + + +L++ ++++ GL + +++TH+ ++R D + +
Sbjct: 189 QATSALDPATTRSILELLKDINRRL--GL-------TILLITHEXDVVKRICDCVAVISN 239
Query: 319 GKIVWQGMTHE-FTSSSNPIVQQFASGSLE 347
G+++ Q E F+ P+ Q+F +L
Sbjct: 240 GELIEQDTVSEVFSHPKTPLAQKFIQSTLH 269
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 137/254 (53%), Gaps = 30/254 (11%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
+V+K FGE +R +S +++ GE + ++GPSG GK+T L++IAGL P +G++YI G K
Sbjct: 8 DVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDK- 65
Query: 156 AGLISDEEISGL-------RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
L++D E G+ I +VFQS AL+ +TV +N+ F L + K+ ++I + V+
Sbjct: 66 --LVADPE-KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL-KLRKVPRQEIDQRVR 121
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E +GL + +R P ELSGG ++RVAL R+I+ +P+V L DEP + LD A
Sbjct: 122 EVAELLGLTELLNRKPRELSGGQRQRVALGRAIV-------RKPQVFLMDEPLSNLD--A 172
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
V +R+ KK + L + + VTH DR+ + G + G
Sbjct: 173 KLRVR--MRAELKKLQRQLG-----VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD 225
Query: 329 E-FTSSSNPIVQQF 341
E + +N V F
Sbjct: 226 EVYDKPANTFVAGF 239
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 124/239 (51%), Gaps = 21/239 (8%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +NV K++GE + + ++ I GE V +GPSG GKST+L++IAGL G+++I
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI- 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G KR ++D + +G+VFQS AL+ L+V EN+ F L + + + E I++ V +
Sbjct: 63 GEKR---MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGL-KLAGAKKEVINQRVNQVA 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+ L + DR P LSGG ++RVA+ R+++ EP V L DEP + LD
Sbjct: 119 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLV-------AEPSVFLLDEPLSNLDAALRVQ 171
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+ I +HK+ + + VTH D+++ L G++ G E
Sbjct: 172 MRIEISRLHKRLGR---------TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 124/239 (51%), Gaps = 21/239 (8%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +NV K++GE + + ++ I GE V +GPSG GKST+L++IAGL G+++I
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI- 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G KR ++D + +G+VFQS AL+ L+V EN+ F L + + + E I++ V +
Sbjct: 63 GEKR---MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGL-KLAGAKKEVINQRVNQVA 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+ L + DR P LSGG ++RVA+ R+++ EP V L DEP + LD
Sbjct: 119 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLV-------AEPSVFLLDEPLSNLDAALRVQ 171
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+ I +HK+ + + VTH D+++ L G++ G E
Sbjct: 172 MRIEISRLHKRLGR---------TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 124/239 (51%), Gaps = 21/239 (8%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +NV K++GE + + ++ I GE V +GPSG GKST+L++IAGL G+++I
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI- 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G KR ++D + +G+VFQS AL+ L+V EN+ F L + + + E I++ V +
Sbjct: 63 GEKR---MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGL-KLAGAKKEVINQRVNQVA 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+ L + DR P LSGG ++RVA+ R+++ EP V L D+P + LD
Sbjct: 119 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLV-------AEPSVFLLDQPLSNLDAALRVQ 171
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+ I +HK+ + + VTH D+++ L G++ G E
Sbjct: 172 MRIEISRLHKRLGR---------TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 144/266 (54%), Gaps = 32/266 (12%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
+++K +G +L+GVS + R G+ + IIG SG+GKST L+ I L P +G + + G +
Sbjct: 11 DLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG-QN 69
Query: 156 AGLISDEE------------ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
L+ D++ + R+ +VFQ L+ +TV ENV + +
Sbjct: 70 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA 129
Query: 204 SELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
E + LA VG+ + + + P LSGG ++RV++AR++ ++EP+VLL+DEPT+
Sbjct: 130 RERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL-------AMEPDVLLFDEPTS 182
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LDP +V +++R + + E G + VVVTH+ R +IFL++GKI
Sbjct: 183 ALDP---ELVGEVLRIMQQLAEEG-------KTMVVVTHEMGFARHVSSHVIFLHQGKIE 232
Query: 323 WQGMTHE-FTSSSNPIVQQFASGSLE 347
+G + F + +P +QQF GSL+
Sbjct: 233 EEGDPEQVFGNPQSPRLQQFLKGSLK 258
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 131/260 (50%), Gaps = 30/260 (11%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
N++K FG+ ++ +S +I+ GE + ++GPSG GK+T L+ IAGL P +G++YI
Sbjct: 11 NIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIED--- 67
Query: 156 AGLISDEEISGL------RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
L++D E + VFQS AL+ TV +N+ F L + K+ ++I + V+E
Sbjct: 68 -NLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPL-KLRKVPKQEIDKRVRE 125
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+GL + +R P ELSGG ++RVAL R+II P+V L DEP + LD A
Sbjct: 126 VAEXLGLTELLNRKPRELSGGQRQRVALGRAII-------RRPKVFLXDEPLSNLD--AK 176
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
V+ R+ KK + L + + VTH DR+ +G++ G E
Sbjct: 177 LRVK--XRAELKKLQRQLG-----VTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDE 229
Query: 330 FTSSSNPIVQQFASGSLEGP 349
V F +G + P
Sbjct: 230 VYYKP---VNTFVAGFIGSP 246
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 134/245 (54%), Gaps = 36/245 (14%)
Query: 91 LIDCRNVYKSF--GEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I +NV K++ GE+ I L+ V+ I+ GE V I+GPSG+GKST+L II L P +G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLL---YENSKMRD 200
EVYI K L D+E++ +R IG VFQ L LT ENV L Y + +
Sbjct: 61 EVYIDNIKTNDL-DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 201 EQISELVKENLAAVGLKGVEDRL----PSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256
E+ K L + + +E+R P++LSGG ++RVA+AR++ + P ++L
Sbjct: 120 ER----RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL-------ANNPPIIL 168
Query: 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316
D+PT LD + L++ +++ E+G + VVVTH + R +R+I+L
Sbjct: 169 ADQPTGALDSKTGEKIMQLLKKLNE--EDG-------KTVVVVTHDINVARFG-ERIIYL 218
Query: 317 YEGKI 321
+G++
Sbjct: 219 KDGEV 223
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 21/248 (8%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V + N+ K FG + ++ I+ GE + ++GPSG GK+T L++IAGL P +G +Y
Sbjct: 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
R L + I +VFQS A++ +TV EN+ F L + K ++I + V+
Sbjct: 70 FGDRDVTYLPPKDR----NISMVFQSYAVWPHMTVYENIAFPL-KIKKFPKDEIDKRVRW 124
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+ ++ + +R P++LSGG ++RVA+AR+I+ VEP+VLL DEP + LD
Sbjct: 125 AAELLQIEELLNRYPAQLSGGQRQRVAVARAIV-------VEPDVLLMDEPLSNLDAKLR 177
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ I+ + +K + + + VTH DR+ + G+++ G E
Sbjct: 178 VAMRAEIKKLQQKLK---------VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 228
Query: 330 FTSSSNPI 337
N +
Sbjct: 229 VYLRPNSV 236
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 21/248 (8%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V + N+ K FG + ++ I+ GE + ++GPSG GK+T L++IAGL P +G +Y
Sbjct: 11 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 70
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
R L + I +VFQS A++ +TV EN+ F L + K ++I + V+
Sbjct: 71 FGDRDVTYLPPKDR----NISMVFQSYAVWPHMTVYENIAFPL-KIKKFPKDEIDKRVRW 125
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+ ++ + +R P++LSGG ++RVA+AR+I+ VEP+VLL DEP + LD
Sbjct: 126 AAELLQIEELLNRYPAQLSGGQRQRVAVARAIV-------VEPDVLLMDEPLSNLDAKLR 178
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ I+ + +K + + + VTH DR+ + G+++ G E
Sbjct: 179 VAMRAEIKKLQQKLK---------VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 229
Query: 330 FTSSSNPI 337
N +
Sbjct: 230 VYLRPNSV 237
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 121/237 (51%), Gaps = 27/237 (11%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
EK L VS I GE + + G +G+GKST+L+I+AGL+ P G+V G ++ G
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---- 74
Query: 163 EISGLRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL--KGV 219
EI IG+ FQ F + V + V F + RD LVK+ + VGL
Sbjct: 75 EIRR-NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP--VPLVKKAMEFVGLDFDSF 131
Query: 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279
+DR+P LSGG K+RVA+A I+ EP++L+ DEP GLD T DL+R V
Sbjct: 132 KDRVPFFLSGGEKRRVAIASVIVH-------EPDILILDEPLVGLDREGKT---DLLRIV 181
Query: 280 HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNP 336
K G + ++++H T+ VDR++ L +GK V+ G EF +P
Sbjct: 182 EKWKTLG-------KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDP 231
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 121/237 (51%), Gaps = 27/237 (11%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
EK L VS I GE + + G +G+GKST+L+I+AGL+ P G+V G ++ G
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---- 76
Query: 163 EISGLRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL--KGV 219
EI IG+ FQ F + V + V F + RD LVK+ + VGL
Sbjct: 77 EIRR-NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP--VPLVKKAMEFVGLDFDSF 133
Query: 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279
+DR+P LSGG K+RVA+A I+ EP++L+ DEP GLD T DL+R V
Sbjct: 134 KDRVPFFLSGGEKRRVAIASVIVH-------EPDILILDEPLVGLDREGKT---DLLRIV 183
Query: 280 HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNP 336
K G + ++++H T+ VDR++ L +GK V+ G EF +P
Sbjct: 184 EKWKTLG-------KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDP 233
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 134/245 (54%), Gaps = 36/245 (14%)
Query: 91 LIDCRNVYKSF--GEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
++ +NV K++ GE+ I L+ V+ I+ GE V I+GPSG+GKST+L II L P +G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLL---YENSKMRD 200
EVYI K L D+E++ +R IG VFQ L LT ENV L Y + +
Sbjct: 61 EVYIDNIKTNDL-DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 201 EQISELVKENLAAVGLKGVEDRL----PSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256
E+ K L + + +E+R P++LSGG ++RVA+AR++ + P ++L
Sbjct: 120 ER----RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL-------ANNPPIIL 168
Query: 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316
D+PT LD + L++ +++ E+G + VVVTH + R +R+I+L
Sbjct: 169 ADQPTWALDSKTGEKIMQLLKKLNE--EDG-------KTVVVVTHDINVARFG-ERIIYL 218
Query: 317 YEGKI 321
+G++
Sbjct: 219 KDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 130/244 (53%), Gaps = 36/244 (14%)
Query: 92 IDCRNVYKSF--GEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
I +NV K++ GE+ I L+ V+ I+ GE V I GPSG+GKST L II L P +GE
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 148 VYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLL---YENSKMRDE 201
VYI K L D+E++ +R IG VFQ L LT ENV L Y + +E
Sbjct: 62 VYIDNIKTNDL-DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEE 120
Query: 202 QISELVKENLAAVGLKGVEDRL----PSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ K L + +E+R P++LSGG ++RVA+AR++ + P ++L
Sbjct: 121 R----RKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARAL-------ANNPPIILA 169
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317
DEPT LD + L++ +++ E+G + VVVTH + R +R+I+L
Sbjct: 170 DEPTGALDSKTGEKIXQLLKKLNE--EDG-------KTVVVVTHDINVARFG-ERIIYLK 219
Query: 318 EGKI 321
+G++
Sbjct: 220 DGEV 223
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 23/237 (9%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ N+ K IL+G+S ++ GE V IIG SG+GKST+L I+ L AP +G+V++
Sbjct: 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 151 RGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
G K +++E+S LR +G VFQ L LT ENV + + K + E E
Sbjct: 64 EG-KEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEA-KERG 121
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
+ L+ +GL R P ELSGG ++RVA+AR++ + EP +L DEPT LD
Sbjct: 122 EYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL-------ANEPILLFADEPTGNLDSA 174
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
+ V D+ +++ G S V+VTH+ + R + + +GK+V +
Sbjct: 175 NTKRVMDIFLKINEGG----------TSIVMVTHERE-LAELTHRTLEMKDGKVVGE 220
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 28/233 (12%)
Query: 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157
+K+F L +S K+ GE I+GP+G GK+ L++IAG PD G + + G+
Sbjct: 11 WKNFS----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD--- 63
Query: 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217
++D I V+Q+ +LF + V++N+ F +M+ + + V + + ++
Sbjct: 64 -VTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF----GMRMKKIKDPKRVLDTARDLKIE 118
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
+ DR P LSGG ++RVALAR+++ + P++LL DEP + LDP +++
Sbjct: 119 HLLDRNPLTLSGGEQQRVALARALVTN-------PKILLLDEPLSALDPRTQENAREMLS 171
Query: 278 SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+HKK N + + +TH + R DR+ + +GK++ G E
Sbjct: 172 VLHKK---------NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 28/231 (12%)
Query: 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRAGLIS 160
H L+G++ I+ GE I+G +G GKST+ + G+L P G + + R G++
Sbjct: 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81
Query: 161 DEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218
E IG+VFQ LF S +V ++V F N K+ +++I + V L G++
Sbjct: 82 LRE----SIGIVFQDPDNQLF-SASVYQDVSFGAV-NMKLPEDEIRKRVDNALKRTGIEH 135
Query: 219 VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278
++D+ LS G KKRVA+A ++ +EP+VL+ DEPTAGLDP+ + + L+
Sbjct: 136 LKDKPTHCLSFGQKKRVAIAGVLV-------MEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 279 VHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ K E G+ + ++ TH + D + + EG+++ QG E
Sbjct: 189 MQK--ELGI-------TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 230
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
++ KSF +L +S + GE + IIG SG GK+T+L+ +AG PD GE+ + G+
Sbjct: 9 HLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
++ + R+G + Q LF LTV N+ + L N K R Q + ++ L G
Sbjct: 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGL-GNGKGRTAQERQRIEAMLELTG 127
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD-PIASTVVED 274
+ + R P ELSGG ++R ALAR++ D PE++L DEP + LD + + ED
Sbjct: 128 ISELAGRYPHELSGGQQQRAALARALAPD-------PELILLDEPFSALDEQLRRQIRED 180
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+I ++ G+ S V V+H + DR+ + +G+I+ HE
Sbjct: 181 MIAALRANGK----------SAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 125/254 (49%), Gaps = 36/254 (14%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ N+ K FGE L GVS + G+ IIGP+G+GKST++ +I G L D+G VY
Sbjct: 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66
Query: 151 RGRKRAGLISDEEISGL-RIGLV--FQSAALFDSLTVREN------------VGFLLYEN 195
+ I+++E + L G+V FQ+ +TV EN + L Y+
Sbjct: 67 ENKD----ITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK 122
Query: 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255
++E++ E + L + L + DR ELSGG K V + R+++ + P+++
Sbjct: 123 WIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN-------PKMI 175
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
+ DEP AG+ P + + + + + KG +++++ H+ + +D L
Sbjct: 176 VMDEPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHLYV 225
Query: 316 LYEGKIVWQGMTHE 329
++ G+I+ +G E
Sbjct: 226 MFNGQIIAEGRGEE 239
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 125/254 (49%), Gaps = 36/254 (14%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ N+ K FGE L GVS + G+ IIGP+G+GKST++ +I G L D+G VY
Sbjct: 7 ILRTENIVKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66
Query: 151 RGRKRAGLISDEEISGL-RIGLV--FQSAALFDSLTVREN------------VGFLLYEN 195
+ I+++E + L G+V FQ+ +TV EN + L Y+
Sbjct: 67 ENKD----ITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKK 122
Query: 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255
++E++ E + L + L + DR ELSGG K V + R+++ + P+++
Sbjct: 123 WIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN-------PKMI 175
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
+ DEP AG+ P + + + + + KG +++++ H+ + +D L
Sbjct: 176 VMDEPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHLYV 225
Query: 316 LYEGKIVWQGMTHE 329
++ G+I+ +G E
Sbjct: 226 MFNGQIIAEGRGEE 239
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 23/223 (10%)
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181
++GP+G GKS L++IAG++ PD+GEV + G L + IG V Q ALF
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR----GIGFVPQDYALFPH 84
Query: 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241
L+V N+ + L ++ ++ + E L G+ + DR P+ LSGG ++RVALAR++
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKL---GIAHLLDRKPARLSGGERQRVALARAL 141
Query: 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+ ++P +LL DEP + +D V+ + +R V ++ + + + VTH
Sbjct: 142 V-------IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH---------VTH 185
Query: 302 QHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 344
D + + G+IV +G E S+ N V +F S
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 36/254 (14%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ N+ K FGE L GVS + G+ IIGP+G+GKST++ +I G L D+G VY
Sbjct: 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66
Query: 151 RGRKRAGLISDEEISGL-RIGLV--FQSAALFDSLTVREN------------VGFLLYEN 195
+ I+++E + L G+V FQ+ +TV EN + L Y+
Sbjct: 67 ENKD----ITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKK 122
Query: 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255
++E++ E + L + L + DR ELSGG K V + R+++ + P+++
Sbjct: 123 WIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN-------PKMI 175
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
+ D+P AG+ P + + + + + KG +++++ H+ + +D L
Sbjct: 176 VMDQPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHLYV 225
Query: 316 LYEGKIVWQGMTHE 329
++ G+I+ +G E
Sbjct: 226 MFNGQIIAEGRGEE 239
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 48/242 (19%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
IL ++ I+ GE +GI+G SG+GKST+ K+I P+ G+V I G A ++D
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA--LADPNWL 75
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ-------------ISELVKENLA 212
++G+V Q L + ++ +N+ N M E+ ISEL +
Sbjct: 76 RRQVGVVLQDNVLLNR-SIIDNISL---ANPGMSVEKVIYAAKLAGAHDFISELREGYNT 131
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VG +G + LSGG ++R+A+AR+++ + P++L++DE T+ LD + V+
Sbjct: 132 IVGEQG------AGLSGGQRQRIAIARALVNN-------PKILIFDEATSALDYESEHVI 178
Query: 273 EDLIRSVHK--KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+R++HK KG + +++ H+ ST++ A DR+I + +GKIV QG E
Sbjct: 179 ---MRNMHKICKGR----------TVIIIAHRLSTVKNA-DRIIVMEKGKIVEQGKHKEL 224
Query: 331 TS 332
S
Sbjct: 225 LS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 48/242 (19%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
IL ++ I+ GE +GI+G SG+GKST+ K+I P+ G+V I G A ++D
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA--LADPNWL 81
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ-------------ISELVKENLA 212
++G+V Q L + ++ +N+ N M E+ ISEL +
Sbjct: 82 RRQVGVVLQDNVLLNR-SIIDNISL---ANPGMSVEKVIYAAKLAGAHDFISELREGYNT 137
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VG +G + LSGG ++R+A+AR+++ + P++L++DE T+ LD + V+
Sbjct: 138 IVGEQG------AGLSGGQRQRIAIARALVNN-------PKILIFDEATSALDYESEHVI 184
Query: 273 EDLIRSVHK--KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+R++HK KG + +++ H+ ST++ A DR+I + +GKIV QG E
Sbjct: 185 ---MRNMHKICKGR----------TVIIIAHRLSTVKNA-DRIIVMEKGKIVEQGKHKEL 230
Query: 331 TS 332
S
Sbjct: 231 LS 232
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 48/242 (19%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
IL ++ I+ GE +GI+G SG+GKST+ K+I P+ G+V I G A ++D
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA--LADPNWL 77
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ-------------ISELVKENLA 212
++G+V Q L + ++ +N+ N M E+ ISEL +
Sbjct: 78 RRQVGVVLQDNVLLNR-SIIDNISL---ANPGMSVEKVIYAAKLAGAHDFISELREGYNT 133
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VG +G + LSGG ++R+A+AR+++ + P++L++DE T+ LD + V+
Sbjct: 134 IVGEQG------AGLSGGQRQRIAIARALVNN-------PKILIFDEATSALDYESEHVI 180
Query: 273 EDLIRSVHK--KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+R++HK KG + +++ H+ ST++ A DR+I + +GKIV QG E
Sbjct: 181 ---MRNMHKICKGR----------TVIIIAHRLSTVKNA-DRIIVMEKGKIVEQGKHKEL 226
Query: 331 TS 332
S
Sbjct: 227 LS 228
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 125/241 (51%), Gaps = 29/241 (12%)
Query: 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153
+++ K G+K IL+G+SF+I GE G+IGP+G GK+T L+II+ L+ P G V + G+
Sbjct: 18 VKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK 77
Query: 154 KRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKE 209
EE +R I + + A + ++ E + F+ Y +S E++ E E
Sbjct: 78 NVV-----EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE 132
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+A +G K ++DR+ S S GM +++ +AR+++ V P + + DEPT+GLD + +
Sbjct: 133 -IAGLGEK-IKDRV-STYSKGMVRKLLIARALM-------VNPRLAILDEPTSGLDVLNA 182
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
V +++ ++G + +V +H + DR+ ++ G IV G E
Sbjct: 183 REVRKILKQASQEG----------LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 232
Query: 330 F 330
Sbjct: 233 L 233
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 126/242 (52%), Gaps = 48/242 (19%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
IL ++ I+ GE +GI+G SG+GKST+ K+I P+ G+V I G A ++D
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA--LADPNWL 81
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ-------------ISELVKENLA 212
++G+V Q L + ++ +N+ N M E+ ISEL +
Sbjct: 82 RRQVGVVLQDNVLLNR-SIIDNISL---ANPGMSVEKVIYAAKLAGAHDFISELREGYNT 137
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VG +G + LSGG ++R+A+AR+++ + P++L++D+ T+ LD + V+
Sbjct: 138 IVGEQG------AGLSGGQRQRIAIARALVNN-------PKILIFDQATSALDYESEHVI 184
Query: 273 EDLIRSVHK--KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+R++HK KG + +++ H+ ST++ A DR+I + +GKIV QG E
Sbjct: 185 ---MRNMHKICKGR----------TVIIIAHRLSTVKNA-DRIIVMEKGKIVEQGKHKEL 230
Query: 331 TS 332
S
Sbjct: 231 LS 232
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 126/242 (52%), Gaps = 48/242 (19%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
IL ++ I+ GE +GI+G +G+GKST+ K+I P+ G+V I G A ++D
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLA--LADPNWL 77
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ-------------ISELVKENLA 212
++G+V Q L + ++ +N+ N M E+ ISEL +
Sbjct: 78 RRQVGVVLQDNVLLNR-SIIDNISL---ANPGMSVEKVIYAAKLAGAHDFISELREGYNT 133
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VG +G + LSGG ++R+A+AR+++ + P++L++DE T+ LD + V+
Sbjct: 134 IVGEQG------AGLSGGQRQRIAIARALVNN-------PKILIFDEATSALDYESEHVI 180
Query: 273 EDLIRSVHK--KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+R++HK KG + +++ H+ ST++ A DR+I + +GKIV QG E
Sbjct: 181 ---MRNMHKICKGR----------TVIIIAHRLSTVKNA-DRIIVMEKGKIVEQGKHKEL 226
Query: 331 TS 332
S
Sbjct: 227 LS 228
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 48/242 (19%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
IL ++ I+ GE +GI+G SG+GKST+ K+I P+ G+V I G A ++D
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA--LADPNWL 75
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ-------------ISELVKENLA 212
++G+V Q L + ++ +N+ N M E+ ISEL +
Sbjct: 76 RRQVGVVLQDNVLLNR-SIIDNISL---ANPGMSVEKVIYAAKLAGAHDFISELREGYNT 131
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VG +G + LSGG ++R+A+AR+++ + P++L++DE T+ LD + V+
Sbjct: 132 IVGEQG------AGLSGGQRQRIAIARALVNN-------PKILIFDEATSALDYESEHVI 178
Query: 273 EDLIRSVHK--KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+R++HK KG + +++ + ST++ A DR+I + +GKIV QG E
Sbjct: 179 ---MRNMHKICKGR----------TVIIIAARLSTVKNA-DRIIVMEKGKIVEQGKHKEL 224
Query: 331 TS 332
S
Sbjct: 225 LS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 48/242 (19%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
IL ++ I+ GE +GI+G SG+GKST+ K+I P+ G+V I G A ++D
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA--LADPNWL 81
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ-------------ISELVKENLA 212
++G+V Q L + ++ +N+ N M E+ ISEL +
Sbjct: 82 RRQVGVVLQDNVLLNR-SIIDNISL---ANPGMSVEKVIYAAKLAGAHDFISELREGYNT 137
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VG +G + LSGG ++R+A+AR+++ + P++L++DE T+ LD + V+
Sbjct: 138 IVGEQG------AGLSGGQRQRIAIARALVNN-------PKILIFDEATSALDYESEHVI 184
Query: 273 EDLIRSVHK--KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+R++HK KG + +++ + ST++ A DR+I + +GKIV QG E
Sbjct: 185 ---MRNMHKICKGR----------TVIIIAARLSTVKNA-DRIIVMEKGKIVEQGKHKEL 230
Query: 331 TS 332
S
Sbjct: 231 LS 232
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 136/266 (51%), Gaps = 37/266 (13%)
Query: 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
++ R+V ++ + + ILR +SF+ + + GPSG GKSTI ++ P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G+ I + + R IG V Q +A+ T+REN+ + L DE + +++
Sbjct: 61 IDGQP----IDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL--EGDYTDEDLWQVL 113
Query: 208 KENLAAVGLKGVEDRLPSE-------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
A ++ + D+L +E +SGG ++R+A+AR+ + + P++L+ DE
Sbjct: 114 DLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN-------PKILMLDEA 166
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
TA LD + ++V+ + S+ K + +V+ H+ STI A D++ F+ +G+
Sbjct: 167 TASLDSESESMVQKALDSLMKG-----------RTTLVIAHRLSTIVDA-DKIYFIEKGQ 214
Query: 321 IVWQGMTHEFTSSSNPIVQQFASGSL 346
I G +E +++P+ ++ S L
Sbjct: 215 ITGSGKHNELV-ATHPLYAKYVSEQL 239
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 137/282 (48%), Gaps = 51/282 (18%)
Query: 83 EPEDDGDVL--------IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTI 133
E +DD D + I+ +NV+ S+ +K +L+ ++F I+ G+ V ++GP+G+GK+TI
Sbjct: 338 EEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTI 397
Query: 134 LKIIAGLLAPDKGEVY-----IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188
+ ++ D+G++ IR KR+ L S IG+V Q LF S TV+EN
Sbjct: 398 VNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS-------IGIVLQDTILF-STTVKEN- 448
Query: 189 GFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPS---ELSGGMKKRVALARSI 241
L Y N DE+I E K + +K G E L +LS G ++ +A+ R+
Sbjct: 449 --LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF 506
Query: 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+ P++L+ DE T+ +D T E I++ K G + +++ H
Sbjct: 507 L-------ANPKILILDEATSNVD----TKTEKSIQAAMWKLMEG-------KTSIIIAH 548
Query: 302 QHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 343
+ +TI+ A D +I L +G+IV G E + F S
Sbjct: 549 RLNTIKNA-DLIIVLRDGEIVEMGKHDELIQKRGFYYELFTS 589
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 124/238 (52%), Gaps = 45/238 (18%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+G+S +++ G+ + ++G SG GKST+++++ P G V++ G++ I +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE----IKQLNVQ 1103
Query: 166 GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRD-EQISELVKENLAAVGLKGVEDR 222
LR +G+V Q LFD ++ EN+ + +NS++ E+I KE + D
Sbjct: 1104 WLRAQLGIVSQEPILFDC-SIAENIAY--GDNSRVVSYEEIVRAAKE----ANIHQFIDS 1156
Query: 223 LP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
LP ++LSGG K+R+A+AR+++ +P +LL DE T+ LD + V
Sbjct: 1157 LPDKYNTRVGDKGTQLSGGQKQRIAIARALV-------RQPHILLLDEATSALDTESEKV 1209
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
V++ + K G + +V+ H+ STI+ A D ++ + GK+ G TH+
Sbjct: 1210 VQEAL----DKAREG-------RTCIVIAHRLSTIQNA-DLIVVIQNGKVKEHG-THQ 1254
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 36/237 (15%)
Query: 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157
Y S E IL+G++ K++ G+ V ++G SG GKST ++++ L P G V I G+
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD--- 453
Query: 158 LISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA--- 212
I + LR IG+V Q LF + T+ EN+ Y + ++I + VKE A
Sbjct: 454 -IRTINVRYLREIIGVVSQEPVLFAT-TIAENI---RYGREDVTMDEIEKAVKEANAYDF 508
Query: 213 AVGLKGVEDRLPSE----LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+ L D L E LSGG K+R+A+AR+++ + P++LL DE T+ LD
Sbjct: 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN-------PKILLLDEATSALD--- 558
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
T E ++++ K G + +V+ H+ ST+R A D + G IV QG
Sbjct: 559 -TESEAVVQAALDKAREG-------RTTIVIAHRLSTVRNA-DVIAGFDGGVIVEQG 606
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 124/238 (52%), Gaps = 45/238 (18%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+G+S +++ G+ + ++G SG GKST+++++ P G V++ G++ I +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE----IKQLNVQ 1103
Query: 166 GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRD-EQISELVKENLAAVGLKGVEDR 222
LR +G+V Q LFD ++ EN+ + +NS++ E+I KE + D
Sbjct: 1104 WLRAQLGIVSQEPILFDC-SIAENIAY--GDNSRVVSYEEIVRAAKE----ANIHQFIDS 1156
Query: 223 LP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
LP ++LSGG K+R+A+AR+++ +P +LL DE T+ LD + V
Sbjct: 1157 LPDKYNTRVGDKGTQLSGGQKQRIAIARALV-------RQPHILLLDEATSALDTESEKV 1209
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
V++ + K G + +V+ H+ STI+ A D ++ + GK+ G TH+
Sbjct: 1210 VQEAL----DKAREG-------RTCIVIAHRLSTIQNA-DLIVVIQNGKVKEHG-THQ 1254
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 36/237 (15%)
Query: 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157
Y S E IL+G++ K++ G+ V ++G SG GKST ++++ L P G V I G+
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD--- 453
Query: 158 LISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA--- 212
I + LR IG+V Q LF + T+ EN+ Y + ++I + VKE A
Sbjct: 454 -IRTINVRYLREIIGVVSQEPVLFAT-TIAENI---RYGREDVTMDEIEKAVKEANAYDF 508
Query: 213 AVGLKGVEDRLPSE----LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+ L D L E LSGG K+R+A+AR+++ + P++LL DE T+ LD
Sbjct: 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN-------PKILLLDEATSALD--- 558
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
T E ++++ K G + +V+ H+ ST+R A D + G IV QG
Sbjct: 559 -TESEAVVQAALDKAREG-------RTTIVIAHRLSTVRNA-DVIAGFDGGVIVEQG 606
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 127/243 (52%), Gaps = 31/243 (12%)
Query: 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
+ R Y E IL+G+SF + G+ + ++GPSG GKST++ ++ GE++I G
Sbjct: 1081 NVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDG 1140
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK---- 208
+ L + E + +I +V Q LFD ++ EN+ + L + S + Q+ E +
Sbjct: 1141 SEIKTL--NPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL-DPSSVTMAQVEEAARLANI 1196
Query: 209 ENLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
N A +G E R+ ++LSGG K+R+A+AR+++ + P++LL DE T+ LD
Sbjct: 1197 HNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRN-------PKILLLDEATSALD 1249
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ VV++ + ++G + +V+ H+ +T+ A D + + G I+ +G
Sbjct: 1250 TESEKVVQEALDRA-REGR----------TCIVIAHRLNTVMNA-DCIAVVSNGTIIEKG 1297
Query: 326 MTH 328
TH
Sbjct: 1298 -TH 1299
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 120/247 (48%), Gaps = 35/247 (14%)
Query: 88 GDVLI-DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
GD+ + + Y S + ILRG++ ++ G+ V ++G SG GKSTI+ ++ KG
Sbjct: 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
++ I G + D + LR + +V Q ALF+ T+ EN+ L + R+E ++
Sbjct: 474 KITIDGVD----VRDINLEFLRKNVAVVSQEPALFNC-TIEENIS--LGKEGITREEMVA 526
Query: 205 ELVKENLAAV------GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
N G + ++LSGG K+R+A+AR+++ + P++LL D
Sbjct: 527 ACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN-------PKILLLD 579
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
E T+ LD + +V+ + K + +++ H+ STIR A D +I
Sbjct: 580 EATSALDAESEGIVQQALDKAAKG-----------RTTIIIAHRLSTIRNA-DLIISCKN 627
Query: 319 GKIVWQG 325
G++V G
Sbjct: 628 GQVVEVG 634
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 30/244 (12%)
Query: 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
D Y + + +L+G++F +R GE ++GP+G+GKST+ ++ L P G++ + G
Sbjct: 19 DVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDG 78
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
+ + ++ V Q +F +++EN+ + L + M E+I+ ++ A
Sbjct: 79 KPLPQY--EHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTM--EEITAAAVKSGA 133
Query: 213 AVGLKGVE-------DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ G+ D S+LSGG ++ VALAR++I +P VL+ D+ T+ LD
Sbjct: 134 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR-------KPCVLILDDATSALD 186
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ VE L+ +P + V++ QH ++ D ++FL EG + +G
Sbjct: 187 ANSQLQVEQLLYE----------SPERYSRSVLLITQHLSLVEQADHILFL-EGGAIREG 235
Query: 326 MTHE 329
TH+
Sbjct: 236 GTHQ 239
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 126/241 (52%), Gaps = 26/241 (10%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ +V + ++L+ V+ + G+ ++G +G+GK+T+LKI+AGLLA GE+++
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA-AGEIFLD 70
Query: 152 GRKRAGLISDEEISGLRIGLVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G +D + +G VFQ+ ++ TV E+V F L E + + ++ + +K+
Sbjct: 71 GSP-----ADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSL-EIMGLDESEMRKRIKKV 124
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
L VGL G+ P LSGG K+R+A+A S++ +T+ L DEP + LDP +
Sbjct: 125 LELVGLSGLAAADPLNLSGGQKQRLAIA-SMLARDTR------FLALDEPVSMLDPPSQR 177
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+ ++ S+ +G+ ++VTH+ + +D ++ + G I + G EF
Sbjct: 178 EIFQVLESLKNEGK----------GIILVTHELEYL-DDMDFILHISNGTIDFCGSWEEF 226
Query: 331 T 331
Sbjct: 227 V 227
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 33/225 (14%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
D++++ ++++ +G H ++G+ K+ G+ V +IG +G GK+T L IAGL+ KG++
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 149 YIRGR----KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY-----ENSKMR 199
G+ K A +I+ I+ LV + +F LTV EN+ Y E K
Sbjct: 64 IFNGQDITNKPAHVINRXGIA-----LVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRD 118
Query: 200 DEQISEL---VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256
E I L +KE L +G LSGG ++ +A+ R++ P++L
Sbjct: 119 LEWIFSLFPRLKERLKQLG---------GTLSGGEQQXLAIGRAL-------XSRPKLLX 162
Query: 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
DEP+ GL PI + V ++I+ ++++G L N + V H
Sbjct: 163 XDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 141/306 (46%), Gaps = 53/306 (17%)
Query: 32 KPINSFYYKAKEEQRKVV-CACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDV 90
+P+ + E QR + C + DL T+ + N ++E VN G+V
Sbjct: 296 RPLKALTSVTSEFQRGMAACQTLFGLMDLETE-----RDNGKYEAERVN--------GEV 342
Query: 91 LIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
D ++V ++ EK L VSF I G+ V ++G SG+GKSTI + D G +
Sbjct: 343 --DVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+ G + D +++ LR LV Q+ LF+ T+ N+ + + EQI +
Sbjct: 401 CLDGHD----VRDYKLTNLRRHFALVSQNVHLFND-TIANNIAY--AAEGEYTREQIEQA 453
Query: 207 VKENLAA-------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
++ A GL V + LSGG ++RVA+AR+++ D VL+ DE
Sbjct: 454 ARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD-------APVLILDE 506
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
T+ LD + ++ + + K + +V+ H+ STI +A D ++ + EG
Sbjct: 507 ATSALDTESERAIQAALDELQKN-----------KTVLVIAHRLSTIEQA-DEILVVDEG 554
Query: 320 KIVWQG 325
+I+ +G
Sbjct: 555 EIIERG 560
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 115/246 (46%), Gaps = 21/246 (8%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L++ +++ ++ ++ VS I GE V IIGP+G GKST+L+++ G L+P GE ++
Sbjct: 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70
Query: 151 RGRKRAGLISDEEISGLRIGLVF-QSAALFDSLTVRE--NVGFLLYENSKMRDEQISELV 207
G+ L S + + R V Q + L +V E +G Y S+ D Q + V
Sbjct: 71 LGQN---LNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ--DRQALQQV 125
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
+ L + R+ LSGG ++RV LAR ++ + P L DEPT+ LD
Sbjct: 126 MAQTDCLALAQRDYRV---LSGGEQQRVQLAR-VLAQLWQPQPTPRWLFLDEPTSALDLY 181
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
L+R + ++ P + V H + DR++ L +GK+V G
Sbjct: 182 HQQHTLRLLRQLTRQ------EPLAVC---CVLHDLNLAALYADRIMLLAQGKLVACGTP 232
Query: 328 HEFTSS 333
E ++
Sbjct: 233 EEVLNA 238
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 30/243 (12%)
Query: 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
D Y + +L+G++F + G+ ++GP+G+GKST+ ++ L P G+V + G
Sbjct: 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
+ D ++ V Q LF + REN+ + L M E+I+ + E+ A
Sbjct: 81 EPL--VQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTM--EEITAVAMESGA 135
Query: 213 AVGLKGVEDRLPSE-------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ G +E LSGG ++ VALAR++I +P +L+ D+ T+ LD
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI-------RKPRLLILDQATSALD 188
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
V+ L+ + + +++THQ S RA ++FL EG + QG
Sbjct: 189 AGNQLRVQRLLYESPEWASR---------TVLLITHQLSLAERA-HHILFLKEGSVCEQG 238
Query: 326 MTH 328
TH
Sbjct: 239 -TH 240
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 128/252 (50%), Gaps = 40/252 (15%)
Query: 88 GDVLIDCRNVYKSFGEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145
GDV + RNV ++ + + LR ++ KI G+ V ++G SG+GKSTI +I D+
Sbjct: 340 GDV--EFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 146 GEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
GE+ + G + + ++ LR + LV Q+ LF+ TV N+ + E + EQI
Sbjct: 398 GEILMDGHD----LREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTE--QYSREQI 450
Query: 204 SELVKENLAAVGLKGVEDRLPSE-------LSGGMKKRVALARSIIFDNTKESVEPEVLL 256
E + A + +++ L + LSGG ++R+A+AR+++ D+ +L+
Sbjct: 451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS-------PILI 503
Query: 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316
DE T+ LD + ++ + + K + +V+ H+ STI +A D ++ +
Sbjct: 504 LDEATSALDTESERAIQAALDELQKN-----------RTSLVIAHRLSTIEKA-DEIVVV 551
Query: 317 YEGKIVWQGMTH 328
+G IV +G TH
Sbjct: 552 EDGVIVERG-TH 562
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 131/264 (49%), Gaps = 45/264 (17%)
Query: 83 EPEDDGDVLID-------CRNVYKSFGEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTI 133
+ +D+G +ID RNV ++ + + LR ++ KI G+ V ++G SG+GKSTI
Sbjct: 326 QEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTI 385
Query: 134 LKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFL 191
+I D+G + + G + + ++ LR + LV Q+ LF+ TV N+ +
Sbjct: 386 ASLITRFYDIDEGHILMDGHD----LREYTLASLRNQVALVSQNVHLFND-TVANNIAYA 440
Query: 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPS-------ELSGGMKKRVALARSIIFD 244
E + EQI E + A + +++ L + LSGG ++R+A+AR+++ D
Sbjct: 441 RTE--EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 498
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
+ +L+ DE T+ LD + ++ + + K + +V+ H+ S
Sbjct: 499 S-------PILILDEATSALDTESERAIQAALDELQKNRTS-----------LVIAHRLS 540
Query: 305 TIRRAVDRLIFLYEGKIVWQGMTH 328
TI +A D ++ + +G IV +G TH
Sbjct: 541 TIEQA-DEIVVVEDGIIVERG-TH 562
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 121/260 (46%), Gaps = 48/260 (18%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
G + ID + + E IL+ ++ I GE V +G SG GKST++ +I G+
Sbjct: 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ I G I D LR IGLV Q LF S TV+EN+ L DE++ E
Sbjct: 398 ILIDGHN----IKDFLTGSLRNQIGLVQQDNILF-SDTVKENI---LLGRPTATDEEVVE 449
Query: 206 LVK--------ENL-----AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252
K NL VG +GV +LSGG K+R+++AR IF N P
Sbjct: 450 AAKMANAHDFIMNLPQGYDTEVGERGV------KLSGGQKQRLSIAR--IFLN-----NP 496
Query: 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
+L+ DE T+ LD + +++++ + + K + ++V H+ STI A D+
Sbjct: 497 PILILDEATSALDLESESIIQEALDVLSKD-----------RTTLIVAHRLSTITHA-DK 544
Query: 313 LIFLYEGKIVWQGMTHEFTS 332
++ + G IV G E +
Sbjct: 545 IVVIENGHIVETGTHRELIA 564
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 122/268 (45%), Gaps = 48/268 (17%)
Query: 92 IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
++ +NV Y + E I + S I G ++GPSG+GKST+L ++ L P G +
Sbjct: 373 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+ G I LR IG V Q LF S ++ EN+ + + S + E+I +
Sbjct: 433 SLDGHD----IRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRV 487
Query: 207 VK-ENLAA------------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
+ N A VG KGV LSGG K+R+A+AR+++ + P+
Sbjct: 488 AEVANAVAFIRNFPQGFNTVVGEKGV------LLSGGQKQRIAIARALLKN-------PK 534
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+LL DE T+ LD +V++ + + + +V+ H STI+ A + +
Sbjct: 535 ILLLDEATSALDAENEYLVQEALDRLMDG-----------RTVLVIAHHLSTIKNA-NMV 582
Query: 314 IFLYEGKIVWQGMTHEFTSSSNPIVQQF 341
L +GKI G E S N I ++
Sbjct: 583 AVLDQGKITEYGKHEELLSKPNGIYRKL 610
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 30/243 (12%)
Query: 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
D Y + +L+G++F + G+ ++GP+G+GKST+ ++ L P G+V + G
Sbjct: 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
+ D ++ V Q LF + REN+ + L M E+I+ + E+ A
Sbjct: 81 EPL--VQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTM--EEITAVAMESGA 135
Query: 213 AVGLKGVEDRLPSE-------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ G +E LSGG ++ VALAR++I +P +L+ D T+ LD
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI-------RKPRLLILDNATSALD 188
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
V+ L+ + + +++T Q S RA ++FL EG + QG
Sbjct: 189 AGNQLRVQRLLYESPEWASR---------TVLLITQQLSLAERA-HHILFLKEGSVCEQG 238
Query: 326 MTH 328
TH
Sbjct: 239 -TH 240
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 44/251 (17%)
Query: 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ NV+ S+ + + L+ VSF + G+ + ++GPSG GKSTIL+++ G + I
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENV--GFLLYENSKMRDEQISEL 206
G+ IS + LR IG+V Q LF+ T+ +N+ G + N ++ +
Sbjct: 114 DGQD----ISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAG 168
Query: 207 VKENLAA--------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+ + + A VG +G+ +LSGG K+RVA+AR+I+ P ++L D
Sbjct: 169 IHDAIMAFPEGYRTQVGERGL------KLSGGEKQRVAIARTIL-------KAPGIILLD 215
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
E T+ LD S + + LA + +VV H+ ST+ A D+++ + +
Sbjct: 216 EATSALDT-----------SNERAIQASLAKVCANRTTIVVAHRLSTVVNA-DQILVIKD 263
Query: 319 GKIVWQGMTHE 329
G IV +G HE
Sbjct: 264 GCIVERG-RHE 273
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 123/268 (45%), Gaps = 48/268 (17%)
Query: 92 IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
++ +NV Y + E I + S I G ++GPSG+GKST+L ++ L P G +
Sbjct: 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+ G I LR IG V Q LF S ++ EN+ + + S + E+I +
Sbjct: 402 SLDGHD----IRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRV 456
Query: 207 VK-ENLAA------------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
+ N A VG KGV LSGG K+R+A+AR+++ + P+
Sbjct: 457 AEVANAVAFIRNFPQGFNTVVGEKGV------LLSGGQKQRIAIARALLKN-------PK 503
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+LL DE T+ LD +V++ + + + +V+ H+ STI+ A + +
Sbjct: 504 ILLLDEATSALDAENEYLVQEALDRLMDG-----------RTVLVIAHRLSTIKNA-NMV 551
Query: 314 IFLYEGKIVWQGMTHEFTSSSNPIVQQF 341
L +GKI G E S N I ++
Sbjct: 552 AVLDQGKITEYGKHEELLSKPNGIYRKL 579
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 130/283 (45%), Gaps = 44/283 (15%)
Query: 79 NTLFEPEDDGDVLIDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKI 136
N L P +G V NV + E +L GV+F ++ G V ++G +G+GKST++ +
Sbjct: 331 NALALPNVEGSV--SFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNL 388
Query: 137 IAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYE 194
I L+ P++G V + + ++ LR I V Q LF T++EN L +
Sbjct: 389 IPRLIDPERGRVEVDELD----VRTVKLKDLRGHISAVPQETVLFSG-TIKEN---LKWG 440
Query: 195 NSKMRDEQISELVK----ENLAAVGLKGVEDRLP---SELSGGMKKRVALARSIIFDNTK 247
D++I E K + +G + R+ SGG K+R+++AR+++
Sbjct: 441 REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV----- 495
Query: 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307
+P+VL+ D+ T+ +DPI K+ +GL + ++T + T
Sbjct: 496 --KKPKVLILDDCTSSVDPIT-----------EKRILDGLKRYTKGCTTFIITQKIPTAL 542
Query: 308 RAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQ----QFASGSL 346
A D+++ L+EGK+ G E P + QF +G +
Sbjct: 543 LA-DKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFGNGVM 584
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 50/238 (21%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L+ ++F I G ++G +G+GKSTI K++ + G++ I G+ ++ +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKN----VNKYNRNS 90
Query: 167 LR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ-------------ISELVKENL 211
+R IG+V Q LF+ T++ N+ LY DE+ I L K+
Sbjct: 91 IRSIIGIVPQDTILFNE-TIKYNI---LYGKLDATDEEVIKATKSAQLYDFIEALPKKWD 146
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
VG KG+ +LSGG ++R+A+AR ++ D P+++++DE T+ LD +
Sbjct: 147 TIVGNKGM------KLSGGERQRIAIARCLLKD-------PKIVIFDEATSSLDSKTEYL 193
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ + + K + +++ H+ STI A + +I L +GKIV +G TH+
Sbjct: 194 FQKAVEDLRKN-----------RTLIIIAHRLSTISSA-ESIILLNKGKIVEKG-THK 238
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 30/243 (12%)
Query: 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
D Y + +L+G++F + G+ ++GP+G+GKST+ ++ L P G+V + G
Sbjct: 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
D ++ V Q LF + REN+ + L M E+I+ + E+ A
Sbjct: 81 EPLVQY--DHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTM--EEITAVAMESGA 135
Query: 213 AVGLKGVEDRLPSE-------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ G +E L+ G ++ VALAR++I +P +L+ D T+ LD
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALI-------RKPRLLILDNATSALD 188
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
V+ L+ + + +++T Q S RA ++FL EG + QG
Sbjct: 189 AGNQLRVQRLLYESPEWASR---------TVLLITQQLSLAERA-HHILFLKEGSVCEQG 238
Query: 326 MTH 328
TH
Sbjct: 239 -TH 240
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 30/182 (16%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
G IL +SF I G+ VG++G +G+GKST+L LL + GE+ I G + +
Sbjct: 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLE 90
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
+ G++ Q +F S T R+N L N+ D++I ++ E VGL+ V +
Sbjct: 91 QWRKAF--GVIPQKVFIF-SGTFRKN----LDPNAAHSDQEIWKVADE----VGLRSVIE 139
Query: 222 RLPSE-----------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
+ P + LS G K+ + LARS++ + ++LL DEP+A LDP+
Sbjct: 140 QFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL-------SKAKILLLDEPSAHLDPVTYQ 192
Query: 271 VV 272
++
Sbjct: 193 II 194
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 37/208 (17%)
Query: 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172
+IR GE +GI+GP+G GK+T +K++AG+ P +G+V + I G V
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAYKPQYIKAEYEGTV 434
Query: 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMK 232
++ + DS + N Y+ +EL+K +G+ + DR +LSGG
Sbjct: 435 YELLSKIDSSKLNSN----FYK---------TELLK----PLGIIDLYDRNVEDLSGGEL 477
Query: 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292
+RVA+A +++ D ++ L DEP+A LD V IR + +K E
Sbjct: 478 QRVAIAATLLRD-------ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK------- 523
Query: 293 IASYVVVTHQHSTIRRAVDRLIFLYEGK 320
+ +VV H I DRLI ++EG+
Sbjct: 524 --TALVVEHDVLMIDYVSDRLI-VFEGE 548
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 37/197 (18%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173
++ G VGI+GP+GTGK+T +KI+AG L P+ + ++ S + F
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN--------------LCEDNDSWDNVIRAF 159
Query: 174 QSAAL---FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG------------ 218
+ L F+ L E + + + + + V+E L V G
Sbjct: 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE 219
Query: 219 -VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
V DR +LSGG +RVA+A +++ + +DEP++ LD V +IR
Sbjct: 220 NVLDRELHQLSGGELQRVAIAAALL-------RKAHFYFFDEPSSYLDIRQRLKVARVIR 272
Query: 278 SVHKKGENGLANPGNIA 294
+ +G+ L ++A
Sbjct: 273 RLANEGKAVLVVEHDLA 289
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 37/208 (17%)
Query: 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172
+IR GE +GI+GP+G GK+T +K++AG+ P +G+V + I G V
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAYKPQYIKAEYEGTV 420
Query: 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMK 232
++ + DS + N Y+ +EL+K +G+ + DR +LSGG
Sbjct: 421 YELLSKIDSSKLNSN----FYK---------TELLK----PLGIIDLYDRNVEDLSGGEL 463
Query: 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292
+RVA+A +++ D ++ L DEP+A LD V IR + +K E
Sbjct: 464 QRVAIAATLLRD-------ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK------- 509
Query: 293 IASYVVVTHQHSTIRRAVDRLIFLYEGK 320
+ +VV H I DRLI ++EG+
Sbjct: 510 --TALVVEHDVLMIDYVSDRLI-VFEGE 534
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 37/197 (18%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173
++ G VGI+GP+GTGK+T +KI+AG L P+ + ++ S + F
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN--------------LCEDNDSWDNVIRAF 145
Query: 174 QSAAL---FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG------------ 218
+ L F+ L E + + + + + V+E L V G
Sbjct: 146 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE 205
Query: 219 -VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
V DR +LSGG +RVA+A +++ + +DEP++ LD V +IR
Sbjct: 206 NVLDRELHQLSGGELQRVAIAAALLR-------KAHFYFFDEPSSYLDIRQRLKVARVIR 258
Query: 278 SVHKKGENGLANPGNIA 294
+ +G+ L ++A
Sbjct: 259 RLANEGKAVLVVEHDLA 275
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 31/241 (12%)
Query: 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAGLISDEEI 164
G+S I I+G S +GKSTI++ + L P+ G V +G+ + +EE+
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTM-REEEL 84
Query: 165 SGLR---IGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGL-- 216
+R I LV Q+A +L ++ V E+ + + + ++ E E L V L
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNP 144
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
+ V + P +LSGGMK+RV +A +++ D P VL+ DEPT+ L D++
Sbjct: 145 EAVLNSYPLQLSGGMKQRVLIALALLLD-------PVVLILDEPTSAL---------DVL 188
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNP 336
H + + VTH + D++ +Y G +V T F NP
Sbjct: 189 TQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNST--FQIFKNP 246
Query: 337 I 337
+
Sbjct: 247 L 247
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 39/254 (15%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDK 145
G ++ ++++ S +K ILRG+S + GE I+GP+G+GKST+ +AG
Sbjct: 17 GSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG 76
Query: 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL--------YENSK 197
G V +G+ L S E+ +G I + FQ ++ N FL Y +
Sbjct: 77 GTVEFKGKDLLAL-SPEDRAGEGIFMAFQYPVEIPGVS---NQFFLQTALNAVRSYRGQE 132
Query: 198 MRDE-QISELVKENLAAVGLKGVEDRLPSEL----SGGMKKRVALARSIIFDNTKESVEP 252
D +L++E +A LK ED L + SGG KKR + + + +EP
Sbjct: 133 TLDRFDFQDLMEEKIAL--LKMPEDLLTRSVNVGFSGGEKKRNDILQMAV-------LEP 183
Query: 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVD 311
E+ + DE +GLD A VV D + S+ + G+ S+++VTH + D
Sbjct: 184 ELCILDESDSGLDIDALKVVADGVNSL-RDGKR---------SFIIVTHYQRILDYIKPD 233
Query: 312 RLIFLYEGKIVWQG 325
+ LY+G+IV G
Sbjct: 234 YVHVLYQGRIVKSG 247
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEV 148
++ ++++ S +K ILRG+S + GE I+GP+G+GKST+ +AG G V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL--------YENSKMRD 200
+G+ L S E+ +G I + FQ ++ N FL Y + D
Sbjct: 61 EFKGKDLLAL-SPEDRAGEGIFMAFQYPVEIPGVS---NQFFLQTALNAVRSYRGQETLD 116
Query: 201 E-QISELVKENLAAVGLKGVEDRLPSEL----SGGMKKRVALARSIIFDNTKESVEPEVL 255
+L++E +A LK ED L + SGG KKR + + + +EPE+
Sbjct: 117 RFDFQDLMEEKIAL--LKMPEDLLTRSVNVGFSGGEKKRNDILQMAV-------LEPELC 167
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVDRLI 314
+ DE +GLD A VV D + S+ + G+ S+++VTH + D +
Sbjct: 168 ILDESDSGLDIDALKVVADGVNSL-RDGKR---------SFIIVTHYQRILDYIKPDYVH 217
Query: 315 FLYEGKIVWQG 325
LY+G+IV G
Sbjct: 218 VLYQGRIVKSG 228
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 112/234 (47%), Gaps = 50/234 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ ++FKI G+ + + G +G GK+++L +I G L P +G++ K +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-----KHSG-------- 99
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR--------DEQISELVKENLAAVGLK 217
RI Q++ + T++EN+ + Y+ + R +E IS+ +++ +G
Sbjct: 100 --RISFCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST-VVEDLI 276
G+ LSGG + R++LAR++ D ++ L D P LD + + E +
Sbjct: 157 GI------TLSGGQRARISLARAVYKD-------ADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+ +AN + ++VT + +++A D+++ L+EG + G E
Sbjct: 204 CKL-------MANK----TRILVTSKMEHLKKA-DKILILHEGSSYFYGTFSEL 245
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 112/234 (47%), Gaps = 50/234 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ ++FKI G+ + + G +G GK+++L +I G L P +G++ K +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-----KHSG-------- 99
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR--------DEQISELVKENLAAVGLK 217
RI Q++ + T++EN+ + Y+ + R +E IS+ +++ +G
Sbjct: 100 --RISFCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST-VVEDLI 276
G+ LSGG + R++LAR++ D ++ L D P LD + + E +
Sbjct: 157 GI------TLSGGQRARISLARAVYKD-------ADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+ +AN + ++VT + +++A D+++ L+EG + G E
Sbjct: 204 CKL-------MANK----TRILVTSKMEHLKKA-DKILILHEGSSYFYGTFSEL 245
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 43/211 (20%)
Query: 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV---YIRGRKRAGLISDEEISGLRI 169
+I+ GE +GI+GP+G GK+T +K +AG+ P +G++ K + +D E
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYE------ 361
Query: 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229
G V++ + D+ + N Y+ +EL+K +G+ + DR +ELSG
Sbjct: 362 GTVYELLSKIDASKLNSN----FYK---------TELLK----PLGIIDLYDREVNELSG 404
Query: 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN 289
G +RVA+A +++ D ++ L DEP+A LD V IR + +K E
Sbjct: 405 GELQRVAIAATLLRD-------ADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEK---- 453
Query: 290 PGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
+ +VV H I DRL ++EG+
Sbjct: 454 -----TALVVEHDVLXIDYVSDRLX-VFEGE 478
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 27/192 (14%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAP------DKGEVYI---RGRKRAGLISDEEI 164
++ G VGI+GP+GTGKST +KI+AG L P D + I RG + +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE--QISELVKENLAAVGLKGVEDR 222
+R + Q L V+ V LL K DE ++ E+VK A+ L+ V +R
Sbjct: 104 GEIRPVVKPQYVDLIPK-AVKGKVIELL----KKADETGKLEEVVK----ALELENVLER 154
Query: 223 LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282
LSGG +RVA+A +++ + T +DEP++ LD IR + ++
Sbjct: 155 EIQHLSGGELQRVAIAAALLRNAT-------FYFFDEPSSYLDIRQRLNAARAIRRLSEE 207
Query: 283 GENGLANPGNIA 294
G++ L ++A
Sbjct: 208 GKSVLVVEHDLA 219
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 117/251 (46%), Gaps = 50/251 (19%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+V+++ + G +L+ ++FKI G+ + + G +G GK+++L +I G L P +G++
Sbjct: 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR--------D 200
K +G RI Q + + T++EN+ + Y+ + R +
Sbjct: 66 -----KHSG----------RISFCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLE 109
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
E IS+ +++ +G G+ LSGG + R++LAR++ D ++ L D P
Sbjct: 110 EDISKFAEKDNIVLGEGGI------TLSGGQRARISLARAVYKD-------ADLYLLDSP 156
Query: 261 TAGLDPIAST-VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
LD + + E + + +AN I +VT + +++A D+++ L+EG
Sbjct: 157 FGYLDVLTEKEIFESCVCKL-------MANKTRI----LVTSKMEHLKKA-DKILILHEG 204
Query: 320 KIVWQGMTHEF 330
+ G E
Sbjct: 205 SSYFYGTFSEL 215
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 51/252 (20%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+V+++ + G +L+ ++FKI G+ + + G +G GK+++L +I G L P +G++
Sbjct: 18 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 77
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR-------- 199
K +G RI Q + + T++EN+ F + Y+ + R
Sbjct: 78 -----KHSG----------RISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQL 121
Query: 200 DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+E IS+ +++ +G G+ LSGG + R++LAR++ D ++ L D
Sbjct: 122 EEDISKFAEKDNIVLGEGGI------TLSGGQRARISLARAVYKD-------ADLYLLDS 168
Query: 260 PTAGLDPIAST-VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
P LD + + E + + +AN I +VT + +++A D+++ L+E
Sbjct: 169 PFGYLDVLTEKEIFESCVCKL-------MANKTRI----LVTSKMEHLKKA-DKILILHE 216
Query: 319 GKIVWQGMTHEF 330
G + G E
Sbjct: 217 GSSYFYGTFSEL 228
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 51/252 (20%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+V+++ + G +L+ ++FKI G+ + + G +G GK+++L +I G L P +G++
Sbjct: 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR-------- 199
K +G RI Q + + T++EN+ F + Y+ + R
Sbjct: 66 -----KHSG----------RISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQL 109
Query: 200 DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+E IS+ +++ +G G+ LSGG + R++LAR++ D ++ L D
Sbjct: 110 EEDISKFAEKDNIVLGEGGI------TLSGGQRARISLARAVYKD-------ADLYLLDS 156
Query: 260 PTAGLDPIAST-VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
P LD + + E + + +AN I +VT + +++A D+++ L+E
Sbjct: 157 PFGYLDVLTEKEIFESCVCKL-------MANKTRI----LVTSKMEHLKKA-DKILILHE 204
Query: 319 GKIVWQGMTHEF 330
G + G E
Sbjct: 205 GSSYFYGTFSEL 216
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 19/226 (8%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169
+S ++R GE + ++GP+G GKST+L +AG+ + KG + G+ E S ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPL------EAWSATKL 71
Query: 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229
L A L T Y D+ +EL+ + A+ L R ++LSG
Sbjct: 72 AL--HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSG 129
Query: 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN 289
G +RV LA ++ + + ++LL D+P LD + ++ ++ ++ ++G
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQG------ 183
Query: 290 PGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 335
+ V+ +H + R R L GK++ G E + N
Sbjct: 184 ----LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 51/235 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ ++FKI G+ + + G +G GK+++L +I G L P +G++ K +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-----KHSG-------- 99
Query: 166 GLRIGLVFQSAALFDSLTVREN-VGFLLYENSKMR--------DEQISELVKENLAAVGL 216
RI Q + + T++EN + + Y+ + R +E IS+ +++ +G
Sbjct: 100 --RISFCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST-VVEDL 275
G+ LSGG + R++LAR++ D ++ L D P LD + + E
Sbjct: 157 GGI------TLSGGQRARISLARAVYKD-------ADLYLLDSPFGYLDVLTEKEIFESC 203
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+ + +AN + ++VT + +++A D+++ L+EG + G E
Sbjct: 204 VCKL-------MANK----TRILVTSKMEHLKKA-DKILILHEGSSYFYGTFSEL 246
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 19/226 (8%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169
+S ++R GE + ++GP+G GKST+L +AG+ + KG + G+ E S ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPL------EAWSATKL 71
Query: 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229
L A L T Y D+ +EL+ + A+ L R ++LSG
Sbjct: 72 AL--HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSG 129
Query: 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN 289
G +RV LA ++ + + ++LL D+P LD + ++ ++ ++ ++G
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQG------ 183
Query: 290 PGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 335
+ V+ +H + R R L GK++ G E + N
Sbjct: 184 ----LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 110/234 (47%), Gaps = 50/234 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ ++FKI G+ + + G +G GK+++L +I G L P +G++ K +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-----KHSG-------- 99
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR--------DEQISELVKENLAAVGLK 217
RI Q + + T++EN+ + Y+ + R +E IS+ +++ +G
Sbjct: 100 --RISFCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST-VVEDLI 276
G+ LS G + +++LAR++ D ++ L D P LD + + E +
Sbjct: 157 GI------TLSEGQQAKISLARAVYKD-------ADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+ +AN + ++VT + +++A D+++ L+EG + G E
Sbjct: 204 CKL-------MANK----TRILVTSKMEHLKKA-DKILILHEGSSYFYGTFSEL 245
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 107/261 (40%), Gaps = 42/261 (16%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
LI + + K IL+ +S++I G+ + G +G GK+T+L I+ G V +
Sbjct: 21 LIQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 151 RGRKRAGLISDEEISGLRIGLVFQS----------------AALFDSLTVRENVGFLLYE 194
G+ + E IG V S + F S+ V +++
Sbjct: 81 FGKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDI------ 134
Query: 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
D++I + L VG + LS G K+RV +AR++ +P+V
Sbjct: 135 -----DDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARAL-------XGQPQV 182
Query: 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314
L+ DEP AGLD IA R + L++ + + VTH I +++
Sbjct: 183 LILDEPAAGLDFIA--------RESLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKIL 234
Query: 315 FLYEGKIVWQGMTHEFTSSSN 335
L +G+ + QG + +S N
Sbjct: 235 LLKDGQSIQQGAVEDILTSEN 255
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 111/235 (47%), Gaps = 51/235 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ ++FKI G+ + + G +G GK+++L +I G L P +G++ K +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-----KHSG-------- 99
Query: 166 GLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR--------DEQISELVKENLAAVGL 216
RI Q + + T++EN+ F + Y+ + R +E IS+ +++ +G
Sbjct: 100 --RISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST-VVEDL 275
G+ LS G + +++LAR++ D ++ L D P LD + + E
Sbjct: 157 GGI------TLSEGQQAKISLARAVYKD-------ADLYLLDSPFGYLDVLTEKEIFESC 203
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+ + +AN + ++VT + +++A D+++ L+EG + G E
Sbjct: 204 VCKL-------MANK----TRILVTSKMEHLKKA-DKILILHEGSSYFYGTFSEL 246
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG--LLAPDKGEVY 149
++ R+++ S + IL+GV+ + GE ++GP+G GKST+ KI+AG ++GE+
Sbjct: 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL 63
Query: 150 IRGRKRAGLISDEEI-SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
+ G L DE GL L FQ +T+ N L + R+ ++E
Sbjct: 64 LDGENILELSPDERARKGLF--LAFQYPVEVPGVTI-ANFLRLALQAKLGREVGVAEFWT 120
Query: 209 ENLAAVGLKGVEDRLPSE-----LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ A+ L ++ S SGG KKR + + ++ EP + DE +G
Sbjct: 121 KVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL-------EPTYAVLDETDSG 173
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323
LD A VV +G N + P N + V+ +Q D++ + +G++V
Sbjct: 174 LDIDALKVV--------ARGVNAMRGP-NFGALVITHYQRILNYIQPDKVHVMMDGRVVA 224
Query: 324 QG 325
G
Sbjct: 225 TG 226
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 19/226 (8%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169
+S ++R GE + ++GP+G GKST+L AG + KG + G+ E S ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPL------EAWSATKL 71
Query: 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229
L A L T Y D+ +EL+ + A+ L R ++LSG
Sbjct: 72 AL--HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSG 129
Query: 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN 289
G +RV LA ++ + + ++LL DEP LD + ++ ++ ++ ++G
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQG------ 183
Query: 290 PGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 335
+ V +H + R R L GK + G E + N
Sbjct: 184 ----LAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 19/226 (8%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169
+S ++R GE + ++GP+G GKST+L AG + KG + G+ E S ++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPL------EAWSATKL 71
Query: 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229
L A L T Y D+ +EL+ + A+ L R ++LSG
Sbjct: 72 AL--HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSG 129
Query: 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN 289
G +RV LA ++ + + ++LL DEP LD + ++ ++ ++ ++G
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQG------ 183
Query: 290 PGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 335
+ V +H + R R L GK + G E + N
Sbjct: 184 ----LAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 41/240 (17%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
E + + ++F + G+ + ++G +G GKST+L ++ G+ P +G++ +
Sbjct: 16 AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ--------- 66
Query: 162 EEISGLRIGLVFQ------SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
IG V Q + ++ D + + + + K D Q++ + L +
Sbjct: 67 ------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA---MQALDYLN 117
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
L + R + LSGG ++ + +AR+I + E +++L DEPT+ LD +V L
Sbjct: 118 LTHLAKREFTSLSGGQRQLILIARAI-------ASECKLILLDEPTSALDLANQDIVLSL 170
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 335
+ LA N+ + V THQ + + ++ + L + + G T +S N
Sbjct: 171 LID--------LAQSQNM-TVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILTSEN 220
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 106/236 (44%), Gaps = 50/236 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ ++ I GE + I G +G+GK+++L +I G L +G + K +G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII-----KHSG-------- 99
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR--------DEQISELVKENLAAVGLK 217
R+ Q + + T++EN+ + Y+ + + + I++ +++ +G
Sbjct: 100 --RVSFCSQFSWIMPG-TIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 156
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA-STVVEDLI 276
GV LSGG + R++LAR++ D ++ L D P LD V E +
Sbjct: 157 GVT------LSGGQRARISLARAVYKD-------ADLYLLDSPFGYLDVFTEEQVFESCV 203
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332
+ +AN I +VT + +R+A D+++ L++G + G E S
Sbjct: 204 CKL-------MANKTRI----LVTSKMEHLRKA-DKILILHQGSSYFYGTFSELQS 247
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 53/238 (22%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L G++F I G V ++G G GKS++L + + +G V I+G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS------------- 67
Query: 167 LRIGLVFQSAALFDSLTVRENVGF-----------LLYENSKMRDEQISELVKENLAAVG 215
+ V Q A + + ++REN+ F ++ + + D +I L + +G
Sbjct: 68 --VAYVPQQAWIQND-SLRENILFGCQLEEPYYRSVIQACALLPDLEI--LPSGDRTEIG 122
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTVVED 274
KGV LSGG K+RV+LAR+ ++ N ++ L+D+P + +D + + E+
Sbjct: 123 EKGVN------LSGGQKQRVSLARA-VYSNA------DIYLFDDPLSAVDAHVGKHIFEN 169
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332
+I G G+ + ++VTH S + + VD +I + GKI G E +
Sbjct: 170 VI------GPKGMLKN---KTRILVTHSMSYLPQ-VDVIIVMSGGKISEMGSYQELLA 217
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 107/237 (45%), Gaps = 51/237 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ ++ I GE + I G +G+GK+++L +I G L +G + K +G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII-----KHSG-------- 99
Query: 166 GLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR--------DEQISELVKENLAAVGL 216
R+ Q + + T++EN+ F + Y+ + + + I++ +++ +G
Sbjct: 100 --RVSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA-STVVEDL 275
GV LSGG + R++LAR++ D ++ L D P LD V E
Sbjct: 157 GGVT------LSGGQRARISLARAVYKD-------ADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332
+ + +AN I +VT + +R+A D+++ L++G + G E S
Sbjct: 204 VCKL-------MANKTRI----LVTSKMEHLRKA-DKILILHQGSSYFYGTFSELQS 248
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 107/237 (45%), Gaps = 51/237 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ ++ I GE + I G +G+GK+++L +I G L +G + K +G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII-----KHSG-------- 99
Query: 166 GLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR--------DEQISELVKENLAAVGL 216
R+ Q + + T++EN+ F + Y+ + + + I++ +++ +G
Sbjct: 100 --RVSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA-STVVEDL 275
GV LSGG + R++LAR++ D ++ L D P LD V E
Sbjct: 157 GGVT------LSGGQRARISLARAVYKD-------ADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332
+ + +AN I +VT + +R+A D+++ L++G + G E S
Sbjct: 204 VCKL-------MANKTRI----LVTSKMEHLRKA-DKILILHQGSSYFYGTFSELQS 248
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 106/237 (44%), Gaps = 51/237 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ ++ I GE + I G +G+GK+++L +I G L +G + K +G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII-----KHSG-------- 99
Query: 166 GLRIGLVFQSAALFDSLTVRENV-GFLLYENSKMR--------DEQISELVKENLAAVGL 216
R+ Q + + T++EN+ + Y+ + + + I++ +++ +G
Sbjct: 100 --RVSFCSQFSWIMPG-TIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA-STVVEDL 275
GV LSGG + R++LAR++ D ++ L D P LD V E
Sbjct: 157 GGVT------LSGGQRARISLARAVYKD-------ADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332
+ + +AN I +VT + +R+A D+++ L++G + G E S
Sbjct: 204 VCKL-------MANKTRI----LVTSKMEHLRKA-DKILILHQGSSYFYGTFSELQS 248
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 34/196 (17%)
Query: 105 HILRGVSFKI------RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV---------- 148
H SFK+ R G+ +G++G +G GKST LKI+AG P+ G
Sbjct: 85 HRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEII 144
Query: 149 -YIRGRKRAG----LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
Y RG + ++ D+ + ++ V + VG LL K+R E+
Sbjct: 145 KYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPV--QKVGELL----KLRMEKS 198
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
E VK + + L+ V R +LSGG +R A+ S + E +V ++DEP++
Sbjct: 199 PEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCV-------QEADVYMFDEPSSY 251
Query: 264 LDPIASTVVEDLIRSV 279
LD +IRS+
Sbjct: 252 LDVKQRLNAAQIIRSL 267
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177
E + ++G +GTGK+T++K++AG L PD+G ++I L + + Q A
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEG---------------QDIPKLNVSMKPQKIA 423
Query: 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLA-AVGLKGVEDRLPSELSGGMKKRVA 236
TVR+ L ++ K+R + ++ + ++ + + + D+ LSGG +RVA
Sbjct: 424 PKFPGTVRQ----LFFK--KIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVA 477
Query: 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
+ ++ + ++ L DEP+A LD + +IR
Sbjct: 478 IVLAL-------GIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 106/237 (44%), Gaps = 51/237 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ ++ I GE + I G +G+GK+++L +I G L +G + K +G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII-----KHSG-------- 99
Query: 166 GLRIGLVFQSAALFDSLTVRENV-GFLLYENSKMR--------DEQISELVKENLAAVGL 216
R+ Q + + T++EN+ + Y+ + + + I++ +++ +G
Sbjct: 100 --RVSFCSQFSWIMPG-TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA-STVVEDL 275
GV LSGG + R++LAR++ D ++ L D P LD V E
Sbjct: 157 GGVT------LSGGQRARISLARAVYKD-------ADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332
+ + +AN I +VT + +R+A D+++ L++G + G E S
Sbjct: 204 VCKL-------MANKTRI----LVTSKMEHLRKA-DKILILHQGSSYFYGTFSELQS 248
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 41/174 (23%)
Query: 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-----GLLAPDKGEVYIRGRK 154
++G K +L +++ GI GP+G GKST+++ IA G ++
Sbjct: 444 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHD 503
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
G SD + + VF+S VG E +K+ L
Sbjct: 504 IDGTHSDTSV----LDFVFESG-----------VG-------------TKEAIKDKLIEF 535
Query: 215 GLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
G +P S LSGG K ++ALAR+++ + ++LL DEPT LD +
Sbjct: 536 GFTDEMIAMPISALSGGWKMKLALARAVLRN-------ADILLLDEPTNHLDTV 582
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159
++F+ + +IGP+G GKST++ ++ G L P GEVY R I
Sbjct: 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 741
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 41/174 (23%)
Query: 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-----GLLAPDKGEVYIRGRK 154
++G K +L +++ GI GP+G GKST+ + IA G ++
Sbjct: 438 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHD 497
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
G SD + + VF+S VG E +K+ L
Sbjct: 498 IDGTHSDTSV----LDFVFESG-----------VG-------------TKEAIKDKLIEF 529
Query: 215 GLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
G P S LSGG K ++ALAR+++ + ++LL DEPT LD +
Sbjct: 530 GFTDEXIAXPISALSGGWKXKLALARAVLRN-------ADILLLDEPTNHLDTV 576
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159
++F+ + +IGP+G GKST++ ++ G L P GEVY R I
Sbjct: 686 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 735
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 41/174 (23%)
Query: 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-----GLLAPDKGEVYIRGRK 154
++G K +L +++ GI GP+G GKST+ + IA G ++
Sbjct: 444 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHD 503
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
G SD + + VF+S VG E +K+ L
Sbjct: 504 IDGTHSDTSV----LDFVFESG-----------VG-------------TKEAIKDKLIEF 535
Query: 215 GLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
G P S LSGG K ++ALAR+++ + ++LL DEPT LD +
Sbjct: 536 GFTDEXIAXPISALSGGWKXKLALARAVLRN-------ADILLLDEPTNHLDTV 582
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159
++F+ + +IGP+G GKST++ ++ G L P GEVY R I
Sbjct: 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 741
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 22/165 (13%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
+K +L ++ I G V GP+G GK+T+LK I+ L P KGE+ G +
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG------VPIT 74
Query: 163 EISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKENLAAVGLKGVE 220
++ G +I + + + ++V + + + LY ++E + L E++ + LK
Sbjct: 75 KVKG-KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDAL--ESVEVLDLK--- 128
Query: 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ ELS G +RV LA +++ V E+ + D+P +D
Sbjct: 129 -KKLGELSQGTIRRVQLASTLL-------VNAEIYVLDDPVVAID 165
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
E+ L ++ ++ +GE V I+GP+G+GK+T+L+ I+GLL P G ++I G
Sbjct: 17 ERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGM--------- 65
Query: 163 EISGLRIGLVFQS---AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KG 218
E+ +R + + + A +TV + V LYE K D +L E L A+ L +
Sbjct: 66 EVRKIRNYIRYSTNLPEAYEIGVTVNDIV--YLYEELKGLDR---DLFLEMLKALKLGEE 120
Query: 219 VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278
+ R +LS G V + ++ + +PE++ DEP +D V+ I+
Sbjct: 121 ILRRKLYKLSAGQSVLVRTSLAL-------ASQPEIVGLDEPFENVDAARRHVISRYIKE 173
Query: 279 VHKKG 283
K+G
Sbjct: 174 YGKEG 178
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+ GE +GI+GP+G GK+T +I+ G + D+G V
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPD---------KGEVYIRGRKRAGLISDEEIS 165
++ +G++G +G GK+T+LKI+AG + P+ K EV R R + +E+
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 166 GLRIGLV-----FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE 220
+ +V + A+ F TV E L + + + +++ EL + + +
Sbjct: 83 SNELKIVHKIQYVEYASKFLKGTVNE---ILTKIDERGKKDEVKEL-------LNMTNLW 132
Query: 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
++ + LSGG +R+ +A S++ E +V ++D+P++ LD
Sbjct: 133 NKDANILSGGGLQRLLVAASLL-------READVYIFDQPSSYLD 170
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-SELSGGMKKRVALAR 239
+LTV E F E++ R + L VGL + P +ELSGG +R+ LA
Sbjct: 691 ALTVDEAHDFFADESAIFR-------ALDTLREVGLGYLRLGQPATELSGGEAQRIKLAT 743
Query: 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299
+ + V + DEPT GL P VE L R + K L + GN + + V
Sbjct: 744 EL----RRSGRGGTVYVLDEPTTGLHPAD---VERLQRQLVK-----LVDAGN--TVIAV 789
Query: 300 THQHSTIRRAVDRLIFLYE------GKIVWQGMTHEFTSSSNPIVQQFASGSL 346
H+ + A D ++ + G++V QG E ++ + + +L
Sbjct: 790 EHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLRAAL 841
>pdb|3MK4|A Chain A, X-Ray Structure Of Human Pex3 In Complex With A Pex19
Derived Peptide
Length = 334
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 24 STLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83
S + G KP+ S Y EE V AC PRD+ T K + ++ + E
Sbjct: 184 SWINKDGSKPLLSHYMMPDEETPLAVQACGLSPRDITT-----IKLLNETRD-----MLE 233
Query: 84 PEDDGDVLIDCRN-----VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138
D VL C N + + E R ++HG ++ + + I+ I+
Sbjct: 234 SPDFSTVLNTCLNRGFSRLLDNMAE--FFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVN 291
Query: 139 G 139
G
Sbjct: 292 G 292
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTIL 134
+H L+ VS KI G V + G SG+GKST++
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTIL 134
+H L+ VS KI G V + G SG+GKST++
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 210 NLAAVGLKGVEDRLPS-ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
L VGL V P+ LSGG +RV LA + K S V + DEPT GL
Sbjct: 846 TLVDVGLGYVRLGQPAPTLSGGEAQRVKLASEL----QKRSTGRTVYILDEPTTGLH--- 898
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307
+D+ + ++ NGL + GN + +V+ H I+
Sbjct: 899 ---FDDIRKLLNVI--NGLVDKGN--TVIVIEHNLDVIK 930
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILK-IIAGLLA 142
+H LRG+ G + G SG+GKST++ I+A +LA
Sbjct: 655 EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLA 694
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 96 NVYKSFGEKHILRG-----VSFKIRHGEAVGIIGPSGTGKSTILKIIA 138
N+ + G++H+L + + H ++ + GP GTGK+T+ ++IA
Sbjct: 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIA 71
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTIL 134
+H L+ VS KI G V + G SG+GKST++
Sbjct: 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLV 365
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp Kinase
Of Streptococcus Pneumoniae
Length = 236
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 120 VGIIGPSGTGKSTILKIIA---GLLAPDKGEVY 149
+ I GP+ +GKST+ KIIA G D G +Y
Sbjct: 19 IAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 108 RGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLL 141
RGV+ K+ GE+ IIGP+G+GKS ++ I+ +L
Sbjct: 16 RGVT-KVGFGESNFTSIIGPNGSGKSNMMDAISFVL 50
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 227 LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENG 286
LSGG + VAL+ + N E ++ DEPT LD + ++ R V
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK------ 334
Query: 287 LANPGNIASYVVVTHQHSTIRRAVDRLI 314
+I +++TH H + D +I
Sbjct: 335 -----SIPQMIIITH-HRELEDVADVII 356
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172
K + G V + G GKSTI +I+A +L RGRK L D + L GL
Sbjct: 368 KHKQGFCVWLTGLPCAGKSTIAEILATMLQ-------ARGRKVTLLDGDVVRTHLSRGLG 420
Query: 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
F D +T VGF+ E K I LV
Sbjct: 421 FSKE---DRITNILRVGFVASEIVKHNGVVICALV 452
>pdb|2WW8|A Chain A, Structure Of The Pilus Adhesin (Rrga) From Streptococcus
Pneumoniae
Length = 893
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 34 INSFYYKAKEEQRKVVCACVAPPR------DLGTDG-FPATKF----NDSSKSENVNTLF 82
+N +++ E++ + + P LGTDG F + ND S+ EN +
Sbjct: 579 LNRYFHTIVTEKKSIENGTITDPMGELIDLQLGTDGRFDPADYTLTANDGSRLENGQAVG 638
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHI 106
P++DG +L + + +Y + EK I
Sbjct: 639 GPQNDGGLLKNAKVLYDT-TEKRI 661
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 122 IIGPSGTGKSTILK 135
I GPSGTGKST+LK
Sbjct: 7 ISGPSGTGKSTLLK 20
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 122 IIGPSGTGKSTILK 135
I GPSGTGKST+LK
Sbjct: 6 ISGPSGTGKSTLLK 19
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 120 VGIIGPSGTGKSTILKIIAGLLAP---DKGEVY 149
V + GPSGTGKS++ K +A L D G +Y
Sbjct: 7 VAVDGPSGTGKSSVAKELARQLGASYLDTGAMY 39
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 122 IIGPSGTGKSTILK 135
I GPSGTGKST+LK
Sbjct: 22 ISGPSGTGKSTLLK 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,105,376
Number of Sequences: 62578
Number of extensions: 436667
Number of successful extensions: 1777
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1475
Number of HSP's gapped (non-prelim): 158
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)